CDO84_00050 SM00829 Enoylreductase CDO84_00085 SM00342 helix_turn_helix, arabinose operon control protein CDO84_00185 SM00478 endonuclease III CDO84_00190 SM00342 helix_turn_helix, arabinose operon control protein CDO84_00225 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CDO84_00250 SM00448 cheY-homologous receiver domain CDO84_00250 SM00862 Transcriptional regulatory protein, C terminal CDO84_00255 SM00387 Histidine kinase-like ATPases CDO84_00255 SM00388 His Kinase A (phosphoacceptor) domain CDO84_00340 SM00347 helix_turn_helix multiple antibiotic resistance protein CDO84_00360 SM00342 helix_turn_helix, arabinose operon control protein CDO84_00410 SM00342 helix_turn_helix, arabinose operon control protein CDO84_00415 SM00450 Rhodanese Homology Domain CDO84_00435 SM00345 helix_turn_helix gluconate operon transcriptional repressor CDO84_00435 SM00866 CDO84_00435 CDO84_00470 SM00387 Histidine kinase-like ATPases CDO84_00475 SM00448 cheY-homologous receiver domain CDO84_00480 SM01130 CDO84_00480 CDO84_00495 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CDO84_00500 SM00345 helix_turn_helix gluconate operon transcriptional repressor CDO84_00500 SM00895 CDO84_00500 CDO84_00505 SM00858 CDO84_00505 CDO84_00525 SM00448 cheY-homologous receiver domain CDO84_00525 SM00862 Transcriptional regulatory protein, C terminal CDO84_00530 SM00387 Histidine kinase-like ATPases CDO84_00530 SM00388 His Kinase A (phosphoacceptor) domain CDO84_00535 SM00382 ATPases associated with a variety of cellular activities CDO84_00600 SM00870 CDO84_00600 CDO84_00620 SM00387 Histidine kinase-like ATPases CDO84_00625 SM00448 cheY-homologous receiver domain CDO84_00625 SM00850 LytTr DNA-binding domain CDO84_00630 SM00382 ATPases associated with a variety of cellular activities CDO84_00670 SM00028 Tetratricopeptide repeats CDO84_00680 SM00642 Alpha-amylase domain CDO84_00690 SM00382 ATPases associated with a variety of cellular activities CDO84_00745 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CDO84_00750 SM00116 Domain in cystathionine beta-synthase and other proteins. CDO84_00750 SM00382 ATPases associated with a variety of cellular activities CDO84_00780 SM00632 CDO84_00780 CDO84_00780 SM00642 Alpha-amylase domain CDO84_00800 SM00347 helix_turn_helix multiple antibiotic resistance protein CDO84_00915 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CDO84_00940 SM00833 Cobalamin synthesis protein cobW C-terminal domain CDO84_00950 SM00062 Bacterial periplasmic substrate-binding proteins CDO84_00980 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CDO84_00980 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDO84_00990 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CDO84_01000 SM00823 Phosphopantetheine attachment site CDO84_01000 SM01294 CDO84_01000 CDO84_01005 SM00823 Phosphopantetheine attachment site CDO84_01005 SM01294 CDO84_01005 CDO84_01010 SM00823 Phosphopantetheine attachment site CDO84_01015 SM00824 Thioesterase CDO84_01035 SM00345 helix_turn_helix gluconate operon transcriptional repressor CDO84_01050 SM00382 ATPases associated with a variety of cellular activities CDO84_01060 SM00062 Bacterial periplasmic substrate-binding proteins CDO84_01100 SM00710 Parallel beta-helix repeats CDO84_01100 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses CDO84_01125 SM00382 ATPases associated with a variety of cellular activities CDO84_01135 SM00448 cheY-homologous receiver domain CDO84_01135 SM00862 Transcriptional regulatory protein, C terminal CDO84_01140 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDO84_01140 SM00387 Histidine kinase-like ATPases CDO84_01140 SM00388 His Kinase A (phosphoacceptor) domain CDO84_01145 SM00028 Tetratricopeptide repeats CDO84_01175 SM00382 ATPases associated with a variety of cellular activities CDO84_01205 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CDO84_01210 SM00345 helix_turn_helix gluconate operon transcriptional repressor CDO84_01245 SM00420 helix_turn_helix, Deoxyribose operon repressor CDO84_01270 SM01329 CDO84_01270 CDO84_01315 SM00796 Allophanate hydrolase subunit 1 CDO84_01320 SM00797 Allophanate hydrolase subunit 2 CDO84_01325 SM00346 helix_turn_helix isocitrate lyase regulation CDO84_01400 SM00344 helix_turn_helix ASNC type CDO84_01405 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CDO84_01405 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CDO84_01405 SM00493 CDO84_01405 CDO84_01415 SM00267 diguanylate cyclase CDO84_01505 SM00091 PAS domain CDO84_01505 SM00387 Histidine kinase-like ATPases CDO84_01510 SM00448 cheY-homologous receiver domain CDO84_01530 SM00382 ATPases associated with a variety of cellular activities CDO84_01585 SM00487 DEAD-like helicases superfamily CDO84_01585 SM00490 helicase superfamily c-terminal domain CDO84_01615 SM01005 Alanine racemase, C-terminal domain CDO84_01640 SM00387 Histidine kinase-like ATPases CDO84_01645 SM00331 Sigma factor PP2C-like phosphatases CDO84_01665 SM00331 Sigma factor PP2C-like phosphatases CDO84_01665 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CDO84_01680 SM00347 helix_turn_helix multiple antibiotic resistance protein CDO84_01685 SM00316 Ribosomal protein S1-like RNA-binding domain CDO84_01685 SM00732 Likely ribonuclease with RNase H fold. CDO84_01695 SM00731 SprT homologues. CDO84_01745 SM00860 SMI1 / KNR4 family CDO84_01775 SM00530 Helix-turn-helix XRE-family like proteins CDO84_01810 SM00357 Cold shock protein domain CDO84_01820 SM00342 helix_turn_helix, arabinose operon control protein CDO84_01830 SM00342 helix_turn_helix, arabinose operon control protein CDO84_01830 SM00871 Bacterial transcription activator, effector binding domain CDO84_01835 SM00345 helix_turn_helix gluconate operon transcriptional repressor CDO84_01865 SM00345 helix_turn_helix gluconate operon transcriptional repressor CDO84_01935 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDO84_01935 SM00387 Histidine kinase-like ATPases CDO84_01935 SM00388 His Kinase A (phosphoacceptor) domain CDO84_01940 SM00448 cheY-homologous receiver domain CDO84_01940 SM00862 Transcriptional regulatory protein, C terminal CDO84_01950 SM00345 helix_turn_helix gluconate operon transcriptional repressor CDO84_01960 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CDO84_01980 SM00387 Histidine kinase-like ATPases CDO84_01985 SM00421 helix_turn_helix, Lux Regulon CDO84_01985 SM00448 cheY-homologous receiver domain CDO84_02005 SM00345 helix_turn_helix gluconate operon transcriptional repressor CDO84_02035 SM00422 helix_turn_helix, mercury resistance CDO84_02035 SM00871 Bacterial transcription activator, effector binding domain CDO84_02115 SM00382 ATPases associated with a variety of cellular activities CDO84_02130 SM00347 helix_turn_helix multiple antibiotic resistance protein CDO84_02145 SM00347 helix_turn_helix multiple antibiotic resistance protein CDO84_02145 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CDO84_02160 SM00345 helix_turn_helix gluconate operon transcriptional repressor CDO84_02160 SM00895 CDO84_02160 CDO84_02165 SM00257 Lysin motif CDO84_02165 SM00636 CDO84_02165 CDO84_02180 SM00098 Alkaline phosphatase homologues CDO84_02200 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CDO84_02235 SM00345 helix_turn_helix gluconate operon transcriptional repressor CDO84_02235 SM00866 CDO84_02235 CDO84_02320 SM00382 ATPases associated with a variety of cellular activities CDO84_02330 SM00881 CoA binding domain CDO84_02355 SM00883 Chaperonin 10 Kd subunit CDO84_02380 SM00028 Tetratricopeptide repeats CDO84_02380 SM00382 ATPases associated with a variety of cellular activities CDO84_02385 SM00829 Enoylreductase CDO84_02430 SM00829 Enoylreductase CDO84_02495 SM00460 Transglutaminase/protease-like homologues CDO84_02540 SM01001 AIR carboxylase CDO84_02550 SM00998 Adenylosuccinate lyase C-terminus CDO84_02565 SM01211 CDO84_02565 CDO84_02590 SM00798 AICARFT/IMPCHase bienzyme CDO84_02590 SM00851 MGS-like domain CDO84_02595 SM01209 CDO84_02595 CDO84_02595 SM01210 CDO84_02595 CDO84_02600 SM00344 helix_turn_helix ASNC type CDO84_02645 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CDO84_02645 SM00292 breast cancer carboxy-terminal domain CDO84_02645 SM00532 Ligase N family CDO84_02700 SM00822 CDO84_02700 CDO84_02700 SM00823 Phosphopantetheine attachment site CDO84_02700 SM00825 Beta-ketoacyl synthase CDO84_02700 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CDO84_02705 SM00823 Phosphopantetheine attachment site CDO84_02710 SM00822 CDO84_02710 CDO84_02710 SM00823 Phosphopantetheine attachment site CDO84_02710 SM00825 Beta-ketoacyl synthase CDO84_02710 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CDO84_02715 SM00822 CDO84_02715 CDO84_02715 SM00823 Phosphopantetheine attachment site CDO84_02715 SM00825 Beta-ketoacyl synthase CDO84_02715 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CDO84_02720 SM00823 Phosphopantetheine attachment site CDO84_02720 SM00825 Beta-ketoacyl synthase CDO84_02720 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CDO84_02730 SM00098 Alkaline phosphatase homologues CDO84_02760 SM00845 GatB domain CDO84_02775 SM00046 Diacylglycerol kinase catalytic domain (presumed) CDO84_02805 SM00028 Tetratricopeptide repeats CDO84_02850 SM00028 Tetratricopeptide repeats CDO84_02915 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDO84_02915 SM00387 Histidine kinase-like ATPases CDO84_02920 SM00342 helix_turn_helix, arabinose operon control protein CDO84_02920 SM00448 cheY-homologous receiver domain CDO84_02945 SM00342 helix_turn_helix, arabinose operon control protein CDO84_03120 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CDO84_03125 SM00382 ATPases associated with a variety of cellular activities CDO84_03135 SM00422 helix_turn_helix, mercury resistance CDO84_03145 SM00382 ATPases associated with a variety of cellular activities CDO84_03150 SM00487 DEAD-like helicases superfamily CDO84_03150 SM00490 helicase superfamily c-terminal domain CDO84_03160 SM00829 Enoylreductase CDO84_03165 SM00382 ATPases associated with a variety of cellular activities CDO84_03200 SM00656 CDO84_03200 CDO84_03225 SM00028 Tetratricopeptide repeats CDO84_03235 SM00387 Histidine kinase-like ATPases CDO84_03240 SM00448 cheY-homologous receiver domain CDO84_03255 SM00849 Metallo-beta-lactamase superfamily CDO84_03335 SM00642 Alpha-amylase domain CDO84_03340 SM00345 helix_turn_helix gluconate operon transcriptional repressor CDO84_03340 SM00866 CDO84_03340 CDO84_03370 SM00226 Low molecular weight phosphatase family CDO84_03430 SM00478 endonuclease III CDO84_03470 SM00861 Transketolase, pyrimidine binding domain CDO84_03485 SM00382 ATPases associated with a variety of cellular activities CDO84_03535 SM00382 ATPases associated with a variety of cellular activities CDO84_03540 SM00382 ATPases associated with a variety of cellular activities CDO84_03555 SM00387 Histidine kinase-like ATPases CDO84_03560 SM00421 helix_turn_helix, Lux Regulon CDO84_03560 SM00448 cheY-homologous receiver domain CDO84_03570 SM00382 ATPases associated with a variety of cellular activities CDO84_03620 SM00347 helix_turn_helix multiple antibiotic resistance protein CDO84_03700 SM00287 Bacterial SH3 domain homologues CDO84_03730 SM00478 endonuclease III CDO84_03730 SM00525 CDO84_03730 CDO84_03760 SM00382 ATPases associated with a variety of cellular activities CDO84_03925 SM01060 CDO84_03925 CDO84_03930 SM00382 ATPases associated with a variety of cellular activities CDO84_03935 SM00062 Bacterial periplasmic substrate-binding proteins CDO84_03965 SM00530 Helix-turn-helix XRE-family like proteins CDO84_03980 SM00567 E-Z type HEAT repeats CDO84_04010 SM00763 PrkA AAA domain CDO84_04020 SM00347 helix_turn_helix multiple antibiotic resistance protein CDO84_04055 SM00345 helix_turn_helix gluconate operon transcriptional repressor CDO84_04060 SM00382 ATPases associated with a variety of cellular activities CDO84_04065 SM00382 ATPases associated with a variety of cellular activities CDO84_04075 SM00357 Cold shock protein domain CDO84_04090 SM00267 diguanylate cyclase CDO84_04130 SM00318 Staphylococcal nuclease homologues CDO84_04140 SM00363 S4 RNA-binding domain CDO84_04150 SM00116 Domain in cystathionine beta-synthase and other proteins. CDO84_04195 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CDO84_04195 SM00387 Histidine kinase-like ATPases CDO84_04200 SM00421 helix_turn_helix, Lux Regulon CDO84_04200 SM00448 cheY-homologous receiver domain CDO84_04220 SM00257 Lysin motif CDO84_04240 SM00098 Alkaline phosphatase homologues CDO84_04245 SM00257 Lysin motif CDO84_04275 SM00345 helix_turn_helix gluconate operon transcriptional repressor CDO84_04305 SM00563 Phosphate acyltransferases CDO84_04310 SM01091 Transporter associated domain CDO84_04315 SM00422 helix_turn_helix, mercury resistance CDO84_04325 SM01091 Transporter associated domain CDO84_04385 SM00382 ATPases associated with a variety of cellular activities CDO84_04390 SM00382 ATPases associated with a variety of cellular activities CDO84_04445 SM00729 Elongator protein 3, MiaB family, Radical SAM CDO84_04475 SM00382 ATPases associated with a variety of cellular activities CDO84_04495 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CDO84_04535 SM00347 helix_turn_helix multiple antibiotic resistance protein CDO84_04565 SM00382 ATPases associated with a variety of cellular activities CDO84_04650 SM01022 CDO84_04650 CDO84_04665 SM00849 Metallo-beta-lactamase superfamily CDO84_04705 SM00829 Enoylreductase CDO84_04715 SM00855 Phosphoglycerate mutase family CDO84_04735 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CDO84_04750 SM00914 CDO84_04750 CDO84_04775 SM00894 Excalibur calcium-binding domain CDO84_04810 SM00347 helix_turn_helix multiple antibiotic resistance protein CDO84_04940 SM00342 helix_turn_helix, arabinose operon control protein CDO84_04945 SM00354 helix_turn _helix lactose operon repressor CDO84_04965 SM00345 helix_turn_helix gluconate operon transcriptional repressor CDO84_05010 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CDO84_05040 SM00316 Ribosomal protein S1-like RNA-binding domain CDO84_05050 SM00752 Horizontally Transferred TransMembrane Domain CDO84_05130 SM00859 Semialdehyde dehydrogenase, NAD binding domain CDO84_05150 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CDO84_05155 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CDO84_05205 SM00825 Beta-ketoacyl synthase CDO84_05215 SM00382 ATPases associated with a variety of cellular activities CDO84_05220 SM00382 ATPases associated with a variety of cellular activities CDO84_05265 SM00382 ATPases associated with a variety of cellular activities CDO84_05270 SM00382 ATPases associated with a variety of cellular activities CDO84_05335 SM01118 CDO84_05335 CDO84_05345 SM00954 Region found in RelA / SpoT proteins CDO84_05540 SM00028 Tetratricopeptide repeats CDO84_05645 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CDO84_05645 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CDO84_05695 SM00382 ATPases associated with a variety of cellular activities CDO84_05705 SM00835 Cupin CDO84_05735 SM00829 Enoylreductase CDO84_05755 SM00354 helix_turn _helix lactose operon repressor CDO84_05765 SM00858 CDO84_05765 CDO84_05780 SM00382 ATPases associated with a variety of cellular activities CDO84_05785 SM00028 Tetratricopeptide repeats CDO84_05800 SM00257 Lysin motif CDO84_05800 SM00644 CDO84_05800 CDO84_05825 SM00530 Helix-turn-helix XRE-family like proteins CDO84_05840 SM00382 ATPases associated with a variety of cellular activities CDO84_05940 SM00257 Lysin motif CDO84_06005 SM00257 Lysin motif CDO84_06005 SM00644 CDO84_06005 CDO84_06050 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CDO84_06075 SM00382 ATPases associated with a variety of cellular activities CDO84_06090 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CDO84_06100 SM00382 ATPases associated with a variety of cellular activities CDO84_06160 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CDO84_06175 SM00347 helix_turn_helix multiple antibiotic resistance protein CDO84_06215 SM00382 ATPases associated with a variety of cellular activities CDO84_06230 SM00448 cheY-homologous receiver domain CDO84_06230 SM00862 Transcriptional regulatory protein, C terminal CDO84_06235 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDO84_06235 SM00387 Histidine kinase-like ATPases CDO84_06235 SM00388 His Kinase A (phosphoacceptor) domain CDO84_06255 SM00116 Domain in cystathionine beta-synthase and other proteins. CDO84_06255 SM00924 MgtE intracellular N domain CDO84_06260 SM00422 helix_turn_helix, mercury resistance CDO84_06275 SM00347 helix_turn_helix multiple antibiotic resistance protein CDO84_06310 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen CDO84_06315 SM00052 Putative diguanylate phosphodiesterase CDO84_06315 SM00267 diguanylate cyclase CDO84_06375 SM00091 PAS domain CDO84_06375 SM00387 Histidine kinase-like ATPases CDO84_06375 SM00388 His Kinase A (phosphoacceptor) domain CDO84_06415 SM01007 Class II Aldolase and Adducin N-terminal domain CDO84_06440 SM00387 Histidine kinase-like ATPases CDO84_06440 SM00388 His Kinase A (phosphoacceptor) domain CDO84_06445 SM00347 helix_turn_helix multiple antibiotic resistance protein CDO84_06460 SM00382 ATPases associated with a variety of cellular activities CDO84_06460 SM01086 C-terminal, D2-small domain, of ClpB protein CDO84_06490 SM00530 Helix-turn-helix XRE-family like proteins CDO84_06560 SM00354 helix_turn _helix lactose operon repressor CDO84_06565 SM01061 CAT RNA binding domain CDO84_06600 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CDO84_06600 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDO84_06625 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CDO84_06625 SM00091 PAS domain CDO84_06625 SM00387 Histidine kinase-like ATPases CDO84_06625 SM00388 His Kinase A (phosphoacceptor) domain CDO84_06640 SM00260 Two component signalling adaptor domain CDO84_06640 SM00448 cheY-homologous receiver domain CDO84_06655 SM00257 Lysin motif CDO84_06670 SM00052 Putative diguanylate phosphodiesterase CDO84_06765 SM00852 Probable molybdopterin binding domain CDO84_06785 SM00382 ATPases associated with a variety of cellular activities CDO84_06790 SM00382 ATPases associated with a variety of cellular activities CDO84_06805 SM00382 ATPases associated with a variety of cellular activities CDO84_06810 SM01066 Carbohydrate binding domain CDO84_06815 SM00420 helix_turn_helix, Deoxyribose operon repressor CDO84_06815 SM01134 CDO84_06815 CDO84_06840 SM00382 ATPases associated with a variety of cellular activities CDO84_06865 SM00966 SpoVT / AbrB like domain CDO84_06870 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CDO84_06870 SM00091 PAS domain CDO84_06870 SM00387 Histidine kinase-like ATPases CDO84_06870 SM00388 His Kinase A (phosphoacceptor) domain CDO84_06890 SM00849 Metallo-beta-lactamase superfamily CDO84_06925 SM00861 Transketolase, pyrimidine binding domain CDO84_07020 SM00838 Elongation factor G C-terminus CDO84_07040 SM00670 Large family of predicted nucleotide-binding domains CDO84_07065 SM00878 Biotin carboxylase C-terminal domain CDO84_07110 SM00116 Domain in cystathionine beta-synthase and other proteins. CDO84_07160 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CDO84_07220 SM00740 CDO84_07220 CDO84_07225 SM00740 CDO84_07225 CDO84_07280 SM00842 Cell division protein FtsA CDO84_07285 SM00864 Tubulin/FtsZ family, GTPase domain CDO84_07285 SM00865 Tubulin/FtsZ family, C-terminal domain CDO84_07310 SM00382 ATPases associated with a variety of cellular activities CDO84_07345 SM00363 S4 RNA-binding domain CDO84_07370 SM00363 S4 RNA-binding domain CDO84_07395 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CDO84_07400 SM00851 MGS-like domain CDO84_07400 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CDO84_07400 SM01209 CDO84_07400 CDO84_07415 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CDO84_07465 SM00831 Cation transporter/ATPase, N-terminus CDO84_07480 SM00072 Guanylate kinase homologues. CDO84_07485 SM01409 CDO84_07485 CDO84_07495 SM00487 DEAD-like helicases superfamily CDO84_07495 SM00490 helicase superfamily c-terminal domain CDO84_07520 SM00331 Sigma factor PP2C-like phosphatases CDO84_07520 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CDO84_07525 SM00220 Serine/Threonine protein kinases, catalytic domain CDO84_07525 SM00740 CDO84_07525 CDO84_07540 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain CDO84_07560 SM01120 CDO84_07560 CDO84_07560 SM01121 CDO84_07560 CDO84_07575 SM00487 DEAD-like helicases superfamily CDO84_07575 SM00490 helicase superfamily c-terminal domain CDO84_07590 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CDO84_07595 SM00822 CDO84_07595 CDO84_07605 SM00358 Double-stranded RNA binding motif CDO84_07605 SM00535 Ribonuclease III family CDO84_07610 SM00968 SMC proteins Flexible Hinge Domain CDO84_07615 SM00382 ATPases associated with a variety of cellular activities CDO84_07615 SM00962 SRP54-type protein, GTPase domain CDO84_07615 SM00963 SRP54-type protein, helical bundle domain CDO84_07630 SM00382 ATPases associated with a variety of cellular activities CDO84_07630 SM00962 SRP54-type protein, GTPase domain CDO84_07630 SM00963 SRP54-type protein, helical bundle domain CDO84_07690 SM00881 CoA binding domain CDO84_07700 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CDO84_07700 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CDO84_07700 SM00493 CDO84_07700 CDO84_07720 SM00382 ATPases associated with a variety of cellular activities CDO84_07720 SM01086 C-terminal, D2-small domain, of ClpB protein CDO84_07760 SM00382 ATPases associated with a variety of cellular activities CDO84_07810 SM00448 cheY-homologous receiver domain CDO84_07845 SM00962 SRP54-type protein, GTPase domain CDO84_07855 SM00448 cheY-homologous receiver domain CDO84_07860 SM00073 Histidine Phosphotransfer domain CDO84_07860 SM00260 Two component signalling adaptor domain CDO84_07860 SM00387 Histidine kinase-like ATPases CDO84_07860 SM01231 CDO84_07860 CDO84_07865 SM00260 Two component signalling adaptor domain CDO84_07925 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CDO84_07935 SM00479 CDO84_07935 CDO84_07935 SM00481 DNA polymerase alpha chain like domain CDO84_07945 SM00316 Ribosomal protein S1-like RNA-binding domain CDO84_07945 SM00322 K homology RNA-binding domain CDO84_07980 SM00904 Riboflavin kinase CDO84_07985 SM01387 CDO84_07985 CDO84_07990 SM00316 Ribosomal protein S1-like RNA-binding domain CDO84_07990 SM00322 K homology RNA-binding domain CDO84_08020 SM00859 Semialdehyde dehydrogenase, NAD binding domain CDO84_08030 SM01130 CDO84_08030 CDO84_08035 SM00849 Metallo-beta-lactamase superfamily CDO84_08050 SM00382 ATPases associated with a variety of cellular activities CDO84_08050 SM00843 CDO84_08050 CDO84_08055 SM00345 helix_turn_helix gluconate operon transcriptional repressor CDO84_08055 SM00866 CDO84_08055 CDO84_08090 SM00530 Helix-turn-helix XRE-family like proteins CDO84_08100 SM00852 Probable molybdopterin binding domain CDO84_08105 SM00382 ATPases associated with a variety of cellular activities CDO84_08115 SM00322 K homology RNA-binding domain CDO84_08115 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CDO84_08130 SM00829 Enoylreductase CDO84_08140 SM00729 Elongator protein 3, MiaB family, Radical SAM CDO84_08155 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CDO84_08155 SM00534 ATPase domain of DNA mismatch repair MUTS family CDO84_08160 SM00853 MutL C terminal dimerisation domain CDO84_08160 SM01340 CDO84_08160 CDO84_08210 SM00849 Metallo-beta-lactamase superfamily CDO84_08220 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CDO84_08225 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CDO84_08230 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CDO84_08240 SM00825 Beta-ketoacyl synthase CDO84_08260 SM00822 CDO84_08260 CDO84_08260 SM00823 Phosphopantetheine attachment site CDO84_08260 SM00825 Beta-ketoacyl synthase CDO84_08260 SM00826 CDO84_08260 CDO84_08260 SM01294 CDO84_08260 CDO84_08265 SM00822 CDO84_08265 CDO84_08265 SM00823 Phosphopantetheine attachment site CDO84_08265 SM00825 Beta-ketoacyl synthase CDO84_08265 SM00826 CDO84_08265 CDO84_08265 SM01294 CDO84_08265 CDO84_08270 SM00822 CDO84_08270 CDO84_08270 SM00823 Phosphopantetheine attachment site CDO84_08270 SM00825 Beta-ketoacyl synthase CDO84_08270 SM00826 CDO84_08270 CDO84_08270 SM01294 CDO84_08270 CDO84_08275 SM00822 CDO84_08275 CDO84_08275 SM00823 Phosphopantetheine attachment site CDO84_08275 SM00825 Beta-ketoacyl synthase CDO84_08275 SM00826 CDO84_08275 CDO84_08275 SM01294 CDO84_08275 CDO84_08280 SM00823 Phosphopantetheine attachment site CDO84_08280 SM00825 Beta-ketoacyl synthase CDO84_08280 SM01294 CDO84_08280 CDO84_08295 SM00849 Metallo-beta-lactamase superfamily CDO84_08380 SM00646 CDO84_08380 CDO84_08390 SM00382 ATPases associated with a variety of cellular activities CDO84_08405 SM00422 helix_turn_helix, mercury resistance CDO84_08410 SM01230 CDO84_08410 CDO84_08450 SM00860 SMI1 / KNR4 family CDO84_08470 SM00028 Tetratricopeptide repeats CDO84_08525 SM00318 Staphylococcal nuclease homologues CDO84_08535 SM01005 Alanine racemase, C-terminal domain CDO84_08655 SM00257 Lysin motif CDO84_08660 SM00857 Resolvase, N terminal domain CDO84_08670 SM00861 Transketolase, pyrimidine binding domain CDO84_08695 SM00448 cheY-homologous receiver domain CDO84_08765 SM01207 CDO84_08765 CDO84_08770 SM00881 CoA binding domain CDO84_08775 SM00387 Histidine kinase-like ATPases CDO84_08775 SM00433 TopoisomeraseII CDO84_08780 SM00434 DNA Topoisomerase IV CDO84_08795 SM01067 Cellulose binding domain CDO84_08810 SM00606 Cellulose Binding Domain Type IV CDO84_08855 SM00878 Biotin carboxylase C-terminal domain CDO84_08895 SM00823 Phosphopantetheine attachment site CDO84_08895 SM00824 Thioesterase CDO84_08900 SM00823 Phosphopantetheine attachment site CDO84_08905 SM00823 Phosphopantetheine attachment site CDO84_08905 SM01294 CDO84_08905 CDO84_08910 SM00823 Phosphopantetheine attachment site CDO84_08915 SM00823 Phosphopantetheine attachment site CDO84_08965 SM00829 Enoylreductase CDO84_08985 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CDO84_09000 SM00822 CDO84_09000 CDO84_09045 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CDO84_09070 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CDO84_09070 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDO84_09090 SM00656 CDO84_09090 CDO84_09100 SM00835 Cupin CDO84_09180 SM00860 SMI1 / KNR4 family CDO84_09190 SM00710 Parallel beta-helix repeats CDO84_09335 SM00860 SMI1 / KNR4 family CDO84_09365 SM00382 ATPases associated with a variety of cellular activities CDO84_09380 SM00822 CDO84_09380 CDO84_09400 SM00342 helix_turn_helix, arabinose operon control protein CDO84_09415 SM00849 Metallo-beta-lactamase superfamily CDO84_09420 SM00871 Bacterial transcription activator, effector binding domain CDO84_09435 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CDO84_09475 SM00421 helix_turn_helix, Lux Regulon CDO84_09475 SM00448 cheY-homologous receiver domain CDO84_09480 SM00257 Lysin motif CDO84_09485 SM00341 Helicase and RNase D C-terminal CDO84_09485 SM00487 DEAD-like helicases superfamily CDO84_09485 SM00490 helicase superfamily c-terminal domain CDO84_09485 SM00956 CDO84_09485 CDO84_09575 SM00861 Transketolase, pyrimidine binding domain CDO84_09580 SM00327 von Willebrand factor (vWF) type A domain CDO84_09585 SM00382 ATPases associated with a variety of cellular activities CDO84_09595 SM00257 Lysin motif CDO84_09690 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CDO84_09690 SM00245 tail specific protease CDO84_09725 SM00014 Acid phosphatase homologues CDO84_09770 SM00882 Coenzyme A transferase CDO84_09775 SM00882 Coenzyme A transferase CDO84_09835 SM00347 helix_turn_helix multiple antibiotic resistance protein CDO84_09875 SM00382 ATPases associated with a variety of cellular activities CDO84_09920 SM00567 E-Z type HEAT repeats CDO84_09920 SM00932 Scaffold protein Nfu/NifU N terminal CDO84_09925 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CDO84_09945 SM00357 Cold shock protein domain CDO84_09985 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CDO84_09985 SM00475 5'-3' exonuclease CDO84_10045 SM00354 helix_turn _helix lactose operon repressor CDO84_10060 SM00491 CDO84_10060 CDO84_10075 SM00981 CDO84_10075 CDO84_10105 SM00487 DEAD-like helicases superfamily CDO84_10105 SM00490 helicase superfamily c-terminal domain CDO84_10165 SM00478 endonuclease III CDO84_10165 SM00525 CDO84_10165 CDO84_10195 SM00479 CDO84_10195 CDO84_10195 SM00487 DEAD-like helicases superfamily CDO84_10195 SM00491 CDO84_10195 CDO84_10235 SM00851 MGS-like domain CDO84_10285 SM00914 CDO84_10285 CDO84_10290 SM00028 Tetratricopeptide repeats CDO84_10355 SM00138 Methyltransferase, chemotaxis proteins CDO84_10360 SM00562 CDO84_10360 CDO84_10390 SM00411 bacterial (prokaryotic) histone like domain CDO84_10440 SM01240 CDO84_10440 CDO84_10445 SM00316 Ribosomal protein S1-like RNA-binding domain CDO84_10485 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CDO84_10505 SM00257 Lysin motif CDO84_10515 SM00487 DEAD-like helicases superfamily CDO84_10515 SM00490 helicase superfamily c-terminal domain CDO84_10555 SM00091 PAS domain CDO84_10555 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDO84_10555 SM00387 Histidine kinase-like ATPases CDO84_10555 SM00388 His Kinase A (phosphoacceptor) domain CDO84_10560 SM00448 cheY-homologous receiver domain CDO84_10560 SM00862 Transcriptional regulatory protein, C terminal CDO84_10580 SM00363 S4 RNA-binding domain CDO84_10595 SM00936 Penicillin-binding protein 5, C-terminal domain CDO84_10735 SM00387 Histidine kinase-like ATPases CDO84_10745 SM00936 Penicillin-binding protein 5, C-terminal domain CDO84_10785 SM00919 Malic enzyme, NAD binding domain CDO84_10785 SM01274 CDO84_10785 CDO84_10800 SM00870 CDO84_10800 CDO84_10805 SM00530 Helix-turn-helix XRE-family like proteins CDO84_10910 SM00849 Metallo-beta-lactamase superfamily CDO84_10940 SM00849 Metallo-beta-lactamase superfamily CDO84_10950 SM01350 CDO84_10950 CDO84_11000 SM00382 ATPases associated with a variety of cellular activities CDO84_11010 SM00062 Bacterial periplasmic substrate-binding proteins CDO84_11010 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CDO84_11020 SM00046 Diacylglycerol kinase catalytic domain (presumed) CDO84_11030 SM00422 helix_turn_helix, mercury resistance CDO84_11040 SM00861 Transketolase, pyrimidine binding domain CDO84_11060 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CDO84_11070 SM00091 PAS domain CDO84_11070 SM00382 ATPases associated with a variety of cellular activities CDO84_11115 SM00646 CDO84_11115 CDO84_11135 SM00448 cheY-homologous receiver domain CDO84_11145 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CDO84_11160 SM00363 S4 RNA-binding domain CDO84_11165 SM00861 Transketolase, pyrimidine binding domain CDO84_11200 SM00878 Biotin carboxylase C-terminal domain CDO84_11245 SM00382 ATPases associated with a variety of cellular activities CDO84_11255 SM00841 Elongation factor P, C-terminal CDO84_11255 SM01185 CDO84_11255 CDO84_11290 SM00529 Helix-turn-helix diphteria tox regulatory element CDO84_11300 SM00450 Rhodanese Homology Domain CDO84_11320 SM00487 DEAD-like helicases superfamily CDO84_11320 SM00490 helicase superfamily c-terminal domain CDO84_11335 SM00530 Helix-turn-helix XRE-family like proteins CDO84_11395 SM00382 ATPases associated with a variety of cellular activities CDO84_11405 SM00116 Domain in cystathionine beta-synthase and other proteins. CDO84_11415 SM01091 Transporter associated domain CDO84_11440 SM00849 Metallo-beta-lactamase superfamily CDO84_11460 SM00631 CDO84_11460 CDO84_11480 SM00028 Tetratricopeptide repeats CDO84_11520 SM00382 ATPases associated with a variety of cellular activities CDO84_11525 SM00382 ATPases associated with a variety of cellular activities CDO84_11570 SM00257 Lysin motif CDO84_11605 SM00518 AP endonuclease family 2 CDO84_11610 SM00487 DEAD-like helicases superfamily CDO84_11610 SM00490 helicase superfamily c-terminal domain CDO84_11650 SM00400 zinc finger CDO84_11650 SM00493 CDO84_11650 CDO84_11665 SM00116 Domain in cystathionine beta-synthase and other proteins. CDO84_11710 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CDO84_11760 SM00729 Elongator protein 3, MiaB family, Radical SAM CDO84_11775 SM00271 DnaJ molecular chaperone homology domain CDO84_11795 SM00729 Elongator protein 3, MiaB family, Radical SAM CDO84_11800 SM00838 Elongation factor G C-terminus CDO84_11835 SM00849 Metallo-beta-lactamase superfamily CDO84_11845 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CDO84_11865 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CDO84_11875 SM01103 CDO84_11875 CDO84_11930 SM00857 Resolvase, N terminal domain CDO84_11945 SM00829 Enoylreductase CDO84_11980 SM00028 Tetratricopeptide repeats CDO84_12015 SM00028 Tetratricopeptide repeats CDO84_12040 SM00860 SMI1 / KNR4 family CDO84_12060 SM00257 Lysin motif CDO84_12060 SM00644 CDO84_12060 CDO84_12120 SM00257 Lysin motif CDO84_12265 SM00382 ATPases associated with a variety of cellular activities CDO84_12295 SM00530 Helix-turn-helix XRE-family like proteins CDO84_12305 SM00530 Helix-turn-helix XRE-family like proteins CDO84_12310 SM00530 Helix-turn-helix XRE-family like proteins CDO84_12350 SM00028 Tetratricopeptide repeats CDO84_12435 SM00450 Rhodanese Homology Domain CDO84_12440 SM00450 Rhodanese Homology Domain CDO84_12475 SM00422 helix_turn_helix, mercury resistance CDO84_12495 SM01092 CO dehydrogenase flavoprotein C-terminal domain CDO84_12500 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CDO84_12590 SM00345 helix_turn_helix gluconate operon transcriptional repressor CDO84_12590 SM00895 CDO84_12590 CDO84_12600 SM00822 CDO84_12600 CDO84_12605 SM00861 Transketolase, pyrimidine binding domain CDO84_12620 SM00347 helix_turn_helix multiple antibiotic resistance protein CDO84_12650 SM00287 Bacterial SH3 domain homologues CDO84_12690 SM00640 Glycosyl hydrolases family 32 CDO84_12715 SM00382 ATPases associated with a variety of cellular activities CDO84_12785 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CDO84_12785 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CDO84_12815 SM00650 Ribosomal RNA adenine dimethylases CDO84_12870 SM00732 Likely ribonuclease with RNase H fold. CDO84_12880 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CDO84_12905 SM00382 ATPases associated with a variety of cellular activities CDO84_12910 SM00028 Tetratricopeptide repeats CDO84_12930 SM00382 ATPases associated with a variety of cellular activities CDO84_12960 SM00287 Bacterial SH3 domain homologues CDO84_12960 SM00646 CDO84_12960 CDO84_12970 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CDO84_12970 SM00954 Region found in RelA / SpoT proteins CDO84_13020 SM01323 CDO84_13020 CDO84_13040 SM00382 ATPases associated with a variety of cellular activities CDO84_13045 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CDO84_13090 SM00257 Lysin motif CDO84_13135 SM01317 CDO84_13135 CDO84_13230 SM00257 Lysin motif CDO84_13240 SM01004 Delta-aminolevulinic acid dehydratase CDO84_13275 SM00382 ATPases associated with a variety of cellular activities CDO84_13275 SM00464 Found in ATP-dependent protease La (LON) CDO84_13280 SM00382 ATPases associated with a variety of cellular activities CDO84_13285 SM00382 ATPases associated with a variety of cellular activities CDO84_13285 SM00994 ClpX C4-type zinc finger CDO84_13285 SM01086 C-terminal, D2-small domain, of ClpB protein CDO84_13310 SM01329 CDO84_13310 CDO84_13315 SM00917 LeuA allosteric (dimerisation) domain CDO84_13375 SM00487 DEAD-like helicases superfamily CDO84_13375 SM00490 helicase superfamily c-terminal domain CDO84_13405 SM00909 Sporulation and spore germination CDO84_13415 SM00347 helix_turn_helix multiple antibiotic resistance protein CDO84_13420 SM00421 helix_turn_helix, Lux Regulon CDO84_13460 SM00465 GIY-YIG type nucleases (URI domain) CDO84_13475 SM00813 Alpha-L-arabinofuranosidase C-terminus CDO84_13480 SM00893 Electron transfer flavoprotein domain CDO84_13485 SM00893 Electron transfer flavoprotein domain CDO84_13510 SM00463 Small MutS-related domain CDO84_13510 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CDO84_13510 SM00534 ATPase domain of DNA mismatch repair MUTS family CDO84_13515 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CDO84_13515 SM00481 DNA polymerase alpha chain like domain CDO84_13515 SM00483 DNA polymerase X family CDO84_13535 SM00873 B3/4 domain CDO84_13535 SM00874 tRNA synthetase B5 domain CDO84_13535 SM00896 Ferredoxin-fold anticodon binding domain CDO84_13550 SM00967 RNA 2'-O ribose methyltransferase substrate binding CDO84_13605 SM00813 Alpha-L-arabinofuranosidase C-terminus CDO84_13635 SM01007 Class II Aldolase and Adducin N-terminal domain CDO84_13700 SM00448 cheY-homologous receiver domain CDO84_13700 SM00850 LytTr DNA-binding domain CDO84_13705 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CDO84_13705 SM00387 Histidine kinase-like ATPases CDO84_13715 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CDO84_13730 SM00382 ATPases associated with a variety of cellular activities CDO84_13750 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CDO84_13780 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CDO84_13780 SM01232 CDO84_13780 CDO84_13785 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CDO84_13785 SM00474 3'-5' exonuclease CDO84_13785 SM00475 5'-3' exonuclease CDO84_13785 SM00482 DNA polymerase A domain CDO84_13790 SM00091 PAS domain CDO84_13790 SM00387 Histidine kinase-like ATPases CDO84_13790 SM00388 His Kinase A (phosphoacceptor) domain CDO84_13795 SM00448 cheY-homologous receiver domain CDO84_13795 SM00862 Transcriptional regulatory protein, C terminal CDO84_13805 SM01329 CDO84_13805 CDO84_13850 SM00919 Malic enzyme, NAD binding domain CDO84_13850 SM01274 CDO84_13850 CDO84_13855 SM00481 DNA polymerase alpha chain like domain CDO84_13885 SM00116 Domain in cystathionine beta-synthase and other proteins. CDO84_13890 SM00849 Metallo-beta-lactamase superfamily CDO84_13915 SM00852 Probable molybdopterin binding domain CDO84_13980 SM00981 CDO84_13980 CDO84_14010 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CDO84_14015 SM00267 diguanylate cyclase CDO84_14025 SM00363 S4 RNA-binding domain CDO84_14025 SM01390 CDO84_14025 CDO84_14030 SM00363 S4 RNA-binding domain CDO84_14050 SM00116 Domain in cystathionine beta-synthase and other proteins. CDO84_14070 SM00354 helix_turn _helix lactose operon repressor CDO84_14075 SM00830 Chorismate mutase type II CDO84_14100 SM00382 ATPases associated with a variety of cellular activities CDO84_14100 SM00843 CDO84_14100 CDO84_14135 SM00919 Malic enzyme, NAD binding domain CDO84_14135 SM01274 CDO84_14135 CDO84_14140 SM00849 Metallo-beta-lactamase superfamily CDO84_14160 SM00642 Alpha-amylase domain CDO84_14165 SM00046 Diacylglycerol kinase catalytic domain (presumed) CDO84_14200 SM00382 ATPases associated with a variety of cellular activities CDO84_14205 SM00420 helix_turn_helix, Deoxyribose operon repressor CDO84_14210 SM00363 S4 RNA-binding domain CDO84_14260 SM00342 helix_turn_helix, arabinose operon control protein CDO84_14285 SM00729 Elongator protein 3, MiaB family, Radical SAM CDO84_14285 SM00876 Biotin and Thiamin Synthesis associated domain CDO84_14320 SM00354 helix_turn _helix lactose operon repressor CDO84_14345 SM00450 Rhodanese Homology Domain CDO84_14360 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CDO84_14360 SM00091 PAS domain CDO84_14380 SM00382 ATPases associated with a variety of cellular activities CDO84_14385 SM00387 Histidine kinase-like ATPases CDO84_14390 SM00448 cheY-homologous receiver domain CDO84_14390 SM00862 Transcriptional regulatory protein, C terminal CDO84_14400 SM00382 ATPases associated with a variety of cellular activities CDO84_14415 SM00382 ATPases associated with a variety of cellular activities CDO84_14420 SM00345 helix_turn_helix gluconate operon transcriptional repressor CDO84_14430 SM00729 Elongator protein 3, MiaB family, Radical SAM CDO84_14490 SM00382 ATPases associated with a variety of cellular activities CDO84_14535 SM01234 CDO84_14535 CDO84_14540 SM00947 Carbonic anhydrase CDO84_14575 SM00382 ATPases associated with a variety of cellular activities CDO84_14585 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CDO84_14630 SM00984 UDP binding domain CDO84_14690 SM00642 Alpha-amylase domain CDO84_14825 SM00244 prohibitin homologues CDO84_14880 SM00047 Lysozyme subfamily 2 CDO84_14935 SM00420 helix_turn_helix, Deoxyribose operon repressor CDO84_14935 SM01134 CDO84_14935 CDO84_14940 SM01007 Class II Aldolase and Adducin N-terminal domain CDO84_14950 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CDO84_14950 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDO84_14950 SM00319 Homologues of the ligand binding domain of Tar CDO84_14955 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CDO84_14955 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDO84_14955 SM00319 Homologues of the ligand binding domain of Tar CDO84_14960 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CDO84_14960 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDO84_14960 SM00319 Homologues of the ligand binding domain of Tar CDO84_14965 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CDO84_14965 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDO84_14965 SM00319 Homologues of the ligand binding domain of Tar CDO84_14985 SM00642 Alpha-amylase domain CDO84_14990 SM01091 Transporter associated domain CDO84_15045 SM00316 Ribosomal protein S1-like RNA-binding domain CDO84_15055 SM00344 helix_turn_helix ASNC type CDO84_15075 SM00387 Histidine kinase-like ATPases CDO84_15075 SM00388 His Kinase A (phosphoacceptor) domain CDO84_15080 SM01298 CDO84_15080 CDO84_15085 SM00479 CDO84_15085 CDO84_15115 SM00091 PAS domain CDO84_15115 SM00387 Histidine kinase-like ATPases CDO84_15120 SM00448 cheY-homologous receiver domain CDO84_15130 SM00382 ATPases associated with a variety of cellular activities CDO84_15195 SM00421 helix_turn_helix, Lux Regulon CDO84_15195 SM00448 cheY-homologous receiver domain CDO84_15200 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CDO84_15200 SM00387 Histidine kinase-like ATPases CDO84_15225 SM00052 Putative diguanylate phosphodiesterase CDO84_15270 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CDO84_15315 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CDO84_15315 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CDO84_15325 SM00923 MbtH-like protein CDO84_15330 SM00823 Phosphopantetheine attachment site CDO84_15330 SM00824 Thioesterase CDO84_15415 SM01240 CDO84_15415 CDO84_15515 SM00729 Elongator protein 3, MiaB family, Radical SAM CDO84_15635 SM00862 Transcriptional regulatory protein, C terminal CDO84_15640 SM00382 ATPases associated with a variety of cellular activities CDO84_15660 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CDO84_15700 SM00382 ATPases associated with a variety of cellular activities CDO84_15705 SM00345 helix_turn_helix gluconate operon transcriptional repressor CDO84_15705 SM00866 CDO84_15705 CDO84_15735 SM00465 GIY-YIG type nucleases (URI domain) CDO84_15775 SM00382 ATPases associated with a variety of cellular activities CDO84_15805 SM00382 ATPases associated with a variety of cellular activities CDO84_15805 SM00930 CDO84_15805 CDO84_15820 SM00493 CDO84_15820 CDO84_15875 SM00347 helix_turn_helix multiple antibiotic resistance protein CDO84_15905 SM00382 ATPases associated with a variety of cellular activities CDO84_15925 SM00382 ATPases associated with a variety of cellular activities CDO84_15975 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CDO84_15980 SM00448 cheY-homologous receiver domain CDO84_15980 SM00862 Transcriptional regulatory protein, C terminal CDO84_15985 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDO84_15985 SM00387 Histidine kinase-like ATPases CDO84_15985 SM00388 His Kinase A (phosphoacceptor) domain CDO84_16025 SM00421 helix_turn_helix, Lux Regulon CDO84_16025 SM00448 cheY-homologous receiver domain CDO84_16030 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDO84_16030 SM00387 Histidine kinase-like ATPases CDO84_16065 SM00382 ATPases associated with a variety of cellular activities CDO84_16090 SM00387 Histidine kinase-like ATPases CDO84_16090 SM00388 His Kinase A (phosphoacceptor) domain CDO84_16095 SM00448 cheY-homologous receiver domain CDO84_16095 SM00862 Transcriptional regulatory protein, C terminal CDO84_16115 SM00835 Cupin CDO84_16130 SM00382 ATPases associated with a variety of cellular activities CDO84_16140 SM00382 ATPases associated with a variety of cellular activities CDO84_16315 SM00316 Ribosomal protein S1-like RNA-binding domain CDO84_16315 SM00357 Cold shock protein domain CDO84_16315 SM00955 CDO84_16315 CDO84_16335 SM00530 Helix-turn-helix XRE-family like proteins CDO84_16340 SM00530 Helix-turn-helix XRE-family like proteins CDO84_16345 SM00530 Helix-turn-helix XRE-family like proteins CDO84_16355 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CDO84_16355 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDO84_16375 SM00116 Domain in cystathionine beta-synthase and other proteins. CDO84_16375 SM00382 ATPases associated with a variety of cellular activities CDO84_16400 SM00116 Domain in cystathionine beta-synthase and other proteins. CDO84_16400 SM00382 ATPases associated with a variety of cellular activities CDO84_16440 SM01192 CDO84_16440 CDO84_16440 SM01193 CDO84_16440 CDO84_16460 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CDO84_16475 SM00345 helix_turn_helix gluconate operon transcriptional repressor CDO84_16505 SM00636 CDO84_16505 CDO84_16525 SM00421 helix_turn_helix, Lux Regulon CDO84_16525 SM00448 cheY-homologous receiver domain CDO84_16540 SM00382 ATPases associated with a variety of cellular activities CDO84_16550 SM00331 Sigma factor PP2C-like phosphatases CDO84_16580 SM00354 helix_turn _helix lactose operon repressor CDO84_16585 SM00345 helix_turn_helix gluconate operon transcriptional repressor CDO84_16585 SM00895 CDO84_16585 CDO84_16680 SM00530 Helix-turn-helix XRE-family like proteins CDO84_16720 SM00640 Glycosyl hydrolases family 32 CDO84_16765 SM00642 Alpha-amylase domain CDO84_16795 SM00642 Alpha-amylase domain CDO84_16800 SM00354 helix_turn _helix lactose operon repressor CDO84_16820 SM00947 Carbonic anhydrase CDO84_16835 SM00382 ATPases associated with a variety of cellular activities CDO84_16840 SM00387 Histidine kinase-like ATPases CDO84_16840 SM00388 His Kinase A (phosphoacceptor) domain CDO84_16845 SM00448 cheY-homologous receiver domain CDO84_16845 SM00862 Transcriptional regulatory protein, C terminal CDO84_16900 SM00028 Tetratricopeptide repeats CDO84_16905 SM00382 ATPases associated with a variety of cellular activities CDO84_17030 SM00345 helix_turn_helix gluconate operon transcriptional repressor CDO84_17030 SM00866 CDO84_17030 CDO84_17070 SM00382 ATPases associated with a variety of cellular activities CDO84_17075 SM00487 DEAD-like helicases superfamily CDO84_17075 SM00490 helicase superfamily c-terminal domain CDO84_17100 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CDO84_17110 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CDO84_17110 SM00245 tail specific protease CDO84_17120 SM00382 ATPases associated with a variety of cellular activities CDO84_17140 SM00957 SecA DEAD-like domain CDO84_17140 SM00958 SecA preprotein cross-linking domain CDO84_17230 SM00487 DEAD-like helicases superfamily CDO84_17230 SM00490 helicase superfamily c-terminal domain CDO84_17240 SM00421 helix_turn_helix, Lux Regulon CDO84_17240 SM00448 cheY-homologous receiver domain CDO84_17245 SM00387 Histidine kinase-like ATPases CDO84_17285 SM00984 UDP binding domain CDO84_17305 SM00646 CDO84_17305 CDO84_17365 SM00382 ATPases associated with a variety of cellular activities CDO84_17405 SM00047 Lysozyme subfamily 2 CDO84_17405 SM00287 Bacterial SH3 domain homologues CDO84_17455 SM00854 Bacterial capsule synthesis protein PGA_cap CDO84_17470 SM00354 helix_turn _helix lactose operon repressor CDO84_17485 SM00382 ATPases associated with a variety of cellular activities CDO84_17500 SM00287 Bacterial SH3 domain homologues CDO84_17555 SM00903 Flavin reductase like domain CDO84_17570 SM00344 helix_turn_helix ASNC type CDO84_17635 SM00984 UDP binding domain CDO84_17665 SM00487 DEAD-like helicases superfamily CDO84_17665 SM00490 helicase superfamily c-terminal domain CDO84_17675 SM00420 helix_turn_helix, Deoxyribose operon repressor CDO84_17675 SM01134 CDO84_17675 CDO84_17705 SM00448 cheY-homologous receiver domain CDO84_17705 SM00862 Transcriptional regulatory protein, C terminal CDO84_17710 SM00387 Histidine kinase-like ATPases CDO84_17710 SM00388 His Kinase A (phosphoacceptor) domain CDO84_17710 SM00448 cheY-homologous receiver domain CDO84_17725 SM00028 Tetratricopeptide repeats CDO84_17755 SM00347 helix_turn_helix multiple antibiotic resistance protein CDO84_17765 SM00710 Parallel beta-helix repeats CDO84_17765 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses CDO84_17795 SM00938 Nitrogen regulatory protein P-II CDO84_17800 SM00014 Acid phosphatase homologues CDO84_17830 SM00155 Phospholipase D. Active site motifs. CDO84_17835 SM00422 helix_turn_helix, mercury resistance CDO84_17890 SM00028 Tetratricopeptide repeats CDO84_17895 SM00729 Elongator protein 3, MiaB family, Radical SAM CDO84_17910 SM00327 von Willebrand factor (vWF) type A domain CDO84_17915 SM00327 von Willebrand factor (vWF) type A domain CDO84_17950 SM00382 ATPases associated with a variety of cellular activities CDO84_18010 SM00226 Low molecular weight phosphatase family CDO84_18050 SM00937 CDO84_18050 CDO84_18070 SM00919 Malic enzyme, NAD binding domain CDO84_18070 SM01274 CDO84_18070 CDO84_18085 SM00357 Cold shock protein domain CDO84_18085 SM00382 ATPases associated with a variety of cellular activities CDO84_18085 SM00959 Rho termination factor, N-terminal domain CDO84_18110 SM00448 cheY-homologous receiver domain CDO84_18140 SM00155 Phospholipase D. Active site motifs. CDO84_18160 SM00382 ATPases associated with a variety of cellular activities CDO84_18165 SM00155 Phospholipase D. Active site motifs. CDO84_18190 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CDO84_18205 SM00100 Cyclic nucleotide-monophosphate binding domain CDO84_18205 SM00419 helix_turn_helix, cAMP Regulatory protein CDO84_18215 SM00836 DALR anticodon binding domain CDO84_18215 SM01016 Arginyl tRNA synthetase N terminal dom CDO84_18235 SM00729 Elongator protein 3, MiaB family, Radical SAM CDO84_18285 SM00028 Tetratricopeptide repeats CDO84_18335 SM00347 helix_turn_helix multiple antibiotic resistance protein CDO84_18340 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CDO84_18365 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CDO84_18460 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CDO84_18500 SM00858 CDO84_18500 CDO84_18555 SM00986 Uracil DNA glycosylase superfamily CDO84_18555 SM00987 UreE urease accessory protein, C-terminal domain CDO84_18590 SM00640 Glycosyl hydrolases family 32 CDO84_18605 SM01061 CAT RNA binding domain CDO84_18760 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CDO84_18800 SM01061 CAT RNA binding domain CDO84_18815 SM00347 helix_turn_helix multiple antibiotic resistance protein CDO84_18820 SM00363 S4 RNA-binding domain CDO84_18830 SM00530 Helix-turn-helix XRE-family like proteins CDO84_18845 SM00954 Region found in RelA / SpoT proteins CDO84_18925 SM01060 CDO84_18925 CDO84_18940 SM00382 ATPases associated with a variety of cellular activities CDO84_18975 SM00382 ATPases associated with a variety of cellular activities CDO84_18980 SM00382 ATPases associated with a variety of cellular activities CDO84_19020 SM00382 ATPases associated with a variety of cellular activities CDO84_19055 SM00387 Histidine kinase-like ATPases CDO84_19060 SM00421 helix_turn_helix, Lux Regulon CDO84_19060 SM00448 cheY-homologous receiver domain CDO84_19095 SM00882 Coenzyme A transferase CDO84_19100 SM00882 Coenzyme A transferase CDO84_19135 SM01060 CDO84_19135 CDO84_19150 SM01061 CAT RNA binding domain CDO84_19165 SM00487 DEAD-like helicases superfamily CDO84_19165 SM00490 helicase superfamily c-terminal domain CDO84_19355 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CDO84_19365 SM01133 CDO84_19365 CDO84_19395 SM00382 ATPases associated with a variety of cellular activities CDO84_19405 SM00062 Bacterial periplasmic substrate-binding proteins CDO84_19470 SM00382 ATPases associated with a variety of cellular activities CDO84_19475 SM00387 Histidine kinase-like ATPases CDO84_19480 SM00448 cheY-homologous receiver domain CDO84_19480 SM00862 Transcriptional regulatory protein, C terminal CDO84_19535 SM00420 helix_turn_helix, Deoxyribose operon repressor CDO84_19535 SM01134 CDO84_19535 CDO84_19575 SM00387 Histidine kinase-like ATPases CDO84_19600 SM00382 ATPases associated with a variety of cellular activities CDO84_19630 SM00564 beta-propeller repeat CDO84_19665 SM00347 helix_turn_helix multiple antibiotic resistance protein CDO84_19695 SM00345 helix_turn_helix gluconate operon transcriptional repressor CDO84_19695 SM00895 CDO84_19695 CDO84_19710 SM01350 CDO84_19710 CDO84_19740 SM00345 helix_turn_helix gluconate operon transcriptional repressor CDO84_19740 SM00866 CDO84_19740 CDO84_19845 SM00752 Horizontally Transferred TransMembrane Domain CDO84_19860 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CDO84_19865 SM00091 PAS domain CDO84_19865 SM00382 ATPases associated with a variety of cellular activities CDO84_19870 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDO84_19870 SM00387 Histidine kinase-like ATPases CDO84_19870 SM00388 His Kinase A (phosphoacceptor) domain CDO84_19875 SM00448 cheY-homologous receiver domain CDO84_19875 SM00862 Transcriptional regulatory protein, C terminal CDO84_19885 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CDO84_19890 SM00849 Metallo-beta-lactamase superfamily CDO84_19905 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CDO84_19905 SM00091 PAS domain CDO84_19905 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CDO84_19905 SM00387 Histidine kinase-like ATPases CDO84_19905 SM00388 His Kinase A (phosphoacceptor) domain CDO84_19910 SM00448 cheY-homologous receiver domain CDO84_19910 SM00862 Transcriptional regulatory protein, C terminal CDO84_19935 SM00788 Adenylosuccinate synthetase CDO84_19945 SM00382 ATPases associated with a variety of cellular activities CDO84_19980 SM00267 diguanylate cyclase CDO84_20005 SM01131 CDO84_20005 CDO84_20085 SM00849 Metallo-beta-lactamase superfamily CDO84_20090 SM00347 helix_turn_helix multiple antibiotic resistance protein CDO84_20135 SM00422 helix_turn_helix, mercury resistance CDO84_20160 SM01266 CDO84_20160 CDO84_20170 SM00354 helix_turn _helix lactose operon repressor CDO84_20200 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CDO84_20220 SM00470 ParB-like nuclease domain CDO84_20235 SM00470 ParB-like nuclease domain CDO84_20245 SM01228 CDO84_20245 CDO84_20255 SM00393 Putative single-stranded nucleic acids-binding domain CDO84_20255 SM01245 CDO84_20255 CDO84_20275 SM00382 ATPases associated with a variety of cellular activities CDO84_20275 SM00760 Bacterial dnaA protein helix-turn-helix domain CDO84_20280 SM00480 DNA polymerase III beta subunit CDO84_20300 SM00387 Histidine kinase-like ATPases CDO84_20300 SM00433 TopoisomeraseII CDO84_20305 SM00434 DNA Topoisomerase IV CDO84_20340 SM00116 Domain in cystathionine beta-synthase and other proteins. CDO84_20340 SM01240 CDO84_20340 CDO84_20345 SM00936 Penicillin-binding protein 5, C-terminal domain CDO84_20380 SM00257 Lysin motif CDO84_20380 SM00636 CDO84_20380 CDO84_20400 SM00382 ATPases associated with a variety of cellular activities CDO84_20410 SM00493 CDO84_20410 CDO84_20505 SM00465 GIY-YIG type nucleases (URI domain) CDO84_20515 SM00966 SpoVT / AbrB like domain CDO84_20530 SM01208 CDO84_20530 CDO84_20535 SM00493 CDO84_20535 CDO84_20540 SM00650 Ribosomal RNA adenine dimethylases CDO84_20590 SM01400 CDO84_20590 CDO84_20610 SM00487 DEAD-like helicases superfamily CDO84_20610 SM00490 helicase superfamily c-terminal domain CDO84_20610 SM00982 CDO84_20610 CDO84_20610 SM01058 CarD-like/TRCF domain CDO84_20615 SM00966 SpoVT / AbrB like domain CDO84_20630 SM00363 S4 RNA-binding domain CDO84_20650 SM00316 Ribosomal protein S1-like RNA-binding domain CDO84_20665 SM00331 Sigma factor PP2C-like phosphatases CDO84_20665 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CDO84_20675 SM00220 Serine/Threonine protein kinases, catalytic domain CDO84_20680 SM00977 TilS substrate C-terminal domain CDO84_20690 SM00382 ATPases associated with a variety of cellular activities CDO84_20735 SM00905 Dihydroneopterin aldolase CDO84_20745 SM00530 Helix-turn-helix XRE-family like proteins CDO84_20855 SM00382 ATPases associated with a variety of cellular activities CDO84_20855 SM01086 C-terminal, D2-small domain, of ClpB protein CDO84_20860 SM00382 ATPases associated with a variety of cellular activities CDO84_20870 SM00670 Large family of predicted nucleotide-binding domains CDO84_20895 SM00840 CDO84_20895 CDO84_20900 SM00535 Ribonuclease III family CDO84_20905 SM00967 RNA 2'-O ribose methyltransferase substrate binding CDO84_20930 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CDO84_20930 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CDO84_20935 SM00649 Ribosomal protein L11/L12 CDO84_20965 SM00663 RNA polymerase I subunit A N-terminus CDO84_20985 SM00838 Elongation factor G C-terminus CDO84_20985 SM00889 Elongation factor G, domain IV CDO84_21000 SM01403 CDO84_21000 CDO84_21020 SM01382 CDO84_21020 CDO84_21020 SM01383 CDO84_21020 CDO84_21035 SM00322 K homology RNA-binding domain CDO84_21055 SM01374 CDO84_21055 CDO84_21060 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CDO84_21125 SM00316 Ribosomal protein S1-like RNA-binding domain CDO84_21145 SM00662 RNA polymerases D CDO84_21155 SM00382 ATPases associated with a variety of cellular activities CDO84_21160 SM00382 ATPases associated with a variety of cellular activities CDO84_21195 SM00646 CDO84_21195 CDO84_21210 SM01251 CDO84_21210