locus-tag	class	description
C3Y97_00010	COG0592	DNA-directed DNA polymerase activity
C3Y97_00015	COG2501	S4 domain
C3Y97_00025	COG0187	DNA topoisomerase II activity
C3Y97_00030	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
C3Y97_00065	COG0516	GMP reductase activity
C3Y97_00065	COG0517	IMP dehydrogenase activity
C3Y97_00070	COG1686	Belongs to the peptidase S11 family
C3Y97_00100	COG1428	Deoxynucleoside kinase
C3Y97_00105	COG1428	Deoxynucleoside kinase
C3Y97_00110	COG1335	isochorismatase
C3Y97_00120	COG0590	tRNA wobble adenosine to inosine editing
C3Y97_00130	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
C3Y97_00185	COG1982	Orn Lys Arg decarboxylase major
C3Y97_00195	COG0470	DNA polymerase III
C3Y97_00200	COG1774	PSP1 C-terminal conserved region
C3Y97_00210	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
C3Y97_00220	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
C3Y97_00225	COG2002	toxin-antitoxin pair type II binding
C3Y97_00235	COG0084	hydrolase, TatD family'
C3Y97_00255	COG4466	Protein conserved in bacteria
C3Y97_00270	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
C3Y97_00275	COG0251	oxidation-reduction process
C3Y97_00290	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
C3Y97_00305	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
C3Y97_00310	COG2002	toxin-antitoxin pair type II binding
C3Y97_00315	COG2244	polysaccharide biosynthetic process
C3Y97_00320	COG3956	TIGRFAM MazG family protein
C3Y97_00325	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
C3Y97_00345	COG1098	S1 RNA binding domain
C3Y97_00360	COG2208	phosphoserine phosphatase activity
C3Y97_00375	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
C3Y97_00390	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
C3Y97_00395	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
C3Y97_00400	COG0512	Glutamine amidotransferase of anthranilate synthase
C3Y97_00405	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
C3Y97_00410	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
C3Y97_00415	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
C3Y97_00420	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
C3Y97_00425	COG1396	sequence-specific DNA binding
C3Y97_00430	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
C3Y97_00520	COG3880	PFAM UvrB UvrC protein
C3Y97_00530	COG0542	response to heat
C3Y97_00535	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
C3Y97_00545	COG4956	integral membrane protein (PIN domain superfamily)
C3Y97_00565	COG1045	serine acetyltransferase
C3Y97_00580	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
C3Y97_00585	COG3688	RNA-binding protein containing a PIN domain
C3Y97_00595	COG0267	Belongs to the bacterial ribosomal protein bL33 family
C3Y97_00600	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
C3Y97_00605	COG0250	Participates in transcription elongation, termination and antitermination
C3Y97_00630	COG2813	Specifically methylates the guanine in position
C3Y97_00645	COG1358	cellular component organization or biogenesis
C3Y97_00755	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
C3Y97_00780	COG0201	protein transport
C3Y97_00790	COG0024	Methionine aminopeptidase
C3Y97_00800	COG0257	Belongs to the bacterial ribosomal protein bL36 family
C3Y97_00835	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
C3Y97_00860	COG0860	N-Acetylmuramoyl-L-alanine amidase
C3Y97_00865	COG0489	protein tyrosine kinase activity
C3Y97_00875	COG2194	sulfuric ester hydrolase activity
C3Y97_00880	COG0726	polysaccharide deacetylase
C3Y97_00960	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
C3Y97_00965	COG4856	YbbR-like protein
C3Y97_01005	COG1028	Short-chain dehydrogenase reductase Sdr
C3Y97_01010	COG2011	ABC-type metal ion transport system permease component
C3Y97_01015	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
C3Y97_01020	COG1464	Belongs to the NlpA lipoprotein family
C3Y97_01035	COG0277	FAD linked oxidase domain protein
C3Y97_01040	COG2271	Major facilitator Superfamily
C3Y97_01050	COG2814	Major facilitator Superfamily
C3Y97_01070	COG0601	transmembrane transport
C3Y97_01075	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
C3Y97_01080	COG0444	Belongs to the ABC transporter superfamily
C3Y97_01085	COG4608	Belongs to the ABC transporter superfamily
C3Y97_01090	COG4166	transmembrane transport
C3Y97_01100	COG2207	Transcriptional regulator
C3Y97_01115	COG4166	transmembrane transport
C3Y97_01120	COG4166	transmembrane transport
C3Y97_01125	COG0656	L-ascorbic acid biosynthetic process
C3Y97_01140	COG4149	molybdate abc transporter
C3Y97_01145	COG0725	ABC transporter, periplasmic molybdate-binding protein
C3Y97_01150	COG1910	domain protein
C3Y97_01170	COG0697	spore germination
C3Y97_01185	COG0204	Acyl-transferase
C3Y97_01200	COG1609	Transcriptional regulator
C3Y97_01210	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
C3Y97_01230	COG5298	Protein conserved in bacteria
C3Y97_01255	COG0488	(ABC) transporter
C3Y97_01270	COG0747	negative chemotaxis
C3Y97_01275	COG0601	transmembrane transport
C3Y97_01285	COG0444	Belongs to the ABC transporter superfamily
C3Y97_01290	COG4608	Belongs to the ABC transporter superfamily
C3Y97_01295	COG0561	phosphatase activity
C3Y97_01325	COG3185	4-Hydroxyphenylpyruvate dioxygenase
C3Y97_01330	COG0179	Fumarylacetoacetate (FAA) hydrolase
C3Y97_01340	COG0531	amino acid
C3Y97_01345	COG2814	Major facilitator Superfamily
C3Y97_01355	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
C3Y97_01365	COG4294	response to UV
C3Y97_01370	COG0705	Rhomboid family
C3Y97_01380	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
C3Y97_01385	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
C3Y97_01390	COG0864	Transcriptional regulator
C3Y97_01395	COG2337	Toxic component of a toxin-antitoxin (TA) module
C3Y97_01400	COG2183	response to ionizing radiation
C3Y97_01500	COG0802	atpase or kinase
C3Y97_01505	COG1214	PFAM Peptidase M22, glycoprotease
C3Y97_01510	COG0456	acetyltransferase
C3Y97_01520	COG0488	(ABC) transporter
C3Y97_01535	COG1266	CAAX protease self-immunity
C3Y97_01555	COG2252	PERMEase
C3Y97_01565	COG5002	protein histidine kinase activity
C3Y97_01595	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
C3Y97_01640	COG2205	protein histidine kinase activity
C3Y97_01645	COG0745	RESPONSE REGULATOR receiver
C3Y97_01675	COG2226	methyltransferase
C3Y97_01685	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
C3Y97_01695	COG1215	transferase activity, transferring glycosyl groups
C3Y97_01715	COG0697	spore germination
C3Y97_01745	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
C3Y97_01750	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
C3Y97_01755	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
C3Y97_01765	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
C3Y97_01780	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
C3Y97_01790	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
C3Y97_01800	COG0151	Belongs to the GarS family
C3Y97_01830	COG0210	DNA helicase
C3Y97_01840	COG4851	CamS sex pheromone cAM373 precursor
C3Y97_01855	COG1335	isochorismatase
C3Y97_01865	COG2011	ABC-type metal ion transport system permease component
C3Y97_01870	COG1464	Belongs to the NlpA lipoprotein family
C3Y97_01885	COG0003	Pfam Anion-transporting ATPase
C3Y97_01890	COG1846	Transcriptional regulator
C3Y97_01895	COG4682	membrane
C3Y97_01915	COG1597	lipid kinase activity
C3Y97_01925	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
C3Y97_01935	COG1012	belongs to the aldehyde dehydrogenase family
C3Y97_01940	COG2076	Multidrug Resistance protein
C3Y97_01950	COG2309	aminopeptidase activity
C3Y97_01965	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
C3Y97_01975	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
C3Y97_01980	COG4807	Protein conserved in bacteria
C3Y97_02010	COG1473	amidohydrolase
C3Y97_02025	COG0450	alkyl hydroperoxide reductase
C3Y97_02030	COG4857	Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate
C3Y97_02040	COG0235	Class ii aldolase
C3Y97_02045	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
C3Y97_02050	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
C3Y97_02055	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
C3Y97_02080	COG0166	Belongs to the GPI family
C3Y97_02105	COG5002	protein histidine kinase activity
C3Y97_02125	COG3541	Predicted nucleotidyltransferase
C3Y97_02130	COG2814	Major facilitator Superfamily
C3Y97_02135	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
C3Y97_02135	COG0723	plastoquinol--plastocyanin reductase activity
C3Y97_02145	COG0765	amino acid transport
C3Y97_02150	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C3Y97_02155	COG1126	abc transporter atp-binding protein
C3Y97_02160	COG0840	transmembrane signaling receptor activity
C3Y97_02185	COG0549	Belongs to the carbamate kinase family
C3Y97_02190	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
C3Y97_02200	COG0277	FAD linked oxidase domain protein
C3Y97_02205	COG0366	Alpha amylase catalytic
C3Y97_02210	COG1263	PTS System
C3Y97_02210	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
C3Y97_02210	COG2190	(PTS) system
C3Y97_02240	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
C3Y97_02260	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
C3Y97_02265	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
C3Y97_02270	COG1116	anion transmembrane transporter activity
C3Y97_02325	COG2270	Major facilitator Superfamily
C3Y97_02355	COG2310	stress, protein
C3Y97_02360	COG2310	stress, protein
C3Y97_02365	COG2310	stress, protein
C3Y97_02370	COG0861	Integral membrane protein TerC family
C3Y97_02380	COG3853	Toxic anion resistance protein (TelA)
C3Y97_02395	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
C3Y97_02405	COG1295	ribonuclease BN
C3Y97_02415	COG2217	Heavy metal translocating P-type atpase
C3Y97_02420	COG0697	spore germination
C3Y97_02430	COG0681	Belongs to the peptidase S26 family
C3Y97_02440	COG0586	Pfam SNARE associated Golgi protein
C3Y97_02455	COG3871	stress protein (general stress protein 26)
C3Y97_02460	COG0387	Pfam Sodium calcium exchanger
C3Y97_02470	COG0535	radical SAM domain protein
C3Y97_02490	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
C3Y97_02495	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
C3Y97_02520	COG3829	transcription factor binding
C3Y97_02530	COG0833	amino acid
C3Y97_02535	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
C3Y97_02570	COG1263	PTS System
C3Y97_02570	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
C3Y97_02575	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
C3Y97_02590	COG0463	Glycosyl transferase, family 2
C3Y97_02600	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
C3Y97_02600	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
C3Y97_02620	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
C3Y97_02640	COG1228	amidohydrolase
C3Y97_02645	COG1090	epimerase
C3Y97_02675	COG1988	membrane-bound metal-dependent
C3Y97_02680	COG1194	a g-specific adenine glycosylase
C3Y97_02705	COG1132	(ABC) transporter
C3Y97_02710	COG4129	membrane
C3Y97_02715	COG0067	glutamate synthase
C3Y97_02715	COG0070	glutamate synthase
C3Y97_02715	COG0069	glutamate synthase activity
C3Y97_02725	COG4555	ABC transporter
C3Y97_02745	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
C3Y97_02750	COG0735	belongs to the Fur family
C3Y97_02875	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
C3Y97_02900	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
C3Y97_02915	COG2766	serine protein kinase
C3Y97_02945	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
C3Y97_02955	COG1585	Membrane protein implicated in regulation of membrane protease activity
C3Y97_02960	COG2268	Band 7 protein
C3Y97_02970	COG3290	protein histidine kinase activity
C3Y97_02975	COG4565	transcriptional regulatory protein
C3Y97_02980	COG2851	Citrate transporter
C3Y97_03005	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
C3Y97_03010	COG3842	ATPase activity
C3Y97_03015	COG1175	transmembrane transport
C3Y97_03020	COG0395	ABC-type sugar transport system, permease component
C3Y97_03030	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
C3Y97_03035	COG0745	RESPONSE REGULATOR receiver
C3Y97_03040	COG5002	protein histidine kinase activity
C3Y97_03050	COG4990	cell redox homeostasis
C3Y97_03060	COG3290	protein histidine kinase activity
C3Y97_03065	COG4565	transcriptional regulatory protein
C3Y97_03070	COG3493	citrate carrier protein
C3Y97_03075	COG0281	malic enzyme
C3Y97_03085	COG0697	spore germination
C3Y97_03090	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
C3Y97_03100	COG5002	protein histidine kinase activity
C3Y97_03120	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
C3Y97_03125	COG3383	formate dehydrogenase (NAD+) activity
C3Y97_03130	COG2427	Protein of unknown function (DUF1641)
C3Y97_03145	COG0531	amino acid
C3Y97_03160	COG0640	Transcriptional regulator
C3Y97_03165	COG2217	Heavy metal translocating P-type atpase
C3Y97_03170	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
C3Y97_03185	COG3227	Zinc metalloprotease (Elastase)
C3Y97_03205	COG2720	vancomycin resistance protein
C3Y97_03210	COG1316	TRANSCRIPTIONal
C3Y97_03215	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
C3Y97_03220	COG0346	lactoylglutathione lyase activity
C3Y97_03225	COG1253	flavin adenine dinucleotide binding
C3Y97_03230	COG1027	Aspartate ammonia-lyase
C3Y97_03235	COG1620	l-lactate permease
C3Y97_03250	COG3104	oligopeptide transport
C3Y97_03255	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
C3Y97_03260	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
C3Y97_03265	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
C3Y97_03285	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
C3Y97_03295	COG4548	von Willebrand factor, type A
C3Y97_03300	COG0714	Associated with various cellular activities
C3Y97_03320	COG0531	amino acid
C3Y97_03325	COG2188	Transcriptional regulator
C3Y97_03330	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
C3Y97_03330	COG1263	PTS System
C3Y97_03335	COG0366	Alpha amylase catalytic
C3Y97_03350	COG0697	spore germination
C3Y97_03360	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
C3Y97_03365	COG1115	amino acid carrier protein
C3Y97_03375	COG1126	abc transporter atp-binding protein
C3Y97_03380	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C3Y97_03385	COG0765	amino acid transport
C3Y97_03390	COG0765	amino acid transport
C3Y97_03395	COG0833	amino acid
C3Y97_03420	COG2378	regulation of single-species biofilm formation
C3Y97_03425	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
C3Y97_03430	COG5002	protein histidine kinase activity
C3Y97_03455	COG0659	secondary active sulfate transmembrane transporter activity
C3Y97_03470	COG2271	Major facilitator Superfamily
C3Y97_03475	COG1846	Transcriptional regulator
C3Y97_03480	COG0477	Major facilitator Superfamily
C3Y97_03485	COG1609	Transcriptional regulator
C3Y97_03490	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
C3Y97_03505	COG1172	Belongs to the binding-protein-dependent transport system permease family
C3Y97_03510	COG1879	ABC-type sugar transport system periplasmic component
C3Y97_03535	COG1063	alcohol dehydrogenase
C3Y97_03585	COG0840	transmembrane signaling receptor activity
C3Y97_03590	COG3583	domain protein
C3Y97_03590	COG3584	3D domain protein
C3Y97_03595	COG1476	TRANSCRIPTIONal
C3Y97_03615	COG3104	oligopeptide transport
C3Y97_03620	COG1114	Component of the transport system for branched-chain amino acids
C3Y97_03635	COG1113	amino acid transport
C3Y97_03640	COG2252	PERMEase
C3Y97_03655	COG2153	protein acetylation
C3Y97_03665	COG0569	domain protein
C3Y97_03665	COG0475	glutathione-regulated potassium exporter activity
C3Y97_03680	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
C3Y97_03690	COG0833	amino acid
C3Y97_03695	COG4990	cell redox homeostasis
C3Y97_03710	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
C3Y97_03715	COG0697	spore germination
C3Y97_03720	COG0531	amino acid
C3Y97_03735	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
C3Y97_03740	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
C3Y97_03745	COG1918	ferrous iron import across plasma membrane
C3Y97_03745	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
C3Y97_03750	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
C3Y97_03755	COG0573	inorganic phosphate transmembrane transporter activity
C3Y97_03760	COG0581	inorganic phosphate transmembrane transporter activity
C3Y97_03770	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
C3Y97_03890	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
C3Y97_03915	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
C3Y97_03920	COG1116	anion transmembrane transporter activity
C3Y97_03925	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
C3Y97_03930	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
C3Y97_03935	COG0352	thiamine-phosphate diphosphorylase activity
C3Y97_03940	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
C3Y97_03945	COG2104	thiamine diphosphate biosynthetic process
C3Y97_03955	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
C3Y97_03960	COG0351	phosphomethylpyrimidine kinase
C3Y97_04000	COG2205	protein histidine kinase activity
C3Y97_04005	COG2814	Major facilitator Superfamily
C3Y97_04010	COG1846	Transcriptional regulator
C3Y97_04035	COG1136	(ABC) transporter
C3Y97_04050	COG1172	Belongs to the binding-protein-dependent transport system permease family
C3Y97_04055	COG1129	ABC transporter
C3Y97_04065	COG2252	PERMEase
C3Y97_04070	COG1028	Short-chain dehydrogenase reductase Sdr
C3Y97_04085	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
C3Y97_04090	COG1621	beta-fructofuranosidase activity
C3Y97_04095	COG1263	PTS System
C3Y97_04095	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
C3Y97_04100	COG1609	Transcriptional regulator
C3Y97_04150	COG0778	Nitroreductase
C3Y97_04155	COG2719	SpoVR family
C3Y97_04165	COG1414	Transcriptional regulator
C3Y97_04180	COG0446	pyridine nucleotide-disulphide oxidoreductase
C3Y97_04185	COG1937	Protein conserved in bacteria
C3Y97_04190	COG0425	Belongs to the sulfur carrier protein TusA family
C3Y97_04190	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
C3Y97_04195	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
C3Y97_04195	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
C3Y97_04200	COG0425	Belongs to the sulfur carrier protein TusA family
C3Y97_04205	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
C3Y97_04205	COG0425	Belongs to the sulfur carrier protein TusA family
C3Y97_04210	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
C3Y97_04215	COG2210	Belongs to the sulfur carrier protein TusA family
C3Y97_04220	COG0730	response to heat
C3Y97_04230	COG1316	TRANSCRIPTIONal
C3Y97_04235	COG0604	alcohol dehydrogenase
C3Y97_04240	COG1283	sodium-dependent phosphate transmembrane transporter activity
C3Y97_04260	COG3711	transcriptional antiterminator
C3Y97_04260	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
C3Y97_04265	COG1447	Phosphotransferase system cellobiose-specific component IIA
C3Y97_04270	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
C3Y97_04295	COG3584	3D domain protein
C3Y97_04295	COG1388	LysM domain
C3Y97_04300	COG0577	efflux transmembrane transporter activity
C3Y97_04305	COG1136	(ABC) transporter
C3Y97_04315	COG5522	Integral membrane protein (intg_mem_TP0381)
C3Y97_04330	COG1114	Component of the transport system for branched-chain amino acids
C3Y97_04335	COG3546	catalase activity
C3Y97_04370	COG0586	Pfam SNARE associated Golgi protein
C3Y97_04405	COG0531	amino acid
C3Y97_04410	COG0475	glutathione-regulated potassium exporter activity
C3Y97_04420	COG1737	Transcriptional regulator
C3Y97_04430	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
C3Y97_04430	COG1263	PTS System
C3Y97_04440	COG2259	Doxx family
C3Y97_04460	COG1522	sequence-specific DNA binding
C3Y97_04465	COG0165	Argininosuccinate lyase
C3Y97_04465	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
C3Y97_04470	COG1028	Short-chain dehydrogenase reductase Sdr
C3Y97_04480	COG2076	Multidrug Resistance protein
C3Y97_04490	COG1309	transcriptional regulator
C3Y97_04495	COG2814	Major facilitator Superfamily
C3Y97_04500	COG1733	regulation of RNA biosynthetic process
C3Y97_04540	COG0693	protein deglycase activity
C3Y97_04545	COG0693	protein deglycase activity
C3Y97_04545	COG0753	catalase activity
C3Y97_04555	COG0531	amino acid
C3Y97_04570	COG1012	belongs to the aldehyde dehydrogenase family
C3Y97_04590	COG1132	(ABC) transporter
C3Y97_04595	COG1132	(ABC) transporter
C3Y97_04605	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C3Y97_04610	COG0765	amino acid transport
C3Y97_04615	COG1126	abc transporter atp-binding protein
C3Y97_04630	COG0189	ligase activity
C3Y97_04660	COG0028	Belongs to the TPP enzyme family
C3Y97_04665	COG3527	Alpha-acetolactate decarboxylase
C3Y97_04675	COG0561	phosphatase activity
C3Y97_04685	COG5632	N-Acetylmuramoyl-L-alanine amidase
C3Y97_04685	COG3409	Peptidoglycan-binding domain 1 protein
C3Y97_04690	COG0635	Involved in the biosynthesis of porphyrin-containing compound
C3Y97_04700	COG0318	PFAM AMP-dependent synthetase and ligase
C3Y97_04715	COG0659	secondary active sulfate transmembrane transporter activity
C3Y97_04720	COG2244	polysaccharide biosynthetic process
C3Y97_04740	COG1024	Enoyl-CoA hydratase
C3Y97_04760	COG1363	Peptidase, m42
C3Y97_04800	COG0601	transmembrane transport
C3Y97_04805	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
C3Y97_04810	COG0444	Belongs to the ABC transporter superfamily
C3Y97_04815	COG4608	Belongs to the ABC transporter superfamily
C3Y97_04935	COG0477	Major facilitator Superfamily
C3Y97_04940	COG3290	protein histidine kinase activity
C3Y97_04945	COG4565	transcriptional regulatory protein
C3Y97_04950	COG3181	Tripartite tricarboxylate transporter family receptor
C3Y97_05000	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
C3Y97_05010	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
C3Y97_05040	COG0305	Participates in initiation and elongation during chromosome replication
C3Y97_05070	COG0477	Major facilitator Superfamily
C3Y97_05100	COG1073	alpha beta
C3Y97_05150	COG1183	phosphatidylcholine synthase activity
C3Y97_05165	COG2376	Dihydroxyacetone kinase
C3Y97_05180	COG2376	Dihydroxyacetone kinase
C3Y97_05225	COG2373	Large extracellular alpha-helical protein
C3Y97_05290	COG1191	sigma factor activity
C3Y97_05300	COG2208	phosphoserine phosphatase activity
C3Y97_05305	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
C3Y97_05310	COG5002	protein histidine kinase activity
C3Y97_05310	COG2205	protein histidine kinase activity
C3Y97_05310	COG0784	Response regulator, receiver
C3Y97_05335	COG0393	Putative heavy-metal-binding
C3Y97_05355	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
C3Y97_05375	COG0420	3'-5' exonuclease activity
C3Y97_05380	COG4717	serine-type aminopeptidase activity
C3Y97_05395	COG1280	lysine exporter protein (LysE YggA)
C3Y97_05400	COG0346	lactoylglutathione lyase activity
C3Y97_05405	COG0346	lactoylglutathione lyase activity
C3Y97_05410	COG0457	Tetratricopeptide repeat
C3Y97_05420	COG2267	carboxylic ester hydrolase activity
C3Y97_05440	COG2140	Oxalate decarboxylase
C3Y97_05445	COG3620	sequence-specific DNA binding
C3Y97_05450	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
C3Y97_05455	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
C3Y97_05465	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
C3Y97_05470	COG1695	Transcriptional regulator
C3Y97_05490	COG3973	AAA domain
C3Y97_05500	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
C3Y97_05525	COG4980	gas vesicle protein
C3Y97_05530	COG0537	adenosine 5'-monophosphoramidase activity
C3Y97_05540	COG1131	(ABC) transporter
C3Y97_05545	COG4473	ABC transporter
C3Y97_05570	COG3402	PFAM membrane-flanked domain
C3Y97_05575	COG3428	Bacterial PH domain
C3Y97_05610	COG0697	spore germination
C3Y97_05615	COG3402	PFAM membrane-flanked domain
C3Y97_05620	COG3428	Bacterial PH domain
C3Y97_05625	COG2329	Antibiotic biosynthesis monooxygenase
C3Y97_05630	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
C3Y97_05680	COG1309	transcriptional regulator
C3Y97_05685	COG1511	domain protein
C3Y97_05685	COG1511	domain protein
C3Y97_05715	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
C3Y97_05720	COG1609	Transcriptional regulator
C3Y97_05730	COG1234	tRNA 3'-trailer cleavage
C3Y97_05735	COG0095	Lipoate-protein ligase
C3Y97_05745	COG0318	PFAM AMP-dependent synthetase and ligase
C3Y97_05755	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
C3Y97_05765	COG4208	sulfate ABC transporter
C3Y97_05785	COG1408	metallophosphoesterase
C3Y97_05790	COG1078	dGTPase activity
C3Y97_05800	COG1595	DNA-templated transcription, initiation
C3Y97_05805	COG2207	Transcriptional regulator
C3Y97_05805	COG3708	Transcriptional regulator
C3Y97_05815	COG2205	protein histidine kinase activity
C3Y97_05820	COG0745	RESPONSE REGULATOR receiver
C3Y97_05840	COG0501	Belongs to the peptidase M48B family
C3Y97_05845	COG0840	transmembrane signaling receptor activity
C3Y97_05850	COG3693	PFAM glycoside hydrolase, family 10
C3Y97_05860	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
C3Y97_05865	COG2224	Isocitrate lyase
C3Y97_05880	COG1278	Cold shock
C3Y97_05900	COG0398	Pfam SNARE associated Golgi protein
C3Y97_05960	COG0179	Fumarylacetoacetate (FAA) hydrolase
C3Y97_05985	COG0367	asparagine synthase
C3Y97_05995	COG0753	catalase activity
C3Y97_06000	COG0004	ammonium transporteR
C3Y97_06025	COG2996	Protein conserved in bacteria
C3Y97_06040	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
C3Y97_06055	COG0561	phosphatase activity
C3Y97_06080	COG2267	carboxylic ester hydrolase activity
C3Y97_06100	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
C3Y97_06105	COG5504	Zn-dependent protease
C3Y97_06115	COG0180	Tryptophanyl-tRNA synthetase
C3Y97_06130	COG4166	transmembrane transport
C3Y97_06135	COG0601	transmembrane transport
C3Y97_06140	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
C3Y97_06145	COG0444	Belongs to the ABC transporter superfamily
C3Y97_06150	COG4608	Belongs to the ABC transporter superfamily
C3Y97_06155	COG0534	Mate efflux family protein
C3Y97_06160	COG4166	transmembrane transport
C3Y97_06175	COG1393	Belongs to the ArsC family
C3Y97_06180	COG0861	Integral membrane protein TerC family
C3Y97_06200	COG1164	Oligoendopeptidase f
C3Y97_06215	COG2346	COG2346, Truncated hemoglobins
C3Y97_06220	COG4116	CYTH
C3Y97_06230	COG2357	RelA SpoT domain protein
C3Y97_06240	COG0564	pseudouridine synthase activity
C3Y97_06255	COG0772	Belongs to the SEDS family
C3Y97_06260	COG1216	Glycosyl transferase, family 2
C3Y97_06285	COG0457	Tetratricopeptide repeat
C3Y97_06285	COG0463	Glycosyl transferase, family 2
C3Y97_06305	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
C3Y97_06320	COG1091	dTDP-4-dehydrorhamnose reductase activity
C3Y97_06365	COG2153	protein acetylation
C3Y97_06375	COG2382	esterase
C3Y97_06395	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
C3Y97_06410	COG0512	Glutamine amidotransferase of anthranilate synthase
C3Y97_06410	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
C3Y97_06445	COG1620	l-lactate permease
C3Y97_06450	COG5634	Uncharacterized conserved protein (DUF2278)
C3Y97_06505	COG0508	dehydrogenase complex catalyzes the overall conversion of
C3Y97_06565	COG1686	Belongs to the peptidase S11 family
C3Y97_06570	COG0681	Belongs to the peptidase S26 family
C3Y97_06605	COG1012	belongs to the aldehyde dehydrogenase family
C3Y97_06615	COG1176	ABC-type spermidine putrescine transport system, permease component I
C3Y97_06620	COG1177	transmembrane transport
C3Y97_06625	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
C3Y97_06635	COG2409	Drug exporters of the RND superfamily
C3Y97_06645	COG0564	pseudouridine synthase activity
C3Y97_06655	COG2340	Cysteine-rich secretory protein family
C3Y97_06660	COG0247	lactate metabolic process
C3Y97_06665	COG0277	FAD linked oxidase domain protein
C3Y97_06670	COG3835	regulator
C3Y97_06680	COG0745	RESPONSE REGULATOR receiver
C3Y97_06685	COG5002	protein histidine kinase activity
C3Y97_06690	COG2186	Transcriptional regulator
C3Y97_06710	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
C3Y97_06720	COG2116	formate transmembrane transporter activity
C3Y97_06725	COG0861	Integral membrane protein TerC family
C3Y97_06730	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
C3Y97_06740	COG2030	dehydratase
C3Y97_06760	COG1028	Short-chain dehydrogenase reductase Sdr
C3Y97_06765	COG3243	poly(R)-hydroxyalkanoic acid synthase
C3Y97_06775	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
C3Y97_06795	COG1840	ABC-type Fe3 transport system, periplasmic component
C3Y97_06800	COG3842	ATPase activity
C3Y97_06825	COG1349	DNA-binding transcription factor activity
C3Y97_06840	COG0235	Class ii aldolase
C3Y97_06850	COG2861	carbohydrate metabolic process
C3Y97_06860	COG3852	Histidine kinase
C3Y97_06865	COG1846	Transcriptional regulator
C3Y97_06875	COG2318	DinB family
C3Y97_06885	COG5002	protein histidine kinase activity
C3Y97_06895	COG0720	synthase
C3Y97_06910	COG4873	Protein conserved in bacteria
C3Y97_06945	COG1780	Probably involved in ribonucleotide reductase function
C3Y97_06950	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
C3Y97_06955	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
C3Y97_06960	COG1725	Transcriptional regulator
C3Y97_06965	COG1131	(ABC) transporter
C3Y97_06975	COG1131	(ABC) transporter
C3Y97_06995	COG1522	sequence-specific DNA binding
C3Y97_07005	COG1335	isochorismatase
C3Y97_07015	COG1619	proteins homologs of microcin C7 resistance protein MccF
C3Y97_07020	COG2070	2-Nitropropane dioxygenase
C3Y97_07025	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
C3Y97_07035	COG1696	Membrane protein involved in D-alanine export
C3Y97_07060	COG0716	FMN binding
C3Y97_07075	COG3173	Aminoglycoside phosphotransferase
C3Y97_07120	COG1846	Transcriptional regulator
C3Y97_07130	COG1301	dicarboxylic acid transport
C3Y97_07135	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
C3Y97_07140	COG4709	membrane
C3Y97_07145	COG3874	Sporulation protein YtfJ
C3Y97_07175	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
C3Y97_07180	COG0028	Belongs to the TPP enzyme family
C3Y97_07185	COG0440	acetolactate synthase activity
C3Y97_07260	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
C3Y97_07275	COG1183	phosphatidylcholine synthase activity
C3Y97_07280	COG1368	sulfuric ester hydrolase activity
C3Y97_07290	COG0019	diaminopimelate decarboxylase activity
C3Y97_07310	COG0529	Catalyzes the synthesis of activated sulfate
C3Y97_07315	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
C3Y97_07335	COG1648	precorrin-2 dehydrogenase activity
C3Y97_07345	COG0733	neurotransmitter:sodium symporter activity
C3Y97_07365	COG1757	Na H antiporter
C3Y97_07380	COG4758	membrane
C3Y97_07385	COG4585	Histidine kinase
C3Y97_07390	COG2197	response regulator
C3Y97_07400	COG1114	Component of the transport system for branched-chain amino acids
C3Y97_07455	COG0730	response to heat
C3Y97_07460	COG0306	phosphate transporter
C3Y97_07465	COG1392	Phosphate transport regulator
C3Y97_07470	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
C3Y97_07485	COG3852	Histidine kinase
C3Y97_07490	COG1801	Protein of unknown function DUF72
C3Y97_07500	COG0582	viral genome integration into host DNA
C3Y97_07505	COG5002	protein histidine kinase activity
C3Y97_07520	COG0392	lysyltransferase activity
C3Y97_07520	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
C3Y97_07535	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
C3Y97_07540	COG1686	Belongs to the peptidase S11 family
C3Y97_07545	COG2715	membrane protein required for spore maturation
C3Y97_07550	COG0700	Nucleoside recognition
C3Y97_07555	COG1187	pseudouridine synthase activity
C3Y97_07565	COG1333	cytochrome c biogenesis protein
C3Y97_07570	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
C3Y97_07575	COG0745	RESPONSE REGULATOR receiver
C3Y97_07580	COG5002	protein histidine kinase activity
C3Y97_07585	COG2096	Adenosyltransferase
C3Y97_07600	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
C3Y97_07605	COG1141	Ferredoxin
C3Y97_07615	COG0514	ATP-dependent DNA helicase (RecQ)
C3Y97_07620	COG1266	CAAX protease self-immunity
C3Y97_07630	COG1408	metallophosphoesterase
C3Y97_07635	COG0789	Transcriptional regulator
C3Y97_07645	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
C3Y97_07665	COG0492	ferredoxin-NADP+ reductase activity
C3Y97_07670	COG0252	asparaginase activity
C3Y97_07740	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
C3Y97_07755	COG0142	geranyltranstransferase activity
C3Y97_07765	COG0142	geranyltranstransferase activity
C3Y97_07790	COG0457	Tetratricopeptide repeat
C3Y97_07810	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
C3Y97_07815	COG2010	Cytochrome c
C3Y97_07815	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
C3Y97_07820	COG4347	Protein of unknown function (DUF1405)
C3Y97_07835	COG2738	Putative neutral zinc metallopeptidase
C3Y97_07845	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
C3Y97_07855	COG1694	Mazg nucleotide pyrophosphohydrolase
C3Y97_07875	COG0438	transferase activity, transferring glycosyl groups
C3Y97_07915	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
C3Y97_07915	COG1199	ATP-dependent helicase activity
C3Y97_07935	COG3935	DnaD domain protein
C3Y97_07940	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
C3Y97_07950	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
C3Y97_07950	COG4499	WXG100 protein secretion system (Wss), protein YukC
C3Y97_08010	COG0116	Belongs to the methyltransferase superfamily
C3Y97_08020	COG1199	ATP-dependent helicase activity
C3Y97_08025	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
C3Y97_08035	COG0024	Methionine aminopeptidase
C3Y97_08045	COG2233	PERMEase
C3Y97_08050	COG2311	Membrane
C3Y97_08060	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
C3Y97_08070	COG0456	acetyltransferase
C3Y97_08125	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
C3Y97_08140	COG3944	biosynthesis protein
C3Y97_08150	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
C3Y97_08165	COG1215	transferase activity, transferring glycosyl groups
C3Y97_08170	COG0438	transferase activity, transferring glycosyl groups
C3Y97_08185	COG0454	-acetyltransferase
C3Y97_08205	COG0328	RNA-DNA hybrid ribonuclease activity
C3Y97_08240	COG3403	YqcI/YcgG family
C3Y97_08245	COG1280	lysine exporter protein (LysE YggA)
C3Y97_08265	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
C3Y97_08270	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
C3Y97_08280	COG0475	glutathione-regulated potassium exporter activity
C3Y97_08285	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
C3Y97_08290	COG0789	Transcriptional regulator
C3Y97_08290	COG4978	Transcriptional regulator
C3Y97_08300	COG2323	membrane
C3Y97_08305	COG1434	Gram-negative-bacterium-type cell wall biogenesis
C3Y97_08340	COG1923	regulation of RNA biosynthetic process
C3Y97_08350	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
C3Y97_08355	COG1360	Flagellar Motor Protein
C3Y97_08360	COG2201	protein-glutamate methylesterase activity
C3Y97_08365	COG2198	Histidine kinase
C3Y97_08365	COG0643	Histidine kinase
C3Y97_08370	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
C3Y97_08370	COG1776	CheC inhibitor of MCP methylation
C3Y97_08385	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
C3Y97_08405	COG1256	bacterial-type flagellum assembly
C3Y97_08410	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
C3Y97_08430	COG1815	bacterial-type flagellum-dependent cell motility
C3Y97_08435	COG1558	bacterial-type flagellum-dependent cell motility
C3Y97_08440	COG1677	Flagellar hook-basal body complex protein FliE
C3Y97_08445	COG1766	The M ring may be actively involved in energy transduction
C3Y97_08450	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
C3Y97_08460	COG1157	protein secretion by the type III secretion system
C3Y97_08495	COG0784	Response regulator, receiver
C3Y97_08495	COG0835	chemotaxis
C3Y97_08510	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
C3Y97_08515	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
C3Y97_08520	COG0741	lytic transglycosylase activity
C3Y97_08530	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
C3Y97_08535	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
C3Y97_08535	COG1776	CheC inhibitor of MCP methylation
C3Y97_08545	COG1338	Plays a role in the flagellum-specific transport system
C3Y97_08550	COG1987	bacterial-type flagellum assembly
C3Y97_08560	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
C3Y97_08565	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
C3Y97_08570	COG1419	protein localization to endoplasmic reticulum
C3Y97_08575	COG4786	Flagellar basal body rod
C3Y97_08580	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
C3Y97_08615	COG2329	Antibiotic biosynthesis monooxygenase
C3Y97_08655	COG1177	transmembrane transport
C3Y97_08690	COG0406	alpha-ribazole phosphatase activity
C3Y97_08720	COG0367	asparagine synthase
C3Y97_08750	COG1802	Transcriptional regulator
C3Y97_08755	COG0697	spore germination
C3Y97_08765	COG0523	cobalamin synthesis protein
C3Y97_08770	COG0701	Predicted permease
C3Y97_08785	COG1757	Na H antiporter
C3Y97_08790	COG0789	Transcriptional regulator
C3Y97_08820	COG0534	Mate efflux family protein
C3Y97_08825	COG3340	Belongs to the peptidase S51 family
C3Y97_08845	COG0785	Cytochrome C biogenesis protein
C3Y97_08850	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
C3Y97_08860	COG0457	Tetratricopeptide repeat
C3Y97_08880	COG2733	membrane
C3Y97_08920	COG1131	(ABC) transporter
C3Y97_08935	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
C3Y97_08940	COG0528	UMP kinase activity
C3Y97_08950	COG1027	Aspartate ammonia-lyase
C3Y97_08955	COG0281	malic enzyme
C3Y97_08960	COG4191	Histidine kinase
C3Y97_08965	COG0784	Response regulator, receiver
C3Y97_08970	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
C3Y97_09030	COG2814	Major facilitator Superfamily
C3Y97_09050	COG1695	Transcriptional regulator
C3Y97_09065	COG0477	Major facilitator Superfamily
C3Y97_09080	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
C3Y97_09085	COG2223	nitrite transmembrane transporter activity
C3Y97_09090	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
C3Y97_09110	COG0733	neurotransmitter:sodium symporter activity
C3Y97_09120	COG5566	PFAM Mor transcription activator
C3Y97_09125	COG2323	membrane
C3Y97_09155	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
C3Y97_09165	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
C3Y97_09170	COG0028	Belongs to the TPP enzyme family
C3Y97_09190	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
C3Y97_09215	COG2814	Major facilitator Superfamily
C3Y97_09220	COG3384	dioxygenase
C3Y97_09230	COG3279	Response regulator of the LytR AlgR family
C3Y97_09235	COG0427	acetyl-CoA hydrolase
C3Y97_09255	COG4166	transmembrane transport
C3Y97_09260	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
C3Y97_09265	COG1914	H( )-stimulated, divalent metal cation uptake system
C3Y97_09280	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
C3Y97_09285	COG0531	amino acid
C3Y97_09310	COG2309	aminopeptidase activity
C3Y97_09325	COG0456	acetyltransferase
C3Y97_09345	COG1309	transcriptional regulator
C3Y97_09350	COG2390	Transcriptional regulator
C3Y97_09360	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
C3Y97_09365	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
C3Y97_09375	COG4846	Membrane protein involved in cytochrome C biogenesis
C3Y97_09395	COG0583	DNA-binding transcription factor activity
C3Y97_09410	COG0006	proline dipeptidase activity
C3Y97_09420	COG2132	Multicopper oxidase
C3Y97_09455	COG1114	Component of the transport system for branched-chain amino acids
C3Y97_09465	COG2372	response to copper ion
C3Y97_09465	COG1276	copper resistance
C3Y97_09470	COG4549	nuclear export factor GLE1
C3Y97_09475	COG0697	spore germination
C3Y97_09480	COG0583	DNA-binding transcription factor activity
C3Y97_09485	COG1959	2 iron, 2 sulfur cluster binding
C3Y97_09490	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
C3Y97_09495	COG0778	Nitroreductase
C3Y97_09510	COG0628	permease
C3Y97_09520	COG1231	oxidoreductase activity
C3Y97_09530	COG0523	cobalamin synthesis protein
C3Y97_09540	COG0411	ABC transporter
C3Y97_09550	COG0559	Belongs to the binding-protein-dependent transport system permease family
C3Y97_09560	COG0583	DNA-binding transcription factor activity
C3Y97_09570	COG1942	4-Oxalocrotonate Tautomerase
C3Y97_09590	COG1271	oxidase subunit
C3Y97_09595	COG1294	oxidase, subunit
C3Y97_09600	COG4988	ABC transporter
C3Y97_09605	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
C3Y97_09615	COG1216	Glycosyl transferase, family 2
C3Y97_09655	COG1686	Belongs to the peptidase S11 family
C3Y97_09670	COG0791	NLP P60 protein
C3Y97_09670	COG1388	LysM domain
C3Y97_09680	COG1132	(ABC) transporter
C3Y97_09685	COG0745	RESPONSE REGULATOR receiver
C3Y97_09690	COG5002	protein histidine kinase activity
C3Y97_09695	COG0300	oxidoreductase activity
C3Y97_09705	COG0726	polysaccharide deacetylase
C3Y97_09725	COG0460	homoserine dehydrogenase
C3Y97_09750	COG1316	TRANSCRIPTIONal
C3Y97_09760	COG0745	RESPONSE REGULATOR receiver
C3Y97_09765	COG5002	protein histidine kinase activity
C3Y97_09770	COG0726	polysaccharide deacetylase
C3Y97_09780	COG1285	pathogenesis
C3Y97_09795	COG1247	-acetyltransferase
C3Y97_09805	COG4264	IucA IucC family
C3Y97_09810	COG0318	PFAM AMP-dependent synthetase and ligase
C3Y97_09825	COG1082	Xylose isomerase domain protein TIM barrel
C3Y97_09835	COG2814	Major facilitator Superfamily
C3Y97_09840	COG1279	arginine transmembrane transporter activity
C3Y97_09845	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
C3Y97_09855	COG1752	Esterase of the alpha-beta hydrolase superfamily
C3Y97_09890	COG0577	efflux transmembrane transporter activity
C3Y97_09895	COG2002	toxin-antitoxin pair type II binding
C3Y97_09900	COG1404	Belongs to the peptidase S8 family
C3Y97_09905	COG0640	Transcriptional regulator
C3Y97_09910	COG0667	Aldo Keto reductase
C3Y97_09915	COG2814	Major facilitator Superfamily
C3Y97_09925	COG3152	Membrane
C3Y97_09950	COG0840	transmembrane signaling receptor activity
C3Y97_09970	COG3949	Membrane
C3Y97_09975	COG0783	Belongs to the Dps family
C3Y97_09990	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
C3Y97_10000	COG1231	oxidoreductase activity
C3Y97_10005	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
C3Y97_10010	COG4989	oxidoreductase activity
C3Y97_10015	COG0523	cobalamin synthesis protein
C3Y97_10020	COG0456	acetyltransferase
C3Y97_10025	COG0803	Belongs to the bacterial solute-binding protein 9 family
C3Y97_10030	COG0702	epimerase
C3Y97_10040	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
C3Y97_10050	COG4166	transmembrane transport
C3Y97_10075	COG5337	Spore coat protein CotH
C3Y97_10080	COG1051	belongs to the nudix hydrolase family
C3Y97_10085	COG0586	Pfam SNARE associated Golgi protein
C3Y97_10100	COG2244	polysaccharide biosynthetic process
C3Y97_10110	COG0701	Predicted permease
C3Y97_10115	COG3689	TIGRFAM TIGR03943 family protein
C3Y97_10120	COG1607	acyl-coa hydrolase
C3Y97_10130	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
C3Y97_10145	COG0702	epimerase
C3Y97_10150	COG2839	Protein conserved in bacteria
C3Y97_10155	COG1253	flavin adenine dinucleotide binding
C3Y97_10170	COG1114	Component of the transport system for branched-chain amino acids
C3Y97_10175	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
C3Y97_10195	COG0860	N-Acetylmuramoyl-L-alanine amidase
C3Y97_10205	COG1876	peptidase activity
C3Y97_10215	COG0154	amidase activity
C3Y97_10220	COG2211	Major facilitator Superfamily
C3Y97_10235	COG0860	N-Acetylmuramoyl-L-alanine amidase
C3Y97_10245	COG0561	phosphatase activity
C3Y97_10260	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
C3Y97_10280	COG1819	glycosyl
C3Y97_10285	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
C3Y97_10290	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
C3Y97_10340	COG0842	Transport permease protein
C3Y97_10340	COG1511	domain protein
C3Y97_10355	COG4499	WXG100 protein secretion system (Wss), protein YukC
C3Y97_10415	COG3874	Sporulation protein YtfJ
C3Y97_10440	COG2226	methyltransferase
C3Y97_10460	COG1082	Xylose isomerase domain protein TIM barrel
C3Y97_10465	COG0346	lactoylglutathione lyase activity
C3Y97_10475	COG0604	alcohol dehydrogenase
C3Y97_10480	COG1595	DNA-templated transcription, initiation
C3Y97_10490	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
C3Y97_10500	COG0426	domain, Protein
C3Y97_10500	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
C3Y97_10510	COG0386	Belongs to the glutathione peroxidase family
C3Y97_10515	COG1305	Transglutaminase-like
C3Y97_10520	COG1721	protein (some members contain a von Willebrand factor type A (vWA) domain
C3Y97_10525	COG0714	Associated with various cellular activities
C3Y97_10530	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
C3Y97_10535	COG1140	nitrate reductase beta subunit
C3Y97_10540	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
C3Y97_10545	COG2181	nitrate reductase activity
C3Y97_10550	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
C3Y97_10555	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
C3Y97_10560	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
C3Y97_10565	COG0303	'Molybdopterin
C3Y97_10570	COG0314	molybdopterin synthase activity
C3Y97_10580	COG2223	nitrite transmembrane transporter activity
C3Y97_10605	COG1648	precorrin-2 dehydrogenase activity
C3Y97_10615	COG1587	Uroporphyrinogen-III synthase
C3Y97_10615	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
C3Y97_10620	COG2146	nitrite reductase [NAD(P)H] activity
C3Y97_10625	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
C3Y97_10630	COG2846	Di-iron-containing protein involved in the repair of iron-sulfur clusters
C3Y97_10665	COG2359	stage V sporulation protein S
C3Y97_10690	COG0457	Tetratricopeptide repeat
C3Y97_10705	COG1418	mRNA catabolic process
C3Y97_10710	COG0488	(ABC) transporter
C3Y97_10770	COG1413	lyase activity
C3Y97_10785	COG2521	methyltransferase
C3Y97_10785	COG2136	Putative SAM-dependent methyltransferase
C3Y97_10790	COG0018	arginyl-trna synthetase
C3Y97_10845	COG0017	Asparaginyl-tRNA synthetase
C3Y97_10850	COG0733	neurotransmitter:sodium symporter activity
C3Y97_10875	COG2610	gluconate transmembrane transporter activity
C3Y97_10885	COG1794	racemase activity, acting on amino acids and derivatives
C3Y97_10895	COG0456	acetyltransferase
C3Y97_10905	COG3655	Transcriptional regulator
C3Y97_10910	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
C3Y97_10920	COG1131	(ABC) transporter
C3Y97_10935	COG0546	phosphoglycolate phosphatase activity
C3Y97_10950	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
C3Y97_10965	COG0768	penicillin binding
C3Y97_10975	COG0204	Acyl-transferase
C3Y97_10980	COG1272	protein, Hemolysin III
C3Y97_10990	COG0805	protein transport
C3Y97_11000	COG1307	EDD domain protein, DegV family
C3Y97_11010	COG1999	signal sequence binding
C3Y97_11015	COG0071	Belongs to the small heat shock protein (HSP20) family
C3Y97_11020	COG0367	asparagine synthase
C3Y97_11035	COG0860	N-Acetylmuramoyl-L-alanine amidase
C3Y97_11040	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
C3Y97_11045	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
C3Y97_11065	COG1335	isochorismatase
C3Y97_11080	COG0668	transmembrane transport
C3Y97_11085	COG4585	Histidine kinase
C3Y97_11085	COG2203	Gaf domain
C3Y97_11090	COG2197	response regulator
C3Y97_11095	COG1737	Transcriptional regulator
C3Y97_11100	COG0384	phenazine biosynthesis protein PhzF
C3Y97_11105	COG1064	alcohol dehydrogenase
C3Y97_11130	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
C3Y97_11165	COG0517	IMP dehydrogenase activity
C3Y97_11165	COG1125	glycine betaine transport
C3Y97_11170	COG1174	glycine betaine transport
C3Y97_11205	COG1253	flavin adenine dinucleotide binding
C3Y97_11210	COG1012	belongs to the aldehyde dehydrogenase family
C3Y97_11215	COG5506	Protein of unknown function (DUF1694)
C3Y97_11230	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
C3Y97_11235	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
C3Y97_11240	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
C3Y97_11245	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
C3Y97_11250	COG0456	acetyltransferase
C3Y97_11255	COG3829	transcription factor binding
C3Y97_11260	COG1509	lysine 2,3-aminomutase activity
C3Y97_11295	COG0515	serine threonine protein kinase
C3Y97_11295	COG4991	sh3 domain protein
C3Y97_11295	COG3064	Membrane
C3Y97_11305	COG0671	phosphoesterase, PA-phosphatase related
C3Y97_11310	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
C3Y97_11315	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
C3Y97_11410	COG0300	oxidoreductase activity
C3Y97_11430	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
C3Y97_11430	COG4499	WXG100 protein secretion system (Wss), protein YukC
C3Y97_11440	COG2814	Major facilitator Superfamily
C3Y97_11445	COG4841	protein insertion into membrane
C3Y97_11450	COG0372	Belongs to the citrate synthase family
C3Y97_11455	COG2079	MmgE PrpD family protein
C3Y97_11460	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
C3Y97_11465	COG1960	acyl-CoA dehydrogenase activity
C3Y97_11470	COG2084	Dehydrogenase
C3Y97_11480	COG1280	lysine exporter protein (LysE YggA)
C3Y97_11485	COG1024	Enoyl-CoA hydratase
C3Y97_11500	COG0420	3'-5' exonuclease activity
C3Y97_11505	COG0419	ATPase involved in DNA repair
C3Y97_11535	COG2223	nitrite transmembrane transporter activity
C3Y97_11545	COG1028	Short-chain dehydrogenase reductase Sdr
C3Y97_11550	COG1169	isochorismate synthase
C3Y97_11555	COG1021	2,3-dihydroxybenzoate-AMP ligase
C3Y97_11560	COG3433	isochorismatase activity
C3Y97_11560	COG1535	isochorismatase
C3Y97_11565	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
C3Y97_11570	COG3251	PFAM MbtH domain protein
C3Y97_11575	COG2814	Major facilitator Superfamily
C3Y97_11590	COG0776	regulation of translation
C3Y97_11600	COG2318	DinB family
C3Y97_11610	COG1115	amino acid carrier protein
C3Y97_11630	COG1187	pseudouridine synthase activity
C3Y97_11635	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
C3Y97_11640	COG1136	(ABC) transporter
C3Y97_11655	COG0028	Belongs to the TPP enzyme family
C3Y97_11695	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
C3Y97_11720	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
C3Y97_11770	COG1247	-acetyltransferase
C3Y97_11805	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
C3Y97_11835	COG0583	DNA-binding transcription factor activity
C3Y97_11840	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
C3Y97_11860	COG0583	DNA-binding transcription factor activity
C3Y97_11865	COG2258	MOSC domain
C3Y97_11880	COG1132	(ABC) transporter
C3Y97_11885	COG1132	(ABC) transporter
C3Y97_11920	COG1396	sequence-specific DNA binding
C3Y97_11950	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
C3Y97_11955	COG1595	DNA-templated transcription, initiation
C3Y97_11985	COG1649	PFAM Uncharacterised BCR, COG1649
C3Y97_12010	COG2971	BadF BadG BcrA BcrD
C3Y97_12020	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
C3Y97_12030	COG1846	Transcriptional regulator
C3Y97_12055	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
C3Y97_12075	COG1309	transcriptional regulator
C3Y97_12210	COG3615	Tellurite resistance protein tehB
C3Y97_12210	COG0500	methyltransferase
C3Y97_12220	COG2226	methyltransferase
C3Y97_12225	COG3961	Belongs to the TPP enzyme family
C3Y97_12230	COG1846	Transcriptional regulator
C3Y97_12265	COG2195	Cleaves the N-terminal amino acid of tripeptides
C3Y97_12290	COG2002	toxin-antitoxin pair type II binding
C3Y97_12305	COG0730	response to heat
C3Y97_12310	COG0110	maltose O-acetyltransferase activity
C3Y97_12315	COG1686	Belongs to the peptidase S11 family
C3Y97_12330	COG2814	Major facilitator Superfamily
C3Y97_12365	COG2312	Erythromycin esterase
C3Y97_12370	COG0741	lytic transglycosylase activity
C3Y97_12375	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
C3Y97_12435	COG0577	efflux transmembrane transporter activity
C3Y97_12440	COG1136	(ABC) transporter
C3Y97_12480	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
C3Y97_12485	COG0768	penicillin binding
C3Y97_12490	COG1595	DNA-templated transcription, initiation
C3Y97_12500	COG0768	penicillin binding
C3Y97_12515	COG1408	metallophosphoesterase
C3Y97_12525	COG1131	(ABC) transporter
C3Y97_12535	COG1309	transcriptional regulator
C3Y97_12550	COG1960	acyl-CoA dehydrogenase activity
C3Y97_12555	COG0439	Biotin carboxylase
C3Y97_12560	COG0511	ligase activity, forming carbon-carbon bonds
C3Y97_12565	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
C3Y97_12570	COG1024	Enoyl-CoA hydratase
C3Y97_12575	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
C3Y97_12580	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
C3Y97_12605	COG0572	uridine kinase
C3Y97_12630	COG1686	Belongs to the peptidase S11 family
C3Y97_12665	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
C3Y97_12680	COG3227	Zinc metalloprotease (Elastase)
C3Y97_12685	COG2207	Transcriptional regulator
C3Y97_12710	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
C3Y97_12720	COG2814	Major facilitator Superfamily
C3Y97_12725	COG1028	Short-chain dehydrogenase reductase Sdr
C3Y97_12730	COG1733	regulation of RNA biosynthetic process
C3Y97_12735	COG2226	methyltransferase
C3Y97_12775	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
C3Y97_12785	COG2368	4-hydroxyphenylacetate
C3Y97_12800	COG1063	alcohol dehydrogenase
C3Y97_12810	COG2323	membrane
C3Y97_12815	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
C3Y97_12825	COG3386	PFAM SMP-30 Gluconolaconase
C3Y97_12835	COG1384	Belongs to the class-I aminoacyl-tRNA synthetase family
C3Y97_12840	COG3773	Cell wall hydrolase
C3Y97_12845	COG0596	Alpha beta hydrolase
C3Y97_12855	COG0745	RESPONSE REGULATOR receiver
C3Y97_12860	COG2205	protein histidine kinase activity
C3Y97_12885	COG0825	malonyl-CoA metabolic process
C3Y97_12895	COG1136	(ABC) transporter
C3Y97_12900	COG0577	efflux transmembrane transporter activity
C3Y97_12920	COG0460	homoserine dehydrogenase
C3Y97_12925	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
C3Y97_12935	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
C3Y97_12995	COG2124	cytochrome p450
C3Y97_13035	COG0561	phosphatase activity
C3Y97_13040	COG5002	protein histidine kinase activity
C3Y97_13055	COG1819	glycosyl
C3Y97_13060	COG1794	racemase activity, acting on amino acids and derivatives
C3Y97_13085	COG2205	protein histidine kinase activity
C3Y97_13175	COG0604	alcohol dehydrogenase
C3Y97_13180	COG0671	phosphoesterase, PA-phosphatase related
C3Y97_13235	COG2814	Major facilitator Superfamily
C3Y97_13240	COG0789	Transcriptional regulator
C3Y97_13240	COG4978	Transcriptional regulator
C3Y97_13265	COG0584	glycerophosphoryl diester phosphodiesterase
C3Y97_13285	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
C3Y97_13290	COG0697	spore germination
C3Y97_13335	COG2223	nitrite transmembrane transporter activity
C3Y97_13355	COG0592	DNA-directed DNA polymerase activity
C3Y97_13375	COG0251	oxidation-reduction process
C3Y97_13380	COG3878	Protein conserved in bacteria
C3Y97_13405	COG4667	esterase of the alpha-beta hydrolase superfamily
C3Y97_13445	COG0322	excinuclease ABC activity
C3Y97_13475	COG1131	(ABC) transporter
C3Y97_13495	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
C3Y97_13535	COG0745	RESPONSE REGULATOR receiver
C3Y97_13540	COG5002	protein histidine kinase activity
C3Y97_13555	COG1136	(ABC) transporter
C3Y97_13560	COG0577	efflux transmembrane transporter activity
C3Y97_13565	COG1073	alpha beta
C3Y97_13575	COG0076	glutamate decarboxylase activity
C3Y97_13590	COG1523	belongs to the glycosyl hydrolase 13 family
C3Y97_13595	COG3227	Zinc metalloprotease (Elastase)
C3Y97_13600	COG0737	Belongs to the 5'-nucleotidase family
C3Y97_13625	COG0201	protein transport
C3Y97_13630	COG0697	spore germination
C3Y97_13635	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
C3Y97_13645	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
C3Y97_13675	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
C3Y97_13690	COG2959	enzyme of heme biosynthesis
C3Y97_13695	COG3773	Cell wall hydrolase
C3Y97_13695	COG3409	Peptidoglycan-binding domain 1 protein
C3Y97_13730	COG1309	transcriptional regulator
C3Y97_13755	COG3284	Transcriptional regulator
C3Y97_13775	COG1349	DNA-binding transcription factor activity
C3Y97_13790	COG1959	2 iron, 2 sulfur cluster binding
C3Y97_13805	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
C3Y97_13810	COG0508	dehydrogenase complex catalyzes the overall conversion of
C3Y97_13815	COG0022	dehydrogenase e1 component
C3Y97_13820	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
C3Y97_13830	COG1028	Short-chain dehydrogenase reductase Sdr
C3Y97_13860	COG4176	ABC-type proline glycine betaine transport system permease component
C3Y97_13865	COG4175	Glycine betaine
C3Y97_13865	COG0517	IMP dehydrogenase activity
C3Y97_13875	COG0740	serine-type endopeptidase activity
C3Y97_13895	COG2153	protein acetylation
C3Y97_13900	COG3397	chitin binding
C3Y97_13905	COG1819	glycosyl
C3Y97_13925	COG2205	protein histidine kinase activity
C3Y97_13930	COG2226	methyltransferase
C3Y97_13935	COG2315	Protein conserved in bacteria
C3Y97_13980	COG0456	acetyltransferase
C3Y97_13985	COG3973	AAA domain
C3Y97_14000	COG0514	ATP-dependent DNA helicase (RecQ)
C3Y97_14035	COG4637	Psort location Cytoplasmic, score
C3Y97_14055	COG3397	chitin binding
C3Y97_14070	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
C3Y97_14075	COG1115	amino acid carrier protein
C3Y97_14080	COG1012	belongs to the aldehyde dehydrogenase family
C3Y97_14085	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
C3Y97_14095	COG3938	Belongs to the proline racemase family
C3Y97_14100	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
C3Y97_14145	COG1078	dGTPase activity
C3Y97_14150	COG0586	Pfam SNARE associated Golgi protein
C3Y97_14160	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
C3Y97_14170	COG4166	transmembrane transport
C3Y97_14180	COG4948	Mandelate Racemase Muconate Lactonizing
C3Y97_14195	COG0667	Aldo Keto reductase
C3Y97_14240	COG3850	Histidine kinase
C3Y97_14240	COG5002	protein histidine kinase activity
C3Y97_14245	COG0745	RESPONSE REGULATOR receiver
C3Y97_14280	COG1164	Oligoendopeptidase f
C3Y97_14285	COG1307	EDD domain protein, DegV family
C3Y97_14330	COG2814	Major facilitator Superfamily
C3Y97_14340	COG1664	Polymer-forming cytoskeletal
C3Y97_14345	COG0789	Transcriptional regulator
C3Y97_14350	COG4533	DNA binding
C3Y97_14355	COG2814	Major facilitator Superfamily
C3Y97_14355	COG0477	Major facilitator Superfamily
C3Y97_14375	COG2261	transglycosylase associated protein
C3Y97_14390	COG2226	methyltransferase
C3Y97_14430	COG0436	Aminotransferase
C3Y97_14435	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
C3Y97_14460	COG1131	(ABC) transporter
C3Y97_14515	COG0628	permease
C3Y97_14530	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
C3Y97_14535	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
C3Y97_14540	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
C3Y97_14580	COG2746	aminoglycoside 3-N-acetyltransferase activity
C3Y97_14590	COG0697	spore germination
C3Y97_14600	COG2318	DinB family
C3Y97_14620	COG4912	Dna alkylation repair
C3Y97_14625	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
C3Y97_14630	COG0346	lactoylglutathione lyase activity
C3Y97_14635	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
C3Y97_14640	COG0726	polysaccharide deacetylase
C3Y97_14650	COG0861	Integral membrane protein TerC family
C3Y97_14655	COG1368	sulfuric ester hydrolase activity
C3Y97_14660	COG0488	(ABC) transporter
C3Y97_14665	COG1033	growth of symbiont in host cell
C3Y97_14665	COG2409	Drug exporters of the RND superfamily
C3Y97_14670	COG1309	transcriptional regulator
C3Y97_14685	COG0287	Prephenate dehydrogenase
C3Y97_14705	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
C3Y97_14705	COG1605	Chorismate mutase
C3Y97_14755	COG1388	LysM domain
C3Y97_14755	COG3584	3D domain protein
C3Y97_14765	COG0346	lactoylglutathione lyase activity
C3Y97_14795	COG1879	ABC-type sugar transport system periplasmic component
C3Y97_14800	COG1172	Belongs to the binding-protein-dependent transport system permease family
C3Y97_14805	COG1172	Belongs to the binding-protein-dependent transport system permease family
C3Y97_14815	COG2390	Transcriptional regulator
C3Y97_14820	COG1070	Carbohydrate kinase
C3Y97_14840	COG2329	Antibiotic biosynthesis monooxygenase
C3Y97_14860	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
C3Y97_14880	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
C3Y97_14885	COG4187	Peptidase family M20/M25/M40
C3Y97_14890	COG1414	Transcriptional regulator
C3Y97_14900	COG0833	amino acid
C3Y97_14915	COG3239	Fatty acid desaturase
C3Y97_14925	COG2720	vancomycin resistance protein
C3Y97_14930	COG1785	Belongs to the alkaline phosphatase family
C3Y97_14940	COG3655	Transcriptional regulator
C3Y97_14960	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
C3Y97_14965	COG0346	lactoylglutathione lyase activity
C3Y97_14990	COG0714	Associated with various cellular activities
C3Y97_15015	COG0463	Glycosyl transferase, family 2
C3Y97_15045	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
C3Y97_15050	COG0753	catalase activity
C3Y97_15095	COG0714	Associated with various cellular activities
C3Y97_15165	COG0778	Nitroreductase
C3Y97_15170	COG1846	Transcriptional regulator
C3Y97_15220	COG0456	acetyltransferase
C3Y97_15235	COG0697	spore germination
C3Y97_15240	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
C3Y97_15265	COG0642	Histidine kinase
C3Y97_15270	COG0745	RESPONSE REGULATOR receiver
C3Y97_15275	COG0596	Alpha beta hydrolase
C3Y97_15310	COG0730	response to heat
C3Y97_15320	COG0833	amino acid
C3Y97_15330	COG4335	DNA alkylation repair
C3Y97_15340	COG5002	protein histidine kinase activity
C3Y97_15345	COG0745	RESPONSE REGULATOR receiver
C3Y97_15355	COG0577	efflux transmembrane transporter activity
C3Y97_15355	COG1136	(ABC) transporter
C3Y97_15420	COG1984	allophanate hydrolase subunit 2
C3Y97_15425	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
C3Y97_15430	COG1414	Transcriptional regulator
C3Y97_15445	COG0640	Transcriptional regulator
C3Y97_15455	COG1960	acyl-CoA dehydrogenase activity
C3Y97_15490	COG1633	Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME)
C3Y97_15515	COG3848	Pyruvate phosphate dikinase
C3Y97_15515	COG0574	Belongs to the PEP-utilizing enzyme family
C3Y97_15520	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
C3Y97_15530	COG5577	PFAM Coat F domain
C3Y97_15540	COG3403	YqcI/YcgG family
C3Y97_15545	COG1280	lysine exporter protein (LysE YggA)
C3Y97_15550	COG1113	amino acid transport
C3Y97_15580	COG1063	alcohol dehydrogenase
C3Y97_15590	COG1027	Aspartate ammonia-lyase
C3Y97_15595	COG0252	asparaginase activity
C3Y97_15600	COG1396	sequence-specific DNA binding
C3Y97_15635	COG5002	protein histidine kinase activity
C3Y97_15660	COG2207	Transcriptional regulator
C3Y97_15680	COG0322	excinuclease ABC activity
C3Y97_15685	COG0531	amino acid
C3Y97_15690	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
C3Y97_15700	COG0531	amino acid
C3Y97_15705	COG0697	spore germination
C3Y97_15715	COG0784	Response regulator, receiver
C3Y97_15720	COG4191	Histidine kinase
C3Y97_15730	COG1115	amino acid carrier protein
C3Y97_15740	COG2124	cytochrome p450
C3Y97_15755	COG0737	Belongs to the 5'-nucleotidase family
C3Y97_15760	COG2267	carboxylic ester hydrolase activity
C3Y97_15765	COG1335	isochorismatase
C3Y97_15785	COG0583	DNA-binding transcription factor activity
C3Y97_15790	COG1846	Transcriptional regulator
C3Y97_15795	COG0598	Magnesium transport protein CorA
C3Y97_15815	COG1073	alpha beta
C3Y97_15835	COG0415	Belongs to the DNA photolyase family
C3Y97_15850	COG0288	reversible hydration of carbon dioxide
C3Y97_15860	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
C3Y97_15865	COG5609	conserved protein (DUF2294)
C3Y97_15880	COG0697	spore germination
C3Y97_15885	COG0726	polysaccharide deacetylase
C3Y97_15895	COG1575	Belongs to the MenA family. Type 1 subfamily
C3Y97_15905	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
C3Y97_15915	COG0798	PFAM Bile acid sodium symporter
C3Y97_15920	COG0346	lactoylglutathione lyase activity
C3Y97_15925	COG0640	Transcriptional regulator
C3Y97_15940	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
C3Y97_15945	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
C3Y97_15945	COG3320	Male sterility
C3Y97_15965	COG2814	Major facilitator Superfamily
C3Y97_15970	COG1309	transcriptional regulator
C3Y97_15975	COG2068	MobA-Related Protein
C3Y97_15980	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
C3Y97_15995	COG1529	Aldehyde oxidase and xanthine dehydrogenase
C3Y97_16025	COG1028	Short-chain dehydrogenase reductase Sdr
C3Y97_16030	COG1522	sequence-specific DNA binding
C3Y97_16045	COG0346	lactoylglutathione lyase activity
C3Y97_16105	COG0814	amino acid
C3Y97_16110	COG0583	DNA-binding transcription factor activity
C3Y97_16115	COG0697	spore germination
C3Y97_16170	COG0745	RESPONSE REGULATOR receiver
C3Y97_16175	COG3850	Histidine kinase
C3Y97_16175	COG5002	protein histidine kinase activity
C3Y97_16230	COG2814	Major facilitator Superfamily
C3Y97_16255	COG2515	1-aminocyclopropane-1-carboxylate deaminase
C3Y97_16265	COG1690	Belongs to the RtcB family
C3Y97_16275	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
C3Y97_16290	COG0577	efflux transmembrane transporter activity
C3Y97_16310	COG3850	Histidine kinase
C3Y97_16310	COG5002	protein histidine kinase activity
C3Y97_16320	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
C3Y97_16330	COG1619	proteins homologs of microcin C7 resistance protein MccF
C3Y97_16375	COG0814	amino acid
C3Y97_16385	COG1760	l-serine dehydratase
C3Y97_16400	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
C3Y97_16405	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
C3Y97_16415	COG1335	isochorismatase
C3Y97_16420	COG1522	sequence-specific DNA binding
C3Y97_16425	COG0531	amino acid
C3Y97_16445	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
C3Y97_16465	COG0662	Cupin 2, conserved barrel domain protein
C3Y97_16475	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
C3Y97_16475	COG2207	Transcriptional regulator
C3Y97_16500	COG5632	N-Acetylmuramoyl-L-alanine amidase
C3Y97_16500	COG3409	Peptidoglycan-binding domain 1 protein
C3Y97_16595	COG5444	nuclease activity
C3Y97_16620	COG1876	peptidase activity
C3Y97_16625	COG2843	Capsule synthesis protein
C3Y97_16635	COG0477	Major facilitator Superfamily
C3Y97_16650	COG1846	Transcriptional regulator
C3Y97_16655	COG2814	Major facilitator Superfamily
C3Y97_16665	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
C3Y97_16670	COG1131	(ABC) transporter
C3Y97_16690	COG2031	fatty acid transporter
C3Y97_16700	COG2249	NAD(P)H dehydrogenase (quinone) activity
C3Y97_16755	COG1288	antiporter activity
C3Y97_16760	COG2356	endonuclease I
C3Y97_16785	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
C3Y97_16805	COG1733	regulation of RNA biosynthetic process
C3Y97_16810	COG0778	Nitroreductase
C3Y97_16845	COG1028	Short-chain dehydrogenase reductase Sdr
C3Y97_16855	COG1131	(ABC) transporter
C3Y97_16885	COG1011	Hydrolase
C3Y97_16920	COG0180	Tryptophanyl-tRNA synthetase
C3Y97_16930	COG0628	permease
C3Y97_16955	COG0500	methyltransferase
C3Y97_16965	COG0477	Major facilitator Superfamily
C3Y97_16995	COG1253	flavin adenine dinucleotide binding
C3Y97_17000	COG0789	Transcriptional regulator
C3Y97_17010	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
C3Y97_17040	COG0697	spore germination
C3Y97_17050	COG1357	PFAM Pentapeptide repeats (8 copies)
C3Y97_17055	COG3813	Protein conserved in bacteria
C3Y97_17060	COG2706	6-phosphogluconolactonase activity
C3Y97_17065	COG1070	Carbohydrate kinase
C3Y97_17080	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
C3Y97_17085	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
C3Y97_17090	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
C3Y97_17105	COG0604	alcohol dehydrogenase
C3Y97_17110	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
C3Y97_17130	COG1028	Short-chain dehydrogenase reductase Sdr
C3Y97_17145	COG0840	transmembrane signaling receptor activity
C3Y97_17155	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
C3Y97_17155	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
C3Y97_17160	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
C3Y97_17160	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
C3Y97_17165	COG1733	regulation of RNA biosynthetic process
C3Y97_17185	COG0656	L-ascorbic acid biosynthetic process
C3Y97_17190	COG2814	Major facilitator Superfamily
C3Y97_17205	COG3759	membrane
C3Y97_17220	COG2824	Alkylphosphonate utilization operon protein PhnA
C3Y97_17225	COG0659	secondary active sulfate transmembrane transporter activity
C3Y97_17240	COG0814	amino acid
C3Y97_17275	COG1733	regulation of RNA biosynthetic process
C3Y97_17280	COG2188	Transcriptional regulator
C3Y97_17285	COG0673	inositol 2-dehydrogenase activity
C3Y97_17290	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
C3Y97_17295	COG1733	regulation of RNA biosynthetic process
C3Y97_17300	COG1733	regulation of RNA biosynthetic process
C3Y97_17325	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
C3Y97_17345	COG0384	phenazine biosynthesis protein PhzF
C3Y97_17350	COG0318	PFAM AMP-dependent synthetase and ligase
C3Y97_17355	COG2249	NAD(P)H dehydrogenase (quinone) activity
C3Y97_17360	COG1733	regulation of RNA biosynthetic process
C3Y97_17385	COG0726	polysaccharide deacetylase
C3Y97_17395	COG1191	sigma factor activity
C3Y97_17405	COG1280	lysine exporter protein (LysE YggA)
C3Y97_17465	COG1151	hydroxylamine reductase activity
C3Y97_17480	COG3409	Peptidoglycan-binding domain 1 protein
C3Y97_17480	COG3757	hydrolase, family 25
C3Y97_17510	COG2072	flavoprotein involved in K transport
C3Y97_17550	COG1113	amino acid transport
C3Y97_17555	COG2814	Major facilitator Superfamily
C3Y97_17590	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
C3Y97_17595	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
C3Y97_17610	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
C3Y97_17615	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
C3Y97_17620	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
C3Y97_17625	COG3739	integral membrane protein
C3Y97_17645	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
C3Y97_17660	COG0583	DNA-binding transcription factor activity
C3Y97_17690	COG2162	N-hydroxyarylamine O-acetyltransferase activity
C3Y97_17695	COG1164	Oligoendopeptidase f
C3Y97_17730	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
C3Y97_17755	COG0584	glycerophosphoryl diester phosphodiesterase
C3Y97_17765	COG0640	Transcriptional regulator
C3Y97_17770	COG0604	alcohol dehydrogenase
C3Y97_17780	COG0457	Tetratricopeptide repeat
C3Y97_17810	COG0277	FAD linked oxidase domain protein
C3Y97_17835	COG1183	phosphatidylcholine synthase activity
C3Y97_17850	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
C3Y97_17850	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
C3Y97_17855	COG1252	NADH dehydrogenase
C3Y97_17865	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
C3Y97_17875	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
C3Y97_17885	COG0457	Tetratricopeptide repeat
C3Y97_18075	COG0739	heme binding
C3Y97_18175	COG1404	Belongs to the peptidase S8 family
C3Y97_18220	COG5002	protein histidine kinase activity
C3Y97_18225	COG5002	protein histidine kinase activity
C3Y97_18235	COG1388	LysM domain
C3Y97_18235	COG3584	3D domain protein
C3Y97_18285	COG1388	LysM domain
C3Y97_18285	COG5632	N-Acetylmuramoyl-L-alanine amidase
C3Y97_18285	COG3409	Peptidoglycan-binding domain 1 protein
C3Y97_18305	COG1393	Belongs to the ArsC family
C3Y97_18350	COG3300	MHYT domain
C3Y97_18350	COG5001	Diguanylate cyclase
C3Y97_18380	COG3852	Histidine kinase
C3Y97_18390	COG1285	pathogenesis
C3Y97_18400	COG2514	catechol 2,3-dioxygenase activity
C3Y97_18405	COG2720	vancomycin resistance protein
C3Y97_18435	COG1278	Cold shock
C3Y97_18445	COG0716	FMN binding
C3Y97_18475	COG1028	Short-chain dehydrogenase reductase Sdr
C3Y97_18485	COG0165	Argininosuccinate lyase
C3Y97_18500	COG4145	pantothenate transmembrane transporter activity
C3Y97_18510	COG1012	belongs to the aldehyde dehydrogenase family
C3Y97_18515	COG1028	Short-chain dehydrogenase reductase Sdr
C3Y97_18525	COG1657	PFAM Prenyltransferase squalene oxidase
C3Y97_18530	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
C3Y97_18535	COG2962	Rard protein
C3Y97_18540	COG3326	Membrane
C3Y97_18555	COG0489	protein tyrosine kinase activity
C3Y97_18565	COG0314	molybdopterin synthase activity
C3Y97_18570	COG0303	'Molybdopterin
C3Y97_18575	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
C3Y97_18580	COG2116	formate transmembrane transporter activity
C3Y97_18595	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
C3Y97_18600	COG5609	conserved protein (DUF2294)
C3Y97_18605	COG2427	Protein of unknown function (DUF1641)
C3Y97_18610	COG3383	formate dehydrogenase (NAD+) activity
C3Y97_18615	COG0697	spore germination
C3Y97_18630	COG0531	amino acid
C3Y97_18665	COG2226	methyltransferase
C3Y97_18670	COG4166	transmembrane transport
C3Y97_18675	COG4166	transmembrane transport
C3Y97_18680	COG4166	transmembrane transport
C3Y97_18685	COG1316	TRANSCRIPTIONal
C3Y97_18695	COG1595	DNA-templated transcription, initiation
C3Y97_18705	COG1131	(ABC) transporter
C3Y97_18725	COG0673	inositol 2-dehydrogenase activity
C3Y97_18730	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
C3Y97_18735	COG0187	DNA topoisomerase II activity
C3Y97_18745	COG1832	CoA-binding protein
C3Y97_18750	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
C3Y97_18755	COG0745	RESPONSE REGULATOR receiver
C3Y97_18780	COG0824	Thioesterase
C3Y97_18810	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
C3Y97_18825	COG1132	(ABC) transporter
C3Y97_18830	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
C3Y97_18840	COG0726	polysaccharide deacetylase
C3Y97_18860	COG2211	Major facilitator Superfamily
C3Y97_18870	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
C3Y97_18885	COG0183	Belongs to the thiolase family
C3Y97_18895	COG1268	BioY protein
C3Y97_18900	COG0318	PFAM AMP-dependent synthetase and ligase
C3Y97_18945	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
C3Y97_18960	COG5002	protein histidine kinase activity
C3Y97_18965	COG0400	carboxylic ester hydrolase activity
C3Y97_18970	COG0346	lactoylglutathione lyase activity
C3Y97_18975	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
C3Y97_18980	COG0069	glutamate synthase activity
C3Y97_18985	COG1902	pentaerythritol trinitrate reductase activity
C3Y97_18990	COG1329	Transcriptional regulator
C3Y97_18995	COG0010	Belongs to the arginase family
C3Y97_19055	COG4846	Membrane protein involved in cytochrome C biogenesis
C3Y97_19060	COG0785	Cytochrome C biogenesis protein
C3Y97_19085	COG1131	(ABC) transporter
C3Y97_19100	COG0583	DNA-binding transcription factor activity
C3Y97_19110	COG1346	cytolysis
C3Y97_19125	COG0730	response to heat
C3Y97_19150	COG1132	(ABC) transporter
C3Y97_19155	COG1132	(ABC) transporter
C3Y97_19180	COG3639	organic phosphonate transmembrane transporter activity
C3Y97_19190	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C3Y97_19195	COG0737	Belongs to the 5'-nucleotidase family
C3Y97_19205	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
C3Y97_19225	COG1695	Transcriptional regulator
C3Y97_19230	COG0174	glutamine synthetase
C3Y97_19235	COG0789	Transcriptional regulator
C3Y97_19240	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
C3Y97_19245	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
C3Y97_19250	COG2860	membrane
C3Y97_19255	COG0464	growth
C3Y97_19285	COG3584	3D domain protein
C3Y97_19285	COG1388	LysM domain
C3Y97_19295	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
C3Y97_19295	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
C3Y97_19295	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
C3Y97_19300	COG1105	Belongs to the carbohydrate kinase PfkB family
C3Y97_19305	COG1349	DNA-binding transcription factor activity
C3Y97_19310	COG1979	alcohol dehydrogenase
C3Y97_19315	COG2322	membrane
C3Y97_19330	COG1113	amino acid transport
C3Y97_19345	COG1408	metallophosphoesterase
C3Y97_19350	COG2116	formate transmembrane transporter activity
C3Y97_19365	COG2217	Heavy metal translocating P-type atpase
C3Y97_19370	COG2608	mercury ion transmembrane transporter activity
C3Y97_19375	COG1937	Protein conserved in bacteria
C3Y97_19385	COG2819	hydrolase of the alpha beta superfamily
C3Y97_19390	COG1120	ATPase activity
C3Y97_19395	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
C3Y97_19400	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
C3Y97_19405	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
C3Y97_19415	COG0708	Exodeoxyribonuclease III
C3Y97_19420	COG2169	Transcriptional regulator
C3Y97_19425	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
C3Y97_19430	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
C3Y97_19450	COG2267	carboxylic ester hydrolase activity
C3Y97_19455	COG5001	Diguanylate cyclase
C3Y97_19455	COG3300	MHYT domain
C3Y97_19475	COG1086	Polysaccharide biosynthesis protein
C3Y97_19495	COG1346	cytolysis
C3Y97_19505	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
C3Y97_19515	COG2188	Transcriptional regulator
C3Y97_19520	COG2723	6-phospho-beta-galactosidase activity
C3Y97_19530	COG1404	Belongs to the peptidase S8 family
C3Y97_19535	COG3773	Cell wall hydrolase
C3Y97_19550	COG1368	sulfuric ester hydrolase activity
C3Y97_19555	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
C3Y97_19580	COG4550	Control of competence regulator ComK, YlbF/YmcA
C3Y97_19590	COG1013	pyruvate-flavodoxin oxidoreductase activity
C3Y97_19595	COG0674	pyruvate-flavodoxin oxidoreductase activity
C3Y97_19595	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
C3Y97_19605	COG2359	stage V sporulation protein S
C3Y97_19610	COG1692	metallophosphoesterase
C3Y97_19630	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
C3Y97_19635	COG1426	Protein conserved in bacteria
C3Y97_19650	COG0300	oxidoreductase activity
C3Y97_19655	COG0612	Peptidase, M16
C3Y97_19660	COG0612	Peptidase, M16
C3Y97_19685	COG2188	Transcriptional regulator
C3Y97_19705	COG0740	serine-type endopeptidase activity
C3Y97_19710	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
C3Y97_19720	COG0527	aspartate kinase activity
C3Y97_19725	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
C3Y97_19730	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
C3Y97_19735	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
C3Y97_19740	COG1873	PFAM PRC-barrel domain
C3Y97_19745	COG0612	Peptidase, M16
C3Y97_19750	COG0726	polysaccharide deacetylase
C3Y97_19765	COG0196	riboflavin kinase activity
C3Y97_19780	COG1550	Protein conserved in bacteria
C3Y97_19790	COG1358	cellular component organization or biogenesis
C3Y97_19795	COG2740	Nucleic-acid-binding protein implicated in transcription termination
C3Y97_19800	COG0195	Participates in both transcription termination and antitermination
C3Y97_19825	COG0750	zinc metalloprotease
C3Y97_19835	COG4589	Belongs to the CDS family
C3Y97_19880	COG4974	Belongs to the 'phage' integrase family
C3Y97_19890	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
C3Y97_19895	COG0758	DNA mediated transformation
C3Y97_19900	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
C3Y97_19940	COG1837	Belongs to the UPF0109 family
C3Y97_19950	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
C3Y97_19960	COG0552	protein localization to endoplasmic reticulum
C3Y97_19965	COG1196	nuclear chromosome segregation
C3Y97_19980	COG1028	Short-chain dehydrogenase reductase Sdr
C3Y97_19985	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
C3Y97_20000	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
C3Y97_20005	COG1461	Dihydroxyacetone kinase
C3Y97_20010	COG1302	Protein conserved in bacteria
C3Y97_20025	COG1564	THIamine pyrophosphokinase
C3Y97_20030	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
C3Y97_20040	COG2815	serine threonine protein kinase
C3Y97_20040	COG0515	serine threonine protein kinase
C3Y97_20045	COG0631	protein serine/threonine phosphatase activity
C3Y97_20055	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
C3Y97_20055	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
C3Y97_20070	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
C3Y97_20075	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
C3Y97_20095	COG1561	YicC-like family, N-terminal region
C3Y97_20100	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
C3Y97_20110	COG0006	proline dipeptidase activity
C3Y97_20125	COG3069	C4-dicarboxylate transmembrane transporter activity
C3Y97_20185	COG0564	pseudouridine synthase activity
C3Y97_20205	COG3599	regulation of cell shape
C3Y97_20210	COG2302	S4 RNA-binding domain
C3Y97_20215	COG0762	integral membrane protein
C3Y97_20225	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
C3Y97_20235	COG1873	PFAM PRC-barrel domain
C3Y97_20240	COG1191	sigma factor activity
C3Y97_20245	COG1191	sigma factor activity
C3Y97_20255	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
C3Y97_20260	COG0849	cell division
C3Y97_20280	COG0772	Belongs to the SEDS family
C3Y97_20300	COG0768	penicillin binding
C3Y97_20325	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
C3Y97_20345	COG1399	metal-binding, possibly nucleic acid-binding protein
C3Y97_20355	COG3480	Lon protease (S16) C-terminal proteolytic domain
C3Y97_20360	COG1752	Esterase of the alpha-beta hydrolase superfamily
C3Y97_20365	COG3314	Sporulation integral membrane protein YlbJ
C3Y97_20375	COG0742	ribosomal rna small subunit methyltransferase
C3Y97_20390	COG3679	Belongs to the UPF0342 family
C3Y97_20395	COG0406	alpha-ribazole phosphatase activity
C3Y97_20410	COG2340	Cysteine-rich secretory protein family
C3Y97_20425	COG3336	cytochrome c oxidase
C3Y97_20460	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
C3Y97_20470	COG0772	Belongs to the SEDS family
C3Y97_20480	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
C3Y97_20485	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
C3Y97_20495	COG4896	Protein conserved in bacteria
C3Y97_20520	COG0483	inositol monophosphate 1-phosphatase activity
C3Y97_20540	COG1982	Orn Lys Arg decarboxylase major
C3Y97_20590	COG0022	dehydrogenase e1 component
C3Y97_20595	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
C3Y97_20610	COG0561	phosphatase activity
C3Y97_20625	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
C3Y97_20630	COG0569	domain protein
C3Y97_20650	COG0583	DNA-binding transcription factor activity
C3Y97_20655	COG0517	IMP dehydrogenase activity
C3Y97_20665	COG1978	Selenoprotein B, glycine betaine sarcosine D-proline reductase family
C3Y97_20675	COG4703	Protein of unknown function (DUF1797)
C3Y97_20690	COG2200	EAL domain
C3Y97_20695	COG1028	Short-chain dehydrogenase reductase Sdr
C3Y97_20700	COG1408	metallophosphoesterase
C3Y97_20745	COG2814	Major facilitator Superfamily
C3Y97_20765	COG3209	COG3209 Rhs family protein
C3Y97_20780	COG2205	protein histidine kinase activity
C3Y97_20790	COG0436	Aminotransferase
C3Y97_20795	COG1609	Transcriptional regulator
C3Y97_20800	COG3833	ABC-type maltose transport systems, permease component
C3Y97_20805	COG1175	transmembrane transport
C3Y97_20810	COG2182	Extracellular solute-binding protein
C3Y97_20820	COG0366	Alpha amylase catalytic
C3Y97_20825	COG3842	ATPase activity
C3Y97_20865	COG0183	Belongs to the thiolase family
C3Y97_20900	COG1695	Transcriptional regulator
C3Y97_20905	COG1028	Short-chain dehydrogenase reductase Sdr
C3Y97_20925	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
C3Y97_20930	COG0436	Aminotransferase
C3Y97_20965	COG2084	Dehydrogenase
C3Y97_20975	COG2203	Gaf domain
C3Y97_20975	COG2199	diguanylate cyclase activity
C3Y97_20980	COG0778	Nitroreductase
C3Y97_21005	COG2190	(PTS) system
C3Y97_21005	COG1263	PTS System
C3Y97_21005	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
C3Y97_21010	COG3711	transcriptional antiterminator
C3Y97_21030	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
C3Y97_21060	COG1547	Domain of unknown function (DUF309)
C3Y97_21065	COG0456	acetyltransferase
C3Y97_21070	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
C3Y97_21075	COG4086	secreted protein
C3Y97_21080	COG0561	phosphatase activity
C3Y97_21085	COG0697	spore germination
C3Y97_21100	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
C3Y97_21125	COG0733	neurotransmitter:sodium symporter activity
C3Y97_21145	COG1686	Belongs to the peptidase S11 family
C3Y97_21155	COG1725	Transcriptional regulator
C3Y97_21160	COG1131	(ABC) transporter
C3Y97_21180	COG1846	Transcriptional regulator
C3Y97_21195	COG0598	Magnesium transport protein CorA
C3Y97_21220	COG4974	Belongs to the 'phage' integrase family
C3Y97_21230	COG0735	belongs to the Fur family
C3Y97_21235	COG1300	Membrane
C3Y97_21255	COG0667	Aldo Keto reductase
C3Y97_21260	COG0656	L-ascorbic acid biosynthetic process
C3Y97_21265	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
C3Y97_21265	COG0456	acetyltransferase
C3Y97_21275	COG4085	toxin activity
C3Y97_21275	COG1525	nuclease
C3Y97_21275	COG0737	Belongs to the 5'-nucleotidase family
C3Y97_21285	COG0596	Alpha beta hydrolase
C3Y97_21290	COG2056	Na+-H+ antiporter family
C3Y97_21295	COG1609	Transcriptional regulator
C3Y97_21300	COG0456	acetyltransferase
C3Y97_21305	COG1073	alpha beta
C3Y97_21320	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
C3Y97_21320	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
C3Y97_21325	COG0307	riboflavin synthase, alpha
C3Y97_21355	COG1073	alpha beta
C3Y97_21355	COG2226	methyltransferase
C3Y97_21370	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
C3Y97_21390	COG0737	Belongs to the 5'-nucleotidase family
C3Y97_21400	COG1522	sequence-specific DNA binding
C3Y97_21445	COG0300	oxidoreductase activity
C3Y97_21450	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
C3Y97_21455	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
C3Y97_21460	COG1760	l-serine dehydratase
C3Y97_21465	COG1760	l-serine dehydratase
C3Y97_21495	COG1285	pathogenesis
C3Y97_21505	COG2195	Cleaves the N-terminal amino acid of tripeptides
C3Y97_21510	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
C3Y97_21525	COG1376	ErfK ybiS ycfS ynhG family protein
C3Y97_21530	COG4129	membrane
C3Y97_21535	COG1126	abc transporter atp-binding protein
C3Y97_21540	COG0765	amino acid transport
C3Y97_21545	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
C3Y97_21565	COG2323	membrane
C3Y97_21570	COG0772	Belongs to the SEDS family
C3Y97_21580	COG0508	dehydrogenase complex catalyzes the overall conversion of
C3Y97_21585	COG0022	dehydrogenase e1 component
C3Y97_21590	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
C3Y97_21595	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
C3Y97_21605	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
C3Y97_21610	COG0280	phosphate acetyltransferase
C3Y97_21620	COG3290	protein histidine kinase activity
C3Y97_21620	COG3829	transcription factor binding
C3Y97_21630	COG0584	glycerophosphoryl diester phosphodiesterase
C3Y97_21635	COG3093	addiction module antidote protein HigA
C3Y97_21655	COG0750	zinc metalloprotease
C3Y97_21660	COG0497	DNA recombination
C3Y97_21670	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
C3Y97_21680	COG0142	geranyltranstransferase activity
C3Y97_21705	COG1302	Protein conserved in bacteria
C3Y97_21710	COG0439	Biotin carboxylase
C3Y97_21715	COG0511	ligase activity, forming carbon-carbon bonds
C3Y97_21760	COG3854	ATPases associated with a variety of cellular activities
C3Y97_21785	COG0006	proline dipeptidase activity
C3Y97_21800	COG3872	metal-dependent enzyme
C3Y97_21810	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
C3Y97_21845	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
C3Y97_21855	COG1609	Transcriptional regulator
C3Y97_21865	COG2076	Multidrug Resistance protein
C3Y97_21870	COG2076	Multidrug Resistance protein
C3Y97_21905	COG1131	(ABC) transporter
C3Y97_21910	COG1725	Transcriptional regulator
C3Y97_21945	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
C3Y97_22015	COG1459	type II secretion system
C3Y97_22020	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
C3Y97_22075	COG1410	methionine synthase
C3Y97_22075	COG0646	methionine synthase
C3Y97_22080	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
C3Y97_22080	COG0646	methionine synthase
C3Y97_22085	COG0626	cystathionine gamma-synthase activity
C3Y97_22090	COG0626	cystathionine gamma-synthase activity
C3Y97_22110	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
C3Y97_22120	COG1940	carbohydrate kinase activity
C3Y97_22125	COG4483	Protein conserved in bacteria
C3Y97_22130	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
C3Y97_22140	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
C3Y97_22145	COG0704	Plays a role in the regulation of phosphate uptake
C3Y97_22155	COG0573	inorganic phosphate transmembrane transporter activity
C3Y97_22160	COG0573	inorganic phosphate transmembrane transporter activity
C3Y97_22165	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
C3Y97_22175	COG0477	Major facilitator Superfamily
C3Y97_22180	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
C3Y97_22190	COG5521	maltodextrose utilization protein MalA
C3Y97_22205	COG0735	belongs to the Fur family
C3Y97_22210	COG1108	ABC-type Mn2 Zn2 transport systems permease components
C3Y97_22215	COG1121	(ABC) transporter
C3Y97_22220	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
C3Y97_22250	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
C3Y97_22255	COG2384	SAM-dependent methyltransferase
C3Y97_22265	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
C3Y97_22270	COG0358	DNA primase activity
C3Y97_22290	COG0517	IMP dehydrogenase activity
C3Y97_22305	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
C3Y97_22310	COG0295	cytidine deaminase activity
C3Y97_22315	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
C3Y97_22325	COG1480	7TM receptor with intracellular HD hydrolase
C3Y97_22330	COG1702	phosphate starvation-inducible protein PhoH
C3Y97_22350	COG1610	YqeY-like protein
C3Y97_22365	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
C3Y97_22370	COG1385	rRNA (uridine-N3-)-methyltransferase activity
C3Y97_22400	COG0635	Involved in the biosynthesis of porphyrin-containing compound
C3Y97_22405	COG1733	regulation of RNA biosynthetic process
C3Y97_22430	COG1466	dna polymerase III delta subunit
C3Y97_22440	COG2333	competence protein COMEC
C3Y97_22440	COG0658	competence protein
C3Y97_22445	COG2131	deaminase
C3Y97_22450	COG1596	polysaccharide export
C3Y97_22450	COG1555	photosystem II stabilization
C3Y97_22455	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
C3Y97_22460	COG2226	methyltransferase
C3Y97_22465	COG0799	negative regulation of ribosome biogenesis
C3Y97_22470	COG1713	HD superfamily hydrolase involved in NAD metabolism
C3Y97_22480	COG1534	Rna-binding protein
C3Y97_22490	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
C3Y97_22495	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
C3Y97_22510	COG1191	sigma factor activity
C3Y97_22530	COG0778	Nitroreductase
C3Y97_22535	COG2357	RelA SpoT domain protein
C3Y97_22545	COG1785	Belongs to the alkaline phosphatase family
C3Y97_22555	COG2267	carboxylic ester hydrolase activity
C3Y97_22590	COG1404	Belongs to the peptidase S8 family
C3Y97_22595	COG3186	Phenylalanine-4-hydroxylase
C3Y97_22605	COG2514	catechol 2,3-dioxygenase activity
C3Y97_22610	COG2259	Doxx family
C3Y97_22655	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
C3Y97_22670	COG1012	belongs to the aldehyde dehydrogenase family
C3Y97_22670	COG1454	alcohol dehydrogenase
C3Y97_22675	COG0626	cystathionine gamma-synthase activity
C3Y97_22680	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
C3Y97_22705	COG0768	penicillin binding
C3Y97_22740	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
C3Y97_22770	COG0628	permease
C3Y97_22790	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
C3Y97_22805	COG1104	cysteine desulfurase activity
C3Y97_22810	COG1959	2 iron, 2 sulfur cluster binding
C3Y97_22815	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
C3Y97_22830	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
C3Y97_22855	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
C3Y97_22865	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
C3Y97_22865	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
C3Y97_22870	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
C3Y97_22875	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
C3Y97_22875	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
C3Y97_22885	COG2244	polysaccharide biosynthetic process
C3Y97_22890	COG2323	membrane
C3Y97_22900	COG1862	Preprotein translocase
C3Y97_22930	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
C3Y97_22960	COG0157	Belongs to the NadC ModD family
C3Y97_22965	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
C3Y97_22970	COG1104	cysteine desulfurase activity
C3Y97_22975	COG1827	regulation of RNA biosynthetic process
C3Y97_22980	COG2258	MOSC domain
C3Y97_22985	COG0077	Prephenate dehydratase
C3Y97_22990	COG0577	efflux transmembrane transporter activity
C3Y97_22995	COG0577	efflux transmembrane transporter activity
C3Y97_23000	COG1136	(ABC) transporter
C3Y97_23005	COG5002	protein histidine kinase activity
C3Y97_23010	COG0745	RESPONSE REGULATOR receiver
C3Y97_23020	COG3290	protein histidine kinase activity
C3Y97_23030	COG2868	ribosomal protein
C3Y97_23040	COG1530	ribonuclease E activity
C3Y97_23045	COG1994	Peptidase M50
C3Y97_23050	COG0739	heme binding
C3Y97_23055	COG2894	cell division
C3Y97_23070	COG1792	Involved in formation and maintenance of cell shape
C3Y97_23075	COG1077	Cell shape determining protein MreB Mrl
C3Y97_23095	COG0285	dihydrofolate synthase activity
C3Y97_23110	COG1388	LysM domain
C3Y97_23120	COG0113	porphobilinogen synthase activity
C3Y97_23125	COG1587	Uroporphyrinogen-III synthase
C3Y97_23135	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
C3Y97_23145	COG1846	Transcriptional regulator
C3Y97_23150	COG1764	response to oxidative stress
C3Y97_23165	COG0470	DNA polymerase III
C3Y97_23165	COG1067	ATP-dependent peptidase activity
C3Y97_23245	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
C3Y97_23295	COG0622	Phosphoesterase
C3Y97_23310	COG5401	PFAM Sporulation and spore germination
C3Y97_23330	COG1309	transcriptional regulator
C3Y97_23340	COG2197	response regulator
C3Y97_23345	COG2233	PERMEase
C3Y97_23350	COG0402	S-adenosylhomocysteine deaminase activity
C3Y97_23355	COG1983	PspC domain protein
C3Y97_23360	COG1396	sequence-specific DNA binding
C3Y97_23365	COG0697	spore germination
C3Y97_23375	COG1959	2 iron, 2 sulfur cluster binding
C3Y97_23380	COG1668	transmembrane transport
C3Y97_23385	COG4152	abc transporter atp-binding protein
C3Y97_23390	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
C3Y97_23395	COG1360	Flagellar Motor Protein
C3Y97_23400	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
C3Y97_23410	COG1876	peptidase activity
C3Y97_23415	COG0824	Thioesterase
C3Y97_23420	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
C3Y97_23425	COG1053	succinate dehydrogenase
C3Y97_23430	COG2009	succinate dehydrogenase
C3Y97_23435	COG1719	4-vinyl reductase, 4VR
C3Y97_23445	COG3118	belongs to the thioredoxin family
C3Y97_23450	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
C3Y97_23455	COG2086	electron transfer activity
C3Y97_23460	COG1024	Enoyl-CoA hydratase
C3Y97_23465	COG1309	transcriptional regulator
C3Y97_23470	COG0318	PFAM AMP-dependent synthetase and ligase
C3Y97_23495	COG2318	DinB family
C3Y97_23525	COG1131	(ABC) transporter
C3Y97_23530	COG2205	protein histidine kinase activity
C3Y97_23535	COG0745	RESPONSE REGULATOR receiver
C3Y97_23545	COG4895	conserved protein (DUF2196)
C3Y97_23550	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
C3Y97_23565	COG4509	Sortase family
C3Y97_23570	COG1120	ATPase activity
C3Y97_23585	COG5386	Cell surface protein
C3Y97_23595	COG5386	Cell surface protein
C3Y97_23600	COG1114	Component of the transport system for branched-chain amino acids
C3Y97_23605	COG1187	pseudouridine synthase activity
C3Y97_23620	COG1796	DNA polymerase
C3Y97_23620	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
C3Y97_23625	COG1286	toxin biosynthetic process
C3Y97_23670	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
C3Y97_23680	COG1418	mRNA catabolic process
C3Y97_23700	COG2814	Major facilitator Superfamily
C3Y97_23705	COG1566	PFAM secretion protein HlyD family protein
C3Y97_23710	COG1309	transcriptional regulator
C3Y97_23715	COG1363	Peptidase, m42
C3Y97_23740	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
C3Y97_23755	COG1484	DNA-dependent DNA replication
C3Y97_23760	COG3611	Membrane attachment protein
C3Y97_23770	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
C3Y97_23780	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
C3Y97_23790	COG1971	Probably functions as a manganese efflux pump
C3Y97_23800	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
C3Y97_23800	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
C3Y97_23805	COG5002	protein histidine kinase activity
C3Y97_23810	COG0745	RESPONSE REGULATOR receiver
C3Y97_23835	COG0538	isocitrate dehydrogenase activity
C3Y97_23840	COG0372	Belongs to the citrate synthase family
C3Y97_23855	COG0628	permease
C3Y97_23860	COG3030	protein affecting phage T7 exclusion by the F plasmid
C3Y97_23885	COG1725	Transcriptional regulator
C3Y97_23890	COG0281	malic enzyme
C3Y97_23895	COG0587	DNA-directed DNA polymerase activity
C3Y97_23910	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
C3Y97_23925	COG4109	DRTGG domain
C3Y97_23940	COG0006	proline dipeptidase activity
C3Y97_23980	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
C3Y97_23985	COG0662	Cupin 2, conserved barrel domain protein
C3Y97_24000	COG1028	Short-chain dehydrogenase reductase Sdr
C3Y97_24005	COG0589	response to stress
C3Y97_24055	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
C3Y97_24080	COG0827	DNA restriction-modification system
C3Y97_24085	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
C3Y97_24090	COG3874	Sporulation protein YtfJ
C3Y97_24105	COG1574	metal-dependent hydrolase with the TIM-barrel fold
C3Y97_24115	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
C3Y97_24130	COG1104	cysteine desulfurase activity
C3Y97_24140	COG0583	DNA-binding transcription factor activity
C3Y97_24145	COG0697	spore germination
C3Y97_24150	COG1309	transcriptional regulator
C3Y97_24155	COG1956	GAF domain-containing protein
C3Y97_24160	COG0626	cystathionine gamma-synthase activity
C3Y97_24195	COG1595	DNA-templated transcription, initiation
C3Y97_24205	COG0110	maltose O-acetyltransferase activity
C3Y97_24210	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
C3Y97_24215	COG0454	-acetyltransferase
C3Y97_24220	COG0517	IMP dehydrogenase activity
C3Y97_24225	COG0123	including yeast histone deacetylase and acetoin utilization protein
C3Y97_24240	COG0745	RESPONSE REGULATOR receiver
C3Y97_24250	COG0666	response to abiotic stimulus
C3Y97_24285	COG1609	Transcriptional regulator
C3Y97_24295	COG1605	Chorismate mutase
C3Y97_24295	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
C3Y97_24300	COG4851	CamS sex pheromone cAM373 precursor
C3Y97_24305	COG3118	belongs to the thioredoxin family
C3Y97_24315	COG2309	aminopeptidase activity
C3Y97_24340	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
C3Y97_24355	COG1674	ftsk spoiiie
C3Y97_24360	COG0860	N-Acetylmuramoyl-L-alanine amidase
C3Y97_24360	COG1388	LysM domain
C3Y97_24370	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
C3Y97_24380	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
C3Y97_24385	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
C3Y97_24390	COG1363	Peptidase, m42
C3Y97_24400	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
C3Y97_24415	COG0510	thiamine kinase activity
C3Y97_24420	COG1523	belongs to the glycosyl hydrolase 13 family
C3Y97_24430	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
C3Y97_24435	COG1349	DNA-binding transcription factor activity
C3Y97_24440	COG1187	pseudouridine synthase activity
C3Y97_24445	COG2244	polysaccharide biosynthetic process
C3Y97_24450	COG2081	HI0933 family
C3Y97_24455	COG2814	Major facilitator Superfamily
C3Y97_24465	COG3832	glyoxalase III activity
C3Y97_24490	COG1329	Transcriptional regulator
C3Y97_24515	COG0314	molybdopterin synthase activity
C3Y97_24520	COG1763	Mo-molybdopterin cofactor biosynthetic process
C3Y97_24525	COG0303	'Molybdopterin
C3Y97_24535	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
C3Y97_24540	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
C3Y97_24565	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
C3Y97_24575	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
C3Y97_24615	COG2814	Major facilitator Superfamily
C3Y97_24625	COG0490	domain, Protein
C3Y97_24630	COG0582	viral genome integration into host DNA
C3Y97_24640	COG1136	(ABC) transporter
C3Y97_24660	COG1242	4 iron, 4 sulfur cluster binding
C3Y97_24665	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
C3Y97_24670	COG1794	racemase activity, acting on amino acids and derivatives
C3Y97_24695	COG2267	carboxylic ester hydrolase activity
C3Y97_24700	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
C3Y97_24705	COG0671	phosphoesterase, PA-phosphatase related
C3Y97_24710	COG0438	transferase activity, transferring glycosyl groups
C3Y97_24730	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
C3Y97_24790	COG5002	protein histidine kinase activity
C3Y97_24795	COG3852	Histidine kinase
C3Y97_24810	COG2267	carboxylic ester hydrolase activity
C3Y97_24815	COG1368	sulfuric ester hydrolase activity
C3Y97_24830	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
C3Y97_24835	COG1116	anion transmembrane transporter activity
C3Y97_24840	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
C3Y97_24865	COG0494	nUDIX hydrolase
C3Y97_24905	COG0288	reversible hydration of carbon dioxide
C3Y97_24910	COG1271	oxidase subunit
C3Y97_24915	COG1294	oxidase, subunit
C3Y97_24930	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
C3Y97_24955	COG1842	Phage shock protein A
C3Y97_24985	COG5002	protein histidine kinase activity
C3Y97_24990	COG0745	RESPONSE REGULATOR receiver
C3Y97_25020	COG1597	lipid kinase activity
C3Y97_25040	COG0577	efflux transmembrane transporter activity
C3Y97_25045	COG1136	(ABC) transporter
C3Y97_25060	COG0586	Pfam SNARE associated Golgi protein
C3Y97_25065	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
C3Y97_25070	COG0577	efflux transmembrane transporter activity
C3Y97_25075	COG1136	(ABC) transporter
C3Y97_25080	COG2207	Transcriptional regulator
C3Y97_25080	COG3708	Transcriptional regulator
C3Y97_25090	COG5658	integral membrane protein
C3Y97_25095	COG0640	Transcriptional regulator
C3Y97_25100	COG0745	RESPONSE REGULATOR receiver
C3Y97_25105	COG2205	protein histidine kinase activity
C3Y97_25110	COG0577	efflux transmembrane transporter activity
C3Y97_25115	COG0577	efflux transmembrane transporter activity
C3Y97_25120	COG1136	(ABC) transporter
C3Y97_25125	COG0577	efflux transmembrane transporter activity
C3Y97_25170	COG3964	amidohydrolase
C3Y97_25205	COG4948	Mandelate Racemase Muconate Lactonizing
C3Y97_25215	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
C3Y97_25220	COG0596	Alpha beta hydrolase
C3Y97_25230	COG1169	isochorismate synthase
C3Y97_25235	COG1575	Belongs to the MenA family. Type 1 subfamily
C3Y97_25240	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
C3Y97_25245	COG1278	Cold shock
C3Y97_25275	COG0058	SHG alpha-glucan phosphorylase activity
C3Y97_25285	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
C3Y97_25305	COG1404	Belongs to the peptidase S8 family
C3Y97_25410	COG0544	peptidyl-prolyl cis-trans isomerase activity
C3Y97_25450	COG1285	pathogenesis
C3Y97_25455	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
C3Y97_25475	COG2155	Conserved Protein
C3Y97_25480	COG1098	S1 RNA binding domain
C3Y97_25485	COG0436	Aminotransferase
C3Y97_25490	COG1522	sequence-specific DNA binding
C3Y97_25495	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
C3Y97_25500	COG2267	carboxylic ester hydrolase activity
C3Y97_25510	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
C3Y97_25525	COG5018	Exonuclease
C3Y97_25530	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
C3Y97_25550	COG0423	glycine-tRNA ligase activity
C3Y97_25555	COG2050	protein possibly involved in aromatic compounds catabolism
C3Y97_25565	COG1268	BioY protein
C3Y97_25570	COG1210	Utp--glucose-1-phosphate uridylyltransferase
C3Y97_25575	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
C3Y97_25595	COG2076	Multidrug Resistance protein
C3Y97_25600	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
C3Y97_25620	COG2076	Multidrug Resistance protein
C3Y97_25625	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
C3Y97_25630	COG3584	3D domain protein
C3Y97_25645	COG1252	NADH dehydrogenase
C3Y97_25660	COG3708	Transcriptional regulator
C3Y97_25675	COG1683	Conserved Protein
C3Y97_25695	COG0316	Belongs to the HesB IscA family
C3Y97_25710	COG1252	NADH dehydrogenase
C3Y97_25720	COG2274	protein secretion by the type I secretion system
C3Y97_25725	COG0390	transport system, permease component
C3Y97_25730	COG2824	Alkylphosphonate utilization operon protein PhnA
C3Y97_25755	COG4837	Protein of unknown function (DUF1462)
C3Y97_25760	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
C3Y97_25770	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
C3Y97_25775	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
C3Y97_25795	COG1358	cellular component organization or biogenesis
C3Y97_25805	COG2249	NAD(P)H dehydrogenase (quinone) activity
C3Y97_25810	COG0647	UMP catabolic process
C3Y97_25820	COG2445	Protein of unknown function DUF86
C3Y97_25825	COG1494	fructose-1,6-bisphosphatase
C3Y97_25845	COG4470	Protein conserved in bacteria
C3Y97_25855	COG0789	Transcriptional regulator
C3Y97_25860	COG4377	Putative membrane peptidase family (DUF2324)
C3Y97_25885	COG0739	heme binding
C3Y97_25895	COG3377	Domain of unknown function (DUF1805)
C3Y97_25900	COG0737	Belongs to the 5'-nucleotidase family
C3Y97_25915	COG0719	Fe-S assembly protein
C3Y97_25920	COG0822	iron-sulfur transferase activity
C3Y97_25925	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
C3Y97_25930	COG0719	Fe-S assembly protein
C3Y97_25935	COG0396	ATPase activity
C3Y97_25940	COG1464	Belongs to the NlpA lipoprotein family
C3Y97_25945	COG1464	Belongs to the NlpA lipoprotein family
C3Y97_25950	COG2011	ABC-type metal ion transport system permease component
C3Y97_25955	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
C3Y97_25965	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
C3Y97_25970	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
C3Y97_25980	COG1393	Belongs to the ArsC family
C3Y97_26025	COG1309	transcriptional regulator
C3Y97_26030	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
C3Y97_26035	COG1960	acyl-CoA dehydrogenase activity
C3Y97_26040	COG0183	Belongs to the thiolase family
C3Y97_26045	COG1024	Enoyl-CoA hydratase
C3Y97_26045	COG1250	3-hydroxyacyl-CoA dehydrogenase
C3Y97_26060	COG1686	Belongs to the peptidase S11 family
C3Y97_26075	COG0011	TIGRFAM Protein of
C3Y97_26080	COG0840	transmembrane signaling receptor activity
C3Y97_26095	COG2814	Major facilitator Superfamily
C3Y97_26100	COG0531	amino acid
C3Y97_26125	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
C3Y97_26165	COG0586	Pfam SNARE associated Golgi protein
C3Y97_26175	COG1376	ErfK ybiS ycfS ynhG family protein
C3Y97_26180	COG0745	RESPONSE REGULATOR receiver
C3Y97_26185	COG5002	protein histidine kinase activity
C3Y97_26215	COG0840	transmembrane signaling receptor activity
C3Y97_26220	COG2151	metal-sulfur cluster biosynthetic enzyme
C3Y97_26225	COG3227	Zinc metalloprotease (Elastase)
C3Y97_26230	COG1741	Belongs to the pirin family
C3Y97_26245	COG0586	Pfam SNARE associated Golgi protein
C3Y97_26250	COG0475	glutathione-regulated potassium exporter activity
C3Y97_26255	COG0490	domain, Protein
C3Y97_26265	COG1115	amino acid carrier protein
C3Y97_26275	COG0783	Belongs to the Dps family
C3Y97_26290	COG1611	Belongs to the LOG family
C3Y97_26300	COG1528	Iron-storage protein
C3Y97_26310	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
C3Y97_26315	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
C3Y97_26320	COG1115	amino acid carrier protein
C3Y97_26325	COG1115	amino acid carrier protein
C3Y97_26330	COG2910	NAD(P)H-binding
C3Y97_26350	COG0656	L-ascorbic acid biosynthetic process
C3Y97_26355	COG2814	Major facilitator Superfamily
C3Y97_26360	COG1733	regulation of RNA biosynthetic process
C3Y97_26370	COG1252	NADH dehydrogenase
C3Y97_26390	COG3290	protein histidine kinase activity
C3Y97_26390	COG0840	transmembrane signaling receptor activity
C3Y97_26425	COG0488	(ABC) transporter
C3Y97_26430	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
C3Y97_26435	COG3223	Belongs to the PsiE family
C3Y97_26520	COG0557	exoribonuclease II activity
C3Y97_26525	COG1647	Serine aminopeptidase, S33
C3Y97_26530	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
C3Y97_26535	COG1346	cytolysis
C3Y97_26570	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
C3Y97_26585	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
C3Y97_26610	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
C3Y97_26625	COG2323	membrane
C3Y97_26635	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
C3Y97_26645	COG0391	Required for morphogenesis under gluconeogenic growth conditions
C3Y97_26655	COG1051	belongs to the nudix hydrolase family
C3Y97_26665	COG0492	ferredoxin-NADP+ reductase activity
C3Y97_26670	COG0457	Tetratricopeptide repeat
C3Y97_26675	COG0110	maltose O-acetyltransferase activity
C3Y97_26695	COG1950	PFAM Membrane protein of
C3Y97_26705	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
C3Y97_26725	COG0789	Transcriptional regulator
C3Y97_26745	COG0583	DNA-binding transcription factor activity
C3Y97_26755	COG0655	NAD(P)H dehydrogenase (quinone) activity
C3Y97_26770	COG1132	(ABC) transporter
C3Y97_26775	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
C3Y97_26780	COG3409	Peptidoglycan-binding domain 1 protein
C3Y97_26780	COG0793	Belongs to the peptidase S41A family
C3Y97_26785	COG2177	Part of the ABC transporter FtsEX involved in
C3Y97_26790	COG2884	Cell division ATP-binding protein ftsE
C3Y97_26820	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
C3Y97_26825	COG1278	Cold shock
C3Y97_26830	COG1040	competence protein
C3Y97_26835	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
C3Y97_26840	COG0791	NLP P60 protein
C3Y97_26840	COG1388	LysM domain
C3Y97_26845	COG1733	regulation of RNA biosynthetic process
C3Y97_26855	COG1307	EDD domain protein, DegV family
C3Y97_26860	COG1739	Uncharacterized protein family UPF0029
C3Y97_26865	COG1316	TRANSCRIPTIONal
C3Y97_26870	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
C3Y97_26875	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
C3Y97_26880	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
C3Y97_26890	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
C3Y97_26890	COG3933	PFAM sigma-54 factor interaction domain-containing protein
C3Y97_26910	COG1486	melibiose metabolic process
C3Y97_26915	COG1447	Phosphotransferase system cellobiose-specific component IIA
C3Y97_26920	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
C3Y97_26940	COG1447	Phosphotransferase system cellobiose-specific component IIA
C3Y97_26950	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
C3Y97_26955	COG1301	dicarboxylic acid transport
C3Y97_26970	COG1511	domain protein
C3Y97_26975	COG0583	DNA-binding transcription factor activity
C3Y97_26980	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
C3Y97_26985	COG1271	oxidase subunit
C3Y97_26990	COG1294	oxidase, subunit
C3Y97_26995	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
C3Y97_27025	COG1620	l-lactate permease
C3Y97_27035	COG2389	metal-binding protein
C3Y97_27050	COG1368	sulfuric ester hydrolase activity
C3Y97_27065	COG0791	NLP P60 protein
C3Y97_27065	COG1388	LysM domain
C3Y97_27070	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
C3Y97_27080	COG1215	transferase activity, transferring glycosyl groups
C3Y97_27090	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
C3Y97_27100	COG1388	LysM domain
C3Y97_27100	COG3584	3D domain protein
C3Y97_27130	COG4715	Zinc finger, swim domain protein
C3Y97_27135	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
C3Y97_27165	COG1191	sigma factor activity
C3Y97_27175	COG0577	efflux transmembrane transporter activity
C3Y97_27180	COG1136	(ABC) transporter
C3Y97_27200	COG2271	Major facilitator Superfamily
C3Y97_27215	COG5002	protein histidine kinase activity
C3Y97_27220	COG0745	RESPONSE REGULATOR receiver
C3Y97_27225	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
C3Y97_27245	COG0438	transferase activity, transferring glycosyl groups
C3Y97_27250	COG1216	Glycosyl transferase, family 2
C3Y97_27250	COG0463	Glycosyl transferase, family 2
C3Y97_27285	COG1210	Utp--glucose-1-phosphate uridylyltransferase
C3Y97_27290	COG4464	protein tyrosine phosphatase activity
C3Y97_27295	COG0489	protein tyrosine kinase activity
C3Y97_27300	COG3944	biosynthesis protein
C3Y97_27305	COG0489	protein tyrosine kinase activity
C3Y97_27320	COG1609	Transcriptional regulator
C3Y97_27335	COG0739	heme binding
C3Y97_27350	COG3279	Response regulator of the LytR AlgR family
C3Y97_27355	COG2385	sporulation resulting in formation of a cellular spore
C3Y97_27370	COG4836	Membrane
C3Y97_27375	COG1007	ATP synthesis coupled electron transport
C3Y97_27380	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
C3Y97_27385	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
C3Y97_27395	COG0839	Belongs to the complex I subunit 6 family
C3Y97_27415	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
C3Y97_27430	COG5001	Diguanylate cyclase
C3Y97_27430	COG3300	MHYT domain
C3Y97_27480	COG0356	it plays a direct role in the translocation of protons across the membrane
C3Y97_27515	COG0698	ribose 5-phosphate isomerase
C3Y97_27535	COG2259	Doxx family
C3Y97_27540	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
C3Y97_27560	COG0009	L-threonylcarbamoyladenylate synthase
C3Y97_27600	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
C3Y97_27605	COG1494	fructose-1,6-bisphosphatase
C3Y97_27625	COG4821	SIS domain
C3Y97_27645	COG1960	acyl-CoA dehydrogenase activity
C3Y97_27650	COG1960	acyl-CoA dehydrogenase activity
C3Y97_27655	COG1250	3-hydroxyacyl-CoA dehydrogenase
C3Y97_27660	COG0183	Belongs to the thiolase family
C3Y97_27665	COG2181	nitrate reductase activity
C3Y97_27665	COG0247	lactate metabolic process
C3Y97_27670	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
C3Y97_27680	COG3300	MHYT domain
C3Y97_27680	COG5001	Diguanylate cyclase
C3Y97_27695	COG3227	Zinc metalloprotease (Elastase)
C3Y97_27700	COG2197	response regulator
C3Y97_27705	COG4585	Histidine kinase
C3Y97_27710	COG0842	Transport permease protein
C3Y97_27715	COG1131	(ABC) transporter
C3Y97_27720	COG0024	Methionine aminopeptidase
C3Y97_27730	COG2234	aminopeptidase activity
C3Y97_27750	COG1595	DNA-templated transcription, initiation
C3Y97_27755	COG1595	DNA-templated transcription, initiation
C3Y97_27765	COG4506	Protein conserved in bacteria
C3Y97_27770	COG1619	proteins homologs of microcin C7 resistance protein MccF
C3Y97_27790	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
C3Y97_27795	COG2814	Major facilitator Superfamily
C3Y97_27800	COG0789	Transcriptional regulator
C3Y97_27805	COG0584	glycerophosphoryl diester phosphodiesterase
C3Y97_27810	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
C3Y97_27820	COG1994	Peptidase M50
C3Y97_27830	COG1078	dGTPase activity
C3Y97_27835	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
C3Y97_27840	COG1120	ATPase activity
C3Y97_27845	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
C3Y97_27850	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
C3Y97_27870	COG0280	phosphate acetyltransferase
C3Y97_27885	COG3773	Cell wall hydrolase
C3Y97_27895	COG2363	Small membrane protein
C3Y97_27905	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
C3Y97_27910	COG2233	PERMEase
C3Y97_27915	COG0561	phosphatase activity
C3Y97_27920	COG2814	Major facilitator Superfamily
C3Y97_27930	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
C3Y97_27935	COG1131	(ABC) transporter
C3Y97_27940	COG2755	lipolytic protein G-D-S-L family
C3Y97_27945	COG1609	Transcriptional regulator
C3Y97_27955	COG0460	homoserine dehydrogenase
C3Y97_27975	COG1011	Hydrolase
C3Y97_27980	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
C3Y97_27990	COG2197	response regulator
C3Y97_27995	COG4585	Histidine kinase
C3Y97_27995	COG2203	Gaf domain
C3Y97_28000	COG0351	phosphomethylpyrimidine kinase
C3Y97_28005	COG3706	GGDEF domain
C3Y97_28010	COG2879	small protein
C3Y97_28015	COG1966	Carbon starvation protein
C3Y97_28020	COG3279	Response regulator of the LytR AlgR family
C3Y97_28025	COG0477	Major facilitator Superfamily
C3Y97_28040	COG0438	transferase activity, transferring glycosyl groups
C3Y97_28055	COG0840	transmembrane signaling receptor activity
C3Y97_28065	COG1607	acyl-coa hydrolase
C3Y97_28075	COG1216	Glycosyl transferase, family 2
C3Y97_28090	COG0463	Glycosyl transferase, family 2
C3Y97_28095	COG0488	(ABC) transporter
C3Y97_28110	COG1309	transcriptional regulator
C3Y97_28115	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
C3Y97_28120	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
C3Y97_28120	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
C3Y97_28125	COG0628	permease
C3Y97_28150	COG2814	Major facilitator Superfamily
C3Y97_28155	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
C3Y97_28160	COG4362	Belongs to the NOS family. Bacterial NOS oxygenase subfamily
C3Y97_28190	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
C3Y97_28195	COG1272	protein, Hemolysin III
C3Y97_28215	COG1164	Oligoendopeptidase f
C3Y97_28225	COG5002	protein histidine kinase activity
C3Y97_28240	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
C3Y97_28245	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
C3Y97_28250	COG4853	Protein conserved in bacteria
C3Y97_28260	COG5002	protein histidine kinase activity
C3Y97_28265	COG0745	RESPONSE REGULATOR receiver
C3Y97_28295	COG0305	Participates in initiation and elongation during chromosome replication
C3Y97_28305	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
C3Y97_28310	COG4241	membrane
C3Y97_28330	COG0012	GTP binding
C3Y97_28335	COG4481	Protein conserved in bacteria
C3Y97_28340	COG0668	transmembrane transport
C3Y97_28350	COG1475	DNA binding
C3Y97_28355	COG1192	Involved in chromosome partitioning
C3Y97_28380	COG1847	R3H domain protein