locus-tag	class	description
LIT38_00010	COG0592	DNA-directed DNA polymerase activity
LIT38_00015	COG2501	S4 domain
LIT38_00020	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
LIT38_00030	COG0187	DNA topoisomerase II activity
LIT38_00035	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
LIT38_00075	COG0516	GMP reductase activity
LIT38_00075	COG0517	IMP dehydrogenase activity
LIT38_00090	COG0311	Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
LIT38_00095	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
LIT38_00105	COG1428	Deoxynucleoside kinase
LIT38_00110	COG1428	Deoxynucleoside kinase
LIT38_00115	COG1388	LysM domain
LIT38_00115	COG3858	chitin binding
LIT38_00120	COG1335	isochorismatase
LIT38_00125	COG0590	tRNA wobble adenosine to inosine editing
LIT38_00135	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
LIT38_00140	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
LIT38_00145	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
LIT38_00190	COG1982	Orn Lys Arg decarboxylase major
LIT38_00195	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
LIT38_00200	COG3870	Protein conserved in bacteria
LIT38_00205	COG1728	Protein conserved in bacteria
LIT38_00210	COG0470	DNA polymerase III
LIT38_00215	COG1774	PSP1 C-terminal conserved region
LIT38_00220	COG4467	Involved in initiation control of chromosome replication
LIT38_00225	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
LIT38_00235	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
LIT38_00240	COG2002	toxin-antitoxin pair type II binding
LIT38_00250	COG0084	hydrolase, TatD family'
LIT38_00255	COG3583	domain protein
LIT38_00255	COG3584	3D domain protein
LIT38_00265	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
LIT38_00275	COG4466	Protein conserved in bacteria
LIT38_00290	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
LIT38_00295	COG0251	oxidation-reduction process
LIT38_00305	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
LIT38_00315	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
LIT38_00330	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
LIT38_00335	COG2002	toxin-antitoxin pair type II binding
LIT38_00340	COG2244	polysaccharide biosynthetic process
LIT38_00345	COG3956	TIGRFAM MazG family protein
LIT38_00350	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
LIT38_00370	COG1098	S1 RNA binding domain
LIT38_00385	COG2208	phosphoserine phosphatase activity
LIT38_00390	COG2304	oxidoreductase activity
LIT38_00395	COG0515	serine threonine protein kinase
LIT38_00405	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
LIT38_00410	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
LIT38_00415	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
LIT38_00420	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
LIT38_00425	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LIT38_00430	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
LIT38_00435	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
LIT38_00440	COG0512	Glutamine amidotransferase of anthranilate synthase
LIT38_00445	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
LIT38_00450	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
LIT38_00455	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
LIT38_00460	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
LIT38_00465	COG1396	sequence-specific DNA binding
LIT38_00470	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LIT38_00475	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
LIT38_00560	COG3880	PFAM UvrB UvrC protein
LIT38_00565	COG3869	Catalyzes the specific phosphorylation of arginine residues in
LIT38_00570	COG0542	response to heat
LIT38_00575	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
LIT38_00580	COG1623	Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c- di-AMP acts as a signaling molecule that couples DNA integrity with progression of sporulation. The rise in c-di-AMP level generated by DisA while scanning the chromosome, operates as a positive signal that advances sporulation
LIT38_00585	COG4956	integral membrane protein (PIN domain superfamily)
LIT38_00600	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
LIT38_00605	COG1045	serine acetyltransferase
LIT38_00610	COG0215	cysteine-tRNA ligase activity
LIT38_00620	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LIT38_00625	COG3688	RNA-binding protein containing a PIN domain
LIT38_00635	COG0267	Belongs to the bacterial ribosomal protein bL33 family
LIT38_00640	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
LIT38_00645	COG0250	Participates in transcription elongation, termination and antitermination
LIT38_00650	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
LIT38_00655	COG0081	regulation of translation
LIT38_00660	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
LIT38_00665	COG0222	ribosome binding
LIT38_00670	COG2813	Specifically methylates the guanine in position
LIT38_00680	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
LIT38_00685	COG1358	cellular component organization or biogenesis
LIT38_00690	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
LIT38_00710	COG0051	transcription antitermination factor activity, RNA binding
LIT38_00715	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
LIT38_00720	COG0088	Forms part of the polypeptide exit tunnel
LIT38_00730	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
LIT38_00735	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
LIT38_00745	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
LIT38_00750	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
LIT38_00765	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
LIT38_00770	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
LIT38_00775	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
LIT38_00790	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
LIT38_00795	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
LIT38_00800	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
LIT38_00805	COG1841	ribosomal large subunit assembly
LIT38_00815	COG0201	protein transport
LIT38_00820	COG0563	adenylate kinase activity
LIT38_00825	COG0024	Methionine aminopeptidase
LIT38_00830	COG2163	COG2163 Ribosomal protein L14E L6E L27E
LIT38_00835	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
LIT38_00840	COG0257	Belongs to the bacterial ribosomal protein bL36 family
LIT38_00845	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
LIT38_00850	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
LIT38_00855	COG0202	RNA polymerase activity
LIT38_00860	COG0203	ribosomal protein L17
LIT38_00865	COG1122	ATPase activity
LIT38_00870	COG1122	ATPase activity
LIT38_00875	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
LIT38_00880	COG0101	tRNA pseudouridine synthase activity
LIT38_00885	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
LIT38_00890	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
LIT38_00905	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
LIT38_00910	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
LIT38_00915	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
LIT38_00925	COG0860	N-Acetylmuramoyl-L-alanine amidase
LIT38_00930	COG0489	protein tyrosine kinase activity
LIT38_00940	COG2194	sulfuric ester hydrolase activity
LIT38_00945	COG0726	polysaccharide deacetylase
LIT38_01030	COG1595	DNA-templated transcription, initiation
LIT38_01035	COG5662	AntiSigma factor
LIT38_01040	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
LIT38_01045	COG4856	YbbR-like protein
LIT38_01050	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
LIT38_01055	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
LIT38_01065	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LIT38_01070	COG4605	iron ion homeostasis
LIT38_01075	COG4604	ABC transporter, ATP-binding protein
LIT38_01080	COG4607	ABC-type enterochelin transport system periplasmic component
LIT38_01085	COG4122	O-methyltransferase activity
LIT38_01090	COG1309	transcriptional regulator
LIT38_01095	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LIT38_01100	COG2814	Major facilitator Superfamily
LIT38_01125	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
LIT38_01135	COG2362	D-Aminopeptidase
LIT38_01140	COG0601	transmembrane transport
LIT38_01145	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LIT38_01150	COG0444	Belongs to the ABC transporter superfamily
LIT38_01155	COG4166	transmembrane transport
LIT38_01160	COG1619	proteins homologs of microcin C7 resistance protein MccF
LIT38_01165	COG4948	Mandelate Racemase Muconate Lactonizing
LIT38_01170	COG0791	NLP P60 protein
LIT38_01175	COG4608	Belongs to the ABC transporter superfamily
LIT38_01185	COG3403	YqcI/YcgG family
LIT38_01195	COG0668	transmembrane transport
LIT38_01205	COG0783	Belongs to the Dps family
LIT38_01215	COG0018	arginyl-trna synthetase
LIT38_01220	COG0772	Belongs to the SEDS family
LIT38_01230	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
LIT38_01235	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LIT38_01240	COG1120	ATPase activity
LIT38_01245	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
LIT38_01255	COG2087	Catalyzes ATP-dependent phosphorylation of adenosylcobinamide and addition of GMP to adenosylcobinamide phosphate
LIT38_01260	COG1492	cobalamin metabolic process
LIT38_01265	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
LIT38_01280	COG2096	Adenosyltransferase
LIT38_01295	COG0406	alpha-ribazole phosphatase activity
LIT38_01305	COG0346	lactoylglutathione lyase activity
LIT38_01310	COG0659	secondary active sulfate transmembrane transporter activity
LIT38_01320	COG1301	dicarboxylic acid transport
LIT38_01325	COG1181	Belongs to the D-alanine--D-alanine ligase family
LIT38_01330	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
LIT38_01340	COG0513	Belongs to the DEAD box helicase family
LIT38_01345	COG4294	response to UV
LIT38_01350	COG3402	PFAM membrane-flanked domain
LIT38_01355	COG3428	Bacterial PH domain
LIT38_01360	COG0705	Rhomboid family
LIT38_01365	COG0736	holo-[acyl-carrier-protein] synthase activity
LIT38_01370	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
LIT38_01380	COG0864	Transcriptional regulator
LIT38_01385	COG2337	Toxic component of a toxin-antitoxin (TA) module
LIT38_01390	COG1366	Belongs to the anti-sigma-factor antagonist family
LIT38_01395	COG1366	Belongs to the anti-sigma-factor antagonist family
LIT38_01400	COG2172	sigma factor antagonist activity
LIT38_01405	COG2208	phosphoserine phosphatase activity
LIT38_01415	COG2172	sigma factor antagonist activity
LIT38_01420	COG1191	sigma factor activity
LIT38_01425	COG2208	phosphoserine phosphatase activity
LIT38_01430	COG2183	response to ionizing radiation
LIT38_01440	COG3091	SprT-like family
LIT38_01540	COG0802	atpase or kinase
LIT38_01545	COG1214	PFAM Peptidase M22, glycoprotease
LIT38_01550	COG0456	acetyltransferase
LIT38_01560	COG0488	(ABC) transporter
LIT38_01565	COG0315	cyclic pyranopterin monophosphate synthase activity
LIT38_01570	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
LIT38_01580	COG1266	CAAX protease self-immunity
LIT38_01585	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
LIT38_01590	COG0459	protein refolding
LIT38_01595	COG0747	negative chemotaxis
LIT38_01600	COG0601	transmembrane transport
LIT38_01605	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LIT38_01615	COG4608	Belongs to the ABC transporter superfamily
LIT38_01620	COG0534	Mate efflux family protein
LIT38_01685	COG4842	Belongs to the WXG100 family
LIT38_01690	COG5417	Belongs to the EsaB family
LIT38_01695	COG4499	WXG100 protein secretion system (Wss), protein YukC
LIT38_01700	COG0433	COG0433 Predicted ATPase
LIT38_01700	COG1674	ftsk spoiiie
LIT38_01705	COG1511	domain protein
LIT38_01760	COG0714	Associated with various cellular activities
LIT38_01765	COG1721	protein (some members contain a von Willebrand factor type A (vWA) domain
LIT38_01770	COG1305	Transglutaminase-like
LIT38_01775	COG0518	GMP synthase (glutamine-hydrolyzing) activity
LIT38_01775	COG0519	Catalyzes the synthesis of GMP from XMP
LIT38_01780	COG2252	PERMEase
LIT38_01785	COG3711	transcriptional antiterminator
LIT38_01790	COG2190	(PTS) system
LIT38_01790	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LIT38_01790	COG1263	PTS System
LIT38_01810	COG4843	Uncharacterized protein conserved in bacteria (DUF2179)
LIT38_01820	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
LIT38_01825	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
LIT38_01830	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
LIT38_01840	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
LIT38_01845	COG0047	phosphoribosylformylglycinamidine synthase activity
LIT38_01855	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
LIT38_01860	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
LIT38_01865	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
LIT38_01870	COG0138	bifunctional purine biosynthesis protein purh
LIT38_01875	COG0151	Belongs to the GarS family
LIT38_01890	COG1470	cell adhesion involved in biofilm formation
LIT38_01895	COG4496	protein, YerC YecD
LIT38_01900	COG1646	35 carbon atoms) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P), producing heptaprenylglyceryl phosphate (HepGP). This reaction is an ether-bond-formation step in the biosynthesis of archaea-type G1P-based membrane lipids found in Bacillales
LIT38_01905	COG0210	DNA helicase
LIT38_01910	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
LIT38_01915	COG4851	CamS sex pheromone cAM373 precursor
LIT38_01920	COG1012	belongs to the aldehyde dehydrogenase family
LIT38_01925	COG1335	isochorismatase
LIT38_01935	COG2224	Isocitrate lyase
LIT38_01940	COG5506	Protein of unknown function (DUF1694)
LIT38_01955	COG0154	amidase activity
LIT38_01960	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
LIT38_01975	COG1227	inorganic diphosphatase activity
LIT38_01985	COG2202	Pas domain
LIT38_01985	COG1366	Belongs to the anti-sigma-factor antagonist family
LIT38_01990	COG2323	membrane
LIT38_01995	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
LIT38_02010	COG1309	transcriptional regulator
LIT38_02015	COG1597	lipid kinase activity
LIT38_02020	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
LIT38_02025	COG5002	protein histidine kinase activity
LIT38_02035	COG4991	sh3 domain protein
LIT38_02040	COG4915	5-bromo-4-chloroindolyl phosphate hydrolysis protein
LIT38_02045	COG3853	Toxic anion resistance protein (TelA)
LIT38_02050	COG5002	protein histidine kinase activity
LIT38_02055	COG0166	Belongs to the GPI family
LIT38_02060	COG0492	ferredoxin-NADP+ reductase activity
LIT38_02065	COG2234	aminopeptidase activity
LIT38_02075	COG0697	spore germination
LIT38_02080	COG2323	membrane
LIT38_02095	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LIT38_02100	COG2310	stress, protein
LIT38_02105	COG0584	glycerophosphoryl diester phosphodiesterase
LIT38_02120	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
LIT38_02130	COG2814	Major facilitator Superfamily
LIT38_02135	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
LIT38_02140	COG0784	Response regulator, receiver
LIT38_02140	COG2198	Histidine kinase
LIT38_02140	COG2205	protein histidine kinase activity
LIT38_02145	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
LIT38_02155	COG0527	aspartate kinase activity
LIT38_02165	COG2814	Major facilitator Superfamily
LIT38_02170	COG0788	formyltetrahydrofolate deformylase activity
LIT38_02185	COG3540	Alkaline phosphatase
LIT38_02190	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
LIT38_02205	COG0861	Integral membrane protein TerC family
LIT38_02250	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
LIT38_02255	COG3738	Protein conserved in bacteria
LIT38_02265	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
LIT38_02270	COG0586	Pfam SNARE associated Golgi protein
LIT38_02280	COG3546	catalase activity
LIT38_02285	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LIT38_02290	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LIT38_02295	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
LIT38_02300	COG1120	ATPase activity
LIT38_02305	COG0492	ferredoxin-NADP+ reductase activity
LIT38_02315	COG2329	Antibiotic biosynthesis monooxygenase
LIT38_02320	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LIT38_02325	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LIT38_02330	COG4977	sequence-specific DNA binding
LIT38_02330	COG1917	Cupin 2, conserved barrel domain protein
LIT38_02355	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LIT38_02365	COG1082	Xylose isomerase domain protein TIM barrel
LIT38_02375	COG1132	(ABC) transporter
LIT38_02380	COG1414	Transcriptional regulator
LIT38_02385	COG1012	belongs to the aldehyde dehydrogenase family
LIT38_02390	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LIT38_02400	COG0179	Fumarylacetoacetate (FAA) hydrolase
LIT38_02410	COG2721	sulfolactate sulfo-lyase activity
LIT38_02420	COG2721	sulfolactate sulfo-lyase activity
LIT38_02455	COG0450	alkyl hydroperoxide reductase
LIT38_02460	COG1695	Transcriptional regulator
LIT38_02470	COG2824	Alkylphosphonate utilization operon protein PhnA
LIT38_02475	COG5002	protein histidine kinase activity
LIT38_02480	COG0656	L-ascorbic acid biosynthetic process
LIT38_02485	COG2814	Major facilitator Superfamily
LIT38_02490	COG1733	regulation of RNA biosynthetic process
LIT38_02625	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
LIT38_02630	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
LIT38_02650	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
LIT38_02665	COG1525	nuclease
LIT38_02665	COG0737	Belongs to the 5'-nucleotidase family
LIT38_02665	COG4085	toxin activity
LIT38_02675	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
LIT38_02680	COG0352	thiamine-phosphate diphosphorylase activity
LIT38_02685	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LIT38_02695	COG2022	thiamine diphosphate biosynthetic process
LIT38_02700	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
LIT38_02705	COG0346	lactoylglutathione lyase activity
LIT38_02715	COG2205	protein histidine kinase activity
LIT38_02720	COG0745	RESPONSE REGULATOR receiver
LIT38_02735	COG3402	PFAM membrane-flanked domain
LIT38_02740	COG3428	Bacterial PH domain
LIT38_02750	COG0745	RESPONSE REGULATOR receiver
LIT38_02755	COG0642	Histidine kinase
LIT38_02785	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
LIT38_02790	COG1136	(ABC) transporter
LIT38_02795	COG0577	efflux transmembrane transporter activity
LIT38_02800	COG5001	Diguanylate cyclase
LIT38_02800	COG3300	MHYT domain
LIT38_02820	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LIT38_02860	COG0778	Nitroreductase
LIT38_02865	COG1846	Transcriptional regulator
LIT38_02870	COG2226	methyltransferase
LIT38_02875	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
LIT38_02880	COG0626	cystathionine gamma-synthase activity
LIT38_02885	COG2154	pterin-4-alpha-carbinolamine dehydratase
LIT38_02890	COG3186	Phenylalanine-4-hydroxylase
LIT38_02895	COG4682	membrane
LIT38_02935	COG0640	Transcriptional regulator
LIT38_02945	COG0456	acetyltransferase
LIT38_02950	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LIT38_02955	COG1393	Belongs to the ArsC family
LIT38_02970	COG3773	Cell wall hydrolase
LIT38_02975	COG0697	spore germination
LIT38_02980	COG1522	sequence-specific DNA binding
LIT38_02990	COG4572	Cation transport regulator
LIT38_03005	COG2310	stress, protein
LIT38_03015	COG2076	Multidrug Resistance protein
LIT38_03020	COG2076	Multidrug Resistance protein
LIT38_03025	COG2312	Erythromycin esterase
LIT38_03035	COG0861	Integral membrane protein TerC family
LIT38_03040	COG4213	ABC transporter substrate-binding protein
LIT38_03050	COG1172	Belongs to the binding-protein-dependent transport system permease family
LIT38_03060	COG2972	Histidine kinase
LIT38_03065	COG4753	response regulator
LIT38_03065	COG2207	Transcriptional regulator
LIT38_03070	COG4213	ABC transporter substrate-binding protein
LIT38_03085	COG3340	Belongs to the peptidase S51 family
LIT38_03105	COG0456	acetyltransferase
LIT38_03105	COG1846	Transcriptional regulator
LIT38_03115	COG1940	carbohydrate kinase activity
LIT38_03125	COG0110	maltose O-acetyltransferase activity
LIT38_03130	COG0583	DNA-binding transcription factor activity
LIT38_03145	COG3949	Membrane
LIT38_03150	COG1473	amidohydrolase
LIT38_03155	COG2860	membrane
LIT38_03170	COG2367	Beta-lactamase
LIT38_03175	COG0584	glycerophosphoryl diester phosphodiesterase
LIT38_03190	COG1473	amidohydrolase
LIT38_03200	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
LIT38_03220	COG3706	GGDEF domain
LIT38_03225	COG0640	Transcriptional regulator
LIT38_03230	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
LIT38_03235	COG5002	protein histidine kinase activity
LIT38_03240	COG0745	RESPONSE REGULATOR receiver
LIT38_03245	COG0666	response to abiotic stimulus
LIT38_03265	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
LIT38_03285	COG0494	nUDIX hydrolase
LIT38_03310	COG1595	DNA-templated transcription, initiation
LIT38_03340	COG2070	2-Nitropropane dioxygenase
LIT38_03345	COG0412	Dienelactone hydrolase
LIT38_03355	COG1301	dicarboxylic acid transport
LIT38_03390	COG3010	Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N-acetylglucosamine-6-phosphate (GlcNAc-6-P)
LIT38_03400	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LIT38_03405	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
LIT38_03420	COG0725	ABC transporter, periplasmic molybdate-binding protein
LIT38_03430	COG1131	(ABC) transporter
LIT38_03445	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LIT38_03450	COG0456	acetyltransferase
LIT38_03455	COG3443	Belongs to the bacterial solute-binding protein 9 family
LIT38_03455	COG0803	Belongs to the bacterial solute-binding protein 9 family
LIT38_03460	COG0789	Transcriptional regulator
LIT38_03465	COG1064	alcohol dehydrogenase
LIT38_03475	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
LIT38_03490	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LIT38_03510	COG0640	Transcriptional regulator
LIT38_03515	COG0346	lactoylglutathione lyase activity
LIT38_03520	COG3583	domain protein
LIT38_03520	COG3584	3D domain protein
LIT38_03525	COG0346	lactoylglutathione lyase activity
LIT38_03530	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LIT38_03535	COG0477	Major facilitator Superfamily
LIT38_03540	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LIT38_03555	COG2329	Antibiotic biosynthesis monooxygenase
LIT38_03590	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LIT38_03600	COG3383	formate dehydrogenase (NAD+) activity
LIT38_03605	COG2427	Protein of unknown function (DUF1641)
LIT38_03610	COG3223	Belongs to the PsiE family
LIT38_03615	COG5609	conserved protein (DUF2294)
LIT38_03620	COG2329	Antibiotic biosynthesis monooxygenase
LIT38_03640	COG4974	Belongs to the 'phage' integrase family
LIT38_03655	COG3708	Transcriptional regulator
LIT38_03655	COG2207	Transcriptional regulator
LIT38_03665	COG2318	DinB family
LIT38_03675	COG0693	protein deglycase activity
LIT38_03685	COG0456	acetyltransferase
LIT38_03690	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LIT38_03695	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
LIT38_03715	COG0346	lactoylglutathione lyase activity
LIT38_03730	COG3973	AAA domain
LIT38_03735	COG2814	Major facilitator Superfamily
LIT38_03740	COG0167	dihydroorotate dehydrogenase activity
LIT38_03745	COG1840	ABC-type Fe3 transport system, periplasmic component
LIT38_03755	COG3842	ATPase activity
LIT38_03760	COG1846	Transcriptional regulator
LIT38_03765	COG0456	acetyltransferase
LIT38_03770	COG2808	Putative FMN-binding domain
LIT38_03795	COG1733	regulation of RNA biosynthetic process
LIT38_03800	COG2249	NAD(P)H dehydrogenase (quinone) activity
LIT38_03815	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LIT38_03820	COG1404	Belongs to the peptidase S8 family
LIT38_03825	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
LIT38_03855	COG0456	acetyltransferase
LIT38_03865	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
LIT38_03895	COG3813	Protein conserved in bacteria
LIT38_03900	COG1335	isochorismatase
LIT38_03905	COG1522	sequence-specific DNA binding
LIT38_03920	COG2318	DinB family
LIT38_03970	COG1131	(ABC) transporter
LIT38_03975	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
LIT38_04000	COG1683	Conserved Protein
LIT38_04005	COG2318	DinB family
LIT38_04020	COG0668	transmembrane transport
LIT38_04080	COG0702	epimerase
LIT38_04135	COG0305	Participates in initiation and elongation during chromosome replication
LIT38_04150	COG0697	spore germination
LIT38_04165	COG2391	methyltransferase activity
LIT38_04170	COG2936	dipeptidyl-peptidase activity
LIT38_04180	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
LIT38_04190	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
LIT38_04195	COG2169	Transcriptional regulator
LIT38_04200	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
LIT38_04210	COG2207	Transcriptional regulator
LIT38_04210	COG0662	Cupin 2, conserved barrel domain protein
LIT38_04215	COG0697	spore germination
LIT38_04225	COG2814	Major facilitator Superfamily
LIT38_04250	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
LIT38_04255	COG1122	ATPase activity
LIT38_04260	COG1126	abc transporter atp-binding protein
LIT38_04280	COG0745	RESPONSE REGULATOR receiver
LIT38_04285	COG2205	protein histidine kinase activity
LIT38_04290	COG1136	(ABC) transporter
LIT38_04295	COG0577	efflux transmembrane transporter activity
LIT38_04305	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
LIT38_04310	COG1210	Utp--glucose-1-phosphate uridylyltransferase
LIT38_04320	COG0463	Glycosyl transferase, family 2
LIT38_04340	COG1278	Cold shock
LIT38_04345	COG4978	Transcriptional regulator
LIT38_04345	COG0789	Transcriptional regulator
LIT38_04350	COG2814	Major facilitator Superfamily
LIT38_04380	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
LIT38_04385	COG1902	pentaerythritol trinitrate reductase activity
LIT38_04415	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LIT38_04420	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LIT38_04425	COG0577	efflux transmembrane transporter activity
LIT38_04430	COG1136	(ABC) transporter
LIT38_04435	COG1309	transcriptional regulator
LIT38_04440	COG3844	kynureninase activity
LIT38_04455	COG0733	neurotransmitter:sodium symporter activity
LIT38_04460	COG1366	Belongs to the anti-sigma-factor antagonist family
LIT38_04470	COG2155	Conserved Protein
LIT38_04475	COG0501	Belongs to the peptidase M48B family
LIT38_04495	COG0577	efflux transmembrane transporter activity
LIT38_04500	COG1136	(ABC) transporter
LIT38_04505	COG5505	Protein of unknown function (DUF819)
LIT38_04510	COG2233	PERMEase
LIT38_04520	COG0318	PFAM AMP-dependent synthetase and ligase
LIT38_04545	COG0789	Transcriptional regulator
LIT38_04565	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LIT38_04590	COG3135	benzoate transporter
LIT38_04595	COG3835	regulator
LIT38_04625	COG1247	-acetyltransferase
LIT38_04630	COG2358	TRAP transporter, solute receptor (TAXI family
LIT38_04640	COG1802	Transcriptional regulator
LIT38_04645	COG0277	FAD linked oxidase domain protein
LIT38_04650	COG0247	lactate metabolic process
LIT38_04655	COG0579	oxidoreductase
LIT38_04670	COG3279	Response regulator of the LytR AlgR family
LIT38_04675	COG0427	acetyl-CoA hydrolase
LIT38_04680	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
LIT38_04685	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
LIT38_04690	COG3290	protein histidine kinase activity
LIT38_04695	COG4565	transcriptional regulatory protein
LIT38_04700	COG1301	dicarboxylic acid transport
LIT38_04705	COG2271	Major facilitator Superfamily
LIT38_04710	COG1366	Belongs to the anti-sigma-factor antagonist family
LIT38_04725	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LIT38_04740	COG0588	phosphoglycerate mutase activity
LIT38_04745	COG5002	protein histidine kinase activity
LIT38_04760	COG0693	protein deglycase activity
LIT38_04760	COG0753	catalase activity
LIT38_04765	COG2207	Transcriptional regulator
LIT38_04765	COG3708	Transcriptional regulator
LIT38_04770	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
LIT38_04775	COG2318	DinB family
LIT38_04785	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
LIT38_04810	COG2176	DNA-directed DNA polymerase activity
LIT38_04815	COG5002	protein histidine kinase activity
LIT38_04820	COG4895	conserved protein (DUF2196)
LIT38_04835	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
LIT38_04840	COG1966	Carbon starvation protein
LIT38_04850	COG3275	phosphorelay sensor kinase activity
LIT38_04865	COG1443	Catalyzes the 1,3-allylic rearrangement of the homoallylic substrate isopentenyl (IPP) to its highly electrophilic allylic isomer, dimethylallyl diphosphate (DMAPP)
LIT38_04880	COG0024	Methionine aminopeptidase
LIT38_04890	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
LIT38_04895	COG0604	alcohol dehydrogenase
LIT38_04900	COG2706	6-phosphogluconolactonase activity
LIT38_04915	COG1366	Belongs to the anti-sigma-factor antagonist family
LIT38_04925	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
LIT38_04940	COG0446	pyridine nucleotide-disulphide oxidoreductase
LIT38_04950	COG2814	Major facilitator Superfamily
LIT38_04955	COG1115	amino acid carrier protein
LIT38_04965	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
LIT38_04970	COG0805	protein transport
LIT38_04980	COG1063	alcohol dehydrogenase
LIT38_04985	COG5002	protein histidine kinase activity
LIT38_04990	COG0737	Belongs to the 5'-nucleotidase family
LIT38_05000	COG0513	Belongs to the DEAD box helicase family
LIT38_05005	COG0154	amidase activity
LIT38_05010	COG0723	plastoquinol--plastocyanin reductase activity
LIT38_05010	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LIT38_05020	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
LIT38_05025	COG0697	spore germination
LIT38_05035	COG0626	cystathionine gamma-synthase activity
LIT38_05060	COG2720	vancomycin resistance protein
LIT38_05065	COG1657	PFAM Prenyltransferase squalene oxidase
LIT38_05070	COG1994	Peptidase M50
LIT38_05080	COG1842	Phage shock protein A
LIT38_05095	COG2197	response regulator
LIT38_05105	COG0488	(ABC) transporter
LIT38_05115	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
LIT38_05120	COG3314	Sporulation integral membrane protein YlbJ
LIT38_05125	COG2244	polysaccharide biosynthetic process
LIT38_05140	COG0598	Magnesium transport protein CorA
LIT38_05155	COG1607	acyl-coa hydrolase
LIT38_05165	COG0405	Gamma-glutamyltransferase
LIT38_05185	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LIT38_05190	COG0312	modulator of DNA gyrase
LIT38_05195	COG0312	modulator of DNA gyrase
LIT38_05200	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LIT38_05215	COG0805	protein transport
LIT38_05220	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
LIT38_05240	COG0670	Belongs to the BI1 family
LIT38_05245	COG1970	mechanosensitive ion channel activity
LIT38_05260	COG4145	pantothenate transmembrane transporter activity
LIT38_05270	COG2309	aminopeptidase activity
LIT38_05285	COG1366	Belongs to the anti-sigma-factor antagonist family
LIT38_05290	COG2986	histidine ammonia-lyase
LIT38_05320	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
LIT38_05325	COG1360	Flagellar Motor Protein
LIT38_05330	COG2814	Major facilitator Superfamily
LIT38_05335	COG1846	Transcriptional regulator
LIT38_05340	COG1115	amino acid carrier protein
LIT38_05345	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LIT38_05345	COG1522	sequence-specific DNA binding
LIT38_05350	COG2313	pseudouridylate synthase activity
LIT38_05355	COG3764	Sortase (surface protein transpeptidase)
LIT38_05370	COG0681	Belongs to the peptidase S26 family
LIT38_05400	COG1396	sequence-specific DNA binding
LIT38_05405	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
LIT38_05410	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LIT38_05415	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
LIT38_05420	COG2188	Transcriptional regulator
LIT38_05425	COG0693	protein deglycase activity
LIT38_05430	COG4840	Belongs to the UPF0435 family
LIT38_05440	COG1295	ribonuclease BN
LIT38_05445	COG2217	Heavy metal translocating P-type atpase
LIT38_05450	COG0477	Major facilitator Superfamily
LIT38_05465	COG1960	acyl-CoA dehydrogenase activity
LIT38_05470	COG0387	Pfam Sodium calcium exchanger
LIT38_05480	COG0535	radical SAM domain protein
LIT38_05490	COG0405	Gamma-glutamyltransferase
LIT38_05510	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
LIT38_05515	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
LIT38_05555	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LIT38_05565	COG0397	Uncharacterized ACR, YdiU/UPF0061 family
LIT38_05580	COG2764	glyoxalase bleomycin resistance protein dioxygenase
LIT38_05595	COG0386	Belongs to the glutathione peroxidase family
LIT38_05605	COG2186	Transcriptional regulator
LIT38_05610	COG1620	l-lactate permease
LIT38_05615	COG0247	lactate metabolic process
LIT38_05620	COG1139	Iron-sulfur cluster binding protein
LIT38_05625	COG1556	Lactate utilization protein
LIT38_05635	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
LIT38_05645	COG3189	MarR family transcriptional regulator
LIT38_05650	COG0402	S-adenosylhomocysteine deaminase activity
LIT38_05655	COG0402	S-adenosylhomocysteine deaminase activity
LIT38_05660	COG0747	negative chemotaxis
LIT38_05665	COG0402	S-adenosylhomocysteine deaminase activity
LIT38_05670	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
LIT38_05675	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LIT38_05680	COG3257	ureidoglycine aminohydrolase activity
LIT38_05700	COG3275	phosphorelay sensor kinase activity
LIT38_05705	COG4608	Belongs to the ABC transporter superfamily
LIT38_05710	COG0444	Belongs to the ABC transporter superfamily
LIT38_05715	COG0601	transmembrane transport
LIT38_05720	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LIT38_05725	COG0747	negative chemotaxis
LIT38_05730	COG0402	S-adenosylhomocysteine deaminase activity
LIT38_05735	COG0402	S-adenosylhomocysteine deaminase activity
LIT38_05740	COG0666	response to abiotic stimulus
LIT38_05765	COG0069	glutamate synthase activity
LIT38_05770	COG0702	epimerase
LIT38_05790	COG2508	Transcriptional regulator
LIT38_05795	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LIT38_05800	COG0506	proline dehydrogenase activity
LIT38_05805	COG0683	leucine binding
LIT38_05830	COG0584	glycerophosphoryl diester phosphodiesterase
LIT38_05835	COG1132	(ABC) transporter
LIT38_05840	COG1132	(ABC) transporter
LIT38_05845	COG2304	oxidoreductase activity
LIT38_05850	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LIT38_05870	COG1090	epimerase
LIT38_05880	COG4221	oxidoreductase activity
LIT38_05905	COG1988	membrane-bound metal-dependent
LIT38_05910	COG1194	a g-specific adenine glycosylase
LIT38_05920	COG1028	Short-chain dehydrogenase reductase Sdr
LIT38_05940	COG1132	(ABC) transporter
LIT38_05945	COG0444	Belongs to the ABC transporter superfamily
LIT38_05950	COG4608	Belongs to the ABC transporter superfamily
LIT38_05955	COG0747	negative chemotaxis
LIT38_05960	COG0601	transmembrane transport
LIT38_05965	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LIT38_05970	COG4129	membrane
LIT38_05975	COG0067	glutamate synthase
LIT38_05975	COG0069	glutamate synthase activity
LIT38_05975	COG0070	glutamate synthase
LIT38_05985	COG4555	ABC transporter
LIT38_06005	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
LIT38_06020	COG0735	belongs to the Fur family
LIT38_06150	COG2972	Histidine kinase
LIT38_06155	COG4753	response regulator
LIT38_06155	COG2207	Transcriptional regulator
LIT38_06165	COG0673	inositol 2-dehydrogenase activity
LIT38_06170	COG0673	inositol 2-dehydrogenase activity
LIT38_06185	COG3382	B3 4 domain protein
LIT38_06190	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
LIT38_06200	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
LIT38_06205	COG0778	Nitroreductase
LIT38_06210	COG2766	serine protein kinase
LIT38_06225	COG2718	Belongs to the UPF0229 family
LIT38_06240	COG0460	homoserine dehydrogenase
LIT38_06250	COG0475	glutathione-regulated potassium exporter activity
LIT38_06255	COG2094	Belongs to the DNA glycosylase MPG family
LIT38_06260	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
LIT38_06265	COG1823	symporter activity
LIT38_06270	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
LIT38_06275	COG2252	PERMEase
LIT38_06280	COG4187	Peptidase family M20/M25/M40
LIT38_06285	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LIT38_06290	COG1737	Transcriptional regulator
LIT38_06295	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
LIT38_06300	COG2610	gluconate transmembrane transporter activity
LIT38_06305	COG1070	Carbohydrate kinase
LIT38_06310	COG0306	phosphate transporter
LIT38_06315	COG1392	Phosphate transport regulator
LIT38_06325	COG5566	PFAM Mor transcription activator
LIT38_06330	COG3973	AAA domain
LIT38_06335	COG0656	L-ascorbic acid biosynthetic process
LIT38_06340	COG2261	transglycosylase associated protein
LIT38_06345	COG0564	pseudouridine synthase activity
LIT38_06355	COG3118	belongs to the thioredoxin family
LIT38_06360	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
LIT38_06365	COG3153	acetyltransferase
LIT38_06365	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LIT38_06370	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
LIT38_06375	COG2203	Gaf domain
LIT38_06375	COG4585	Histidine kinase
LIT38_06380	COG2197	response regulator
LIT38_06400	COG0745	RESPONSE REGULATOR receiver
LIT38_06405	COG3850	Histidine kinase
LIT38_06405	COG5002	protein histidine kinase activity
LIT38_06420	COG2719	SpoVR family
LIT38_06425	COG1937	Protein conserved in bacteria
LIT38_06430	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LIT38_06435	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LIT38_06440	COG2210	Belongs to the sulfur carrier protein TusA family
LIT38_06445	COG0425	Belongs to the sulfur carrier protein TusA family
LIT38_06445	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LIT38_06450	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LIT38_06450	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LIT38_06455	COG0425	Belongs to the sulfur carrier protein TusA family
LIT38_06460	COG0730	response to heat
LIT38_06465	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
LIT38_06470	COG1295	ribonuclease BN
LIT38_06480	COG2252	PERMEase
LIT38_06490	COG0640	Transcriptional regulator
LIT38_06500	COG0745	RESPONSE REGULATOR receiver
LIT38_06505	COG5002	protein histidine kinase activity
LIT38_06505	COG3850	Histidine kinase
LIT38_06510	COG1253	flavin adenine dinucleotide binding
LIT38_06525	COG1253	flavin adenine dinucleotide binding
LIT38_06530	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LIT38_06535	COG3852	Histidine kinase
LIT38_06550	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LIT38_06565	COG2814	Major facilitator Superfamily
LIT38_06570	COG1595	DNA-templated transcription, initiation
LIT38_06590	COG0393	Putative heavy-metal-binding
LIT38_06600	COG1132	(ABC) transporter
LIT38_06605	COG1132	(ABC) transporter
LIT38_06625	COG3842	ATPase activity
LIT38_06630	COG2508	Transcriptional regulator
LIT38_06635	COG1937	Protein conserved in bacteria
LIT38_06655	COG0189	ligase activity
LIT38_06660	COG0189	ligase activity
LIT38_06665	COG0189	ligase activity
LIT38_06670	COG0189	ligase activity
LIT38_06680	COG3679	Belongs to the UPF0342 family
LIT38_06695	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
LIT38_06700	COG1122	ATPase activity
LIT38_06705	COG4721	ABC-type cobalt transport system, permease component
LIT38_06715	COG0561	phosphatase activity
LIT38_06720	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LIT38_06725	COG0318	PFAM AMP-dependent synthetase and ligase
LIT38_06730	COG1024	Enoyl-CoA hydratase
LIT38_06740	COG4152	abc transporter atp-binding protein
LIT38_06745	COG1668	transmembrane transport
LIT38_06750	COG1280	lysine exporter protein (LysE YggA)
LIT38_06755	COG0420	3'-5' exonuclease activity
LIT38_06760	COG4717	serine-type aminopeptidase activity
LIT38_06765	COG1380	Effector of murein hydrolase LrgA
LIT38_06770	COG1346	cytolysis
LIT38_06775	COG3481	metal-dependent phosphohydrolase, HD sub domain
LIT38_06785	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LIT38_06810	COG1846	Transcriptional regulator
LIT38_06830	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
LIT38_06835	COG0537	adenosine 5'-monophosphoramidase activity
LIT38_06840	COG1131	(ABC) transporter
LIT38_06845	COG4473	ABC transporter
LIT38_06855	COG1473	amidohydrolase
LIT38_06860	COG0671	phosphoesterase, PA-phosphatase related
LIT38_06865	COG3069	C4-dicarboxylate transmembrane transporter activity
LIT38_06875	COG4585	Histidine kinase
LIT38_06880	COG2197	response regulator
LIT38_06885	COG2329	Antibiotic biosynthesis monooxygenase
LIT38_06890	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
LIT38_06895	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
LIT38_06900	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
LIT38_06905	COG1309	transcriptional regulator
LIT38_06910	COG1511	domain protein
LIT38_06920	COG1234	tRNA 3'-trailer cleavage
LIT38_06925	COG0095	Lipoate-protein ligase
LIT38_06930	COG0318	PFAM AMP-dependent synthetase and ligase
LIT38_06935	COG1024	Enoyl-CoA hydratase
LIT38_06950	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
LIT38_06955	COG1396	sequence-specific DNA binding
LIT38_06960	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
LIT38_06970	COG0501	Belongs to the peptidase M48B family
LIT38_06985	COG4903	ComK protein
LIT38_06995	COG4946	Tricorn protease homolog
LIT38_06995	COG1506	peptidase
LIT38_06995	COG0823	Involved in the tonB-independent uptake of proteins
LIT38_07000	COG1316	TRANSCRIPTIONal
LIT38_07005	COG0398	Pfam SNARE associated Golgi protein
LIT38_07020	COG1028	Short-chain dehydrogenase reductase Sdr
LIT38_07025	COG0183	Belongs to the thiolase family
LIT38_07035	COG2814	Major facilitator Superfamily
LIT38_07040	COG3857	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
LIT38_07050	COG1403	HNH endonuclease
LIT38_07085	COG0318	PFAM AMP-dependent synthetase and ligase
LIT38_07090	COG2311	Membrane
LIT38_07095	COG0179	Fumarylacetoacetate (FAA) hydrolase
LIT38_07105	COG3300	MHYT domain
LIT38_07105	COG5001	Diguanylate cyclase
LIT38_07115	COG0367	asparagine synthase
LIT38_07120	COG0534	Mate efflux family protein
LIT38_07130	COG2182	Extracellular solute-binding protein
LIT38_07135	COG1175	transmembrane transport
LIT38_07140	COG3833	ABC-type maltose transport systems, permease component
LIT38_07145	COG1874	Beta-galactosidase
LIT38_07145	COG0366	Alpha amylase catalytic
LIT38_07150	COG1609	Transcriptional regulator
LIT38_07155	COG1028	Short-chain dehydrogenase reductase Sdr
LIT38_07165	COG4585	Histidine kinase
LIT38_07175	COG1404	Belongs to the peptidase S8 family
LIT38_07180	COG4978	Transcriptional regulator
LIT38_07180	COG0789	Transcriptional regulator
LIT38_07185	COG0531	amino acid
LIT38_07190	COG1012	belongs to the aldehyde dehydrogenase family
LIT38_07225	COG3842	ATPase activity
LIT38_07230	COG1349	DNA-binding transcription factor activity
LIT38_07235	COG0561	phosphatase activity
LIT38_07245	COG2076	Multidrug Resistance protein
LIT38_07255	COG1666	GTP binding
LIT38_07260	COG2996	Protein conserved in bacteria
LIT38_07270	COG1307	EDD domain protein, DegV family
LIT38_07275	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
LIT38_07295	COG0561	phosphatase activity
LIT38_07300	COG1073	alpha beta
LIT38_07305	COG2151	metal-sulfur cluster biosynthetic enzyme
LIT38_07310	COG0535	radical SAM domain protein
LIT38_07315	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LIT38_07320	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
LIT38_07325	COG2846	Di-iron-containing protein involved in the repair of iron-sulfur clusters
LIT38_07330	COG0303	'Molybdopterin
LIT38_07335	COG1763	Mo-molybdopterin cofactor biosynthetic process
LIT38_07345	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
LIT38_07350	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
LIT38_07355	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
LIT38_07365	COG0505	Belongs to the CarA family
LIT38_07375	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
LIT38_07400	COG2267	carboxylic ester hydrolase activity
LIT38_07410	COG1744	ABC transporter substrate-binding protein PnrA-like
LIT38_07430	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LIT38_07435	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
LIT38_07440	COG5504	Zn-dependent protease
LIT38_07445	COG0444	Belongs to the ABC transporter superfamily
LIT38_07450	COG4608	Belongs to the ABC transporter superfamily
LIT38_07460	COG0601	transmembrane transport
LIT38_07465	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LIT38_07480	COG0180	Tryptophanyl-tRNA synthetase
LIT38_07485	COG4166	transmembrane transport
LIT38_07490	COG0601	transmembrane transport
LIT38_07495	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LIT38_07500	COG0444	Belongs to the ABC transporter superfamily
LIT38_07505	COG4608	Belongs to the ABC transporter superfamily
LIT38_07520	COG0456	acetyltransferase
LIT38_07525	COG1393	Belongs to the ArsC family
LIT38_07530	COG4862	establishment of competence for transformation
LIT38_07540	COG1164	Oligoendopeptidase f
LIT38_07545	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
LIT38_07550	COG2346	COG2346, Truncated hemoglobins
LIT38_07555	COG0741	lytic transglycosylase activity
LIT38_07560	COG4116	CYTH
LIT38_07570	COG2357	RelA SpoT domain protein
LIT38_07580	COG0564	pseudouridine synthase activity
LIT38_07585	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
LIT38_07590	COG2239	Acts as a magnesium transporter
LIT38_07595	COG0569	domain protein
LIT38_07595	COG0475	glutathione-regulated potassium exporter activity
LIT38_07600	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
LIT38_07630	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LIT38_07650	COG0210	DNA helicase
LIT38_07660	COG2323	membrane
LIT38_07665	COG2153	protein acetylation
LIT38_07670	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
LIT38_07675	COG2382	esterase
LIT38_07680	COG2358	TRAP transporter, solute receptor (TAXI family
LIT38_07710	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LIT38_07720	COG0506	proline dehydrogenase activity
LIT38_07735	COG1263	PTS System
LIT38_07735	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LIT38_07735	COG2190	(PTS) system
LIT38_07740	COG1012	belongs to the aldehyde dehydrogenase family
LIT38_07750	COG1414	Transcriptional regulator
LIT38_07770	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
LIT38_07780	COG1942	4-Oxalocrotonate Tautomerase
LIT38_07785	COG3885	ferrous iron binding
LIT38_07785	COG2078	PFAM AMMECR1 domain protein
LIT38_07790	COG0583	DNA-binding transcription factor activity
LIT38_07800	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
LIT38_07810	COG1414	Transcriptional regulator
LIT38_07820	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
LIT38_07840	COG5517	Aromatic-ring-hydroxylating dioxygenase beta subunit
LIT38_07850	COG3314	Sporulation integral membrane protein YlbJ
LIT38_07860	COG4948	Mandelate Racemase Muconate Lactonizing
LIT38_07875	COG0004	ammonium transporteR
LIT38_07885	COG2176	DNA-directed DNA polymerase activity
LIT38_07905	COG3871	stress protein (general stress protein 26)
LIT38_07920	COG1966	Carbon starvation protein
LIT38_07930	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
LIT38_07935	COG0584	glycerophosphoryl diester phosphodiesterase
LIT38_07945	COG1585	Membrane protein implicated in regulation of membrane protease activity
LIT38_07950	COG2268	Band 7 protein
LIT38_07965	COG0488	(ABC) transporter
LIT38_07970	COG1404	Belongs to the peptidase S8 family
LIT38_07970	COG4412	M6 family metalloprotease domain protein
LIT38_07990	COG1175	transmembrane transport
LIT38_07995	COG0395	ABC-type sugar transport system, permease component
LIT38_08005	COG0084	hydrolase, TatD family'
LIT38_08010	COG1116	anion transmembrane transporter activity
LIT38_08015	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LIT38_08025	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LIT38_08030	COG3339	Conserved Protein
LIT38_08035	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
LIT38_08040	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
LIT38_08045	COG1263	PTS System
LIT38_08045	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LIT38_08050	COG0366	Alpha amylase catalytic
LIT38_08055	COG0366	Alpha amylase catalytic
LIT38_08060	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
LIT38_08070	COG1988	membrane-bound metal-dependent
LIT38_08075	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
LIT38_08080	COG1757	Na H antiporter
LIT38_08085	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LIT38_08100	COG1191	sigma factor activity
LIT38_08115	COG0247	lactate metabolic process
LIT38_08120	COG0277	FAD linked oxidase domain protein
LIT38_08125	COG3835	regulator
LIT38_08130	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
LIT38_08155	COG0247	lactate metabolic process
LIT38_08160	COG1139	Iron-sulfur cluster binding protein
LIT38_08165	COG1556	Lactate utilization protein
LIT38_08175	COG3594	Acyltransferase
LIT38_08180	COG0840	transmembrane signaling receptor activity
LIT38_08185	COG5002	protein histidine kinase activity
LIT38_08190	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
LIT38_08195	COG0640	Transcriptional regulator
LIT38_08200	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LIT38_08205	COG0436	Aminotransferase
LIT38_08210	COG1850	ribulose-bisphosphate carboxylase activity
LIT38_08215	COG4359	Dephosphorylates 2-hydroxy-3-keto-5-methylthiopentenyl- 1-phosphate (HK-MTPenyl-1-P) yielding 1,2-dihydroxy-3-keto-5- methylthiopentene (DHK-MTPene)
LIT38_08220	COG0235	Class ii aldolase
LIT38_08225	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
LIT38_08240	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
LIT38_08260	COG2223	nitrite transmembrane transporter activity
LIT38_08265	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
LIT38_08270	COG3852	Histidine kinase
LIT38_08275	COG0737	Belongs to the 5'-nucleotidase family
LIT38_08280	COG1846	Transcriptional regulator
LIT38_08295	COG0542	response to heat
LIT38_08300	COG3949	Membrane
LIT38_08320	COG4873	Protein conserved in bacteria
LIT38_08330	COG1028	Short-chain dehydrogenase reductase Sdr
LIT38_08335	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
LIT38_08340	COG0390	transport system, permease component
LIT38_08360	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
LIT38_08370	COG2084	Dehydrogenase
LIT38_08380	COG0436	Aminotransferase
LIT38_08390	COG1714	RDD family
LIT38_08400	COG2270	Major facilitator Superfamily
LIT38_08405	COG0784	Response regulator, receiver
LIT38_08405	COG0835	chemotaxis
LIT38_08425	COG1376	ErfK ybiS ycfS ynhG family protein
LIT38_08430	COG1408	metallophosphoesterase
LIT38_08435	COG1028	Short-chain dehydrogenase reductase Sdr
LIT38_08445	COG2200	EAL domain
LIT38_08470	COG4703	Protein of unknown function (DUF1797)
LIT38_08485	COG0517	IMP dehydrogenase activity
LIT38_08490	COG0477	Major facilitator Superfamily
LIT38_08495	COG0583	DNA-binding transcription factor activity
LIT38_08500	COG2171	N-acyltransferase activity
LIT38_08505	COG1473	amidohydrolase
LIT38_08510	COG0668	transmembrane transport
LIT38_08515	COG1132	(ABC) transporter
LIT38_08520	COG1132	(ABC) transporter
LIT38_08525	COG0569	domain protein
LIT38_08530	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
LIT38_08540	COG0561	phosphatase activity
LIT38_08555	COG0497	DNA recombination
LIT38_08565	COG0022	dehydrogenase e1 component
LIT38_08570	COG0508	dehydrogenase complex catalyzes the overall conversion of
LIT38_08590	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
LIT38_08615	COG1982	Orn Lys Arg decarboxylase major
LIT38_08625	COG4476	Belongs to the UPF0223 family
LIT38_08630	COG4493	Belongs to the UPF0637 family
LIT38_08640	COG0483	inositol monophosphate 1-phosphatase activity
LIT38_08655	COG1217	gtp-binding protein TYPA
LIT38_08670	COG4896	Protein conserved in bacteria
LIT38_08685	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
LIT38_08690	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
LIT38_08695	COG4838	Belongs to the UPF0358 family
LIT38_08700	COG0772	Belongs to the SEDS family
LIT38_08705	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
LIT38_08710	COG1612	heme a metabolic process
LIT38_08740	COG3336	cytochrome c oxidase
LIT38_08755	COG0628	permease
LIT38_08775	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
LIT38_08780	COG2340	Cysteine-rich secretory protein family
LIT38_08810	COG3679	Belongs to the UPF0342 family
LIT38_08815	COG4471	UPF0298 protein
LIT38_08835	COG0742	ribosomal rna small subunit methyltransferase
LIT38_08840	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
LIT38_08845	COG3314	Sporulation integral membrane protein YlbJ
LIT38_08850	COG1752	Esterase of the alpha-beta hydrolase superfamily
LIT38_08855	COG3480	Lon protease (S16) C-terminal proteolytic domain
LIT38_08860	COG1323	Belongs to the UPF0348 family
LIT38_08865	COG1399	metal-binding, possibly nucleic acid-binding protein
LIT38_08870	COG0333	Belongs to the bacterial ribosomal protein bL32 family
LIT38_08875	COG1024	Enoyl-CoA hydratase
LIT38_08885	COG0454	-acetyltransferase
LIT38_08890	COG0439	Biotin carboxylase
LIT38_08895	COG0511	ligase activity, forming carbon-carbon bonds
LIT38_08900	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
LIT38_08905	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
LIT38_08915	COG4365	Involved in bacillithiol (BSH) biosynthesis. May catalyze the last step of the pathway, the addition of cysteine to glucosamine malate (GlcN-Mal) to generate BSH
LIT38_08920	COG2001	Belongs to the MraZ family
LIT38_08925	COG0275	rRNA processing
LIT38_08935	COG0768	penicillin binding
LIT38_08940	COG0768	penicillin binding
LIT38_08945	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
LIT38_08955	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
LIT38_08960	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
LIT38_08965	COG0772	Belongs to the SEDS family
LIT38_08975	COG0812	UDP-N-acetylmuramate dehydrogenase activity
LIT38_08980	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
LIT38_08985	COG3879	Bacterial protein of unknown function (DUF881)
LIT38_08990	COG3879	Bacterial protein of unknown function (DUF881)
LIT38_08995	COG3856	small basic protein
LIT38_09000	COG0849	cell division
LIT38_09005	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
LIT38_09020	COG1191	sigma factor activity
LIT38_09025	COG1191	sigma factor activity
LIT38_09030	COG1873	PFAM PRC-barrel domain
LIT38_09035	COG1496	oxidoreductase activity
LIT38_09040	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
LIT38_09045	COG1799	cell septum assembly
LIT38_09050	COG0762	integral membrane protein
LIT38_09055	COG2302	S4 RNA-binding domain
LIT38_09060	COG3599	regulation of cell shape
LIT38_09065	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
LIT38_09075	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
LIT38_09080	COG0564	pseudouridine synthase activity
LIT38_09085	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
LIT38_09095	COG0540	Belongs to the ATCase OTCase family
LIT38_09100	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
LIT38_09105	COG0505	Belongs to the CarA family
LIT38_09110	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
LIT38_09115	COG0543	2 iron, 2 sulfur cluster binding
LIT38_09120	COG0167	dihydroorotate dehydrogenase activity
LIT38_09125	COG0284	orotidine-5'-phosphate decarboxylase activity
LIT38_09145	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
LIT38_09150	COG1561	YicC-like family, N-terminal region
LIT38_09160	COG0194	GDP metabolic process
LIT38_09165	COG1758	RNA polymerase activity
LIT38_09170	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
LIT38_09175	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
LIT38_09185	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
LIT38_09190	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
LIT38_09190	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
LIT38_09195	COG0820	rRNA (adenine-C2-)-methyltransferase activity
LIT38_09200	COG0631	protein serine/threonine phosphatase activity
LIT38_09205	COG0515	serine threonine protein kinase
LIT38_09205	COG2815	serine threonine protein kinase
LIT38_09210	COG1162	GTPase activity
LIT38_09215	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
LIT38_09220	COG1564	THIamine pyrophosphokinase
LIT38_09230	COG0227	Belongs to the bacterial ribosomal protein bL28 family
LIT38_09235	COG1302	Protein conserved in bacteria
LIT38_09240	COG1461	Dihydroxyacetone kinase
LIT38_09245	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
LIT38_09250	COG1349	DNA-binding transcription factor activity
LIT38_09255	COG0416	fatty acid biosynthetic process
LIT38_09260	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
LIT38_09265	COG1028	Short-chain dehydrogenase reductase Sdr
LIT38_09270	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LIT38_09275	COG0571	ribonuclease III activity
LIT38_09280	COG1196	nuclear chromosome segregation
LIT38_09285	COG0552	protein localization to endoplasmic reticulum
LIT38_09295	COG1131	(ABC) transporter
LIT38_09310	COG0714	Associated with various cellular activities
LIT38_09330	COG2739	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
LIT38_09335	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
LIT38_09345	COG1837	Belongs to the UPF0109 family
LIT38_09355	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
LIT38_09360	COG0336	Belongs to the RNA methyltransferase TrmD family
LIT38_09400	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
LIT38_09405	COG0758	DNA mediated transformation
LIT38_09410	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
LIT38_09415	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
LIT38_09420	COG4974	Belongs to the 'phage' integrase family
LIT38_09425	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
LIT38_09430	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
LIT38_09435	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
LIT38_09440	COG1815	bacterial-type flagellum-dependent cell motility
LIT38_09445	COG1558	bacterial-type flagellum-dependent cell motility
LIT38_09450	COG1677	Flagellar hook-basal body complex protein FliE
LIT38_09455	COG1766	The M ring may be actively involved in energy transduction
LIT38_09460	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
LIT38_09465	COG1317	bacterial-type flagellum organization
LIT38_09470	COG1157	protein secretion by the type III secretion system
LIT38_09475	COG2882	bacterial-type flagellum organization
LIT38_09490	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
LIT38_09500	COG4786	Flagellar basal body rod
LIT38_09505	COG1582	Flagellar protein (FlbD)
LIT38_09510	COG1580	Controls the rotational direction of flagella during chemotaxis
LIT38_09515	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
LIT38_09520	COG1776	CheC inhibitor of MCP methylation
LIT38_09520	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
LIT38_09525	COG2201	protein-glutamate methylesterase activity
LIT38_09530	COG3190	flagellar
LIT38_09535	COG1338	Plays a role in the flagellum-specific transport system
LIT38_09540	COG1987	bacterial-type flagellum assembly
LIT38_09545	COG1684	flagellar biosynthetic protein fliR
LIT38_09550	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
LIT38_09555	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
LIT38_09560	COG1419	protein localization to endoplasmic reticulum
LIT38_09565	COG0455	bacterial-type flagellum organization
LIT38_09570	COG2201	protein-glutamate methylesterase activity
LIT38_09575	COG2198	Histidine kinase
LIT38_09575	COG0643	Histidine kinase
LIT38_09580	COG0835	chemotaxis
LIT38_09585	COG1776	CheC inhibitor of MCP methylation
LIT38_09590	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
LIT38_09595	COG1191	sigma factor activity
LIT38_09625	COG0528	UMP kinase activity
LIT38_09630	COG0233	cytoplasmic translational termination
LIT38_09640	COG4589	Belongs to the CDS family
LIT38_09645	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
LIT38_09650	COG0750	zinc metalloprotease
LIT38_09655	COG0442	prolyl-tRNA aminoacylation
LIT38_09660	COG2176	DNA-directed DNA polymerase activity
LIT38_09665	COG0779	Required for maturation of 30S ribosomal subunits
LIT38_09670	COG0195	Participates in both transcription termination and antitermination
LIT38_09675	COG2740	Nucleic-acid-binding protein implicated in transcription termination
LIT38_09680	COG1358	cellular component organization or biogenesis
LIT38_09690	COG1550	Protein conserved in bacteria
LIT38_09700	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
LIT38_09705	COG0196	riboflavin kinase activity
LIT38_09710	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
LIT38_09715	COG1185	polyribonucleotide nucleotidyltransferase activity
LIT38_09720	COG0726	polysaccharide deacetylase
LIT38_09725	COG0612	Peptidase, M16
LIT38_09730	COG1873	PFAM PRC-barrel domain
LIT38_09740	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
LIT38_09745	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
LIT38_09750	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
LIT38_09755	COG0527	aspartate kinase activity
LIT38_09765	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
LIT38_09770	COG0740	serine-type endopeptidase activity
LIT38_09780	COG1674	ftsk spoiiie
LIT38_09780	COG4980	gas vesicle protein
LIT38_09785	COG2188	Transcriptional regulator
LIT38_09790	COG1744	ABC transporter substrate-binding protein PnrA-like
LIT38_09795	COG3845	ABC transporter
LIT38_09800	COG4603	Belongs to the binding-protein-dependent transport system permease family
LIT38_09805	COG1079	Belongs to the binding-protein-dependent transport system permease family
LIT38_09810	COG0612	Peptidase, M16
LIT38_09815	COG0612	Peptidase, M16
LIT38_09820	COG0300	oxidoreductase activity
LIT38_09835	COG1426	Protein conserved in bacteria
LIT38_09840	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
LIT38_09845	COG1058	Belongs to the CinA family
LIT38_09845	COG1546	Belongs to the CinA family
LIT38_09850	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
LIT38_09855	COG1418	mRNA catabolic process
LIT38_09860	COG1692	metallophosphoesterase
LIT38_09865	COG2359	stage V sporulation protein S
LIT38_09875	COG0674	pyruvate-flavodoxin oxidoreductase activity
LIT38_09875	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
LIT38_09880	COG1013	pyruvate-flavodoxin oxidoreductase activity
LIT38_09885	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
LIT38_09890	COG4550	Control of competence regulator ComK, YlbF/YmcA
LIT38_09920	COG0346	lactoylglutathione lyase activity
LIT38_09930	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
LIT38_09935	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
LIT38_09940	COG0747	negative chemotaxis
LIT38_09950	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LIT38_09960	COG4608	Belongs to the ABC transporter superfamily
LIT38_09965	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LIT38_09970	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LIT38_09980	COG1077	Cell shape determining protein MreB Mrl
LIT38_09985	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
LIT38_09990	COG1923	regulation of RNA biosynthetic process
LIT38_09995	COG0464	growth
LIT38_10005	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
LIT38_10020	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
LIT38_10025	COG2186	Transcriptional regulator
LIT38_10035	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
LIT38_10040	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
LIT38_10045	COG3090	Trap-type c4-dicarboxylate transport system, small permease component
LIT38_10045	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
LIT38_10050	COG2860	membrane
LIT38_10055	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
LIT38_10060	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
LIT38_10065	COG0789	Transcriptional regulator
LIT38_10070	COG0174	glutamine synthetase
LIT38_10085	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
LIT38_10095	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
LIT38_10100	COG4224	UPF0291 protein
LIT38_10115	COG3763	UPF0154 protein
LIT38_10125	COG1132	(ABC) transporter
LIT38_10130	COG1132	(ABC) transporter
LIT38_10135	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
LIT38_10140	COG1522	sequence-specific DNA binding
LIT38_10150	COG0785	Cytochrome C biogenesis protein
LIT38_10155	COG2201	protein-glutamate methylesterase activity
LIT38_10160	COG4846	Membrane protein involved in cytochrome C biogenesis
LIT38_10185	COG0668	transmembrane transport
LIT38_10195	COG1653	transport
LIT38_10200	COG1175	transmembrane transport
LIT38_10210	COG1234	tRNA 3'-trailer cleavage
LIT38_10215	COG0647	UMP catabolic process
LIT38_10230	COG1285	pathogenesis
LIT38_10235	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
LIT38_10245	COG1028	Short-chain dehydrogenase reductase Sdr
LIT38_10255	COG2186	Transcriptional regulator
LIT38_10260	COG0277	FAD linked oxidase domain protein
LIT38_10265	COG0385	Bile acid
LIT38_10270	COG2271	Major facilitator Superfamily
LIT38_10280	COG3201	nicotinamide mononucleotide transporter
LIT38_10310	COG2207	Transcriptional regulator
LIT38_10310	COG4753	response regulator
LIT38_10325	COG1757	Na H antiporter
LIT38_10330	COG0165	Argininosuccinate lyase
LIT38_10340	COG3773	Cell wall hydrolase
LIT38_10355	COG3773	Cell wall hydrolase
LIT38_10415	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LIT38_10425	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LIT38_10460	COG0747	negative chemotaxis
LIT38_10470	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LIT38_10480	COG4608	Belongs to the ABC transporter superfamily
LIT38_10485	COG0534	Mate efflux family protein
LIT38_10520	COG3314	Sporulation integral membrane protein YlbJ
LIT38_10535	COG1136	(ABC) transporter
LIT38_10540	COG0577	efflux transmembrane transporter activity
LIT38_10545	COG3850	Histidine kinase
LIT38_10545	COG5002	protein histidine kinase activity
LIT38_10560	COG0028	Belongs to the TPP enzyme family
LIT38_10565	COG0440	acetolactate synthase activity
LIT38_10600	COG1175	transmembrane transport
LIT38_10605	COG0395	ABC-type sugar transport system, permease component
LIT38_10610	COG2188	Transcriptional regulator
LIT38_10620	COG2222	sugar isomerase
LIT38_10625	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LIT38_10630	COG3715	PTS system
LIT38_10635	COG3716	PTS system mannose fructose sorbose family IID component
LIT38_10645	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
LIT38_10675	COG1959	2 iron, 2 sulfur cluster binding
LIT38_10685	COG3633	Involved in the import of serine and threonine into the cell, with the concomitant import of sodium (symport system)
LIT38_10695	COG1028	Short-chain dehydrogenase reductase Sdr
LIT38_10700	COG0753	catalase activity
LIT38_10705	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
LIT38_10710	COG0583	DNA-binding transcription factor activity
LIT38_10715	COG0281	malic enzyme
LIT38_10725	COG1125	glycine betaine transport
LIT38_10725	COG0517	IMP dehydrogenase activity
LIT38_10730	COG1174	glycine betaine transport
LIT38_10740	COG3681	Belongs to the UPF0597 family
LIT38_10745	COG2197	response regulator
LIT38_10750	COG2072	flavoprotein involved in K transport
LIT38_10755	COG0657	acetylesterase activity
LIT38_10765	COG1404	Belongs to the peptidase S8 family
LIT38_10775	COG0697	spore germination
LIT38_10805	COG3069	C4-dicarboxylate transmembrane transporter activity
LIT38_10850	COG2059	Chromate
LIT38_10855	COG2059	Chromate
LIT38_10875	COG2972	Histidine kinase
LIT38_10880	COG4753	response regulator
LIT38_10880	COG2207	Transcriptional regulator
LIT38_10890	COG1175	transmembrane transport
LIT38_10895	COG0395	ABC-type sugar transport system, permease component
LIT38_10900	COG5578	integral membrane protein
LIT38_10905	COG3507	Belongs to the glycosyl hydrolase 43 family
LIT38_10915	COG3622	Belongs to the hyi family
LIT38_10920	COG2084	Dehydrogenase
LIT38_10925	COG0741	lytic transglycosylase activity
LIT38_10930	COG1368	sulfuric ester hydrolase activity
LIT38_10935	COG2223	nitrite transmembrane transporter activity
LIT38_10940	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LIT38_10945	COG0243	molybdopterin cofactor binding
LIT38_10950	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LIT38_10955	COG2146	nitrite reductase [NAD(P)H] activity
LIT38_10960	COG1587	Uroporphyrinogen-III synthase
LIT38_10965	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
LIT38_10965	COG1587	Uroporphyrinogen-III synthase
LIT38_10975	COG1653	transport
LIT38_10980	COG1175	transmembrane transport
LIT38_10985	COG0395	ABC-type sugar transport system, permease component
LIT38_10990	COG0366	Alpha amylase catalytic
LIT38_10995	COG0366	Alpha amylase catalytic
LIT38_11005	COG4362	Belongs to the NOS family. Bacterial NOS oxygenase subfamily
LIT38_11015	COG0069	glutamate synthase activity
LIT38_11030	COG2814	Major facilitator Superfamily
LIT38_11050	COG1024	Enoyl-CoA hydratase
LIT38_11055	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LIT38_11070	COG2720	vancomycin resistance protein
LIT38_11075	COG0840	transmembrane signaling receptor activity
LIT38_11085	COG0701	Predicted permease
LIT38_11090	COG0523	cobalamin synthesis protein
LIT38_11095	COG0267	Belongs to the bacterial ribosomal protein bL33 family
LIT38_11105	COG1028	Short-chain dehydrogenase reductase Sdr
LIT38_11125	COG2323	membrane
LIT38_11140	COG0419	ATPase involved in DNA repair
LIT38_11145	COG0137	argininosuccinate synthase activity
LIT38_11155	COG5522	Integral membrane protein (intg_mem_TP0381)
LIT38_11160	COG5146	pantothenate kinase activity
LIT38_11170	COG0791	NLP P60 protein
LIT38_11170	COG1388	LysM domain
LIT38_11180	COG1876	peptidase activity
LIT38_11185	COG1363	Peptidase, m42
LIT38_11190	COG0628	permease
LIT38_11195	COG3096	Plays a central role in chromosome condensation, segregation and cell cycle progression. Functions as a homodimer, which is essential for chromosome partition. Involved in negative DNA supercoiling in vivo, and by this means organize and compact chromosomes. May achieve or facilitate chromosome segregation by condensation DNA from both sides of a centrally located replisome during cell division
LIT38_11195	COG3264	Mechanosensitive ion channel
LIT38_11210	COG1199	ATP-dependent helicase activity
LIT38_11210	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
LIT38_11215	COG2364	Membrane
LIT38_11220	COG1368	sulfuric ester hydrolase activity
LIT38_11230	COG1388	LysM domain
LIT38_11240	COG0745	RESPONSE REGULATOR receiver
LIT38_11245	COG5002	protein histidine kinase activity
LIT38_11260	COG1760	l-serine dehydratase
LIT38_11265	COG1760	l-serine dehydratase
LIT38_11270	COG1525	nuclease
LIT38_11285	COG0217	transcriptional regulatory protein
LIT38_11295	COG3764	Sortase (surface protein transpeptidase)
LIT38_11310	COG1541	Catalyzes the activation of phenylacetic acid (PA) to phenylacetyl-CoA (PA-CoA)
LIT38_11315	COG3396	Phenylacetate-CoA oxygenase
LIT38_11340	COG1024	Enoyl-CoA hydratase
LIT38_11345	COG1024	Enoyl-CoA hydratase
LIT38_11350	COG1250	3-hydroxyacyl-CoA dehydrogenase
LIT38_11355	COG0183	Belongs to the thiolase family
LIT38_11360	COG3327	negative regulation of DNA-templated transcription, initiation
LIT38_11390	COG4120	Belongs to the binding-protein-dependent transport system permease family
LIT38_11395	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
LIT38_11415	COG0022	dehydrogenase e1 component
LIT38_11430	COG3185	4-Hydroxyphenylpyruvate dioxygenase
LIT38_11435	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
LIT38_11440	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
LIT38_11445	COG0179	Fumarylacetoacetate (FAA) hydrolase
LIT38_11455	COG1307	EDD domain protein, DegV family
LIT38_11460	COG0488	(ABC) transporter
LIT38_11470	COG0753	catalase activity
LIT38_11485	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LIT38_11525	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
LIT38_11535	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LIT38_11555	COG0464	growth
LIT38_11560	COG0824	Thioesterase
LIT38_11570	COG4841	protein insertion into membrane
LIT38_11580	COG2843	Capsule synthesis protein
LIT38_11585	COG5002	protein histidine kinase activity
LIT38_11590	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
LIT38_11605	COG3858	chitin binding
LIT38_11615	COG2252	PERMEase
LIT38_11625	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
LIT38_11625	COG3608	succinylglutamate desuccinylase aspartoacylase
LIT38_11630	COG1529	Aldehyde oxidase and xanthine dehydrogenase
LIT38_11665	COG1335	isochorismatase
LIT38_11670	COG0163	prenyltransferase activity
LIT38_11705	COG4576	ethanolamine utilization protein EutN carboxysome structural protein Ccml
LIT38_11710	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
LIT38_11715	COG1878	Catalyzes the hydrolysis of N-formyl-L-kynurenine to L- kynurenine, the second step in the kynurenine pathway of tryptophan degradation
LIT38_11720	COG3665	Urea carboxylase-associated protein
LIT38_11725	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LIT38_11730	COG0402	S-adenosylhomocysteine deaminase activity
LIT38_11740	COG1832	CoA-binding protein
LIT38_11745	COG0187	DNA topoisomerase II activity
LIT38_11750	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
LIT38_11755	COG1115	amino acid carrier protein
LIT38_11775	COG2226	methyltransferase
LIT38_11780	COG0745	RESPONSE REGULATOR receiver
LIT38_11800	COG0534	Mate efflux family protein
LIT38_11830	COG0398	Pfam SNARE associated Golgi protein
LIT38_11840	COG1408	metallophosphoesterase
LIT38_11845	COG0726	polysaccharide deacetylase
LIT38_11865	COG2323	membrane
LIT38_11870	COG1113	amino acid transport
LIT38_11885	COG0326	Molecular chaperone. Has ATPase activity
LIT38_11900	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
LIT38_11910	COG3221	ABC-type phosphate phosphonate transport system periplasmic component
LIT38_11925	COG1164	Oligoendopeptidase f
LIT38_11945	COG3621	Patatin-like phospholipase
LIT38_11955	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
LIT38_11965	COG2197	response regulator
LIT38_11970	COG4585	Histidine kinase
LIT38_11975	COG3239	Fatty acid desaturase
LIT38_11985	COG5577	PFAM Coat F domain
LIT38_12030	COG0298	carbon dioxide binding
LIT38_12045	COG0375	protein maturation
LIT38_12065	COG1063	alcohol dehydrogenase
LIT38_12070	COG0514	ATP-dependent DNA helicase (RecQ)
LIT38_12075	COG2353	YceI-like domain
LIT38_12080	COG2027	D-alanyl-D-alanine carboxypeptidase
LIT38_12090	COG3695	enzyme binding
LIT38_12100	COG1404	Belongs to the peptidase S8 family
LIT38_12105	COG3663	DNA glycosylase
LIT38_12110	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
LIT38_12120	COG1418	mRNA catabolic process
LIT38_12130	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LIT38_12135	COG0346	lactoylglutathione lyase activity
LIT38_12160	COG2310	stress, protein
LIT38_12165	COG2310	stress, protein
LIT38_12175	COG4989	oxidoreductase activity
LIT38_12190	COG1388	LysM domain
LIT38_12190	COG3584	3D domain protein
LIT38_12195	COG5002	protein histidine kinase activity
LIT38_12230	COG3361	conserved protein (COG2071)
LIT38_12255	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
LIT38_12260	COG1012	belongs to the aldehyde dehydrogenase family
LIT38_12265	COG1999	signal sequence binding
LIT38_12280	COG2030	dehydratase
LIT38_12285	COG0488	(ABC) transporter
LIT38_12300	COG1686	Belongs to the peptidase S11 family
LIT38_12310	COG2404	hydrolase activity, acting on ester bonds
LIT38_12315	COG3314	Sporulation integral membrane protein YlbJ
LIT38_12320	COG0010	Belongs to the arginase family
LIT38_12325	COG1228	amidohydrolase
LIT38_12330	COG2987	Catalyzes the conversion of urocanate to 4-imidazolone- 5-propionate
LIT38_12345	COG2340	Cysteine-rich secretory protein family
LIT38_12355	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
LIT38_12370	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
LIT38_12380	COG0392	lysyltransferase activity
LIT38_12380	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
LIT38_12405	COG2105	PFAM AIG2 family protein
LIT38_12405	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
LIT38_12415	COG0318	PFAM AMP-dependent synthetase and ligase
LIT38_12430	COG0508	dehydrogenase complex catalyzes the overall conversion of
LIT38_12435	COG0567	Dehydrogenase, E1 component
LIT38_12450	COG0626	cystathionine gamma-synthase activity
LIT38_12455	COG0626	cystathionine gamma-synthase activity
LIT38_12460	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
LIT38_12460	COG0646	methionine synthase
LIT38_12465	COG1410	methionine synthase
LIT38_12465	COG0646	methionine synthase
LIT38_12470	COG0546	phosphoglycolate phosphatase activity
LIT38_12505	COG0656	L-ascorbic acid biosynthetic process
LIT38_12510	COG3478	Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082)
LIT38_12515	COG2346	COG2346, Truncated hemoglobins
LIT38_12545	COG2340	Cysteine-rich secretory protein family
LIT38_12555	COG2008	Catalyzes the cleavage of L-allo-threonine and L- threonine to glycine and acetaldehyde
LIT38_12565	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
LIT38_12570	COG1845	cytochrome c oxidase, subunit III
LIT38_12575	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
LIT38_12595	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
LIT38_12605	COG1309	transcriptional regulator
LIT38_12615	COG2861	carbohydrate metabolic process
LIT38_12630	COG1176	ABC-type spermidine putrescine transport system, permease component I
LIT38_12645	COG0720	synthase
LIT38_12660	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
LIT38_12665	COG1984	allophanate hydrolase subunit 2
LIT38_12670	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
LIT38_12675	COG1914	H( )-stimulated, divalent metal cation uptake system
LIT38_12680	COG4336	lyase activity
LIT38_12685	COG0737	Belongs to the 5'-nucleotidase family
LIT38_12690	COG1028	Short-chain dehydrogenase reductase Sdr
LIT38_12700	COG0628	permease
LIT38_12720	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
LIT38_12725	COG2076	Multidrug Resistance protein
LIT38_12730	COG2076	Multidrug Resistance protein
LIT38_12740	COG0708	Exodeoxyribonuclease III
LIT38_12755	COG0351	phosphomethylpyrimidine kinase
LIT38_12760	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
LIT38_12770	COG1764	response to oxidative stress
LIT38_12775	COG0561	phosphatase activity
LIT38_12780	COG1595	DNA-templated transcription, initiation
LIT38_12800	COG4990	cell redox homeostasis
LIT38_12810	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
LIT38_12820	COG3773	Cell wall hydrolase
LIT38_12830	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
LIT38_12840	COG4536	flavin adenine dinucleotide binding
LIT38_12850	COG1131	(ABC) transporter
LIT38_12875	COG1968	undecaprenyl-diphosphatase activity
LIT38_12885	COG1272	protein, Hemolysin III
LIT38_12925	COG4641	Protein conserved in bacteria
LIT38_12935	COG1210	Utp--glucose-1-phosphate uridylyltransferase
LIT38_12990	COG3273	potassium ion transport
LIT38_12990	COG0471	metal ion transport
LIT38_12995	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
LIT38_13000	COG1091	dTDP-4-dehydrorhamnose reductase activity
LIT38_13005	COG1088	dTDP-glucose 4,6-dehydratase activity
LIT38_13010	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
LIT38_13020	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
LIT38_13025	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LIT38_13030	COG0529	Catalyzes the synthesis of activated sulfate
LIT38_13040	COG1778	Involved in the biosynthesis of lipopolysaccharides (LPSs). Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8-phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate
LIT38_13050	COG2877	3-deoxy-8-phosphooctulonate synthase activity
LIT38_13055	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
LIT38_13075	COG0613	PHP domain protein
LIT38_13090	COG1012	belongs to the aldehyde dehydrogenase family
LIT38_13095	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
LIT38_13105	COG4145	pantothenate transmembrane transporter activity
LIT38_13115	COG0066	3-isopropylmalate dehydratase activity
LIT38_13120	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
LIT38_13125	COG1804	L-carnitine dehydratase bile acid-inducible protein F
LIT38_13130	COG1802	Transcriptional regulator
LIT38_13135	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
LIT38_13145	COG0840	transmembrane signaling receptor activity
LIT38_13150	COG2814	Major facilitator Superfamily
LIT38_13165	COG1929	Belongs to the glycerate kinase type-1 family
LIT38_13175	COG3835	regulator
LIT38_13195	COG0529	Catalyzes the synthesis of activated sulfate
LIT38_13200	COG2046	Belongs to the sulfate adenylyltransferase family
LIT38_13205	COG0306	phosphate transporter
LIT38_13210	COG0175	sulfate reduction
LIT38_13225	COG0673	inositol 2-dehydrogenase activity
LIT38_13230	COG1641	Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes
LIT38_13235	COG1691	(AIR) carboxylase
LIT38_13245	COG1641	Involved in the biosynthesis of a nickel-pincer cofactor ((SCS)Ni(II) pincer complex). Binds Ni(2 ), and functions in nickel delivery to pyridinium-3,5-bisthiocarboxylic acid mononucleotide (P2TMN), to form the mature cofactor. Is thus probably required for the activation of nickel-pincer cofactor- dependent enzymes
LIT38_13250	COG3875	lactate racemase activity
LIT38_13255	COG1119	ATPase activity
LIT38_13280	COG1024	Enoyl-CoA hydratase
LIT38_13290	COG1802	Transcriptional regulator
LIT38_13300	COG0247	lactate metabolic process
LIT38_13305	COG0277	FAD linked oxidase domain protein
LIT38_13310	COG3829	transcription factor binding
LIT38_13310	COG3290	protein histidine kinase activity
LIT38_13320	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
LIT38_13330	COG0039	L-malate dehydrogenase activity
LIT38_13340	COG4576	ethanolamine utilization protein EutN carboxysome structural protein Ccml
LIT38_13360	COG1012	belongs to the aldehyde dehydrogenase family
LIT38_13360	COG1454	alcohol dehydrogenase
LIT38_13365	COG4816	utilization protein
LIT38_13370	COG4302	ethanolamine ammonia-lyase activity
LIT38_13375	COG4303	Ethanolamine ammonia lyase large subunit
LIT38_13380	COG4819	ethanolamine utilization protein
LIT38_13385	COG4917	ethanolamine utilization protein
LIT38_13390	COG4810	utilization protein
LIT38_13395	COG3192	ethanolamine utilization protein
LIT38_13410	COG4302	ethanolamine ammonia-lyase activity
LIT38_13415	COG4303	Ethanolamine ammonia lyase large subunit
LIT38_13425	COG2814	Major facilitator Superfamily
LIT38_13435	COG2226	methyltransferase
LIT38_13445	COG1960	acyl-CoA dehydrogenase activity
LIT38_13465	COG1250	3-hydroxyacyl-CoA dehydrogenase
LIT38_13470	COG1309	transcriptional regulator
LIT38_13475	COG0318	PFAM AMP-dependent synthetase and ligase
LIT38_13480	COG1028	Short-chain dehydrogenase reductase Sdr
LIT38_13500	COG0346	lactoylglutathione lyase activity
LIT38_13520	COG3383	formate dehydrogenase (NAD+) activity
LIT38_13525	COG2427	Protein of unknown function (DUF1641)
LIT38_13535	COG2223	nitrite transmembrane transporter activity
LIT38_13540	COG1309	transcriptional regulator
LIT38_13550	COG2357	RelA SpoT domain protein
LIT38_13555	COG1846	Transcriptional regulator
LIT38_13560	COG2814	Major facilitator Superfamily
LIT38_13585	COG0681	Belongs to the peptidase S26 family
LIT38_13595	COG3227	Zinc metalloprotease (Elastase)
LIT38_13610	COG0745	RESPONSE REGULATOR receiver
LIT38_13615	COG0642	Histidine kinase
LIT38_13620	COG1136	(ABC) transporter
LIT38_13625	COG0577	efflux transmembrane transporter activity
LIT38_13635	COG4821	SIS domain
LIT38_13640	COG0363	glucosamine-6-phosphate deaminase activity
LIT38_13645	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LIT38_13645	COG1263	PTS System
LIT38_13650	COG3394	polysaccharide catabolic process
LIT38_13660	COG1486	melibiose metabolic process
LIT38_13665	COG1447	Phosphotransferase system cellobiose-specific component IIA
LIT38_13670	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
LIT38_13675	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
LIT38_13680	COG2188	Transcriptional regulator
LIT38_13685	COG0456	acetyltransferase
LIT38_13685	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
LIT38_13690	COG0500	methyltransferase
LIT38_13720	COG3383	formate dehydrogenase (NAD+) activity
LIT38_13730	COG0584	glycerophosphoryl diester phosphodiesterase
LIT38_13755	COG5002	protein histidine kinase activity
LIT38_13760	COG1995	Catalyzes the NAD(P)-dependent oxidation of 4- (phosphohydroxy)-L-threonine (HTP) into 2-amino-3-oxo-4- (phosphohydroxy)butyric acid which spontaneously decarboxylates to form 3-amino-2-oxopropyl phosphate (AHAP)
LIT38_13790	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
LIT38_13795	COG1098	S1 RNA binding domain
LIT38_13800	COG0385	Bile acid
LIT38_13805	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
LIT38_13840	COG4638	Rieske (2fe-2S)
LIT38_13855	COG0028	Belongs to the TPP enzyme family
LIT38_13860	COG1028	Short-chain dehydrogenase reductase Sdr
LIT38_13880	COG1414	Transcriptional regulator
LIT38_13885	COG2267	carboxylic ester hydrolase activity
LIT38_13890	COG1268	BioY protein
LIT38_13895	COG0318	PFAM AMP-dependent synthetase and ligase
LIT38_13900	COG0183	Belongs to the thiolase family
LIT38_13935	COG5632	N-Acetylmuramoyl-L-alanine amidase
LIT38_13935	COG3409	Peptidoglycan-binding domain 1 protein
LIT38_13945	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
LIT38_13950	COG0697	spore germination
LIT38_13955	COG1917	Cupin 2, conserved barrel domain protein
LIT38_13955	COG2207	Transcriptional regulator
LIT38_13975	COG1368	sulfuric ester hydrolase activity
LIT38_13980	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
LIT38_13985	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
LIT38_13990	COG1121	(ABC) transporter
LIT38_13995	COG1108	ABC-type Mn2 Zn2 transport systems permease components
LIT38_14000	COG0803	Belongs to the bacterial solute-binding protein 9 family
LIT38_14010	COG0477	Major facilitator Superfamily
LIT38_14015	COG0477	Major facilitator Superfamily
LIT38_14015	COG2814	Major facilitator Superfamily
LIT38_14025	COG1070	Carbohydrate kinase
LIT38_14035	COG1940	carbohydrate kinase activity
LIT38_14045	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LIT38_14050	COG0733	neurotransmitter:sodium symporter activity
LIT38_14065	COG0833	amino acid
LIT38_14070	COG4638	Rieske (2fe-2S)
LIT38_14075	COG1126	abc transporter atp-binding protein
LIT38_14080	COG0765	amino acid transport
LIT38_14090	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LIT38_14095	COG1802	Transcriptional regulator
LIT38_14100	COG3835	regulator
LIT38_14110	COG3835	regulator
LIT38_14115	COG0473	3-isopropylmalate dehydrogenase activity
LIT38_14120	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
LIT38_14125	COG0183	Belongs to the thiolase family
LIT38_14130	COG1960	acyl-CoA dehydrogenase activity
LIT38_14135	COG1024	Enoyl-CoA hydratase
LIT38_14145	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
LIT38_14150	COG1250	3-hydroxyacyl-CoA dehydrogenase
LIT38_14160	COG0436	Aminotransferase
LIT38_14165	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
LIT38_14175	COG0716	FMN binding
LIT38_14185	COG0716	FMN binding
LIT38_14230	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LIT38_14235	COG4608	Belongs to the ABC transporter superfamily
LIT38_14240	COG0444	Belongs to the ABC transporter superfamily
LIT38_14245	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LIT38_14250	COG0601	transmembrane transport
LIT38_14260	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LIT38_14290	COG1177	transmembrane transport
LIT38_14295	COG1176	ABC-type spermidine putrescine transport system, permease component I
LIT38_14300	COG3842	ATPase activity
LIT38_14305	COG1840	ABC-type Fe3 transport system, periplasmic component
LIT38_14310	COG2188	Transcriptional regulator
LIT38_14325	COG0246	Mannitol dehydrogenase
LIT38_14330	COG3711	transcriptional antiterminator
LIT38_14335	COG2213	PTS system mannitol-specific
LIT38_14335	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
LIT38_14365	COG0662	Cupin 2, conserved barrel domain protein
LIT38_14385	COG1104	cysteine desulfurase activity
LIT38_14430	COG0454	-acetyltransferase
LIT38_14445	COG0500	methyltransferase
LIT38_14460	COG3540	Alkaline phosphatase
LIT38_14465	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
LIT38_14475	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
LIT38_14485	COG2602	Beta-lactamase
LIT38_14490	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LIT38_14500	COG3949	Membrane
LIT38_14505	COG4948	Mandelate Racemase Muconate Lactonizing
LIT38_14515	COG1473	amidohydrolase
LIT38_14540	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
LIT38_14545	COG1288	antiporter activity
LIT38_14555	COG0267	Belongs to the bacterial ribosomal protein bL33 family
LIT38_14570	COG0254	rRNA binding
LIT38_14575	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
LIT38_14580	COG3559	Exporter of polyketide antibiotics
LIT38_14585	COG1131	(ABC) transporter
LIT38_14610	COG3739	integral membrane protein
LIT38_14615	COG3655	Transcriptional regulator
LIT38_14630	COG0405	Gamma-glutamyltransferase
LIT38_14635	COG5002	protein histidine kinase activity
LIT38_14640	COG0745	RESPONSE REGULATOR receiver
LIT38_14650	COG1215	transferase activity, transferring glycosyl groups
LIT38_14710	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LIT38_14720	COG2109	Required for both de novo synthesis of the corrin ring for the assimilation of exogenous corrinoids. Participates in the adenosylation of a variety of incomplete and complete corrinoids
LIT38_14725	COG0778	Nitroreductase
LIT38_14765	COG1903	Catalyzes the methylation of C-1 in cobalt-precorrin-5B to form cobalt-precorrin-6A
LIT38_14790	COG0833	amino acid
LIT38_14795	COG4187	Peptidase family M20/M25/M40
LIT38_14805	COG2235	arginine
LIT38_14820	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LIT38_14835	COG0124	histidyl-tRNA synthetase
LIT38_14840	COG2318	DinB family
LIT38_14870	COG1522	sequence-specific DNA binding
LIT38_14875	COG2814	Major facilitator Superfamily
LIT38_14890	COG0561	phosphatase activity
LIT38_14895	COG1609	Transcriptional regulator
LIT38_14915	COG0697	spore germination
LIT38_14920	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LIT38_14955	COG1247	-acetyltransferase
LIT38_14965	COG1522	sequence-specific DNA binding
LIT38_14970	COG1335	isochorismatase
LIT38_14980	COG2318	DinB family
LIT38_14985	COG2226	methyltransferase
LIT38_15000	COG2318	DinB family
LIT38_15010	COG0488	(ABC) transporter
LIT38_15050	COG0400	carboxylic ester hydrolase activity
LIT38_15055	COG0346	lactoylglutathione lyase activity
LIT38_15060	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
LIT38_15065	COG0346	lactoylglutathione lyase activity
LIT38_15070	COG2259	Doxx family
LIT38_15075	COG4224	UPF0291 protein
LIT38_15080	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LIT38_15135	COG2318	DinB family
LIT38_15150	COG2217	Heavy metal translocating P-type atpase
LIT38_15165	COG1937	Protein conserved in bacteria
LIT38_15170	COG0659	secondary active sulfate transmembrane transporter activity
LIT38_15185	COG2824	Alkylphosphonate utilization operon protein PhnA
LIT38_15200	COG3559	Exporter of polyketide antibiotics
LIT38_15205	COG1131	(ABC) transporter
LIT38_15225	COG2205	protein histidine kinase activity
LIT38_15230	COG0517	IMP dehydrogenase activity
LIT38_15240	COG2146	nitrite reductase [NAD(P)H] activity
LIT38_15250	COG0702	epimerase
LIT38_15280	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
LIT38_15300	COG1621	beta-fructofuranosidase activity
LIT38_15310	COG1621	beta-fructofuranosidase activity
LIT38_15315	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LIT38_15320	COG1653	transport
LIT38_15325	COG0395	ABC-type sugar transport system, permease component
LIT38_15330	COG4209	transmembrane transport
LIT38_15335	COG1609	Transcriptional regulator
LIT38_15355	COG0640	Transcriptional regulator
LIT38_15360	COG0604	alcohol dehydrogenase
LIT38_15375	COG1280	lysine exporter protein (LysE YggA)
LIT38_15390	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
LIT38_15410	COG1396	sequence-specific DNA binding
LIT38_15415	COG0109	protoheme IX farnesyltransferase activity
LIT38_15435	COG3052	prosthetic group binding
LIT38_15440	COG1767	triphosphoribosyl-dephospho-CoA synthase activity
LIT38_15470	COG4903	ComK protein
LIT38_15490	COG1288	antiporter activity
LIT38_15495	COG1473	amidohydrolase
LIT38_15500	COG0583	DNA-binding transcription factor activity
LIT38_15530	COG0006	proline dipeptidase activity
LIT38_15540	COG1228	amidohydrolase
LIT38_15545	COG2508	Transcriptional regulator
LIT38_15560	COG1396	sequence-specific DNA binding
LIT38_15565	COG0183	Belongs to the thiolase family
LIT38_15570	COG1250	3-hydroxyacyl-CoA dehydrogenase
LIT38_15575	COG2610	gluconate transmembrane transporter activity
LIT38_15590	COG2031	fatty acid transporter
LIT38_15600	COG0788	formyltetrahydrofolate deformylase activity
LIT38_15605	COG3284	Transcriptional regulator
LIT38_15610	COG1063	alcohol dehydrogenase
LIT38_15615	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LIT38_15620	COG0508	dehydrogenase complex catalyzes the overall conversion of
LIT38_15625	COG0022	dehydrogenase e1 component
LIT38_15630	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
LIT38_15645	COG0778	Nitroreductase
LIT38_15650	COG2038	nicotinate-nucleotide-dimethylbenzimidazole phosphoribosyltransferase activity
LIT38_15655	COG0583	DNA-binding transcription factor activity
LIT38_15660	COG4106	trans-aconitate 2-methyltransferase activity
LIT38_15675	COG1131	(ABC) transporter
LIT38_15680	COG2197	response regulator
LIT38_15685	COG4585	Histidine kinase
LIT38_15690	COG1595	DNA-templated transcription, initiation
LIT38_15695	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
LIT38_15720	COG0210	DNA helicase
LIT38_15725	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
LIT38_15760	COG1074	ATP-dependent DNA helicase activity
LIT38_15780	COG0210	DNA helicase
LIT38_15795	COG1074	ATP-dependent DNA helicase activity
LIT38_15835	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
LIT38_15855	COG0247	lactate metabolic process
LIT38_15860	COG0277	FAD linked oxidase domain protein
LIT38_15865	COG1012	belongs to the aldehyde dehydrogenase family
LIT38_15870	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
LIT38_15875	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
LIT38_15880	COG1804	L-carnitine dehydratase bile acid-inducible protein F
LIT38_15890	COG1024	Enoyl-CoA hydratase
LIT38_15920	COG3829	transcription factor binding
LIT38_15930	COG2318	DinB family
LIT38_15935	COG1705	Flagellar rod assembly protein muramidase FlgJ
LIT38_15935	COG1388	LysM domain
LIT38_15960	COG1876	peptidase activity
LIT38_15970	COG2323	membrane
LIT38_16005	COG1764	response to oxidative stress
LIT38_16010	COG2128	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
LIT38_16020	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
LIT38_16025	COG0132	Catalyzes a mechanistically unusual reaction, the ATP- dependent insertion of CO2 between the N7 and N8 nitrogen atoms of 7,8-diaminopelargonic acid (DAPA) to form an ureido ring
LIT38_16030	COG1268	BioY protein
LIT38_16070	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LIT38_16075	COG2030	dehydratase
LIT38_16095	COG1301	dicarboxylic acid transport
LIT38_16130	COG1657	PFAM Prenyltransferase squalene oxidase
LIT38_16135	COG0561	phosphatase activity
LIT38_16145	COG1404	Belongs to the peptidase S8 family
LIT38_16155	COG0596	Alpha beta hydrolase
LIT38_16165	COG0662	Cupin 2, conserved barrel domain protein
LIT38_16205	COG1757	Na H antiporter
LIT38_16210	COG1231	oxidoreductase activity
LIT38_16215	COG1193	negative regulation of DNA recombination
LIT38_16235	COG0561	phosphatase activity
LIT38_16250	COG1940	carbohydrate kinase activity
LIT38_16260	COG0673	inositol 2-dehydrogenase activity
LIT38_16270	COG4608	Belongs to the ABC transporter superfamily
LIT38_16275	COG0444	Belongs to the ABC transporter superfamily
LIT38_16280	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LIT38_16285	COG0601	transmembrane transport
LIT38_16295	COG3639	organic phosphonate transmembrane transporter activity
LIT38_16300	COG3639	organic phosphonate transmembrane transporter activity
LIT38_16305	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
LIT38_16315	COG4778	phosphonate C-P lyase system protein PhnL
LIT38_16320	COG3454	Phosphonate metabolism
LIT38_16325	COG4107	phosphonate C-P lyase system protein PhnK
LIT38_16330	COG3627	carbon phosphorus lyase activity
LIT38_16360	COG0613	PHP domain protein
LIT38_16365	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
LIT38_16380	COG1349	DNA-binding transcription factor activity
LIT38_16390	COG1078	dGTPase activity
LIT38_16400	COG1366	Belongs to the anti-sigma-factor antagonist family
LIT38_16405	COG3403	YqcI/YcgG family
LIT38_16410	COG2323	membrane
LIT38_16415	COG2409	Drug exporters of the RND superfamily
LIT38_16425	COG3850	Histidine kinase
LIT38_16425	COG5002	protein histidine kinase activity
LIT38_16440	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
LIT38_16445	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
LIT38_16450	COG0640	Transcriptional regulator
LIT38_16470	COG0492	ferredoxin-NADP+ reductase activity
LIT38_16480	COG2076	Multidrug Resistance protein
LIT38_16485	COG2076	Multidrug Resistance protein
LIT38_16490	COG1309	transcriptional regulator
LIT38_16500	COG1028	Short-chain dehydrogenase reductase Sdr
LIT38_16510	COG2807	transmembrane transport
LIT38_16515	COG3192	ethanolamine utilization protein
LIT38_16520	COG0006	proline dipeptidase activity
LIT38_16535	COG3250	beta-galactosidase activity
LIT38_16550	COG1653	transport
LIT38_16555	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
LIT38_16560	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
LIT38_16565	COG1028	Short-chain dehydrogenase reductase Sdr
LIT38_16570	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
LIT38_16575	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
LIT38_16580	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
LIT38_16600	COG0395	ABC-type sugar transport system, permease component
LIT38_16605	COG1175	transmembrane transport
LIT38_16610	COG1653	transport
LIT38_16615	COG2207	Transcriptional regulator
LIT38_16615	COG4753	response regulator
LIT38_16630	COG1595	DNA-templated transcription, initiation
LIT38_16650	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LIT38_16655	COG0697	spore germination
LIT38_16660	COG2855	membrane
LIT38_16665	COG0583	DNA-binding transcription factor activity
LIT38_16675	COG1228	amidohydrolase
LIT38_16680	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LIT38_16690	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
LIT38_16700	COG2188	Transcriptional regulator
LIT38_16705	COG0590	tRNA wobble adenosine to inosine editing
LIT38_16725	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
LIT38_16760	COG2723	6-phospho-beta-galactosidase activity
LIT38_16770	COG2814	Major facilitator Superfamily
LIT38_16780	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LIT38_16785	COG2304	oxidoreductase activity
LIT38_16790	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LIT38_16810	COG1609	Transcriptional regulator
LIT38_16830	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LIT38_16845	COG2814	Major facilitator Superfamily
LIT38_16870	COG2514	catechol 2,3-dioxygenase activity
LIT38_16875	COG2259	Doxx family
LIT38_16880	COG1733	regulation of RNA biosynthetic process
LIT38_16885	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
LIT38_16890	COG1114	Component of the transport system for branched-chain amino acids
LIT38_16895	COG1802	Transcriptional regulator
LIT38_16910	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
LIT38_16920	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
LIT38_16930	COG0697	spore germination
LIT38_16935	COG1664	Polymer-forming cytoskeletal
LIT38_16940	COG0789	Transcriptional regulator
LIT38_16980	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
LIT38_16985	COG0569	domain protein
LIT38_16990	COG2356	endonuclease I
LIT38_17000	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
LIT38_17020	COG1301	dicarboxylic acid transport
LIT38_17025	COG0789	Transcriptional regulator
LIT38_17030	COG1253	flavin adenine dinucleotide binding
LIT38_17035	COG0586	Pfam SNARE associated Golgi protein
LIT38_17050	COG3716	PTS system mannose fructose sorbose family IID component
LIT38_17055	COG3715	PTS system
LIT38_17060	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LIT38_17060	COG2893	phosphoenolpyruvate-dependent sugar phosphotransferase system
LIT38_17085	COG5444	nuclease activity
LIT38_17130	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LIT38_17135	COG0444	Belongs to the ABC transporter superfamily
LIT38_17140	COG4608	Belongs to the ABC transporter superfamily
LIT38_17145	COG0006	proline dipeptidase activity
LIT38_17180	COG3152	Membrane
LIT38_17190	COG1595	DNA-templated transcription, initiation
LIT38_17195	COG5002	protein histidine kinase activity
LIT38_17195	COG5000	phosphorelay sensor kinase activity
LIT38_17205	COG0592	DNA-directed DNA polymerase activity
LIT38_17210	COG1051	belongs to the nudix hydrolase family
LIT38_17215	COG1357	PFAM Pentapeptide repeats (8 copies)
LIT38_17230	COG1131	(ABC) transporter
LIT38_17235	COG0842	Transport permease protein
LIT38_17265	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
LIT38_17280	COG1280	lysine exporter protein (LysE YggA)
LIT38_17285	COG1054	Belongs to the UPF0176 family
LIT38_17315	COG0456	acetyltransferase
LIT38_17350	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
LIT38_17355	COG0583	DNA-binding transcription factor activity
LIT38_17370	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
LIT38_17395	COG2197	response regulator
LIT38_17400	COG0243	molybdopterin cofactor binding
LIT38_17420	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
LIT38_17435	COG1741	Belongs to the pirin family
LIT38_17440	COG0655	NAD(P)H dehydrogenase (quinone) activity
LIT38_17445	COG0400	carboxylic ester hydrolase activity
LIT38_17455	COG1846	Transcriptional regulator
LIT38_17465	COG4149	molybdate abc transporter
LIT38_17480	COG0598	Magnesium transport protein CorA
LIT38_17485	COG1114	Component of the transport system for branched-chain amino acids
LIT38_17505	COG0778	Nitroreductase
LIT38_17510	COG0456	acetyltransferase
LIT38_17535	COG5002	protein histidine kinase activity
LIT38_17540	COG0745	RESPONSE REGULATOR receiver
LIT38_17550	COG0534	Mate efflux family protein
LIT38_17560	COG3832	glyoxalase III activity
LIT38_17570	COG2226	methyltransferase
LIT38_17585	COG0683	leucine binding
LIT38_17600	COG1022	Amp-dependent synthetase and ligase
LIT38_17620	COG0322	excinuclease ABC activity
LIT38_17625	COG1183	phosphatidylcholine synthase activity
LIT38_17630	COG1804	L-carnitine dehydratase bile acid-inducible protein F
LIT38_17640	COG0183	Belongs to the thiolase family
LIT38_17655	COG1595	DNA-templated transcription, initiation
LIT38_17665	COG1131	(ABC) transporter
LIT38_17670	COG1725	Transcriptional regulator
LIT38_17675	COG1620	l-lactate permease
LIT38_17680	COG1414	Transcriptional regulator
LIT38_17685	COG0179	Fumarylacetoacetate (FAA) hydrolase
LIT38_17690	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
LIT38_17695	COG0277	FAD linked oxidase domain protein
LIT38_17700	COG0247	lactate metabolic process
LIT38_17705	COG0277	FAD linked oxidase domain protein
LIT38_17710	COG2186	Transcriptional regulator
LIT38_17715	COG3883	PFAM NLP P60 protein
LIT38_17715	COG0791	NLP P60 protein
LIT38_17720	COG5609	conserved protein (DUF2294)
LIT38_17725	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
LIT38_17740	COG2427	Protein of unknown function (DUF1641)
LIT38_17745	COG3383	formate dehydrogenase (NAD+) activity
LIT38_17760	COG0456	acetyltransferase
LIT38_17765	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LIT38_17765	COG3153	acetyltransferase
LIT38_17785	COG1263	PTS System
LIT38_17785	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LIT38_17790	COG3876	Protein conserved in bacteria
LIT38_17795	COG1472	Belongs to the glycosyl hydrolase 3 family
LIT38_17800	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
LIT38_17805	COG1132	(ABC) transporter
LIT38_17810	COG3610	response to peptide
LIT38_17815	COG2966	Psort location CytoplasmicMembrane, score
LIT38_17820	COG0789	Transcriptional regulator
LIT38_17845	COG4585	Histidine kinase
LIT38_17855	COG2197	response regulator
LIT38_17865	COG2223	nitrite transmembrane transporter activity
LIT38_17895	COG0243	molybdopterin cofactor binding
LIT38_17935	COG0768	penicillin binding
LIT38_17940	COG2318	DinB family
LIT38_17950	COG2135	peptidase activity
LIT38_17965	COG2226	methyltransferase
LIT38_17975	COG1704	LemA family
LIT38_18010	COG0134	indole-3-glycerol-phosphate synthase activity
LIT38_18015	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
LIT38_18020	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
LIT38_18020	COG0512	Glutamine amidotransferase of anthranilate synthase
LIT38_18030	COG2258	MOSC domain
LIT38_18035	COG2814	Major facilitator Superfamily
LIT38_18040	COG0596	Alpha beta hydrolase
LIT38_18070	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LIT38_18070	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
LIT38_18070	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LIT38_18075	COG1105	Belongs to the carbohydrate kinase PfkB family
LIT38_18080	COG1349	DNA-binding transcription factor activity
LIT38_18090	COG2234	aminopeptidase activity
LIT38_18095	COG1268	BioY protein
LIT38_18100	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
LIT38_18105	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
LIT38_18110	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
LIT38_18115	COG2217	Heavy metal translocating P-type atpase
LIT38_18120	COG2608	mercury ion transmembrane transporter activity
LIT38_18125	COG1937	Protein conserved in bacteria
LIT38_18140	COG1280	lysine exporter protein (LysE YggA)
LIT38_18185	COG0456	acetyltransferase
LIT38_18200	COG0513	Belongs to the DEAD box helicase family
LIT38_18210	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
LIT38_18225	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
LIT38_18235	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
LIT38_18240	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
LIT38_18245	COG0671	phosphoesterase, PA-phosphatase related
LIT38_18250	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
LIT38_18255	COG1793	dna ligase
LIT38_18255	COG3285	dna ligase
LIT38_18260	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
LIT38_18270	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
LIT38_18280	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
LIT38_18285	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
LIT38_18285	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
LIT38_18290	COG0307	riboflavin synthase, alpha
LIT38_18295	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LIT38_18295	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LIT38_18300	COG2217	Heavy metal translocating P-type atpase
LIT38_18305	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LIT38_18320	COG4667	esterase of the alpha-beta hydrolase superfamily
LIT38_18325	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
LIT38_18330	COG1131	(ABC) transporter
LIT38_18355	COG0586	Pfam SNARE associated Golgi protein
LIT38_18360	COG0804	urea catabolic process
LIT38_18375	COG0534	Mate efflux family protein
LIT38_18385	COG1028	Short-chain dehydrogenase reductase Sdr
LIT38_18405	COG2340	Cysteine-rich secretory protein family
LIT38_18415	COG5002	protein histidine kinase activity
LIT38_18420	COG0745	RESPONSE REGULATOR receiver
LIT38_18445	COG0523	cobalamin synthesis protein
LIT38_18455	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
LIT38_18460	COG1316	TRANSCRIPTIONal
LIT38_18465	COG0793	Belongs to the peptidase S41A family
LIT38_18465	COG3409	Peptidoglycan-binding domain 1 protein
LIT38_18470	COG2608	mercury ion transmembrane transporter activity
LIT38_18480	COG1876	peptidase activity
LIT38_18500	COG0584	glycerophosphoryl diester phosphodiesterase
LIT38_18505	COG4326	sporulation control protein
LIT38_18525	COG4479	Belongs to the UPF0346 family
LIT38_18535	COG1509	lysine 2,3-aminomutase activity
LIT38_18540	COG3829	transcription factor binding
LIT38_18545	COG0456	acetyltransferase
LIT38_18550	COG1012	belongs to the aldehyde dehydrogenase family
LIT38_18555	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
LIT38_18560	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LIT38_18565	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
LIT38_18570	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
LIT38_18575	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
LIT38_18585	COG1619	proteins homologs of microcin C7 resistance protein MccF
LIT38_18610	COG2190	(PTS) system
LIT38_18615	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LIT38_18620	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LIT38_18635	COG2755	lipolytic protein G-D-S-L family
LIT38_18640	COG1999	signal sequence binding
LIT38_18650	COG5002	protein histidine kinase activity
LIT38_18655	COG1307	EDD domain protein, DegV family
LIT38_18665	COG0805	protein transport
LIT38_18670	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
LIT38_18675	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
LIT38_18685	COG0204	Acyl-transferase
LIT38_18690	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
LIT38_18705	COG2310	stress, protein
LIT38_18710	COG3853	Toxic anion resistance protein (TelA)
LIT38_18745	COG0861	Integral membrane protein TerC family
LIT38_18750	COG2310	stress, protein
LIT38_18760	COG0436	Aminotransferase
LIT38_18765	COG2521	methyltransferase
LIT38_18765	COG2136	Putative SAM-dependent methyltransferase
LIT38_18775	COG0129	dihydroxy-acid dehydratase activity
LIT38_18780	COG1413	lyase activity
LIT38_18785	COG0488	(ABC) transporter
LIT38_18790	COG1418	mRNA catabolic process
LIT38_18830	COG2226	methyltransferase
LIT38_18830	COG1073	alpha beta
LIT38_18840	COG1321	iron dependent repressor
LIT38_18845	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
LIT38_18850	COG1523	belongs to the glycosyl hydrolase 13 family
LIT38_18860	COG1278	Cold shock
LIT38_18870	COG0328	RNA-DNA hybrid ribonuclease activity
LIT38_18875	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
LIT38_18880	COG0328	RNA-DNA hybrid ribonuclease activity
LIT38_18895	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
LIT38_18905	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LIT38_18930	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
LIT38_18935	COG1755	Isoprenylcysteine carboxyl methyltransferase
LIT38_18940	COG3424	synthase
LIT38_18950	COG2233	PERMEase
LIT38_18955	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
LIT38_18965	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
LIT38_18970	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
LIT38_18980	COG0697	spore germination
LIT38_18985	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
LIT38_19015	COG2151	metal-sulfur cluster biosynthetic enzyme
LIT38_19020	COG1199	ATP-dependent helicase activity
LIT38_19030	COG0116	Belongs to the methyltransferase superfamily
LIT38_19040	COG3599	regulation of cell shape
LIT38_19045	COG4474	Belongs to the UPF0398 family
LIT38_19060	COG3359	exonuclease
LIT38_19065	COG1205	dead DEAH box helicase
LIT38_19065	COG1111	helicase
LIT38_19080	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LIT38_19090	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LIT38_19095	COG0601	transmembrane transport
LIT38_19125	COG3331	DNA recombination
LIT38_19130	COG4499	WXG100 protein secretion system (Wss), protein YukC
LIT38_19130	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LIT38_19140	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
LIT38_19145	COG3935	DnaD domain protein
LIT38_19175	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
LIT38_19175	COG1199	ATP-dependent helicase activity
LIT38_19180	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
LIT38_19185	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
LIT38_19190	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
LIT38_19205	COG0438	transferase activity, transferring glycosyl groups
LIT38_19210	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
LIT38_19215	COG1803	Methylglyoxal synthase
LIT38_19225	COG1694	Mazg nucleotide pyrophosphohydrolase
LIT38_19230	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
LIT38_19235	COG2738	Putative neutral zinc metallopeptidase
LIT38_19245	COG4347	Protein of unknown function (DUF1405)
LIT38_19255	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
LIT38_19275	COG0457	Tetratricopeptide repeat
LIT38_19285	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
LIT38_19290	COG0287	Prephenate dehydrogenase
LIT38_19295	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
LIT38_19300	COG4401	Chorismate mutase type I
LIT38_19305	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
LIT38_19310	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
LIT38_19315	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
LIT38_19320	COG0105	UTP biosynthetic process
LIT38_19325	COG0142	geranyltranstransferase activity
LIT38_19330	COG2226	methyltransferase
LIT38_19345	COG0302	gtp cyclohydrolase
LIT38_19350	COG0776	regulation of translation
LIT38_19355	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
LIT38_19370	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
LIT38_19375	COG1160	GTP binding
LIT38_19405	COG0539	negative regulation of cytoplasmic translation
LIT38_19410	COG0204	Acyl-transferase
LIT38_19415	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
LIT38_19430	COG2959	enzyme of heme biosynthesis
LIT38_19435	COG3773	Cell wall hydrolase
LIT38_19435	COG3409	Peptidoglycan-binding domain 1 protein
LIT38_19440	COG2339	peptidase activity
LIT38_19445	COG0252	asparaginase activity
LIT38_19450	COG0492	ferredoxin-NADP+ reductase activity
LIT38_19455	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
LIT38_19460	COG4862	establishment of competence for transformation
LIT38_19470	COG1408	metallophosphoesterase
LIT38_19495	COG3546	catalase activity
LIT38_19510	COG1266	CAAX protease self-immunity
LIT38_19515	COG0514	ATP-dependent DNA helicase (RecQ)
LIT38_19520	COG4955	Helix-turn-helix domain
LIT38_19530	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
LIT38_19535	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
LIT38_19540	COG0741	lytic transglycosylase activity
LIT38_19540	COG1196	nuclear chromosome segregation
LIT38_19540	COG0739	heme binding
LIT38_19550	COG1595	DNA-templated transcription, initiation
LIT38_19555	COG5002	protein histidine kinase activity
LIT38_19560	COG0745	RESPONSE REGULATOR receiver
LIT38_19565	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
LIT38_19570	COG1333	cytochrome c biogenesis protein
LIT38_19575	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LIT38_19580	COG1187	pseudouridine synthase activity
LIT38_19585	COG0700	Nucleoside recognition
LIT38_19590	COG2715	membrane protein required for spore maturation
LIT38_19595	COG1686	Belongs to the peptidase S11 family
LIT38_19600	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
LIT38_19615	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
LIT38_19630	COG1547	Domain of unknown function (DUF309)
LIT38_19640	COG4086	secreted protein
LIT38_19650	COG0697	spore germination
LIT38_19675	COG2172	sigma factor antagonist activity
LIT38_19685	COG1686	Belongs to the peptidase S11 family
LIT38_19700	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
LIT38_19705	COG4974	Belongs to the 'phage' integrase family
LIT38_19715	COG0735	belongs to the Fur family
LIT38_19720	COG1300	Membrane
LIT38_19730	COG1379	DNA repair
LIT38_19745	COG0667	Aldo Keto reductase
LIT38_19760	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
LIT38_19765	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
LIT38_19775	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
LIT38_19785	COG1073	alpha beta
LIT38_19795	COG4918	Iron-sulphur cluster biosynthesis
LIT38_19815	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
LIT38_19825	COG0300	oxidoreductase activity
LIT38_19830	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LIT38_19835	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
LIT38_19840	COG1215	transferase activity, transferring glycosyl groups
LIT38_19845	COG1902	pentaerythritol trinitrate reductase activity
LIT38_19850	COG0733	neurotransmitter:sodium symporter activity
LIT38_19860	COG1234	tRNA 3'-trailer cleavage
LIT38_19865	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
LIT38_19870	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
LIT38_19875	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
LIT38_19880	COG0784	Response regulator, receiver
LIT38_19880	COG0835	chemotaxis
LIT38_19885	COG2195	Cleaves the N-terminal amino acid of tripeptides
LIT38_19890	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
LIT38_19895	COG0346	lactoylglutathione lyase activity
LIT38_19905	COG1376	ErfK ybiS ycfS ynhG family protein
LIT38_19910	COG4129	membrane
LIT38_19915	COG1126	abc transporter atp-binding protein
LIT38_19920	COG0765	amino acid transport
LIT38_19925	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LIT38_19935	COG1703	isobutyryl-CoA mutase activity
LIT38_19940	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
LIT38_19940	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
LIT38_19950	COG0508	dehydrogenase complex catalyzes the overall conversion of
LIT38_19955	COG0022	dehydrogenase e1 component
LIT38_19960	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
LIT38_19965	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LIT38_19980	COG0280	phosphate acetyltransferase
LIT38_19985	COG3290	protein histidine kinase activity
LIT38_19985	COG3829	transcription factor binding
LIT38_19995	COG3093	addiction module antidote protein HigA
LIT38_20005	COG0750	zinc metalloprotease
LIT38_20010	COG0497	DNA recombination
LIT38_20015	COG1438	arginine binding
LIT38_20020	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
LIT38_20025	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
LIT38_20035	COG1722	exodeoxyribonuclease VII activity
LIT38_20040	COG1570	exodeoxyribonuclease VII activity
LIT38_20045	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
LIT38_20055	COG1302	Protein conserved in bacteria
LIT38_20060	COG0439	Biotin carboxylase
LIT38_20065	COG0511	ligase activity, forming carbon-carbon bonds
LIT38_20105	COG3854	ATPases associated with a variety of cellular activities
LIT38_20110	COG1785	Belongs to the alkaline phosphatase family
LIT38_20125	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
LIT38_20130	COG0006	proline dipeptidase activity
LIT38_20135	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
LIT38_20150	COG1752	Esterase of the alpha-beta hydrolase superfamily
LIT38_20160	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
LIT38_20165	COG0095	Lipoate-protein ligase
LIT38_20170	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LIT38_20175	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
LIT38_20180	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
LIT38_20185	COG0404	The glycine cleavage system catalyzes the degradation of glycine
LIT38_20190	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
LIT38_20230	COG4537	Required for transformation and DNA binding
LIT38_20235	COG1459	type II secretion system
LIT38_20310	COG0860	N-Acetylmuramoyl-L-alanine amidase
LIT38_20355	COG5280	Phage tail tape measure protein TP901
LIT38_20355	COG3953	SLT domain
LIT38_20400	COG0740	serine-type endopeptidase activity
LIT38_20440	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
LIT38_20445	COG0582	viral genome integration into host DNA
LIT38_20455	COG3617	BRO family, N-terminal domain
LIT38_20510	COG1396	sequence-specific DNA binding
LIT38_20525	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LIT38_20535	COG1393	Belongs to the ArsC family
LIT38_20555	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LIT38_20570	COG0011	TIGRFAM Protein of
LIT38_20585	COG1940	carbohydrate kinase activity
LIT38_20595	COG0697	spore germination
LIT38_20600	COG0457	Tetratricopeptide repeat
LIT38_20600	COG0705	Rhomboid family
LIT38_20620	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
LIT38_20655	COG0704	Plays a role in the regulation of phosphate uptake
LIT38_20660	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
LIT38_20665	COG0581	inorganic phosphate transmembrane transporter activity
LIT38_20670	COG0573	inorganic phosphate transmembrane transporter activity
LIT38_20675	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
LIT38_20680	COG0768	penicillin binding
LIT38_20685	COG0477	Major facilitator Superfamily
LIT38_20695	COG2839	Protein conserved in bacteria
LIT38_20700	COG1283	sodium-dependent phosphate transmembrane transporter activity
LIT38_20705	COG5521	maltodextrose utilization protein MalA
LIT38_20720	COG4709	membrane
LIT38_20725	COG5663	Belongs to the 5'(3')-deoxyribonucleotidase family
LIT38_20730	COG0735	belongs to the Fur family
LIT38_20735	COG1108	ABC-type Mn2 Zn2 transport systems permease components
LIT38_20740	COG1121	(ABC) transporter
LIT38_20750	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
LIT38_20765	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
LIT38_20770	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
LIT38_20775	COG2384	SAM-dependent methyltransferase
LIT38_20780	COG2010	Cytochrome c
LIT38_20785	COG1960	acyl-CoA dehydrogenase activity
LIT38_20790	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
LIT38_20795	COG0358	DNA primase activity
LIT38_20800	COG1671	Belongs to the UPF0178 family
LIT38_20810	COG0517	IMP dehydrogenase activity
LIT38_20815	COG0751	glycine-tRNA ligase activity
LIT38_20820	COG0752	glycyl-tRNA synthetase alpha subunit
LIT38_20825	COG1381	Involved in DNA repair and RecF pathway recombination
LIT38_20835	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
LIT38_20840	COG0295	cytidine deaminase activity
LIT38_20850	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
LIT38_20860	COG1480	7TM receptor with intracellular HD hydrolase
LIT38_20865	COG1702	phosphate starvation-inducible protein PhoH
LIT38_20890	COG1030	water channel activity
LIT38_20895	COG1610	YqeY-like protein
LIT38_20905	COG1283	sodium-dependent phosphate transmembrane transporter activity
LIT38_20910	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
LIT38_20915	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
LIT38_20920	COG1385	rRNA (uridine-N3-)-methyltransferase activity
LIT38_20925	COG2264	protein methyltransferase activity
LIT38_20935	COG0443	Heat shock 70 kDa protein
LIT38_20940	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
LIT38_20945	COG1420	regulation of RNA biosynthetic process
LIT38_20950	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LIT38_20955	COG0481	GTPase activity
LIT38_20965	COG0860	N-Acetylmuramoyl-L-alanine amidase
LIT38_20975	COG0268	Binds directly to 16S ribosomal RNA
LIT38_20980	COG1466	dna polymerase III delta subunit
LIT38_20990	COG0658	competence protein
LIT38_20990	COG2333	competence protein COMEC
LIT38_20995	COG2131	deaminase
LIT38_21000	COG1555	photosystem II stabilization
LIT38_21000	COG1596	polysaccharide export
LIT38_21005	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
LIT38_21010	COG2226	methyltransferase
LIT38_21015	COG0799	negative regulation of ribosome biogenesis
LIT38_21020	COG1713	HD superfamily hydrolase involved in NAD metabolism
LIT38_21025	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
LIT38_21030	COG1534	Rna-binding protein
LIT38_21040	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
LIT38_21045	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
LIT38_21055	COG0688	phosphatidylethanolamine metabolic process
LIT38_21065	COG1183	phosphatidylcholine synthase activity
LIT38_21105	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
LIT38_21120	COG0768	penicillin binding
LIT38_21125	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
LIT38_21130	COG0572	uridine kinase
LIT38_21135	COG0826	peptidase U32
LIT38_21140	COG0826	peptidase U32
LIT38_21145	COG4122	O-methyltransferase activity
LIT38_21150	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
LIT38_21155	COG3906	Belongs to the UPF0473 family
LIT38_21165	COG4472	Bacterial protein of unknown function (DUF965)
LIT38_21175	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
LIT38_21180	COG0628	permease
LIT38_21195	COG3881	PFAM PRC-barrel domain
LIT38_21210	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
LIT38_21225	COG1104	cysteine desulfurase activity
LIT38_21230	COG1959	2 iron, 2 sulfur cluster binding
LIT38_21235	COG2364	Membrane
LIT38_21240	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
LIT38_21245	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
LIT38_21250	COG1131	(ABC) transporter
LIT38_21260	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
LIT38_21270	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
LIT38_21275	COG0124	histidyl-tRNA synthetase
LIT38_21285	COG0860	N-Acetylmuramoyl-L-alanine amidase
LIT38_21285	COG3103	Sh3 type 3 domain protein
LIT38_21285	COG4991	sh3 domain protein
LIT38_21290	COG1490	D-aminoacyl-tRNA deacylase activity
LIT38_21295	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
LIT38_21300	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
LIT38_21305	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
LIT38_21305	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
LIT38_21310	COG5416	Lipopolysaccharide assembly protein A domain
LIT38_21315	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
LIT38_21320	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LIT38_21320	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LIT38_21330	COG2244	polysaccharide biosynthetic process
LIT38_21335	COG2323	membrane
LIT38_21345	COG1862	Preprotein translocase
LIT38_21350	COG0343	queuine tRNA-ribosyltransferase activity
LIT38_21355	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
LIT38_21365	COG2255	four-way junction helicase activity
LIT38_21370	COG0632	four-way junction helicase activity
LIT38_21375	COG0582	viral genome integration into host DNA
LIT38_21405	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
LIT38_21410	COG0157	Belongs to the NadC ModD family
LIT38_21415	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
LIT38_21420	COG1104	cysteine desulfurase activity
LIT38_21425	COG1827	regulation of RNA biosynthetic process
LIT38_21430	COG0077	Prephenate dehydratase
LIT38_21435	COG4492	Belongs to the UPF0735 family
LIT38_21440	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
LIT38_21445	COG3290	protein histidine kinase activity
LIT38_21450	COG0211	Belongs to the bacterial ribosomal protein bL27 family
LIT38_21455	COG2868	ribosomal protein
LIT38_21460	COG0261	This protein binds to 23S rRNA in the presence of protein L20
LIT38_21465	COG1530	ribonuclease E activity
LIT38_21470	COG1994	Peptidase M50
LIT38_21475	COG0739	heme binding
LIT38_21480	COG2894	cell division
LIT38_21485	COG0850	regulation of cytokinetic process
LIT38_21495	COG1792	Involved in formation and maintenance of cell shape
LIT38_21500	COG1077	Cell shape determining protein MreB Mrl
LIT38_21510	COG0424	maF-like protein
LIT38_21520	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
LIT38_21530	COG0285	dihydrofolate synthase activity
LIT38_21535	COG0525	valine-tRNA ligase activity
LIT38_21545	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
LIT38_21550	COG1388	LysM domain
LIT38_21550	COG1388	LysM domain
LIT38_21555	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
LIT38_21560	COG0113	porphobilinogen synthase activity
LIT38_21570	COG0181	hydroxymethylbilane synthase activity
LIT38_21575	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
LIT38_21595	COG0765	amino acid transport
LIT38_21600	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LIT38_21615	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
LIT38_21620	COG0470	DNA polymerase III
LIT38_21620	COG1067	ATP-dependent peptidase activity
LIT38_21625	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
LIT38_21630	COG0544	peptidyl-prolyl cis-trans isomerase activity
LIT38_21635	COG1477	protein flavinylation
LIT38_21635	COG0457	Tetratricopeptide repeat
LIT38_21640	COG0066	3-isopropylmalate dehydratase activity
LIT38_21645	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
LIT38_21650	COG0473	3-isopropylmalate dehydrogenase activity
LIT38_21655	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
LIT38_21660	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
LIT38_21665	COG0440	acetolactate synthase activity
LIT38_21670	COG0028	Belongs to the TPP enzyme family
LIT38_21680	COG0622	Phosphoesterase
LIT38_21685	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
LIT38_21695	COG5401	PFAM Sporulation and spore germination
LIT38_21700	COG0514	ATP-dependent DNA helicase (RecQ)
LIT38_21710	COG1846	Transcriptional regulator
LIT38_21715	COG2197	response regulator
LIT38_21720	COG0824	Thioesterase
LIT38_21725	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
LIT38_21730	COG1053	succinate dehydrogenase
LIT38_21735	COG2009	succinate dehydrogenase
LIT38_21740	COG1719	4-vinyl reductase, 4VR
LIT38_21750	COG0322	excinuclease ABC activity
LIT38_21755	COG3118	belongs to the thioredoxin family
LIT38_21760	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
LIT38_21765	COG2086	electron transfer activity
LIT38_21770	COG1024	Enoyl-CoA hydratase
LIT38_21775	COG1309	transcriptional regulator
LIT38_21780	COG0318	PFAM AMP-dependent synthetase and ligase
LIT38_21785	COG3766	membrane
LIT38_21795	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
LIT38_21795	COG1796	DNA polymerase
LIT38_21800	COG1286	toxin biosynthetic process
LIT38_21805	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
LIT38_21810	COG1039	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
LIT38_21815	COG0072	phenylalanine-tRNA ligase activity
LIT38_21815	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LIT38_21820	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
LIT38_21830	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LIT38_21840	COG1363	Peptidase, m42
LIT38_21860	COG3326	Membrane
LIT38_21865	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
LIT38_21875	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
LIT38_21880	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
LIT38_21890	COG1484	DNA-dependent DNA replication
LIT38_21895	COG3611	Membrane attachment protein
LIT38_21900	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
LIT38_21910	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
LIT38_21915	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
LIT38_21920	COG0237	dephospho-CoA kinase activity
LIT38_21925	COG1971	Probably functions as a manganese efflux pump
LIT38_21930	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
LIT38_21935	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LIT38_21935	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LIT38_21940	COG0330	HflC and HflK could
LIT38_21945	COG0330	HflC and HflK could
LIT38_21950	COG5002	protein histidine kinase activity
LIT38_21955	COG0745	RESPONSE REGULATOR receiver
LIT38_21965	COG0039	L-malate dehydrogenase activity
LIT38_21970	COG0538	isocitrate dehydrogenase activity
LIT38_21975	COG0372	Belongs to the citrate synthase family
LIT38_21980	COG2707	UPF0756 membrane protein
LIT38_21985	COG0628	permease
LIT38_22000	COG0205	6-phosphofructokinase activity
LIT38_22005	COG0825	malonyl-CoA metabolic process
LIT38_22010	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
LIT38_22015	COG2186	Transcriptional regulator
LIT38_22020	COG0281	malic enzyme
LIT38_22025	COG0587	DNA-directed DNA polymerase activity
LIT38_22040	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
LIT38_22050	COG4109	DRTGG domain
LIT38_22060	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
LIT38_22065	COG0006	proline dipeptidase activity
LIT38_22080	COG0589	response to stress
LIT38_22085	COG0165	Argininosuccinate lyase
LIT38_22090	COG0137	argininosuccinate synthase activity
LIT38_22095	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
LIT38_22105	COG0521	Mo-molybdopterin cofactor biosynthetic process
LIT38_22115	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
LIT38_22120	COG0827	DNA restriction-modification system
LIT38_22125	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
LIT38_22130	COG3874	Sporulation protein YtfJ
LIT38_22140	COG1714	RDD family
LIT38_22145	COG0616	signal peptide processing
LIT38_22150	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
LIT38_22155	COG2962	Rard protein
LIT38_22160	COG1574	metal-dependent hydrolase with the TIM-barrel fold
LIT38_22165	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LIT38_22175	COG0301	tRNA thio-modification
LIT38_22180	COG1104	cysteine desulfurase activity
LIT38_22185	COG1114	Component of the transport system for branched-chain amino acids
LIT38_22190	COG4477	modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
LIT38_22195	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
LIT38_22200	COG1309	transcriptional regulator
LIT38_22205	COG1956	GAF domain-containing protein
LIT38_22210	COG0626	cystathionine gamma-synthase activity
LIT38_22215	COG2199	diguanylate cyclase activity
LIT38_22215	COG2203	Gaf domain
LIT38_22220	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
LIT38_22235	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LIT38_22240	COG0454	-acetyltransferase
LIT38_22245	COG0517	IMP dehydrogenase activity
LIT38_22250	COG0123	including yeast histone deacetylase and acetoin utilization protein
LIT38_22270	COG1605	Chorismate mutase
LIT38_22270	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
LIT38_22275	COG0849	cell division
LIT38_22280	COG3118	belongs to the thioredoxin family
LIT38_22285	COG4980	gas vesicle protein
LIT38_22290	COG4768	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
LIT38_22295	COG2309	aminopeptidase activity
LIT38_22300	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
LIT38_22315	COG1674	ftsk spoiiie
LIT38_22320	COG4848	Belongs to the UPF0354 family
LIT38_22325	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LIT38_22345	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
LIT38_22350	COG1363	Peptidase, m42
LIT38_22355	COG5584	Small secreted protein
LIT38_22360	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LIT38_22365	COG0220	tRNA (guanine-N7-)-methyltransferase activity
LIT38_22375	COG0510	thiamine kinase activity
LIT38_22380	COG1523	belongs to the glycosyl hydrolase 13 family
LIT38_22385	COG1597	lipid kinase activity
LIT38_22400	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
LIT38_22410	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LIT38_22415	COG4473	ABC transporter
LIT38_22420	COG1131	(ABC) transporter
LIT38_22430	COG1349	DNA-binding transcription factor activity
LIT38_22435	COG1187	pseudouridine synthase activity
LIT38_22440	COG2244	polysaccharide biosynthetic process
LIT38_22445	COG2081	HI0933 family
LIT38_22455	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LIT38_22460	COG0495	leucyl-tRNA aminoacylation
LIT38_22465	COG1028	Short-chain dehydrogenase reductase Sdr
LIT38_22470	COG2610	gluconate transmembrane transporter activity
LIT38_22485	COG2814	Major facilitator Superfamily
LIT38_22500	COG1242	4 iron, 4 sulfur cluster binding
LIT38_22505	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
LIT38_22515	COG2267	carboxylic ester hydrolase activity
LIT38_22520	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
LIT38_22525	COG4990	cell redox homeostasis
LIT38_22530	COG0367	asparagine synthase
LIT38_22535	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
LIT38_22555	COG1506	peptidase
LIT38_22560	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LIT38_22565	COG1116	anion transmembrane transporter activity
LIT38_22570	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LIT38_22575	COG0494	nUDIX hydrolase
LIT38_22595	COG0783	Belongs to the Dps family
LIT38_22605	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LIT38_22615	COG1854	S-ribosylhomocysteine lyase activity
LIT38_22620	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
LIT38_22625	COG0288	reversible hydration of carbon dioxide
LIT38_22635	COG1271	oxidase subunit
LIT38_22640	COG1294	oxidase, subunit
LIT38_22650	COG4948	Mandelate Racemase Muconate Lactonizing
LIT38_22655	COG0318	PFAM AMP-dependent synthetase and ligase
LIT38_22660	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
LIT38_22665	COG0596	Alpha beta hydrolase
LIT38_22670	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
LIT38_22675	COG1169	isochorismate synthase
LIT38_22680	COG1575	Belongs to the MenA family. Type 1 subfamily
LIT38_22685	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
LIT38_22695	COG1834	amidinotransferase
LIT38_22700	COG0058	SHG alpha-glucan phosphorylase activity
LIT38_22705	COG0297	glycogen (starch) synthase activity
LIT38_22710	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
LIT38_22715	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
LIT38_22855	COG1285	pathogenesis
LIT38_22865	COG1294	oxidase, subunit
LIT38_22870	COG1271	oxidase subunit
LIT38_22875	COG0702	epimerase
LIT38_22880	COG2112	serine threonine protein kinase
LIT38_22890	COG2936	dipeptidyl-peptidase activity
LIT38_22895	COG2234	aminopeptidase activity
LIT38_22905	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
LIT38_22925	COG1979	alcohol dehydrogenase
LIT38_22930	COG2155	Conserved Protein
LIT38_22935	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
LIT38_22940	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
LIT38_22945	COG1012	belongs to the aldehyde dehydrogenase family
LIT38_22950	COG3829	transcription factor binding
LIT38_22960	COG1757	Na H antiporter
LIT38_22965	COG1098	S1 RNA binding domain
LIT38_22975	COG0436	Aminotransferase
LIT38_22980	COG1522	sequence-specific DNA binding
LIT38_22985	COG2267	carboxylic ester hydrolase activity
LIT38_22995	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
LIT38_23010	COG2032	superoxide dismutase activity
LIT38_23020	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
LIT38_23030	COG5018	Exonuclease
LIT38_23035	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LIT38_23040	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LIT38_23060	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
LIT38_23060	COG2111	Na H antiporter
LIT38_23065	COG2111	Na H antiporter
LIT38_23070	COG1006	Multisubunit Na H antiporter MnhC subunit
LIT38_23075	COG0651	ATP synthesis coupled electron transport
LIT38_23080	COG1863	multisubunit Na H antiporter MnhE subunit
LIT38_23085	COG2212	antiporter activity
LIT38_23090	COG1320	monovalent cation:proton antiporter activity
LIT38_23095	COG2050	protein possibly involved in aromatic compounds catabolism
LIT38_23120	COG0686	Belongs to the AlaDH PNT family
LIT38_23125	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
LIT38_23125	COG2508	Transcriptional regulator
LIT38_23130	COG1115	amino acid carrier protein
LIT38_23155	COG0671	phosphoesterase, PA-phosphatase related
LIT38_23160	COG0789	Transcriptional regulator
LIT38_23165	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
LIT38_23170	COG2056	Na+-H+ antiporter family
LIT38_23175	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
LIT38_23195	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
LIT38_23205	COG3584	3D domain protein
LIT38_23220	COG0494	nUDIX hydrolase
LIT38_23225	COG1252	NADH dehydrogenase
LIT38_23235	COG0316	Belongs to the HesB IscA family
LIT38_23245	COG4844	belongs to the
LIT38_23250	COG1252	NADH dehydrogenase
LIT38_23255	COG4837	Protein of unknown function (DUF1462)
LIT38_23270	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
LIT38_23275	COG0460	homoserine dehydrogenase
LIT38_23280	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
LIT38_23285	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
LIT38_23290	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
LIT38_23295	COG0647	UMP catabolic process
LIT38_23300	COG1349	DNA-binding transcription factor activity
LIT38_23305	COG2445	Protein of unknown function DUF86
LIT38_23310	COG5001	Diguanylate cyclase
LIT38_23310	COG3300	MHYT domain
LIT38_23325	COG4470	Protein conserved in bacteria
LIT38_23340	COG0739	heme binding
LIT38_23350	COG0733	neurotransmitter:sodium symporter activity
LIT38_23355	COG3861	electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity
LIT38_23360	COG1757	Na H antiporter
LIT38_23375	COG3377	Domain of unknown function (DUF1805)
LIT38_23380	COG1801	Protein of unknown function DUF72
LIT38_23390	COG0531	amino acid
LIT38_23395	COG0697	spore germination
LIT38_23400	COG0719	Fe-S assembly protein
LIT38_23405	COG0822	iron-sulfur transferase activity
LIT38_23410	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
LIT38_23415	COG0719	Fe-S assembly protein
LIT38_23420	COG0396	ATPase activity
LIT38_23430	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
LIT38_23435	COG1464	Belongs to the NlpA lipoprotein family
LIT38_23440	COG2011	ABC-type metal ion transport system permease component
LIT38_23445	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
LIT38_23450	COG2873	o-acetylhomoserine
LIT38_23465	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LIT38_23470	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
LIT38_23480	COG0509	glycine decarboxylation via glycine cleavage system
LIT38_23485	COG1393	Belongs to the ArsC family
LIT38_23490	COG1960	acyl-CoA dehydrogenase activity
LIT38_23495	COG0183	Belongs to the thiolase family
LIT38_23500	COG1250	3-hydroxyacyl-CoA dehydrogenase
LIT38_23500	COG1024	Enoyl-CoA hydratase
LIT38_23530	COG1120	ATPase activity
LIT38_23535	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LIT38_23540	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LIT38_23545	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
LIT38_23565	COG0772	Belongs to the SEDS family
LIT38_23580	COG0860	N-Acetylmuramoyl-L-alanine amidase
LIT38_23590	COG1028	Short-chain dehydrogenase reductase Sdr
LIT38_23600	COG1126	abc transporter atp-binding protein
LIT38_23605	COG0765	amino acid transport
LIT38_23610	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LIT38_23625	COG0242	peptide deformylase activity
LIT38_23650	COG4990	cell redox homeostasis
LIT38_23655	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
LIT38_23660	COG0300	oxidoreductase activity
LIT38_23665	COG1033	growth of symbiont in host cell
LIT38_23665	COG2409	Drug exporters of the RND superfamily
LIT38_23670	COG1846	Transcriptional regulator
LIT38_23680	COG0655	NAD(P)H dehydrogenase (quinone) activity
LIT38_23685	COG0668	transmembrane transport
LIT38_23690	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
LIT38_23695	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
LIT38_23710	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
LIT38_23715	COG0557	exoribonuclease II activity
LIT38_23720	COG1647	Serine aminopeptidase, S33
LIT38_23725	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
LIT38_23740	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
LIT38_23755	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
LIT38_23770	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
LIT38_23785	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LIT38_23790	COG1481	regulation of sporulation
LIT38_23795	COG0391	Required for morphogenesis under gluconeogenic growth conditions
LIT38_23800	COG1660	Displays ATPase and GTPase activities
LIT38_23805	COG1051	belongs to the nudix hydrolase family
LIT38_23810	COG0492	ferredoxin-NADP+ reductase activity
LIT38_23815	COG0457	Tetratricopeptide repeat
LIT38_23820	COG1115	amino acid carrier protein
LIT38_23825	COG1012	belongs to the aldehyde dehydrogenase family
LIT38_23830	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LIT38_23835	COG3938	Belongs to the proline racemase family
LIT38_23840	COG3938	Belongs to the proline racemase family
LIT38_23845	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LIT38_23850	COG3290	protein histidine kinase activity
LIT38_23850	COG3829	transcription factor binding
LIT38_23870	COG0140	phosphoribosyl-ATP diphosphatase activity
LIT38_23870	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
LIT38_23875	COG0107	imidazoleglycerol-phosphate synthase activity
LIT38_23880	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
LIT38_23885	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
LIT38_23890	COG0131	Imidazoleglycerol-phosphate dehydratase
LIT38_23895	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
LIT38_23900	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
LIT38_23905	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
LIT38_23910	COG0110	maltose O-acetyltransferase activity
LIT38_23920	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
LIT38_23925	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
LIT38_23930	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
LIT38_23935	COG1263	PTS System
LIT38_23935	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LIT38_23945	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
LIT38_23950	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
LIT38_23955	COG0363	glucosamine-6-phosphate deaminase activity
LIT38_23960	COG2188	Transcriptional regulator
LIT38_23970	COG1950	PFAM Membrane protein of
LIT38_23980	COG3595	metallopeptidase activity
LIT38_24000	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
LIT38_24005	COG0556	nucleotide-excision repair
LIT38_24010	COG4897	Protein conserved in bacteria
LIT38_24025	COG1464	Belongs to the NlpA lipoprotein family
LIT38_24030	COG2011	ABC-type metal ion transport system permease component
LIT38_24035	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
LIT38_24040	COG0697	spore germination
LIT38_24045	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LIT38_24050	COG4191	Histidine kinase
LIT38_24060	COG0628	permease
LIT38_24080	COG0297	glycogen (starch) synthase activity
LIT38_24080	COG0438	transferase activity, transferring glycosyl groups
LIT38_24090	COG0662	Cupin 2, conserved barrel domain protein
LIT38_24090	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
LIT38_24095	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LIT38_24100	COG3409	Peptidoglycan-binding domain 1 protein
LIT38_24100	COG0793	Belongs to the peptidase S41A family
LIT38_24105	COG0791	NLP P60 protein
LIT38_24105	COG3883	PFAM NLP P60 protein
LIT38_24110	COG2177	Part of the ABC transporter FtsEX involved in
LIT38_24115	COG2884	Cell division ATP-binding protein ftsE
LIT38_24125	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
LIT38_24140	COG0653	protein targeting
LIT38_24150	COG1405	negative regulation of cell septum assembly
LIT38_24150	COG3012	SEC-C Motif Domain Protein
LIT38_24155	COG2059	Chromate
LIT38_24160	COG2059	Chromate
LIT38_24180	COG0784	Response regulator, receiver
LIT38_24185	COG4191	Histidine kinase
LIT38_24195	COG1115	amino acid carrier protein
LIT38_24200	COG1744	ABC transporter substrate-binding protein PnrA-like
LIT38_24205	COG0840	transmembrane signaling receptor activity
LIT38_24230	COG1516	flagellar protein fliS
LIT38_24235	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
LIT38_24240	COG1334	flagellar protein FlaG
LIT38_24245	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
LIT38_24250	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
LIT38_24255	COG1699	Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum
LIT38_24265	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
LIT38_24270	COG1256	bacterial-type flagellum assembly
LIT38_24270	COG4786	Flagellar basal body rod
LIT38_24290	COG5001	Diguanylate cyclase
LIT38_24295	COG1040	competence protein
LIT38_24300	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
LIT38_24305	COG1307	EDD domain protein, DegV family
LIT38_24315	COG2197	response regulator
LIT38_24320	COG4585	Histidine kinase
LIT38_24325	COG1739	Uncharacterized protein family UPF0029
LIT38_24330	COG1316	TRANSCRIPTIONal
LIT38_24335	COG0860	N-Acetylmuramoyl-L-alanine amidase
LIT38_24345	COG2247	cell wall binding repeat
LIT38_24345	COG2385	sporulation resulting in formation of a cellular spore
LIT38_24355	COG0438	transferase activity, transferring glycosyl groups
LIT38_24380	COG0673	inositol 2-dehydrogenase activity
LIT38_24390	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
LIT38_24395	COG1368	sulfuric ester hydrolase activity
LIT38_24405	COG1595	DNA-templated transcription, initiation
LIT38_24420	COG0438	transferase activity, transferring glycosyl groups
LIT38_24425	COG3307	-O-antigen
LIT38_24445	COG2247	cell wall binding repeat
LIT38_24445	COG2385	sporulation resulting in formation of a cellular spore
LIT38_24485	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
LIT38_24490	COG0110	maltose O-acetyltransferase activity
LIT38_24495	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
LIT38_24505	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
LIT38_24520	COG0438	transferase activity, transferring glycosyl groups
LIT38_24545	COG0673	inositol 2-dehydrogenase activity
LIT38_24555	COG4464	protein tyrosine phosphatase activity
LIT38_24560	COG0489	protein tyrosine kinase activity
LIT38_24565	COG3944	biosynthesis protein
LIT38_24590	COG3764	Sortase (surface protein transpeptidase)
LIT38_24595	COG0860	N-Acetylmuramoyl-L-alanine amidase
LIT38_24595	COG2247	cell wall binding repeat
LIT38_24605	COG0737	Belongs to the 5'-nucleotidase family
LIT38_24610	COG2247	cell wall binding repeat
LIT38_24610	COG0860	N-Acetylmuramoyl-L-alanine amidase
LIT38_24645	COG1388	LysM domain
LIT38_24645	COG0791	NLP P60 protein
LIT38_24670	COG0786	glutamate:sodium symporter activity
LIT38_24675	COG0010	Belongs to the arginase family
LIT38_24680	COG0583	DNA-binding transcription factor activity
LIT38_24685	COG1288	antiporter activity
LIT38_24690	COG0768	penicillin binding
LIT38_24700	COG0473	3-isopropylmalate dehydrogenase activity
LIT38_24705	COG1028	Short-chain dehydrogenase reductase Sdr
LIT38_24720	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
LIT38_24725	COG0183	Belongs to the thiolase family
LIT38_24730	COG1960	acyl-CoA dehydrogenase activity
LIT38_24735	COG1024	Enoyl-CoA hydratase
LIT38_24740	COG1250	3-hydroxyacyl-CoA dehydrogenase
LIT38_24750	COG2358	TRAP transporter, solute receptor (TAXI family
LIT38_24755	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
LIT38_24760	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
LIT38_24770	COG3290	protein histidine kinase activity
LIT38_24770	COG3829	transcription factor binding
LIT38_24775	COG3037	sugar-specific permease SgaT UlaA
LIT38_24800	COG0165	Argininosuccinate lyase
LIT38_24810	COG3842	ATPase activity
LIT38_24815	COG1840	ABC-type Fe3 transport system, periplasmic component
LIT38_24845	COG0840	transmembrane signaling receptor activity
LIT38_24855	COG1012	belongs to the aldehyde dehydrogenase family
LIT38_24860	COG2610	gluconate transmembrane transporter activity
LIT38_24870	COG3829	transcription factor binding
LIT38_24870	COG3290	protein histidine kinase activity
LIT38_24880	COG1288	antiporter activity
LIT38_24895	COG1363	Peptidase, m42
LIT38_24900	COG0747	negative chemotaxis
LIT38_24905	COG0402	S-adenosylhomocysteine deaminase activity
LIT38_24910	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
LIT38_24930	COG1473	amidohydrolase
LIT38_24955	COG1609	Transcriptional regulator
LIT38_24970	COG0395	ABC-type sugar transport system, permease component
LIT38_24975	COG4209	transmembrane transport
LIT38_24980	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LIT38_25015	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LIT38_25025	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
LIT38_25030	COG1473	amidohydrolase
LIT38_25055	COG0737	Belongs to the 5'-nucleotidase family
LIT38_25065	COG1388	LysM domain
LIT38_25065	COG3584	3D domain protein
LIT38_25070	COG3409	Peptidoglycan-binding domain 1 protein
LIT38_25070	COG3773	Cell wall hydrolase
LIT38_25080	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
LIT38_25085	COG3457	Alanine racemase
LIT38_25090	COG0626	cystathionine gamma-synthase activity
LIT38_25095	COG1735	metal-dependent hydrolase with the TIM-barrel fold
LIT38_25115	COG2188	Transcriptional regulator
LIT38_25120	COG0840	transmembrane signaling receptor activity
LIT38_25145	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
LIT38_25160	COG0629	single-stranded DNA binding
LIT38_25185	COG4786	Flagellar basal body rod
LIT38_25190	COG4786	Flagellar basal body rod
LIT38_25195	COG1077	Cell shape determining protein MreB Mrl
LIT38_25200	COG1609	Transcriptional regulator
LIT38_25205	COG1388	LysM domain
LIT38_25205	COG1705	Flagellar rod assembly protein muramidase FlgJ
LIT38_25210	COG2176	DNA-directed DNA polymerase activity
LIT38_25215	COG0617	tRNA 3'-terminal CCA addition
LIT38_25215	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
LIT38_25215	COG0517	IMP dehydrogenase activity
LIT38_25220	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LIT38_25235	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
LIT38_25240	COG0739	heme binding
LIT38_25250	COG2385	sporulation resulting in formation of a cellular spore
LIT38_25255	COG0583	DNA-binding transcription factor activity
LIT38_25260	COG1053	succinate dehydrogenase
LIT38_25280	COG3181	Tripartite tricarboxylate transporter family receptor
LIT38_25285	COG4565	transcriptional regulatory protein
LIT38_25290	COG3290	protein histidine kinase activity
LIT38_25305	COG4836	Membrane
LIT38_25310	COG1007	ATP synthesis coupled electron transport
LIT38_25315	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LIT38_25320	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
LIT38_25325	COG0713	ATP synthesis coupled electron transport
LIT38_25330	COG0839	Belongs to the complex I subunit 6 family
LIT38_25340	COG1005	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient. This subunit may bind ubiquinone
LIT38_25345	COG0649	NAD binding
LIT38_25350	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LIT38_25355	COG0377	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LIT38_25360	COG0838	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LIT38_25365	COG1388	LysM domain
LIT38_25365	COG3584	3D domain protein
LIT38_25380	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
LIT38_25385	COG0355	proton-transporting ATP synthase activity, rotational mechanism
LIT38_25390	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
LIT38_25395	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
LIT38_25405	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
LIT38_25410	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
LIT38_25415	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
LIT38_25420	COG0356	it plays a direct role in the translocation of protons across the membrane
LIT38_25435	COG1404	Belongs to the peptidase S8 family
LIT38_25440	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
LIT38_25455	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
LIT38_25460	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
LIT38_25470	COG4475	Protein of unknown function (DUF436)
LIT38_25475	COG0698	ribose 5-phosphate isomerase
LIT38_25480	COG0840	transmembrane signaling receptor activity
LIT38_25490	COG1971	Probably functions as a manganese efflux pump
LIT38_25495	COG0009	L-threonylcarbamoyladenylate synthase
LIT38_25515	COG2890	protein-(glutamine-N5) methyltransferase activity
LIT38_25520	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
LIT38_25525	COG1802	Transcriptional regulator
LIT38_25530	COG0697	spore germination
LIT38_25540	COG1435	thymidine kinase activity
LIT38_25550	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
LIT38_25555	COG1494	fructose-1,6-bisphosphatase
LIT38_25565	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
LIT38_25570	COG0191	fructose-bisphosphate aldolase activity
LIT38_25575	COG2204	response regulator
LIT38_25580	COG4821	SIS domain
LIT38_25585	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
LIT38_25590	COG1028	Short-chain dehydrogenase reductase Sdr
LIT38_25595	COG1312	Catalyzes the dehydration of D-mannonate
LIT38_25605	COG1063	alcohol dehydrogenase
LIT38_25610	COG1593	TRAP-type C4-dicarboxylate transport system, large permease component
LIT38_25620	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
LIT38_25625	COG2055	Belongs to the LDH2 MDH2 oxidoreductase family
LIT38_25640	COG1609	Transcriptional regulator
LIT38_25645	COG0504	CTP synthase activity
LIT38_25660	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
LIT38_25660	COG1703	isobutyryl-CoA mutase activity
LIT38_25660	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
LIT38_25670	COG1960	acyl-CoA dehydrogenase activity
LIT38_25675	COG1960	acyl-CoA dehydrogenase activity
LIT38_25680	COG1250	3-hydroxyacyl-CoA dehydrogenase
LIT38_25685	COG0183	Belongs to the thiolase family
LIT38_25690	COG2181	nitrate reductase activity
LIT38_25690	COG0247	lactate metabolic process
LIT38_25695	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LIT38_25700	COG4294	response to UV
LIT38_25705	COG5553	Cysteine dioxygenase type I
LIT38_25710	COG0697	spore germination
LIT38_25720	COG0018	arginyl-trna synthetase
LIT38_25725	COG4506	Protein conserved in bacteria
LIT38_25730	COG0010	Belongs to the arginase family
LIT38_25735	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
LIT38_25740	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LIT38_25750	COG1994	Peptidase M50
LIT38_25765	COG3465	dGTPase activity
LIT38_25770	COG1078	dGTPase activity
LIT38_25775	COG4844	belongs to the
LIT38_25790	COG0280	phosphate acetyltransferase
LIT38_25795	COG3253	May function as heme-dependent peroxidase
LIT38_25805	COG2363	Small membrane protein
LIT38_25815	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
LIT38_25830	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
LIT38_25835	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
LIT38_25840	COG0314	molybdopterin synthase activity
LIT38_25845	COG0746	molybdenum cofactor guanylyltransferase activity
LIT38_25850	COG0351	phosphomethylpyrimidine kinase
LIT38_25855	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
LIT38_25865	COG0366	Alpha amylase catalytic
LIT38_25865	COG1874	Beta-galactosidase
LIT38_25875	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LIT38_25880	COG1131	(ABC) transporter
LIT38_25885	COG1511	domain protein
LIT38_25885	COG0842	Transport permease protein
LIT38_25900	COG0561	phosphatase activity
LIT38_25915	COG2031	fatty acid transporter
LIT38_25925	COG1131	(ABC) transporter
LIT38_25940	COG3314	Sporulation integral membrane protein YlbJ
LIT38_25955	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
LIT38_25960	COG0366	Alpha amylase catalytic
LIT38_25970	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LIT38_25985	COG2199	diguanylate cyclase activity
LIT38_25990	COG3104	oligopeptide transport
LIT38_25995	COG4297	protein containing double-stranded beta helix domain
LIT38_26000	COG2321	neutral zinc metallopeptidase
LIT38_26005	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LIT38_26020	COG0477	Major facilitator Superfamily
LIT38_26035	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LIT38_26040	COG1404	Belongs to the peptidase S8 family
LIT38_26045	COG0840	transmembrane signaling receptor activity
LIT38_26090	COG3708	Transcriptional regulator
LIT38_26090	COG2207	Transcriptional regulator
LIT38_26095	COG3620	sequence-specific DNA binding
LIT38_26100	COG0579	oxidoreductase
LIT38_26110	COG1621	beta-fructofuranosidase activity
LIT38_26135	COG1027	Aspartate ammonia-lyase
LIT38_26140	COG2169	Transcriptional regulator
LIT38_26150	COG1620	l-lactate permease
LIT38_26155	COG0039	L-malate dehydrogenase activity
LIT38_26165	COG0402	S-adenosylhomocysteine deaminase activity
LIT38_26170	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LIT38_26175	COG2814	Major facilitator Superfamily
LIT38_26200	COG1113	amino acid transport
LIT38_26225	COG4641	Protein conserved in bacteria
LIT38_26225	COG1388	LysM domain
LIT38_26230	COG1279	arginine transmembrane transporter activity
LIT38_26235	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LIT38_26240	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
LIT38_26250	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LIT38_26255	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
LIT38_26260	COG4853	Protein conserved in bacteria
LIT38_26265	COG4863	YycH protein
LIT38_26270	COG5002	protein histidine kinase activity
LIT38_26275	COG0745	RESPONSE REGULATOR receiver
LIT38_26305	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
LIT38_26310	COG0305	Participates in initiation and elongation during chromosome replication
LIT38_26315	COG0359	binds to the 23S rRNA
LIT38_26320	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
LIT38_26325	COG4241	membrane
LIT38_26330	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
LIT38_26335	COG0629	single-stranded DNA binding
LIT38_26340	COG0360	Binds together with S18 to 16S ribosomal RNA
LIT38_26345	COG0012	GTP binding
LIT38_26350	COG0243	molybdopterin cofactor binding
LIT38_26355	COG4481	Protein conserved in bacteria
LIT38_26360	COG0668	transmembrane transport
LIT38_26375	COG1475	DNA binding
LIT38_26380	COG1192	Involved in chromosome partitioning
LIT38_26385	COG1475	DNA binding
LIT38_26390	COG0357	Ribosomal RNA small subunit methyltransferase G
LIT38_26395	COG0445	tRNA wobble uridine modification
LIT38_26400	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
LIT38_26405	COG1847	R3H domain protein
LIT38_26415	COG0594	ribonuclease P activity
LIT38_26420	COG0230	Belongs to the bacterial ribosomal protein bL34 family