locus-tag class description LIT38_00005 PF00308 Bacterial dnaA protein LIT38_00005 PF08299 Bacterial dnaA protein helix-turn-helix LIT38_00005 PF11638 DnaA N-terminal domain LIT38_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain LIT38_00010 PF02767 DNA polymerase III beta subunit, central domain LIT38_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain LIT38_00020 PF02463 RecF/RecN/SMC N terminal domain LIT38_00025 PF04025 Domain of unknown function (DUF370) LIT38_00030 PF01751 Toprim domain LIT38_00030 PF00204 DNA gyrase B LIT38_00030 PF00986 DNA gyrase B subunit, carboxyl terminus LIT38_00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_00035 PF03989 DNA gyrase C-terminal domain, beta-propeller LIT38_00035 PF00521 DNA gyrase/topoisomerase IV, subunit A LIT38_00040 PF01966 HD domain LIT38_00040 PF11871 Domain of unknown function (DUF3391) LIT38_00070 PF14175 YaaC-like Protein LIT38_00075 PF00478 IMP dehydrogenase / GMP reductase domain LIT38_00075 PF00571 CBS domain LIT38_00080 PF07943 Penicillin-binding protein 5, C-terminal domain LIT38_00080 PF00768 D-alanyl-D-alanine carboxypeptidase LIT38_00085 PF01680 SOR/SNZ family LIT38_00090 PF01174 SNO glutamine amidotransferase family LIT38_00095 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LIT38_00095 PF02403 Seryl-tRNA synthetase N-terminal domain LIT38_00105 PF01712 Deoxynucleoside kinase LIT38_00110 PF01712 Deoxynucleoside kinase LIT38_00115 PF00704 Glycosyl hydrolases family 18 LIT38_00115 PF01476 LysM domain LIT38_00120 PF00857 Isochorismatase family LIT38_00125 PF14437 MafB19-like deaminase LIT38_00135 PF12169 DNA polymerase III subunits gamma and tau domain III LIT38_00140 PF02575 YbaB/EbfC DNA-binding family LIT38_00145 PF13662 Toprim domain LIT38_00145 PF02132 RecR protein LIT38_00155 PF07441 SigmaK-factor processing regulatory protein BofA LIT38_00185 PF10764 Inhibitor of sigma-G Gin LIT38_00190 PF01276 Orn/Lys/Arg decarboxylase, major domain LIT38_00190 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LIT38_00195 PF02223 Thymidylate kinase LIT38_00200 PF06153 Cyclic-di-AMP receptor LIT38_00205 PF03885 Protein of unknown function (DUF327) LIT38_00210 PF09115 DNA polymerase III, delta subunit, C terminal LIT38_00215 PF04468 PSP1 C-terminal conserved region LIT38_00220 PF06156 Initiation control protein YabA LIT38_00225 PF05175 Methyltransferase small domain LIT38_00230 PF01541 GIY-YIG catalytic domain LIT38_00235 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LIT38_00240 PF18277 AbrB C-terminal domain LIT38_00240 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin LIT38_00245 PF01588 Putative tRNA binding domain LIT38_00245 PF09334 tRNA synthetases class I (M) LIT38_00245 PF08264 Anticodon-binding domain of tRNA LIT38_00250 PF01026 TatD related DNase LIT38_00255 PF03990 G5-linked-Ubiquitin-like domain LIT38_00255 PF06725 3D domain LIT38_00255 PF07501 G5 domain LIT38_00260 PF13331 Domain of unknown function (DUF4093) LIT38_00260 PF13662 Toprim domain LIT38_00265 PF00398 Ribosomal RNA adenine dimethylase LIT38_00270 PF05582 YabG peptidase U57 LIT38_00275 PF06257 Biofilm formation stimulator VEG LIT38_00280 PF00269 Small, acid-soluble spore proteins, alpha/beta type LIT38_00285 PF08544 GHMP kinases C terminal LIT38_00285 PF00288 GHMP kinases N terminal domain LIT38_00290 PF00156 Phosphoribosyl transferase domain LIT38_00290 PF09182 Bacterial purine repressor, N-terminal LIT38_00295 PF01042 Endoribonuclease L-PSP LIT38_00300 PF04026 SpoVG LIT38_00305 PF00483 Nucleotidyl transferase LIT38_00305 PF00132 Bacterial transferase hexapeptide (six repeats) LIT38_00310 PF14572 Phosphoribosyl synthetase-associated domain LIT38_00310 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase LIT38_00315 PF14693 Ribosomal protein TL5, C-terminal domain LIT38_00315 PF01386 Ribosomal L25p family LIT38_00320 PF01195 Peptidyl-tRNA hydrolase LIT38_00325 PF10955 Protein of unknown function (DUF2757) LIT38_00330 PF02559 CarD-like/TRCF domain LIT38_00330 PF00271 Helicase conserved C-terminal domain LIT38_00330 PF17757 UvrB interaction domain LIT38_00330 PF03461 TRCF domain LIT38_00330 PF00270 DEAD/DEAH box helicase LIT38_00335 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin LIT38_00335 PF15714 Stage V sporulation protein T C-terminal, transcription factor LIT38_00340 PF01943 Polysaccharide biosynthesis protein LIT38_00340 PF14667 Polysaccharide biosynthesis C-terminal domain LIT38_00345 PF03819 MazG nucleotide pyrophosphohydrolase domain LIT38_00345 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LIT38_00350 PF01479 S4 domain LIT38_00355 PF07873 YabP family LIT38_00360 PF09578 Spore cortex protein YabQ (Spore_YabQ) LIT38_00370 PF00575 S1 RNA binding domain LIT38_00385 PF07228 Stage II sporulation protein E (SpoIIE) LIT38_00390 PF00092 von Willebrand factor type A domain LIT38_00395 PF00069 Protein kinase domain LIT38_00400 PF11734 TilS substrate C-terminal domain LIT38_00400 PF01171 PP-loop family LIT38_00400 PF09179 TilS substrate binding domain LIT38_00405 PF00156 Phosphoribosyl transferase domain LIT38_00410 PF17862 AAA+ lid domain LIT38_00410 PF01434 Peptidase family M41 LIT38_00410 PF06480 FtsH Extracellular LIT38_00410 PF00004 ATPase family associated with various cellular activities (AAA) LIT38_00415 PF03309 Type III pantothenate kinase LIT38_00420 PF01430 Hsp33 protein LIT38_00425 PF13145 PPIC-type PPIASE domain LIT38_00430 PF00291 Pyridoxal-phosphate dependent enzyme LIT38_00435 PF04715 Anthranilate synthase component I, N terminal region LIT38_00435 PF00425 chorismate binding enzyme LIT38_00440 PF00117 Glutamine amidotransferase class-I LIT38_00445 PF01063 Amino-transferase class IV LIT38_00450 PF00809 Pterin binding enzyme LIT38_00455 PF02152 Dihydroneopterin aldolase LIT38_00460 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) LIT38_00465 PF01381 Helix-turn-helix LIT38_00470 PF01207 Dihydrouridine synthase (Dus) LIT38_00475 PF01336 OB-fold nucleic acid binding domain LIT38_00475 PF00152 tRNA synthetases class II (D, K and N) LIT38_00555 PF05848 CtsR N-terminal HTH domain LIT38_00555 PF17727 CtsR C-terminal dimerization domain LIT38_00560 PF02151 UvrB/uvrC motif LIT38_00565 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain LIT38_00570 PF17871 AAA lid domain LIT38_00570 PF07724 AAA domain (Cdc48 subfamily) LIT38_00570 PF00004 ATPase family associated with various cellular activities (AAA) LIT38_00570 PF10431 C-terminal, D2-small domain, of ClpB protein LIT38_00570 PF02861 Clp amino terminal domain, pathogenicity island component LIT38_00575 PF18073 Rubredoxin metal binding domain LIT38_00580 PF02457 DisA bacterial checkpoint controller nucleotide-binding LIT38_00580 PF10635 DisA bacterial checkpoint controller linker region LIT38_00590 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase LIT38_00595 PF02542 YgbB family LIT38_00600 PF00749 tRNA synthetases class I (E and Q), catalytic domain LIT38_00605 PF06426 Serine acetyltransferase, N-terminal LIT38_00605 PF00132 Bacterial transferase hexapeptide (six repeats) LIT38_00610 PF01406 tRNA synthetases class I (C) catalytic domain LIT38_00610 PF09190 DALR domain LIT38_00615 PF00636 Ribonuclease III domain LIT38_00620 PF08032 RNA 2'-O ribose methyltransferase substrate binding LIT38_00620 PF00588 SpoU rRNA Methylase family LIT38_00625 PF05991 YacP-like NYN domain LIT38_00630 PF08281 Sigma-70, region 4 LIT38_00630 PF04542 Sigma-70 region 2 LIT38_00635 PF00471 Ribosomal protein L33 LIT38_00640 PF00584 SecE/Sec61-gamma subunits of protein translocation complex LIT38_00645 PF02357 Transcription termination factor nusG LIT38_00645 PF00467 KOW motif LIT38_00650 PF03946 Ribosomal protein L11, N-terminal domain LIT38_00650 PF00298 Ribosomal protein L11, RNA binding domain LIT38_00655 PF00687 Ribosomal protein L1p/L10e family LIT38_00660 PF00466 Ribosomal protein L10 LIT38_00665 PF16320 Ribosomal protein L7/L12 dimerisation domain LIT38_00665 PF00542 Ribosomal protein L7/L12 C-terminal domain LIT38_00670 PF05175 Methyltransferase small domain LIT38_00675 PF04565 RNA polymerase Rpb2, domain 3 LIT38_00675 PF04563 RNA polymerase beta subunit LIT38_00675 PF04561 RNA polymerase Rpb2, domain 2 LIT38_00675 PF04560 RNA polymerase Rpb2, domain 7 LIT38_00675 PF10385 RNA polymerase beta subunit external 1 domain LIT38_00675 PF00562 RNA polymerase Rpb2, domain 6 LIT38_00680 PF04998 RNA polymerase Rpb1, domain 5 LIT38_00680 PF05000 RNA polymerase Rpb1, domain 4 LIT38_00680 PF04983 RNA polymerase Rpb1, domain 3 LIT38_00680 PF00623 RNA polymerase Rpb1, domain 2 LIT38_00680 PF04997 RNA polymerase Rpb1, domain 1 LIT38_00685 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family LIT38_00690 PF00164 Ribosomal protein S12/S23 LIT38_00695 PF00177 Ribosomal protein S7p/S5e LIT38_00700 PF03144 Elongation factor Tu domain 2 LIT38_00700 PF00009 Elongation factor Tu GTP binding domain LIT38_00700 PF03764 Elongation factor G, domain IV LIT38_00700 PF00679 Elongation factor G C-terminus LIT38_00700 PF14492 Elongation Factor G, domain II LIT38_00705 PF00009 Elongation factor Tu GTP binding domain LIT38_00705 PF03143 Elongation factor Tu C-terminal domain LIT38_00705 PF03144 Elongation factor Tu domain 2 LIT38_00710 PF00338 Ribosomal protein S10p/S20e LIT38_00715 PF00297 Ribosomal protein L3 LIT38_00720 PF00573 Ribosomal protein L4/L1 family LIT38_00725 PF00276 Ribosomal protein L23 LIT38_00730 PF03947 Ribosomal Proteins L2, C-terminal domain LIT38_00730 PF00181 Ribosomal Proteins L2, RNA binding domain LIT38_00735 PF00203 Ribosomal protein S19 LIT38_00740 PF00237 Ribosomal protein L22p/L17e LIT38_00745 PF07650 KH domain LIT38_00745 PF00189 Ribosomal protein S3, C-terminal domain LIT38_00750 PF00252 Ribosomal protein L16p/L10e LIT38_00755 PF00831 Ribosomal L29 protein LIT38_00760 PF00366 Ribosomal protein S17 LIT38_00765 PF00238 Ribosomal protein L14p/L23e LIT38_00770 PF00467 KOW motif LIT38_00770 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 LIT38_00775 PF00281 Ribosomal protein L5 LIT38_00775 PF00673 ribosomal L5P family C-terminus LIT38_00780 PF00253 Ribosomal protein S14p/S29e LIT38_00785 PF00410 Ribosomal protein S8 LIT38_00790 PF00347 Ribosomal protein L6 LIT38_00795 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast LIT38_00800 PF00333 Ribosomal protein S5, N-terminal domain LIT38_00800 PF03719 Ribosomal protein S5, C-terminal domain LIT38_00805 PF00327 Ribosomal protein L30p/L7e LIT38_00810 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A LIT38_00815 PF00344 SecY translocase LIT38_00820 PF05191 Adenylate kinase, active site lid LIT38_00825 PF00557 Metallopeptidase family M24 LIT38_00835 PF01176 Translation initiation factor 1A / IF-1 LIT38_00840 PF00444 Ribosomal protein L36 LIT38_00845 PF00416 Ribosomal protein S13/S18 LIT38_00850 PF00411 Ribosomal protein S11 LIT38_00855 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain LIT38_00855 PF01000 RNA polymerase Rpb3/RpoA insert domain LIT38_00855 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain LIT38_00860 PF01196 Ribosomal protein L17 LIT38_00865 PF00005 ABC transporter LIT38_00870 PF00005 ABC transporter LIT38_00875 PF02361 Cobalt transport protein LIT38_00880 PF01416 tRNA pseudouridine synthase LIT38_00885 PF00572 Ribosomal protein L13 LIT38_00890 PF00380 Ribosomal protein S9/S16 LIT38_00905 PF03807 NADP oxidoreductase coenzyme F420-dependent LIT38_00905 PF14748 Pyrroline-5-carboxylate reductase dimerisation LIT38_00910 PF01472 PUA domain LIT38_00910 PF00696 Amino acid kinase family LIT38_00915 PF00171 Aldehyde dehydrogenase family LIT38_00925 PF01520 N-acetylmuramoyl-L-alanine amidase LIT38_00930 PF10609 NUBPL iron-transfer P-loop NTPase LIT38_00935 PF17898 Spore germination GerD central core domain LIT38_00940 PF14089 KinB-signalling pathway activation in sporulation LIT38_00945 PF01522 Polysaccharide deacetylase LIT38_01020 PF00491 Arginase family LIT38_01030 PF08281 Sigma-70, region 4 LIT38_01030 PF04542 Sigma-70 region 2 LIT38_01035 PF13490 Putative zinc-finger LIT38_01040 PF02457 DisA bacterial checkpoint controller nucleotide-binding LIT38_01045 PF07949 YbbR-like protein LIT38_01050 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LIT38_01050 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LIT38_01050 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LIT38_01050 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LIT38_01055 PF01380 SIS domain LIT38_01065 PF01032 FecCD transport family LIT38_01070 PF01032 FecCD transport family LIT38_01075 PF00005 ABC transporter LIT38_01080 PF01497 Periplasmic binding protein LIT38_01085 PF01596 O-methyltransferase LIT38_01090 PF00440 Bacterial regulatory proteins, tetR family LIT38_01095 PF00873 AcrB/AcrD/AcrF family LIT38_01100 PF07690 Major Facilitator Superfamily LIT38_01125 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LIT38_01125 PF01411 tRNA synthetases class II (A) LIT38_01125 PF02272 DHHA1 domain LIT38_01135 PF04951 D-aminopeptidase LIT38_01140 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_01145 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_01145 PF12911 N-terminal TM domain of oligopeptide transport permease C LIT38_01150 PF00005 ABC transporter LIT38_01150 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LIT38_01155 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LIT38_01160 PF17676 LD-carboxypeptidase C-terminal domain LIT38_01160 PF02016 LD-carboxypeptidase N-terminal domain LIT38_01165 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LIT38_01165 PF13378 Enolase C-terminal domain-like LIT38_01170 PF00877 NlpC/P60 family LIT38_01175 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LIT38_01175 PF00005 ABC transporter LIT38_01185 PF08892 YqcI/YcgG family LIT38_01195 PF05552 Conserved TM helix LIT38_01205 PF00210 Ferritin-like domain LIT38_01215 PF03485 Arginyl tRNA synthetase N terminal domain LIT38_01215 PF05746 DALR anticodon binding domain LIT38_01215 PF00750 tRNA synthetases class I (R) LIT38_01220 PF01098 Cell cycle protein LIT38_01230 PF01497 Periplasmic binding protein LIT38_01235 PF01032 FecCD transport family LIT38_01240 PF00005 ABC transporter LIT38_01245 PF03186 CobD/Cbib protein LIT38_01250 PF00155 Aminotransferase class I and II LIT38_01255 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase LIT38_01260 PF07685 CobB/CobQ-like glutamine amidotransferase domain LIT38_01265 PF02654 Cobalamin-5-phosphate synthase LIT38_01280 PF01923 Cobalamin adenosyltransferase LIT38_01295 PF00300 Histidine phosphatase superfamily (branch 1) LIT38_01300 PF00293 NUDIX domain LIT38_01300 PF09297 NADH pyrophosphatase zinc ribbon domain LIT38_01305 PF12681 Glyoxalase-like domain LIT38_01310 PF01740 STAS domain LIT38_01310 PF00916 Sulfate permease family LIT38_01320 PF00375 Sodium:dicarboxylate symporter family LIT38_01325 PF07478 D-ala D-ala ligase C-terminus LIT38_01325 PF01820 D-ala D-ala ligase N-terminus LIT38_01330 PF01225 Mur ligase family, catalytic domain LIT38_01330 PF08245 Mur ligase middle domain LIT38_01330 PF02875 Mur ligase family, glutamate ligase domain LIT38_01335 PF12146 Serine aminopeptidase, S33 LIT38_01340 PF00270 DEAD/DEAH box helicase LIT38_01340 PF00271 Helicase conserved C-terminal domain LIT38_01345 PF03851 UV-endonuclease UvdE LIT38_01350 PF03703 Bacterial PH domain LIT38_01355 PF03703 Bacterial PH domain LIT38_01360 PF01694 Rhomboid family LIT38_01365 PF01648 4'-phosphopantetheinyl transferase superfamily LIT38_01375 PF01168 Alanine racemase, N-terminal domain LIT38_01375 PF00842 Alanine racemase, C-terminal domain LIT38_01380 PF01402 Ribbon-helix-helix protein, copG family LIT38_01385 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system LIT38_01390 PF01740 STAS domain LIT38_01390 PF08678 Rsbr N terminal LIT38_01395 PF01740 STAS domain LIT38_01400 PF13581 Histidine kinase-like ATPase domain LIT38_01405 PF07228 Stage II sporulation protein E (SpoIIE) LIT38_01405 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain LIT38_01410 PF01740 STAS domain LIT38_01415 PF13581 Histidine kinase-like ATPase domain LIT38_01420 PF04545 Sigma-70, region 4 LIT38_01420 PF04539 Sigma-70 region 3 LIT38_01420 PF04542 Sigma-70 region 2 LIT38_01425 PF07228 Stage II sporulation protein E (SpoIIE) LIT38_01430 PF16921 Tex protein YqgF-like domain LIT38_01430 PF09371 Tex-like protein N-terminal domain LIT38_01430 PF17674 HHH domain LIT38_01430 PF00575 S1 RNA binding domain LIT38_01440 PF10263 SprT-like family LIT38_01540 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE LIT38_01545 PF00814 Glycoprotease family LIT38_01550 PF00583 Acetyltransferase (GNAT) family LIT38_01555 PF00814 Glycoprotease family LIT38_01560 PF12848 ABC transporter LIT38_01560 PF16326 ABC transporter C-terminal domain LIT38_01560 PF00005 ABC transporter LIT38_01565 PF01967 MoaC family LIT38_01570 PF02629 CoA binding domain LIT38_01570 PF06971 Putative DNA-binding protein N-terminus LIT38_01580 PF02517 CPBP intramembrane metalloprotease LIT38_01585 PF00166 Chaperonin 10 Kd subunit LIT38_01590 PF00118 TCP-1/cpn60 chaperonin family LIT38_01595 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LIT38_01600 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_01605 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_01610 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LIT38_01610 PF00005 ABC transporter LIT38_01615 PF00005 ABC transporter LIT38_01615 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LIT38_01620 PF01554 MatE LIT38_01685 PF06013 Proteins of 100 residues with WXG LIT38_01690 PF08817 WXG100 protein secretion system (Wss), protein YukD LIT38_01695 PF10140 WXG100 protein secretion system (Wss), protein YukC LIT38_01700 PF01580 FtsK/SpoIIIE family LIT38_01700 PF12538 DNA transporter LIT38_01735 PF17353 Family of unknown function (DUF5381) LIT38_01745 PF17353 Family of unknown function (DUF5381) LIT38_01760 PF17863 AAA lid domain LIT38_01760 PF07726 ATPase family associated with various cellular activities (AAA) LIT38_01765 PF01882 Protein of unknown function DUF58 LIT38_01770 PF11992 Domain of unknown function (DUF3488) LIT38_01770 PF13559 Domain of unknown function (DUF4129) LIT38_01770 PF01841 Transglutaminase-like superfamily LIT38_01775 PF00958 GMP synthase C terminal domain LIT38_01775 PF02540 NAD synthase LIT38_01775 PF00117 Glutamine amidotransferase class-I LIT38_01780 PF00860 Permease family LIT38_01785 PF00874 PRD domain LIT38_01785 PF03123 CAT RNA binding domain LIT38_01790 PF00367 phosphotransferase system, EIIB LIT38_01790 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LIT38_01790 PF02378 Phosphotransferase system, EIIC LIT38_01810 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LIT38_01820 PF00731 AIR carboxylase LIT38_01825 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain LIT38_01825 PF02222 ATP-grasp domain LIT38_01830 PF00206 Lyase LIT38_01830 PF10397 Adenylosuccinate lyase C-terminus LIT38_01835 PF01259 SAICAR synthetase LIT38_01840 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase LIT38_01850 PF02769 AIR synthase related protein, C-terminal domain LIT38_01850 PF00586 AIR synthase related protein, N-terminal domain LIT38_01850 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain LIT38_01855 PF00156 Phosphoribosyl transferase domain LIT38_01860 PF02769 AIR synthase related protein, C-terminal domain LIT38_01860 PF00586 AIR synthase related protein, N-terminal domain LIT38_01865 PF00551 Formyl transferase LIT38_01870 PF01808 AICARFT/IMPCHase bienzyme LIT38_01870 PF02142 MGS-like domain LIT38_01875 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain LIT38_01875 PF02843 Phosphoribosylglycinamide synthetase, C domain LIT38_01875 PF02844 Phosphoribosylglycinamide synthetase, N domain LIT38_01880 PF11127 Protein of unknown function (DUF2892) LIT38_01885 PF01979 Amidohydrolase family LIT38_01885 PF13382 Adenine deaminase C-terminal domain LIT38_01890 PF11258 Protein of unknown function (DUF3048) N-terminal domain LIT38_01890 PF17479 Protein of unknown function (DUF3048) C-terminal domain LIT38_01895 PF01371 Trp repressor protein LIT38_01900 PF01884 PcrB family LIT38_01905 PF13361 UvrD-like helicase C-terminal domain LIT38_01905 PF00580 UvrD/REP helicase N-terminal domain LIT38_01910 PF12826 Helix-hairpin-helix motif LIT38_01910 PF03119 NAD-dependent DNA ligase C4 zinc finger domain LIT38_01910 PF03120 NAD-dependent DNA ligase OB-fold domain LIT38_01910 PF00533 BRCA1 C Terminus (BRCT) domain LIT38_01910 PF01653 NAD-dependent DNA ligase adenylation domain LIT38_01915 PF07537 CamS sex pheromone cAM373 precursor LIT38_01920 PF00171 Aldehyde dehydrogenase family LIT38_01925 PF00857 Isochorismatase family LIT38_01930 PF00474 Sodium:solute symporter family LIT38_01935 PF00463 Isocitrate lyase family LIT38_01940 PF07997 Protein of unknown function (DUF1694) LIT38_01950 PF02686 Glu-tRNAGln amidotransferase C subunit LIT38_01955 PF01425 Amidase LIT38_01960 PF02637 GatB domain LIT38_01960 PF02934 GatB/GatE catalytic domain LIT38_01970 PF03060 Nitronate monooxygenase LIT38_01975 PF02833 DHHA2 domain LIT38_01975 PF01368 DHH family LIT38_01985 PF13426 PAS domain LIT38_01985 PF01740 STAS domain LIT38_01990 PF04239 Protein of unknown function (DUF421) LIT38_01995 PF02660 Glycerol-3-phosphate acyltransferase LIT38_02010 PF17922 Tetracyclin repressor-like, C-terminal domain LIT38_02010 PF00440 Bacterial regulatory proteins, tetR family LIT38_02015 PF00781 Diacylglycerol kinase catalytic domain LIT38_02020 PF01938 TRAM domain LIT38_02020 PF05958 tRNA (Uracil-5-)-methyltransferase LIT38_02025 PF00512 His Kinase A (phospho-acceptor) domain LIT38_02025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_02025 PF00989 PAS fold LIT38_02025 PF13188 PAS domain LIT38_02025 PF13426 PAS domain LIT38_02040 PF10112 5-bromo-4-chloroindolyl phosphate hydrolysis protein LIT38_02045 PF05816 Toxic anion resistance protein (TelA) LIT38_02050 PF00512 His Kinase A (phospho-acceptor) domain LIT38_02050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_02050 PF13188 PAS domain LIT38_02050 PF13426 PAS domain LIT38_02050 PF00989 PAS fold LIT38_02055 PF12728 Helix-turn-helix domain LIT38_02060 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIT38_02065 PF02225 PA domain LIT38_02065 PF04389 Peptidase family M28 LIT38_02075 PF00892 EamA-like transporter family LIT38_02080 PF04239 Protein of unknown function (DUF421) LIT38_02085 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LIT38_02085 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LIT38_02095 PF00753 Metallo-beta-lactamase superfamily LIT38_02100 PF02342 TerD domain LIT38_02105 PF03009 Glycerophosphoryl diester phosphodiesterase family LIT38_02120 PF00749 tRNA synthetases class I (E and Q), catalytic domain LIT38_02120 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain LIT38_02125 PF12146 Serine aminopeptidase, S33 LIT38_02130 PF07690 Major Facilitator Superfamily LIT38_02135 PF00350 Dynamin family LIT38_02140 PF01627 Hpt domain LIT38_02140 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_02140 PF00512 His Kinase A (phospho-acceptor) domain LIT38_02140 PF00072 Response regulator receiver domain LIT38_02145 PF01739 CheR methyltransferase, SAM binding domain LIT38_02145 PF03705 CheR methyltransferase, all-alpha domain LIT38_02150 PF00990 Diguanylate cyclase, GGDEF domain LIT38_02150 PF00072 Response regulator receiver domain LIT38_02155 PF13840 ACT domain LIT38_02155 PF00696 Amino acid kinase family LIT38_02165 PF07690 Major Facilitator Superfamily LIT38_02170 PF00551 Formyl transferase LIT38_02170 PF01842 ACT domain LIT38_02185 PF16655 PhoD-like phosphatase, N-terminal domain LIT38_02185 PF09423 PhoD-like phosphatase LIT38_02190 PF02416 mttA/Hcf106 family LIT38_02205 PF03741 Integral membrane protein TerC family LIT38_02235 PF01070 FMN-dependent dehydrogenase LIT38_02250 PF03070 TENA/THI-4/PQQC family LIT38_02255 PF06940 Domain of unknown function (DUF1287) LIT38_02265 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase LIT38_02270 PF09335 SNARE associated Golgi protein LIT38_02275 PF01522 Polysaccharide deacetylase LIT38_02280 PF05067 Manganese containing catalase LIT38_02285 PF01032 FecCD transport family LIT38_02290 PF01032 FecCD transport family LIT38_02295 PF01497 Periplasmic binding protein LIT38_02300 PF00005 ABC transporter LIT38_02305 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIT38_02315 PF03992 Antibiotic biosynthesis monooxygenase LIT38_02320 PF01032 FecCD transport family LIT38_02325 PF01032 FecCD transport family LIT38_02330 PF02311 AraC-like ligand binding domain LIT38_02330 PF12833 Helix-turn-helix domain LIT38_02335 PF01497 Periplasmic binding protein LIT38_02340 PF06276 Ferric iron reductase FhuF-like transporter LIT38_02340 PF04183 IucA / IucC family LIT38_02345 PF06276 Ferric iron reductase FhuF-like transporter LIT38_02345 PF04183 IucA / IucC family LIT38_02350 PF00501 AMP-binding enzyme LIT38_02350 PF13193 AMP-binding enzyme C-terminal domain LIT38_02365 PF01261 Xylose isomerase-like TIM barrel LIT38_02375 PF00664 ABC transporter transmembrane region LIT38_02375 PF00005 ABC transporter LIT38_02380 PF09339 IclR helix-turn-helix domain LIT38_02380 PF01614 Bacterial transcriptional regulator LIT38_02385 PF00171 Aldehyde dehydrogenase family LIT38_02390 PF00701 Dihydrodipicolinate synthetase family LIT38_02400 PF01557 Fumarylacetoacetate (FAA) hydrolase family LIT38_02405 PF03812 2-keto-3-deoxygluconate permease LIT38_02410 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus LIT38_02410 PF08666 SAF domain LIT38_02420 PF08666 SAF domain LIT38_02420 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus LIT38_02435 PF00535 Glycosyl transferase family 2 LIT38_02450 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIT38_02450 PF13192 Thioredoxin domain LIT38_02455 PF00578 AhpC/TSA family LIT38_02460 PF03551 Transcriptional regulator PadR-like family LIT38_02470 PF03831 PhnA domain LIT38_02470 PF08274 PhnA Zinc-Ribbon LIT38_02475 PF00989 PAS fold LIT38_02475 PF00512 His Kinase A (phospho-acceptor) domain LIT38_02475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_02475 PF13426 PAS domain LIT38_02475 PF13188 PAS domain LIT38_02480 PF00248 Aldo/keto reductase family LIT38_02485 PF07690 Major Facilitator Superfamily LIT38_02490 PF01638 HxlR-like helix-turn-helix LIT38_02625 PF09125 Cytochrome C oxidase subunit II, transmembrane LIT38_02625 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LIT38_02630 PF00115 Cytochrome C and Quinol oxidase polypeptide I LIT38_02650 PF01545 Cation efflux family LIT38_02650 PF16916 Dimerisation domain of Zinc Transporter LIT38_02665 PF00565 Staphylococcal nuclease homologue LIT38_02665 PF02872 5'-nucleotidase, C-terminal domain LIT38_02665 PF00746 LPXTG cell wall anchor motif LIT38_02665 PF00149 Calcineurin-like phosphoesterase LIT38_02675 PF13667 ThiC-associated domain LIT38_02675 PF01964 Radical SAM ThiC family LIT38_02680 PF02581 Thiamine monophosphate synthase LIT38_02685 PF01266 FAD dependent oxidoreductase LIT38_02690 PF05690 Thiazole biosynthesis protein ThiG LIT38_02690 PF02597 ThiS family LIT38_02695 PF05690 Thiazole biosynthesis protein ThiG LIT38_02700 PF00899 ThiF family LIT38_02705 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LIT38_02715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_02715 PF00512 His Kinase A (phospho-acceptor) domain LIT38_02720 PF00072 Response regulator receiver domain LIT38_02720 PF00486 Transcriptional regulatory protein, C terminal LIT38_02730 PF00005 ABC transporter LIT38_02735 PF03703 Bacterial PH domain LIT38_02740 PF03703 Bacterial PH domain LIT38_02750 PF00072 Response regulator receiver domain LIT38_02750 PF00486 Transcriptional regulatory protein, C terminal LIT38_02755 PF00512 His Kinase A (phospho-acceptor) domain LIT38_02755 PF00672 HAMP domain LIT38_02765 PF00005 ABC transporter LIT38_02780 PF04893 Yip1 domain LIT38_02785 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion LIT38_02790 PF00005 ABC transporter LIT38_02795 PF12704 MacB-like periplasmic core domain LIT38_02795 PF02687 FtsX-like permease family LIT38_02800 PF00563 EAL domain LIT38_02800 PF03707 Bacterial signalling protein N terminal repeat LIT38_02800 PF13188 PAS domain LIT38_02800 PF00990 Diguanylate cyclase, GGDEF domain LIT38_02820 PF13302 Acetyltransferase (GNAT) domain LIT38_02825 PF07561 Domain of Unknown Function (DUF1540) LIT38_02860 PF00881 Nitroreductase family LIT38_02865 PF01047 MarR family LIT38_02870 PF13649 Methyltransferase domain LIT38_02875 PF00291 Pyridoxal-phosphate dependent enzyme LIT38_02880 PF01053 Cys/Met metabolism PLP-dependent enzyme LIT38_02885 PF01329 Pterin 4 alpha carbinolamine dehydratase LIT38_02890 PF00351 Biopterin-dependent aromatic amino acid hydroxylase LIT38_02895 PF05360 yiaA/B two helix domain LIT38_02905 PF00144 Beta-lactamase LIT38_02930 PF10787 Uncharacterised protein from bacillus cereus group LIT38_02935 PF01022 Bacterial regulatory protein, arsR family LIT38_02945 PF00583 Acetyltransferase (GNAT) family LIT38_02950 PF00155 Aminotransferase class I and II LIT38_02950 PF00392 Bacterial regulatory proteins, gntR family LIT38_02955 PF03960 ArsC family LIT38_02970 PF07486 Cell Wall Hydrolase LIT38_02975 PF00892 EamA-like transporter family LIT38_02980 PF01037 Lrp/AsnC ligand binding domain LIT38_02990 PF06150 ChaB LIT38_03005 PF02342 TerD domain LIT38_03015 PF00893 Small Multidrug Resistance protein LIT38_03020 PF00893 Small Multidrug Resistance protein LIT38_03025 PF05139 Erythromycin esterase LIT38_03035 PF03741 Integral membrane protein TerC family LIT38_03040 PF13407 Periplasmic binding protein domain LIT38_03045 PF00005 ABC transporter LIT38_03050 PF02653 Branched-chain amino acid transport system / permease component LIT38_03060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_03060 PF02743 Cache domain LIT38_03060 PF06580 Histidine kinase LIT38_03060 PF00672 HAMP domain LIT38_03065 PF00072 Response regulator receiver domain LIT38_03065 PF12833 Helix-turn-helix domain LIT38_03070 PF13407 Periplasmic binding protein domain LIT38_03080 PF13419 Haloacid dehalogenase-like hydrolase LIT38_03085 PF03575 Peptidase family S51 LIT38_03095 PF02567 Phenazine biosynthesis-like protein LIT38_03105 PF01047 MarR family LIT38_03105 PF00583 Acetyltransferase (GNAT) family LIT38_03115 PF00480 ROK family LIT38_03120 PF07690 Major Facilitator Superfamily LIT38_03125 PF14602 Hexapeptide repeat of succinyl-transferase LIT38_03125 PF12464 Maltose acetyltransferase LIT38_03130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIT38_03130 PF03466 LysR substrate binding domain LIT38_03135 PF01810 LysE type translocator LIT38_03150 PF07687 Peptidase dimerisation domain LIT38_03150 PF01546 Peptidase family M20/M25/M40 LIT38_03155 PF03458 UPF0126 domain LIT38_03160 PF03965 Penicillinase repressor LIT38_03165 PF05569 BlaR1 peptidase M56 LIT38_03165 PF00905 Penicillin binding protein transpeptidase domain LIT38_03175 PF03009 Glycerophosphoryl diester phosphodiesterase family LIT38_03185 PF01546 Peptidase family M20/M25/M40 LIT38_03190 PF01546 Peptidase family M20/M25/M40 LIT38_03190 PF07687 Peptidase dimerisation domain LIT38_03200 PF02824 TGS domain LIT38_03200 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LIT38_03200 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LIT38_03200 PF03129 Anticodon binding domain LIT38_03205 PF01061 ABC-2 type transporter LIT38_03215 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LIT38_03220 PF00990 Diguanylate cyclase, GGDEF domain LIT38_03220 PF08448 PAS fold LIT38_03230 PF01613 Flavin reductase like domain LIT38_03235 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_03235 PF00512 His Kinase A (phospho-acceptor) domain LIT38_03235 PF00989 PAS fold LIT38_03235 PF16736 Single Cache-like LIT38_03240 PF00486 Transcriptional regulatory protein, C terminal LIT38_03240 PF00072 Response regulator receiver domain LIT38_03245 PF12796 Ankyrin repeats (3 copies) LIT38_03265 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LIT38_03265 PF09180 Prolyl-tRNA synthetase, C-terminal LIT38_03265 PF03129 Anticodon binding domain LIT38_03285 PF00293 NUDIX domain LIT38_03295 PF02567 Phenazine biosynthesis-like protein LIT38_03310 PF08281 Sigma-70, region 4 LIT38_03310 PF04542 Sigma-70 region 2 LIT38_03340 PF03060 Nitronate monooxygenase LIT38_03345 PF01738 Dienelactone hydrolase family LIT38_03355 PF00375 Sodium:dicarboxylate symporter family LIT38_03385 PF13419 Haloacid dehalogenase-like hydrolase LIT38_03390 PF04131 Putative N-acetylmannosamine-6-phosphate epimerase LIT38_03395 PF00701 Dihydrodipicolinate synthetase family LIT38_03400 PF00474 Sodium:solute symporter family LIT38_03405 PF00890 FAD binding domain LIT38_03405 PF02910 Fumarate reductase flavoprotein C-term LIT38_03410 PF00480 ROK family LIT38_03415 PF01380 SIS domain LIT38_03415 PF01418 Helix-turn-helix domain, rpiR family LIT38_03430 PF00005 ABC transporter LIT38_03440 PF04542 Sigma-70 region 2 LIT38_03440 PF08281 Sigma-70, region 4 LIT38_03445 PF13302 Acetyltransferase (GNAT) domain LIT38_03450 PF00583 Acetyltransferase (GNAT) family LIT38_03455 PF01297 Zinc-uptake complex component A periplasmic LIT38_03455 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment LIT38_03460 PF13411 MerR HTH family regulatory protein LIT38_03465 PF08240 Alcohol dehydrogenase GroES-like domain LIT38_03465 PF00107 Zinc-binding dehydrogenase LIT38_03475 PF02416 mttA/Hcf106 family LIT38_03480 PF01810 LysE type translocator LIT38_03485 PF12833 Helix-turn-helix domain LIT38_03490 PF16123 Hydroxyacylglutathione hydrolase C-terminus LIT38_03490 PF00753 Metallo-beta-lactamase superfamily LIT38_03515 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LIT38_03520 PF07501 G5 domain LIT38_03520 PF06725 3D domain LIT38_03520 PF03990 G5-linked-Ubiquitin-like domain LIT38_03525 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LIT38_03530 PF00155 Aminotransferase class I and II LIT38_03530 PF00392 Bacterial regulatory proteins, gntR family LIT38_03535 PF07690 Major Facilitator Superfamily LIT38_03540 PF00155 Aminotransferase class I and II LIT38_03555 PF03992 Antibiotic biosynthesis monooxygenase LIT38_03560 PF01022 Bacterial regulatory protein, arsR family LIT38_03570 PF00561 alpha/beta hydrolase fold LIT38_03600 PF01568 Molydopterin dinucleotide binding domain LIT38_03600 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LIT38_03600 PF00384 Molybdopterin oxidoreductase LIT38_03600 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LIT38_03600 PF00037 4Fe-4S binding domain LIT38_03605 PF07849 Protein of unknown function (DUF1641) LIT38_03610 PF06146 Phosphate-starvation-inducible E LIT38_03615 PF10057 Uncharacterized conserved protein (DUF2294) LIT38_03620 PF03992 Antibiotic biosynthesis monooxygenase LIT38_03640 PF00589 Phage integrase family LIT38_03640 PF02899 Phage integrase, N-terminal SAM-like domain LIT38_03655 PF06445 GyrI-like small molecule binding domain LIT38_03655 PF12833 Helix-turn-helix domain LIT38_03665 PF05163 DinB family LIT38_03675 PF01965 DJ-1/PfpI family LIT38_03685 PF00583 Acetyltransferase (GNAT) family LIT38_03690 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LIT38_03690 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LIT38_03695 PF04127 DNA / pantothenate metabolism flavoprotein LIT38_03695 PF02441 Flavoprotein LIT38_03725 PF00561 alpha/beta hydrolase fold LIT38_03730 PF13538 UvrD-like helicase C-terminal domain LIT38_03735 PF07690 Major Facilitator Superfamily LIT38_03740 PF01180 Dihydroorotate dehydrogenase LIT38_03745 PF13416 Bacterial extracellular solute-binding protein LIT38_03750 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_03755 PF08402 TOBE domain LIT38_03755 PF00005 ABC transporter LIT38_03760 PF01047 MarR family LIT38_03765 PF00583 Acetyltransferase (GNAT) family LIT38_03770 PF04299 Putative FMN-binding domain LIT38_03780 PF00588 SpoU rRNA Methylase family LIT38_03795 PF01638 HxlR-like helix-turn-helix LIT38_03800 PF02525 Flavodoxin-like fold LIT38_03810 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LIT38_03815 PF13302 Acetyltransferase (GNAT) domain LIT38_03820 PF00082 Subtilase family LIT38_03825 PF00186 Dihydrofolate reductase LIT38_03855 PF00583 Acetyltransferase (GNAT) family LIT38_03865 PF00144 Beta-lactamase LIT38_03895 PF06906 Protein of unknown function (DUF1272) LIT38_03900 PF00857 Isochorismatase family LIT38_03905 PF01037 Lrp/AsnC ligand binding domain LIT38_03910 PF11553 Protein of unknown function (DUF3231) LIT38_03920 PF05163 DinB family LIT38_03925 PF00302 Chloramphenicol acetyltransferase LIT38_03955 PF00005 ABC transporter LIT38_03955 PF13732 Domain of unknown function (DUF4162) LIT38_03960 PF01061 ABC-2 type transporter LIT38_03970 PF00005 ABC transporter LIT38_03975 PF12679 ABC-2 family transporter protein LIT38_03980 PF00296 Luciferase-like monooxygenase LIT38_04000 PF04463 Protein of unknown function (DUF523) LIT38_04005 PF05163 DinB family LIT38_04010 PF00293 NUDIX domain LIT38_04010 PF13344 Haloacid dehalogenase-like hydrolase LIT38_04020 PF00924 Mechanosensitive ion channel LIT38_04040 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LIT38_04050 PF05504 Spore germination B3/ GerAC like, C-terminal LIT38_04080 PF13460 NAD(P)H-binding LIT38_04090 PF00072 Response regulator receiver domain LIT38_04090 PF00990 Diguanylate cyclase, GGDEF domain LIT38_04135 PF03796 DnaB-like helicase C terminal domain LIT38_04135 PF00772 DnaB-like helicase N terminal domain LIT38_04150 PF03323 Bacillus/Clostridium GerA spore germination protein LIT38_04160 PF01522 Polysaccharide deacetylase LIT38_04165 PF04143 Sulphur transport LIT38_04170 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain LIT38_04170 PF02129 X-Pro dipeptidyl-peptidase (S15 family) LIT38_04180 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LIT38_04190 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain LIT38_04190 PF00730 HhH-GPD superfamily base excision DNA repair protein LIT38_04195 PF02805 Metal binding domain of Ada LIT38_04195 PF12833 Helix-turn-helix domain LIT38_04200 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LIT38_04200 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LIT38_04210 PF12833 Helix-turn-helix domain LIT38_04210 PF07883 Cupin domain LIT38_04215 PF00892 EamA-like transporter family LIT38_04225 PF07690 Major Facilitator Superfamily LIT38_04235 PF07729 FCD domain LIT38_04235 PF00392 Bacterial regulatory proteins, gntR family LIT38_04250 PF02361 Cobalt transport protein LIT38_04255 PF00005 ABC transporter LIT38_04260 PF00005 ABC transporter LIT38_04280 PF00072 Response regulator receiver domain LIT38_04280 PF00486 Transcriptional regulatory protein, C terminal LIT38_04285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_04290 PF00005 ABC transporter LIT38_04295 PF02687 FtsX-like permease family LIT38_04305 PF16363 GDP-mannose 4,6 dehydratase LIT38_04310 PF00483 Nucleotidyl transferase LIT38_04320 PF00535 Glycosyl transferase family 2 LIT38_04340 PF00313 'Cold-shock' DNA-binding domain LIT38_04345 PF13411 MerR HTH family regulatory protein LIT38_04345 PF06445 GyrI-like small molecule binding domain LIT38_04350 PF07690 Major Facilitator Superfamily LIT38_04380 PF03449 Transcription elongation factor, N-terminal LIT38_04380 PF01272 Transcription elongation factor, GreA/GreB, C-term LIT38_04385 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LIT38_04415 PF13180 PDZ domain LIT38_04425 PF12704 MacB-like periplasmic core domain LIT38_04425 PF02687 FtsX-like permease family LIT38_04430 PF00005 ABC transporter LIT38_04435 PF00440 Bacterial regulatory proteins, tetR family LIT38_04435 PF08359 YsiA-like protein, C-terminal region LIT38_04440 PF00266 Aminotransferase class-V LIT38_04445 PF04199 Putative cyclase LIT38_04450 PF03301 Tryptophan 2,3-dioxygenase LIT38_04455 PF00209 Sodium:neurotransmitter symporter family LIT38_04460 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain LIT38_04460 PF01740 STAS domain LIT38_04470 PF04070 Domain of unknown function (DUF378) LIT38_04475 PF01435 Peptidase family M48 LIT38_04480 PF08876 Domain of unknown function (DUF1836) LIT38_04495 PF02687 FtsX-like permease family LIT38_04495 PF12704 MacB-like periplasmic core domain LIT38_04500 PF00005 ABC transporter LIT38_04505 PF05684 Protein of unknown function (DUF819) LIT38_04510 PF00860 Permease family LIT38_04515 PF04439 Streptomycin adenylyltransferase LIT38_04520 PF00501 AMP-binding enzyme LIT38_04520 PF13193 AMP-binding enzyme C-terminal domain LIT38_04525 PF00376 MerR family regulatory protein LIT38_04525 PF09278 MerR, DNA binding LIT38_04545 PF13411 MerR HTH family regulatory protein LIT38_04545 PF07739 TipAS antibiotic-recognition domain LIT38_04565 PF00873 AcrB/AcrD/AcrF family LIT38_04590 PF03594 Benzoate membrane transport protein LIT38_04595 PF17853 GGDEF-like domain LIT38_04595 PF05651 Putative sugar diacid recognition LIT38_04595 PF13556 PucR C-terminal helix-turn-helix domain LIT38_04600 PF00171 Aldehyde dehydrogenase family LIT38_04605 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LIT38_04605 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LIT38_04620 PF01546 Peptidase family M20/M25/M40 LIT38_04620 PF07687 Peptidase dimerisation domain LIT38_04625 PF00583 Acetyltransferase (GNAT) family LIT38_04630 PF16868 NMT1-like family LIT38_04640 PF00392 Bacterial regulatory proteins, gntR family LIT38_04640 PF07729 FCD domain LIT38_04645 PF01565 FAD binding domain LIT38_04645 PF02913 FAD linked oxidases, C-terminal domain LIT38_04650 PF13183 4Fe-4S dicluster domain LIT38_04650 PF02754 Cysteine-rich domain LIT38_04655 PF01266 FAD dependent oxidoreductase LIT38_04670 PF00072 Response regulator receiver domain LIT38_04670 PF04397 LytTr DNA-binding domain LIT38_04675 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain LIT38_04675 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain LIT38_04680 PF10672 S-adenosylmethionine-dependent methyltransferase LIT38_04680 PF17785 PUA-like domain LIT38_04685 PF03480 Bacterial extracellular solute-binding protein, family 7 LIT38_04690 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LIT38_04690 PF17203 Single cache domain 3 LIT38_04690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_04695 PF08279 HTH domain LIT38_04695 PF00072 Response regulator receiver domain LIT38_04700 PF00375 Sodium:dicarboxylate symporter family LIT38_04705 PF07690 Major Facilitator Superfamily LIT38_04710 PF01740 STAS domain LIT38_04735 PF10502 Signal peptidase, peptidase S26 LIT38_04740 PF00300 Histidine phosphatase superfamily (branch 1) LIT38_04745 PF00989 PAS fold LIT38_04745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_04745 PF13426 PAS domain LIT38_04745 PF00512 His Kinase A (phospho-acceptor) domain LIT38_04745 PF13188 PAS domain LIT38_04760 PF06628 Catalase-related immune-responsive LIT38_04760 PF18011 C-terminal domain found in long catalases LIT38_04760 PF00199 Catalase LIT38_04765 PF06445 GyrI-like small molecule binding domain LIT38_04765 PF12833 Helix-turn-helix domain LIT38_04770 PF02028 BCCT, betaine/carnitine/choline family transporter LIT38_04775 PF05163 DinB family LIT38_04785 PF00115 Cytochrome C and Quinol oxidase polypeptide I LIT38_04795 PF01699 Sodium/calcium exchanger protein LIT38_04810 PF07733 Bacterial DNA polymerase III alpha NTPase domain LIT38_04810 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LIT38_04810 PF14579 Helix-hairpin-helix motif LIT38_04810 PF02811 PHP domain LIT38_04810 PF00929 Exonuclease LIT38_04815 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_04815 PF00989 PAS fold LIT38_04815 PF13188 PAS domain LIT38_04815 PF13426 PAS domain LIT38_04815 PF00512 His Kinase A (phospho-acceptor) domain LIT38_04820 PF09962 Uncharacterized conserved protein (DUF2196) LIT38_04835 PF02558 Ketopantoate reductase PanE/ApbA LIT38_04835 PF08546 Ketopantoate reductase PanE/ApbA C terminal LIT38_04840 PF02554 Carbon starvation protein CstA LIT38_04845 PF04397 LytTr DNA-binding domain LIT38_04845 PF00072 Response regulator receiver domain LIT38_04850 PF07694 5TMR of 5TMR-LYT LIT38_04850 PF13492 GAF domain LIT38_04850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_04850 PF06580 Histidine kinase LIT38_04865 PF00293 NUDIX domain LIT38_04880 PF00557 Metallopeptidase family M24 LIT38_04890 PF01479 S4 domain LIT38_04890 PF00579 tRNA synthetases class I (W and Y) LIT38_04895 PF08240 Alcohol dehydrogenase GroES-like domain LIT38_04895 PF00107 Zinc-binding dehydrogenase LIT38_04900 PF10282 Lactonase, 7-bladed beta-propeller LIT38_04915 PF01740 STAS domain LIT38_04915 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain LIT38_04920 PF01636 Phosphotransferase enzyme family LIT38_04925 PF01008 Initiation factor 2 subunit family LIT38_04930 PF00082 Subtilase family LIT38_04935 PF00596 Class II Aldolase and Adducin N-terminal domain LIT38_04940 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIT38_04940 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LIT38_04950 PF07690 Major Facilitator Superfamily LIT38_04955 PF01235 Sodium:alanine symporter family LIT38_04965 PF02416 mttA/Hcf106 family LIT38_04970 PF00902 Sec-independent protein translocase protein (TatC) LIT38_04975 PF00082 Subtilase family LIT38_04980 PF13823 Alcohol dehydrogenase GroES-associated LIT38_04980 PF08240 Alcohol dehydrogenase GroES-like domain LIT38_04980 PF00107 Zinc-binding dehydrogenase LIT38_04985 PF13426 PAS domain LIT38_04985 PF00512 His Kinase A (phospho-acceptor) domain LIT38_04985 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_04985 PF13188 PAS domain LIT38_04985 PF00989 PAS fold LIT38_04990 PF02872 5'-nucleotidase, C-terminal domain LIT38_04990 PF00149 Calcineurin-like phosphoesterase LIT38_04995 PF05547 Immune inhibitor A peptidase M6 LIT38_05000 PF00270 DEAD/DEAH box helicase LIT38_05000 PF00271 Helicase conserved C-terminal domain LIT38_05005 PF01425 Amidase LIT38_05010 PF01266 FAD dependent oxidoreductase LIT38_05010 PF00355 Rieske [2Fe-2S] domain LIT38_05020 PF03845 Spore germination protein LIT38_05025 PF03323 Bacillus/Clostridium GerA spore germination protein LIT38_05030 PF05504 Spore germination B3/ GerAC like, C-terminal LIT38_05035 PF01053 Cys/Met metabolism PLP-dependent enzyme LIT38_05040 PF06827 Zinc finger found in FPG and IleRS LIT38_05040 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LIT38_05040 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LIT38_05050 PF03737 Aldolase/RraA LIT38_05060 PF04294 VanW like protein LIT38_05065 PF13243 Squalene-hopene cyclase C-terminal domain LIT38_05065 PF13249 Squalene-hopene cyclase N-terminal domain LIT38_05080 PF04012 PspA/IM30 family LIT38_05090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_05090 PF07730 Histidine kinase LIT38_05095 PF00196 Bacterial regulatory proteins, luxR family LIT38_05095 PF00072 Response regulator receiver domain LIT38_05105 PF00005 ABC transporter LIT38_05105 PF12848 ABC transporter LIT38_05105 PF16326 ABC transporter C-terminal domain LIT38_05110 PF00158 Sigma-54 interaction domain LIT38_05115 PF00202 Aminotransferase class-III LIT38_05120 PF07670 Nucleoside recognition LIT38_05125 PF01943 Polysaccharide biosynthesis protein LIT38_05140 PF01544 CorA-like Mg2+ transporter protein LIT38_05150 PF08361 MAATS-type transcriptional repressor, C-terminal region LIT38_05150 PF00440 Bacterial regulatory proteins, tetR family LIT38_05155 PF03061 Thioesterase superfamily LIT38_05185 PF13396 Phospholipase_D-nuclease N-terminal LIT38_05185 PF13091 PLD-like domain LIT38_05190 PF01523 Putative modulator of DNA gyrase LIT38_05195 PF01523 Putative modulator of DNA gyrase LIT38_05200 PF13302 Acetyltransferase (GNAT) domain LIT38_05215 PF00902 Sec-independent protein translocase protein (TatC) LIT38_05220 PF02416 mttA/Hcf106 family LIT38_05225 PF05199 GMC oxidoreductase LIT38_05225 PF00732 GMC oxidoreductase LIT38_05230 PF13618 Gluconate 2-dehydrogenase subunit 3 LIT38_05240 PF01027 Inhibitor of apoptosis-promoting Bax1 LIT38_05245 PF01741 Large-conductance mechanosensitive channel, MscL LIT38_05250 PF14489 QueF-like protein LIT38_05260 PF00474 Sodium:solute symporter family LIT38_05270 PF02073 Thermophilic metalloprotease (M29) LIT38_05280 PF01751 Toprim domain LIT38_05280 PF01131 DNA topoisomerase LIT38_05285 PF01740 STAS domain LIT38_05290 PF00221 Aromatic amino acid lyase LIT38_05305 PF09350 Domain of unknown function (DUF1992) LIT38_05320 PF01618 MotA/TolQ/ExbB proton channel family LIT38_05325 PF13677 Membrane MotB of proton-channel complex MotA/MotB LIT38_05325 PF00691 OmpA family LIT38_05330 PF07690 Major Facilitator Superfamily LIT38_05335 PF01047 MarR family LIT38_05340 PF01235 Sodium:alanine symporter family LIT38_05345 PF00294 pfkB family carbohydrate kinase LIT38_05350 PF04227 Indigoidine synthase A like protein LIT38_05355 PF04203 Sortase domain LIT38_05375 PF12389 Camelysin metallo-endopeptidase LIT38_05400 PF01381 Helix-turn-helix LIT38_05400 PF08671 Anti-repressor SinI LIT38_05410 PF01494 FAD binding domain LIT38_05415 PF05175 Methyltransferase small domain LIT38_05420 PF07702 UTRA domain LIT38_05420 PF00392 Bacterial regulatory proteins, gntR family LIT38_05425 PF01965 DJ-1/PfpI family LIT38_05430 PF06569 Protein of unknown function (DUF1128) LIT38_05440 PF03631 Virulence factor BrkB LIT38_05450 PF07690 Major Facilitator Superfamily LIT38_05465 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIT38_05465 PF02770 Acyl-CoA dehydrogenase, middle domain LIT38_05465 PF08028 Acyl-CoA dehydrogenase, C-terminal domain LIT38_05470 PF01699 Sodium/calcium exchanger protein LIT38_05475 PF14167 YfkD-like protein LIT38_05480 PF08756 YfkB-like domain LIT38_05480 PF04055 Radical SAM superfamily LIT38_05500 PF05683 Fumarase C-terminus LIT38_05500 PF05681 Fumarate hydratase (Fumerase) LIT38_05505 PF01522 Polysaccharide deacetylase LIT38_05510 PF00730 HhH-GPD superfamily base excision DNA repair protein LIT38_05515 PF01938 TRAM domain LIT38_05515 PF05958 tRNA (Uracil-5-)-methyltransferase LIT38_05520 PF02899 Phage integrase, N-terminal SAM-like domain LIT38_05520 PF00589 Phage integrase family LIT38_05555 PF01207 Dihydrouridine synthase (Dus) LIT38_05565 PF02696 Uncharacterized ACR, YdiU/UPF0061 family LIT38_05580 PF06983 3-demethylubiquinone-9 3-methyltransferase LIT38_05595 PF00255 Glutathione peroxidase LIT38_05605 PF07729 FCD domain LIT38_05605 PF00392 Bacterial regulatory proteins, gntR family LIT38_05610 PF02652 L-lactate permease LIT38_05615 PF02754 Cysteine-rich domain LIT38_05620 PF11870 Domain of unknown function (DUF3390) LIT38_05620 PF02589 LUD domain LIT38_05620 PF13183 4Fe-4S dicluster domain LIT38_05625 PF02589 LUD domain LIT38_05635 PF01593 Flavin containing amine oxidoreductase LIT38_05645 PF04343 Protein of unknown function, DUF488 LIT38_05650 PF01979 Amidohydrolase family LIT38_05655 PF01979 Amidohydrolase family LIT38_05660 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LIT38_05665 PF07969 Amidohydrolase family LIT38_05670 PF01979 Amidohydrolase family LIT38_05675 PF01546 Peptidase family M20/M25/M40 LIT38_05680 PF07883 Cupin domain LIT38_05680 PF05899 Protein of unknown function (DUF861) LIT38_05695 PF12833 Helix-turn-helix domain LIT38_05695 PF00072 Response regulator receiver domain LIT38_05700 PF07694 5TMR of 5TMR-LYT LIT38_05700 PF13492 GAF domain LIT38_05700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_05700 PF06580 Histidine kinase LIT38_05705 PF00005 ABC transporter LIT38_05705 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LIT38_05710 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LIT38_05710 PF00005 ABC transporter LIT38_05715 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_05720 PF12911 N-terminal TM domain of oligopeptide transport permease C LIT38_05720 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_05725 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LIT38_05730 PF07969 Amidohydrolase family LIT38_05735 PF07969 Amidohydrolase family LIT38_05740 PF12796 Ankyrin repeats (3 copies) LIT38_05750 PF12697 Alpha/beta hydrolase family LIT38_05765 PF01645 Conserved region in glutamate synthase LIT38_05770 PF11066 Protein of unknown function (DUF2867) LIT38_05770 PF13460 NAD(P)H-binding LIT38_05790 PF17853 GGDEF-like domain LIT38_05790 PF13556 PucR C-terminal helix-turn-helix domain LIT38_05795 PF00474 Sodium:solute symporter family LIT38_05800 PF01619 Proline dehydrogenase LIT38_05805 PF13458 Periplasmic binding protein LIT38_05810 PF02653 Branched-chain amino acid transport system / permease component LIT38_05815 PF11862 Domain of unknown function (DUF3382) LIT38_05815 PF02653 Branched-chain amino acid transport system / permease component LIT38_05820 PF00005 ABC transporter LIT38_05820 PF12399 Branched-chain amino acid ATP-binding cassette transporter LIT38_05825 PF00005 ABC transporter LIT38_05830 PF03009 Glycerophosphoryl diester phosphodiesterase family LIT38_05835 PF00664 ABC transporter transmembrane region LIT38_05835 PF00005 ABC transporter LIT38_05840 PF00005 ABC transporter LIT38_05840 PF00664 ABC transporter transmembrane region LIT38_05845 PF10138 vWA found in TerF C terminus LIT38_05850 PF01546 Peptidase family M20/M25/M40 LIT38_05850 PF07687 Peptidase dimerisation domain LIT38_05870 PF01370 NAD dependent epimerase/dehydratase family LIT38_05870 PF08338 Domain of unknown function (DUF1731) LIT38_05875 PF02631 RecX family LIT38_05880 PF00106 short chain dehydrogenase LIT38_05885 PF08838 Protein of unknown function (DUF1811) LIT38_05895 PF08176 Small acid-soluble spore protein K family LIT38_05900 PF14043 WVELL protein LIT38_05905 PF04307 LexA-binding, inner membrane-associated putative hydrolase LIT38_05910 PF14815 NUDIX domain LIT38_05910 PF00730 HhH-GPD superfamily base excision DNA repair protein LIT38_05930 PF14182 YgaB-like protein LIT38_05935 PF04167 Protein of unknown function (DUF402) LIT38_05940 PF00664 ABC transporter transmembrane region LIT38_05940 PF00005 ABC transporter LIT38_05945 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LIT38_05945 PF00005 ABC transporter LIT38_05950 PF00005 ABC transporter LIT38_05950 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LIT38_05955 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LIT38_05960 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_05965 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_05965 PF12911 N-terminal TM domain of oligopeptide transport permease C LIT38_05970 PF06081 Aromatic acid exporter family member 1 LIT38_05975 PF04898 Glutamate synthase central domain LIT38_05975 PF01645 Conserved region in glutamate synthase LIT38_05975 PF00310 Glutamine amidotransferases class-II LIT38_05975 PF01493 GXGXG motif LIT38_05980 PF00202 Aminotransferase class-III LIT38_05985 PF00005 ABC transporter LIT38_06000 PF07885 Ion channel LIT38_06005 PF00578 AhpC/TSA family LIT38_06015 PF01923 Cobalamin adenosyltransferase LIT38_06020 PF01475 Ferric uptake regulator family LIT38_06025 PF11023 Zinc-ribbon containing domain LIT38_06030 PF14540 Nucleotidyltransferase-like LIT38_06030 PF18576 Helix-turn-helix domain LIT38_06135 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_06140 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_06145 PF01547 Bacterial extracellular solute-binding protein LIT38_06150 PF02743 Cache domain LIT38_06150 PF06580 Histidine kinase LIT38_06150 PF00672 HAMP domain LIT38_06150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_06155 PF00072 Response regulator receiver domain LIT38_06155 PF12833 Helix-turn-helix domain LIT38_06165 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LIT38_06165 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LIT38_06170 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LIT38_06170 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LIT38_06190 PF08331 Domain of unknown function (DUF1730) LIT38_06195 PF12671 Putative amidase domain LIT38_06200 PF00588 SpoU rRNA Methylase family LIT38_06205 PF00881 Nitroreductase family LIT38_06210 PF08298 PrkA AAA domain LIT38_06210 PF06798 PrkA serine protein kinase C-terminal domain LIT38_06225 PF04285 Protein of unknown function (DUF444) LIT38_06240 PF00742 Homoserine dehydrogenase LIT38_06240 PF01842 ACT domain LIT38_06240 PF03447 Homoserine dehydrogenase, NAD binding domain LIT38_06250 PF00999 Sodium/hydrogen exchanger family LIT38_06255 PF02245 Methylpurine-DNA glycosylase (MPG) LIT38_06260 PF03807 NADP oxidoreductase coenzyme F420-dependent LIT38_06260 PF14748 Pyrroline-5-carboxylate reductase dimerisation LIT38_06265 PF00375 Sodium:dicarboxylate symporter family LIT38_06270 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LIT38_06270 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LIT38_06275 PF00860 Permease family LIT38_06280 PF01546 Peptidase family M20/M25/M40 LIT38_06285 PF13419 Haloacid dehalogenase-like hydrolase LIT38_06290 PF01418 Helix-turn-helix domain, rpiR family LIT38_06290 PF01380 SIS domain LIT38_06295 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LIT38_06295 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LIT38_06300 PF02447 GntP family permease LIT38_06305 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LIT38_06305 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LIT38_06310 PF01384 Phosphate transporter family LIT38_06315 PF01865 Protein of unknown function DUF47 LIT38_06330 PF13538 UvrD-like helicase C-terminal domain LIT38_06335 PF00248 Aldo/keto reductase family LIT38_06340 PF04226 Transglycosylase associated protein LIT38_06345 PF00849 RNA pseudouridylate synthase LIT38_06345 PF01479 S4 domain LIT38_06355 PF00085 Thioredoxin LIT38_06360 PF02600 Disulfide bond formation protein DsbB LIT38_06365 PF00795 Carbon-nitrogen hydrolase LIT38_06365 PF00583 Acetyltransferase (GNAT) family LIT38_06370 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I LIT38_06370 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II LIT38_06370 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III LIT38_06370 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain LIT38_06375 PF13185 GAF domain LIT38_06375 PF07730 Histidine kinase LIT38_06380 PF00196 Bacterial regulatory proteins, luxR family LIT38_06380 PF00072 Response regulator receiver domain LIT38_06385 PF03358 NADPH-dependent FMN reductase LIT38_06390 PF14148 YhdB-like protein LIT38_06400 PF00072 Response regulator receiver domain LIT38_06400 PF00486 Transcriptional regulatory protein, C terminal LIT38_06405 PF00672 HAMP domain LIT38_06405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_06405 PF00512 His Kinase A (phospho-acceptor) domain LIT38_06420 PF04293 SpoVR like protein LIT38_06425 PF02583 Metal-sensitive transcriptional repressor LIT38_06430 PF00581 Rhodanese-like domain LIT38_06435 PF00581 Rhodanese-like domain LIT38_06440 PF13686 DsrE/DsrF/DrsH-like family LIT38_06445 PF00581 Rhodanese-like domain LIT38_06445 PF01206 Sulfurtransferase TusA LIT38_06450 PF00753 Metallo-beta-lactamase superfamily LIT38_06450 PF00581 Rhodanese-like domain LIT38_06455 PF01206 Sulfurtransferase TusA LIT38_06460 PF01925 Sulfite exporter TauE/SafE LIT38_06465 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LIT38_06465 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LIT38_06470 PF03631 Virulence factor BrkB LIT38_06480 PF00860 Permease family LIT38_06485 PF01545 Cation efflux family LIT38_06485 PF16916 Dimerisation domain of Zinc Transporter LIT38_06490 PF01022 Bacterial regulatory protein, arsR family LIT38_06500 PF00072 Response regulator receiver domain LIT38_06500 PF00486 Transcriptional regulatory protein, C terminal LIT38_06505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_06505 PF00672 HAMP domain LIT38_06505 PF00512 His Kinase A (phospho-acceptor) domain LIT38_06510 PF01595 Cyclin M transmembrane N-terminal domain LIT38_06510 PF00571 CBS domain LIT38_06510 PF03471 Transporter associated domain LIT38_06525 PF03471 Transporter associated domain LIT38_06525 PF01595 Cyclin M transmembrane N-terminal domain LIT38_06525 PF00571 CBS domain LIT38_06530 PF13302 Acetyltransferase (GNAT) domain LIT38_06535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_06535 PF00512 His Kinase A (phospho-acceptor) domain LIT38_06535 PF00989 PAS fold LIT38_06545 PF00582 Universal stress protein family LIT38_06550 PF00912 Transglycosylase LIT38_06550 PF00905 Penicillin binding protein transpeptidase domain LIT38_06565 PF07690 Major Facilitator Superfamily LIT38_06570 PF04542 Sigma-70 region 2 LIT38_06570 PF08281 Sigma-70, region 4 LIT38_06590 PF01906 Putative heavy-metal-binding LIT38_06600 PF00664 ABC transporter transmembrane region LIT38_06600 PF00005 ABC transporter LIT38_06605 PF00005 ABC transporter LIT38_06605 PF00664 ABC transporter transmembrane region LIT38_06610 PF10415 Fumarase C C-terminus LIT38_06610 PF00206 Lyase LIT38_06615 PF00269 Small, acid-soluble spore proteins, alpha/beta type LIT38_06625 PF03459 TOBE domain LIT38_06625 PF17912 MalK OB fold domain LIT38_06625 PF00005 ABC transporter LIT38_06630 PF13556 PucR C-terminal helix-turn-helix domain LIT38_06635 PF02583 Metal-sensitive transcriptional repressor LIT38_06645 PF17277 Family of unknown function (DUF5342) LIT38_06655 PF14398 YheC/D like ATP-grasp LIT38_06660 PF14398 YheC/D like ATP-grasp LIT38_06665 PF14398 YheC/D like ATP-grasp LIT38_06670 PF14398 YheC/D like ATP-grasp LIT38_06675 PF04286 Protein of unknown function (DUF445) LIT38_06680 PF06133 Control of competence regulator ComK, YlbF/YmcA LIT38_06690 PF00269 Small, acid-soluble spore proteins, alpha/beta type LIT38_06695 PF02361 Cobalt transport protein LIT38_06700 PF00005 ABC transporter LIT38_06705 PF09819 ABC-type cobalt transport system, permease component LIT38_06710 PF07615 YKOF-related Family LIT38_06720 PF04055 Radical SAM superfamily LIT38_06725 PF13193 AMP-binding enzyme C-terminal domain LIT38_06725 PF00501 AMP-binding enzyme LIT38_06730 PF00378 Enoyl-CoA hydratase/isomerase LIT38_06740 PF00005 ABC transporter LIT38_06740 PF13732 Domain of unknown function (DUF4162) LIT38_06750 PF01810 LysE type translocator LIT38_06755 PF00149 Calcineurin-like phosphoesterase LIT38_06760 PF13514 AAA domain LIT38_06765 PF03788 LrgA family LIT38_06770 PF04172 LrgB-like family LIT38_06775 PF01966 HD domain LIT38_06775 PF01336 OB-fold nucleic acid binding domain LIT38_06780 PF14147 Sporulation protein YhaL LIT38_06785 PF05698 Bacterial trigger factor protein (TF) C-terminus LIT38_06790 PF09680 Family of unknown function LIT38_06810 PF01047 MarR family LIT38_06825 PF17099 Tryptophan transporter TrpP LIT38_06830 PF00266 Aminotransferase class-V LIT38_06835 PF01230 HIT domain LIT38_06840 PF00005 ABC transporter LIT38_06845 PF05975 Bacterial ABC transporter protein EcsB LIT38_06850 PF12787 EcsC protein family LIT38_06855 PF07687 Peptidase dimerisation domain LIT38_06855 PF01546 Peptidase family M20/M25/M40 LIT38_06860 PF01569 PAP2 superfamily LIT38_06875 PF00672 HAMP domain LIT38_06875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_06875 PF07730 Histidine kinase LIT38_06880 PF00196 Bacterial regulatory proteins, luxR family LIT38_06880 PF00072 Response regulator receiver domain LIT38_06885 PF03992 Antibiotic biosynthesis monooxygenase LIT38_06890 PF01208 Uroporphyrinogen decarboxylase (URO-D) LIT38_06895 PF00762 Ferrochelatase LIT38_06900 PF01593 Flavin containing amine oxidoreductase LIT38_06905 PF00440 Bacterial regulatory proteins, tetR family LIT38_06905 PF17932 Tetracyclin repressor-like, C-terminal domain LIT38_06915 PF14149 YhfH-like protein LIT38_06920 PF12706 Beta-lactamase superfamily domain LIT38_06925 PF03099 Biotin/lipoate A/B protein ligase family LIT38_06925 PF10437 Bacterial lipoate protein ligase C-terminus LIT38_06930 PF13193 AMP-binding enzyme C-terminal domain LIT38_06930 PF00501 AMP-binding enzyme LIT38_06935 PF00378 Enoyl-CoA hydratase/isomerase LIT38_06950 PF00005 ABC transporter LIT38_06950 PF09383 NIL domain LIT38_06955 PF07883 Cupin domain LIT38_06955 PF01381 Helix-turn-helix LIT38_06960 PF03591 AzlC protein LIT38_06970 PF01435 Peptidase family M48 LIT38_06970 PF16491 CAAX prenyl protease N-terminal, five membrane helices LIT38_06985 PF06338 ComK protein LIT38_06995 PF07676 WD40-like Beta Propeller Repeat LIT38_06995 PF00326 Prolyl oligopeptidase family LIT38_07000 PF03816 Cell envelope-related transcriptional attenuator domain LIT38_07005 PF09335 SNARE associated Golgi protein LIT38_07010 PF10502 Signal peptidase, peptidase S26 LIT38_07025 PF02803 Thiolase, C-terminal domain LIT38_07025 PF00108 Thiolase, N-terminal domain LIT38_07035 PF07690 Major Facilitator Superfamily LIT38_07040 PF12705 PD-(D/E)XK nuclease superfamily LIT38_07045 PF12705 PD-(D/E)XK nuclease superfamily LIT38_07045 PF00580 UvrD/REP helicase N-terminal domain LIT38_07045 PF13361 UvrD-like helicase C-terminal domain LIT38_07055 PF10676 Spore germination protein gerPA/gerPF LIT38_07070 PF10737 Spore germination protein GerPC LIT38_07075 PF10803 Spore germination GerPB LIT38_07080 PF10676 Spore germination protein gerPA/gerPF LIT38_07085 PF13193 AMP-binding enzyme C-terminal domain LIT38_07085 PF00501 AMP-binding enzyme LIT38_07090 PF04235 Protein of unknown function (DUF418) LIT38_07095 PF01557 Fumarylacetoacetate (FAA) hydrolase family LIT38_07100 PF07457 Protein of unknown function (DUF1516) LIT38_07105 PF00990 Diguanylate cyclase, GGDEF domain LIT38_07105 PF00563 EAL domain LIT38_07105 PF03707 Bacterial signalling protein N terminal repeat LIT38_07115 PF13537 Glutamine amidotransferase domain LIT38_07115 PF00733 Asparagine synthase LIT38_07120 PF01554 MatE LIT38_07125 PF00128 Alpha amylase, catalytic domain LIT38_07125 PF02903 Alpha amylase, N-terminal ig-like domain LIT38_07125 PF16657 Maltogenic Amylase, C-terminal domain LIT38_07130 PF13416 Bacterial extracellular solute-binding protein LIT38_07135 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_07140 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_07145 PF01373 Glycosyl hydrolase family 14 LIT38_07145 PF00128 Alpha amylase, catalytic domain LIT38_07145 PF03423 Carbohydrate binding domain (family 25) LIT38_07150 PF00356 Bacterial regulatory proteins, lacI family LIT38_07150 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LIT38_07160 PF13302 Acetyltransferase (GNAT) domain LIT38_07165 PF13492 GAF domain LIT38_07165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_07165 PF07730 Histidine kinase LIT38_07170 PF00196 Bacterial regulatory proteins, luxR family LIT38_07170 PF00072 Response regulator receiver domain LIT38_07175 PF02225 PA domain LIT38_07175 PF00082 Subtilase family LIT38_07175 PF05922 Peptidase inhibitor I9 LIT38_07175 PF13860 FlgD Ig-like domain LIT38_07180 PF06445 GyrI-like small molecule binding domain LIT38_07180 PF13411 MerR HTH family regulatory protein LIT38_07185 PF00324 Amino acid permease LIT38_07190 PF00171 Aldehyde dehydrogenase family LIT38_07195 PF00465 Iron-containing alcohol dehydrogenase LIT38_07200 PF00491 Arginase family LIT38_07220 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_07225 PF08402 TOBE domain LIT38_07225 PF00005 ABC transporter LIT38_07230 PF08220 DeoR-like helix-turn-helix domain LIT38_07230 PF00455 DeoR C terminal sensor domain LIT38_07240 PF00893 Small Multidrug Resistance protein LIT38_07245 PF00893 Small Multidrug Resistance protein LIT38_07250 PF00291 Pyridoxal-phosphate dependent enzyme LIT38_07255 PF04461 Protein of unknown function (DUF520) LIT38_07260 PF17783 CvfB-like winged helix domain LIT38_07260 PF13509 S1 domain LIT38_07270 PF02645 Uncharacterised protein, DegV family COG1307 LIT38_07275 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LIT38_07275 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LIT38_07285 PF12758 Protein of unknown function (DUF3813) LIT38_07300 PF00326 Prolyl oligopeptidase family LIT38_07305 PF01883 Iron-sulfur cluster assembly protein LIT38_07310 PF04055 Radical SAM superfamily LIT38_07310 PF13186 Iron-sulfur cluster-binding domain LIT38_07315 PF00027 Cyclic nucleotide-binding domain LIT38_07315 PF00325 Bacterial regulatory proteins, crp family LIT38_07320 PF04055 Radical SAM superfamily LIT38_07320 PF06463 Molybdenum Cofactor Synthesis C LIT38_07325 PF01814 Hemerythrin HHE cation binding domain LIT38_07325 PF04405 Domain of Unknown function (DUF542) LIT38_07330 PF03453 MoeA N-terminal region (domain I and II) LIT38_07330 PF00994 Probable molybdopterin binding domain LIT38_07330 PF03454 MoeA C-terminal region (domain IV) LIT38_07335 PF03205 Molybdopterin guanine dinucleotide synthesis protein B LIT38_07340 PF14256 YwiC-like protein LIT38_07345 PF02774 Semialdehyde dehydrogenase, dimerisation domain LIT38_07345 PF01118 Semialdehyde dehydrogenase, NAD binding domain LIT38_07350 PF01960 ArgJ family LIT38_07355 PF00696 Amino acid kinase family LIT38_07360 PF00202 Aminotransferase class-III LIT38_07365 PF00117 Glutamine amidotransferase class-I LIT38_07365 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LIT38_07370 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LIT38_07370 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LIT38_07375 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LIT38_07375 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LIT38_07380 PF02673 Bacitracin resistance protein BacA LIT38_07385 PF14168 YjzC-like protein LIT38_07390 PF17871 AAA lid domain LIT38_07390 PF07724 AAA domain (Cdc48 subfamily) LIT38_07390 PF00004 ATPase family associated with various cellular activities (AAA) LIT38_07390 PF10431 C-terminal, D2-small domain, of ClpB protein LIT38_07390 PF02861 Clp amino terminal domain, pathogenicity island component LIT38_07410 PF02608 ABC transporter substrate-binding protein PnrA-like LIT38_07415 PF10815 ComZ LIT38_07430 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LIT38_07430 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LIT38_07435 PF02801 Beta-ketoacyl synthase, C-terminal domain LIT38_07435 PF00109 Beta-ketoacyl synthase, N-terminal domain LIT38_07440 PF10026 Predicted Zn-dependent protease (DUF2268) LIT38_07445 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LIT38_07445 PF00005 ABC transporter LIT38_07450 PF00005 ABC transporter LIT38_07450 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LIT38_07455 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LIT38_07460 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_07465 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_07465 PF12911 N-terminal TM domain of oligopeptide transport permease C LIT38_07475 PF12227 Protein of unknown function (DUF3603) LIT38_07480 PF00579 tRNA synthetases class I (W and Y) LIT38_07485 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LIT38_07490 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_07495 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_07495 PF12911 N-terminal TM domain of oligopeptide transport permease C LIT38_07500 PF00005 ABC transporter LIT38_07500 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LIT38_07505 PF00005 ABC transporter LIT38_07505 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LIT38_07520 PF13508 Acetyltransferase (GNAT) domain LIT38_07525 PF03960 ArsC family LIT38_07530 PF05389 Negative regulator of genetic competence (MecA) LIT38_07540 PF08439 Oligopeptidase F LIT38_07540 PF01432 Peptidase family M3 LIT38_07550 PF01152 Bacterial-like globin LIT38_07555 PF01464 Transglycosylase SLT domain LIT38_07560 PF01928 CYTH domain LIT38_07570 PF04607 Region found in RelA / SpoT proteins LIT38_07575 PF01513 ATP-NAD kinase LIT38_07580 PF00849 RNA pseudouridylate synthase LIT38_07585 PF00149 Calcineurin-like phosphoesterase LIT38_07590 PF00571 CBS domain LIT38_07590 PF03448 MgtE intracellular N domain LIT38_07590 PF01769 Divalent cation transporter LIT38_07595 PF02254 TrkA-N domain LIT38_07595 PF02080 TrkA-C domain LIT38_07595 PF00999 Sodium/hydrogen exchanger family LIT38_07610 PF10612 Spore coat protein Z LIT38_07615 PF07098 Protein of unknown function (DUF1360) LIT38_07625 PF03862 SpoVAC/SpoVAEB sporulation membrane protein LIT38_07630 PF07451 Stage V sporulation protein AD (SpoVAD) LIT38_07635 PF03862 SpoVAC/SpoVAEB sporulation membrane protein LIT38_07645 PF14069 Stage VI sporulation protein F LIT38_07650 PF00580 UvrD/REP helicase N-terminal domain LIT38_07650 PF13361 UvrD-like helicase C-terminal domain LIT38_07660 PF04239 Protein of unknown function (DUF421) LIT38_07665 PF13673 Acetyltransferase (GNAT) domain LIT38_07675 PF00756 Putative esterase LIT38_07680 PF16868 NMT1-like family LIT38_07720 PF01619 Proline dehydrogenase LIT38_07730 PF03372 Endonuclease/Exonuclease/phosphatase family LIT38_07735 PF02378 Phosphotransferase system, EIIC LIT38_07735 PF00367 phosphotransferase system, EIIB LIT38_07735 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LIT38_07740 PF00171 Aldehyde dehydrogenase family LIT38_07750 PF09339 IclR helix-turn-helix domain LIT38_07750 PF01614 Bacterial transcriptional regulator LIT38_07755 PF00171 Aldehyde dehydrogenase family LIT38_07760 PF01557 Fumarylacetoacetate (FAA) hydrolase family LIT38_07765 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation LIT38_07765 PF01118 Semialdehyde dehydrogenase, NAD binding domain LIT38_07770 PF07836 DmpG-like communication domain LIT38_07770 PF00682 HMGL-like LIT38_07780 PF01361 Tautomerase enzyme LIT38_07785 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase LIT38_07785 PF01871 AMMECR1 LIT38_07790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIT38_07790 PF03466 LysR substrate binding domain LIT38_07795 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LIT38_07795 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LIT38_07795 PF00205 Thiamine pyrophosphate enzyme, central domain LIT38_07800 PF03480 Bacterial extracellular solute-binding protein, family 7 LIT38_07805 PF01614 Bacterial transcriptional regulator LIT38_07805 PF09339 IclR helix-turn-helix domain LIT38_07810 PF01614 Bacterial transcriptional regulator LIT38_07810 PF09339 IclR helix-turn-helix domain LIT38_07815 PF01494 FAD binding domain LIT38_07820 PF03480 Bacterial extracellular solute-binding protein, family 7 LIT38_07830 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LIT38_07835 PF00355 Rieske [2Fe-2S] domain LIT38_07835 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LIT38_07840 PF00866 Ring hydroxylating beta subunit LIT38_07850 PF07670 Nucleoside recognition LIT38_07860 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LIT38_07860 PF13378 Enolase C-terminal domain-like LIT38_07870 PF00269 Small, acid-soluble spore proteins, alpha/beta type LIT38_07875 PF00909 Ammonium Transporter Family LIT38_07885 PF02811 PHP domain LIT38_07885 PF00929 Exonuclease LIT38_07885 PF14579 Helix-hairpin-helix motif LIT38_07885 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LIT38_07885 PF07733 Bacterial DNA polymerase III alpha NTPase domain LIT38_07905 PF16242 Pyridoxamine 5'-phosphate oxidase like LIT38_07920 PF02554 Carbon starvation protein CstA LIT38_07930 PF08245 Mur ligase middle domain LIT38_07930 PF02875 Mur ligase family, glutamate ligase domain LIT38_07930 PF01225 Mur ligase family, catalytic domain LIT38_07935 PF03009 Glycerophosphoryl diester phosphodiesterase family LIT38_07950 PF15975 Flotillin LIT38_07950 PF01145 SPFH domain / Band 7 family LIT38_07955 PF09680 Family of unknown function LIT38_07965 PF12848 ABC transporter LIT38_07965 PF00005 ABC transporter LIT38_07970 PF05922 Peptidase inhibitor I9 LIT38_07970 PF00082 Subtilase family LIT38_07975 PF08281 Sigma-70, region 4 LIT38_07975 PF04542 Sigma-70 region 2 LIT38_07985 PF13416 Bacterial extracellular solute-binding protein LIT38_07990 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_07995 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_08005 PF01026 TatD related DNase LIT38_08010 PF00005 ABC transporter LIT38_08015 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_08020 PF01910 Thiamine-binding protein LIT38_08025 PF09084 NMT1/THI5 like LIT38_08030 PF06803 Protein of unknown function (DUF1232) LIT38_08035 PF02146 Sir2 family LIT38_08040 PF02416 mttA/Hcf106 family LIT38_08045 PF00367 phosphotransferase system, EIIB LIT38_08045 PF02378 Phosphotransferase system, EIIC LIT38_08050 PF16657 Maltogenic Amylase, C-terminal domain LIT38_08050 PF00128 Alpha amylase, catalytic domain LIT38_08055 PF00128 Alpha amylase, catalytic domain LIT38_08055 PF16657 Maltogenic Amylase, C-terminal domain LIT38_08060 PF07662 Na+ dependent nucleoside transporter C-terminus LIT38_08060 PF01773 Na+ dependent nucleoside transporter N-terminus LIT38_08070 PF04307 LexA-binding, inner membrane-associated putative hydrolase LIT38_08075 PF16658 Class II release factor RF3, C-terminal domain LIT38_08075 PF00009 Elongation factor Tu GTP binding domain LIT38_08075 PF03144 Elongation factor Tu domain 2 LIT38_08080 PF03553 Na+/H+ antiporter family LIT38_08085 PF00873 AcrB/AcrD/AcrF family LIT38_08100 PF04542 Sigma-70 region 2 LIT38_08105 PF12791 Anti-sigma factor N-terminus LIT38_08110 PF00269 Small, acid-soluble spore proteins, alpha/beta type LIT38_08115 PF02754 Cysteine-rich domain LIT38_08115 PF13183 4Fe-4S dicluster domain LIT38_08120 PF01565 FAD binding domain LIT38_08120 PF02913 FAD linked oxidases, C-terminal domain LIT38_08125 PF13556 PucR C-terminal helix-turn-helix domain LIT38_08125 PF17853 GGDEF-like domain LIT38_08125 PF05651 Putative sugar diacid recognition LIT38_08130 PF02386 Cation transport protein LIT38_08155 PF02754 Cysteine-rich domain LIT38_08160 PF02589 LUD domain LIT38_08160 PF13183 4Fe-4S dicluster domain LIT38_08160 PF11870 Domain of unknown function (DUF3390) LIT38_08165 PF02589 LUD domain LIT38_08175 PF01757 Acyltransferase family LIT38_08180 PF12729 Four helix bundle sensory module for signal transduction LIT38_08180 PF00672 HAMP domain LIT38_08180 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIT38_08185 PF00989 PAS fold LIT38_08185 PF00512 His Kinase A (phospho-acceptor) domain LIT38_08185 PF13188 PAS domain LIT38_08185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_08185 PF13426 PAS domain LIT38_08190 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LIT38_08190 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain LIT38_08195 PF01022 Bacterial regulatory protein, arsR family LIT38_08200 PF00795 Carbon-nitrogen hydrolase LIT38_08205 PF00155 Aminotransferase class I and II LIT38_08210 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain LIT38_08210 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain LIT38_08220 PF00596 Class II Aldolase and Adducin N-terminal domain LIT38_08225 PF03079 ARD/ARD' family LIT38_08235 PF01012 Electron transfer flavoprotein domain LIT38_08240 PF01012 Electron transfer flavoprotein domain LIT38_08240 PF00766 Electron transfer flavoprotein FAD-binding domain LIT38_08245 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIT38_08260 PF07690 Major Facilitator Superfamily LIT38_08265 PF01636 Phosphotransferase enzyme family LIT38_08270 PF02743 Cache domain LIT38_08270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_08270 PF00512 His Kinase A (phospho-acceptor) domain LIT38_08275 PF00149 Calcineurin-like phosphoesterase LIT38_08275 PF02872 5'-nucleotidase, C-terminal domain LIT38_08280 PF01047 MarR family LIT38_08295 PF10431 C-terminal, D2-small domain, of ClpB protein LIT38_08295 PF07724 AAA domain (Cdc48 subfamily) LIT38_08295 PF00004 ATPase family associated with various cellular activities (AAA) LIT38_08295 PF17871 AAA lid domain LIT38_08320 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) LIT38_08335 PF00005 ABC transporter LIT38_08340 PF03649 Uncharacterised protein family (UPF0014) LIT38_08355 PF00381 PTS HPr component phosphorylation site LIT38_08360 PF02896 PEP-utilising enzyme, TIM barrel domain LIT38_08360 PF00391 PEP-utilising enzyme, mobile domain LIT38_08360 PF05524 PEP-utilising enzyme, N-terminal LIT38_08370 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LIT38_08370 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LIT38_08380 PF00155 Aminotransferase class I and II LIT38_08390 PF06271 RDD family LIT38_08400 PF11700 Vacuole effluxer Atg22 like LIT38_08405 PF01584 CheW-like domain LIT38_08405 PF00072 Response regulator receiver domain LIT38_08410 PF14177 YkyB-like protein LIT38_08425 PF01476 LysM domain LIT38_08425 PF03734 L,D-transpeptidase catalytic domain LIT38_08430 PF00149 Calcineurin-like phosphoesterase LIT38_08430 PF10518 TAT (twin-arginine translocation) pathway signal sequence LIT38_08445 PF10388 EAL-domain associated signalling protein domain LIT38_08445 PF00563 EAL domain LIT38_08465 PF00753 Metallo-beta-lactamase superfamily LIT38_08470 PF08796 Protein of unknown function (DUF1797) LIT38_08490 PF07690 Major Facilitator Superfamily LIT38_08495 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIT38_08495 PF03466 LysR substrate binding domain LIT38_08500 PF00132 Bacterial transferase hexapeptide (six repeats) LIT38_08500 PF14602 Hexapeptide repeat of succinyl-transferase LIT38_08500 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal LIT38_08505 PF07687 Peptidase dimerisation domain LIT38_08505 PF01546 Peptidase family M20/M25/M40 LIT38_08510 PF00924 Mechanosensitive ion channel LIT38_08515 PF00664 ABC transporter transmembrane region LIT38_08515 PF00005 ABC transporter LIT38_08520 PF00664 ABC transporter transmembrane region LIT38_08520 PF00005 ABC transporter LIT38_08525 PF02080 TrkA-C domain LIT38_08525 PF02254 TrkA-N domain LIT38_08530 PF00753 Metallo-beta-lactamase superfamily LIT38_08530 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain LIT38_08530 PF17770 Ribonuclease J C-terminal domain LIT38_08535 PF07288 Protein of unknown function (DUF1447) LIT38_08545 PF01327 Polypeptide deformylase LIT38_08555 PF10368 Putative cell-wall binding lipoprotein LIT38_08560 PF00676 Dehydrogenase E1 component LIT38_08565 PF02779 Transketolase, pyrimidine binding domain LIT38_08565 PF02780 Transketolase, C-terminal domain LIT38_08570 PF02817 e3 binding domain LIT38_08570 PF00364 Biotin-requiring enzyme LIT38_08570 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LIT38_08575 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIT38_08575 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LIT38_08590 PF02028 BCCT, betaine/carnitine/choline family transporter LIT38_08595 PF01522 Polysaccharide deacetylase LIT38_08615 PF01276 Orn/Lys/Arg decarboxylase, major domain LIT38_08615 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain LIT38_08620 PF03060 Nitronate monooxygenase LIT38_08625 PF05256 Uncharacterised protein family (UPF0223) LIT38_08630 PF06335 Protein of unknown function (DUF1054) LIT38_08640 PF00459 Inositol monophosphatase family LIT38_08645 PF00583 Acetyltransferase (GNAT) family LIT38_08655 PF14492 Elongation Factor G, domain II LIT38_08655 PF03144 Elongation factor Tu domain 2 LIT38_08655 PF00679 Elongation factor G C-terminus LIT38_08655 PF00009 Elongation factor Tu GTP binding domain LIT38_08660 PF14036 YlaH-like protein LIT38_08670 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) LIT38_08680 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) LIT38_08685 PF02562 PhoH-like protein LIT38_08685 PF13638 PIN domain LIT38_08695 PF07408 Protein of unknown function (DUF1507) LIT38_08700 PF01098 Cell cycle protein LIT38_08705 PF02785 Biotin carboxylase C-terminal domain LIT38_08705 PF00364 Biotin-requiring enzyme LIT38_08705 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LIT38_08705 PF00682 HMGL-like LIT38_08705 PF00289 Biotin carboxylase, N-terminal domain LIT38_08705 PF02436 Conserved carboxylase domain LIT38_08710 PF02628 Cytochrome oxidase assembly protein LIT38_08715 PF01040 UbiA prenyltransferase family LIT38_08720 PF00034 Cytochrome c LIT38_08720 PF02790 Cytochrome C oxidase subunit II, transmembrane domain LIT38_08720 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LIT38_08725 PF00115 Cytochrome C and Quinol oxidase polypeptide I LIT38_08730 PF00510 Cytochrome c oxidase subunit III LIT38_08735 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LIT38_08740 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) LIT38_08755 PF01594 AI-2E family transporter LIT38_08765 PF08868 YugN-like family LIT38_08775 PF00571 CBS domain LIT38_08780 PF00188 Cysteine-rich secretory protein family LIT38_08780 PF14504 CAP-associated N-terminal LIT38_08795 PF14071 Putative coat protein LIT38_08800 PF14003 YlbE-like protein LIT38_08810 PF06133 Control of competence regulator ComK, YlbF/YmcA LIT38_08815 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) LIT38_08840 PF01467 Cytidylyltransferase-like LIT38_08845 PF07670 Nucleoside recognition LIT38_08850 PF01734 Patatin-like phospholipase LIT38_08855 PF05362 Lon protease (S16) C-terminal proteolytic domain LIT38_08855 PF13180 PDZ domain LIT38_08860 PF05636 HIGH Nucleotidyl Transferase LIT38_08865 PF02620 Large ribosomal RNA subunit accumulation protein YceD LIT38_08870 PF01783 Ribosomal L32p protein family LIT38_08875 PF00378 Enoyl-CoA hydratase/isomerase LIT38_08885 PF13508 Acetyltransferase (GNAT) domain LIT38_08890 PF00289 Biotin carboxylase, N-terminal domain LIT38_08890 PF02785 Biotin carboxylase C-terminal domain LIT38_08890 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LIT38_08895 PF00364 Biotin-requiring enzyme LIT38_08900 PF01039 Carboxyl transferase domain LIT38_08905 PF08546 Ketopantoate reductase PanE/ApbA C terminal LIT38_08905 PF02558 Ketopantoate reductase PanE/ApbA LIT38_08915 PF10079 Bacillithiol biosynthesis BshC LIT38_08920 PF02381 MraZ protein, putative antitoxin-like LIT38_08925 PF01795 MraW methylase family LIT38_08935 PF03793 PASTA domain LIT38_08935 PF03717 Penicillin-binding Protein dimerisation domain LIT38_08935 PF00905 Penicillin binding protein transpeptidase domain LIT38_08940 PF00905 Penicillin binding protein transpeptidase domain LIT38_08940 PF03793 PASTA domain LIT38_08940 PF03717 Penicillin-binding Protein dimerisation domain LIT38_08945 PF01225 Mur ligase family, catalytic domain LIT38_08945 PF02875 Mur ligase family, glutamate ligase domain LIT38_08945 PF08245 Mur ligase middle domain LIT38_08955 PF00953 Glycosyl transferase family 4 LIT38_08960 PF08245 Mur ligase middle domain LIT38_08960 PF02875 Mur ligase family, glutamate ligase domain LIT38_08965 PF01098 Cell cycle protein LIT38_08970 PF03033 Glycosyltransferase family 28 N-terminal domain LIT38_08970 PF04101 Glycosyltransferase family 28 C-terminal domain LIT38_08975 PF01565 FAD binding domain LIT38_08975 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain LIT38_08980 PF08478 POTRA domain, FtsQ-type LIT38_08985 PF05949 Bacterial protein of unknown function (DUF881) LIT38_08990 PF05949 Bacterial protein of unknown function (DUF881) LIT38_08995 PF06947 Protein of unknown function (DUF1290) LIT38_09000 PF02491 SHS2 domain inserted in FTSA LIT38_09005 PF12327 FtsZ family, C-terminal domain LIT38_09005 PF00091 Tubulin/FtsZ family, GTPase domain LIT38_09010 PF00175 Oxidoreductase NAD-binding domain LIT38_09010 PF00042 Globin LIT38_09010 PF00970 Oxidoreductase FAD-binding domain LIT38_09015 PF03419 Sporulation factor SpoIIGA LIT38_09020 PF04542 Sigma-70 region 2 LIT38_09020 PF04545 Sigma-70, region 4 LIT38_09025 PF04542 Sigma-70 region 2 LIT38_09025 PF04539 Sigma-70 region 3 LIT38_09025 PF04545 Sigma-70, region 4 LIT38_09030 PF05239 PRC-barrel domain LIT38_09035 PF02578 Multi-copper polyphenol oxidoreductase laccase LIT38_09040 PF01168 Alanine racemase, N-terminal domain LIT38_09045 PF04472 Cell division protein SepF LIT38_09050 PF02325 YGGT family LIT38_09055 PF01479 S4 domain LIT38_09055 PF17774 Putative RNA-binding domain in YlmH LIT38_09060 PF05103 DivIVA protein LIT38_09065 PF06827 Zinc finger found in FPG and IleRS LIT38_09065 PF08264 Anticodon-binding domain of tRNA LIT38_09065 PF00133 tRNA synthetases class I (I, L, M and V) LIT38_09075 PF01252 Signal peptidase (SPase) II LIT38_09080 PF00849 RNA pseudouridylate synthase LIT38_09080 PF01479 S4 domain LIT38_09085 PF00156 Phosphoribosyl transferase domain LIT38_09090 PF00860 Permease family LIT38_09095 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain LIT38_09095 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain LIT38_09100 PF01979 Amidohydrolase family LIT38_09105 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain LIT38_09105 PF00117 Glutamine amidotransferase class-I LIT38_09110 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain LIT38_09110 PF02142 MGS-like domain LIT38_09110 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LIT38_09115 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B LIT38_09115 PF00970 Oxidoreductase FAD-binding domain LIT38_09120 PF01180 Dihydroorotate dehydrogenase LIT38_09125 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LIT38_09130 PF00156 Phosphoribosyl transferase domain LIT38_09135 PF05670 NFACT protein RNA binding domain LIT38_09145 PF00690 Cation transporter/ATPase, N-terminus LIT38_09145 PF00689 Cation transporting ATPase, C-terminus LIT38_09150 PF08340 Domain of unknown function (DUF1732) LIT38_09150 PF03755 YicC-like family, N-terminal region LIT38_09155 PF04025 Domain of unknown function (DUF370) LIT38_09160 PF00625 Guanylate kinase LIT38_09165 PF01192 RNA polymerase Rpb6 LIT38_09170 PF02441 Flavoprotein LIT38_09170 PF04127 DNA / pantothenate metabolism flavoprotein LIT38_09175 PF04851 Type III restriction enzyme, res subunit LIT38_09175 PF18319 PriA DNA helicase Cys-rich region (CRR) domain LIT38_09175 PF18074 Primosomal protein N C-terminal domain LIT38_09175 PF17764 3′ DNA-binding domain (3′BD) LIT38_09175 PF00271 Helicase conserved C-terminal domain LIT38_09180 PF01327 Polypeptide deformylase LIT38_09185 PF02911 Formyl transferase, C-terminal domain LIT38_09185 PF00551 Formyl transferase LIT38_09190 PF01189 16S rRNA methyltransferase RsmB/F LIT38_09190 PF01029 NusB family LIT38_09195 PF04055 Radical SAM superfamily LIT38_09205 PF03793 PASTA domain LIT38_09205 PF00069 Protein kinase domain LIT38_09210 PF03193 RsgA GTPase LIT38_09210 PF16745 RsgA N-terminal domain LIT38_09215 PF00834 Ribulose-phosphate 3 epimerase family LIT38_09220 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain LIT38_09220 PF04263 Thiamin pyrophosphokinase, catalytic domain LIT38_09225 PF08183 Stage V sporulation protein family LIT38_09230 PF00830 Ribosomal L28 family LIT38_09235 PF03780 Asp23 family, cell envelope-related function LIT38_09240 PF02734 DAK2 domain LIT38_09240 PF13684 Dihydroxyacetone kinase family LIT38_09245 PF00270 DEAD/DEAH box helicase LIT38_09245 PF00271 Helicase conserved C-terminal domain LIT38_09245 PF17191 RecG wedge domain LIT38_09250 PF08279 HTH domain LIT38_09250 PF01575 MaoC like domain LIT38_09255 PF02504 Fatty acid synthesis protein LIT38_09260 PF00698 Acyl transferase domain LIT38_09270 PF00550 Phosphopantetheine attachment site LIT38_09275 PF00035 Double-stranded RNA binding motif LIT38_09275 PF14622 Ribonuclease-III-like LIT38_09280 PF06470 SMC proteins Flexible Hinge Domain LIT38_09280 PF02463 RecF/RecN/SMC N terminal domain LIT38_09285 PF02881 SRP54-type protein, helical bundle domain LIT38_09285 PF00448 SRP54-type protein, GTPase domain LIT38_09295 PF00005 ABC transporter LIT38_09310 PF17863 AAA lid domain LIT38_09310 PF07726 ATPase family associated with various cellular activities (AAA) LIT38_09315 PF01882 Protein of unknown function DUF58 LIT38_09330 PF04297 Putative helix-turn-helix protein, YlxM / p13 like LIT38_09335 PF02881 SRP54-type protein, helical bundle domain LIT38_09335 PF02978 Signal peptide binding domain LIT38_09335 PF00448 SRP54-type protein, GTPase domain LIT38_09340 PF00886 Ribosomal protein S16 LIT38_09350 PF11068 YlqD protein LIT38_09355 PF05239 PRC-barrel domain LIT38_09355 PF01782 RimM N-terminal domain LIT38_09360 PF01746 tRNA (Guanine-1)-methyltransferase LIT38_09365 PF01245 Ribosomal protein L19 LIT38_09370 PF10502 Signal peptidase, peptidase S26 LIT38_09375 PF01926 50S ribosome-binding GTPase LIT38_09380 PF01351 Ribonuclease HII LIT38_09390 PF01312 FlhB HrpN YscU SpaS Family LIT38_09395 PF08442 ATP-grasp domain LIT38_09395 PF00549 CoA-ligase LIT38_09400 PF02629 CoA binding domain LIT38_09400 PF00549 CoA-ligase LIT38_09405 PF02481 DNA recombination-mediator protein A LIT38_09410 PF01131 DNA topoisomerase LIT38_09410 PF01751 Toprim domain LIT38_09410 PF01396 Topoisomerase DNA binding C4 zinc finger LIT38_09415 PF01134 Glucose inhibited division protein A LIT38_09420 PF02899 Phage integrase, N-terminal SAM-like domain LIT38_09420 PF00589 Phage integrase family LIT38_09425 PF00227 Proteasome subunit LIT38_09430 PF00004 ATPase family associated with various cellular activities (AAA) LIT38_09430 PF07724 AAA domain (Cdc48 subfamily) LIT38_09430 PF10431 C-terminal, D2-small domain, of ClpB protein LIT38_09435 PF06018 CodY GAF-like domain LIT38_09435 PF08222 CodY helix-turn-helix domain LIT38_09440 PF00460 Flagella basal body rod protein LIT38_09445 PF00460 Flagella basal body rod protein LIT38_09445 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LIT38_09450 PF02049 Flagellar hook-basal body complex protein FliE LIT38_09455 PF08345 Flagellar M-ring protein C-terminal LIT38_09455 PF01514 Secretory protein of YscJ/FliF family LIT38_09460 PF01706 FliG C-terminal domain LIT38_09460 PF14841 FliG middle domain LIT38_09460 PF14842 FliG N-terminal domain LIT38_09465 PF02108 Flagellar assembly protein FliH LIT38_09470 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LIT38_09470 PF02874 ATP synthase alpha/beta family, beta-barrel domain LIT38_09470 PF18269 T3SS EscN ATPase C-terminal domain LIT38_09475 PF02050 Flagellar FliJ protein LIT38_09490 PF03963 Flagellar hook capping protein - N-terminal region LIT38_09500 PF00460 Flagella basal body rod protein LIT38_09500 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LIT38_09505 PF06289 Flagellar and Swarming motility proteins LIT38_09510 PF03748 Flagellar basal body-associated protein FliL LIT38_09515 PF02154 Flagellar motor switch protein FliM LIT38_09515 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LIT38_09520 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term LIT38_09520 PF04509 CheC-like family LIT38_09525 PF00072 Response regulator receiver domain LIT38_09530 PF04347 Flagellar biosynthesis protein, FliO LIT38_09535 PF00813 FliP family LIT38_09540 PF01313 Bacterial export proteins, family 3 LIT38_09545 PF01311 Bacterial export proteins, family 1 LIT38_09550 PF01312 FlhB HrpN YscU SpaS Family LIT38_09555 PF00771 FHIPEP family LIT38_09560 PF00448 SRP54-type protein, GTPase domain LIT38_09565 PF10609 NUBPL iron-transfer P-loop NTPase LIT38_09570 PF01339 CheB methylesterase LIT38_09570 PF00072 Response regulator receiver domain LIT38_09575 PF07194 P2 response regulator binding domain LIT38_09575 PF01627 Hpt domain LIT38_09575 PF02895 Signal transducing histidine kinase, homodimeric domain LIT38_09575 PF01584 CheW-like domain LIT38_09575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_09580 PF01584 CheW-like domain LIT38_09585 PF04509 CheC-like family LIT38_09590 PF03975 CheD chemotactic sensory transduction LIT38_09595 PF04542 Sigma-70 region 2 LIT38_09595 PF04539 Sigma-70 region 3 LIT38_09595 PF04545 Sigma-70, region 4 LIT38_09615 PF00318 Ribosomal protein S2 LIT38_09620 PF00889 Elongation factor TS LIT38_09625 PF00696 Amino acid kinase family LIT38_09630 PF01765 Ribosome recycling factor LIT38_09635 PF01255 Putative undecaprenyl diphosphate synthase LIT38_09645 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain LIT38_09645 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase LIT38_09645 PF13288 DXP reductoisomerase C-terminal domain LIT38_09650 PF13180 PDZ domain LIT38_09650 PF02163 Peptidase family M50 LIT38_09655 PF04073 Aminoacyl-tRNA editing domain LIT38_09655 PF03129 Anticodon binding domain LIT38_09655 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LIT38_09660 PF00929 Exonuclease LIT38_09660 PF14480 DNA polymerase III polC-type N-terminus I LIT38_09660 PF11490 DNA polymerase III polC-type N-terminus II LIT38_09660 PF07733 Bacterial DNA polymerase III alpha NTPase domain LIT38_09660 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LIT38_09660 PF14579 Helix-hairpin-helix motif LIT38_09660 PF02811 PHP domain LIT38_09665 PF17384 RimP C-terminal SH3 domain LIT38_09665 PF02576 RimP N-terminal domain LIT38_09670 PF13184 NusA-like KH domain LIT38_09670 PF00575 S1 RNA binding domain LIT38_09670 PF08529 NusA N-terminal domain LIT38_09675 PF04296 Protein of unknown function (DUF448) LIT38_09680 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family LIT38_09685 PF04760 Translation initiation factor IF-2, N-terminal region LIT38_09685 PF00009 Elongation factor Tu GTP binding domain LIT38_09685 PF11987 Translation-initiation factor 2 LIT38_09690 PF04456 Protein of unknown function (DUF503) LIT38_09695 PF02033 Ribosome-binding factor A LIT38_09700 PF01509 TruB family pseudouridylate synthase (N terminal domain) LIT38_09700 PF16198 tRNA pseudouridylate synthase B C-terminal domain LIT38_09705 PF01687 Riboflavin kinase LIT38_09705 PF06574 FAD synthetase LIT38_09710 PF00312 Ribosomal protein S15 LIT38_09715 PF00575 S1 RNA binding domain LIT38_09715 PF03725 3' exoribonuclease family, domain 2 LIT38_09715 PF00013 KH domain LIT38_09715 PF01138 3' exoribonuclease family, domain 1 LIT38_09715 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain LIT38_09720 PF01522 Polysaccharide deacetylase LIT38_09725 PF05193 Peptidase M16 inactive domain LIT38_09725 PF00675 Insulinase (Peptidase family M16) LIT38_09730 PF05239 PRC-barrel domain LIT38_09740 PF16924 Dipicolinate synthase subunit A N-terminal domain LIT38_09740 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LIT38_09745 PF02441 Flavoprotein LIT38_09750 PF01118 Semialdehyde dehydrogenase, NAD binding domain LIT38_09750 PF02774 Semialdehyde dehydrogenase, dimerisation domain LIT38_09755 PF00696 Amino acid kinase family LIT38_09755 PF13840 ACT domain LIT38_09760 PF00701 Dihydrodipicolinate synthetase family LIT38_09765 PF00753 Metallo-beta-lactamase superfamily LIT38_09765 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain LIT38_09765 PF17770 Ribonuclease J C-terminal domain LIT38_09770 PF00574 Clp protease LIT38_09775 PF14035 YlzJ-like protein LIT38_09780 PF01580 FtsK/SpoIIIE family LIT38_09780 PF09397 Ftsk gamma domain LIT38_09780 PF17854 FtsK alpha domain LIT38_09785 PF00392 Bacterial regulatory proteins, gntR family LIT38_09785 PF07702 UTRA domain LIT38_09790 PF02608 ABC transporter substrate-binding protein PnrA-like LIT38_09795 PF00005 ABC transporter LIT38_09800 PF02653 Branched-chain amino acid transport system / permease component LIT38_09805 PF02653 Branched-chain amino acid transport system / permease component LIT38_09810 PF05193 Peptidase M16 inactive domain LIT38_09815 PF00675 Insulinase (Peptidase family M16) LIT38_09815 PF05193 Peptidase M16 inactive domain LIT38_09825 PF11588 Protein of unknown function (DUF3243) LIT38_09830 PF11868 Protein of unknown function (DUF3388) LIT38_09835 PF13464 Domain of unknown function (DUF4115) LIT38_09840 PF01066 CDP-alcohol phosphatidyltransferase LIT38_09845 PF18146 Damage-inducible protein CinA KH domain LIT38_09845 PF02464 Competence-damaged protein LIT38_09845 PF00994 Probable molybdopterin binding domain LIT38_09850 PF00154 recA bacterial DNA recombination protein LIT38_09855 PF12072 Domain of unknown function (DUF3552) LIT38_09855 PF00013 KH domain LIT38_09855 PF01966 HD domain LIT38_09860 PF13277 YmdB-like protein LIT38_09865 PF04232 Stage V sporulation protein S (SpoVS) LIT38_09870 PF01244 Membrane dipeptidase (Peptidase family M19) LIT38_09875 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II LIT38_09875 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase LIT38_09875 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg LIT38_09880 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LIT38_09885 PF04055 Radical SAM superfamily LIT38_09885 PF01938 TRAM domain LIT38_09885 PF00919 Uncharacterized protein family UPF0004 LIT38_09890 PF06133 Control of competence regulator ComK, YlbF/YmcA LIT38_09910 PF10628 Outer spore coat protein E (CotE) LIT38_09920 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LIT38_09925 PF11724 YvbH-like oligomerisation region LIT38_09925 PF08000 Bacterial PH domain LIT38_09930 PF01624 MutS domain I LIT38_09930 PF05188 MutS domain II LIT38_09930 PF05190 MutS family domain IV LIT38_09930 PF05192 MutS domain III LIT38_09930 PF00488 MutS domain V LIT38_09935 PF01119 DNA mismatch repair protein, C-terminal domain LIT38_09935 PF08676 MutL C terminal dimerisation domain LIT38_09940 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LIT38_09945 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_09950 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_09950 PF12911 N-terminal TM domain of oligopeptide transport permease C LIT38_09955 PF00005 ABC transporter LIT38_09955 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LIT38_09960 PF00005 ABC transporter LIT38_09960 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LIT38_09965 PF01546 Peptidase family M20/M25/M40 LIT38_09965 PF07687 Peptidase dimerisation domain LIT38_09970 PF01546 Peptidase family M20/M25/M40 LIT38_09970 PF07687 Peptidase dimerisation domain LIT38_09975 PF00392 Bacterial regulatory proteins, gntR family LIT38_09990 PF17209 Hfq protein LIT38_09995 PF00004 ATPase family associated with various cellular activities (AAA) LIT38_09995 PF17866 AAA lid domain LIT38_10005 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LIT38_10005 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LIT38_10015 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus LIT38_10020 PF02615 Malate/L-lactate dehydrogenase LIT38_10025 PF00392 Bacterial regulatory proteins, gntR family LIT38_10025 PF07729 FCD domain LIT38_10030 PF03601 Conserved hypothetical protein 698 LIT38_10035 PF03480 Bacterial extracellular solute-binding protein, family 7 LIT38_10040 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LIT38_10045 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LIT38_10045 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component LIT38_10050 PF03458 UPF0126 domain LIT38_10055 PF16360 GTP-binding GTPase Middle Region LIT38_10055 PF13167 GTP-binding GTPase N-terminal LIT38_10055 PF01926 50S ribosome-binding GTPase LIT38_10060 PF06838 Methionine gamma-lyase LIT38_10065 PF13411 MerR HTH family regulatory protein LIT38_10070 PF00120 Glutamine synthetase, catalytic domain LIT38_10070 PF03951 Glutamine synthetase, beta-Grasp domain LIT38_10080 PF14074 Protein of unknown function (DUF4257) LIT38_10085 PF01726 LexA DNA binding domain LIT38_10085 PF00717 Peptidase S24-like LIT38_10090 PF01476 LysM domain LIT38_10095 PF00239 Resolvase, N terminal domain LIT38_10100 PF05979 Bacterial protein of unknown function (DUF896) LIT38_10105 PF02780 Transketolase, C-terminal domain LIT38_10105 PF02779 Transketolase, pyrimidine binding domain LIT38_10105 PF00456 Transketolase, thiamine diphosphate binding domain LIT38_10110 PF10747 Sporulation inhibitor of replication protein SirA LIT38_10115 PF03672 Uncharacterised protein family (UPF0154) LIT38_10125 PF00664 ABC transporter transmembrane region LIT38_10125 PF00005 ABC transporter LIT38_10130 PF00664 ABC transporter transmembrane region LIT38_10130 PF00005 ABC transporter LIT38_10135 PF12706 Beta-lactamase superfamily domain LIT38_10140 PF01037 Lrp/AsnC ligand binding domain LIT38_10150 PF02683 Cytochrome C biogenesis protein transmembrane region LIT38_10155 PF00072 Response regulator receiver domain LIT38_10160 PF07301 Protein of unknown function (DUF1453) LIT38_10170 PF11084 Protein of unknown function (DUF2621) LIT38_10185 PF00924 Mechanosensitive ion channel LIT38_10195 PF13416 Bacterial extracellular solute-binding protein LIT38_10200 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_10205 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_10210 PF00753 Metallo-beta-lactamase superfamily LIT38_10215 PF13344 Haloacid dehalogenase-like hydrolase LIT38_10230 PF02308 MgtC family LIT38_10235 PF04309 Glycerol-3-phosphate responsive antiterminator LIT38_10255 PF07729 FCD domain LIT38_10255 PF00392 Bacterial regulatory proteins, gntR family LIT38_10260 PF02913 FAD linked oxidases, C-terminal domain LIT38_10260 PF01565 FAD binding domain LIT38_10265 PF01758 Sodium Bile acid symporter family LIT38_10270 PF07690 Major Facilitator Superfamily LIT38_10280 PF04973 Nicotinamide mononucleotide transporter LIT38_10290 PF00962 Adenosine/AMP deaminase LIT38_10300 PF00474 Sodium:solute symporter family LIT38_10310 PF12833 Helix-turn-helix domain LIT38_10310 PF00072 Response regulator receiver domain LIT38_10325 PF03553 Na+/H+ antiporter family LIT38_10330 PF14698 Argininosuccinate lyase C-terminal LIT38_10330 PF00206 Lyase LIT38_10340 PF07486 Cell Wall Hydrolase LIT38_10355 PF07486 Cell Wall Hydrolase LIT38_10415 PF00155 Aminotransferase class I and II LIT38_10415 PF00392 Bacterial regulatory proteins, gntR family LIT38_10425 PF00155 Aminotransferase class I and II LIT38_10425 PF00392 Bacterial regulatory proteins, gntR family LIT38_10455 PF00478 IMP dehydrogenase / GMP reductase domain LIT38_10460 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LIT38_10465 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_10470 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_10475 PF00005 ABC transporter LIT38_10480 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LIT38_10480 PF00005 ABC transporter LIT38_10485 PF01554 MatE LIT38_10510 PF00158 Sigma-54 interaction domain LIT38_10515 PF00491 Arginase family LIT38_10520 PF07670 Nucleoside recognition LIT38_10530 PF03413 Peptidase propeptide and YPEB domain LIT38_10530 PF01447 Thermolysin metallopeptidase, catalytic domain LIT38_10530 PF02868 Thermolysin metallopeptidase, alpha-helical domain LIT38_10530 PF07504 Fungalysin/Thermolysin Propeptide Motif LIT38_10535 PF00005 ABC transporter LIT38_10540 PF02687 FtsX-like permease family LIT38_10545 PF00672 HAMP domain LIT38_10545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_10545 PF00512 His Kinase A (phospho-acceptor) domain LIT38_10550 PF00486 Transcriptional regulatory protein, C terminal LIT38_10550 PF00072 Response regulator receiver domain LIT38_10560 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LIT38_10560 PF00205 Thiamine pyrophosphate enzyme, central domain LIT38_10560 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LIT38_10565 PF01842 ACT domain LIT38_10565 PF10369 Small subunit of acetolactate synthase LIT38_10585 PF00356 Bacterial regulatory proteins, lacI family LIT38_10595 PF01547 Bacterial extracellular solute-binding protein LIT38_10600 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_10605 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_10610 PF07702 UTRA domain LIT38_10610 PF00392 Bacterial regulatory proteins, gntR family LIT38_10615 PF00480 ROK family LIT38_10620 PF01380 SIS domain LIT38_10625 PF03830 PTS system sorbose subfamily IIB component LIT38_10630 PF03609 PTS system sorbose-specific iic component LIT38_10635 PF03613 PTS system mannose/fructose/sorbose family IID component LIT38_10645 PF01979 Amidohydrolase family LIT38_10650 PF01116 Fructose-bisphosphate aldolase class-II LIT38_10655 PF00294 pfkB family carbohydrate kinase LIT38_10660 PF17137 Domain of unknown function (DUF5110) LIT38_10660 PF16338 Domain of unknown function (DUF4968) LIT38_10660 PF13802 Galactose mutarotase-like LIT38_10660 PF01055 Glycosyl hydrolases family 31 LIT38_10675 PF02082 Transcriptional regulator LIT38_10685 PF00375 Sodium:dicarboxylate symporter family LIT38_10690 PF06800 Sugar transport protein LIT38_10700 PF00199 Catalase LIT38_10700 PF06628 Catalase-related immune-responsive LIT38_10705 PF07722 Peptidase C26 LIT38_10710 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIT38_10710 PF03466 LysR substrate binding domain LIT38_10715 PF00390 Malic enzyme, N-terminal domain LIT38_10715 PF03949 Malic enzyme, NAD binding domain LIT38_10725 PF00571 CBS domain LIT38_10725 PF00005 ABC transporter LIT38_10730 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_10740 PF03313 Serine dehydratase alpha chain LIT38_10745 PF03472 Autoinducer binding domain LIT38_10745 PF00196 Bacterial regulatory proteins, luxR family LIT38_10755 PF07859 alpha/beta hydrolase fold LIT38_10765 PF02225 PA domain LIT38_10765 PF13860 FlgD Ig-like domain LIT38_10765 PF05922 Peptidase inhibitor I9 LIT38_10765 PF00082 Subtilase family LIT38_10775 PF00892 EamA-like transporter family LIT38_10790 PF06866 Protein of unknown function (DUF1256) LIT38_10795 PF00392 Bacterial regulatory proteins, gntR family LIT38_10795 PF07729 FCD domain LIT38_10800 PF01958 Domain of unknown function DUF108 LIT38_10800 PF03447 Homoserine dehydrogenase, NAD binding domain LIT38_10825 PF00175 Oxidoreductase NAD-binding domain LIT38_10825 PF00111 2Fe-2S iron-sulfur cluster binding domain LIT38_10825 PF00970 Oxidoreductase FAD-binding domain LIT38_10840 PF00171 Aldehyde dehydrogenase family LIT38_10845 PF03928 Haem-degrading LIT38_10850 PF02417 Chromate transporter LIT38_10855 PF02417 Chromate transporter LIT38_10860 PF07729 FCD domain LIT38_10860 PF00392 Bacterial regulatory proteins, gntR family LIT38_10875 PF06580 Histidine kinase LIT38_10875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_10875 PF00672 HAMP domain LIT38_10875 PF02743 Cache domain LIT38_10880 PF00072 Response regulator receiver domain LIT38_10880 PF12833 Helix-turn-helix domain LIT38_10890 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_10895 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_10900 PF04854 Protein of unknown function, DUF624 LIT38_10905 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain LIT38_10905 PF04616 Glycosyl hydrolases family 43 LIT38_10915 PF01261 Xylose isomerase-like TIM barrel LIT38_10920 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase LIT38_10920 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LIT38_10930 PF00884 Sulfatase LIT38_10935 PF07690 Major Facilitator Superfamily LIT38_10940 PF04324 BFD-like [2Fe-2S] binding domain LIT38_10940 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LIT38_10940 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LIT38_10940 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIT38_10940 PF18267 Rubredoxin NAD+ reductase C-terminal domain LIT38_10945 PF00384 Molybdopterin oxidoreductase LIT38_10945 PF01568 Molydopterin dinucleotide binding domain LIT38_10945 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LIT38_10950 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LIT38_10950 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIT38_10950 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LIT38_10950 PF04324 BFD-like [2Fe-2S] binding domain LIT38_10950 PF18267 Rubredoxin NAD+ reductase C-terminal domain LIT38_10955 PF00355 Rieske [2Fe-2S] domain LIT38_10960 PF02602 Uroporphyrinogen-III synthase HemD LIT38_10965 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LIT38_10970 PF00356 Bacterial regulatory proteins, lacI family LIT38_10975 PF01547 Bacterial extracellular solute-binding protein LIT38_10980 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_10985 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_10990 PF00128 Alpha amylase, catalytic domain LIT38_10995 PF00128 Alpha amylase, catalytic domain LIT38_11005 PF02898 Nitric oxide synthase, oxygenase domain LIT38_11015 PF01645 Conserved region in glutamate synthase LIT38_11020 PF03323 Bacillus/Clostridium GerA spore germination protein LIT38_11025 PF00440 Bacterial regulatory proteins, tetR family LIT38_11025 PF16925 Tetracyclin repressor-like, C-terminal domain LIT38_11030 PF07690 Major Facilitator Superfamily LIT38_11040 PF02954 Bacterial regulatory protein, Fis family LIT38_11040 PF13426 PAS domain LIT38_11040 PF00158 Sigma-54 interaction domain LIT38_11045 PF00501 AMP-binding enzyme LIT38_11045 PF13193 AMP-binding enzyme C-terminal domain LIT38_11050 PF00378 Enoyl-CoA hydratase/isomerase LIT38_11055 PF00474 Sodium:solute symporter family LIT38_11070 PF04294 VanW like protein LIT38_11075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIT38_11075 PF00672 HAMP domain LIT38_11075 PF12729 Four helix bundle sensory module for signal transduction LIT38_11085 PF03773 Predicted permease LIT38_11090 PF07683 Cobalamin synthesis protein cobW C-terminal domain LIT38_11090 PF02492 CobW/HypB/UreG, nucleotide-binding domain LIT38_11095 PF00471 Ribosomal protein L33 LIT38_11120 PF00313 'Cold-shock' DNA-binding domain LIT38_11125 PF04239 Protein of unknown function (DUF421) LIT38_11135 PF00149 Calcineurin-like phosphoesterase LIT38_11135 PF12320 Type 5 capsule protein repressor C-terminal domain LIT38_11140 PF13476 AAA domain LIT38_11145 PF00764 Arginosuccinate synthase LIT38_11155 PF09529 Integral membrane protein (intg_mem_TP0381) LIT38_11160 PF03630 Fumble LIT38_11165 PF09107 Elongation factor SelB, winged helix LIT38_11165 PF09106 Elongation factor SelB, winged helix LIT38_11165 PF09105 Elongation factor SelB, winged helix LIT38_11165 PF03144 Elongation factor Tu domain 2 LIT38_11165 PF00009 Elongation factor Tu GTP binding domain LIT38_11170 PF00877 NlpC/P60 family LIT38_11170 PF01476 LysM domain LIT38_11180 PF13539 D-alanyl-D-alanine carboxypeptidase LIT38_11185 PF05343 M42 glutamyl aminopeptidase LIT38_11190 PF01594 AI-2E family transporter LIT38_11195 PF12795 Mechanosensitive ion channel porin domain LIT38_11195 PF00924 Mechanosensitive ion channel LIT38_11195 PF12794 Mechanosensitive ion channel inner membrane domain 1 LIT38_11210 PF13307 Helicase C-terminal domain LIT38_11210 PF04851 Type III restriction enzyme, res subunit LIT38_11210 PF00929 Exonuclease LIT38_11220 PF00884 Sulfatase LIT38_11225 PF03860 Domain of Unknown Function (DUF326) LIT38_11230 PF07563 Protein of unknown function (DUF1541) LIT38_11240 PF00486 Transcriptional regulatory protein, C terminal LIT38_11240 PF00072 Response regulator receiver domain LIT38_11245 PF16736 Single Cache-like LIT38_11245 PF00989 PAS fold LIT38_11245 PF00512 His Kinase A (phospho-acceptor) domain LIT38_11245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_11260 PF01842 ACT domain LIT38_11260 PF03315 Serine dehydratase beta chain LIT38_11265 PF03313 Serine dehydratase alpha chain LIT38_11270 PF05901 Excalibur calcium-binding domain LIT38_11270 PF00565 Staphylococcal nuclease homologue LIT38_11280 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LIT38_11280 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LIT38_11285 PF01709 Transcriptional regulator LIT38_11295 PF04203 Sortase domain LIT38_11310 PF00501 AMP-binding enzyme LIT38_11310 PF14535 AMP-binding enzyme C-terminal domain LIT38_11315 PF05138 Phenylacetic acid catabolic protein LIT38_11340 PF00378 Enoyl-CoA hydratase/isomerase LIT38_11345 PF00378 Enoyl-CoA hydratase/isomerase LIT38_11350 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LIT38_11350 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LIT38_11355 PF02803 Thiolase, C-terminal domain LIT38_11355 PF00108 Thiolase, N-terminal domain LIT38_11360 PF07848 PaaX-like protein LIT38_11360 PF08223 PaaX-like protein C-terminal domain LIT38_11380 PF03060 Nitronate monooxygenase LIT38_11390 PF02653 Branched-chain amino acid transport system / permease component LIT38_11395 PF09383 NIL domain LIT38_11395 PF00005 ABC transporter LIT38_11405 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LIT38_11405 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LIT38_11410 PF00676 Dehydrogenase E1 component LIT38_11415 PF02779 Transketolase, pyrimidine binding domain LIT38_11415 PF02780 Transketolase, C-terminal domain LIT38_11420 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LIT38_11420 PF00364 Biotin-requiring enzyme LIT38_11420 PF02817 e3 binding domain LIT38_11425 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIT38_11425 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LIT38_11430 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LIT38_11435 PF00155 Aminotransferase class I and II LIT38_11440 PF01613 Flavin reductase like domain LIT38_11445 PF01557 Fumarylacetoacetate (FAA) hydrolase family LIT38_11455 PF02645 Uncharacterised protein, DegV family COG1307 LIT38_11460 PF00005 ABC transporter LIT38_11460 PF12848 ABC transporter LIT38_11470 PF06628 Catalase-related immune-responsive LIT38_11470 PF00199 Catalase LIT38_11480 PF00155 Aminotransferase class I and II LIT38_11485 PF01370 NAD dependent epimerase/dehydratase family LIT38_11490 PF00797 N-acetyltransferase LIT38_11505 PF12390 Selenocysteine synthase N terminal LIT38_11505 PF03841 L-seryl-tRNA selenium transferase LIT38_11510 PF08179 Small acid-soluble spore protein P family LIT38_11525 PF00694 Aconitase C-terminal domain LIT38_11525 PF00330 Aconitase family (aconitate hydratase) LIT38_11535 PF00578 AhpC/TSA family LIT38_11540 PF13040 Fur-regulated basic protein B LIT38_11545 PF08177 Small acid-soluble spore protein N family LIT38_11555 PF17866 AAA lid domain LIT38_11555 PF00004 ATPase family associated with various cellular activities (AAA) LIT38_11560 PF03061 Thioesterase superfamily LIT38_11570 PF01521 Iron-sulphur cluster biosynthesis LIT38_11580 PF09587 Bacterial capsule synthesis protein PGA_cap LIT38_11585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_11585 PF00512 His Kinase A (phospho-acceptor) domain LIT38_11585 PF00989 PAS fold LIT38_11585 PF13188 PAS domain LIT38_11585 PF13426 PAS domain LIT38_11590 PF02660 Glycerol-3-phosphate acyltransferase LIT38_11605 PF00704 Glycosyl hydrolases family 18 LIT38_11610 PF13382 Adenine deaminase C-terminal domain LIT38_11610 PF01979 Amidohydrolase family LIT38_11615 PF00860 Permease family LIT38_11625 PF02625 XdhC and CoxI family LIT38_11625 PF13478 XdhC Rossmann domain LIT38_11630 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain LIT38_11630 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase LIT38_11635 PF03450 CO dehydrogenase flavoprotein C-terminal domain LIT38_11635 PF00941 FAD binding domain in molybdopterin dehydrogenase LIT38_11645 PF00111 2Fe-2S iron-sulfur cluster binding domain LIT38_11645 PF01799 [2Fe-2S] binding domain LIT38_11655 PF00860 Permease family LIT38_11660 PF01979 Amidohydrolase family LIT38_11665 PF00857 Isochorismatase family LIT38_11670 PF02441 Flavoprotein LIT38_11675 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase LIT38_11680 PF00936 BMC domain LIT38_11695 PF00936 BMC domain LIT38_11705 PF03319 Ethanolamine utilisation protein EutN/carboxysome LIT38_11710 PF13382 Adenine deaminase C-terminal domain LIT38_11710 PF01979 Amidohydrolase family LIT38_11715 PF04199 Putative cyclase LIT38_11720 PF09347 Domain of unknown function (DUF1989) LIT38_11725 PF07687 Peptidase dimerisation domain LIT38_11725 PF01546 Peptidase family M20/M25/M40 LIT38_11730 PF01979 Amidohydrolase family LIT38_11740 PF13380 CoA binding domain LIT38_11745 PF00204 DNA gyrase B LIT38_11745 PF00986 DNA gyrase B subunit, carboxyl terminus LIT38_11745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_11745 PF01751 Toprim domain LIT38_11750 PF03989 DNA gyrase C-terminal domain, beta-propeller LIT38_11750 PF00521 DNA gyrase/topoisomerase IV, subunit A LIT38_11755 PF01235 Sodium:alanine symporter family LIT38_11775 PF08241 Methyltransferase domain LIT38_11780 PF00072 Response regulator receiver domain LIT38_11780 PF00486 Transcriptional regulatory protein, C terminal LIT38_11800 PF01554 MatE LIT38_11830 PF09335 SNARE associated Golgi protein LIT38_11840 PF00149 Calcineurin-like phosphoesterase LIT38_11865 PF04239 Protein of unknown function (DUF421) LIT38_11870 PF00324 Amino acid permease LIT38_11880 PF10710 Protein of unknown function (DUF2512) LIT38_11885 PF00183 Hsp90 protein LIT38_11900 PF00005 ABC transporter LIT38_11905 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_11925 PF08439 Oligopeptidase F LIT38_11925 PF01432 Peptidase family M3 LIT38_11945 PF01734 Patatin-like phospholipase LIT38_11955 PF01063 Amino-transferase class IV LIT38_11965 PF00072 Response regulator receiver domain LIT38_11965 PF00196 Bacterial regulatory proteins, luxR family LIT38_11970 PF07730 Histidine kinase LIT38_11975 PF00487 Fatty acid desaturase LIT38_11985 PF07875 Coat F domain LIT38_11995 PF00271 Helicase conserved C-terminal domain LIT38_11995 PF00270 DEAD/DEAH box helicase LIT38_12005 PF00374 Nickel-dependent hydrogenase LIT38_12010 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal LIT38_12010 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LIT38_12020 PF02769 AIR synthase related protein, C-terminal domain LIT38_12020 PF00586 AIR synthase related protein, N-terminal domain LIT38_12025 PF01924 Hydrogenase formation hypA family LIT38_12030 PF01455 HupF/HypC family LIT38_12035 PF00708 Acylphosphatase LIT38_12035 PF17788 HypF Kae1-like domain LIT38_12035 PF01300 Telomere recombination LIT38_12035 PF07503 HypF finger LIT38_12040 PF02492 CobW/HypB/UreG, nucleotide-binding domain LIT38_12045 PF01155 Hydrogenase/urease nickel incorporation, metallochaperone, hypA LIT38_12050 PF10710 Protein of unknown function (DUF2512) LIT38_12065 PF13823 Alcohol dehydrogenase GroES-associated LIT38_12065 PF00107 Zinc-binding dehydrogenase LIT38_12065 PF08240 Alcohol dehydrogenase GroES-like domain LIT38_12070 PF00271 Helicase conserved C-terminal domain LIT38_12070 PF00270 DEAD/DEAH box helicase LIT38_12070 PF16124 RecQ zinc-binding LIT38_12075 PF04264 YceI-like domain LIT38_12080 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family LIT38_12085 PF10752 Protein of unknown function (DUF2533) LIT38_12090 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain LIT38_12100 PF00082 Subtilase family LIT38_12105 PF03167 Uracil DNA glycosylase superfamily LIT38_12110 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LIT38_12120 PF01966 HD domain LIT38_12130 PF00912 Transglycosylase LIT38_12130 PF00905 Penicillin binding protein transpeptidase domain LIT38_12135 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LIT38_12150 PF00704 Glycosyl hydrolases family 18 LIT38_12150 PF01476 LysM domain LIT38_12160 PF02342 TerD domain LIT38_12165 PF02342 TerD domain LIT38_12175 PF00248 Aldo/keto reductase family LIT38_12190 PF06725 3D domain LIT38_12190 PF01476 LysM domain LIT38_12195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_12195 PF00512 His Kinase A (phospho-acceptor) domain LIT38_12195 PF00989 PAS fold LIT38_12195 PF13188 PAS domain LIT38_12195 PF13426 PAS domain LIT38_12220 PF14169 Cold-inducible protein YdjO LIT38_12230 PF09844 Uncharacterized conserved protein (COG2071) LIT38_12255 PF07662 Na+ dependent nucleoside transporter C-terminus LIT38_12255 PF01773 Na+ dependent nucleoside transporter N-terminus LIT38_12260 PF00171 Aldehyde dehydrogenase family LIT38_12265 PF02630 SCO1/SenC LIT38_12270 PF01804 Penicillin amidase LIT38_12280 PF13452 N-terminal half of MaoC dehydratase LIT38_12285 PF12848 ABC transporter LIT38_12285 PF00005 ABC transporter LIT38_12295 PF03698 Uncharacterised protein family (UPF0180) LIT38_12300 PF00768 D-alanyl-D-alanine carboxypeptidase LIT38_12300 PF07943 Penicillin-binding protein 5, C-terminal domain LIT38_12315 PF07670 Nucleoside recognition LIT38_12320 PF00491 Arginase family LIT38_12325 PF01979 Amidohydrolase family LIT38_12330 PF17392 Urocanase C-terminal domain LIT38_12330 PF01175 Urocanase Rossmann-like domain LIT38_12330 PF17391 Urocanase N-terminal domain LIT38_12335 PF12833 Helix-turn-helix domain LIT38_12345 PF00188 Cysteine-rich secretory protein family LIT38_12350 PF02901 Pyruvate formate lyase-like LIT38_12350 PF01228 Glycine radical LIT38_12355 PF04055 Radical SAM superfamily LIT38_12365 PF02540 NAD synthase LIT38_12370 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LIT38_12370 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family LIT38_12370 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain LIT38_12380 PF03706 Lysylphosphatidylglycerol synthase TM region LIT38_12380 PF09924 Uncharacterised conserved protein (DUF2156) LIT38_12385 PF02096 60Kd inner membrane protein LIT38_12390 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) LIT38_12405 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like LIT38_12415 PF13193 AMP-binding enzyme C-terminal domain LIT38_12415 PF00501 AMP-binding enzyme LIT38_12430 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LIT38_12430 PF02817 e3 binding domain LIT38_12430 PF00364 Biotin-requiring enzyme LIT38_12435 PF16078 2-oxoglutarate dehydrogenase N-terminus LIT38_12435 PF00676 Dehydrogenase E1 component LIT38_12435 PF16870 2-oxoglutarate dehydrogenase C-terminal LIT38_12435 PF02779 Transketolase, pyrimidine binding domain LIT38_12445 PF08141 Small acid-soluble spore protein H family LIT38_12450 PF01053 Cys/Met metabolism PLP-dependent enzyme LIT38_12455 PF01053 Cys/Met metabolism PLP-dependent enzyme LIT38_12460 PF02219 Methylenetetrahydrofolate reductase LIT38_12460 PF02574 Homocysteine S-methyltransferase LIT38_12465 PF02574 Homocysteine S-methyltransferase LIT38_12465 PF00809 Pterin binding enzyme LIT38_12465 PF02965 Vitamin B12 dependent methionine synthase, activation domain LIT38_12465 PF02310 B12 binding domain LIT38_12465 PF02607 B12 binding domain LIT38_12470 PF13419 Haloacid dehalogenase-like hydrolase LIT38_12505 PF00248 Aldo/keto reductase family LIT38_12510 PF09855 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) LIT38_12515 PF01152 Bacterial-like globin LIT38_12545 PF00188 Cysteine-rich secretory protein family LIT38_12555 PF01212 Beta-eliminating lyase LIT38_12560 PF02790 Cytochrome C oxidase subunit II, transmembrane domain LIT38_12565 PF00115 Cytochrome C and Quinol oxidase polypeptide I LIT38_12570 PF00510 Cytochrome c oxidase subunit III LIT38_12575 PF03626 Prokaryotic Cytochrome C oxidase subunit IV LIT38_12590 PF09515 Thiamine transporter protein (Thia_YuaJ) LIT38_12595 PF06480 FtsH Extracellular LIT38_12595 PF01434 Peptidase family M41 LIT38_12595 PF17862 AAA+ lid domain LIT38_12595 PF00004 ATPase family associated with various cellular activities (AAA) LIT38_12605 PF00440 Bacterial regulatory proteins, tetR family LIT38_12610 PF00873 AcrB/AcrD/AcrF family LIT38_12615 PF04748 Divergent polysaccharide deacetylase LIT38_12620 PF13416 Bacterial extracellular solute-binding protein LIT38_12625 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_12630 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_12635 PF00005 ABC transporter LIT38_12635 PF08402 TOBE domain LIT38_12640 PF04055 Radical SAM superfamily LIT38_12645 PF01242 6-pyruvoyl tetrahydropterin synthase LIT38_12650 PF06508 Queuosine biosynthesis protein QueC LIT38_12660 PF02682 Carboxyltransferase domain, subdomain C and D LIT38_12665 PF02626 Carboxyltransferase domain, subdomain A and B LIT38_12670 PF03746 LamB/YcsF family LIT38_12675 PF01566 Natural resistance-associated macrophage protein LIT38_12680 PF07286 Protein of unknown function (DUF1445) LIT38_12685 PF02872 5'-nucleotidase, C-terminal domain LIT38_12685 PF00149 Calcineurin-like phosphoesterase LIT38_12690 PF00106 short chain dehydrogenase LIT38_12700 PF01594 AI-2E family transporter LIT38_12705 PF01230 HIT domain LIT38_12720 PF04101 Glycosyltransferase family 28 C-terminal domain LIT38_12720 PF03033 Glycosyltransferase family 28 N-terminal domain LIT38_12725 PF00893 Small Multidrug Resistance protein LIT38_12730 PF00893 Small Multidrug Resistance protein LIT38_12740 PF03372 Endonuclease/Exonuclease/phosphatase family LIT38_12750 PF02581 Thiamine monophosphate synthase LIT38_12755 PF08543 Phosphomethylpyrimidine kinase LIT38_12760 PF02110 Hydroxyethylthiazole kinase family LIT38_12770 PF02566 OsmC-like protein LIT38_12780 PF08281 Sigma-70, region 4 LIT38_12780 PF04542 Sigma-70 region 2 LIT38_12800 PF13529 Peptidase_C39 like family LIT38_12810 PF02675 S-adenosylmethionine decarboxylase LIT38_12820 PF07486 Cell Wall Hydrolase LIT38_12830 PF02525 Flavodoxin-like fold LIT38_12840 PF01595 Cyclin M transmembrane N-terminal domain LIT38_12840 PF00571 CBS domain LIT38_12840 PF03471 Transporter associated domain LIT38_12850 PF00005 ABC transporter LIT38_12870 PF07732 Multicopper oxidase LIT38_12875 PF02673 Bacitracin resistance protein BacA LIT38_12885 PF03006 Haemolysin-III related LIT38_12925 PF12996 DUF based on E. rectale Gene description (DUF3880) LIT38_12935 PF00483 Nucleotidyl transferase LIT38_12990 PF03600 Citrate transporter LIT38_12990 PF02080 TrkA-C domain LIT38_12995 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase LIT38_13000 PF04321 RmlD substrate binding domain LIT38_13005 PF16363 GDP-mannose 4,6 dehydratase LIT38_13010 PF00483 Nucleotidyl transferase LIT38_13015 PF16363 GDP-mannose 4,6 dehydratase LIT38_13020 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LIT38_13020 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LIT38_13020 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LIT38_13025 PF16363 GDP-mannose 4,6 dehydratase LIT38_13035 PF01747 ATP-sulfurylase LIT38_13035 PF14306 PUA-like domain LIT38_13045 PF00571 CBS domain LIT38_13045 PF01380 SIS domain LIT38_13050 PF00793 DAHP synthetase I family LIT38_13055 PF02348 Cytidylyltransferase LIT38_13075 PF02811 PHP domain LIT38_13080 PF14171 Toxin SpoIISA, type II toxin-antitoxin system LIT38_13090 PF00171 Aldehyde dehydrogenase family LIT38_13095 PF01613 Flavin reductase like domain LIT38_13105 PF00474 Sodium:solute symporter family LIT38_13115 PF00694 Aconitase C-terminal domain LIT38_13120 PF00330 Aconitase family (aconitate hydratase) LIT38_13125 PF02515 CoA-transferase family III LIT38_13130 PF07729 FCD domain LIT38_13130 PF00392 Bacterial regulatory proteins, gntR family LIT38_13135 PF00682 HMGL-like LIT38_13145 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIT38_13145 PF12729 Four helix bundle sensory module for signal transduction LIT38_13145 PF00672 HAMP domain LIT38_13150 PF07690 Major Facilitator Superfamily LIT38_13165 PF02595 Glycerate kinase family LIT38_13175 PF13556 PucR C-terminal helix-turn-helix domain LIT38_13175 PF17853 GGDEF-like domain LIT38_13175 PF05651 Putative sugar diacid recognition LIT38_13180 PF14824 Sirohaem biosynthesis protein central LIT38_13185 PF01903 CbiX LIT38_13190 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LIT38_13200 PF01747 ATP-sulfurylase LIT38_13200 PF14306 PUA-like domain LIT38_13205 PF01384 Phosphate transporter family LIT38_13210 PF01507 Phosphoadenosine phosphosulfate reductase family LIT38_13225 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LIT38_13225 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LIT38_13230 PF01969 Protein of unknown function DUF111 LIT38_13235 PF00731 AIR carboxylase LIT38_13245 PF01969 Protein of unknown function DUF111 LIT38_13250 PF09861 Lactate racemase N-terminal domain LIT38_13255 PF00005 ABC transporter LIT38_13265 PF01970 Tripartite tricarboxylate transporter TctA family LIT38_13280 PF00378 Enoyl-CoA hydratase/isomerase LIT38_13285 PF02515 CoA-transferase family III LIT38_13290 PF00392 Bacterial regulatory proteins, gntR family LIT38_13290 PF07729 FCD domain LIT38_13300 PF13183 4Fe-4S dicluster domain LIT38_13300 PF02754 Cysteine-rich domain LIT38_13305 PF02913 FAD linked oxidases, C-terminal domain LIT38_13305 PF01565 FAD binding domain LIT38_13310 PF00158 Sigma-54 interaction domain LIT38_13310 PF02954 Bacterial regulatory protein, Fis family LIT38_13310 PF00989 PAS fold LIT38_13320 PF00266 Aminotransferase class-V LIT38_13330 PF00056 lactate/malate dehydrogenase, NAD binding domain LIT38_13330 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LIT38_13335 PF00936 BMC domain LIT38_13340 PF03319 Ethanolamine utilisation protein EutN/carboxysome LIT38_13350 PF06130 Phosphate propanoyltransferase LIT38_13355 PF00936 BMC domain LIT38_13360 PF00465 Iron-containing alcohol dehydrogenase LIT38_13360 PF00171 Aldehyde dehydrogenase family LIT38_13365 PF00936 BMC domain LIT38_13370 PF05985 Ethanolamine ammonia-lyase light chain (EutC) LIT38_13375 PF06751 Ethanolamine ammonia lyase large subunit (EutB) LIT38_13380 PF06277 Ethanolamine utilisation protein EutA LIT38_13385 PF10662 Ethanolamine utilisation - propanediol utilisation LIT38_13390 PF00936 BMC domain LIT38_13395 PF04346 Ethanolamine utilisation protein, EutH LIT38_13400 PF00072 Response regulator receiver domain LIT38_13400 PF03861 ANTAR domain LIT38_13405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_13405 PF12282 Signal transduction histidine kinase LIT38_13405 PF07568 Histidine kinase LIT38_13410 PF05985 Ethanolamine ammonia-lyase light chain (EutC) LIT38_13415 PF06751 Ethanolamine ammonia lyase large subunit (EutB) LIT38_13420 PF03576 Peptidase family S58 LIT38_13425 PF07690 Major Facilitator Superfamily LIT38_13430 PF00106 short chain dehydrogenase LIT38_13435 PF01209 ubiE/COQ5 methyltransferase family LIT38_13440 PF08240 Alcohol dehydrogenase GroES-like domain LIT38_13440 PF00107 Zinc-binding dehydrogenase LIT38_13445 PF02770 Acyl-CoA dehydrogenase, middle domain LIT38_13445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIT38_13445 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIT38_13450 PF04029 2-phosphosulpholactate phosphatase LIT38_13465 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LIT38_13465 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LIT38_13470 PF00440 Bacterial regulatory proteins, tetR family LIT38_13475 PF13193 AMP-binding enzyme C-terminal domain LIT38_13475 PF00501 AMP-binding enzyme LIT38_13485 PF02770 Acyl-CoA dehydrogenase, middle domain LIT38_13485 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIT38_13485 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIT38_13500 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LIT38_13520 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LIT38_13520 PF01568 Molydopterin dinucleotide binding domain LIT38_13520 PF00384 Molybdopterin oxidoreductase LIT38_13520 PF12838 4Fe-4S dicluster domain LIT38_13520 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LIT38_13525 PF07849 Protein of unknown function (DUF1641) LIT38_13535 PF07690 Major Facilitator Superfamily LIT38_13540 PF16925 Tetracyclin repressor-like, C-terminal domain LIT38_13540 PF00440 Bacterial regulatory proteins, tetR family LIT38_13550 PF04607 Region found in RelA / SpoT proteins LIT38_13555 PF01047 MarR family LIT38_13560 PF07690 Major Facilitator Superfamily LIT38_13565 PF06280 Fn3-like domain LIT38_13565 PF00082 Subtilase family LIT38_13565 PF02225 PA domain LIT38_13565 PF00746 LPXTG cell wall anchor motif LIT38_13595 PF07504 Fungalysin/Thermolysin Propeptide Motif LIT38_13595 PF03413 Peptidase propeptide and YPEB domain LIT38_13595 PF01447 Thermolysin metallopeptidase, catalytic domain LIT38_13595 PF02868 Thermolysin metallopeptidase, alpha-helical domain LIT38_13610 PF00486 Transcriptional regulatory protein, C terminal LIT38_13610 PF00072 Response regulator receiver domain LIT38_13615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_13620 PF00005 ABC transporter LIT38_13635 PF13580 SIS domain LIT38_13640 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LIT38_13645 PF00367 phosphotransferase system, EIIB LIT38_13645 PF02378 Phosphotransferase system, EIIC LIT38_13650 PF04794 YdjC-like protein LIT38_13660 PF11975 Family 4 glycosyl hydrolase C-terminal domain LIT38_13660 PF02056 Family 4 glycosyl hydrolase LIT38_13665 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit LIT38_13670 PF02378 Phosphotransferase system, EIIC LIT38_13675 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LIT38_13680 PF00392 Bacterial regulatory proteins, gntR family LIT38_13680 PF07702 UTRA domain LIT38_13685 PF04229 GrpB protein LIT38_13685 PF13673 Acetyltransferase (GNAT) domain LIT38_13690 PF03848 Tellurite resistance protein TehB LIT38_13695 PF10942 Protein of unknown function (DUF2619) LIT38_13700 PF01522 Polysaccharide deacetylase LIT38_13720 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LIT38_13720 PF01568 Molydopterin dinucleotide binding domain LIT38_13720 PF00384 Molybdopterin oxidoreductase LIT38_13725 PF07690 Major Facilitator Superfamily LIT38_13730 PF03009 Glycerophosphoryl diester phosphodiesterase family LIT38_13755 PF00989 PAS fold LIT38_13755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_13755 PF13188 PAS domain LIT38_13755 PF13426 PAS domain LIT38_13755 PF00512 His Kinase A (phospho-acceptor) domain LIT38_13760 PF04166 Pyridoxal phosphate biosynthetic protein PdxA LIT38_13765 PF17042 Nucleotide-binding C-terminal domain LIT38_13765 PF07005 Sugar-binding N-terminal domain LIT38_13770 PF03812 2-keto-3-deoxygluconate permease LIT38_13775 PF13188 PAS domain LIT38_13775 PF02954 Bacterial regulatory protein, Fis family LIT38_13775 PF00158 Sigma-54 interaction domain LIT38_13780 PF00171 Aldehyde dehydrogenase family LIT38_13785 PF00696 Amino acid kinase family LIT38_13785 PF01472 PUA domain LIT38_13790 PF00753 Metallo-beta-lactamase superfamily LIT38_13790 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain LIT38_13790 PF17770 Ribonuclease J C-terminal domain LIT38_13795 PF00575 S1 RNA binding domain LIT38_13800 PF01758 Sodium Bile acid symporter family LIT38_13805 PF03109 ABC1 family LIT38_13810 PF12146 Serine aminopeptidase, S33 LIT38_13830 PF00106 short chain dehydrogenase LIT38_13835 PF00866 Ring hydroxylating beta subunit LIT38_13840 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LIT38_13840 PF00355 Rieske [2Fe-2S] domain LIT38_13845 PF01958 Domain of unknown function DUF108 LIT38_13845 PF03447 Homoserine dehydrogenase, NAD binding domain LIT38_13850 PF00171 Aldehyde dehydrogenase family LIT38_13855 PF00205 Thiamine pyrophosphate enzyme, central domain LIT38_13855 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LIT38_13855 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LIT38_13865 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LIT38_13875 PF07690 Major Facilitator Superfamily LIT38_13880 PF01614 Bacterial transcriptional regulator LIT38_13880 PF09339 IclR helix-turn-helix domain LIT38_13885 PF12697 Alpha/beta hydrolase family LIT38_13890 PF02632 BioY family LIT38_13895 PF00501 AMP-binding enzyme LIT38_13895 PF13193 AMP-binding enzyme C-terminal domain LIT38_13900 PF00108 Thiolase, N-terminal domain LIT38_13900 PF02803 Thiolase, C-terminal domain LIT38_13935 PF01476 LysM domain LIT38_13935 PF01510 N-acetylmuramoyl-L-alanine amidase LIT38_13935 PF01471 Putative peptidoglycan binding domain LIT38_13945 PF00296 Luciferase-like monooxygenase LIT38_13950 PF00892 EamA-like transporter family LIT38_13955 PF12833 Helix-turn-helix domain LIT38_13955 PF02311 AraC-like ligand binding domain LIT38_13975 PF00884 Sulfatase LIT38_13980 PF00266 Aminotransferase class-V LIT38_13985 PF02660 Glycerol-3-phosphate acyltransferase LIT38_13990 PF00005 ABC transporter LIT38_13995 PF00950 ABC 3 transport family LIT38_14000 PF01297 Zinc-uptake complex component A periplasmic LIT38_14010 PF07690 Major Facilitator Superfamily LIT38_14015 PF00083 Sugar (and other) transporter LIT38_14020 PF01263 Aldose 1-epimerase LIT38_14025 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LIT38_14025 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LIT38_14030 PF01261 Xylose isomerase-like TIM barrel LIT38_14035 PF00480 ROK family LIT38_14040 PF02423 Ornithine cyclodeaminase/mu-crystallin family LIT38_14045 PF01266 FAD dependent oxidoreductase LIT38_14050 PF00209 Sodium:neurotransmitter symporter family LIT38_14060 PF01593 Flavin containing amine oxidoreductase LIT38_14065 PF00324 Amino acid permease LIT38_14070 PF00848 Ring hydroxylating alpha subunit (catalytic domain) LIT38_14070 PF00355 Rieske [2Fe-2S] domain LIT38_14075 PF00005 ABC transporter LIT38_14080 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_14090 PF00497 Bacterial extracellular solute-binding proteins, family 3 LIT38_14095 PF07729 FCD domain LIT38_14095 PF00392 Bacterial regulatory proteins, gntR family LIT38_14100 PF13556 PucR C-terminal helix-turn-helix domain LIT38_14100 PF17853 GGDEF-like domain LIT38_14100 PF05651 Putative sugar diacid recognition LIT38_14105 PF16350 FAD dependent oxidoreductase central domain LIT38_14105 PF01266 FAD dependent oxidoreductase LIT38_14105 PF01571 Aminomethyltransferase folate-binding domain LIT38_14105 PF08669 Glycine cleavage T-protein C-terminal barrel domain LIT38_14110 PF05651 Putative sugar diacid recognition LIT38_14110 PF17853 GGDEF-like domain LIT38_14110 PF13556 PucR C-terminal helix-turn-helix domain LIT38_14115 PF00180 Isocitrate/isopropylmalate dehydrogenase LIT38_14120 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LIT38_14120 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LIT38_14125 PF02803 Thiolase, C-terminal domain LIT38_14125 PF00108 Thiolase, N-terminal domain LIT38_14130 PF02770 Acyl-CoA dehydrogenase, middle domain LIT38_14130 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIT38_14130 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIT38_14135 PF00378 Enoyl-CoA hydratase/isomerase LIT38_14140 PF01144 Coenzyme A transferase LIT38_14145 PF01144 Coenzyme A transferase LIT38_14150 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LIT38_14150 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LIT38_14155 PF00171 Aldehyde dehydrogenase family LIT38_14160 PF00155 Aminotransferase class I and II LIT38_14165 PF00005 ABC transporter LIT38_14165 PF17755 UvrA DNA-binding domain LIT38_14165 PF17760 UvrA interaction domain LIT38_14175 PF00258 Flavodoxin LIT38_14185 PF00258 Flavodoxin LIT38_14230 PF01266 FAD dependent oxidoreductase LIT38_14235 PF00005 ABC transporter LIT38_14235 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LIT38_14240 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LIT38_14240 PF00005 ABC transporter LIT38_14245 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_14245 PF12911 N-terminal TM domain of oligopeptide transport permease C LIT38_14250 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_14255 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LIT38_14260 PF07687 Peptidase dimerisation domain LIT38_14260 PF01546 Peptidase family M20/M25/M40 LIT38_14270 PF01266 FAD dependent oxidoreductase LIT38_14275 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIT38_14275 PF17806 Sarcosine oxidase A3 domain LIT38_14280 PF04324 BFD-like [2Fe-2S] binding domain LIT38_14280 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIT38_14290 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_14295 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_14300 PF00005 ABC transporter LIT38_14300 PF08402 TOBE domain LIT38_14305 PF13416 Bacterial extracellular solute-binding protein LIT38_14310 PF07702 UTRA domain LIT38_14310 PF00392 Bacterial regulatory proteins, gntR family LIT38_14325 PF01232 Mannitol dehydrogenase Rossmann domain LIT38_14325 PF08125 Mannitol dehydrogenase C-terminal domain LIT38_14330 PF08279 HTH domain LIT38_14330 PF05043 Mga helix-turn-helix domain LIT38_14330 PF00874 PRD domain LIT38_14330 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LIT38_14330 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LIT38_14335 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LIT38_14335 PF02378 Phosphotransferase system, EIIC LIT38_14335 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LIT38_14355 PF03323 Bacillus/Clostridium GerA spore germination protein LIT38_14360 PF03845 Spore germination protein LIT38_14365 PF07883 Cupin domain LIT38_14385 PF00266 Aminotransferase class-V LIT38_14425 PF00892 EamA-like transporter family LIT38_14430 PF18014 Acetyltransferase (GNAT) domain LIT38_14430 PF13673 Acetyltransferase (GNAT) domain LIT38_14445 PF08241 Methyltransferase domain LIT38_14460 PF16655 PhoD-like phosphatase, N-terminal domain LIT38_14460 PF09423 PhoD-like phosphatase LIT38_14465 PF02416 mttA/Hcf106 family LIT38_14475 PF04309 Glycerol-3-phosphate responsive antiterminator LIT38_14485 PF00905 Penicillin binding protein transpeptidase domain LIT38_14490 PF00392 Bacterial regulatory proteins, gntR family LIT38_14490 PF00155 Aminotransferase class I and II LIT38_14505 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LIT38_14505 PF13378 Enolase C-terminal domain-like LIT38_14515 PF01546 Peptidase family M20/M25/M40 LIT38_14515 PF07687 Peptidase dimerisation domain LIT38_14525 PF05504 Spore germination B3/ GerAC like, C-terminal LIT38_14530 PF03845 Spore germination protein LIT38_14535 PF03323 Bacillus/Clostridium GerA spore germination protein LIT38_14540 PF01979 Amidohydrolase family LIT38_14545 PF03606 C4-dicarboxylate anaerobic carrier LIT38_14550 PF02954 Bacterial regulatory protein, Fis family LIT38_14550 PF00158 Sigma-54 interaction domain LIT38_14550 PF13426 PAS domain LIT38_14555 PF00471 Ribosomal protein L33 LIT38_14570 PF01197 Ribosomal protein L31 LIT38_14575 PF00253 Ribosomal protein S14p/S29e LIT38_14585 PF00005 ABC transporter LIT38_14585 PF13732 Domain of unknown function (DUF4162) LIT38_14610 PF05675 Protein of unknown function (DUF817) LIT38_14615 PF13443 Cro/C1-type HTH DNA-binding domain LIT38_14620 PF11188 Protein of unknown function (DUF2975) LIT38_14625 PF01546 Peptidase family M20/M25/M40 LIT38_14625 PF07687 Peptidase dimerisation domain LIT38_14635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_14635 PF18698 Histidine kinase sensor domain LIT38_14635 PF00512 His Kinase A (phospho-acceptor) domain LIT38_14635 PF00989 PAS fold LIT38_14635 PF00672 HAMP domain LIT38_14640 PF00486 Transcriptional regulatory protein, C terminal LIT38_14640 PF00072 Response regulator receiver domain LIT38_14650 PF00535 Glycosyl transferase family 2 LIT38_14660 PF00072 Response regulator receiver domain LIT38_14660 PF00990 Diguanylate cyclase, GGDEF domain LIT38_14695 PF01903 CbiX LIT38_14705 PF00005 ABC transporter LIT38_14710 PF01032 FecCD transport family LIT38_14720 PF12557 Cob(I)alamin adenosyltransferase N terminal LIT38_14720 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP LIT38_14725 PF00881 Nitroreductase family LIT38_14730 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LIT38_14735 PF14824 Sirohaem biosynthesis protein central LIT38_14740 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LIT38_14740 PF07685 CobB/CobQ-like glutamine amidotransferase domain LIT38_14745 PF01890 Cobalamin synthesis G C-terminus LIT38_14745 PF11761 Cobalamin biosynthesis central region LIT38_14745 PF11760 Cobalamin synthesis G N-terminal LIT38_14750 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LIT38_14755 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LIT38_14760 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LIT38_14765 PF01888 CbiD LIT38_14770 PF02570 Precorrin-8X methylmutase LIT38_14775 PF02571 Precorrin-6x reductase CbiJ/CobK LIT38_14780 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LIT38_14780 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases LIT38_14790 PF00324 Amino acid permease LIT38_14795 PF01546 Peptidase family M20/M25/M40 LIT38_14810 PF01614 Bacterial transcriptional regulator LIT38_14810 PF09339 IclR helix-turn-helix domain LIT38_14820 PF00753 Metallo-beta-lactamase superfamily LIT38_14820 PF16123 Hydroxyacylglutathione hydrolase C-terminus LIT38_14835 PF13393 Histidyl-tRNA synthetase LIT38_14835 PF03129 Anticodon binding domain LIT38_14840 PF05163 DinB family LIT38_14870 PF01037 Lrp/AsnC ligand binding domain LIT38_14875 PF07690 Major Facilitator Superfamily LIT38_14880 PF13302 Acetyltransferase (GNAT) domain LIT38_14890 PF05116 Sucrose-6F-phosphate phosphohydrolase LIT38_14895 PF00356 Bacterial regulatory proteins, lacI family LIT38_14915 PF00892 EamA-like transporter family LIT38_14920 PF00392 Bacterial regulatory proteins, gntR family LIT38_14920 PF00155 Aminotransferase class I and II LIT38_14955 PF00583 Acetyltransferase (GNAT) family LIT38_14965 PF01037 Lrp/AsnC ligand binding domain LIT38_14970 PF00857 Isochorismatase family LIT38_14980 PF05163 DinB family LIT38_14985 PF08241 Methyltransferase domain LIT38_14990 PF00293 NUDIX domain LIT38_14990 PF13344 Haloacid dehalogenase-like hydrolase LIT38_15000 PF05163 DinB family LIT38_15010 PF16326 ABC transporter C-terminal domain LIT38_15010 PF00005 ABC transporter LIT38_15010 PF12848 ABC transporter LIT38_15050 PF01738 Dienelactone hydrolase family LIT38_15055 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LIT38_15060 PF01613 Flavin reductase like domain LIT38_15065 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LIT38_15070 PF07681 DoxX LIT38_15075 PF05979 Bacterial protein of unknown function (DUF896) LIT38_15080 PF13545 Crp-like helix-turn-helix domain LIT38_15080 PF00027 Cyclic nucleotide-binding domain LIT38_15105 PF03845 Spore germination protein LIT38_15120 PF17885 Styrene monooxygenase A putative substrate binding domain LIT38_15130 PF00497 Bacterial extracellular solute-binding proteins, family 3 LIT38_15135 PF12867 DinB superfamily LIT38_15150 PF00403 Heavy-metal-associated domain LIT38_15155 PF00403 Heavy-metal-associated domain LIT38_15165 PF02583 Metal-sensitive transcriptional repressor LIT38_15170 PF01740 STAS domain LIT38_15170 PF00916 Sulfate permease family LIT38_15185 PF08274 PhnA Zinc-Ribbon LIT38_15185 PF03831 PhnA domain LIT38_15205 PF13732 Domain of unknown function (DUF4162) LIT38_15205 PF00005 ABC transporter LIT38_15225 PF02702 Osmosensitive K+ channel His kinase sensor domain LIT38_15230 PF00571 CBS domain LIT38_15240 PF00355 Rieske [2Fe-2S] domain LIT38_15250 PF13460 NAD(P)H-binding LIT38_15280 PF04072 Leucine carboxyl methyltransferase LIT38_15285 PF01348 Type II intron maturase LIT38_15285 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) LIT38_15300 PF00251 Glycosyl hydrolases family 32 N-terminal domain LIT38_15300 PF08244 Glycosyl hydrolases family 32 C terminal LIT38_15310 PF00251 Glycosyl hydrolases family 32 N-terminal domain LIT38_15310 PF08244 Glycosyl hydrolases family 32 C terminal LIT38_15315 PF00294 pfkB family carbohydrate kinase LIT38_15320 PF01547 Bacterial extracellular solute-binding protein LIT38_15325 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_15330 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_15335 PF00356 Bacterial regulatory proteins, lacI family LIT38_15355 PF01022 Bacterial regulatory protein, arsR family LIT38_15360 PF08240 Alcohol dehydrogenase GroES-like domain LIT38_15360 PF00107 Zinc-binding dehydrogenase LIT38_15375 PF01810 LysE type translocator LIT38_15390 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin LIT38_15405 PF01968 Hydantoinase/oxoprolinase LIT38_15405 PF05378 Hydantoinase/oxoprolinase N-terminal region LIT38_15410 PF01381 Helix-turn-helix LIT38_15415 PF01040 UbiA prenyltransferase family LIT38_15425 PF10620 Phosphoribosyl-dephospho-CoA transferase MdcG LIT38_15430 PF01039 Carboxyl transferase domain LIT38_15435 PF06857 Malonate decarboxylase delta subunit (MdcD) LIT38_15440 PF01874 ATP:dephospho-CoA triphosphoribosyl transferase LIT38_15445 PF16957 Malonate decarboxylase, alpha subunit, transporter LIT38_15450 PF00698 Acyl transferase domain LIT38_15470 PF06338 ComK protein LIT38_15490 PF03606 C4-dicarboxylate anaerobic carrier LIT38_15495 PF01546 Peptidase family M20/M25/M40 LIT38_15500 PF03466 LysR substrate binding domain LIT38_15500 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIT38_15525 PF01979 Amidohydrolase family LIT38_15530 PF01321 Creatinase/Prolidase N-terminal domain LIT38_15530 PF00557 Metallopeptidase family M24 LIT38_15535 PF00474 Sodium:solute symporter family LIT38_15540 PF01979 Amidohydrolase family LIT38_15545 PF17853 GGDEF-like domain LIT38_15545 PF13556 PucR C-terminal helix-turn-helix domain LIT38_15555 PF01810 LysE type translocator LIT38_15560 PF01381 Helix-turn-helix LIT38_15560 PF07883 Cupin domain LIT38_15565 PF00108 Thiolase, N-terminal domain LIT38_15565 PF02803 Thiolase, C-terminal domain LIT38_15570 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LIT38_15570 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LIT38_15580 PF00501 AMP-binding enzyme LIT38_15580 PF13193 AMP-binding enzyme C-terminal domain LIT38_15590 PF02667 Short chain fatty acid transporter LIT38_15600 PF01842 ACT domain LIT38_15600 PF00551 Formyl transferase LIT38_15605 PF00158 Sigma-54 interaction domain LIT38_15605 PF02954 Bacterial regulatory protein, Fis family LIT38_15605 PF01590 GAF domain LIT38_15610 PF00107 Zinc-binding dehydrogenase LIT38_15610 PF08240 Alcohol dehydrogenase GroES-like domain LIT38_15615 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LIT38_15615 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIT38_15620 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LIT38_15620 PF02817 e3 binding domain LIT38_15620 PF00364 Biotin-requiring enzyme LIT38_15625 PF02780 Transketolase, C-terminal domain LIT38_15625 PF02779 Transketolase, pyrimidine binding domain LIT38_15630 PF00676 Dehydrogenase E1 component LIT38_15645 PF00881 Nitroreductase family LIT38_15650 PF02277 Phosphoribosyltransferase LIT38_15655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIT38_15655 PF03466 LysR substrate binding domain LIT38_15675 PF00005 ABC transporter LIT38_15680 PF00196 Bacterial regulatory proteins, luxR family LIT38_15680 PF00072 Response regulator receiver domain LIT38_15685 PF07730 Histidine kinase LIT38_15690 PF04542 Sigma-70 region 2 LIT38_15690 PF08281 Sigma-70, region 4 LIT38_15690 PF12680 SnoaL-like domain LIT38_15695 PF02627 Carboxymuconolactone decarboxylase family LIT38_15720 PF00580 UvrD/REP helicase N-terminal domain LIT38_15720 PF13361 UvrD-like helicase C-terminal domain LIT38_15725 PF02463 RecF/RecN/SMC N terminal domain LIT38_15735 PF03852 DNA mismatch endonuclease Vsr LIT38_15740 PF00145 C-5 cytosine-specific DNA methylase LIT38_15750 PF12705 PD-(D/E)XK nuclease superfamily LIT38_15750 PF00580 UvrD/REP helicase N-terminal domain LIT38_15750 PF13361 UvrD-like helicase C-terminal domain LIT38_15760 PF13361 UvrD-like helicase C-terminal domain LIT38_15760 PF00580 UvrD/REP helicase N-terminal domain LIT38_15760 PF12705 PD-(D/E)XK nuclease superfamily LIT38_15780 PF00580 UvrD/REP helicase N-terminal domain LIT38_15780 PF13361 UvrD-like helicase C-terminal domain LIT38_15795 PF13361 UvrD-like helicase C-terminal domain LIT38_15795 PF12705 PD-(D/E)XK nuclease superfamily LIT38_15795 PF00580 UvrD/REP helicase N-terminal domain LIT38_15800 PF00145 C-5 cytosine-specific DNA methylase LIT38_15835 PF13538 UvrD-like helicase C-terminal domain LIT38_15855 PF13183 4Fe-4S dicluster domain LIT38_15855 PF02754 Cysteine-rich domain LIT38_15860 PF01565 FAD binding domain LIT38_15860 PF02913 FAD linked oxidases, C-terminal domain LIT38_15865 PF00171 Aldehyde dehydrogenase family LIT38_15870 PF00202 Aminotransferase class-III LIT38_15875 PF00132 Bacterial transferase hexapeptide (six repeats) LIT38_15880 PF02515 CoA-transferase family III LIT38_15890 PF00378 Enoyl-CoA hydratase/isomerase LIT38_15895 PF03812 2-keto-3-deoxygluconate permease LIT38_15920 PF02954 Bacterial regulatory protein, Fis family LIT38_15920 PF13188 PAS domain LIT38_15920 PF00158 Sigma-54 interaction domain LIT38_15930 PF05163 DinB family LIT38_15935 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LIT38_15935 PF01476 LysM domain LIT38_15960 PF02557 D-alanyl-D-alanine carboxypeptidase LIT38_15970 PF04239 Protein of unknown function (DUF421) LIT38_15975 PF02557 D-alanyl-D-alanine carboxypeptidase LIT38_15980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_15980 PF00512 His Kinase A (phospho-acceptor) domain LIT38_15985 PF00072 Response regulator receiver domain LIT38_15985 PF00486 Transcriptional regulatory protein, C terminal LIT38_15990 PF03323 Bacillus/Clostridium GerA spore germination protein LIT38_16000 PF03845 Spore germination protein LIT38_16005 PF02566 OsmC-like protein LIT38_16010 PF02627 Carboxymuconolactone decarboxylase family LIT38_16015 PF02082 Transcriptional regulator LIT38_16020 PF00202 Aminotransferase class-III LIT38_16030 PF02632 BioY family LIT38_16045 PF02653 Branched-chain amino acid transport system / permease component LIT38_16050 PF00005 ABC transporter LIT38_16055 PF12399 Branched-chain amino acid ATP-binding cassette transporter LIT38_16055 PF00005 ABC transporter LIT38_16070 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LIT38_16070 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LIT38_16075 PF01575 MaoC like domain LIT38_16080 PF00501 AMP-binding enzyme LIT38_16080 PF13193 AMP-binding enzyme C-terminal domain LIT38_16095 PF00375 Sodium:dicarboxylate symporter family LIT38_16130 PF13243 Squalene-hopene cyclase C-terminal domain LIT38_16130 PF13249 Squalene-hopene cyclase N-terminal domain LIT38_16145 PF00082 Subtilase family LIT38_16145 PF05922 Peptidase inhibitor I9 LIT38_16155 PF00561 alpha/beta hydrolase fold LIT38_16165 PF07883 Cupin domain LIT38_16185 PF00881 Nitroreductase family LIT38_16205 PF03553 Na+/H+ antiporter family LIT38_16210 PF01593 Flavin containing amine oxidoreductase LIT38_16215 PF00488 MutS domain V LIT38_16215 PF01713 Smr domain LIT38_16240 PF03932 CutC family LIT38_16250 PF00480 ROK family LIT38_16260 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LIT38_16260 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LIT38_16270 PF00005 ABC transporter LIT38_16270 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LIT38_16275 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LIT38_16275 PF00005 ABC transporter LIT38_16280 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_16280 PF12911 N-terminal TM domain of oligopeptide transport permease C LIT38_16285 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_16290 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LIT38_16295 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_16300 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_16305 PF00005 ABC transporter LIT38_16315 PF00005 ABC transporter LIT38_16320 PF07969 Amidohydrolase family LIT38_16325 PF00005 ABC transporter LIT38_16330 PF06007 Phosphonate metabolism protein PhnJ LIT38_16335 PF05861 Bacterial phosphonate metabolism protein (PhnI) LIT38_16350 PF00392 Bacterial regulatory proteins, gntR family LIT38_16355 PF00132 Bacterial transferase hexapeptide (six repeats) LIT38_16360 PF02811 PHP domain LIT38_16365 PF02416 mttA/Hcf106 family LIT38_16380 PF00455 DeoR C terminal sensor domain LIT38_16380 PF08220 DeoR-like helix-turn-helix domain LIT38_16390 PF01966 HD domain LIT38_16400 PF01740 STAS domain LIT38_16405 PF08892 YqcI/YcgG family LIT38_16410 PF04239 Protein of unknown function (DUF421) LIT38_16415 PF12823 Domain of unknown function (DUF3817) LIT38_16415 PF03176 MMPL family LIT38_16420 PF00072 Response regulator receiver domain LIT38_16420 PF00486 Transcriptional regulatory protein, C terminal LIT38_16425 PF00512 His Kinase A (phospho-acceptor) domain LIT38_16425 PF00672 HAMP domain LIT38_16425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_16440 PF01451 Low molecular weight phosphotyrosine protein phosphatase LIT38_16445 PF02040 Arsenical pump membrane protein LIT38_16450 PF01022 Bacterial regulatory protein, arsR family LIT38_16470 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIT38_16480 PF00893 Small Multidrug Resistance protein LIT38_16485 PF00893 Small Multidrug Resistance protein LIT38_16490 PF00440 Bacterial regulatory proteins, tetR family LIT38_16490 PF17934 Tetracyclin repressor-like, C-terminal domain LIT38_16510 PF07690 Major Facilitator Superfamily LIT38_16515 PF04346 Ethanolamine utilisation protein, EutH LIT38_16520 PF00557 Metallopeptidase family M24 LIT38_16520 PF01321 Creatinase/Prolidase N-terminal domain LIT38_16525 PF13188 PAS domain LIT38_16525 PF02954 Bacterial regulatory protein, Fis family LIT38_16525 PF00158 Sigma-54 interaction domain LIT38_16535 PF02837 Glycosyl hydrolases family 2, sugar binding domain LIT38_16535 PF16353 Domain of unknown function(DUF4981) LIT38_16535 PF02929 Beta galactosidase small chain LIT38_16535 PF02836 Glycosyl hydrolases family 2, TIM barrel domain LIT38_16535 PF00703 Glycosyl hydrolases family 2 LIT38_16540 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_16545 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_16550 PF01547 Bacterial extracellular solute-binding protein LIT38_16555 PF02347 Glycine cleavage system P-protein LIT38_16560 PF02347 Glycine cleavage system P-protein LIT38_16570 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain LIT38_16570 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain LIT38_16575 PF16363 GDP-mannose 4,6 dehydratase LIT38_16580 PF00288 GHMP kinases N terminal domain LIT38_16580 PF08544 GHMP kinases C terminal LIT38_16580 PF10509 Galactokinase galactose-binding signature LIT38_16590 PF01047 MarR family LIT38_16590 PF00480 ROK family LIT38_16600 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_16605 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_16610 PF01547 Bacterial extracellular solute-binding protein LIT38_16615 PF12833 Helix-turn-helix domain LIT38_16615 PF00072 Response regulator receiver domain LIT38_16630 PF04542 Sigma-70 region 2 LIT38_16630 PF04545 Sigma-70, region 4 LIT38_16650 PF00392 Bacterial regulatory proteins, gntR family LIT38_16650 PF00155 Aminotransferase class I and II LIT38_16655 PF00892 EamA-like transporter family LIT38_16660 PF03601 Conserved hypothetical protein 698 LIT38_16665 PF03466 LysR substrate binding domain LIT38_16665 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIT38_16675 PF01979 Amidohydrolase family LIT38_16680 PF00474 Sodium:solute symporter family LIT38_16685 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LIT38_16685 PF00205 Thiamine pyrophosphate enzyme, central domain LIT38_16685 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LIT38_16690 PF00202 Aminotransferase class-III LIT38_16695 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LIT38_16695 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LIT38_16700 PF07702 UTRA domain LIT38_16700 PF00392 Bacterial regulatory proteins, gntR family LIT38_16705 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LIT38_16725 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LIT38_16725 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LIT38_16740 PF01522 Polysaccharide deacetylase LIT38_16760 PF00232 Glycosyl hydrolase family 1 LIT38_16770 PF07690 Major Facilitator Superfamily LIT38_16780 PF13302 Acetyltransferase (GNAT) domain LIT38_16785 PF00092 von Willebrand factor type A domain LIT38_16790 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III LIT38_16790 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal LIT38_16810 PF00356 Bacterial regulatory proteins, lacI family LIT38_16810 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family LIT38_16830 PF13302 Acetyltransferase (GNAT) domain LIT38_16845 PF07690 Major Facilitator Superfamily LIT38_16865 PF03358 NADPH-dependent FMN reductase LIT38_16870 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily LIT38_16875 PF07681 DoxX LIT38_16880 PF01638 HxlR-like helix-turn-helix LIT38_16885 PF01048 Phosphorylase superfamily LIT38_16890 PF05525 Branched-chain amino acid transport protein LIT38_16895 PF00392 Bacterial regulatory proteins, gntR family LIT38_16895 PF07729 FCD domain LIT38_16900 PF00574 Clp protease LIT38_16910 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LIT38_16910 PF01842 ACT domain LIT38_16910 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LIT38_16920 PF03845 Spore germination protein LIT38_16925 PF05504 Spore germination B3/ GerAC like, C-terminal LIT38_16930 PF03323 Bacillus/Clostridium GerA spore germination protein LIT38_16935 PF04519 Polymer-forming cytoskeletal LIT38_16940 PF13171 Protein of unknown function (DUF4004) LIT38_16960 PF08863 YolD-like protein LIT38_16975 PF01047 MarR family LIT38_16980 PF02386 Cation transport protein LIT38_16985 PF02080 TrkA-C domain LIT38_16985 PF02254 TrkA-N domain LIT38_16990 PF04231 Endonuclease I LIT38_17000 PF11954 Domain of unknown function (DUF3471) LIT38_17000 PF00144 Beta-lactamase LIT38_17020 PF00375 Sodium:dicarboxylate symporter family LIT38_17025 PF13411 MerR HTH family regulatory protein LIT38_17030 PF03471 Transporter associated domain LIT38_17030 PF00571 CBS domain LIT38_17030 PF01595 Cyclin M transmembrane N-terminal domain LIT38_17035 PF09335 SNARE associated Golgi protein LIT38_17050 PF03613 PTS system mannose/fructose/sorbose family IID component LIT38_17055 PF03609 PTS system sorbose-specific iic component LIT38_17060 PF03830 PTS system sorbose subfamily IIB component LIT38_17060 PF03610 PTS system fructose IIA component LIT38_17070 PF00874 PRD domain LIT38_17070 PF00158 Sigma-54 interaction domain LIT38_17085 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH LIT38_17085 PF04740 LXG domain of WXG superfamily LIT38_17120 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LIT38_17125 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_17130 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_17130 PF12911 N-terminal TM domain of oligopeptide transport permease C LIT38_17135 PF00005 ABC transporter LIT38_17135 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LIT38_17140 PF08352 Oligopeptide/dipeptide transporter, C-terminal region LIT38_17140 PF00005 ABC transporter LIT38_17145 PF01321 Creatinase/Prolidase N-terminal domain LIT38_17145 PF00557 Metallopeptidase family M24 LIT38_17180 PF05656 Protein of unknown function (DUF805) LIT38_17190 PF08281 Sigma-70, region 4 LIT38_17190 PF04542 Sigma-70 region 2 LIT38_17195 PF00512 His Kinase A (phospho-acceptor) domain LIT38_17195 PF00672 HAMP domain LIT38_17195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_17200 PF00486 Transcriptional regulatory protein, C terminal LIT38_17200 PF00072 Response regulator receiver domain LIT38_17205 PF02768 DNA polymerase III beta subunit, C-terminal domain LIT38_17205 PF02767 DNA polymerase III beta subunit, central domain LIT38_17205 PF00712 DNA polymerase III beta subunit, N-terminal domain LIT38_17210 PF00293 NUDIX domain LIT38_17215 PF00805 Pentapeptide repeats (8 copies) LIT38_17230 PF00005 ABC transporter LIT38_17265 PF04434 SWIM zinc finger LIT38_17265 PF00176 SNF2 family N-terminal domain LIT38_17265 PF00271 Helicase conserved C-terminal domain LIT38_17280 PF01810 LysE type translocator LIT38_17285 PF12368 Rhodanase C-terminal LIT38_17285 PF17773 UPF0176 acylphosphatase like domain LIT38_17285 PF00581 Rhodanese-like domain LIT38_17315 PF00583 Acetyltransferase (GNAT) family LIT38_17335 PF00266 Aminotransferase class-V LIT38_17345 PF01077 Nitrite and sulphite reductase 4Fe-4S domain LIT38_17345 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain LIT38_17350 PF00175 Oxidoreductase NAD-binding domain LIT38_17350 PF00667 FAD binding domain LIT38_17350 PF00258 Flavodoxin LIT38_17355 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIT38_17355 PF03466 LysR substrate binding domain LIT38_17370 PF04073 Aminoacyl-tRNA editing domain LIT38_17375 PF06081 Aromatic acid exporter family member 1 LIT38_17380 PF00550 Phosphopantetheine attachment site LIT38_17380 PF07993 Male sterility protein LIT38_17380 PF00501 AMP-binding enzyme LIT38_17395 PF00196 Bacterial regulatory proteins, luxR family LIT38_17395 PF00072 Response regulator receiver domain LIT38_17400 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LIT38_17400 PF00384 Molybdopterin oxidoreductase LIT38_17400 PF01568 Molydopterin dinucleotide binding domain LIT38_17420 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LIT38_17420 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LIT38_17425 PF02535 ZIP Zinc transporter LIT38_17435 PF05726 Pirin C-terminal cupin domain LIT38_17435 PF02678 Pirin LIT38_17440 PF03358 NADPH-dependent FMN reductase LIT38_17445 PF01738 Dienelactone hydrolase family LIT38_17455 PF01047 MarR family LIT38_17460 PF00465 Iron-containing alcohol dehydrogenase LIT38_17465 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_17475 PF13673 Acetyltransferase (GNAT) domain LIT38_17480 PF01544 CorA-like Mg2+ transporter protein LIT38_17485 PF05525 Branched-chain amino acid transport protein LIT38_17505 PF00881 Nitroreductase family LIT38_17510 PF00583 Acetyltransferase (GNAT) family LIT38_17525 PF03358 NADPH-dependent FMN reductase LIT38_17525 PF01566 Natural resistance-associated macrophage protein LIT38_17535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_17535 PF16736 Single Cache-like LIT38_17535 PF00512 His Kinase A (phospho-acceptor) domain LIT38_17535 PF00989 PAS fold LIT38_17540 PF00072 Response regulator receiver domain LIT38_17540 PF00486 Transcriptional regulatory protein, C terminal LIT38_17550 PF01554 MatE LIT38_17560 PF08327 Activator of Hsp90 ATPase homolog 1-like protein LIT38_17570 PF01209 ubiE/COQ5 methyltransferase family LIT38_17580 PF00005 ABC transporter LIT38_17585 PF13458 Periplasmic binding protein LIT38_17595 PF02653 Branched-chain amino acid transport system / permease component LIT38_17600 PF00501 AMP-binding enzyme LIT38_17605 PF12399 Branched-chain amino acid ATP-binding cassette transporter LIT38_17605 PF00005 ABC transporter LIT38_17620 PF01541 GIY-YIG catalytic domain LIT38_17625 PF01066 CDP-alcohol phosphatidyltransferase LIT38_17630 PF02515 CoA-transferase family III LIT38_17635 PF13193 AMP-binding enzyme C-terminal domain LIT38_17635 PF00501 AMP-binding enzyme LIT38_17640 PF02803 Thiolase, C-terminal domain LIT38_17640 PF00108 Thiolase, N-terminal domain LIT38_17645 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIT38_17645 PF02770 Acyl-CoA dehydrogenase, middle domain LIT38_17645 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIT38_17650 PF00106 short chain dehydrogenase LIT38_17655 PF04542 Sigma-70 region 2 LIT38_17655 PF08281 Sigma-70, region 4 LIT38_17665 PF00005 ABC transporter LIT38_17670 PF00392 Bacterial regulatory proteins, gntR family LIT38_17675 PF02652 L-lactate permease LIT38_17680 PF09339 IclR helix-turn-helix domain LIT38_17680 PF01614 Bacterial transcriptional regulator LIT38_17685 PF01557 Fumarylacetoacetate (FAA) hydrolase family LIT38_17690 PF01274 Malate synthase LIT38_17695 PF01565 FAD binding domain LIT38_17695 PF02913 FAD linked oxidases, C-terminal domain LIT38_17700 PF02754 Cysteine-rich domain LIT38_17700 PF13183 4Fe-4S dicluster domain LIT38_17705 PF02913 FAD linked oxidases, C-terminal domain LIT38_17705 PF01565 FAD binding domain LIT38_17710 PF00392 Bacterial regulatory proteins, gntR family LIT38_17710 PF07729 FCD domain LIT38_17715 PF00877 NlpC/P60 family LIT38_17720 PF10057 Uncharacterized conserved protein (DUF2294) LIT38_17725 PF02634 FdhD/NarQ family LIT38_17735 PF00072 Response regulator receiver domain LIT38_17735 PF01966 HD domain LIT38_17740 PF07849 Protein of unknown function (DUF1641) LIT38_17745 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region LIT38_17745 PF01568 Molydopterin dinucleotide binding domain LIT38_17745 PF00384 Molybdopterin oxidoreductase LIT38_17745 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LIT38_17745 PF12838 4Fe-4S dicluster domain LIT38_17760 PF00583 Acetyltransferase (GNAT) family LIT38_17765 PF00795 Carbon-nitrogen hydrolase LIT38_17765 PF00583 Acetyltransferase (GNAT) family LIT38_17785 PF02378 Phosphotransferase system, EIIC LIT38_17785 PF00367 phosphotransferase system, EIIB LIT38_17790 PF07075 Protein of unknown function (DUF1343) LIT38_17795 PF00933 Glycosyl hydrolase family 3 N terminal domain LIT38_17795 PF01915 Glycosyl hydrolase family 3 C-terminal domain LIT38_17800 PF00144 Beta-lactamase LIT38_17805 PF00005 ABC transporter LIT38_17805 PF00664 ABC transporter transmembrane region LIT38_17810 PF06738 Putative threonine/serine exporter LIT38_17810 PF12821 Threonine/Serine exporter, ThrE LIT38_17815 PF06738 Putative threonine/serine exporter LIT38_17820 PF13411 MerR HTH family regulatory protein LIT38_17845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_17845 PF07730 Histidine kinase LIT38_17855 PF00196 Bacterial regulatory proteins, luxR family LIT38_17855 PF00072 Response regulator receiver domain LIT38_17865 PF07690 Major Facilitator Superfamily LIT38_17895 PF00384 Molybdopterin oxidoreductase LIT38_17895 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LIT38_17895 PF01568 Molydopterin dinucleotide binding domain LIT38_17915 PF11553 Protein of unknown function (DUF3231) LIT38_17935 PF03717 Penicillin-binding Protein dimerisation domain LIT38_17935 PF00905 Penicillin binding protein transpeptidase domain LIT38_17940 PF05163 DinB family LIT38_17950 PF02586 SOS response associated peptidase (SRAP) LIT38_17960 PF10372 Bacterial membrane-spanning protein N-terminus LIT38_17960 PF02457 DisA bacterial checkpoint controller nucleotide-binding LIT38_17965 PF13649 Methyltransferase domain LIT38_17975 PF04011 LemA family LIT38_17990 PF00005 ABC transporter LIT38_17995 PF00290 Tryptophan synthase alpha chain LIT38_18000 PF00291 Pyridoxal-phosphate dependent enzyme LIT38_18005 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase LIT38_18010 PF00218 Indole-3-glycerol phosphate synthase LIT38_18015 PF02885 Glycosyl transferase family, helical bundle domain LIT38_18015 PF00591 Glycosyl transferase family, a/b domain LIT38_18020 PF00591 Glycosyl transferase family, a/b domain LIT38_18020 PF02885 Glycosyl transferase family, helical bundle domain LIT38_18020 PF00117 Glutamine amidotransferase class-I LIT38_18025 PF04715 Anthranilate synthase component I, N terminal region LIT38_18025 PF00425 chorismate binding enzyme LIT38_18030 PF03475 3-alpha domain LIT38_18030 PF03473 MOSC domain LIT38_18035 PF07690 Major Facilitator Superfamily LIT38_18040 PF00561 alpha/beta hydrolase fold LIT38_18070 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LIT38_18070 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LIT38_18075 PF00294 pfkB family carbohydrate kinase LIT38_18080 PF08220 DeoR-like helix-turn-helix domain LIT38_18080 PF00455 DeoR C terminal sensor domain LIT38_18090 PF02225 PA domain LIT38_18090 PF04389 Peptidase family M28 LIT38_18095 PF02632 BioY family LIT38_18100 PF06968 Biotin and Thiamin Synthesis associated domain LIT38_18100 PF04055 Radical SAM superfamily LIT38_18105 PF00268 Ribonucleotide reductase, small chain LIT38_18110 PF00317 Ribonucleotide reductase, all-alpha domain LIT38_18110 PF03477 ATP cone domain LIT38_18110 PF02867 Ribonucleotide reductase, barrel domain LIT38_18115 PF00403 Heavy-metal-associated domain LIT38_18120 PF00403 Heavy-metal-associated domain LIT38_18125 PF02583 Metal-sensitive transcriptional repressor LIT38_18135 PF08141 Small acid-soluble spore protein H family LIT38_18140 PF01810 LysE type translocator LIT38_18185 PF00583 Acetyltransferase (GNAT) family LIT38_18195 PF00313 'Cold-shock' DNA-binding domain LIT38_18200 PF00270 DEAD/DEAH box helicase LIT38_18200 PF00271 Helicase conserved C-terminal domain LIT38_18205 PF00313 'Cold-shock' DNA-binding domain LIT38_18210 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LIT38_18210 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LIT38_18225 PF16901 C-terminal domain of alpha-glycerophosphate oxidase LIT38_18225 PF01266 FAD dependent oxidoreductase LIT38_18230 PF02782 FGGY family of carbohydrate kinases, C-terminal domain LIT38_18230 PF00370 FGGY family of carbohydrate kinases, N-terminal domain LIT38_18235 PF00230 Major intrinsic protein LIT38_18240 PF04309 Glycerol-3-phosphate responsive antiterminator LIT38_18245 PF01569 PAP2 superfamily LIT38_18250 PF02735 Ku70/Ku80 beta-barrel domain LIT38_18255 PF01068 ATP dependent DNA ligase domain LIT38_18260 PF01678 Diaminopimelate epimerase LIT38_18270 PF00563 EAL domain LIT38_18270 PF08668 HDOD domain LIT38_18275 PF00860 Permease family LIT38_18280 PF00885 6,7-dimethyl-8-ribityllumazine synthase LIT38_18285 PF00925 GTP cyclohydrolase II LIT38_18285 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase LIT38_18290 PF00677 Lumazine binding domain LIT38_18295 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LIT38_18295 PF01872 RibD C-terminal domain LIT38_18300 PF12787 EcsC protein family LIT38_18305 PF00578 AhpC/TSA family LIT38_18315 PF00082 Subtilase family LIT38_18320 PF01734 Patatin-like phospholipase LIT38_18325 PF12679 ABC-2 family transporter protein LIT38_18330 PF13732 Domain of unknown function (DUF4162) LIT38_18330 PF00005 ABC transporter LIT38_18335 PF13396 Phospholipase_D-nuclease N-terminal LIT38_18350 PF02673 Bacitracin resistance protein BacA LIT38_18355 PF09335 SNARE associated Golgi protein LIT38_18360 PF01979 Amidohydrolase family LIT38_18360 PF00449 Urease alpha-subunit, N-terminal domain LIT38_18375 PF01554 MatE LIT38_18395 PF00011 Hsp20/alpha crystallin family LIT38_18405 PF00188 Cysteine-rich secretory protein family LIT38_18410 PF13115 YtkA-like LIT38_18415 PF00512 His Kinase A (phospho-acceptor) domain LIT38_18415 PF18698 Histidine kinase sensor domain LIT38_18415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_18415 PF00989 PAS fold LIT38_18415 PF00672 HAMP domain LIT38_18420 PF00486 Transcriptional regulatory protein, C terminal LIT38_18420 PF00072 Response regulator receiver domain LIT38_18445 PF07683 Cobalamin synthesis protein cobW C-terminal domain LIT38_18445 PF02492 CobW/HypB/UreG, nucleotide-binding domain LIT38_18455 PF08241 Methyltransferase domain LIT38_18460 PF03816 Cell envelope-related transcriptional attenuator domain LIT38_18465 PF01471 Putative peptidoglycan binding domain LIT38_18465 PF17820 PDZ domain LIT38_18465 PF03572 Peptidase family S41 LIT38_18470 PF00403 Heavy-metal-associated domain LIT38_18480 PF02557 D-alanyl-D-alanine carboxypeptidase LIT38_18485 PF01048 Phosphorylase superfamily LIT38_18495 PF14191 YodL-like LIT38_18500 PF03009 Glycerophosphoryl diester phosphodiesterase family LIT38_18505 PF07070 SpoOM protein LIT38_18510 PF14162 YozD-like protein LIT38_18525 PF06855 YozE SAM-like fold LIT38_18530 PF14122 YokU-like protein, putative antitoxin LIT38_18535 PF12544 Lysine-2,3-aminomutase LIT38_18540 PF13426 PAS domain LIT38_18540 PF00158 Sigma-54 interaction domain LIT38_18540 PF02954 Bacterial regulatory protein, Fis family LIT38_18545 PF00583 Acetyltransferase (GNAT) family LIT38_18550 PF00171 Aldehyde dehydrogenase family LIT38_18555 PF00202 Aminotransferase class-III LIT38_18560 PF07687 Peptidase dimerisation domain LIT38_18560 PF01546 Peptidase family M20/M25/M40 LIT38_18565 PF01144 Coenzyme A transferase LIT38_18570 PF01144 Coenzyme A transferase LIT38_18575 PF00202 Aminotransferase class-III LIT38_18585 PF02016 LD-carboxypeptidase N-terminal domain LIT38_18585 PF17676 LD-carboxypeptidase C-terminal domain LIT38_18610 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 LIT38_18615 PF01641 SelR domain LIT38_18620 PF01625 Peptide methionine sulfoxide reductase LIT38_18625 PF03193 RsgA GTPase LIT38_18635 PF13472 GDSL-like Lipase/Acylhydrolase family LIT38_18640 PF02630 SCO1/SenC LIT38_18650 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_18650 PF13426 PAS domain LIT38_18650 PF13188 PAS domain LIT38_18650 PF00989 PAS fold LIT38_18650 PF00512 His Kinase A (phospho-acceptor) domain LIT38_18655 PF02645 Uncharacterised protein, DegV family COG1307 LIT38_18665 PF00902 Sec-independent protein translocase protein (TatC) LIT38_18670 PF02416 mttA/Hcf106 family LIT38_18675 PF00291 Pyridoxal-phosphate dependent enzyme LIT38_18675 PF00585 C-terminal regulatory domain of Threonine dehydratase LIT38_18685 PF01553 Acyltransferase LIT38_18690 PF00186 Dihydrofolate reductase LIT38_18695 PF00303 Thymidylate synthase LIT38_18705 PF02342 TerD domain LIT38_18710 PF05816 Toxic anion resistance protein (TelA) LIT38_18715 PF14266 Putative component of 'biosynthetic module' LIT38_18745 PF03741 Integral membrane protein TerC family LIT38_18750 PF02342 TerD domain LIT38_18755 PF14005 YpjP-like protein LIT38_18760 PF00155 Aminotransferase class I and II LIT38_18765 PF04445 Putative SAM-dependent methyltransferase LIT38_18770 PF06491 Disulphide isomerase LIT38_18775 PF00920 Dehydratase family LIT38_18780 PF08712 Scaffold protein Nfu/NifU N terminal LIT38_18780 PF13769 Virulence factor LIT38_18785 PF12848 ABC transporter LIT38_18785 PF16326 ABC transporter C-terminal domain LIT38_18785 PF00005 ABC transporter LIT38_18790 PF01966 HD domain LIT38_18795 PF02645 Uncharacterised protein, DegV family COG1307 LIT38_18815 PF01268 Formate--tetrahydrofolate ligase LIT38_18820 PF04204 Homoserine O-succinyltransferase LIT38_18830 PF12697 Alpha/beta hydrolase family LIT38_18830 PF08241 Methyltransferase domain LIT38_18835 PF13031 Protein of unknown function (DUF3892) LIT38_18840 PF01325 Iron dependent repressor, N-terminal DNA binding domain LIT38_18840 PF02742 Iron dependent repressor, metal binding and dimerisation domain LIT38_18845 PF01396 Topoisomerase DNA binding C4 zinc finger LIT38_18845 PF13342 C-terminal repeat of topoisomerase LIT38_18845 PF01751 Toprim domain LIT38_18845 PF01131 DNA topoisomerase LIT38_18850 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LIT38_18850 PF17999 Pullulanase N1-terminal domain LIT38_18850 PF00128 Alpha amylase, catalytic domain LIT38_18860 PF00313 'Cold-shock' DNA-binding domain LIT38_18870 PF13456 Reverse transcriptase-like LIT38_18875 PF02592 Putative vitamin uptake transporter LIT38_18880 PF13456 Reverse transcriptase-like LIT38_18895 PF02681 Divergent PAP2 family LIT38_18905 PF01367 5'-3' exonuclease, C-terminal SAM fold LIT38_18905 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LIT38_18915 PF00581 Rhodanese-like domain LIT38_18930 PF00350 Dynamin family LIT38_18935 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family LIT38_18940 PF02797 Chalcone and stilbene synthases, C-terminal domain LIT38_18940 PF00195 Chalcone and stilbene synthases, N-terminal domain LIT38_18950 PF00860 Permease family LIT38_18955 PF00156 Phosphoribosyl transferase domain LIT38_18965 PF00116 Cytochrome C oxidase subunit II, periplasmic domain LIT38_18965 PF09125 Cytochrome C oxidase subunit II, transmembrane LIT38_18970 PF00115 Cytochrome C and Quinol oxidase polypeptide I LIT38_18980 PF00892 EamA-like transporter family LIT38_18985 PF02074 Carboxypeptidase Taq (M32) metallopeptidase LIT38_19015 PF01883 Iron-sulfur cluster assembly protein LIT38_19020 PF13307 Helicase C-terminal domain LIT38_19030 PF01170 Putative RNA methylase family UPF0020 LIT38_19030 PF02926 THUMP domain LIT38_19040 PF05103 DivIVA protein LIT38_19045 PF06908 YspA SLOG family LIT38_19060 PF13482 RNase_H superfamily LIT38_19065 PF00270 DEAD/DEAH box helicase LIT38_19065 PF09369 Domain of unknown function (DUF1998) LIT38_19065 PF00271 Helicase conserved C-terminal domain LIT38_19080 PF00027 Cyclic nucleotide-binding domain LIT38_19080 PF13545 Crp-like helix-turn-helix domain LIT38_19085 PF00011 Hsp20/alpha crystallin family LIT38_19090 PF12911 N-terminal TM domain of oligopeptide transport permease C LIT38_19090 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_19095 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_19100 PF14179 YppG-like protein LIT38_19120 PF10720 Protein of unknown function (DUF2515) LIT38_19125 PF03838 Recombination protein U LIT38_19130 PF00912 Transglycosylase LIT38_19130 PF00905 Penicillin binding protein transpeptidase domain LIT38_19140 PF00633 Helix-hairpin-helix motif LIT38_19140 PF10576 Iron-sulfur binding domain of endonuclease III LIT38_19140 PF00730 HhH-GPD superfamily base excision DNA repair protein LIT38_19145 PF07261 Replication initiation and membrane attachment LIT38_19150 PF01336 OB-fold nucleic acid binding domain LIT38_19150 PF00152 tRNA synthetases class II (D, K and N) LIT38_19155 PF00155 Aminotransferase class I and II LIT38_19165 PF14084 Protein of unknown function (DUF4264) LIT38_19175 PF13307 Helicase C-terminal domain LIT38_19175 PF04851 Type III restriction enzyme, res subunit LIT38_19175 PF00929 Exonuclease LIT38_19180 PF02261 Aspartate decarboxylase LIT38_19185 PF02569 Pantoate-beta-alanine ligase LIT38_19190 PF02548 Ketopantoate hydroxymethyltransferase LIT38_19195 PF08279 HTH domain LIT38_19195 PF03099 Biotin/lipoate A/B protein ligase family LIT38_19195 PF02237 Biotin protein ligase C terminal domain LIT38_19200 PF13735 tRNA nucleotidyltransferase domain 2 putative LIT38_19200 PF01743 Poly A polymerase head domain LIT38_19200 PF12627 Probable RNA and SrmB- binding site of polymerase A LIT38_19205 PF13439 Glycosyltransferase Family 4 LIT38_19205 PF00534 Glycosyl transferases group 1 LIT38_19210 PF02585 GlcNAc-PI de-N-acetylase LIT38_19215 PF02142 MGS-like domain LIT38_19220 PF05173 Dihydrodipicolinate reductase, C-terminus LIT38_19220 PF01113 Dihydrodipicolinate reductase, N-terminus LIT38_19225 PF03819 MazG nucleotide pyrophosphohydrolase domain LIT38_19230 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LIT38_19230 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LIT38_19235 PF04298 Putative neutral zinc metallopeptidase LIT38_19240 PF09577 Sporulation protein YpjB (SpoYpjB) LIT38_19245 PF07187 Protein of unknown function (DUF1405) LIT38_19250 PF00032 Cytochrome b(C-terminal)/b6/petD LIT38_19250 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LIT38_19255 PF00033 Cytochrome b/b6/petB LIT38_19260 PF00355 Rieske [2Fe-2S] domain LIT38_19265 PF10673 Protein of unknown function (DUF2487) LIT38_19270 PF08864 UPF0302 domain LIT38_19270 PF08858 IDEAL domain LIT38_19285 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LIT38_19290 PF01842 ACT domain LIT38_19290 PF02153 Prephenate dehydrogenase LIT38_19295 PF00155 Aminotransferase class I and II LIT38_19300 PF07736 Chorismate mutase type I LIT38_19305 PF01761 3-dehydroquinate synthase LIT38_19310 PF01264 Chorismate synthase LIT38_19315 PF01739 CheR methyltransferase, SAM binding domain LIT38_19315 PF03705 CheR methyltransferase, all-alpha domain LIT38_19320 PF00334 Nucleoside diphosphate kinase LIT38_19325 PF00348 Polyprenyl synthetase LIT38_19330 PF01209 ubiE/COQ5 methyltransferase family LIT38_19335 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 LIT38_19340 PF02081 Tryptophan RNA-binding attenuator protein LIT38_19345 PF01227 GTP cyclohydrolase I LIT38_19350 PF00216 Bacterial DNA-binding protein LIT38_19355 PF09547 Stage IV sporulation protein A (spore_IV_A) LIT38_19365 PF10966 Protein of unknown function (DUF2768) LIT38_19370 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus LIT38_19370 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus LIT38_19375 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal LIT38_19375 PF01926 50S ribosome-binding GTPase LIT38_19385 PF14045 YIEGIA protein LIT38_19395 PF14140 YpzI-like protein LIT38_19400 PF01070 FMN-dependent dehydrogenase LIT38_19405 PF00575 S1 RNA binding domain LIT38_19410 PF01553 Acyltransferase LIT38_19415 PF02224 Cytidylate kinase LIT38_19420 PF17313 Family of unknown function (DUF5359) LIT38_19430 PF03413 Peptidase propeptide and YPEB domain LIT38_19430 PF14620 YpeB sporulation LIT38_19435 PF01471 Putative peptidoglycan binding domain LIT38_19435 PF07486 Cell Wall Hydrolase LIT38_19440 PF13367 PrsW family intramembrane metalloprotease LIT38_19445 PF00710 Asparaginase, N-terminal LIT38_19445 PF17763 Glutaminase/Asparaginase C-terminal domain LIT38_19455 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LIT38_19455 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LIT38_19460 PF05389 Negative regulator of genetic competence (MecA) LIT38_19465 PF02310 B12 binding domain LIT38_19465 PF02607 B12 binding domain LIT38_19465 PF13411 MerR HTH family regulatory protein LIT38_19470 PF00149 Calcineurin-like phosphoesterase LIT38_19485 PF11007 Spore coat associated protein JA (CotJA) LIT38_19490 PF12652 CotJB protein LIT38_19495 PF05067 Manganese containing catalase LIT38_19500 PF10864 Protein of unknown function (DUF2663) LIT38_19510 PF02517 CPBP intramembrane metalloprotease LIT38_19515 PF00271 Helicase conserved C-terminal domain LIT38_19515 PF00270 DEAD/DEAH box helicase LIT38_19520 PF14493 Helix-turn-helix domain LIT38_19530 PF12822 ECF transporter, substrate-specific component LIT38_19535 PF02811 PHP domain LIT38_19540 PF01551 Peptidase family M23 LIT38_19540 PF10145 Phage-related minor tail protein LIT38_19540 PF01464 Transglycosylase SLT domain LIT38_19550 PF04542 Sigma-70 region 2 LIT38_19550 PF08281 Sigma-70, region 4 LIT38_19555 PF18698 Histidine kinase sensor domain LIT38_19555 PF00512 His Kinase A (phospho-acceptor) domain LIT38_19555 PF00989 PAS fold LIT38_19555 PF00672 HAMP domain LIT38_19555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_19560 PF00486 Transcriptional regulatory protein, C terminal LIT38_19560 PF00072 Response regulator receiver domain LIT38_19565 PF01578 Cytochrome C assembly protein LIT38_19570 PF05140 ResB-like family LIT38_19575 PF00578 AhpC/TSA family LIT38_19580 PF00849 RNA pseudouridylate synthase LIT38_19580 PF01479 S4 domain LIT38_19585 PF07670 Nucleoside recognition LIT38_19590 PF07670 Nucleoside recognition LIT38_19595 PF07943 Penicillin-binding protein 5, C-terminal domain LIT38_19595 PF00768 D-alanyl-D-alanine carboxypeptidase LIT38_19600 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LIT38_19600 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LIT38_19605 PF13047 Protein of unknown function (DUF3907) LIT38_19615 PF04079 Segregation and condensation complex subunit ScpB LIT38_19620 PF02616 Segregation and condensation protein ScpA LIT38_19630 PF03745 Domain of unknown function (DUF309) LIT38_19635 PF00583 Acetyltransferase (GNAT) family LIT38_19640 PF06207 Protein of unknown function (DUF1002) LIT38_19645 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain LIT38_19645 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain LIT38_19650 PF03323 Bacillus/Clostridium GerA spore germination protein LIT38_19655 PF14097 Stage V sporulation protein AE1 LIT38_19660 PF13782 Stage V sporulation protein AB LIT38_19665 PF12164 Stage V sporulation protein AA LIT38_19670 PF04545 Sigma-70, region 4 LIT38_19670 PF04542 Sigma-70 region 2 LIT38_19670 PF04539 Sigma-70 region 3 LIT38_19675 PF13581 Histidine kinase-like ATPase domain LIT38_19680 PF01740 STAS domain LIT38_19685 PF07943 Penicillin-binding protein 5, C-terminal domain LIT38_19685 PF00768 D-alanyl-D-alanine carboxypeptidase LIT38_19690 PF02885 Glycosyl transferase family, helical bundle domain LIT38_19690 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain LIT38_19690 PF00591 Glycosyl transferase family, a/b domain LIT38_19695 PF01048 Phosphorylase superfamily LIT38_19700 PF01676 Metalloenzyme superfamily LIT38_19705 PF02899 Phage integrase, N-terminal SAM-like domain LIT38_19705 PF00589 Phage integrase family LIT38_19710 PF14004 Protein of unknown function (DUF4227) LIT38_19715 PF01475 Ferric uptake regulator family LIT38_19720 PF01944 Stage II sporulation protein M LIT38_19735 PF00293 NUDIX domain LIT38_19740 PF13072 Mother cell inhibitor of FtsZ LIT38_19745 PF00248 Aldo/keto reductase family LIT38_19760 PF01144 Coenzyme A transferase LIT38_19765 PF01144 Coenzyme A transferase LIT38_19770 PF02803 Thiolase, C-terminal domain LIT38_19770 PF00108 Thiolase, N-terminal domain LIT38_19775 PF00682 HMGL-like LIT38_19785 PF12146 Serine aminopeptidase, S33 LIT38_19795 PF01521 Iron-sulphur cluster biosynthesis LIT38_19810 PF08863 YolD-like protein LIT38_19815 PF00817 impB/mucB/samB family LIT38_19815 PF11799 impB/mucB/samB family C-terminal domain LIT38_19815 PF11798 IMS family HHH motif LIT38_19825 PF00106 short chain dehydrogenase LIT38_19830 PF00753 Metallo-beta-lactamase superfamily LIT38_19835 PF14748 Pyrroline-5-carboxylate reductase dimerisation LIT38_19835 PF03807 NADP oxidoreductase coenzyme F420-dependent LIT38_19845 PF00724 NADH:flavin oxidoreductase / NADH oxidase family LIT38_19850 PF00209 Sodium:neurotransmitter symporter family LIT38_19860 PF00753 Metallo-beta-lactamase superfamily LIT38_19860 PF12706 Beta-lactamase superfamily domain LIT38_19865 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain LIT38_19865 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain LIT38_19870 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain LIT38_19870 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase LIT38_19875 PF00817 impB/mucB/samB family LIT38_19875 PF11799 impB/mucB/samB family C-terminal domain LIT38_19875 PF11798 IMS family HHH motif LIT38_19880 PF01584 CheW-like domain LIT38_19880 PF00072 Response regulator receiver domain LIT38_19885 PF07687 Peptidase dimerisation domain LIT38_19885 PF01546 Peptidase family M20/M25/M40 LIT38_19890 PF01039 Carboxyl transferase domain LIT38_19905 PF03734 L,D-transpeptidase catalytic domain LIT38_19910 PF11728 Putative aromatic acid exporter C-terminal domain LIT38_19910 PF06081 Aromatic acid exporter family member 1 LIT38_19915 PF00005 ABC transporter LIT38_19920 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_19925 PF00497 Bacterial extracellular solute-binding proteins, family 3 LIT38_19930 PF06491 Disulphide isomerase LIT38_19940 PF02310 B12 binding domain LIT38_19940 PF01642 Methylmalonyl-CoA mutase LIT38_19945 PF01642 Methylmalonyl-CoA mutase LIT38_19950 PF00364 Biotin-requiring enzyme LIT38_19950 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) LIT38_19950 PF02817 e3 binding domain LIT38_19955 PF02779 Transketolase, pyrimidine binding domain LIT38_19955 PF02780 Transketolase, C-terminal domain LIT38_19960 PF00676 Dehydrogenase E1 component LIT38_19965 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain LIT38_19965 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIT38_19970 PF00871 Acetokinase family LIT38_19975 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LIT38_19975 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LIT38_19980 PF01515 Phosphate acetyl/butaryl transferase LIT38_19985 PF00989 PAS fold LIT38_19985 PF00158 Sigma-54 interaction domain LIT38_19985 PF02954 Bacterial regulatory protein, Fis family LIT38_19990 PF11118 Protein of unknown function (DUF2627) LIT38_19995 PF14174 YycC-like protein LIT38_20000 PF00072 Response regulator receiver domain LIT38_20000 PF08769 Sporulation initiation factor Spo0A C terminal LIT38_20005 PF17820 PDZ domain LIT38_20005 PF05580 SpoIVB peptidase S55 LIT38_20010 PF13476 AAA domain LIT38_20015 PF02863 Arginine repressor, C-terminal domain LIT38_20015 PF01316 Arginine repressor, DNA binding domain LIT38_20020 PF01479 S4 domain LIT38_20020 PF01728 FtsJ-like methyltransferase LIT38_20025 PF02779 Transketolase, pyrimidine binding domain LIT38_20025 PF02780 Transketolase, C-terminal domain LIT38_20025 PF13292 1-deoxy-D-xylulose-5-phosphate synthase LIT38_20030 PF00348 Polyprenyl synthetase LIT38_20035 PF02609 Exonuclease VII small subunit LIT38_20040 PF02601 Exonuclease VII, large subunit LIT38_20040 PF13742 OB-fold nucleic acid binding domain LIT38_20045 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain LIT38_20045 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain LIT38_20050 PF01029 NusB family LIT38_20055 PF03780 Asp23 family, cell envelope-related function LIT38_20060 PF02785 Biotin carboxylase C-terminal domain LIT38_20060 PF00289 Biotin carboxylase, N-terminal domain LIT38_20060 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain LIT38_20065 PF00364 Biotin-requiring enzyme LIT38_20070 PF12685 SpoIIIAH-like protein LIT38_20080 PF09581 Stage III sporulation protein AF (Spore_III_AF) LIT38_20085 PF09546 Stage III sporulation protein AE (spore_III_AE) LIT38_20090 PF06686 Stage III sporulation protein AC/AD protein family LIT38_20095 PF06686 Stage III sporulation protein AC/AD protein family LIT38_20100 PF09548 Stage III sporulation protein AB (spore_III_AB) LIT38_20110 PF00245 Alkaline phosphatase LIT38_20125 PF09285 Elongation factor P, C-terminal LIT38_20125 PF01132 Elongation factor P (EF-P) OB domain LIT38_20125 PF08207 Elongation factor P (EF-P) KOW-like domain LIT38_20130 PF01321 Creatinase/Prolidase N-terminal domain LIT38_20130 PF00557 Metallopeptidase family M24 LIT38_20135 PF01220 Dehydroquinase class II LIT38_20140 PF11085 Conserved membrane protein YqhR LIT38_20150 PF01734 Patatin-like phospholipase LIT38_20160 PF03477 ATP cone domain LIT38_20160 PF02867 Ribonucleotide reductase, barrel domain LIT38_20160 PF00317 Ribonucleotide reductase, all-alpha domain LIT38_20165 PF03099 Biotin/lipoate A/B protein ligase family LIT38_20170 PF00581 Rhodanese-like domain LIT38_20175 PF02347 Glycine cleavage system P-protein LIT38_20180 PF02347 Glycine cleavage system P-protein LIT38_20185 PF08669 Glycine cleavage T-protein C-terminal barrel domain LIT38_20185 PF01571 Aminomethyltransferase folate-binding domain LIT38_20190 PF00176 SNF2 family N-terminal domain LIT38_20190 PF00271 Helicase conserved C-terminal domain LIT38_20195 PF11079 Bacterial protein YqhG of unknown function LIT38_20200 PF14038 YqzE-like protein LIT38_20205 PF01202 Shikimate kinase LIT38_20230 PF07963 Prokaryotic N-terminal methylation motif LIT38_20235 PF00482 Type II secretion system (T2SS), protein F LIT38_20310 PF01520 N-acetylmuramoyl-L-alanine amidase LIT38_20310 PF05036 Sporulation related domain LIT38_20320 PF10779 Haemolysin XhlA LIT38_20355 PF01464 Transglycosylase SLT domain LIT38_20400 PF00574 Clp protease LIT38_20440 PF02463 RecF/RecN/SMC N terminal domain LIT38_20445 PF00589 Phage integrase family LIT38_20455 PF02498 BRO family, N-terminal domain LIT38_20455 PF10548 P22AR C-terminal domain LIT38_20460 PF00436 Single-strand binding protein family LIT38_20480 PF17356 Phage-like element PBSX protein XtrA LIT38_20520 PF00239 Resolvase, N terminal domain LIT38_20520 PF02796 Helix-turn-helix domain of resolvase LIT38_20525 PF00437 Type II/IV secretion system protein LIT38_20535 PF03960 ArsC family LIT38_20545 PF11117 Protein of unknown function (DUF2626) LIT38_20555 PF00753 Metallo-beta-lactamase superfamily LIT38_20565 PF10958 Protein of unknown function (DUF2759) LIT38_20570 PF01910 Thiamine-binding protein LIT38_20580 PF01476 LysM domain LIT38_20580 PF00246 Zinc carboxypeptidase LIT38_20585 PF00480 ROK family LIT38_20595 PF03323 Bacillus/Clostridium GerA spore germination protein LIT38_20600 PF01694 Rhomboid family LIT38_20610 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LIT38_20610 PF00056 lactate/malate dehydrogenase, NAD binding domain LIT38_20620 PF01812 5-formyltetrahydrofolate cyclo-ligase family LIT38_20625 PF00471 Ribosomal protein L33 LIT38_20635 PF00534 Glycosyl transferases group 1 LIT38_20635 PF13439 Glycosyltransferase Family 4 LIT38_20655 PF01895 PhoU domain LIT38_20660 PF00005 ABC transporter LIT38_20665 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_20670 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_20675 PF12849 PBP superfamily domain LIT38_20680 PF03717 Penicillin-binding Protein dimerisation domain LIT38_20680 PF00905 Penicillin binding protein transpeptidase domain LIT38_20685 PF07690 Major Facilitator Superfamily LIT38_20690 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain LIT38_20690 PF02777 Iron/manganese superoxide dismutases, C-terminal domain LIT38_20695 PF04306 Protein of unknown function (DUF456) LIT38_20700 PF02690 Na+/Pi-cotransporter LIT38_20705 PF06691 Protein of unknown function (DUF1189) LIT38_20715 PF04551 GcpE protein LIT38_20730 PF01475 Ferric uptake regulator family LIT38_20735 PF00950 ABC 3 transport family LIT38_20740 PF00005 ABC transporter LIT38_20745 PF11116 Protein of unknown function (DUF2624) LIT38_20750 PF01261 Xylose isomerase-like TIM barrel LIT38_20755 PF00271 Helicase conserved C-terminal domain LIT38_20755 PF00270 DEAD/DEAH box helicase LIT38_20765 PF02401 LytB protein LIT38_20770 PF01784 NIF3 (NGG1p interacting factor 3) LIT38_20775 PF04816 tRNA (adenine(22)-N(1))-methyltransferase LIT38_20780 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LIT38_20785 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIT38_20785 PF02770 Acyl-CoA dehydrogenase, middle domain LIT38_20785 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIT38_20790 PF03979 Sigma-70 factor, region 1.1 LIT38_20790 PF00140 Sigma-70 factor, region 1.2 LIT38_20790 PF04542 Sigma-70 region 2 LIT38_20790 PF04539 Sigma-70 region 3 LIT38_20790 PF04545 Sigma-70, region 4 LIT38_20795 PF10410 DnaB-helicase binding domain of primase LIT38_20795 PF08275 DNA primase catalytic core, N-terminal domain LIT38_20795 PF01807 CHC2 zinc finger LIT38_20800 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 LIT38_20805 PF03618 Kinase/pyrophosphorylase LIT38_20810 PF08279 HTH domain LIT38_20810 PF00571 CBS domain LIT38_20815 PF02092 Glycyl-tRNA synthetase beta subunit LIT38_20820 PF02091 Glycyl-tRNA synthetase alpha subunit LIT38_20825 PF02565 Recombination protein O C terminal LIT38_20825 PF11967 Recombination protein O N terminal LIT38_20830 PF14006 YqzL-like protein LIT38_20835 PF07650 KH domain LIT38_20835 PF01926 50S ribosome-binding GTPase LIT38_20840 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LIT38_20850 PF01219 Prokaryotic diacylglycerol kinase LIT38_20855 PF02130 Uncharacterized protein family UPF0054 LIT38_20860 PF07697 7TM-HD extracellular LIT38_20860 PF07698 7TM receptor with intracellular HD hydrolase LIT38_20860 PF01966 HD domain LIT38_20865 PF02562 PhoH-like protein LIT38_20870 PF06898 Putative stage IV sporulation protein YqfD LIT38_20875 PF07873 YabP family LIT38_20885 PF12127 SigmaW regulon antibacterial LIT38_20890 PF01957 NfeD-like C-terminal, partner-binding LIT38_20890 PF01972 Serine dehydrogenase proteinase LIT38_20895 PF09424 Yqey-like protein LIT38_20900 PF01165 Ribosomal protein S21 LIT38_20905 PF02690 Na+/Pi-cotransporter LIT38_20910 PF01791 DeoC/LacD family aldolase LIT38_20915 PF01938 TRAM domain LIT38_20915 PF00919 Uncharacterized protein family UPF0004 LIT38_20915 PF04055 Radical SAM superfamily LIT38_20920 PF04452 RNA methyltransferase LIT38_20930 PF00226 DnaJ domain LIT38_20930 PF01556 DnaJ C terminal domain LIT38_20930 PF00684 DnaJ central domain LIT38_20935 PF00012 Hsp70 protein LIT38_20940 PF01025 GrpE LIT38_20945 PF01628 HrcA protein C terminal domain LIT38_20950 PF06969 HemN C-terminal domain LIT38_20950 PF04055 Radical SAM superfamily LIT38_20955 PF06421 GTP-binding protein LepA C-terminus LIT38_20955 PF03144 Elongation factor Tu domain 2 LIT38_20955 PF00679 Elongation factor G C-terminus LIT38_20955 PF00009 Elongation factor Tu GTP binding domain LIT38_20960 PF12438 Protein of unknown function (DUF3679) LIT38_20965 PF07454 Stage II sporulation protein P (SpoIIP) LIT38_20970 PF03418 Germination protease LIT38_20975 PF01649 Ribosomal protein S20 LIT38_20980 PF06144 DNA polymerase III, delta subunit LIT38_20985 PF14141 YqzM-like protein LIT38_20990 PF13567 Domain of unknown function (DUF4131) LIT38_20990 PF00753 Metallo-beta-lactamase superfamily LIT38_20990 PF03772 Competence protein LIT38_20995 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region LIT38_21000 PF10531 SLBB domain LIT38_21005 PF03807 NADP oxidoreductase coenzyme F420-dependent LIT38_21005 PF14748 Pyrroline-5-carboxylate reductase dimerisation LIT38_21010 PF13649 Methyltransferase domain LIT38_21020 PF01966 HD domain LIT38_21025 PF01467 Cytidylyltransferase-like LIT38_21030 PF01985 CRS1 / YhbY (CRM) domain LIT38_21035 PF18317 Shikimate 5'-dehydrogenase C-terminal domain LIT38_21035 PF01488 Shikimate / quinate 5-dehydrogenase LIT38_21035 PF08501 Shikimate dehydrogenase substrate binding domain LIT38_21040 PF01926 50S ribosome-binding GTPase LIT38_21050 PF08970 Sporulation inhibitor A LIT38_21055 PF02666 Phosphatidylserine decarboxylase LIT38_21065 PF01066 CDP-alcohol phosphatidyltransferase LIT38_21090 PF04542 Sigma-70 region 2 LIT38_21090 PF04545 Sigma-70, region 4 LIT38_21095 PF09501 Probable sporulation protein (Bac_small_yrzI) LIT38_21105 PF01048 Phosphorylase superfamily LIT38_21110 PF10750 Protein of unknown function (DUF2536) LIT38_21120 PF03717 Penicillin-binding Protein dimerisation domain LIT38_21120 PF00905 Penicillin binding protein transpeptidase domain LIT38_21125 PF03449 Transcription elongation factor, N-terminal LIT38_21125 PF01272 Transcription elongation factor, GreA/GreB, C-term LIT38_21130 PF00485 Phosphoribulokinase / Uridine kinase family LIT38_21135 PF16325 Peptidase family U32 C-terminal domain LIT38_21135 PF01136 Peptidase family U32 LIT38_21140 PF01136 Peptidase family U32 LIT38_21145 PF01596 O-methyltransferase LIT38_21150 PF02618 YceG-like family LIT38_21155 PF06949 Protein of unknown function (DUF1292) LIT38_21160 PF03652 Holliday junction resolvase LIT38_21165 PF06135 IreB regulatory phosphoprotein LIT38_21175 PF02272 DHHA1 domain LIT38_21175 PF01411 tRNA synthetases class II (A) LIT38_21175 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LIT38_21180 PF01594 AI-2E family transporter LIT38_21195 PF05239 PRC-barrel domain LIT38_21210 PF14490 Helix-hairpin-helix containing domain LIT38_21210 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain LIT38_21210 PF13538 UvrD-like helicase C-terminal domain LIT38_21225 PF00266 Aminotransferase class-V LIT38_21230 PF02082 Transcriptional regulator LIT38_21240 PF05496 Holliday junction DNA helicase RuvB P-loop domain LIT38_21240 PF16193 AAA C-terminal domain LIT38_21240 PF12002 MgsA AAA+ ATPase C terminal LIT38_21245 PF12679 ABC-2 family transporter protein LIT38_21250 PF00005 ABC transporter LIT38_21260 PF00899 ThiF family LIT38_21270 PF02938 GAD domain LIT38_21270 PF00152 tRNA synthetases class II (D, K and N) LIT38_21270 PF01336 OB-fold nucleic acid binding domain LIT38_21275 PF03129 Anticodon binding domain LIT38_21275 PF13393 Histidyl-tRNA synthetase LIT38_21285 PF08239 Bacterial SH3 domain LIT38_21285 PF01520 N-acetylmuramoyl-L-alanine amidase LIT38_21290 PF02580 D-Tyr-tRNA(Tyr) deacylase LIT38_21295 PF13291 ACT domain LIT38_21295 PF04607 Region found in RelA / SpoT proteins LIT38_21295 PF02824 TGS domain LIT38_21300 PF00156 Phosphoribosyl transferase domain LIT38_21305 PF10141 Single-strand DNA-specific exonuclease, C terminal domain LIT38_21305 PF17768 RecJ OB domain LIT38_21305 PF02272 DHHA1 domain LIT38_21305 PF01368 DHH family LIT38_21310 PF06305 Lipopolysaccharide assembly protein A domain LIT38_21315 PF01545 Cation efflux family LIT38_21315 PF16916 Dimerisation domain of Zinc Transporter LIT38_21320 PF07549 SecD/SecF GG Motif LIT38_21320 PF02355 Protein export membrane protein LIT38_21330 PF01943 Polysaccharide biosynthesis protein LIT38_21330 PF14667 Polysaccharide biosynthesis C-terminal domain LIT38_21335 PF04239 Protein of unknown function (DUF421) LIT38_21340 PF12670 Protein of unknown function (DUF3792) LIT38_21345 PF02699 Preprotein translocase subunit LIT38_21350 PF01702 Queuine tRNA-ribosyltransferase LIT38_21355 PF02547 Queuosine biosynthesis protein LIT38_21360 PF11146 Protein of unknown function (DUF2905) LIT38_21365 PF05496 Holliday junction DNA helicase RuvB P-loop domain LIT38_21365 PF17864 RuvB AAA lid domain LIT38_21365 PF05491 RuvB C-terminal winged helix domain LIT38_21370 PF07499 RuvA, C-terminal domain LIT38_21370 PF01330 RuvA N terminal domain LIT38_21375 PF00589 Phage integrase family LIT38_21380 PF08955 BofC C-terminal domain LIT38_21380 PF08977 Bypass of Forespore C, N terminal LIT38_21405 PF02445 Quinolinate synthetase A protein LIT38_21410 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LIT38_21410 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain LIT38_21415 PF00890 FAD binding domain LIT38_21415 PF02910 Fumarate reductase flavoprotein C-term LIT38_21420 PF00266 Aminotransferase class-V LIT38_21425 PF02829 3H domain LIT38_21425 PF08279 HTH domain LIT38_21430 PF01842 ACT domain LIT38_21430 PF00800 Prephenate dehydratase LIT38_21435 PF01842 ACT domain LIT38_21440 PF01018 GTP1/OBG LIT38_21440 PF09269 Domain of unknown function (DUF1967) LIT38_21440 PF01926 50S ribosome-binding GTPase LIT38_21445 PF14682 Sporulation initiation phospho-transferase B, C-terminal LIT38_21445 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LIT38_21450 PF01016 Ribosomal L27 protein LIT38_21455 PF04327 Cysteine protease Prp LIT38_21460 PF00829 Ribosomal prokaryotic L21 protein LIT38_21465 PF00575 S1 RNA binding domain LIT38_21465 PF10150 Ribonuclease E/G family LIT38_21470 PF02163 Peptidase family M50 LIT38_21475 PF01551 Peptidase family M23 LIT38_21480 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain LIT38_21485 PF03775 Septum formation inhibitor MinC, C-terminal domain LIT38_21495 PF04085 rod shape-determining protein MreC LIT38_21510 PF02545 Maf-like protein LIT38_21520 PF06750 Bacterial Peptidase A24 N-terminal domain LIT38_21520 PF01478 Type IV leader peptidase family LIT38_21525 PF00990 Diguanylate cyclase, GGDEF domain LIT38_21525 PF00072 Response regulator receiver domain LIT38_21530 PF02875 Mur ligase family, glutamate ligase domain LIT38_21530 PF08245 Mur ligase middle domain LIT38_21535 PF00133 tRNA synthetases class I (I, L, M and V) LIT38_21535 PF10458 Valyl tRNA synthetase tRNA binding arm LIT38_21535 PF08264 Anticodon-binding domain of tRNA LIT38_21550 PF01476 LysM domain LIT38_21550 PF01476 LysM domain LIT38_21555 PF00202 Aminotransferase class-III LIT38_21560 PF00490 Delta-aminolevulinic acid dehydratase LIT38_21570 PF03900 Porphobilinogen deaminase, C-terminal domain LIT38_21570 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain LIT38_21575 PF01578 Cytochrome C assembly protein LIT38_21580 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain LIT38_21580 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain LIT38_21580 PF01488 Shikimate / quinate 5-dehydrogenase LIT38_21590 PF00005 ABC transporter LIT38_21595 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_21600 PF00497 Bacterial extracellular solute-binding proteins, family 3 LIT38_21610 PF01926 50S ribosome-binding GTPase LIT38_21615 PF00004 ATPase family associated with various cellular activities (AAA) LIT38_21615 PF02190 ATP-dependent protease La (LON) substrate-binding domain LIT38_21615 PF05362 Lon protease (S16) C-terminal proteolytic domain LIT38_21620 PF00004 ATPase family associated with various cellular activities (AAA) LIT38_21620 PF05362 Lon protease (S16) C-terminal proteolytic domain LIT38_21625 PF10431 C-terminal, D2-small domain, of ClpB protein LIT38_21625 PF06689 ClpX C4-type zinc finger LIT38_21625 PF07724 AAA domain (Cdc48 subfamily) LIT38_21630 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase LIT38_21630 PF05698 Bacterial trigger factor protein (TF) C-terminus LIT38_21630 PF05697 Bacterial trigger factor protein (TF) LIT38_21640 PF00694 Aconitase C-terminal domain LIT38_21645 PF00330 Aconitase family (aconitate hydratase) LIT38_21650 PF00180 Isocitrate/isopropylmalate dehydrogenase LIT38_21655 PF00682 HMGL-like LIT38_21655 PF08502 LeuA allosteric (dimerisation) domain LIT38_21660 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain LIT38_21660 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain LIT38_21665 PF10369 Small subunit of acetolactate synthase LIT38_21665 PF01842 ACT domain LIT38_21670 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LIT38_21670 PF00205 Thiamine pyrophosphate enzyme, central domain LIT38_21670 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LIT38_21680 PF12850 Calcineurin-like phosphoesterase superfamily domain LIT38_21685 PF01725 Ham1 family LIT38_21690 PF01138 3' exoribonuclease family, domain 1 LIT38_21690 PF03725 3' exoribonuclease family, domain 2 LIT38_21695 PF10646 Sporulation and spore germination LIT38_21700 PF16124 RecQ zinc-binding LIT38_21700 PF00270 DEAD/DEAH box helicase LIT38_21700 PF00570 HRDC domain LIT38_21700 PF00271 Helicase conserved C-terminal domain LIT38_21700 PF09382 RQC domain LIT38_21705 PF01177 Asp/Glu/Hydantoin racemase LIT38_21710 PF01047 MarR family LIT38_21715 PF00196 Bacterial regulatory proteins, luxR family LIT38_21720 PF03061 Thioesterase superfamily LIT38_21725 PF13085 2Fe-2S iron-sulfur cluster binding domain LIT38_21725 PF13183 4Fe-4S dicluster domain LIT38_21730 PF00890 FAD binding domain LIT38_21730 PF02910 Fumarate reductase flavoprotein C-term LIT38_21735 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit LIT38_21740 PF10702 Protein of unknown function (DUF2507) LIT38_21745 PF13840 ACT domain LIT38_21745 PF00696 Amino acid kinase family LIT38_21750 PF01541 GIY-YIG catalytic domain LIT38_21750 PF08459 UvrC Helix-hairpin-helix N-terminal LIT38_21750 PF02151 UvrB/uvrC motif LIT38_21755 PF00085 Thioredoxin LIT38_21760 PF01012 Electron transfer flavoprotein domain LIT38_21760 PF00766 Electron transfer flavoprotein FAD-binding domain LIT38_21765 PF01012 Electron transfer flavoprotein domain LIT38_21770 PF00378 Enoyl-CoA hydratase/isomerase LIT38_21775 PF08359 YsiA-like protein, C-terminal region LIT38_21775 PF00440 Bacterial regulatory proteins, tetR family LIT38_21780 PF00501 AMP-binding enzyme LIT38_21780 PF13193 AMP-binding enzyme C-terminal domain LIT38_21785 PF03994 Domain of Unknown Function (DUF350) LIT38_21790 PF01713 Smr domain LIT38_21790 PF00488 MutS domain V LIT38_21795 PF14791 DNA polymerase beta thumb LIT38_21795 PF02811 PHP domain LIT38_21795 PF14716 Helix-hairpin-helix domain LIT38_21800 PF02674 Colicin V production protein LIT38_21805 PF05164 Cell division protein ZapA LIT38_21810 PF11858 Domain of unknown function (DUF3378) LIT38_21810 PF01351 Ribonuclease HII LIT38_21815 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain LIT38_21815 PF01588 Putative tRNA binding domain LIT38_21815 PF03147 Ferredoxin-fold anticodon binding domain LIT38_21815 PF03484 tRNA synthetase B5 domain LIT38_21815 PF03483 B3/4 domain LIT38_21820 PF01409 tRNA synthetases class II core domain (F) LIT38_21820 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain LIT38_21830 PF00588 SpoU rRNA Methylase family LIT38_21830 PF08032 RNA 2'-O ribose methyltransferase substrate binding LIT38_21835 PF14098 Small, acid-soluble spore protein I LIT38_21840 PF05343 M42 glutamyl aminopeptidase LIT38_21860 PF06961 Protein of unknown function (DUF1294) LIT38_21865 PF00453 Ribosomal protein L20 LIT38_21870 PF01632 Ribosomal protein L35 LIT38_21875 PF00707 Translation initiation factor IF-3, C-terminal domain LIT38_21875 PF05198 Translation initiation factor IF-3, N-terminal domain LIT38_21880 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain LIT38_21880 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) LIT38_21880 PF02824 TGS domain LIT38_21880 PF03129 Anticodon binding domain LIT38_21885 PF08812 YtxC-like family LIT38_21890 PF01695 IstB-like ATP binding protein LIT38_21890 PF07319 Primosomal protein DnaI N-terminus LIT38_21895 PF07261 Replication initiation and membrane attachment LIT38_21900 PF03477 ATP cone domain LIT38_21910 PF02675 S-adenosylmethionine decarboxylase LIT38_21915 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LIT38_21915 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LIT38_21920 PF01121 Dephospho-CoA kinase LIT38_21925 PF02659 Putative manganese efflux pump LIT38_21930 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain LIT38_21930 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain LIT38_21930 PF06827 Zinc finger found in FPG and IleRS LIT38_21935 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain LIT38_21935 PF01367 5'-3' exonuclease, C-terminal SAM fold LIT38_21935 PF00476 DNA polymerase family A LIT38_21940 PF01145 SPFH domain / Band 7 family LIT38_21945 PF01145 SPFH domain / Band 7 family LIT38_21945 PF12221 Bacterial membrane protein N terminal LIT38_21950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_21950 PF00512 His Kinase A (phospho-acceptor) domain LIT38_21950 PF00989 PAS fold LIT38_21950 PF16736 Single Cache-like LIT38_21955 PF00486 Transcriptional regulatory protein, C terminal LIT38_21955 PF00072 Response regulator receiver domain LIT38_21965 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LIT38_21965 PF00056 lactate/malate dehydrogenase, NAD binding domain LIT38_21970 PF00180 Isocitrate/isopropylmalate dehydrogenase LIT38_21975 PF00285 Citrate synthase, C-terminal domain LIT38_21980 PF04284 Protein of unknown function (DUF441) LIT38_21985 PF01594 AI-2E family transporter LIT38_21995 PF00391 PEP-utilising enzyme, mobile domain LIT38_21995 PF00224 Pyruvate kinase, barrel domain LIT38_21995 PF02887 Pyruvate kinase, alpha/beta domain LIT38_22000 PF00365 Phosphofructokinase LIT38_22005 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit LIT38_22010 PF01039 Carboxyl transferase domain LIT38_22010 PF17848 Acetyl-coA carboxylase zinc finger domain LIT38_22015 PF00392 Bacterial regulatory proteins, gntR family LIT38_22015 PF07729 FCD domain LIT38_22020 PF00390 Malic enzyme, N-terminal domain LIT38_22020 PF03949 Malic enzyme, NAD binding domain LIT38_22025 PF07733 Bacterial DNA polymerase III alpha NTPase domain LIT38_22025 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LIT38_22025 PF14579 Helix-hairpin-helix motif LIT38_22025 PF02811 PHP domain LIT38_22025 PF01336 OB-fold nucleic acid binding domain LIT38_22030 PF14034 Sporulation protein YtrH LIT38_22040 PF01368 DHH family LIT38_22040 PF02272 DHHA1 domain LIT38_22050 PF03061 Thioesterase superfamily LIT38_22050 PF00571 CBS domain LIT38_22050 PF07085 DRTGG domain LIT38_22050 PF00392 Bacterial regulatory proteins, gntR family LIT38_22065 PF01321 Creatinase/Prolidase N-terminal domain LIT38_22065 PF00557 Metallopeptidase family M24 LIT38_22070 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LIT38_22070 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LIT38_22080 PF00582 Universal stress protein family LIT38_22085 PF14698 Argininosuccinate lyase C-terminal LIT38_22085 PF00206 Lyase LIT38_22090 PF00764 Arginosuccinate synthase LIT38_22095 PF00144 Beta-lactamase LIT38_22105 PF00994 Probable molybdopterin binding domain LIT38_22115 PF00871 Acetokinase family LIT38_22120 PF02384 N-6 DNA Methylase LIT38_22125 PF08534 Redoxin LIT38_22130 PF09579 Sporulation protein YtfJ (Spore_YtfJ) LIT38_22135 PF11167 Protein of unknown function (DUF2953) LIT38_22140 PF06271 RDD family LIT38_22145 PF01343 Peptidase family S49 LIT38_22150 PF01513 ATP-NAD kinase LIT38_22155 PF00892 EamA-like transporter family LIT38_22160 PF07969 Amidohydrolase family LIT38_22165 PF00501 AMP-binding enzyme LIT38_22165 PF13193 AMP-binding enzyme C-terminal domain LIT38_22170 PF00269 Small, acid-soluble spore proteins, alpha/beta type LIT38_22175 PF02568 Thiamine biosynthesis protein (ThiI) LIT38_22175 PF02926 THUMP domain LIT38_22180 PF00266 Aminotransferase class-V LIT38_22185 PF05525 Branched-chain amino acid transport protein LIT38_22190 PF06160 Septation ring formation regulator, EzrA LIT38_22195 PF02811 PHP domain LIT38_22200 PF00440 Bacterial regulatory proteins, tetR family LIT38_22205 PF13185 GAF domain LIT38_22210 PF01053 Cys/Met metabolism PLP-dependent enzyme LIT38_22215 PF00990 Diguanylate cyclase, GGDEF domain LIT38_22220 PF01479 S4 domain LIT38_22220 PF00163 Ribosomal protein S4/S9 N-terminal domain LIT38_22225 PF01479 S4 domain LIT38_22225 PF00579 tRNA synthetases class I (W and Y) LIT38_22230 PF00912 Transglycosylase LIT38_22230 PF00905 Penicillin binding protein transpeptidase domain LIT38_22235 PF00501 AMP-binding enzyme LIT38_22235 PF13193 AMP-binding enzyme C-terminal domain LIT38_22240 PF00583 Acetyltransferase (GNAT) family LIT38_22245 PF00571 CBS domain LIT38_22250 PF00850 Histone deacetylase domain LIT38_22255 PF13677 Membrane MotB of proton-channel complex MotA/MotB LIT38_22255 PF00691 OmpA family LIT38_22260 PF01618 MotA/TolQ/ExbB proton channel family LIT38_22265 PF00356 Bacterial regulatory proteins, lacI family LIT38_22270 PF00793 DAHP synthetase I family LIT38_22270 PF01817 Chorismate mutase type II LIT38_22275 PF02491 SHS2 domain inserted in FTSA LIT38_22280 PF11009 Protein of unknown function (DUF2847) LIT38_22285 PF12732 YtxH-like protein LIT38_22290 PF06103 Bacterial protein of unknown function (DUF948) LIT38_22295 PF02073 Thermophilic metalloprotease (M29) LIT38_22300 PF01225 Mur ligase family, catalytic domain LIT38_22300 PF02875 Mur ligase family, glutamate ligase domain LIT38_22300 PF08245 Mur ligase middle domain LIT38_22310 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain LIT38_22310 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain LIT38_22315 PF17854 FtsK alpha domain LIT38_22315 PF09397 Ftsk gamma domain LIT38_22315 PF01580 FtsK/SpoIIIE family LIT38_22320 PF07285 Protein of unknown function (DUF1444) LIT38_22325 PF00085 Thioredoxin LIT38_22340 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ LIT38_22345 PF01931 Protein of unknown function DUF84 LIT38_22350 PF05343 M42 glutamyl aminopeptidase LIT38_22355 PF03413 Peptidase propeptide and YPEB domain LIT38_22360 PF00753 Metallo-beta-lactamase superfamily LIT38_22365 PF02390 Putative methyltransferase LIT38_22370 PF14165 YtzH-like protein LIT38_22375 PF01636 Phosphotransferase enzyme family LIT38_22380 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LIT38_22380 PF00128 Alpha amylase, catalytic domain LIT38_22380 PF17999 Pullulanase N1-terminal domain LIT38_22385 PF00781 Diacylglycerol kinase catalytic domain LIT38_22395 PF02834 LigT like Phosphoesterase LIT38_22400 PF00291 Pyridoxal-phosphate dependent enzyme LIT38_22405 PF01063 Amino-transferase class IV LIT38_22410 PF01546 Peptidase family M20/M25/M40 LIT38_22415 PF05975 Bacterial ABC transporter protein EcsB LIT38_22420 PF00005 ABC transporter LIT38_22430 PF08220 DeoR-like helix-turn-helix domain LIT38_22435 PF00849 RNA pseudouridylate synthase LIT38_22435 PF01479 S4 domain LIT38_22440 PF14667 Polysaccharide biosynthesis C-terminal domain LIT38_22440 PF01943 Polysaccharide biosynthesis protein LIT38_22450 PF10957 Sporulation protein Cse60 LIT38_22455 PF00581 Rhodanese-like domain LIT38_22460 PF08264 Anticodon-binding domain of tRNA LIT38_22460 PF00133 tRNA synthetases class I (I, L, M and V) LIT38_22460 PF13603 Leucyl-tRNA synthetase, Domain 2 LIT38_22460 PF09334 tRNA synthetases class I (M) LIT38_22475 PF00158 Sigma-54 interaction domain LIT38_22475 PF13426 PAS domain LIT38_22475 PF02954 Bacterial regulatory protein, Fis family LIT38_22485 PF07690 Major Facilitator Superfamily LIT38_22495 PF10732 Protein of unknown function (DUF2524) LIT38_22500 PF04055 Radical SAM superfamily LIT38_22500 PF16199 Radical_SAM C-terminal domain LIT38_22505 PF06962 Putative rRNA methylase LIT38_22510 PF10776 Protein of unknown function (DUF2600) LIT38_22515 PF12146 Serine aminopeptidase, S33 LIT38_22520 PF00132 Bacterial transferase hexapeptide (six repeats) LIT38_22525 PF13529 Peptidase_C39 like family LIT38_22530 PF00733 Asparagine synthase LIT38_22530 PF13537 Glutamine amidotransferase domain LIT38_22535 PF02773 S-adenosylmethionine synthetase, C-terminal domain LIT38_22535 PF02772 S-adenosylmethionine synthetase, central domain LIT38_22535 PF00438 S-adenosylmethionine synthetase, N-terminal domain LIT38_22545 PF01293 Phosphoenolpyruvate carboxykinase LIT38_22550 PF10763 Protein of unknown function (DUF2584) LIT38_22555 PF00326 Prolyl oligopeptidase family LIT38_22565 PF00005 ABC transporter LIT38_22570 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_22575 PF00293 NUDIX domain LIT38_22595 PF00210 Ferritin-like domain LIT38_22605 PF13091 PLD-like domain LIT38_22605 PF13396 Phospholipase_D-nuclease N-terminal LIT38_22615 PF02664 S-Ribosylhomocysteinase (LuxS) LIT38_22620 PF01809 Putative membrane protein insertion efficiency factor LIT38_22625 PF00484 Carbonic anhydrase LIT38_22630 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment LIT38_22630 PF01297 Zinc-uptake complex component A periplasmic LIT38_22635 PF01654 Cytochrome bd terminal oxidase subunit I LIT38_22640 PF02322 Cytochrome bd terminal oxidase subunit II LIT38_22645 PF07561 Domain of Unknown Function (DUF1540) LIT38_22650 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LIT38_22650 PF13378 Enolase C-terminal domain-like LIT38_22655 PF13193 AMP-binding enzyme C-terminal domain LIT38_22655 PF00501 AMP-binding enzyme LIT38_22660 PF00378 Enoyl-CoA hydratase/isomerase LIT38_22665 PF00561 alpha/beta hydrolase fold LIT38_22670 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain LIT38_22670 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain LIT38_22670 PF16582 Middle domain of thiamine pyrophosphate LIT38_22675 PF00425 chorismate binding enzyme LIT38_22680 PF01040 UbiA prenyltransferase family LIT38_22685 PF01258 Prokaryotic dksA/traR C4-type zinc finger LIT38_22700 PF00343 Carbohydrate phosphorylase LIT38_22705 PF08323 Starch synthase catalytic domain LIT38_22705 PF00534 Glycosyl transferases group 1 LIT38_22710 PF00483 Nucleotidyl transferase LIT38_22715 PF00483 Nucleotidyl transferase LIT38_22720 PF02806 Alpha amylase, C-terminal all-beta domain LIT38_22720 PF00128 Alpha amylase, catalytic domain LIT38_22720 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) LIT38_22855 PF02308 MgtC family LIT38_22865 PF02322 Cytochrome bd terminal oxidase subunit II LIT38_22870 PF01654 Cytochrome bd terminal oxidase subunit I LIT38_22875 PF13460 NAD(P)H-binding LIT38_22890 PF02129 X-Pro dipeptidyl-peptidase (S15 family) LIT38_22890 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain LIT38_22895 PF04389 Peptidase family M28 LIT38_22895 PF02225 PA domain LIT38_22905 PF07885 Ion channel LIT38_22905 PF02254 TrkA-N domain LIT38_22910 PF08868 YugN-like family LIT38_22920 PF00342 Phosphoglucose isomerase LIT38_22925 PF00465 Iron-containing alcohol dehydrogenase LIT38_22930 PF04070 Domain of unknown function (DUF378) LIT38_22935 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain LIT38_22935 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase LIT38_22940 PF00202 Aminotransferase class-III LIT38_22945 PF00171 Aldehyde dehydrogenase family LIT38_22950 PF00158 Sigma-54 interaction domain LIT38_22950 PF02954 Bacterial regulatory protein, Fis family LIT38_22950 PF13426 PAS domain LIT38_22955 PF01152 Bacterial-like globin LIT38_22960 PF03553 Na+/H+ antiporter family LIT38_22965 PF00575 S1 RNA binding domain LIT38_22975 PF00155 Aminotransferase class I and II LIT38_22980 PF01037 Lrp/AsnC ligand binding domain LIT38_22985 PF00561 alpha/beta hydrolase fold LIT38_22985 PF08386 TAP-like protein LIT38_22995 PF00155 Aminotransferase class I and II LIT38_23005 PF08000 Bacterial PH domain LIT38_23010 PF00080 Copper/zinc superoxide dismutase (SODC) LIT38_23020 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD LIT38_23025 PF08810 Kinase associated protein B LIT38_23030 PF00929 Exonuclease LIT38_23035 PF00912 Transglycosylase LIT38_23035 PF00905 Penicillin binding protein transpeptidase domain LIT38_23040 PF00905 Penicillin binding protein transpeptidase domain LIT38_23040 PF00912 Transglycosylase LIT38_23060 PF00361 Proton-conducting membrane transporter LIT38_23060 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LIT38_23060 PF13244 Domain of unknown function (DUF4040) LIT38_23065 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter LIT38_23070 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LIT38_23075 PF00361 Proton-conducting membrane transporter LIT38_23080 PF01899 Na+/H+ ion antiporter subunit LIT38_23085 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) LIT38_23090 PF03334 Na+/H+ antiporter subunit LIT38_23095 PF03061 Thioesterase superfamily LIT38_23120 PF01262 Alanine dehydrogenase/PNT, C-terminal domain LIT38_23120 PF05222 Alanine dehydrogenase/PNT, N-terminal domain LIT38_23125 PF06018 CodY GAF-like domain LIT38_23125 PF17853 GGDEF-like domain LIT38_23125 PF13556 PucR C-terminal helix-turn-helix domain LIT38_23130 PF01235 Sodium:alanine symporter family LIT38_23155 PF01569 PAP2 superfamily LIT38_23160 PF13411 MerR HTH family regulatory protein LIT38_23165 PF00174 Oxidoreductase molybdopterin binding domain LIT38_23170 PF13726 Na+-H+ antiporter family LIT38_23170 PF03553 Na+/H+ antiporter family LIT38_23175 PF00883 Cytosol aminopeptidase family, catalytic domain LIT38_23175 PF02789 Cytosol aminopeptidase family, N-terminal domain LIT38_23195 PF02681 Divergent PAP2 family LIT38_23205 PF06725 3D domain LIT38_23210 PF14068 Putative membrane protein LIT38_23215 PF17302 Family of unknown function (DUF5351) LIT38_23220 PF00293 NUDIX domain LIT38_23225 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIT38_23230 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIT38_23235 PF01521 Iron-sulphur cluster biosynthesis LIT38_23245 PF07293 Protein of unknown function (DUF1450) LIT38_23250 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIT38_23255 PF07315 Protein of unknown function (DUF1462) LIT38_23265 PF00288 GHMP kinases N terminal domain LIT38_23265 PF08544 GHMP kinases C terminal LIT38_23270 PF00291 Pyridoxal-phosphate dependent enzyme LIT38_23275 PF00742 Homoserine dehydrogenase LIT38_23275 PF03447 Homoserine dehydrogenase, NAD binding domain LIT38_23275 PF01842 ACT domain LIT38_23280 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LIT38_23280 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LIT38_23290 PF04608 Phosphatidylglycerophosphatase A LIT38_23295 PF13344 Haloacid dehalogenase-like hydrolase LIT38_23300 PF08220 DeoR-like helix-turn-helix domain LIT38_23300 PF00455 DeoR C terminal sensor domain LIT38_23305 PF01934 Protein of unknown function DUF86 LIT38_23310 PF13188 PAS domain LIT38_23310 PF03707 Bacterial signalling protein N terminal repeat LIT38_23310 PF00990 Diguanylate cyclase, GGDEF domain LIT38_23310 PF00563 EAL domain LIT38_23325 PF06265 Protein of unknown function (DUF1027) LIT38_23330 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) LIT38_23335 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family LIT38_23335 PF04055 Radical SAM superfamily LIT38_23340 PF01551 Peptidase family M23 LIT38_23350 PF00209 Sodium:neurotransmitter symporter family LIT38_23355 PF09557 Domain of unknown function (DUF2382) LIT38_23355 PF11181 Heat induced stress protein YflT LIT38_23360 PF03553 Na+/H+ antiporter family LIT38_23365 PF09560 Sporulation protein YunB (Spo_YunB) LIT38_23370 PF00072 Response regulator receiver domain LIT38_23375 PF08827 Domain of unknown function (DUF1805) LIT38_23380 PF01904 Protein of unknown function DUF72 LIT38_23390 PF03845 Spore germination protein LIT38_23395 PF03323 Bacillus/Clostridium GerA spore germination protein LIT38_23400 PF01458 Uncharacterized protein family (UPF0051) LIT38_23405 PF01592 NifU-like N terminal domain LIT38_23410 PF00266 Aminotransferase class-V LIT38_23415 PF01458 Uncharacterized protein family (UPF0051) LIT38_23420 PF00005 ABC transporter LIT38_23430 PF02627 Carboxymuconolactone decarboxylase family LIT38_23435 PF03180 NLPA lipoprotein LIT38_23440 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_23445 PF09383 NIL domain LIT38_23445 PF00005 ABC transporter LIT38_23450 PF01053 Cys/Met metabolism PLP-dependent enzyme LIT38_23465 PF00085 Thioredoxin LIT38_23470 PF01751 Toprim domain LIT38_23480 PF01597 Glycine cleavage H-protein LIT38_23485 PF03960 ArsC family LIT38_23490 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIT38_23490 PF02770 Acyl-CoA dehydrogenase, middle domain LIT38_23490 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIT38_23495 PF00108 Thiolase, N-terminal domain LIT38_23495 PF02803 Thiolase, C-terminal domain LIT38_23500 PF00378 Enoyl-CoA hydratase/isomerase LIT38_23500 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LIT38_23500 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LIT38_23520 PF10835 Protein of unknown function (DUF2573) LIT38_23530 PF00005 ABC transporter LIT38_23535 PF01032 FecCD transport family LIT38_23540 PF01032 FecCD transport family LIT38_23545 PF01497 Periplasmic binding protein LIT38_23550 PF03323 Bacillus/Clostridium GerA spore germination protein LIT38_23555 PF03845 Spore germination protein LIT38_23560 PF05504 Spore germination B3/ GerAC like, C-terminal LIT38_23565 PF01098 Cell cycle protein LIT38_23575 PF13115 YtkA-like LIT38_23580 PF07454 Stage II sporulation protein P (SpoIIP) LIT38_23590 PF00106 short chain dehydrogenase LIT38_23600 PF00005 ABC transporter LIT38_23605 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_23610 PF00497 Bacterial extracellular solute-binding proteins, family 3 LIT38_23625 PF01327 Polypeptide deformylase LIT38_23635 PF03471 Transporter associated domain LIT38_23635 PF00999 Sodium/hydrogen exchanger family LIT38_23635 PF02080 TrkA-C domain LIT38_23650 PF13529 Peptidase_C39 like family LIT38_23655 PF00296 Luciferase-like monooxygenase LIT38_23660 PF00106 short chain dehydrogenase LIT38_23665 PF03176 MMPL family LIT38_23670 PF01047 MarR family LIT38_23680 PF03358 NADPH-dependent FMN reductase LIT38_23685 PF00924 Mechanosensitive ion channel LIT38_23690 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LIT38_23695 PF02537 CrcB-like protein, Camphor Resistance (CrcB) LIT38_23710 PF01668 SmpB protein LIT38_23715 PF17876 Cold shock domain LIT38_23715 PF08206 Ribonuclease B OB domain LIT38_23715 PF00773 RNB domain LIT38_23715 PF00575 S1 RNA binding domain LIT38_23720 PF12146 Serine aminopeptidase, S33 LIT38_23725 PF03840 Preprotein translocase SecG subunit LIT38_23735 PF03952 Enolase, N-terminal domain LIT38_23735 PF00113 Enolase, C-terminal TIM barrel domain LIT38_23740 PF06415 BPG-independent PGAM N-terminus (iPGM_N) LIT38_23740 PF01676 Metalloenzyme superfamily LIT38_23745 PF00121 Triosephosphate isomerase LIT38_23750 PF00162 Phosphoglycerate kinase LIT38_23755 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain LIT38_23755 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain LIT38_23760 PF04198 Putative sugar-binding domain LIT38_23770 PF04963 Sigma-54 factor, core binding domain LIT38_23770 PF00309 Sigma-54 factor, Activator interacting domain (AID) LIT38_23770 PF04552 Sigma-54, DNA binding domain LIT38_23780 PF00574 Clp protease LIT38_23785 PF00381 PTS HPr component phosphorylation site LIT38_23790 PF02650 WhiA C-terminal HTH domain LIT38_23790 PF14527 WhiA LAGLIDADG-like domain LIT38_23790 PF10298 WhiA N-terminal LAGLIDADG-like domain LIT38_23795 PF01933 Uncharacterised protein family UPF0052 LIT38_23800 PF03668 P-loop ATPase protein family LIT38_23805 PF00293 NUDIX domain LIT38_23810 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIT38_23820 PF01235 Sodium:alanine symporter family LIT38_23825 PF00171 Aldehyde dehydrogenase family LIT38_23830 PF00701 Dihydrodipicolinate synthetase family LIT38_23835 PF05544 Proline racemase LIT38_23840 PF05544 Proline racemase LIT38_23845 PF01266 FAD dependent oxidoreductase LIT38_23850 PF00158 Sigma-54 interaction domain LIT38_23850 PF00989 PAS fold LIT38_23850 PF02954 Bacterial regulatory protein, Fis family LIT38_23855 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIT38_23855 PF04324 BFD-like [2Fe-2S] binding domain LIT38_23865 PF04324 BFD-like [2Fe-2S] binding domain LIT38_23865 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIT38_23870 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase LIT38_23870 PF01502 Phosphoribosyl-AMP cyclohydrolase LIT38_23875 PF00977 Histidine biosynthesis protein LIT38_23880 PF00977 Histidine biosynthesis protein LIT38_23885 PF00117 Glutamine amidotransferase class-I LIT38_23890 PF00475 Imidazoleglycerol-phosphate dehydratase LIT38_23895 PF00815 Histidinol dehydrogenase LIT38_23900 PF01634 ATP phosphoribosyltransferase LIT38_23905 PF13393 Histidyl-tRNA synthetase LIT38_23910 PF14602 Hexapeptide repeat of succinyl-transferase LIT38_23915 PF13419 Haloacid dehalogenase-like hydrolase LIT38_23920 PF07670 Nucleoside recognition LIT38_23925 PF01790 Prolipoprotein diacylglyceryl transferase LIT38_23930 PF02603 HPr Serine kinase N terminus LIT38_23930 PF07475 HPr Serine kinase C-terminal domain LIT38_23935 PF02378 Phosphotransferase system, EIIC LIT38_23935 PF00367 phosphotransferase system, EIIB LIT38_23945 PF13580 SIS domain LIT38_23950 PF01979 Amidohydrolase family LIT38_23955 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase LIT38_23960 PF07702 UTRA domain LIT38_23960 PF00392 Bacterial regulatory proteins, gntR family LIT38_23965 PF05036 Sporulation related domain LIT38_23965 PF01520 N-acetylmuramoyl-L-alanine amidase LIT38_23970 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV LIT38_23980 PF13349 Putative adhesin LIT38_24000 PF00005 ABC transporter LIT38_24000 PF17755 UvrA DNA-binding domain LIT38_24000 PF17760 UvrA interaction domain LIT38_24005 PF17757 UvrB interaction domain LIT38_24005 PF12344 Ultra-violet resistance protein B LIT38_24005 PF04851 Type III restriction enzyme, res subunit LIT38_24005 PF00271 Helicase conserved C-terminal domain LIT38_24005 PF02151 UvrB/uvrC motif LIT38_24010 PF09964 Uncharacterized protein conserved in bacteria (DUF2198) LIT38_24015 PF00269 Small, acid-soluble spore proteins, alpha/beta type LIT38_24025 PF03180 NLPA lipoprotein LIT38_24030 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_24035 PF00005 ABC transporter LIT38_24035 PF09383 NIL domain LIT38_24040 PF00892 EamA-like transporter family LIT38_24045 PF00155 Aminotransferase class I and II LIT38_24045 PF00392 Bacterial regulatory proteins, gntR family LIT38_24050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_24050 PF00512 His Kinase A (phospho-acceptor) domain LIT38_24050 PF00989 PAS fold LIT38_24050 PF08447 PAS fold LIT38_24060 PF01594 AI-2E family transporter LIT38_24080 PF13439 Glycosyltransferase Family 4 LIT38_24080 PF00534 Glycosyl transferases group 1 LIT38_24090 PF01050 Mannose-6-phosphate isomerase LIT38_24090 PF00483 Nucleotidyl transferase LIT38_24095 PF17820 PDZ domain LIT38_24100 PF17820 PDZ domain LIT38_24100 PF03572 Peptidase family S41 LIT38_24100 PF01471 Putative peptidoglycan binding domain LIT38_24105 PF00877 NlpC/P60 family LIT38_24110 PF02687 FtsX-like permease family LIT38_24110 PF18075 FtsX extracellular domain LIT38_24115 PF00005 ABC transporter LIT38_24120 PF13442 Cytochrome C oxidase, cbb3-type, subunit III LIT38_24125 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) LIT38_24125 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 LIT38_24140 PF07516 SecA Wing and Scaffold domain LIT38_24140 PF02810 SEC-C motif LIT38_24140 PF07517 SecA DEAD-like domain LIT38_24140 PF01043 SecA preprotein cross-linking domain LIT38_24150 PF05225 helix-turn-helix, Psq domain LIT38_24150 PF02810 SEC-C motif LIT38_24155 PF02417 Chromate transporter LIT38_24160 PF02417 Chromate transporter LIT38_24180 PF08664 YcbB domain LIT38_24180 PF00072 Response regulator receiver domain LIT38_24185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_24190 PF04960 Glutaminase LIT38_24195 PF01235 Sodium:alanine symporter family LIT38_24200 PF02608 ABC transporter substrate-binding protein PnrA-like LIT38_24205 PF12729 Four helix bundle sensory module for signal transduction LIT38_24205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIT38_24205 PF00672 HAMP domain LIT38_24210 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus LIT38_24210 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein LIT38_24230 PF02561 Flagellar protein FliS LIT38_24235 PF07195 Flagellar hook-associated protein 2 C-terminus LIT38_24235 PF02465 Flagellar hook-associated protein 2 N-terminus LIT38_24235 PF07196 Flagellin hook IN motif LIT38_24240 PF03646 FlaG protein LIT38_24245 PF00669 Bacterial flagellin N-terminal helical region LIT38_24245 PF00700 Bacterial flagellin C-terminal helical region LIT38_24250 PF02599 Global regulator protein family LIT38_24255 PF02623 FliW protein LIT38_24265 PF00700 Bacterial flagellin C-terminal helical region LIT38_24265 PF00669 Bacterial flagellin N-terminal helical region LIT38_24270 PF00460 Flagella basal body rod protein LIT38_24270 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LIT38_24290 PF00563 EAL domain LIT38_24290 PF00990 Diguanylate cyclase, GGDEF domain LIT38_24290 PF08447 PAS fold LIT38_24290 PF08448 PAS fold LIT38_24300 PF00271 Helicase conserved C-terminal domain LIT38_24300 PF04851 Type III restriction enzyme, res subunit LIT38_24305 PF02645 Uncharacterised protein, DegV family COG1307 LIT38_24315 PF00196 Bacterial regulatory proteins, luxR family LIT38_24315 PF00072 Response regulator receiver domain LIT38_24320 PF07730 Histidine kinase LIT38_24320 PF05384 Sensor protein DegS LIT38_24320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_24325 PF09186 Domain of unknown function (DUF1949) LIT38_24325 PF01205 Uncharacterized protein family UPF0029 LIT38_24330 PF03816 Cell envelope-related transcriptional attenuator domain LIT38_24335 PF01520 N-acetylmuramoyl-L-alanine amidase LIT38_24345 PF04122 Putative cell wall binding repeat 2 LIT38_24345 PF08486 Stage II sporulation protein LIT38_24355 PF00534 Glycosyl transferases group 1 LIT38_24355 PF13439 Glycosyltransferase Family 4 LIT38_24365 PF02350 UDP-N-acetylglucosamine 2-epimerase LIT38_24375 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LIT38_24375 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LIT38_24375 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LIT38_24380 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LIT38_24380 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LIT38_24385 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LIT38_24390 PF00953 Glycosyl transferase family 4 LIT38_24395 PF00884 Sulfatase LIT38_24405 PF04542 Sigma-70 region 2 LIT38_24405 PF08281 Sigma-70, region 4 LIT38_24420 PF13439 Glycosyltransferase Family 4 LIT38_24420 PF00534 Glycosyl transferases group 1 LIT38_24425 PF04932 O-Antigen ligase LIT38_24430 PF00746 LPXTG cell wall anchor motif LIT38_24430 PF02225 PA domain LIT38_24430 PF00082 Subtilase family LIT38_24430 PF06280 Fn3-like domain LIT38_24445 PF04122 Putative cell wall binding repeat 2 LIT38_24445 PF08486 Stage II sporulation protein LIT38_24450 PF01494 FAD binding domain LIT38_24460 PF03816 Cell envelope-related transcriptional attenuator domain LIT38_24475 PF10460 Peptidase M30 LIT38_24485 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LIT38_24490 PF17836 PglD N-terminal domain LIT38_24490 PF00132 Bacterial transferase hexapeptide (six repeats) LIT38_24495 PF02397 Bacterial sugar transferase LIT38_24505 PF00132 Bacterial transferase hexapeptide (six repeats) LIT38_24505 PF00483 Nucleotidyl transferase LIT38_24510 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family LIT38_24515 PF13439 Glycosyltransferase Family 4 LIT38_24515 PF00534 Glycosyl transferases group 1 LIT38_24520 PF13439 Glycosyltransferase Family 4 LIT38_24520 PF00534 Glycosyl transferases group 1 LIT38_24540 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain LIT38_24540 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain LIT38_24540 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain LIT38_24545 PF02894 Oxidoreductase family, C-terminal alpha/beta domain LIT38_24545 PF01408 Oxidoreductase family, NAD-binding Rossmann fold LIT38_24550 PF02719 Polysaccharide biosynthesis protein LIT38_24560 PF13614 AAA domain LIT38_24565 PF13807 G-rich domain on putative tyrosine kinase LIT38_24565 PF02706 Chain length determinant protein LIT38_24590 PF04203 Sortase domain LIT38_24595 PF04122 Putative cell wall binding repeat 2 LIT38_24595 PF01520 N-acetylmuramoyl-L-alanine amidase LIT38_24605 PF00149 Calcineurin-like phosphoesterase LIT38_24605 PF02872 5'-nucleotidase, C-terminal domain LIT38_24610 PF01520 N-acetylmuramoyl-L-alanine amidase LIT38_24610 PF04122 Putative cell wall binding repeat 2 LIT38_24645 PF01476 LysM domain LIT38_24645 PF00877 NlpC/P60 family LIT38_24670 PF03616 Sodium/glutamate symporter LIT38_24675 PF00491 Arginase family LIT38_24680 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIT38_24680 PF03466 LysR substrate binding domain LIT38_24685 PF03606 C4-dicarboxylate anaerobic carrier LIT38_24690 PF05223 NTF2-like N-terminal transpeptidase domain LIT38_24690 PF03717 Penicillin-binding Protein dimerisation domain LIT38_24690 PF00905 Penicillin binding protein transpeptidase domain LIT38_24700 PF00180 Isocitrate/isopropylmalate dehydrogenase LIT38_24710 PF03060 Nitronate monooxygenase LIT38_24720 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain LIT38_24720 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain LIT38_24725 PF00108 Thiolase, N-terminal domain LIT38_24725 PF02803 Thiolase, C-terminal domain LIT38_24730 PF02770 Acyl-CoA dehydrogenase, middle domain LIT38_24730 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIT38_24730 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIT38_24735 PF00378 Enoyl-CoA hydratase/isomerase LIT38_24740 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LIT38_24740 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LIT38_24745 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LIT38_24750 PF16868 NMT1-like family LIT38_24755 PF01144 Coenzyme A transferase LIT38_24760 PF01144 Coenzyme A transferase LIT38_24765 PF13380 CoA binding domain LIT38_24765 PF13607 Succinyl-CoA ligase like flavodoxin domain LIT38_24770 PF00158 Sigma-54 interaction domain LIT38_24770 PF00989 PAS fold LIT38_24770 PF02954 Bacterial regulatory protein, Fis family LIT38_24775 PF03611 PTS system sugar-specific permease component LIT38_24780 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit LIT38_24785 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 LIT38_24800 PF14698 Argininosuccinate lyase C-terminal LIT38_24800 PF00206 Lyase LIT38_24805 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_24810 PF00005 ABC transporter LIT38_24810 PF08402 TOBE domain LIT38_24820 PF01047 MarR family LIT38_24820 PF00480 ROK family LIT38_24845 PF00672 HAMP domain LIT38_24845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIT38_24845 PF02743 Cache domain LIT38_24850 PF08447 PAS fold LIT38_24850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIT38_24850 PF13426 PAS domain LIT38_24855 PF00171 Aldehyde dehydrogenase family LIT38_24865 PF00465 Iron-containing alcohol dehydrogenase LIT38_24870 PF00158 Sigma-54 interaction domain LIT38_24870 PF02954 Bacterial regulatory protein, Fis family LIT38_24870 PF00989 PAS fold LIT38_24880 PF03606 C4-dicarboxylate anaerobic carrier LIT38_24885 PF13378 Enolase C-terminal domain-like LIT38_24885 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain LIT38_24895 PF05343 M42 glutamyl aminopeptidase LIT38_24900 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle LIT38_24905 PF07969 Amidohydrolase family LIT38_24910 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin LIT38_24915 PF01425 Amidase LIT38_24930 PF07687 Peptidase dimerisation domain LIT38_24930 PF01546 Peptidase family M20/M25/M40 LIT38_24935 PF01546 Peptidase family M20/M25/M40 LIT38_24940 PF00158 Sigma-54 interaction domain LIT38_24955 PF00356 Bacterial regulatory proteins, lacI family LIT38_24970 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_24975 PF00528 Binding-protein-dependent transport system inner membrane component LIT38_24980 PF00294 pfkB family carbohydrate kinase LIT38_25015 PF07687 Peptidase dimerisation domain LIT38_25015 PF01546 Peptidase family M20/M25/M40 LIT38_25020 PF01546 Peptidase family M20/M25/M40 LIT38_25020 PF07687 Peptidase dimerisation domain LIT38_25025 PF03806 AbgT putative transporter family LIT38_25030 PF01546 Peptidase family M20/M25/M40 LIT38_25035 PF01546 Peptidase family M20/M25/M40 LIT38_25035 PF07687 Peptidase dimerisation domain LIT38_25055 PF02872 5'-nucleotidase, C-terminal domain LIT38_25055 PF00149 Calcineurin-like phosphoesterase LIT38_25065 PF01476 LysM domain LIT38_25065 PF06725 3D domain LIT38_25070 PF01471 Putative peptidoglycan binding domain LIT38_25070 PF07486 Cell Wall Hydrolase LIT38_25075 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIT38_25075 PF00672 HAMP domain LIT38_25080 PF01676 Metalloenzyme superfamily LIT38_25085 PF01168 Alanine racemase, N-terminal domain LIT38_25090 PF00155 Aminotransferase class I and II LIT38_25095 PF02126 Phosphotriesterase family LIT38_25100 PF10797 Protein of unknown function LIT38_25105 PF10941 Protein of unknown function DUF2620 LIT38_25115 PF14502 Helix-turn-helix domain LIT38_25115 PF14503 YhfZ C-terminal domain LIT38_25120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIT38_25120 PF00672 HAMP domain LIT38_25145 PF00271 Helicase conserved C-terminal domain LIT38_25145 PF00176 SNF2 family N-terminal domain LIT38_25145 PF12419 SNF2 Helicase protein LIT38_25160 PF00436 Single-strand binding protein family LIT38_25175 PF07977 FabA-like domain LIT38_25185 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LIT38_25185 PF00460 Flagella basal body rod protein LIT38_25190 PF06429 Flagellar basal body rod FlgEFG protein C-terminal LIT38_25190 PF00460 Flagella basal body rod protein LIT38_25200 PF12116 Stage III sporulation protein D LIT38_25205 PF01476 LysM domain LIT38_25205 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase LIT38_25210 PF02811 PHP domain LIT38_25210 PF00929 Exonuclease LIT38_25210 PF11490 DNA polymerase III polC-type N-terminus II LIT38_25210 PF07733 Bacterial DNA polymerase III alpha NTPase domain LIT38_25210 PF17657 Bacterial DNA polymerase III alpha subunit finger domain LIT38_25210 PF14579 Helix-hairpin-helix motif LIT38_25210 PF14480 DNA polymerase III polC-type N-terminus I LIT38_25215 PF00571 CBS domain LIT38_25215 PF01743 Poly A polymerase head domain LIT38_25220 PF00474 Sodium:solute symporter family LIT38_25235 PF01470 Pyroglutamyl peptidase LIT38_25240 PF01551 Peptidase family M23 LIT38_25250 PF08486 Stage II sporulation protein LIT38_25255 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family LIT38_25255 PF03466 LysR substrate binding domain LIT38_25260 PF00890 FAD binding domain LIT38_25260 PF14537 Cytochrome c3 LIT38_25270 PF01970 Tripartite tricarboxylate transporter TctA family LIT38_25280 PF03401 Tripartite tricarboxylate transporter family receptor LIT38_25285 PF12431 Transcriptional regulator LIT38_25285 PF08279 HTH domain LIT38_25285 PF00072 Response regulator receiver domain LIT38_25290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_25290 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain LIT38_25295 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LIT38_25300 PF08680 TATA-box binding LIT38_25305 PF06612 Protein of unknown function (DUF1146) LIT38_25310 PF00361 Proton-conducting membrane transporter LIT38_25315 PF00361 Proton-conducting membrane transporter LIT38_25320 PF00361 Proton-conducting membrane transporter LIT38_25320 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus LIT38_25320 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus LIT38_25325 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L LIT38_25330 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 LIT38_25340 PF00146 NADH dehydrogenase LIT38_25345 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit LIT38_25350 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit LIT38_25355 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit LIT38_25360 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 LIT38_25365 PF06725 3D domain LIT38_25365 PF01476 LysM domain LIT38_25380 PF12327 FtsZ family, C-terminal domain LIT38_25380 PF00091 Tubulin/FtsZ family, GTPase domain LIT38_25385 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain LIT38_25385 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain LIT38_25390 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LIT38_25390 PF02874 ATP synthase alpha/beta family, beta-barrel domain LIT38_25395 PF00231 ATP synthase LIT38_25400 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LIT38_25400 PF00306 ATP synthase alpha/beta chain, C terminal domain LIT38_25400 PF02874 ATP synthase alpha/beta family, beta-barrel domain LIT38_25405 PF00213 ATP synthase delta (OSCP) subunit LIT38_25410 PF00430 ATP synthase B/B' CF(0) LIT38_25415 PF00137 ATP synthase subunit C LIT38_25420 PF00119 ATP synthase A chain LIT38_25425 PF03899 ATP synthase I chain LIT38_25435 PF05922 Peptidase inhibitor I9 LIT38_25435 PF00082 Subtilase family LIT38_25435 PF13860 FlgD Ig-like domain LIT38_25435 PF02225 PA domain LIT38_25440 PF00144 Beta-lactamase LIT38_25455 PF02350 UDP-N-acetylglucosamine 2-epimerase LIT38_25465 PF00464 Serine hydroxymethyltransferase LIT38_25470 PF04260 Protein of unknown function (DUF436) LIT38_25475 PF02502 Ribose/Galactose Isomerase LIT38_25480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIT38_25480 PF00672 HAMP domain LIT38_25480 PF12729 Four helix bundle sensory module for signal transduction LIT38_25485 PF01451 Low molecular weight phosphotyrosine protein phosphatase LIT38_25490 PF02659 Putative manganese efflux pump LIT38_25495 PF01300 Telomere recombination LIT38_25495 PF03481 Putative GTP-binding controlling metal-binding LIT38_25510 PF09551 Stage II sporulation protein R (spore_II_R) LIT38_25515 PF17827 PrmC N-terminal domain LIT38_25515 PF13847 Methyltransferase domain LIT38_25520 PF00472 RF-1 domain LIT38_25520 PF03462 PCRF domain LIT38_25525 PF07729 FCD domain LIT38_25525 PF00392 Bacterial regulatory proteins, gntR family LIT38_25530 PF13536 Putative multidrug resistance efflux transporter LIT38_25540 PF00265 Thymidine kinase LIT38_25545 PF01197 Ribosomal protein L31 LIT38_25550 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain LIT38_25550 PF07498 Rho termination factor, N-terminal domain LIT38_25550 PF07497 Rho termination factor, RNA-binding domain LIT38_25555 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded LIT38_25560 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) LIT38_25565 PF00923 Transaldolase/Fructose-6-phosphate aldolase LIT38_25570 PF01116 Fructose-bisphosphate aldolase class-II LIT38_25575 PF00072 Response regulator receiver domain LIT38_25580 PF10740 Domain of unknown function (DUF2529) LIT38_25585 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family LIT38_25590 PF00106 short chain dehydrogenase LIT38_25595 PF03786 D-mannonate dehydratase (UxuA) LIT38_25605 PF08240 Alcohol dehydrogenase GroES-like domain LIT38_25605 PF00107 Zinc-binding dehydrogenase LIT38_25610 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component LIT38_25620 PF03480 Bacterial extracellular solute-binding protein, family 7 LIT38_25625 PF02615 Malate/L-lactate dehydrogenase LIT38_25630 PF01380 SIS domain LIT38_25635 PF00294 pfkB family carbohydrate kinase LIT38_25640 PF00356 Bacterial regulatory proteins, lacI family LIT38_25645 PF06418 CTP synthase N-terminus LIT38_25645 PF00117 Glutamine amidotransferase class-I LIT38_25650 PF05066 HB1, ASXL, restriction endonuclease HTH domain LIT38_25660 PF02310 B12 binding domain LIT38_25660 PF01642 Methylmalonyl-CoA mutase LIT38_25670 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIT38_25670 PF02770 Acyl-CoA dehydrogenase, middle domain LIT38_25670 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIT38_25675 PF02771 Acyl-CoA dehydrogenase, N-terminal domain LIT38_25675 PF02770 Acyl-CoA dehydrogenase, middle domain LIT38_25675 PF00441 Acyl-CoA dehydrogenase, C-terminal domain LIT38_25680 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain LIT38_25680 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain LIT38_25685 PF02803 Thiolase, C-terminal domain LIT38_25685 PF00108 Thiolase, N-terminal domain LIT38_25690 PF02754 Cysteine-rich domain LIT38_25690 PF13183 4Fe-4S dicluster domain LIT38_25695 PF13091 PLD-like domain LIT38_25700 PF03851 UV-endonuclease UvdE LIT38_25705 PF05995 Cysteine dioxygenase type I LIT38_25710 PF00892 EamA-like transporter family LIT38_25720 PF05746 DALR anticodon binding domain LIT38_25720 PF00750 tRNA synthetases class I (R) LIT38_25720 PF03485 Arginyl tRNA synthetase N terminal domain LIT38_25725 PF09148 Domain of unknown function (DUF1934) LIT38_25730 PF00491 Arginase family LIT38_25735 PF17284 Spermidine synthase tetramerisation domain LIT38_25740 PF00905 Penicillin binding protein transpeptidase domain LIT38_25740 PF00912 Transglycosylase LIT38_25745 PF08741 YwhD family LIT38_25750 PF02163 Peptidase family M50 LIT38_25760 PF01361 Tautomerase enzyme LIT38_25770 PF01966 HD domain LIT38_25775 PF07293 Protein of unknown function (DUF1450) LIT38_25785 PF03099 Biotin/lipoate A/B protein ligase family LIT38_25790 PF01515 Phosphate acetyl/butaryl transferase LIT38_25795 PF06778 Chlorite dismutase LIT38_25800 PF09671 Spore coat protein (Spore_GerQ) LIT38_25805 PF04241 Protein of unknown function (DUF423) LIT38_25815 PF03167 Uracil DNA glycosylase superfamily LIT38_25820 PF11181 Heat induced stress protein YflT LIT38_25830 PF00899 ThiF family LIT38_25835 PF02597 ThiS family LIT38_25840 PF02391 MoaE protein LIT38_25845 PF12804 MobA-like NTP transferase domain LIT38_25850 PF08543 Phosphomethylpyrimidine kinase LIT38_25855 PF08830 Protein of unknown function (DUF1806) LIT38_25860 PF02585 GlcNAc-PI de-N-acetylase LIT38_25865 PF01373 Glycosyl hydrolase family 14 LIT38_25865 PF03423 Carbohydrate binding domain (family 25) LIT38_25865 PF00128 Alpha amylase, catalytic domain LIT38_25875 PF13545 Crp-like helix-turn-helix domain LIT38_25875 PF00027 Cyclic nucleotide-binding domain LIT38_25880 PF00005 ABC transporter LIT38_25890 PF00440 Bacterial regulatory proteins, tetR family LIT38_25895 PF07995 Glucose / Sorbosone dehydrogenase LIT38_25915 PF02667 Short chain fatty acid transporter LIT38_25925 PF00005 ABC transporter LIT38_25940 PF07670 Nucleoside recognition LIT38_25955 PF04073 Aminoacyl-tRNA editing domain LIT38_25960 PF00128 Alpha amylase, catalytic domain LIT38_25960 PF16657 Maltogenic Amylase, C-terminal domain LIT38_25970 PF14759 Reductase C-terminal LIT38_25970 PF07992 Pyridine nucleotide-disulphide oxidoreductase LIT38_25985 PF00990 Diguanylate cyclase, GGDEF domain LIT38_25985 PF17156 Gammaproteobacterial periplasmic sensor domain LIT38_25990 PF00854 POT family LIT38_26000 PF04228 Putative neutral zinc metallopeptidase LIT38_26005 PF01266 FAD dependent oxidoreductase LIT38_26015 PF02423 Ornithine cyclodeaminase/mu-crystallin family LIT38_26020 PF07690 Major Facilitator Superfamily LIT38_26020 PF00083 Sugar (and other) transporter LIT38_26025 PF07690 Major Facilitator Superfamily LIT38_26035 PF00085 Thioredoxin LIT38_26040 PF05922 Peptidase inhibitor I9 LIT38_26040 PF00082 Subtilase family LIT38_26045 PF02743 Cache domain LIT38_26045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain LIT38_26045 PF00672 HAMP domain LIT38_26090 PF12833 Helix-turn-helix domain LIT38_26090 PF06445 GyrI-like small molecule binding domain LIT38_26095 PF01381 Helix-turn-helix LIT38_26100 PF06039 Malate:quinone oxidoreductase (Mqo) LIT38_26105 PF00294 pfkB family carbohydrate kinase LIT38_26110 PF08244 Glycosyl hydrolases family 32 C terminal LIT38_26110 PF00251 Glycosyl hydrolases family 32 N-terminal domain LIT38_26115 PF02378 Phosphotransferase system, EIIC LIT38_26115 PF00367 phosphotransferase system, EIIB LIT38_26120 PF00356 Bacterial regulatory proteins, lacI family LIT38_26135 PF10415 Fumarase C C-terminus LIT38_26135 PF00206 Lyase LIT38_26140 PF02805 Metal binding domain of Ada LIT38_26140 PF12833 Helix-turn-helix domain LIT38_26150 PF02652 L-lactate permease LIT38_26155 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain LIT38_26155 PF00056 lactate/malate dehydrogenase, NAD binding domain LIT38_26165 PF01979 Amidohydrolase family LIT38_26170 PF00027 Cyclic nucleotide-binding domain LIT38_26175 PF12832 MFS_1 like family LIT38_26200 PF00324 Amino acid permease LIT38_26225 PF01476 LysM domain LIT38_26230 PF01810 LysE type translocator LIT38_26235 PF00155 Aminotransferase class I and II LIT38_26235 PF00392 Bacterial regulatory proteins, gntR family LIT38_26240 PF02590 Predicted SPOUT methyltransferase LIT38_26250 PF13180 PDZ domain LIT38_26255 PF00753 Metallo-beta-lactamase superfamily LIT38_26260 PF09648 YycH protein LIT38_26265 PF07435 YycH protein LIT38_26270 PF13426 PAS domain LIT38_26270 PF00672 HAMP domain LIT38_26270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase LIT38_26270 PF00512 His Kinase A (phospho-acceptor) domain LIT38_26275 PF00072 Response regulator receiver domain LIT38_26275 PF00486 Transcriptional regulatory protein, C terminal LIT38_26280 PF01476 LysM domain LIT38_26280 PF01551 Peptidase family M23 LIT38_26305 PF00709 Adenylosuccinate synthetase LIT38_26310 PF00772 DnaB-like helicase N terminal domain LIT38_26310 PF03796 DnaB-like helicase C terminal domain LIT38_26315 PF03948 Ribosomal protein L9, C-terminal domain LIT38_26315 PF01281 Ribosomal protein L9, N-terminal domain LIT38_26320 PF02272 DHHA1 domain LIT38_26320 PF01368 DHH family LIT38_26325 PF09991 Predicted membrane protein (DUF2232) LIT38_26330 PF01084 Ribosomal protein S18 LIT38_26335 PF00436 Single-strand binding protein family LIT38_26340 PF01250 Ribosomal protein S6 LIT38_26345 PF01926 50S ribosome-binding GTPase LIT38_26345 PF06071 Protein of unknown function (DUF933) LIT38_26350 PF04879 Molybdopterin oxidoreductase Fe4S4 domain LIT38_26350 PF00384 Molybdopterin oxidoreductase LIT38_26350 PF01568 Molydopterin dinucleotide binding domain LIT38_26355 PF06107 Bacterial protein of unknown function (DUF951) LIT38_26360 PF00924 Mechanosensitive ion channel LIT38_26365 PF06866 Protein of unknown function (DUF1256) LIT38_26375 PF17762 HTH domain found in ParB protein LIT38_26375 PF02195 ParB-like nuclease domain LIT38_26380 PF13614 AAA domain LIT38_26385 PF17762 HTH domain found in ParB protein LIT38_26385 PF02195 ParB-like nuclease domain LIT38_26390 PF02527 rRNA small subunit methyltransferase G LIT38_26395 PF01134 Glucose inhibited division protein A LIT38_26395 PF13932 GidA associated domain LIT38_26400 PF01926 50S ribosome-binding GTPase LIT38_26400 PF12631 MnmE helical domain LIT38_26400 PF10396 GTP-binding protein TrmE N-terminus LIT38_26405 PF14804 Jag N-terminus LIT38_26405 PF01424 R3H domain LIT38_26410 PF02096 60Kd inner membrane protein LIT38_26415 PF00825 Ribonuclease P LIT38_26420 PF00468 Ribosomal protein L34