BsLM_0001 SM00382 ATPases associated with a variety of cellular activities BsLM_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain BsLM_0002 SM00480 DNA polymerase III beta subunit BsLM_0006 SM00387 Histidine kinase-like ATPases BsLM_0006 SM00433 TopoisomeraseII BsLM_0008 SM00434 DNA Topoisomerase IV BsLM_0011 SM00116 Domain in cystathionine beta-synthase and other proteins. BsLM_0011 SM01240 BsLM_0011 BsLM_0012 SM00936 Penicillin-binding protein 5, C-terminal domain BsLM_0019 SM00257 Lysin motif BsLM_0019 SM00636 BsLM_0019 BsLM_0022 SM00382 ATPases associated with a variety of cellular activities BsLM_0024 SM00493 BsLM_0024 BsLM_0039 SM00465 GIY-YIG type nucleases (URI domain) BsLM_0041 SM00966 SpoVT / AbrB like domain BsLM_0044 SM01208 BsLM_0044 BsLM_0045 SM00493 BsLM_0045 BsLM_0046 SM00650 Ribosomal RNA adenine dimethylases BsLM_0056 SM01400 BsLM_0056 BsLM_0060 SM00487 DEAD-like helicases superfamily BsLM_0060 SM00490 helicase superfamily c-terminal domain BsLM_0060 SM00982 BsLM_0060 BsLM_0060 SM01058 CarD-like/TRCF domain BsLM_0061 SM00966 SpoVT / AbrB like domain BsLM_0064 SM00363 S4 RNA-binding domain BsLM_0068 SM00316 Ribosomal protein S1-like RNA-binding domain BsLM_0069 SM00331 Sigma factor PP2C-like phosphatases BsLM_0069 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BsLM_0071 SM00220 Serine/Threonine protein kinases, catalytic domain BsLM_0072 SM00977 TilS substrate C-terminal domain BsLM_0074 SM00382 ATPases associated with a variety of cellular activities BsLM_0083 SM00905 Dihydroneopterin aldolase BsLM_0085 SM00530 Helix-turn-helix XRE-family like proteins BsLM_0094 SM00382 ATPases associated with a variety of cellular activities BsLM_0094 SM01086 C-terminal, D2-small domain, of ClpB protein BsLM_0095 SM00382 ATPases associated with a variety of cellular activities BsLM_0097 SM00670 Large family of predicted nucleotide-binding domains BsLM_0102 SM00840 BsLM_0102 BsLM_0103 SM00535 Ribonuclease III family BsLM_0104 SM00967 RNA 2'-O ribose methyltransferase substrate binding BsLM_0108 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BsLM_0108 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BsLM_0109 SM00649 Ribosomal protein L11/L12 BsLM_0115 SM00663 RNA polymerase I subunit A N-terminus BsLM_0118 SM00838 Elongation factor G C-terminus BsLM_0118 SM00889 Elongation factor G, domain IV BsLM_0121 SM01403 BsLM_0121 BsLM_0125 SM01382 BsLM_0125 BsLM_0125 SM01383 BsLM_0125 BsLM_0127 SM00322 K homology RNA-binding domain BsLM_0131 SM01374 BsLM_0131 BsLM_0132 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BsLM_0147 SM00662 RNA polymerases D BsLM_0149 SM00382 ATPases associated with a variety of cellular activities BsLM_0150 SM00382 ATPases associated with a variety of cellular activities BsLM_0157 SM00646 BsLM_0157 BsLM_0160 SM01251 BsLM_0160 BsLM_0174 SM00342 helix_turn_helix, arabinose operon control protein BsLM_0190 SM00478 endonuclease III BsLM_0191 SM00342 helix_turn_helix, arabinose operon control protein BsLM_0199 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BsLM_0204 SM00448 cheY-homologous receiver domain BsLM_0204 SM00862 Transcriptional regulatory protein, C terminal BsLM_0205 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BsLM_0205 SM00388 His Kinase A (phosphoacceptor) domain BsLM_0220 SM00347 helix_turn_helix multiple antibiotic resistance protein BsLM_0227 SM00342 helix_turn_helix, arabinose operon control protein BsLM_0237 SM00450 Rhodanese Homology Domain BsLM_0241 SM00345 helix_turn_helix gluconate operon transcriptional repressor BsLM_0241 SM00866 BsLM_0241 BsLM_0250 SM00387 Histidine kinase-like ATPases BsLM_0251 SM00448 cheY-homologous receiver domain BsLM_0252 SM01130 BsLM_0252 BsLM_0255 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BsLM_0256 SM00345 helix_turn_helix gluconate operon transcriptional repressor BsLM_0256 SM00895 BsLM_0256 BsLM_0257 SM00858 BsLM_0257 BsLM_0263 SM00448 cheY-homologous receiver domain BsLM_0263 SM00862 Transcriptional regulatory protein, C terminal BsLM_0264 SM00387 Histidine kinase-like ATPases BsLM_0264 SM00388 His Kinase A (phosphoacceptor) domain BsLM_0265 SM00382 ATPases associated with a variety of cellular activities BsLM_0271 SM00327 von Willebrand factor (vWF) type A domain BsLM_0280 SM00870 BsLM_0280 BsLM_0284 SM00387 Histidine kinase-like ATPases BsLM_0285 SM00448 cheY-homologous receiver domain BsLM_0285 SM00850 LytTr DNA-binding domain BsLM_0286 SM00382 ATPases associated with a variety of cellular activities BsLM_0294 SM00028 Tetratricopeptide repeats BsLM_0296 SM00642 Alpha-amylase domain BsLM_0298 SM00382 ATPases associated with a variety of cellular activities BsLM_0309 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BsLM_0310 SM00116 Domain in cystathionine beta-synthase and other proteins. BsLM_0310 SM00382 ATPases associated with a variety of cellular activities BsLM_0316 SM00632 BsLM_0316 BsLM_0316 SM00642 Alpha-amylase domain BsLM_0321 SM00347 helix_turn_helix multiple antibiotic resistance protein BsLM_0344 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BsLM_0349 SM00833 Cobalamin synthesis protein cobW C-terminal domain BsLM_0351 SM00062 Bacterial periplasmic substrate-binding proteins BsLM_0354 SM00347 helix_turn_helix multiple antibiotic resistance protein BsLM_0356 SM00382 ATPases associated with a variety of cellular activities BsLM_0360 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BsLM_0360 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BsLM_0362 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BsLM_0365 SM00823 Phosphopantetheine attachment site BsLM_0365 SM01294 BsLM_0365 BsLM_0366 SM00823 Phosphopantetheine attachment site BsLM_0366 SM01294 BsLM_0366 BsLM_0367 SM00823 Phosphopantetheine attachment site BsLM_0372 SM00345 helix_turn_helix gluconate operon transcriptional repressor BsLM_0375 SM00382 ATPases associated with a variety of cellular activities BsLM_0377 SM00062 Bacterial periplasmic substrate-binding proteins BsLM_0385 SM00710 Parallel beta-helix repeats BsLM_0385 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses BsLM_0390 SM00382 ATPases associated with a variety of cellular activities BsLM_0392 SM00448 cheY-homologous receiver domain BsLM_0392 SM00862 Transcriptional regulatory protein, C terminal BsLM_0393 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BsLM_0393 SM00387 Histidine kinase-like ATPases BsLM_0393 SM00388 His Kinase A (phosphoacceptor) domain BsLM_0395 SM00028 Tetratricopeptide repeats BsLM_0403 SM00382 ATPases associated with a variety of cellular activities BsLM_0409 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BsLM_0410 SM00345 helix_turn_helix gluconate operon transcriptional repressor BsLM_0417 SM00420 helix_turn_helix, Deoxyribose operon repressor BsLM_0422 SM01329 BsLM_0422 BsLM_0431 SM00796 Allophanate hydrolase subunit 1 BsLM_0432 SM00797 Allophanate hydrolase subunit 2 BsLM_0433 SM00346 helix_turn_helix isocitrate lyase regulation BsLM_0449 SM00344 helix_turn_helix ASNC type BsLM_0450 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BsLM_0450 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BsLM_0450 SM00493 BsLM_0450 BsLM_0452 SM00267 diguanylate cyclase BsLM_0470 SM00091 PAS domain BsLM_0470 SM00387 Histidine kinase-like ATPases BsLM_0471 SM00448 cheY-homologous receiver domain BsLM_0474 SM00382 ATPases associated with a variety of cellular activities BsLM_0484 SM00487 DEAD-like helicases superfamily BsLM_0484 SM00490 helicase superfamily c-terminal domain BsLM_0490 SM01005 Alanine racemase, C-terminal domain BsLM_0495 SM00387 Histidine kinase-like ATPases BsLM_0496 SM00331 Sigma factor PP2C-like phosphatases BsLM_0500 SM00331 Sigma factor PP2C-like phosphatases BsLM_0500 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BsLM_0505 SM00347 helix_turn_helix multiple antibiotic resistance protein BsLM_0506 SM00316 Ribosomal protein S1-like RNA-binding domain BsLM_0506 SM00732 Likely ribonuclease with RNase H fold. BsLM_0508 SM00731 SprT homologues. BsLM_0512 SM00530 Helix-turn-helix XRE-family like proteins BsLM_0516 SM00357 Cold shock protein domain BsLM_0517 SM01058 CarD-like/TRCF domain BsLM_0520 SM00342 helix_turn_helix, arabinose operon control protein BsLM_0523 SM00342 helix_turn_helix, arabinose operon control protein BsLM_0523 SM00871 Bacterial transcription activator, effector binding domain BsLM_0524 SM00345 helix_turn_helix gluconate operon transcriptional repressor BsLM_0534 SM00345 helix_turn_helix gluconate operon transcriptional repressor BsLM_0545 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BsLM_0550 SM00345 helix_turn_helix gluconate operon transcriptional repressor BsLM_0552 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BsLM_0556 SM00387 Histidine kinase-like ATPases BsLM_0557 SM00421 helix_turn_helix, Lux Regulon BsLM_0557 SM00448 cheY-homologous receiver domain BsLM_0562 SM00422 helix_turn_helix, mercury resistance BsLM_0562 SM00871 Bacterial transcription activator, effector binding domain BsLM_0582 SM00354 helix_turn _helix lactose operon repressor BsLM_0585 SM00382 ATPases associated with a variety of cellular activities BsLM_0588 SM00347 helix_turn_helix multiple antibiotic resistance protein BsLM_0591 SM00347 helix_turn_helix multiple antibiotic resistance protein BsLM_0591 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BsLM_0595 SM00345 helix_turn_helix gluconate operon transcriptional repressor BsLM_0595 SM00895 BsLM_0595 BsLM_0596 SM00257 Lysin motif BsLM_0596 SM00636 BsLM_0596 BsLM_0599 SM00098 Alkaline phosphatase homologues BsLM_0603 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BsLM_0611 SM00345 helix_turn_helix gluconate operon transcriptional repressor BsLM_0611 SM00866 BsLM_0611 BsLM_0622 SM00382 ATPases associated with a variety of cellular activities BsLM_0624 SM00881 CoA binding domain BsLM_0629 SM00883 Chaperonin 10 Kd subunit BsLM_0640 SM00028 Tetratricopeptide repeats BsLM_0640 SM00382 ATPases associated with a variety of cellular activities BsLM_0641 SM00829 Enoylreductase BsLM_0651 SM00829 Enoylreductase BsLM_0663 SM00460 Transglutaminase/protease-like homologues BsLM_0673 SM01001 AIR carboxylase BsLM_0675 SM00998 Adenylosuccinate lyase C-terminus BsLM_0678 SM01211 BsLM_0678 BsLM_0683 SM00798 AICARFT/IMPCHase bienzyme BsLM_0683 SM00851 MGS-like domain BsLM_0684 SM01209 BsLM_0684 BsLM_0684 SM01210 BsLM_0684 BsLM_0685 SM00344 helix_turn_helix ASNC type BsLM_0694 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BsLM_0694 SM00292 breast cancer carboxy-terminal domain BsLM_0694 SM00532 Ligase N family BsLM_0701 SM00845 GatB domain BsLM_0704 SM00046 Diacylglycerol kinase catalytic domain (presumed) BsLM_0706 SM00487 DEAD-like helicases superfamily BsLM_0706 SM00490 helicase superfamily c-terminal domain BsLM_0710 SM00028 Tetratricopeptide repeats BsLM_0721 SM00028 Tetratricopeptide repeats BsLM_0734 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BsLM_0734 SM00387 Histidine kinase-like ATPases BsLM_0735 SM00342 helix_turn_helix, arabinose operon control protein BsLM_0735 SM00448 cheY-homologous receiver domain BsLM_0740 SM00342 helix_turn_helix, arabinose operon control protein BsLM_0761 SM00347 helix_turn_helix multiple antibiotic resistance protein BsLM_0776 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BsLM_0777 SM00382 ATPases associated with a variety of cellular activities BsLM_0779 SM00422 helix_turn_helix, mercury resistance BsLM_0782 SM00382 ATPases associated with a variety of cellular activities BsLM_0783 SM00487 DEAD-like helicases superfamily BsLM_0783 SM00490 helicase superfamily c-terminal domain BsLM_0785 SM00829 Enoylreductase BsLM_0786 SM00382 ATPases associated with a variety of cellular activities BsLM_0793 SM00656 BsLM_0793 BsLM_0795 SM00387 Histidine kinase-like ATPases BsLM_0796 SM00448 cheY-homologous receiver domain BsLM_0800 SM00849 Metallo-beta-lactamase superfamily BsLM_0815 SM00642 Alpha-amylase domain BsLM_0816 SM00345 helix_turn_helix gluconate operon transcriptional repressor BsLM_0816 SM00866 BsLM_0816 BsLM_0823 SM00226 Low molecular weight phosphatase family BsLM_0836 SM00478 endonuclease III BsLM_0843 SM00861 Transketolase, pyrimidine binding domain BsLM_0846 SM00382 ATPases associated with a variety of cellular activities BsLM_0857 SM00382 ATPases associated with a variety of cellular activities BsLM_0858 SM00382 ATPases associated with a variety of cellular activities BsLM_0861 SM00342 helix_turn_helix, arabinose operon control protein BsLM_0865 SM00387 Histidine kinase-like ATPases BsLM_0866 SM00421 helix_turn_helix, Lux Regulon BsLM_0866 SM00448 cheY-homologous receiver domain BsLM_0867 SM00382 ATPases associated with a variety of cellular activities BsLM_0877 SM00347 helix_turn_helix multiple antibiotic resistance protein BsLM_0892 SM00287 Bacterial SH3 domain homologues BsLM_0898 SM00478 endonuclease III BsLM_0898 SM00525 BsLM_0898 BsLM_0904 SM00382 ATPases associated with a variety of cellular activities BsLM_0919 SM01060 BsLM_0919 BsLM_0920 SM00382 ATPases associated with a variety of cellular activities BsLM_0921 SM00062 Bacterial periplasmic substrate-binding proteins BsLM_0927 SM00530 Helix-turn-helix XRE-family like proteins BsLM_0929 SM00567 E-Z type HEAT repeats BsLM_0935 SM00763 PrkA AAA domain BsLM_0937 SM00347 helix_turn_helix multiple antibiotic resistance protein BsLM_0943 SM00345 helix_turn_helix gluconate operon transcriptional repressor BsLM_0944 SM00382 ATPases associated with a variety of cellular activities BsLM_0945 SM00382 ATPases associated with a variety of cellular activities BsLM_0947 SM00357 Cold shock protein domain BsLM_0949 SM00267 diguanylate cyclase BsLM_0958 SM00318 Staphylococcal nuclease homologues BsLM_0960 SM00363 S4 RNA-binding domain BsLM_0962 SM00116 Domain in cystathionine beta-synthase and other proteins. BsLM_0972 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BsLM_0972 SM00387 Histidine kinase-like ATPases BsLM_0973 SM00421 helix_turn_helix, Lux Regulon BsLM_0973 SM00448 cheY-homologous receiver domain BsLM_0977 SM00257 Lysin motif BsLM_0981 SM00098 Alkaline phosphatase homologues BsLM_0982 SM00257 Lysin motif BsLM_0988 SM00345 helix_turn_helix gluconate operon transcriptional repressor BsLM_0994 SM00563 Phosphate acyltransferases BsLM_0995 SM01091 Transporter associated domain BsLM_0996 SM00422 helix_turn_helix, mercury resistance BsLM_0999 SM01091 Transporter associated domain BsLM_1011 SM00382 ATPases associated with a variety of cellular activities BsLM_1012 SM00382 ATPases associated with a variety of cellular activities BsLM_1023 SM00729 Elongator protein 3, MiaB family, Radical SAM BsLM_1029 SM00382 ATPases associated with a variety of cellular activities BsLM_1033 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BsLM_1039 SM00347 helix_turn_helix multiple antibiotic resistance protein BsLM_1045 SM00382 ATPases associated with a variety of cellular activities BsLM_1063 SM01022 BsLM_1063 BsLM_1066 SM00849 Metallo-beta-lactamase superfamily BsLM_1074 SM00829 Enoylreductase BsLM_1077 SM00855 Phosphoglycerate mutase family BsLM_1081 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BsLM_1084 SM00914 BsLM_1084 BsLM_1087 SM00894 Excalibur calcium-binding domain BsLM_1094 SM00347 helix_turn_helix multiple antibiotic resistance protein BsLM_1099 SM00354 helix_turn _helix lactose operon repressor BsLM_1127 SM00342 helix_turn_helix, arabinose operon control protein BsLM_1128 SM00354 helix_turn _helix lactose operon repressor BsLM_1133 SM00345 helix_turn_helix gluconate operon transcriptional repressor BsLM_1142 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BsLM_1149 SM00316 Ribosomal protein S1-like RNA-binding domain BsLM_1151 SM00752 Horizontally Transferred TransMembrane Domain BsLM_1169 SM00859 Semialdehyde dehydrogenase, NAD binding domain BsLM_1173 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BsLM_1174 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BsLM_1185 SM00825 Beta-ketoacyl synthase BsLM_1187 SM00382 ATPases associated with a variety of cellular activities BsLM_1188 SM00382 ATPases associated with a variety of cellular activities BsLM_1198 SM00382 ATPases associated with a variety of cellular activities BsLM_1199 SM00382 ATPases associated with a variety of cellular activities BsLM_1212 SM01118 BsLM_1212 BsLM_1214 SM00954 Region found in RelA / SpoT proteins BsLM_1258 SM00635 Bacterial Ig-like domain 2 BsLM_1278 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BsLM_1278 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BsLM_1288 SM00382 ATPases associated with a variety of cellular activities BsLM_1291 SM00835 Cupin BsLM_1299 SM00829 Enoylreductase BsLM_1303 SM00354 helix_turn _helix lactose operon repressor BsLM_1305 SM00858 BsLM_1305 BsLM_1308 SM00382 ATPases associated with a variety of cellular activities BsLM_1309 SM00028 Tetratricopeptide repeats BsLM_1312 SM00257 Lysin motif BsLM_1312 SM00644 BsLM_1312 BsLM_1317 SM00530 Helix-turn-helix XRE-family like proteins BsLM_1320 SM00382 ATPases associated with a variety of cellular activities BsLM_1339 SM00257 Lysin motif BsLM_1352 SM00257 Lysin motif BsLM_1352 SM00644 BsLM_1352 BsLM_1363 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BsLM_1368 SM00382 ATPases associated with a variety of cellular activities BsLM_1372 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BsLM_1374 SM00382 ATPases associated with a variety of cellular activities BsLM_1386 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BsLM_1389 SM00347 helix_turn_helix multiple antibiotic resistance protein BsLM_1398 SM00382 ATPases associated with a variety of cellular activities BsLM_1402 SM00448 cheY-homologous receiver domain BsLM_1402 SM00862 Transcriptional regulatory protein, C terminal BsLM_1403 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BsLM_1403 SM00387 Histidine kinase-like ATPases BsLM_1403 SM00388 His Kinase A (phosphoacceptor) domain BsLM_1408 SM00116 Domain in cystathionine beta-synthase and other proteins. BsLM_1408 SM00924 MgtE intracellular N domain BsLM_1409 SM00422 helix_turn_helix, mercury resistance BsLM_1412 SM00347 helix_turn_helix multiple antibiotic resistance protein BsLM_1419 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen BsLM_1420 SM00052 Putative diguanylate phosphodiesterase BsLM_1420 SM00267 diguanylate cyclase BsLM_1433 SM00091 PAS domain BsLM_1433 SM00387 Histidine kinase-like ATPases BsLM_1433 SM00388 His Kinase A (phosphoacceptor) domain BsLM_1442 SM01007 Class II Aldolase and Adducin N-terminal domain BsLM_1447 SM00387 Histidine kinase-like ATPases BsLM_1447 SM00388 His Kinase A (phosphoacceptor) domain BsLM_1449 SM00347 helix_turn_helix multiple antibiotic resistance protein BsLM_1452 SM00382 ATPases associated with a variety of cellular activities BsLM_1452 SM01086 C-terminal, D2-small domain, of ClpB protein BsLM_1459 SM00822 BsLM_1459 BsLM_1460 SM00257 Lysin motif BsLM_1461 SM00257 Lysin motif BsLM_1462 SM00636 BsLM_1462 BsLM_1476 SM00354 helix_turn _helix lactose operon repressor BsLM_1477 SM01061 CAT RNA binding domain BsLM_1484 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BsLM_1484 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BsLM_1488 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BsLM_1488 SM00091 PAS domain BsLM_1488 SM00387 Histidine kinase-like ATPases BsLM_1488 SM00388 His Kinase A (phosphoacceptor) domain BsLM_1491 SM00260 Two component signalling adaptor domain BsLM_1491 SM00448 cheY-homologous receiver domain BsLM_1494 SM00257 Lysin motif BsLM_1497 SM00052 Putative diguanylate phosphodiesterase BsLM_1518 SM00852 Probable molybdopterin binding domain BsLM_1522 SM00382 ATPases associated with a variety of cellular activities BsLM_1523 SM00382 ATPases associated with a variety of cellular activities BsLM_1526 SM00382 ATPases associated with a variety of cellular activities BsLM_1527 SM01066 Carbohydrate binding domain BsLM_1528 SM00420 helix_turn_helix, Deoxyribose operon repressor BsLM_1528 SM01134 BsLM_1528 BsLM_1533 SM00382 ATPases associated with a variety of cellular activities BsLM_1538 SM00966 SpoVT / AbrB like domain BsLM_1539 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BsLM_1539 SM00091 PAS domain BsLM_1539 SM00387 Histidine kinase-like ATPases BsLM_1539 SM00388 His Kinase A (phosphoacceptor) domain BsLM_1543 SM00849 Metallo-beta-lactamase superfamily BsLM_1572 SM00838 Elongation factor G C-terminus BsLM_1576 SM00670 Large family of predicted nucleotide-binding domains BsLM_1582 SM00878 Biotin carboxylase C-terminal domain BsLM_1592 SM00116 Domain in cystathionine beta-synthase and other proteins. BsLM_1602 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BsLM_1614 SM00740 BsLM_1614 BsLM_1615 SM00740 BsLM_1615 BsLM_1626 SM00842 Cell division protein FtsA BsLM_1627 SM00864 Tubulin/FtsZ family, GTPase domain BsLM_1627 SM00865 Tubulin/FtsZ family, C-terminal domain BsLM_1632 SM00382 ATPases associated with a variety of cellular activities BsLM_1639 SM00363 S4 RNA-binding domain BsLM_1644 SM00363 S4 RNA-binding domain BsLM_1649 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BsLM_1650 SM00851 MGS-like domain BsLM_1650 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BsLM_1650 SM01209 BsLM_1650 BsLM_1653 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BsLM_1663 SM00831 Cation transporter/ATPase, N-terminus BsLM_1666 SM00072 Guanylate kinase homologues. BsLM_1667 SM01409 BsLM_1667 BsLM_1669 SM00487 DEAD-like helicases superfamily BsLM_1669 SM00490 helicase superfamily c-terminal domain BsLM_1674 SM00331 Sigma factor PP2C-like phosphatases BsLM_1674 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BsLM_1675 SM00220 Serine/Threonine protein kinases, catalytic domain BsLM_1675 SM00740 BsLM_1675 BsLM_1678 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain BsLM_1681 SM01120 BsLM_1681 BsLM_1681 SM01121 BsLM_1681 BsLM_1684 SM00487 DEAD-like helicases superfamily BsLM_1684 SM00490 helicase superfamily c-terminal domain BsLM_1687 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BsLM_1688 SM00822 BsLM_1688 BsLM_1690 SM00358 Double-stranded RNA binding motif BsLM_1690 SM00535 Ribonuclease III family BsLM_1691 SM00968 SMC proteins Flexible Hinge Domain BsLM_1692 SM00382 ATPases associated with a variety of cellular activities BsLM_1692 SM00962 SRP54-type protein, GTPase domain BsLM_1692 SM00963 SRP54-type protein, helical bundle domain BsLM_1695 SM00382 ATPases associated with a variety of cellular activities BsLM_1695 SM00962 SRP54-type protein, GTPase domain BsLM_1695 SM00963 SRP54-type protein, helical bundle domain BsLM_1707 SM00881 CoA binding domain BsLM_1709 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BsLM_1709 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BsLM_1709 SM00493 BsLM_1709 BsLM_1713 SM00382 ATPases associated with a variety of cellular activities BsLM_1713 SM01086 C-terminal, D2-small domain, of ClpB protein BsLM_1721 SM00382 ATPases associated with a variety of cellular activities BsLM_1731 SM00448 cheY-homologous receiver domain BsLM_1738 SM00962 SRP54-type protein, GTPase domain BsLM_1740 SM00448 cheY-homologous receiver domain BsLM_1741 SM00073 Histidine Phosphotransfer domain BsLM_1741 SM00260 Two component signalling adaptor domain BsLM_1741 SM00387 Histidine kinase-like ATPases BsLM_1741 SM01231 BsLM_1741 BsLM_1742 SM00260 Two component signalling adaptor domain BsLM_1754 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BsLM_1756 SM00479 BsLM_1756 BsLM_1756 SM00481 DNA polymerase alpha chain like domain BsLM_1758 SM00316 Ribosomal protein S1-like RNA-binding domain BsLM_1758 SM00322 K homology RNA-binding domain BsLM_1765 SM00904 Riboflavin kinase BsLM_1766 SM00316 Ribosomal protein S1-like RNA-binding domain BsLM_1766 SM00322 K homology RNA-binding domain BsLM_1773 SM00859 Semialdehyde dehydrogenase, NAD binding domain BsLM_1775 SM01130 BsLM_1775 BsLM_1776 SM00849 Metallo-beta-lactamase superfamily BsLM_1779 SM00382 ATPases associated with a variety of cellular activities BsLM_1779 SM00843 BsLM_1779 BsLM_1780 SM00345 helix_turn_helix gluconate operon transcriptional repressor BsLM_1780 SM00866 BsLM_1780 BsLM_1787 SM00530 Helix-turn-helix XRE-family like proteins BsLM_1789 SM00852 Probable molybdopterin binding domain BsLM_1790 SM00382 ATPases associated with a variety of cellular activities BsLM_1792 SM00322 K homology RNA-binding domain BsLM_1792 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BsLM_1795 SM00829 Enoylreductase BsLM_1797 SM00729 Elongator protein 3, MiaB family, Radical SAM BsLM_1800 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BsLM_1800 SM00534 ATPase domain of DNA mismatch repair MUTS family BsLM_1801 SM00853 MutL C terminal dimerisation domain BsLM_1801 SM01340 BsLM_1801 BsLM_1805 SM00849 Metallo-beta-lactamase superfamily BsLM_1806 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BsLM_1808 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BsLM_1809 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BsLM_1811 SM00825 Beta-ketoacyl synthase BsLM_1815 SM00822 BsLM_1815 BsLM_1815 SM00823 Phosphopantetheine attachment site BsLM_1815 SM00825 Beta-ketoacyl synthase BsLM_1815 SM00826 BsLM_1815 BsLM_1815 SM01294 BsLM_1815 BsLM_1816 SM00822 BsLM_1816 BsLM_1816 SM00823 Phosphopantetheine attachment site BsLM_1816 SM00825 Beta-ketoacyl synthase BsLM_1816 SM00826 BsLM_1816 BsLM_1816 SM01294 BsLM_1816 BsLM_1817 SM00822 BsLM_1817 BsLM_1817 SM00823 Phosphopantetheine attachment site BsLM_1817 SM00825 Beta-ketoacyl synthase BsLM_1817 SM00826 BsLM_1817 BsLM_1817 SM01294 BsLM_1817 BsLM_1818 SM00822 BsLM_1818 BsLM_1818 SM00823 Phosphopantetheine attachment site BsLM_1818 SM00825 Beta-ketoacyl synthase BsLM_1818 SM00826 BsLM_1818 BsLM_1818 SM01294 BsLM_1818 BsLM_1819 SM00823 Phosphopantetheine attachment site BsLM_1819 SM00825 Beta-ketoacyl synthase BsLM_1819 SM01294 BsLM_1819 BsLM_1822 SM00849 Metallo-beta-lactamase superfamily BsLM_1840 SM00646 BsLM_1840 BsLM_1842 SM00382 ATPases associated with a variety of cellular activities BsLM_1845 SM00422 helix_turn_helix, mercury resistance BsLM_1846 SM01230 BsLM_1846 BsLM_1849 SM00860 SMI1 / KNR4 family BsLM_1865 SM00318 Staphylococcal nuclease homologues BsLM_1867 SM01005 Alanine racemase, C-terminal domain BsLM_1893 SM00257 Lysin motif BsLM_1894 SM00857 Resolvase, N terminal domain BsLM_1896 SM00861 Transketolase, pyrimidine binding domain BsLM_1901 SM00448 cheY-homologous receiver domain BsLM_1915 SM01207 BsLM_1915 BsLM_1917 SM00881 CoA binding domain BsLM_1918 SM00387 Histidine kinase-like ATPases BsLM_1918 SM00433 TopoisomeraseII BsLM_1919 SM00434 DNA Topoisomerase IV BsLM_1923 SM01067 Cellulose binding domain BsLM_1926 SM00606 Cellulose Binding Domain Type IV BsLM_1935 SM00878 Biotin carboxylase C-terminal domain BsLM_1941 SM00823 Phosphopantetheine attachment site BsLM_1941 SM00824 Thioesterase BsLM_1942 SM00823 Phosphopantetheine attachment site BsLM_1943 SM00823 Phosphopantetheine attachment site BsLM_1944 SM00823 Phosphopantetheine attachment site BsLM_1945 SM00823 Phosphopantetheine attachment site BsLM_1955 SM00829 Enoylreductase BsLM_1959 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BsLM_1962 SM00822 BsLM_1962 BsLM_1969 SM00382 ATPases associated with a variety of cellular activities BsLM_1970 SM00347 helix_turn_helix multiple antibiotic resistance protein BsLM_1975 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BsLM_1980 SM00354 helix_turn _helix lactose operon repressor BsLM_1984 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BsLM_1984 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BsLM_1988 SM00656 BsLM_1988 BsLM_1991 SM00835 Cupin BsLM_1997 SM00530 Helix-turn-helix XRE-family like proteins BsLM_2017 SM00860 SMI1 / KNR4 family BsLM_2019 SM00860 SMI1 / KNR4 family BsLM_2021 SM00710 Parallel beta-helix repeats BsLM_2023 SM00342 helix_turn_helix, arabinose operon control protein BsLM_2026 SM00849 Metallo-beta-lactamase superfamily BsLM_2027 SM00871 Bacterial transcription activator, effector binding domain BsLM_2030 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BsLM_2038 SM00421 helix_turn_helix, Lux Regulon BsLM_2038 SM00448 cheY-homologous receiver domain BsLM_2040 SM00257 Lysin motif BsLM_2041 SM00341 Helicase and RNase D C-terminal BsLM_2041 SM00487 DEAD-like helicases superfamily BsLM_2041 SM00490 helicase superfamily c-terminal domain BsLM_2041 SM00956 BsLM_2041 BsLM_2059 SM00861 Transketolase, pyrimidine binding domain BsLM_2060 SM00327 von Willebrand factor (vWF) type A domain BsLM_2061 SM00382 ATPases associated with a variety of cellular activities BsLM_2063 SM00257 Lysin motif BsLM_2082 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BsLM_2082 SM00245 tail specific protease BsLM_2089 SM00014 Acid phosphatase homologues BsLM_2098 SM00882 Coenzyme A transferase BsLM_2099 SM00882 Coenzyme A transferase BsLM_2112 SM00347 helix_turn_helix multiple antibiotic resistance protein BsLM_2120 SM00382 ATPases associated with a variety of cellular activities BsLM_2130 SM00567 E-Z type HEAT repeats BsLM_2130 SM00932 Scaffold protein Nfu/NifU N terminal BsLM_2131 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BsLM_2135 SM00357 Cold shock protein domain BsLM_2143 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BsLM_2143 SM00475 5'-3' exonuclease BsLM_2155 SM00354 helix_turn _helix lactose operon repressor BsLM_2158 SM00491 BsLM_2158 BsLM_2160 SM00981 BsLM_2160 BsLM_2165 SM00487 DEAD-like helicases superfamily BsLM_2165 SM00490 helicase superfamily c-terminal domain BsLM_2177 SM00478 endonuclease III BsLM_2177 SM00525 BsLM_2177 BsLM_2183 SM00479 BsLM_2183 BsLM_2183 SM00487 DEAD-like helicases superfamily BsLM_2183 SM00491 BsLM_2183 BsLM_2191 SM00851 MGS-like domain BsLM_2201 SM00914 BsLM_2201 BsLM_2202 SM00028 Tetratricopeptide repeats BsLM_2215 SM00138 Methyltransferase, chemotaxis proteins BsLM_2217 SM00562 BsLM_2217 BsLM_2223 SM00411 bacterial (prokaryotic) histone like domain BsLM_2233 SM01240 BsLM_2233 BsLM_2234 SM00316 Ribosomal protein S1-like RNA-binding domain BsLM_2242 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BsLM_2246 SM00257 Lysin motif BsLM_2248 SM00487 DEAD-like helicases superfamily BsLM_2248 SM00490 helicase superfamily c-terminal domain BsLM_2257 SM00091 PAS domain BsLM_2257 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BsLM_2257 SM00387 Histidine kinase-like ATPases BsLM_2257 SM00388 His Kinase A (phosphoacceptor) domain BsLM_2258 SM00448 cheY-homologous receiver domain BsLM_2258 SM00862 Transcriptional regulatory protein, C terminal BsLM_2262 SM00363 S4 RNA-binding domain BsLM_2265 SM00936 Penicillin-binding protein 5, C-terminal domain BsLM_2296 SM00387 Histidine kinase-like ATPases BsLM_2298 SM00936 Penicillin-binding protein 5, C-terminal domain BsLM_2306 SM00919 Malic enzyme, NAD binding domain BsLM_2306 SM01274 BsLM_2306 BsLM_2309 SM00870 BsLM_2309 BsLM_2310 SM00530 Helix-turn-helix XRE-family like proteins BsLM_2332 SM00849 Metallo-beta-lactamase superfamily BsLM_2337 SM00849 Metallo-beta-lactamase superfamily BsLM_2339 SM01350 BsLM_2339 BsLM_2350 SM00382 ATPases associated with a variety of cellular activities BsLM_2352 SM00062 Bacterial periplasmic substrate-binding proteins BsLM_2352 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BsLM_2354 SM00046 Diacylglycerol kinase catalytic domain (presumed) BsLM_2356 SM00422 helix_turn_helix, mercury resistance BsLM_2358 SM00861 Transketolase, pyrimidine binding domain BsLM_2362 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BsLM_2364 SM00091 PAS domain BsLM_2364 SM00382 ATPases associated with a variety of cellular activities BsLM_2373 SM00646 BsLM_2373 BsLM_2377 SM00448 cheY-homologous receiver domain BsLM_2379 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BsLM_2382 SM00363 S4 RNA-binding domain BsLM_2383 SM00861 Transketolase, pyrimidine binding domain BsLM_2390 SM00878 Biotin carboxylase C-terminal domain BsLM_2399 SM00382 ATPases associated with a variety of cellular activities BsLM_2401 SM00841 Elongation factor P, C-terminal BsLM_2401 SM01185 BsLM_2401 BsLM_2408 SM00529 Helix-turn-helix diphteria tox regulatory element BsLM_2410 SM00450 Rhodanese Homology Domain BsLM_2414 SM00487 DEAD-like helicases superfamily BsLM_2414 SM00490 helicase superfamily c-terminal domain BsLM_2417 SM00530 Helix-turn-helix XRE-family like proteins BsLM_2429 SM00382 ATPases associated with a variety of cellular activities BsLM_2433 SM01091 Transporter associated domain BsLM_2437 SM00849 Metallo-beta-lactamase superfamily BsLM_2441 SM00631 BsLM_2441 BsLM_2445 SM00028 Tetratricopeptide repeats BsLM_2453 SM00382 ATPases associated with a variety of cellular activities BsLM_2454 SM00382 ATPases associated with a variety of cellular activities BsLM_2463 SM00257 Lysin motif BsLM_2470 SM00518 AP endonuclease family 2 BsLM_2471 SM00487 DEAD-like helicases superfamily BsLM_2471 SM00490 helicase superfamily c-terminal domain BsLM_2479 SM00400 zinc finger BsLM_2479 SM00493 BsLM_2479 BsLM_2482 SM00116 Domain in cystathionine beta-synthase and other proteins. BsLM_2491 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BsLM_2501 SM00729 Elongator protein 3, MiaB family, Radical SAM BsLM_2504 SM00271 DnaJ molecular chaperone homology domain BsLM_2508 SM00729 Elongator protein 3, MiaB family, Radical SAM BsLM_2509 SM00838 Elongation factor G C-terminus BsLM_2517 SM00849 Metallo-beta-lactamase superfamily BsLM_2519 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BsLM_2523 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BsLM_2525 SM01103 BsLM_2525 BsLM_2531 SM00644 BsLM_2531 BsLM_2533 SM01350 BsLM_2533 BsLM_2537 SM00857 Resolvase, N terminal domain BsLM_2538 SM00226 Low molecular weight phosphatase family BsLM_2541 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BsLM_2543 SM00028 Tetratricopeptide repeats BsLM_2550 SM00644 BsLM_2550 BsLM_2560 SM00257 Lysin motif BsLM_2586 SM00382 ATPases associated with a variety of cellular activities BsLM_2592 SM00530 Helix-turn-helix XRE-family like proteins BsLM_2594 SM00530 Helix-turn-helix XRE-family like proteins BsLM_2595 SM00530 Helix-turn-helix XRE-family like proteins BsLM_2605 SM00450 Rhodanese Homology Domain BsLM_2605 SM00849 Metallo-beta-lactamase superfamily BsLM_2606 SM00450 Rhodanese Homology Domain BsLM_2611 SM00422 helix_turn_helix, mercury resistance BsLM_2614 SM01091 Transporter associated domain BsLM_2625 SM00344 helix_turn_helix ASNC type BsLM_2644 SM00287 Bacterial SH3 domain homologues BsLM_2652 SM00422 helix_turn_helix, mercury resistance BsLM_2654 SM00829 Enoylreductase BsLM_2656 SM00640 Glycosyl hydrolases family 32 BsLM_2661 SM00382 ATPases associated with a variety of cellular activities BsLM_2674 SM01209 BsLM_2674 BsLM_2680 SM00382 ATPases associated with a variety of cellular activities BsLM_2682 SM00984 UDP binding domain BsLM_2691 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BsLM_2691 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BsLM_2697 SM00650 Ribosomal RNA adenine dimethylases BsLM_2708 SM00732 Likely ribonuclease with RNase H fold. BsLM_2710 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BsLM_2712 SM00382 ATPases associated with a variety of cellular activities BsLM_2713 SM00062 Bacterial periplasmic substrate-binding proteins BsLM_2713 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BsLM_2719 SM00382 ATPases associated with a variety of cellular activities BsLM_2720 SM00028 Tetratricopeptide repeats BsLM_2724 SM00382 ATPases associated with a variety of cellular activities BsLM_2730 SM00287 Bacterial SH3 domain homologues BsLM_2730 SM00646 BsLM_2730 BsLM_2732 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BsLM_2732 SM00954 Region found in RelA / SpoT proteins BsLM_2743 SM01323 BsLM_2743 BsLM_2747 SM00382 ATPases associated with a variety of cellular activities BsLM_2748 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BsLM_2759 SM00257 Lysin motif BsLM_2768 SM01317 BsLM_2768 BsLM_2788 SM00257 Lysin motif BsLM_2790 SM01004 Delta-aminolevulinic acid dehydratase BsLM_2797 SM00382 ATPases associated with a variety of cellular activities BsLM_2797 SM00464 Found in ATP-dependent protease La (LON) BsLM_2798 SM00382 ATPases associated with a variety of cellular activities BsLM_2799 SM00382 ATPases associated with a variety of cellular activities BsLM_2799 SM00994 ClpX C4-type zinc finger BsLM_2799 SM01086 C-terminal, D2-small domain, of ClpB protein BsLM_2805 SM01329 BsLM_2805 BsLM_2806 SM00917 LeuA allosteric (dimerisation) domain BsLM_2817 SM00909 Sporulation and spore germination BsLM_2819 SM00347 helix_turn_helix multiple antibiotic resistance protein BsLM_2820 SM00421 helix_turn_helix, Lux Regulon BsLM_2827 SM00465 GIY-YIG type nucleases (URI domain) BsLM_2830 SM00813 Alpha-L-arabinofuranosidase C-terminus BsLM_2831 SM00893 Electron transfer flavoprotein domain BsLM_2832 SM00893 Electron transfer flavoprotein domain BsLM_2837 SM00463 Small MutS-related domain BsLM_2837 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BsLM_2837 SM00534 ATPase domain of DNA mismatch repair MUTS family BsLM_2838 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BsLM_2838 SM00481 DNA polymerase alpha chain like domain BsLM_2838 SM00483 DNA polymerase X family BsLM_2842 SM00873 B3/4 domain BsLM_2842 SM00874 tRNA synthetase B5 domain BsLM_2842 SM00896 Ferredoxin-fold anticodon binding domain BsLM_2845 SM00967 RNA 2'-O ribose methyltransferase substrate binding BsLM_2852 SM00813 Alpha-L-arabinofuranosidase C-terminus BsLM_2858 SM01007 Class II Aldolase and Adducin N-terminal domain BsLM_2871 SM00448 cheY-homologous receiver domain BsLM_2871 SM00850 LytTr DNA-binding domain BsLM_2872 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BsLM_2872 SM00387 Histidine kinase-like ATPases BsLM_2874 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BsLM_2877 SM00382 ATPases associated with a variety of cellular activities BsLM_2881 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BsLM_2887 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BsLM_2887 SM01232 BsLM_2887 BsLM_2888 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BsLM_2888 SM00474 3'-5' exonuclease BsLM_2888 SM00475 5'-3' exonuclease BsLM_2888 SM00482 DNA polymerase A domain BsLM_2889 SM00091 PAS domain BsLM_2889 SM00387 Histidine kinase-like ATPases BsLM_2889 SM00388 His Kinase A (phosphoacceptor) domain BsLM_2890 SM00448 cheY-homologous receiver domain BsLM_2890 SM00862 Transcriptional regulatory protein, C terminal BsLM_2893 SM01329 BsLM_2893 BsLM_2902 SM00919 Malic enzyme, NAD binding domain BsLM_2902 SM01274 BsLM_2902 BsLM_2903 SM00481 DNA polymerase alpha chain like domain BsLM_2910 SM00116 Domain in cystathionine beta-synthase and other proteins. BsLM_2913 SM00904 Riboflavin kinase BsLM_2917 SM00382 ATPases associated with a variety of cellular activities BsLM_2920 SM00062 Bacterial periplasmic substrate-binding proteins BsLM_2921 SM00062 Bacterial periplasmic substrate-binding proteins BsLM_2924 SM00849 Metallo-beta-lactamase superfamily BsLM_2929 SM00852 Probable molybdopterin binding domain BsLM_2942 SM00981 BsLM_2942 BsLM_2948 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BsLM_2949 SM00267 diguanylate cyclase BsLM_2951 SM00363 S4 RNA-binding domain BsLM_2951 SM01390 BsLM_2951 BsLM_2953 SM00363 S4 RNA-binding domain BsLM_2956 SM00116 Domain in cystathionine beta-synthase and other proteins. BsLM_2960 SM00354 helix_turn _helix lactose operon repressor BsLM_2961 SM00830 Chorismate mutase type II BsLM_2966 SM00382 ATPases associated with a variety of cellular activities BsLM_2966 SM00843 BsLM_2966 BsLM_2974 SM00919 Malic enzyme, NAD binding domain BsLM_2974 SM01274 BsLM_2974 BsLM_2975 SM00849 Metallo-beta-lactamase superfamily BsLM_2979 SM00642 Alpha-amylase domain BsLM_2980 SM00046 Diacylglycerol kinase catalytic domain (presumed) BsLM_2987 SM00382 ATPases associated with a variety of cellular activities BsLM_2988 SM00420 helix_turn_helix, Deoxyribose operon repressor BsLM_2989 SM00363 S4 RNA-binding domain BsLM_2999 SM00342 helix_turn_helix, arabinose operon control protein BsLM_3004 SM00729 Elongator protein 3, MiaB family, Radical SAM BsLM_3004 SM00876 Biotin and Thiamin Synthesis associated domain BsLM_3010 SM00354 helix_turn _helix lactose operon repressor BsLM_3015 SM00450 Rhodanese Homology Domain BsLM_3019 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BsLM_3019 SM00091 PAS domain BsLM_3023 SM00382 ATPases associated with a variety of cellular activities BsLM_3024 SM00387 Histidine kinase-like ATPases BsLM_3025 SM00448 cheY-homologous receiver domain BsLM_3025 SM00862 Transcriptional regulatory protein, C terminal BsLM_3027 SM00382 ATPases associated with a variety of cellular activities BsLM_3030 SM00382 ATPases associated with a variety of cellular activities BsLM_3031 SM00345 helix_turn_helix gluconate operon transcriptional repressor BsLM_3034 SM00729 Elongator protein 3, MiaB family, Radical SAM BsLM_3046 SM00382 ATPases associated with a variety of cellular activities BsLM_3054 SM01234 BsLM_3054 BsLM_3055 SM00947 Carbonic anhydrase BsLM_3062 SM00382 ATPases associated with a variety of cellular activities BsLM_3064 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BsLM_3072 SM00984 UDP binding domain BsLM_3084 SM00642 Alpha-amylase domain BsLM_3089 SM00244 prohibitin homologues BsLM_3100 SM00047 Lysozyme subfamily 2 BsLM_3109 SM00420 helix_turn_helix, Deoxyribose operon repressor BsLM_3109 SM01134 BsLM_3109 BsLM_3110 SM01007 Class II Aldolase and Adducin N-terminal domain BsLM_3112 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BsLM_3112 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BsLM_3112 SM00319 Homologues of the ligand binding domain of Tar BsLM_3113 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BsLM_3113 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BsLM_3113 SM00319 Homologues of the ligand binding domain of Tar BsLM_3114 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BsLM_3114 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BsLM_3114 SM00319 Homologues of the ligand binding domain of Tar BsLM_3115 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BsLM_3115 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BsLM_3115 SM00319 Homologues of the ligand binding domain of Tar BsLM_3121 SM00642 Alpha-amylase domain BsLM_3122 SM01091 Transporter associated domain BsLM_3133 SM00316 Ribosomal protein S1-like RNA-binding domain BsLM_3135 SM00344 helix_turn_helix ASNC type BsLM_3139 SM00387 Histidine kinase-like ATPases BsLM_3139 SM00388 His Kinase A (phosphoacceptor) domain BsLM_3140 SM01298 BsLM_3140 BsLM_3141 SM00479 BsLM_3141 BsLM_3147 SM00091 PAS domain BsLM_3147 SM00387 Histidine kinase-like ATPases BsLM_3148 SM00448 cheY-homologous receiver domain BsLM_3150 SM00382 ATPases associated with a variety of cellular activities BsLM_3163 SM00421 helix_turn_helix, Lux Regulon BsLM_3163 SM00448 cheY-homologous receiver domain BsLM_3164 SM00387 Histidine kinase-like ATPases BsLM_3170 SM00052 Putative diguanylate phosphodiesterase BsLM_3178 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BsLM_3188 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BsLM_3188 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BsLM_3190 SM00923 MbtH-like protein BsLM_3191 SM00823 Phosphopantetheine attachment site BsLM_3191 SM00824 Thioesterase BsLM_3208 SM01240 BsLM_3208 BsLM_3229 SM00729 Elongator protein 3, MiaB family, Radical SAM BsLM_3244 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BsLM_3252 SM00382 ATPases associated with a variety of cellular activities BsLM_3253 SM00345 helix_turn_helix gluconate operon transcriptional repressor BsLM_3253 SM00866 BsLM_3253 BsLM_3259 SM00465 GIY-YIG type nucleases (URI domain) BsLM_3268 SM00382 ATPases associated with a variety of cellular activities BsLM_3275 SM00382 ATPases associated with a variety of cellular activities BsLM_3275 SM00930 BsLM_3275 BsLM_3279 SM00493 BsLM_3279 BsLM_3290 SM00347 helix_turn_helix multiple antibiotic resistance protein BsLM_3296 SM00382 ATPases associated with a variety of cellular activities BsLM_3301 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BsLM_3302 SM00448 cheY-homologous receiver domain BsLM_3302 SM00862 Transcriptional regulatory protein, C terminal BsLM_3303 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BsLM_3303 SM00387 Histidine kinase-like ATPases BsLM_3303 SM00388 His Kinase A (phosphoacceptor) domain BsLM_3311 SM00421 helix_turn_helix, Lux Regulon BsLM_3311 SM00448 cheY-homologous receiver domain BsLM_3312 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BsLM_3312 SM00387 Histidine kinase-like ATPases BsLM_3319 SM00382 ATPases associated with a variety of cellular activities BsLM_3325 SM00387 Histidine kinase-like ATPases BsLM_3325 SM00388 His Kinase A (phosphoacceptor) domain BsLM_3326 SM00448 cheY-homologous receiver domain BsLM_3326 SM00862 Transcriptional regulatory protein, C terminal BsLM_3331 SM00835 Cupin BsLM_3334 SM00382 ATPases associated with a variety of cellular activities BsLM_3336 SM00382 ATPases associated with a variety of cellular activities BsLM_3371 SM00316 Ribosomal protein S1-like RNA-binding domain BsLM_3371 SM00357 Cold shock protein domain BsLM_3371 SM00955 BsLM_3371 BsLM_3375 SM00530 Helix-turn-helix XRE-family like proteins BsLM_3376 SM00530 Helix-turn-helix XRE-family like proteins BsLM_3377 SM00530 Helix-turn-helix XRE-family like proteins BsLM_3379 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BsLM_3379 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BsLM_3383 SM00116 Domain in cystathionine beta-synthase and other proteins. BsLM_3383 SM00382 ATPases associated with a variety of cellular activities BsLM_3388 SM00116 Domain in cystathionine beta-synthase and other proteins. BsLM_3388 SM00382 ATPases associated with a variety of cellular activities BsLM_3395 SM01192 BsLM_3395 BsLM_3395 SM01193 BsLM_3395 BsLM_3399 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BsLM_3402 SM00345 helix_turn_helix gluconate operon transcriptional repressor BsLM_3407 SM00636 BsLM_3407 BsLM_3411 SM00421 helix_turn_helix, Lux Regulon BsLM_3411 SM00448 cheY-homologous receiver domain BsLM_3414 SM00382 ATPases associated with a variety of cellular activities BsLM_3421 SM00354 helix_turn _helix lactose operon repressor BsLM_3423 SM00345 helix_turn_helix gluconate operon transcriptional repressor BsLM_3423 SM00895 BsLM_3423 BsLM_3443 SM00530 Helix-turn-helix XRE-family like proteins BsLM_3452 SM00640 Glycosyl hydrolases family 32 BsLM_3462 SM00642 Alpha-amylase domain BsLM_3468 SM00642 Alpha-amylase domain BsLM_3469 SM00354 helix_turn _helix lactose operon repressor BsLM_3473 SM00947 Carbonic anhydrase BsLM_3476 SM00382 ATPases associated with a variety of cellular activities BsLM_3477 SM00387 Histidine kinase-like ATPases BsLM_3478 SM00448 cheY-homologous receiver domain BsLM_3478 SM00862 Transcriptional regulatory protein, C terminal BsLM_3488 SM00028 Tetratricopeptide repeats BsLM_3489 SM00382 ATPases associated with a variety of cellular activities BsLM_3510 SM00345 helix_turn_helix gluconate operon transcriptional repressor BsLM_3510 SM00866 BsLM_3510 BsLM_3512 SM00347 helix_turn_helix multiple antibiotic resistance protein BsLM_3516 SM00347 helix_turn_helix multiple antibiotic resistance protein BsLM_3524 SM00382 ATPases associated with a variety of cellular activities BsLM_3525 SM00487 DEAD-like helicases superfamily BsLM_3525 SM00490 helicase superfamily c-terminal domain BsLM_3530 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BsLM_3532 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BsLM_3532 SM00245 tail specific protease BsLM_3534 SM00382 ATPases associated with a variety of cellular activities BsLM_3537 SM00937 BsLM_3537 BsLM_3538 SM00957 SecA DEAD-like domain BsLM_3538 SM00958 SecA preprotein cross-linking domain BsLM_3556 SM00487 DEAD-like helicases superfamily BsLM_3556 SM00490 helicase superfamily c-terminal domain BsLM_3558 SM00421 helix_turn_helix, Lux Regulon BsLM_3558 SM00448 cheY-homologous receiver domain BsLM_3559 SM00387 Histidine kinase-like ATPases BsLM_3567 SM00984 UDP binding domain BsLM_3571 SM00646 BsLM_3571 BsLM_3585 SM00382 ATPases associated with a variety of cellular activities BsLM_3594 SM00047 Lysozyme subfamily 2 BsLM_3594 SM00287 Bacterial SH3 domain homologues BsLM_3605 SM00854 Bacterial capsule synthesis protein PGA_cap BsLM_3608 SM00354 helix_turn _helix lactose operon repressor BsLM_3611 SM00382 ATPases associated with a variety of cellular activities BsLM_3614 SM00287 Bacterial SH3 domain homologues BsLM_3624 SM00903 Flavin reductase like domain BsLM_3627 SM00344 helix_turn_helix ASNC type BsLM_3642 SM00984 UDP binding domain BsLM_3648 SM00487 DEAD-like helicases superfamily BsLM_3648 SM00490 helicase superfamily c-terminal domain BsLM_3650 SM00420 helix_turn_helix, Deoxyribose operon repressor BsLM_3650 SM01134 BsLM_3650 BsLM_3657 SM00387 Histidine kinase-like ATPases BsLM_3660 SM00028 Tetratricopeptide repeats BsLM_3665 SM00347 helix_turn_helix multiple antibiotic resistance protein BsLM_3667 SM00710 Parallel beta-helix repeats BsLM_3667 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses BsLM_3673 SM00938 Nitrogen regulatory protein P-II BsLM_3674 SM00014 Acid phosphatase homologues BsLM_3682 SM00155 Phospholipase D. Active site motifs. BsLM_3683 SM00422 helix_turn_helix, mercury resistance BsLM_3693 SM00028 Tetratricopeptide repeats BsLM_3694 SM00729 Elongator protein 3, MiaB family, Radical SAM BsLM_3697 SM00327 von Willebrand factor (vWF) type A domain BsLM_3699 SM00327 von Willebrand factor (vWF) type A domain BsLM_3708 SM00382 ATPases associated with a variety of cellular activities BsLM_3720 SM00226 Low molecular weight phosphatase family BsLM_3728 SM00937 BsLM_3728 BsLM_3732 SM00919 Malic enzyme, NAD binding domain BsLM_3732 SM01274 BsLM_3732 BsLM_3735 SM00357 Cold shock protein domain BsLM_3735 SM00382 ATPases associated with a variety of cellular activities BsLM_3735 SM00959 Rho termination factor, N-terminal domain BsLM_3741 SM00448 cheY-homologous receiver domain BsLM_3747 SM00155 Phospholipase D. Active site motifs. BsLM_3751 SM00382 ATPases associated with a variety of cellular activities BsLM_3752 SM00155 Phospholipase D. Active site motifs. BsLM_3756 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BsLM_3759 SM00100 Cyclic nucleotide-monophosphate binding domain BsLM_3759 SM00419 helix_turn_helix, cAMP Regulatory protein BsLM_3761 SM00836 DALR anticodon binding domain BsLM_3761 SM01016 Arginyl tRNA synthetase N terminal dom BsLM_3764 SM00729 Elongator protein 3, MiaB family, Radical SAM BsLM_3774 SM00028 Tetratricopeptide repeats BsLM_3783 SM00347 helix_turn_helix multiple antibiotic resistance protein BsLM_3784 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BsLM_3789 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BsLM_3811 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BsLM_3819 SM00858 BsLM_3819 BsLM_3831 SM00986 Uracil DNA glycosylase superfamily BsLM_3831 SM00987 UreE urease accessory protein, C-terminal domain BsLM_3835 SM00640 Glycosyl hydrolases family 32 BsLM_3838 SM01061 CAT RNA binding domain BsLM_3868 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BsLM_3871 SM00612 BsLM_3871 BsLM_3876 SM01061 CAT RNA binding domain BsLM_3879 SM00347 helix_turn_helix multiple antibiotic resistance protein BsLM_3880 SM00363 S4 RNA-binding domain BsLM_3882 SM00530 Helix-turn-helix XRE-family like proteins BsLM_3885 SM00954 Region found in RelA / SpoT proteins BsLM_3902 SM01060 BsLM_3902 BsLM_3905 SM00382 ATPases associated with a variety of cellular activities BsLM_3912 SM00382 ATPases associated with a variety of cellular activities BsLM_3913 SM00382 ATPases associated with a variety of cellular activities BsLM_3920 SM00382 ATPases associated with a variety of cellular activities BsLM_3929 SM00421 helix_turn_helix, Lux Regulon BsLM_3929 SM00448 cheY-homologous receiver domain BsLM_3936 SM00822 BsLM_3936 BsLM_3937 SM00882 Coenzyme A transferase BsLM_3938 SM00882 Coenzyme A transferase BsLM_3946 SM01060 BsLM_3946 BsLM_3949 SM01061 CAT RNA binding domain BsLM_3953 SM00487 DEAD-like helicases superfamily BsLM_3953 SM00490 helicase superfamily c-terminal domain BsLM_3971 SM00860 SMI1 / KNR4 family BsLM_3983 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BsLM_3985 SM01133 BsLM_3985 BsLM_3991 SM00382 ATPases associated with a variety of cellular activities BsLM_3993 SM00062 Bacterial periplasmic substrate-binding proteins BsLM_4007 SM00382 ATPases associated with a variety of cellular activities BsLM_4008 SM00387 Histidine kinase-like ATPases BsLM_4009 SM00448 cheY-homologous receiver domain BsLM_4009 SM00862 Transcriptional regulatory protein, C terminal BsLM_4020 SM00420 helix_turn_helix, Deoxyribose operon repressor BsLM_4020 SM01134 BsLM_4020 BsLM_4026 SM00387 Histidine kinase-like ATPases BsLM_4032 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. BsLM_4038 SM00564 beta-propeller repeat BsLM_4045 SM00347 helix_turn_helix multiple antibiotic resistance protein BsLM_4050 SM00345 helix_turn_helix gluconate operon transcriptional repressor BsLM_4050 SM00895 BsLM_4050 BsLM_4053 SM01350 BsLM_4053 BsLM_4058 SM00345 helix_turn_helix gluconate operon transcriptional repressor BsLM_4058 SM00866 BsLM_4058 BsLM_4060 SM00382 ATPases associated with a variety of cellular activities BsLM_4080 SM00752 Horizontally Transferred TransMembrane Domain BsLM_4082 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BsLM_4083 SM00091 PAS domain BsLM_4083 SM00382 ATPases associated with a variety of cellular activities BsLM_4084 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BsLM_4084 SM00387 Histidine kinase-like ATPases BsLM_4084 SM00388 His Kinase A (phosphoacceptor) domain BsLM_4085 SM00448 cheY-homologous receiver domain BsLM_4085 SM00862 Transcriptional regulatory protein, C terminal BsLM_4088 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BsLM_4089 SM00849 Metallo-beta-lactamase superfamily BsLM_4092 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BsLM_4092 SM00091 PAS domain BsLM_4092 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BsLM_4092 SM00387 Histidine kinase-like ATPases BsLM_4092 SM00388 His Kinase A (phosphoacceptor) domain BsLM_4093 SM00448 cheY-homologous receiver domain BsLM_4093 SM00862 Transcriptional regulatory protein, C terminal BsLM_4094 SM00788 Adenylosuccinate synthetase BsLM_4097 SM00382 ATPases associated with a variety of cellular activities BsLM_4104 SM00267 diguanylate cyclase BsLM_4110 SM01131 BsLM_4110 BsLM_4114 SM00422 helix_turn_helix, mercury resistance BsLM_4122 SM00849 Metallo-beta-lactamase superfamily BsLM_4123 SM00347 helix_turn_helix multiple antibiotic resistance protein BsLM_4133 SM01266 BsLM_4133 BsLM_4135 SM00354 helix_turn _helix lactose operon repressor BsLM_4140 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BsLM_4144 SM00470 ParB-like nuclease domain BsLM_4147 SM00470 ParB-like nuclease domain BsLM_4149 SM01228 BsLM_4149 BsLM_4151 SM00322 K homology RNA-binding domain BsLM_4151 SM00393 Putative single-stranded nucleic acids-binding domain BsLM_4151 SM01245 BsLM_4151