MY9_0001 SM00382 ATPases associated with a variety of cellular activities MY9_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain MY9_0002 SM00480 DNA polymerase III beta subunit MY9_0006 SM00387 Histidine kinase-like ATPases MY9_0006 SM00433 TopoisomeraseII MY9_0007 SM00434 DNA Topoisomerase IV MY9_0009 SM00116 Domain in cystathionine beta-synthase and other proteins. MY9_0009 SM01240 MY9_0009 MY9_0010 SM00936 Penicillin-binding protein 5, C-terminal domain MY9_0016 SM00257 Lysin motif MY9_0016 SM00636 MY9_0016 MY9_0019 SM00382 ATPases associated with a variety of cellular activities MY9_0021 SM00493 MY9_0021 MY9_0035 SM00465 GIY-YIG type nucleases (URI domain) MY9_0037 SM00966 SpoVT / AbrB like domain MY9_0040 SM01208 MY9_0040 MY9_0041 SM00493 MY9_0041 MY9_0042 SM00650 Ribosomal RNA adenine dimethylases MY9_0051 SM01400 MY9_0051 MY9_0054 SM00487 DEAD-like helicases superfamily MY9_0054 SM00490 helicase superfamily c-terminal domain MY9_0054 SM00982 MY9_0054 MY9_0054 SM01058 CarD-like/TRCF domain MY9_0055 SM00966 SpoVT / AbrB like domain MY9_0058 SM00363 S4 RNA-binding domain MY9_0061 SM00316 Ribosomal protein S1-like RNA-binding domain MY9_0062 SM00331 Sigma factor PP2C-like phosphatases MY9_0062 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain MY9_0064 SM00220 Serine/Threonine protein kinases, catalytic domain MY9_0066 SM00382 ATPases associated with a variety of cellular activities MY9_0075 SM00905 Dihydroneopterin aldolase MY9_0077 SM00530 Helix-turn-helix XRE-family like proteins MY9_0085 SM00382 ATPases associated with a variety of cellular activities MY9_0085 SM01086 C-terminal, D2-small domain, of ClpB protein MY9_0086 SM00382 ATPases associated with a variety of cellular activities MY9_0088 SM00670 Large family of predicted nucleotide-binding domains MY9_0095 SM00840 MY9_0095 MY9_0096 SM00535 Ribonuclease III family MY9_0097 SM00967 RNA 2'-O ribose methyltransferase substrate binding MY9_0101 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. MY9_0101 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. MY9_0102 SM00649 Ribosomal protein L11/L12 MY9_0108 SM00663 RNA polymerase I subunit A N-terminus MY9_0112 SM00838 Elongation factor G C-terminus MY9_0112 SM00889 Elongation factor G, domain IV MY9_0115 SM01403 MY9_0115 MY9_0119 SM01382 MY9_0119 MY9_0119 SM01383 MY9_0119 MY9_0122 SM00322 K homology RNA-binding domain MY9_0126 SM01374 MY9_0126 MY9_0127 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. MY9_0140 SM00316 Ribosomal protein S1-like RNA-binding domain MY9_0144 SM00662 RNA polymerases D MY9_0146 SM00382 ATPases associated with a variety of cellular activities MY9_0147 SM00382 ATPases associated with a variety of cellular activities MY9_0154 SM00646 MY9_0154 MY9_0157 SM01251 MY9_0157 MY9_0162 SM00829 Enoylreductase MY9_0169 SM00342 helix_turn_helix, arabinose operon control protein MY9_0184 SM00478 endonuclease III MY9_0186 SM00342 helix_turn_helix, arabinose operon control protein MY9_0193 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MY9_0199 SM00448 cheY-homologous receiver domain MY9_0199 SM00862 Transcriptional regulatory protein, C terminal MY9_0200 SM00387 Histidine kinase-like ATPases MY9_0200 SM00388 His Kinase A (phosphoacceptor) domain MY9_0217 SM00347 helix_turn_helix multiple antibiotic resistance protein MY9_0222 SM00342 helix_turn_helix, arabinose operon control protein MY9_0233 SM00450 Rhodanese Homology Domain MY9_0237 SM00345 helix_turn_helix gluconate operon transcriptional repressor MY9_0237 SM00866 MY9_0237 MY9_0245 SM00387 Histidine kinase-like ATPases MY9_0246 SM00448 cheY-homologous receiver domain MY9_0250 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MY9_0251 SM00345 helix_turn_helix gluconate operon transcriptional repressor MY9_0251 SM00895 MY9_0251 MY9_0252 SM00858 MY9_0252 MY9_0257 SM00448 cheY-homologous receiver domain MY9_0257 SM00862 Transcriptional regulatory protein, C terminal MY9_0258 SM00387 Histidine kinase-like ATPases MY9_0258 SM00388 His Kinase A (phosphoacceptor) domain MY9_0259 SM00382 ATPases associated with a variety of cellular activities MY9_0274 SM00870 MY9_0274 MY9_0278 SM00387 Histidine kinase-like ATPases MY9_0279 SM00448 cheY-homologous receiver domain MY9_0279 SM00850 LytTr DNA-binding domain MY9_0280 SM00382 ATPases associated with a variety of cellular activities MY9_0288 SM00028 Tetratricopeptide repeats MY9_0290 SM00642 Alpha-amylase domain MY9_0292 SM00382 ATPases associated with a variety of cellular activities MY9_0303 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MY9_0305 SM00116 Domain in cystathionine beta-synthase and other proteins. MY9_0305 SM00382 ATPases associated with a variety of cellular activities MY9_0311 SM00632 MY9_0311 MY9_0311 SM00642 Alpha-amylase domain MY9_0316 SM00347 helix_turn_helix multiple antibiotic resistance protein MY9_0348 SM00833 Cobalamin synthesis protein cobW C-terminal domain MY9_0350 SM00062 Bacterial periplasmic substrate-binding proteins MY9_0353 SM00347 helix_turn_helix multiple antibiotic resistance protein MY9_0355 SM00382 ATPases associated with a variety of cellular activities MY9_0359 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MY9_0359 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MY9_0361 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family MY9_0365 SM00823 Phosphopantetheine attachment site MY9_0365 SM01294 MY9_0365 MY9_0366 SM00823 Phosphopantetheine attachment site MY9_0366 SM01294 MY9_0366 MY9_0367 SM00823 Phosphopantetheine attachment site MY9_0371 SM00345 helix_turn_helix gluconate operon transcriptional repressor MY9_0375 SM00382 ATPases associated with a variety of cellular activities MY9_0377 SM00062 Bacterial periplasmic substrate-binding proteins MY9_0384 SM00710 Parallel beta-helix repeats MY9_0384 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses MY9_0389 SM00382 ATPases associated with a variety of cellular activities MY9_0391 SM00448 cheY-homologous receiver domain MY9_0391 SM00862 Transcriptional regulatory protein, C terminal MY9_0392 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MY9_0392 SM00387 Histidine kinase-like ATPases MY9_0392 SM00388 His Kinase A (phosphoacceptor) domain MY9_0393 SM00028 Tetratricopeptide repeats MY9_0398 SM00382 ATPases associated with a variety of cellular activities MY9_0404 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MY9_0405 SM00345 helix_turn_helix gluconate operon transcriptional repressor MY9_0412 SM00420 helix_turn_helix, Deoxyribose operon repressor MY9_0417 SM01329 MY9_0417 MY9_0426 SM00796 Allophanate hydrolase subunit 1 MY9_0427 SM00797 Allophanate hydrolase subunit 2 MY9_0428 SM00346 helix_turn_helix isocitrate lyase regulation MY9_0444 SM00344 helix_turn_helix ASNC type MY9_0445 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain MY9_0445 SM00437 Bacterial DNA topoisomerase I DNA-binding domain MY9_0445 SM00493 MY9_0445 MY9_0447 SM00267 diguanylate cyclase MY9_0466 SM00091 PAS domain MY9_0466 SM00387 Histidine kinase-like ATPases MY9_0467 SM00448 cheY-homologous receiver domain MY9_0471 SM00382 ATPases associated with a variety of cellular activities MY9_0481 SM00487 DEAD-like helicases superfamily MY9_0481 SM00490 helicase superfamily c-terminal domain MY9_0487 SM01005 Alanine racemase, C-terminal domain MY9_0492 SM00387 Histidine kinase-like ATPases MY9_0493 SM00331 Sigma factor PP2C-like phosphatases MY9_0497 SM00331 Sigma factor PP2C-like phosphatases MY9_0497 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain MY9_0500 SM00347 helix_turn_helix multiple antibiotic resistance protein MY9_0501 SM00316 Ribosomal protein S1-like RNA-binding domain MY9_0501 SM00732 Likely ribonuclease with RNase H fold. MY9_0503 SM00731 SprT homologues. MY9_0506 SM00530 Helix-turn-helix XRE-family like proteins MY9_0533 SM00028 Tetratricopeptide repeats MY9_0534 SM00901 MY9_0534 MY9_0537 SM00860 SMI1 / KNR4 family MY9_0547 SM01130 MY9_0547 MY9_0555 SM00357 Cold shock protein domain MY9_0558 SM00342 helix_turn_helix, arabinose operon control protein MY9_0560 SM00342 helix_turn_helix, arabinose operon control protein MY9_0560 SM00871 Bacterial transcription activator, effector binding domain MY9_0561 SM00345 helix_turn_helix gluconate operon transcriptional repressor MY9_0567 SM00345 helix_turn_helix gluconate operon transcriptional repressor MY9_0583 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MY9_0583 SM00387 Histidine kinase-like ATPases MY9_0583 SM00388 His Kinase A (phosphoacceptor) domain MY9_0584 SM00448 cheY-homologous receiver domain MY9_0584 SM00862 Transcriptional regulatory protein, C terminal MY9_0586 SM00345 helix_turn_helix gluconate operon transcriptional repressor MY9_0588 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MY9_0593 SM00387 Histidine kinase-like ATPases MY9_0594 SM00421 helix_turn_helix, Lux Regulon MY9_0594 SM00448 cheY-homologous receiver domain MY9_0599 SM00345 helix_turn_helix gluconate operon transcriptional repressor MY9_0606 SM00422 helix_turn_helix, mercury resistance MY9_0606 SM00871 Bacterial transcription activator, effector binding domain MY9_0623 SM00382 ATPases associated with a variety of cellular activities MY9_0626 SM00347 helix_turn_helix multiple antibiotic resistance protein MY9_0629 SM00347 helix_turn_helix multiple antibiotic resistance protein MY9_0629 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MY9_0632 SM00345 helix_turn_helix gluconate operon transcriptional repressor MY9_0632 SM00895 MY9_0632 MY9_0633 SM00257 Lysin motif MY9_0633 SM00636 MY9_0633 MY9_0636 SM00098 Alkaline phosphatase homologues MY9_0640 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MY9_0648 SM00345 helix_turn_helix gluconate operon transcriptional repressor MY9_0648 SM00866 MY9_0648 MY9_0659 SM00382 ATPases associated with a variety of cellular activities MY9_0661 SM00881 CoA binding domain MY9_0666 SM00883 Chaperonin 10 Kd subunit MY9_0670 SM00342 helix_turn_helix, arabinose operon control protein MY9_0683 SM00382 ATPases associated with a variety of cellular activities MY9_0684 SM00028 Tetratricopeptide repeats MY9_0684 SM00382 ATPases associated with a variety of cellular activities MY9_0685 SM00829 Enoylreductase MY9_0695 SM00829 Enoylreductase MY9_0707 SM00460 Transglutaminase/protease-like homologues MY9_0717 SM01001 AIR carboxylase MY9_0719 SM00998 Adenylosuccinate lyase C-terminus MY9_0722 SM01211 MY9_0722 MY9_0727 SM00798 AICARFT/IMPCHase bienzyme MY9_0727 SM00851 MGS-like domain MY9_0728 SM01209 MY9_0728 MY9_0728 SM01210 MY9_0728 MY9_0729 SM00344 helix_turn_helix ASNC type MY9_0738 SM00278 Helix-hairpin-helix DNA-binding motif class 1 MY9_0738 SM00292 breast cancer carboxy-terminal domain MY9_0738 SM00532 Ligase N family MY9_0749 SM00822 MY9_0749 MY9_0749 SM00823 Phosphopantetheine attachment site MY9_0749 SM00825 Beta-ketoacyl synthase MY9_0749 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. MY9_0750 SM00823 Phosphopantetheine attachment site MY9_0751 SM00822 MY9_0751 MY9_0751 SM00823 Phosphopantetheine attachment site MY9_0751 SM00825 Beta-ketoacyl synthase MY9_0751 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. MY9_0752 SM00822 MY9_0752 MY9_0752 SM00823 Phosphopantetheine attachment site MY9_0752 SM00825 Beta-ketoacyl synthase MY9_0752 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. MY9_0753 SM00823 Phosphopantetheine attachment site MY9_0753 SM00825 Beta-ketoacyl synthase MY9_0753 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. MY9_0755 SM00098 Alkaline phosphatase homologues MY9_0760 SM00845 GatB domain MY9_0763 SM00046 Diacylglycerol kinase catalytic domain (presumed) MY9_0773 SM00028 Tetratricopeptide repeats MY9_0787 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MY9_0787 SM00387 Histidine kinase-like ATPases MY9_0788 SM00342 helix_turn_helix, arabinose operon control protein MY9_0788 SM00448 cheY-homologous receiver domain MY9_0793 SM00342 helix_turn_helix, arabinose operon control protein MY9_0830 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MY9_0831 SM00382 ATPases associated with a variety of cellular activities MY9_0833 SM00422 helix_turn_helix, mercury resistance MY9_0836 SM00382 ATPases associated with a variety of cellular activities MY9_0837 SM00487 DEAD-like helicases superfamily MY9_0837 SM00490 helicase superfamily c-terminal domain MY9_0839 SM00829 Enoylreductase MY9_0840 SM00382 ATPases associated with a variety of cellular activities MY9_0846 SM00656 MY9_0846 MY9_0848 SM00387 Histidine kinase-like ATPases MY9_0849 SM00448 cheY-homologous receiver domain MY9_0852 SM00849 Metallo-beta-lactamase superfamily MY9_0868 SM00642 Alpha-amylase domain MY9_0869 SM00345 helix_turn_helix gluconate operon transcriptional repressor MY9_0869 SM00866 MY9_0869 MY9_0877 SM00226 Low molecular weight phosphatase family MY9_0890 SM00478 endonuclease III MY9_0898 SM00861 Transketolase, pyrimidine binding domain MY9_0901 SM00382 ATPases associated with a variety of cellular activities MY9_0912 SM00382 ATPases associated with a variety of cellular activities MY9_0913 SM00382 ATPases associated with a variety of cellular activities MY9_0916 SM00387 Histidine kinase-like ATPases MY9_0917 SM00421 helix_turn_helix, Lux Regulon MY9_0917 SM00448 cheY-homologous receiver domain MY9_0918 SM00382 ATPases associated with a variety of cellular activities MY9_0930 SM00347 helix_turn_helix multiple antibiotic resistance protein MY9_0946 SM00287 Bacterial SH3 domain homologues MY9_0952 SM00478 endonuclease III MY9_0952 SM00525 MY9_0952 MY9_0958 SM00382 ATPases associated with a variety of cellular activities MY9_0973 SM01060 MY9_0973 MY9_0974 SM00382 ATPases associated with a variety of cellular activities MY9_0975 SM00062 Bacterial periplasmic substrate-binding proteins MY9_0982 SM00530 Helix-turn-helix XRE-family like proteins MY9_0984 SM00567 E-Z type HEAT repeats MY9_0990 SM00763 PrkA AAA domain MY9_0992 SM00347 helix_turn_helix multiple antibiotic resistance protein MY9_0998 SM00345 helix_turn_helix gluconate operon transcriptional repressor MY9_0999 SM00382 ATPases associated with a variety of cellular activities MY9_1000 SM00382 ATPases associated with a variety of cellular activities MY9_1003 SM00357 Cold shock protein domain MY9_1005 SM00267 diguanylate cyclase MY9_1014 SM00318 Staphylococcal nuclease homologues MY9_1016 SM00363 S4 RNA-binding domain MY9_1018 SM00116 Domain in cystathionine beta-synthase and other proteins. MY9_1028 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. MY9_1028 SM00387 Histidine kinase-like ATPases MY9_1029 SM00421 helix_turn_helix, Lux Regulon MY9_1029 SM00448 cheY-homologous receiver domain MY9_1033 SM00257 Lysin motif MY9_1037 SM00098 Alkaline phosphatase homologues MY9_1038 SM00257 Lysin motif MY9_1044 SM00345 helix_turn_helix gluconate operon transcriptional repressor MY9_1050 SM00563 Phosphate acyltransferases MY9_1051 SM01091 Transporter associated domain MY9_1052 SM00422 helix_turn_helix, mercury resistance MY9_1054 SM01091 Transporter associated domain MY9_1066 SM00382 ATPases associated with a variety of cellular activities MY9_1067 SM00382 ATPases associated with a variety of cellular activities MY9_1079 SM00729 Elongator protein 3, MiaB family, Radical SAM MY9_1085 SM00382 ATPases associated with a variety of cellular activities MY9_1089 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MY9_1096 SM00347 helix_turn_helix multiple antibiotic resistance protein MY9_1103 SM00382 ATPases associated with a variety of cellular activities MY9_1122 SM01022 MY9_1122 MY9_1125 SM00849 Metallo-beta-lactamase superfamily MY9_1133 SM00829 Enoylreductase MY9_1136 SM00855 Phosphoglycerate mutase family MY9_1140 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MY9_1143 SM00914 MY9_1143 MY9_1146 SM00894 Excalibur calcium-binding domain MY9_1153 SM00347 helix_turn_helix multiple antibiotic resistance protein MY9_1181 SM00342 helix_turn_helix, arabinose operon control protein MY9_1182 SM00354 helix_turn _helix lactose operon repressor MY9_1195 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MY9_1201 SM00316 Ribosomal protein S1-like RNA-binding domain MY9_1203 SM00752 Horizontally Transferred TransMembrane Domain MY9_1220 SM00859 Semialdehyde dehydrogenase, NAD binding domain MY9_1224 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain MY9_1225 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MY9_1235 SM00825 Beta-ketoacyl synthase MY9_1237 SM00382 ATPases associated with a variety of cellular activities MY9_1238 SM00382 ATPases associated with a variety of cellular activities MY9_1247 SM00382 ATPases associated with a variety of cellular activities MY9_1248 SM00382 ATPases associated with a variety of cellular activities MY9_1263 SM01118 MY9_1263 MY9_1265 SM00954 Region found in RelA / SpoT proteins MY9_1328 SM00926 Molybdopterin oxidoreductase Fe4S4 domain MY9_1328 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region MY9_1338 SM00382 ATPases associated with a variety of cellular activities MY9_1340 SM00835 Cupin MY9_1347 SM00829 Enoylreductase MY9_1351 SM00354 helix_turn _helix lactose operon repressor MY9_1353 SM00858 MY9_1353 MY9_1356 SM00382 ATPases associated with a variety of cellular activities MY9_1357 SM00028 Tetratricopeptide repeats MY9_1360 SM00257 Lysin motif MY9_1360 SM00644 MY9_1360 MY9_1365 SM00530 Helix-turn-helix XRE-family like proteins MY9_1368 SM00382 ATPases associated with a variety of cellular activities MY9_1389 SM00257 Lysin motif MY9_1402 SM00257 Lysin motif MY9_1402 SM00644 MY9_1402 MY9_1414 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MY9_1419 SM00382 ATPases associated with a variety of cellular activities MY9_1423 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MY9_1425 SM00382 ATPases associated with a variety of cellular activities MY9_1437 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase MY9_1440 SM00347 helix_turn_helix multiple antibiotic resistance protein MY9_1444 SM00855 Phosphoglycerate mutase family MY9_1451 SM00382 ATPases associated with a variety of cellular activities MY9_1454 SM00448 cheY-homologous receiver domain MY9_1454 SM00862 Transcriptional regulatory protein, C terminal MY9_1455 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MY9_1455 SM00387 Histidine kinase-like ATPases MY9_1455 SM00388 His Kinase A (phosphoacceptor) domain MY9_1458 SM00116 Domain in cystathionine beta-synthase and other proteins. MY9_1458 SM00924 MgtE intracellular N domain MY9_1459 SM00422 helix_turn_helix, mercury resistance MY9_1462 SM00347 helix_turn_helix multiple antibiotic resistance protein MY9_1469 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen MY9_1470 SM00052 Putative diguanylate phosphodiesterase MY9_1470 SM00267 diguanylate cyclase MY9_1481 SM00091 PAS domain MY9_1481 SM00387 Histidine kinase-like ATPases MY9_1481 SM00388 His Kinase A (phosphoacceptor) domain MY9_1490 SM01007 Class II Aldolase and Adducin N-terminal domain MY9_1495 SM00387 Histidine kinase-like ATPases MY9_1495 SM00388 His Kinase A (phosphoacceptor) domain MY9_1496 SM00347 helix_turn_helix multiple antibiotic resistance protein MY9_1499 SM00382 ATPases associated with a variety of cellular activities MY9_1499 SM01086 C-terminal, D2-small domain, of ClpB protein MY9_1504 SM00530 Helix-turn-helix XRE-family like proteins MY9_1521 SM00354 helix_turn _helix lactose operon repressor MY9_1522 SM01061 CAT RNA binding domain MY9_1529 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MY9_1529 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MY9_1535 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MY9_1535 SM00091 PAS domain MY9_1535 SM00387 Histidine kinase-like ATPases MY9_1535 SM00388 His Kinase A (phosphoacceptor) domain MY9_1538 SM00260 Two component signalling adaptor domain MY9_1538 SM00448 cheY-homologous receiver domain MY9_1541 SM00257 Lysin motif MY9_1544 SM00052 Putative diguanylate phosphodiesterase MY9_1564 SM00852 Probable molybdopterin binding domain MY9_1568 SM00382 ATPases associated with a variety of cellular activities MY9_1569 SM00382 ATPases associated with a variety of cellular activities MY9_1572 SM00382 ATPases associated with a variety of cellular activities MY9_1573 SM01066 Carbohydrate binding domain MY9_1574 SM00420 helix_turn_helix, Deoxyribose operon repressor MY9_1574 SM01134 MY9_1574 MY9_1579 SM00382 ATPases associated with a variety of cellular activities MY9_1585 SM00966 SpoVT / AbrB like domain MY9_1586 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MY9_1586 SM00091 PAS domain MY9_1586 SM00387 Histidine kinase-like ATPases MY9_1586 SM00388 His Kinase A (phosphoacceptor) domain MY9_1590 SM00849 Metallo-beta-lactamase superfamily MY9_1598 SM00861 Transketolase, pyrimidine binding domain MY9_1617 SM00838 Elongation factor G C-terminus MY9_1621 SM00670 Large family of predicted nucleotide-binding domains MY9_1626 SM00878 Biotin carboxylase C-terminal domain MY9_1647 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MY9_1659 SM00740 MY9_1659 MY9_1660 SM00740 MY9_1660 MY9_1672 SM00842 Cell division protein FtsA MY9_1673 SM00864 Tubulin/FtsZ family, GTPase domain MY9_1673 SM00865 Tubulin/FtsZ family, C-terminal domain MY9_1678 SM00382 ATPases associated with a variety of cellular activities MY9_1686 SM00363 S4 RNA-binding domain MY9_1692 SM00363 S4 RNA-binding domain MY9_1697 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain MY9_1698 SM00851 MGS-like domain MY9_1698 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MY9_1698 SM01209 MY9_1698 MY9_1701 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family MY9_1711 SM00831 Cation transporter/ATPase, N-terminus MY9_1714 SM00072 Guanylate kinase homologues. MY9_1715 SM01409 MY9_1715 MY9_1717 SM00487 DEAD-like helicases superfamily MY9_1717 SM00490 helicase superfamily c-terminal domain MY9_1722 SM00331 Sigma factor PP2C-like phosphatases MY9_1722 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain MY9_1723 SM00220 Serine/Threonine protein kinases, catalytic domain MY9_1723 SM00740 MY9_1723 MY9_1726 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain MY9_1730 SM01120 MY9_1730 MY9_1730 SM01121 MY9_1730 MY9_1733 SM00487 DEAD-like helicases superfamily MY9_1733 SM00490 helicase superfamily c-terminal domain MY9_1736 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. MY9_1737 SM00822 MY9_1737 MY9_1739 SM00358 Double-stranded RNA binding motif MY9_1739 SM00535 Ribonuclease III family MY9_1740 SM00968 SMC proteins Flexible Hinge Domain MY9_1741 SM00382 ATPases associated with a variety of cellular activities MY9_1741 SM00962 SRP54-type protein, GTPase domain MY9_1741 SM00963 SRP54-type protein, helical bundle domain MY9_1744 SM00382 ATPases associated with a variety of cellular activities MY9_1744 SM00962 SRP54-type protein, GTPase domain MY9_1744 SM00963 SRP54-type protein, helical bundle domain MY9_1756 SM00881 CoA binding domain MY9_1758 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain MY9_1758 SM00437 Bacterial DNA topoisomerase I DNA-binding domain MY9_1758 SM00493 MY9_1758 MY9_1762 SM00382 ATPases associated with a variety of cellular activities MY9_1762 SM01086 C-terminal, D2-small domain, of ClpB protein MY9_1771 SM00382 ATPases associated with a variety of cellular activities MY9_1781 SM00448 cheY-homologous receiver domain MY9_1788 SM00962 SRP54-type protein, GTPase domain MY9_1790 SM00448 cheY-homologous receiver domain MY9_1791 SM00073 Histidine Phosphotransfer domain MY9_1791 SM00260 Two component signalling adaptor domain MY9_1791 SM00387 Histidine kinase-like ATPases MY9_1791 SM01231 MY9_1791 MY9_1792 SM00260 Two component signalling adaptor domain MY9_1803 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MY9_1805 SM00479 MY9_1805 MY9_1805 SM00481 DNA polymerase alpha chain like domain MY9_1807 SM00316 Ribosomal protein S1-like RNA-binding domain MY9_1807 SM00322 K homology RNA-binding domain MY9_1814 SM00904 Riboflavin kinase MY9_1815 SM01387 MY9_1815 MY9_1816 SM00316 Ribosomal protein S1-like RNA-binding domain MY9_1816 SM00322 K homology RNA-binding domain MY9_1823 SM00859 Semialdehyde dehydrogenase, NAD binding domain MY9_1825 SM01130 MY9_1825 MY9_1826 SM00849 Metallo-beta-lactamase superfamily MY9_1829 SM00382 ATPases associated with a variety of cellular activities MY9_1829 SM00843 MY9_1829 MY9_1830 SM00345 helix_turn_helix gluconate operon transcriptional repressor MY9_1830 SM00866 MY9_1830 MY9_1837 SM00530 Helix-turn-helix XRE-family like proteins MY9_1839 SM00852 Probable molybdopterin binding domain MY9_1840 SM00382 ATPases associated with a variety of cellular activities MY9_1842 SM00322 K homology RNA-binding domain MY9_1842 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MY9_1845 SM00829 Enoylreductase MY9_1847 SM00729 Elongator protein 3, MiaB family, Radical SAM MY9_1850 SM00533 DNA-binding domain of DNA mismatch repair MUTS family MY9_1850 SM00534 ATPase domain of DNA mismatch repair MUTS family MY9_1851 SM00853 MutL C terminal dimerisation domain MY9_1851 SM01340 MY9_1851 MY9_1859 SM00849 Metallo-beta-lactamase superfamily MY9_1860 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. MY9_1861 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. MY9_1862 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. MY9_1864 SM00825 Beta-ketoacyl synthase MY9_1868 SM00822 MY9_1868 MY9_1868 SM00823 Phosphopantetheine attachment site MY9_1868 SM00825 Beta-ketoacyl synthase MY9_1868 SM00826 MY9_1868 MY9_1868 SM01294 MY9_1868 MY9_1869 SM00822 MY9_1869 MY9_1869 SM00823 Phosphopantetheine attachment site MY9_1869 SM00825 Beta-ketoacyl synthase MY9_1869 SM00826 MY9_1869 MY9_1869 SM01294 MY9_1869 MY9_1870 SM00822 MY9_1870 MY9_1870 SM00823 Phosphopantetheine attachment site MY9_1870 SM00825 Beta-ketoacyl synthase MY9_1870 SM00826 MY9_1870 MY9_1870 SM01294 MY9_1870 MY9_1871 SM00822 MY9_1871 MY9_1871 SM00823 Phosphopantetheine attachment site MY9_1871 SM00825 Beta-ketoacyl synthase MY9_1871 SM00826 MY9_1871 MY9_1871 SM01294 MY9_1871 MY9_1872 SM00823 Phosphopantetheine attachment site MY9_1872 SM00825 Beta-ketoacyl synthase MY9_1872 SM01294 MY9_1872 MY9_1875 SM00849 Metallo-beta-lactamase superfamily MY9_1892 SM00646 MY9_1892 MY9_1896 SM00382 ATPases associated with a variety of cellular activities MY9_1899 SM00422 helix_turn_helix, mercury resistance MY9_1900 SM01230 MY9_1900 MY9_1906 SM00860 SMI1 / KNR4 family MY9_1909 SM00028 Tetratricopeptide repeats MY9_1920 SM00318 Staphylococcal nuclease homologues MY9_1922 SM01005 Alanine racemase, C-terminal domain MY9_1951 SM00257 Lysin motif MY9_1952 SM00857 Resolvase, N terminal domain MY9_1954 SM00861 Transketolase, pyrimidine binding domain MY9_1959 SM00448 cheY-homologous receiver domain MY9_1973 SM01207 MY9_1973 MY9_1974 SM00881 CoA binding domain MY9_1975 SM00387 Histidine kinase-like ATPases MY9_1975 SM00433 TopoisomeraseII MY9_1976 SM00434 DNA Topoisomerase IV MY9_1980 SM01067 Cellulose binding domain MY9_1983 SM00606 Cellulose Binding Domain Type IV MY9_1992 SM00878 Biotin carboxylase C-terminal domain MY9_1999 SM00823 Phosphopantetheine attachment site MY9_1999 SM00824 Thioesterase MY9_2000 SM00823 Phosphopantetheine attachment site MY9_2001 SM00823 Phosphopantetheine attachment site MY9_2001 SM01294 MY9_2001 MY9_2002 SM00823 Phosphopantetheine attachment site MY9_2003 SM00823 Phosphopantetheine attachment site MY9_2013 SM00829 Enoylreductase MY9_2017 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase MY9_2026 SM00926 Molybdopterin oxidoreductase Fe4S4 domain MY9_2033 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MY9_2033 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MY9_2037 SM00656 MY9_2037 MY9_2041 SM00835 Cupin MY9_2048 SM00530 Helix-turn-helix XRE-family like proteins MY9_2058 SM00860 SMI1 / KNR4 family MY9_2080 SM00822 MY9_2080 MY9_2085 SM00342 helix_turn_helix, arabinose operon control protein MY9_2088 SM00849 Metallo-beta-lactamase superfamily MY9_2089 SM00871 Bacterial transcription activator, effector binding domain MY9_2092 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MY9_2100 SM00421 helix_turn_helix, Lux Regulon MY9_2100 SM00448 cheY-homologous receiver domain MY9_2102 SM00257 Lysin motif MY9_2103 SM00341 Helicase and RNase D C-terminal MY9_2103 SM00487 DEAD-like helicases superfamily MY9_2103 SM00490 helicase superfamily c-terminal domain MY9_2103 SM00956 MY9_2103 MY9_2119 SM00861 Transketolase, pyrimidine binding domain MY9_2120 SM00327 von Willebrand factor (vWF) type A domain MY9_2121 SM00382 ATPases associated with a variety of cellular activities MY9_2123 SM00257 Lysin motif MY9_2144 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MY9_2144 SM00245 tail specific protease MY9_2160 SM00882 Coenzyme A transferase MY9_2161 SM00882 Coenzyme A transferase MY9_2174 SM00347 helix_turn_helix multiple antibiotic resistance protein MY9_2182 SM00382 ATPases associated with a variety of cellular activities MY9_2190 SM00567 E-Z type HEAT repeats MY9_2190 SM00932 Scaffold protein Nfu/NifU N terminal MY9_2191 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MY9_2196 SM00357 Cold shock protein domain MY9_2204 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs MY9_2204 SM00475 5'-3' exonuclease MY9_2216 SM00354 helix_turn _helix lactose operon repressor MY9_2219 SM00491 MY9_2219 MY9_2221 SM00981 MY9_2221 MY9_2227 SM00487 DEAD-like helicases superfamily MY9_2227 SM00490 helicase superfamily c-terminal domain MY9_2239 SM00478 endonuclease III MY9_2239 SM00525 MY9_2239 MY9_2245 SM00479 MY9_2245 MY9_2245 SM00487 DEAD-like helicases superfamily MY9_2245 SM00491 MY9_2245 MY9_2253 SM00851 MGS-like domain MY9_2263 SM00914 MY9_2263 MY9_2264 SM00028 Tetratricopeptide repeats MY9_2278 SM00138 Methyltransferase, chemotaxis proteins MY9_2280 SM00562 MY9_2280 MY9_2287 SM00411 bacterial (prokaryotic) histone like domain MY9_2297 SM01240 MY9_2297 MY9_2298 SM00316 Ribosomal protein S1-like RNA-binding domain MY9_2306 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MY9_2311 SM00257 Lysin motif MY9_2313 SM00487 DEAD-like helicases superfamily MY9_2313 SM00490 helicase superfamily c-terminal domain MY9_2323 SM00091 PAS domain MY9_2323 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MY9_2323 SM00387 Histidine kinase-like ATPases MY9_2323 SM00388 His Kinase A (phosphoacceptor) domain MY9_2324 SM00448 cheY-homologous receiver domain MY9_2324 SM00862 Transcriptional regulatory protein, C terminal MY9_2329 SM00363 S4 RNA-binding domain MY9_2332 SM00936 Penicillin-binding protein 5, C-terminal domain MY9_2361 SM00387 Histidine kinase-like ATPases MY9_2363 SM00936 Penicillin-binding protein 5, C-terminal domain MY9_2371 SM00919 Malic enzyme, NAD binding domain MY9_2371 SM01274 MY9_2371 MY9_2374 SM00870 MY9_2374 MY9_2375 SM00530 Helix-turn-helix XRE-family like proteins MY9_2397 SM00849 Metallo-beta-lactamase superfamily MY9_2405 SM01350 MY9_2405 MY9_2415 SM00382 ATPases associated with a variety of cellular activities MY9_2417 SM00062 Bacterial periplasmic substrate-binding proteins MY9_2417 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. MY9_2419 SM00046 Diacylglycerol kinase catalytic domain (presumed) MY9_2421 SM00422 helix_turn_helix, mercury resistance MY9_2426 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MY9_2428 SM00091 PAS domain MY9_2428 SM00382 ATPases associated with a variety of cellular activities MY9_2437 SM00646 MY9_2437 MY9_2443 SM00448 cheY-homologous receiver domain MY9_2444 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MY9_2447 SM00363 S4 RNA-binding domain MY9_2448 SM00861 Transketolase, pyrimidine binding domain MY9_2456 SM00878 Biotin carboxylase C-terminal domain MY9_2465 SM00382 ATPases associated with a variety of cellular activities MY9_2467 SM00841 Elongation factor P, C-terminal MY9_2467 SM01185 MY9_2467 MY9_2474 SM00529 Helix-turn-helix diphteria tox regulatory element MY9_2476 SM00450 Rhodanese Homology Domain MY9_2480 SM00487 DEAD-like helicases superfamily MY9_2480 SM00490 helicase superfamily c-terminal domain MY9_2483 SM00530 Helix-turn-helix XRE-family like proteins MY9_2495 SM00382 ATPases associated with a variety of cellular activities MY9_2497 SM00116 Domain in cystathionine beta-synthase and other proteins. MY9_2499 SM01091 Transporter associated domain MY9_2503 SM00849 Metallo-beta-lactamase superfamily MY9_2507 SM00631 MY9_2507 MY9_2511 SM00028 Tetratricopeptide repeats MY9_2519 SM00382 ATPases associated with a variety of cellular activities MY9_2520 SM00382 ATPases associated with a variety of cellular activities MY9_2529 SM00257 Lysin motif MY9_2536 SM00518 AP endonuclease family 2 MY9_2537 SM00487 DEAD-like helicases superfamily MY9_2537 SM00490 helicase superfamily c-terminal domain MY9_2545 SM00400 zinc finger MY9_2545 SM00493 MY9_2545 MY9_2548 SM00116 Domain in cystathionine beta-synthase and other proteins. MY9_2557 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MY9_2567 SM00729 Elongator protein 3, MiaB family, Radical SAM MY9_2570 SM00271 DnaJ molecular chaperone homology domain MY9_2575 SM00729 Elongator protein 3, MiaB family, Radical SAM MY9_2576 SM00838 Elongation factor G C-terminus MY9_2583 SM00849 Metallo-beta-lactamase superfamily MY9_2585 SM00278 Helix-hairpin-helix DNA-binding motif class 1 MY9_2589 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MY9_2591 SM01103 MY9_2591 MY9_2604 SM00530 Helix-turn-helix XRE-family like proteins MY9_2611 SM00028 Tetratricopeptide repeats MY9_2627 SM00450 Rhodanese Homology Domain MY9_2627 SM00849 Metallo-beta-lactamase superfamily MY9_2628 SM00450 Rhodanese Homology Domain MY9_2629 SM00450 Rhodanese Homology Domain MY9_2633 SM00422 helix_turn_helix, mercury resistance MY9_2637 SM01092 CO dehydrogenase flavoprotein C-terminal domain MY9_2638 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MY9_2660 SM00345 helix_turn_helix gluconate operon transcriptional repressor MY9_2660 SM00895 MY9_2660 MY9_2663 SM00822 MY9_2663 MY9_2664 SM00861 Transketolase, pyrimidine binding domain MY9_2667 SM00347 helix_turn_helix multiple antibiotic resistance protein MY9_2674 SM00287 Bacterial SH3 domain homologues MY9_2683 SM00640 Glycosyl hydrolases family 32 MY9_2688 SM00382 ATPases associated with a variety of cellular activities MY9_2709 SM00650 Ribosomal RNA adenine dimethylases MY9_2720 SM00732 Likely ribonuclease with RNase H fold. MY9_2722 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain MY9_2728 SM00382 ATPases associated with a variety of cellular activities MY9_2729 SM00028 Tetratricopeptide repeats MY9_2733 SM00382 ATPases associated with a variety of cellular activities MY9_2740 SM00287 Bacterial SH3 domain homologues MY9_2740 SM00646 MY9_2740 MY9_2742 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MY9_2742 SM00954 Region found in RelA / SpoT proteins MY9_2752 SM01323 MY9_2752 MY9_2756 SM00382 ATPases associated with a variety of cellular activities MY9_2757 SM00278 Helix-hairpin-helix DNA-binding motif class 1 MY9_2767 SM00257 Lysin motif MY9_2776 SM01317 MY9_2776 MY9_2796 SM00257 Lysin motif MY9_2798 SM01004 Delta-aminolevulinic acid dehydratase MY9_2805 SM00382 ATPases associated with a variety of cellular activities MY9_2805 SM00464 Found in ATP-dependent protease La (LON) MY9_2806 SM00382 ATPases associated with a variety of cellular activities MY9_2807 SM00382 ATPases associated with a variety of cellular activities MY9_2807 SM00994 ClpX C4-type zinc finger MY9_2807 SM01086 C-terminal, D2-small domain, of ClpB protein MY9_2813 SM01329 MY9_2813 MY9_2814 SM00917 LeuA allosteric (dimerisation) domain MY9_2828 SM00909 Sporulation and spore germination MY9_2831 SM00347 helix_turn_helix multiple antibiotic resistance protein MY9_2832 SM00421 helix_turn_helix, Lux Regulon MY9_2839 SM00465 GIY-YIG type nucleases (URI domain) MY9_2841 SM00813 Alpha-L-arabinofuranosidase C-terminus MY9_2842 SM00893 Electron transfer flavoprotein domain MY9_2843 SM00893 Electron transfer flavoprotein domain MY9_2847 SM00463 Small MutS-related domain MY9_2847 SM00533 DNA-binding domain of DNA mismatch repair MUTS family MY9_2847 SM00534 ATPase domain of DNA mismatch repair MUTS family MY9_2848 SM00278 Helix-hairpin-helix DNA-binding motif class 1 MY9_2848 SM00481 DNA polymerase alpha chain like domain MY9_2848 SM00483 DNA polymerase X family MY9_2852 SM00873 B3/4 domain MY9_2852 SM00874 tRNA synthetase B5 domain MY9_2852 SM00896 Ferredoxin-fold anticodon binding domain MY9_2854 SM00967 RNA 2'-O ribose methyltransferase substrate binding MY9_2864 SM00813 Alpha-L-arabinofuranosidase C-terminus MY9_2870 SM01007 Class II Aldolase and Adducin N-terminal domain MY9_2883 SM00448 cheY-homologous receiver domain MY9_2883 SM00850 LytTr DNA-binding domain MY9_2884 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. MY9_2884 SM00387 Histidine kinase-like ATPases MY9_2886 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain MY9_2889 SM00382 ATPases associated with a variety of cellular activities MY9_2893 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MY9_2899 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain MY9_2899 SM01232 MY9_2899 MY9_2900 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs MY9_2900 SM00474 3'-5' exonuclease MY9_2900 SM00475 5'-3' exonuclease MY9_2900 SM00482 DNA polymerase A domain MY9_2901 SM00091 PAS domain MY9_2901 SM00387 Histidine kinase-like ATPases MY9_2901 SM00388 His Kinase A (phosphoacceptor) domain MY9_2902 SM00448 cheY-homologous receiver domain MY9_2902 SM00862 Transcriptional regulatory protein, C terminal MY9_2905 SM01329 MY9_2905 MY9_2916 SM00919 Malic enzyme, NAD binding domain MY9_2916 SM01274 MY9_2916 MY9_2917 SM00481 DNA polymerase alpha chain like domain MY9_2925 SM00116 Domain in cystathionine beta-synthase and other proteins. MY9_2928 SM00904 Riboflavin kinase MY9_2932 SM00382 ATPases associated with a variety of cellular activities MY9_2935 SM00062 Bacterial periplasmic substrate-binding proteins MY9_2936 SM00062 Bacterial periplasmic substrate-binding proteins MY9_2939 SM00849 Metallo-beta-lactamase superfamily MY9_2944 SM00852 Probable molybdopterin binding domain MY9_2958 SM00981 MY9_2958 MY9_2964 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. MY9_2965 SM00267 diguanylate cyclase MY9_2967 SM00363 S4 RNA-binding domain MY9_2967 SM01390 MY9_2967 MY9_2969 SM00363 S4 RNA-binding domain MY9_2973 SM00116 Domain in cystathionine beta-synthase and other proteins. MY9_2977 SM00354 helix_turn _helix lactose operon repressor MY9_2978 SM00830 Chorismate mutase type II MY9_2983 SM00382 ATPases associated with a variety of cellular activities MY9_2983 SM00843 MY9_2983 MY9_2991 SM00919 Malic enzyme, NAD binding domain MY9_2991 SM01274 MY9_2991 MY9_2992 SM00849 Metallo-beta-lactamase superfamily MY9_2996 SM00642 Alpha-amylase domain MY9_2997 SM00046 Diacylglycerol kinase catalytic domain (presumed) MY9_3004 SM00382 ATPases associated with a variety of cellular activities MY9_3005 SM00420 helix_turn_helix, Deoxyribose operon repressor MY9_3006 SM00363 S4 RNA-binding domain MY9_3016 SM00342 helix_turn_helix, arabinose operon control protein MY9_3020 SM00729 Elongator protein 3, MiaB family, Radical SAM MY9_3020 SM00876 Biotin and Thiamin Synthesis associated domain MY9_3027 SM00354 helix_turn _helix lactose operon repressor MY9_3032 SM00450 Rhodanese Homology Domain MY9_3036 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MY9_3036 SM00091 PAS domain MY9_3040 SM00382 ATPases associated with a variety of cellular activities MY9_3041 SM00387 Histidine kinase-like ATPases MY9_3042 SM00448 cheY-homologous receiver domain MY9_3042 SM00862 Transcriptional regulatory protein, C terminal MY9_3044 SM00382 ATPases associated with a variety of cellular activities MY9_3047 SM00382 ATPases associated with a variety of cellular activities MY9_3048 SM00345 helix_turn_helix gluconate operon transcriptional repressor MY9_3051 SM00729 Elongator protein 3, MiaB family, Radical SAM MY9_3063 SM00382 ATPases associated with a variety of cellular activities MY9_3072 SM01234 MY9_3072 MY9_3073 SM00947 Carbonic anhydrase MY9_3080 SM00382 ATPases associated with a variety of cellular activities MY9_3082 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MY9_3092 SM00984 UDP binding domain MY9_3104 SM00642 Alpha-amylase domain MY9_3108 SM00244 prohibitin homologues MY9_3119 SM00047 Lysozyme subfamily 2 MY9_3129 SM00420 helix_turn_helix, Deoxyribose operon repressor MY9_3129 SM01134 MY9_3129 MY9_3130 SM01007 Class II Aldolase and Adducin N-terminal domain MY9_3131 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MY9_3131 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MY9_3131 SM00319 Homologues of the ligand binding domain of Tar MY9_3132 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MY9_3132 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MY9_3132 SM00319 Homologues of the ligand binding domain of Tar MY9_3133 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MY9_3133 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MY9_3133 SM00319 Homologues of the ligand binding domain of Tar MY9_3134 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MY9_3134 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MY9_3134 SM00319 Homologues of the ligand binding domain of Tar MY9_3138 SM00642 Alpha-amylase domain MY9_3139 SM01091 Transporter associated domain MY9_3150 SM00316 Ribosomal protein S1-like RNA-binding domain MY9_3152 SM00344 helix_turn_helix ASNC type MY9_3156 SM00387 Histidine kinase-like ATPases MY9_3156 SM00388 His Kinase A (phosphoacceptor) domain MY9_3157 SM01298 MY9_3157 MY9_3158 SM00479 MY9_3158 MY9_3164 SM00091 PAS domain MY9_3164 SM00387 Histidine kinase-like ATPases MY9_3165 SM00448 cheY-homologous receiver domain MY9_3167 SM00382 ATPases associated with a variety of cellular activities MY9_3180 SM00421 helix_turn_helix, Lux Regulon MY9_3180 SM00448 cheY-homologous receiver domain MY9_3181 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MY9_3181 SM00387 Histidine kinase-like ATPases MY9_3186 SM00052 Putative diguanylate phosphodiesterase MY9_3197 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MY9_3205 SM01002 Alanine dehydrogenase/PNT, C-terminal domain MY9_3205 SM01003 Alanine dehydrogenase/PNT, N-terminal domain MY9_3207 SM00923 MbtH-like protein MY9_3208 SM00823 Phosphopantetheine attachment site MY9_3208 SM00824 Thioesterase MY9_3225 SM01240 MY9_3225 MY9_3246 SM00729 Elongator protein 3, MiaB family, Radical SAM MY9_3276 SM00862 Transcriptional regulatory protein, C terminal MY9_3277 SM00382 ATPases associated with a variety of cellular activities MY9_3281 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MY9_3290 SM00382 ATPases associated with a variety of cellular activities MY9_3291 SM00345 helix_turn_helix gluconate operon transcriptional repressor MY9_3291 SM00866 MY9_3291 MY9_3297 SM00465 GIY-YIG type nucleases (URI domain) MY9_3306 SM00382 ATPases associated with a variety of cellular activities MY9_3313 SM00382 ATPases associated with a variety of cellular activities MY9_3313 SM00930 MY9_3313 MY9_3316 SM00493 MY9_3316 MY9_3327 SM00347 helix_turn_helix multiple antibiotic resistance protein MY9_3333 SM00382 ATPases associated with a variety of cellular activities MY9_3338 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MY9_3339 SM00448 cheY-homologous receiver domain MY9_3339 SM00862 Transcriptional regulatory protein, C terminal MY9_3340 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MY9_3340 SM00387 Histidine kinase-like ATPases MY9_3340 SM00388 His Kinase A (phosphoacceptor) domain MY9_3348 SM00421 helix_turn_helix, Lux Regulon MY9_3348 SM00448 cheY-homologous receiver domain MY9_3349 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MY9_3349 SM00387 Histidine kinase-like ATPases MY9_3357 SM00382 ATPases associated with a variety of cellular activities MY9_3363 SM00387 Histidine kinase-like ATPases MY9_3363 SM00388 His Kinase A (phosphoacceptor) domain MY9_3364 SM00448 cheY-homologous receiver domain MY9_3364 SM00862 Transcriptional regulatory protein, C terminal MY9_3369 SM00835 Cupin MY9_3372 SM00382 ATPases associated with a variety of cellular activities MY9_3374 SM00382 ATPases associated with a variety of cellular activities MY9_3409 SM00316 Ribosomal protein S1-like RNA-binding domain MY9_3409 SM00357 Cold shock protein domain MY9_3409 SM00955 MY9_3409 MY9_3413 SM00530 Helix-turn-helix XRE-family like proteins MY9_3414 SM00530 Helix-turn-helix XRE-family like proteins MY9_3415 SM00530 Helix-turn-helix XRE-family like proteins MY9_3417 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MY9_3417 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MY9_3421 SM00116 Domain in cystathionine beta-synthase and other proteins. MY9_3421 SM00382 ATPases associated with a variety of cellular activities MY9_3426 SM00116 Domain in cystathionine beta-synthase and other proteins. MY9_3426 SM00382 ATPases associated with a variety of cellular activities MY9_3433 SM01192 MY9_3433 MY9_3433 SM01193 MY9_3433 MY9_3439 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MY9_3442 SM00345 helix_turn_helix gluconate operon transcriptional repressor MY9_3447 SM00636 MY9_3447 MY9_3451 SM00421 helix_turn_helix, Lux Regulon MY9_3451 SM00448 cheY-homologous receiver domain MY9_3454 SM00382 ATPases associated with a variety of cellular activities MY9_3456 SM00331 Sigma factor PP2C-like phosphatases MY9_3462 SM00354 helix_turn _helix lactose operon repressor MY9_3463 SM00345 helix_turn_helix gluconate operon transcriptional repressor MY9_3463 SM00895 MY9_3463 MY9_3482 SM00530 Helix-turn-helix XRE-family like proteins MY9_3490 SM00640 Glycosyl hydrolases family 32 MY9_3499 SM00642 Alpha-amylase domain MY9_3504 SM00642 Alpha-amylase domain MY9_3505 SM00354 helix_turn _helix lactose operon repressor MY9_3509 SM00947 Carbonic anhydrase MY9_3512 SM00382 ATPases associated with a variety of cellular activities MY9_3513 SM00387 Histidine kinase-like ATPases MY9_3513 SM00388 His Kinase A (phosphoacceptor) domain MY9_3514 SM00448 cheY-homologous receiver domain MY9_3514 SM00862 Transcriptional regulatory protein, C terminal MY9_3524 SM00028 Tetratricopeptide repeats MY9_3525 SM00382 ATPases associated with a variety of cellular activities MY9_3552 SM00345 helix_turn_helix gluconate operon transcriptional repressor MY9_3552 SM00866 MY9_3552 MY9_3560 SM00382 ATPases associated with a variety of cellular activities MY9_3561 SM00487 DEAD-like helicases superfamily MY9_3561 SM00490 helicase superfamily c-terminal domain MY9_3568 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MY9_3570 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MY9_3570 SM00245 tail specific protease MY9_3572 SM00382 ATPases associated with a variety of cellular activities MY9_3575 SM00937 MY9_3575 MY9_3577 SM00957 SecA DEAD-like domain MY9_3577 SM00958 SecA preprotein cross-linking domain MY9_3596 SM00487 DEAD-like helicases superfamily MY9_3596 SM00490 helicase superfamily c-terminal domain MY9_3598 SM00421 helix_turn_helix, Lux Regulon MY9_3598 SM00448 cheY-homologous receiver domain MY9_3599 SM00387 Histidine kinase-like ATPases MY9_3607 SM00984 UDP binding domain MY9_3612 SM00646 MY9_3612 MY9_3621 SM00382 ATPases associated with a variety of cellular activities MY9_3634 SM00047 Lysozyme subfamily 2 MY9_3634 SM00287 Bacterial SH3 domain homologues MY9_3645 SM00854 Bacterial capsule synthesis protein PGA_cap MY9_3649 SM00354 helix_turn _helix lactose operon repressor MY9_3652 SM00382 ATPases associated with a variety of cellular activities MY9_3655 SM00287 Bacterial SH3 domain homologues MY9_3667 SM00903 Flavin reductase like domain MY9_3670 SM00344 helix_turn_helix ASNC type MY9_3688 SM00984 UDP binding domain MY9_3694 SM00487 DEAD-like helicases superfamily MY9_3694 SM00490 helicase superfamily c-terminal domain MY9_3696 SM00420 helix_turn_helix, Deoxyribose operon repressor MY9_3696 SM01134 MY9_3696 MY9_3702 SM00448 cheY-homologous receiver domain MY9_3702 SM00862 Transcriptional regulatory protein, C terminal MY9_3703 SM00387 Histidine kinase-like ATPases MY9_3703 SM00388 His Kinase A (phosphoacceptor) domain MY9_3703 SM00448 cheY-homologous receiver domain MY9_3706 SM00028 Tetratricopeptide repeats MY9_3711 SM00347 helix_turn_helix multiple antibiotic resistance protein MY9_3714 SM00710 Parallel beta-helix repeats MY9_3714 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses MY9_3721 SM00938 Nitrogen regulatory protein P-II MY9_3722 SM00014 Acid phosphatase homologues MY9_3730 SM00155 Phospholipase D. Active site motifs. MY9_3731 SM00422 helix_turn_helix, mercury resistance MY9_3738 SM00382 ATPases associated with a variety of cellular activities MY9_3739 SM00382 ATPases associated with a variety of cellular activities MY9_3747 SM00028 Tetratricopeptide repeats MY9_3749 SM00729 Elongator protein 3, MiaB family, Radical SAM MY9_3753 SM00327 von Willebrand factor (vWF) type A domain MY9_3754 SM00327 von Willebrand factor (vWF) type A domain MY9_3762 SM00382 ATPases associated with a variety of cellular activities MY9_3775 SM00226 Low molecular weight phosphatase family MY9_3783 SM00937 MY9_3783 MY9_3787 SM00919 Malic enzyme, NAD binding domain MY9_3787 SM01274 MY9_3787 MY9_3790 SM00357 Cold shock protein domain MY9_3790 SM00382 ATPases associated with a variety of cellular activities MY9_3790 SM00959 Rho termination factor, N-terminal domain MY9_3796 SM00448 cheY-homologous receiver domain MY9_3803 SM00155 Phospholipase D. Active site motifs. MY9_3807 SM00382 ATPases associated with a variety of cellular activities MY9_3808 SM00155 Phospholipase D. Active site motifs. MY9_3813 SM00926 Molybdopterin oxidoreductase Fe4S4 domain MY9_3817 SM00100 Cyclic nucleotide-monophosphate binding domain MY9_3817 SM00419 helix_turn_helix, cAMP Regulatory protein MY9_3819 SM00836 DALR anticodon binding domain MY9_3819 SM01016 Arginyl tRNA synthetase N terminal dom MY9_3822 SM00729 Elongator protein 3, MiaB family, Radical SAM MY9_3832 SM00028 Tetratricopeptide repeats MY9_3841 SM00347 helix_turn_helix multiple antibiotic resistance protein MY9_3842 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain MY9_3848 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MY9_3871 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MY9_3879 SM00858 MY9_3879 MY9_3892 SM00986 Uracil DNA glycosylase superfamily MY9_3892 SM00987 UreE urease accessory protein, C-terminal domain MY9_3896 SM00640 Glycosyl hydrolases family 32 MY9_3899 SM01061 CAT RNA binding domain MY9_3929 SM00382 ATPases associated with a variety of cellular activities MY9_3938 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase MY9_3947 SM01061 CAT RNA binding domain MY9_3950 SM00347 helix_turn_helix multiple antibiotic resistance protein MY9_3951 SM00363 S4 RNA-binding domain MY9_3953 SM00530 Helix-turn-helix XRE-family like proteins MY9_3956 SM00954 Region found in RelA / SpoT proteins MY9_3976 SM01060 MY9_3976 MY9_3979 SM00382 ATPases associated with a variety of cellular activities MY9_3987 SM00382 ATPases associated with a variety of cellular activities MY9_3988 SM00382 ATPases associated with a variety of cellular activities MY9_3997 SM00382 ATPases associated with a variety of cellular activities MY9_4005 SM00387 Histidine kinase-like ATPases MY9_4006 SM00421 helix_turn_helix, Lux Regulon MY9_4006 SM00448 cheY-homologous receiver domain MY9_4014 SM00882 Coenzyme A transferase MY9_4015 SM00882 Coenzyme A transferase MY9_4023 SM01060 MY9_4023 MY9_4027 SM01061 CAT RNA binding domain MY9_4031 SM00487 DEAD-like helicases superfamily MY9_4031 SM00490 helicase superfamily c-terminal domain MY9_4067 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain MY9_4069 SM01133 MY9_4069 MY9_4077 SM00382 ATPases associated with a variety of cellular activities MY9_4079 SM00062 Bacterial periplasmic substrate-binding proteins MY9_4095 SM00382 ATPases associated with a variety of cellular activities MY9_4096 SM00387 Histidine kinase-like ATPases MY9_4097 SM00448 cheY-homologous receiver domain MY9_4097 SM00862 Transcriptional regulatory protein, C terminal MY9_4108 SM00420 helix_turn_helix, Deoxyribose operon repressor MY9_4108 SM01134 MY9_4108 MY9_4117 SM00387 Histidine kinase-like ATPases MY9_4124 SM00564 beta-propeller repeat MY9_4131 SM00347 helix_turn_helix multiple antibiotic resistance protein MY9_4141 SM00345 helix_turn_helix gluconate operon transcriptional repressor MY9_4141 SM00895 MY9_4141 MY9_4144 SM01350 MY9_4144 MY9_4153 SM00487 DEAD-like helicases superfamily MY9_4170 SM00091 PAS domain MY9_4170 SM00382 ATPases associated with a variety of cellular activities MY9_4171 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MY9_4171 SM00387 Histidine kinase-like ATPases MY9_4171 SM00388 His Kinase A (phosphoacceptor) domain MY9_4172 SM00448 cheY-homologous receiver domain MY9_4172 SM00862 Transcriptional regulatory protein, C terminal MY9_4175 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MY9_4176 SM00849 Metallo-beta-lactamase superfamily MY9_4179 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MY9_4179 SM00091 PAS domain MY9_4179 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MY9_4179 SM00387 Histidine kinase-like ATPases MY9_4179 SM00388 His Kinase A (phosphoacceptor) domain MY9_4180 SM00448 cheY-homologous receiver domain MY9_4180 SM00862 Transcriptional regulatory protein, C terminal MY9_4181 SM00788 Adenylosuccinate synthetase MY9_4183 SM00382 ATPases associated with a variety of cellular activities MY9_4192 SM00267 diguanylate cyclase MY9_4197 SM01131 MY9_4197 MY9_4213 SM00849 Metallo-beta-lactamase superfamily MY9_4214 SM00347 helix_turn_helix multiple antibiotic resistance protein MY9_4220 SM00422 helix_turn_helix, mercury resistance MY9_4225 SM01266 MY9_4225 MY9_4227 SM00354 helix_turn _helix lactose operon repressor MY9_4234 SM00926 Molybdopterin oxidoreductase Fe4S4 domain MY9_4239 SM00470 ParB-like nuclease domain MY9_4242 SM00470 ParB-like nuclease domain MY9_4244 SM01228 MY9_4244 MY9_4246 SM00393 Putative single-stranded nucleic acids-binding domain MY9_4246 SM01245 MY9_4246