locus-tag class description M655_000015 PF01171 PP-loop family M655_000015 PF11734 TilS substrate C-terminal domain M655_000015 PF09179 TilS substrate binding domain M655_000020 PF06738 Putative threonine/serine exporter M655_000020 PF12821 Threonine/Serine exporter, ThrE M655_000030 PF00069 Protein kinase domain M655_000035 PF00092 von Willebrand factor type A domain M655_000040 PF07228 Stage II sporulation protein E (SpoIIE) M655_000045 PF00575 S1 RNA binding domain M655_000060 PF07873 YabP family M655_000070 PF12793 Sugar transport-related sRNA regulator N-term M655_000070 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M655_000075 PF07690 Major Facilitator Superfamily M655_000085 PF01479 S4 domain M655_000090 PF03819 MazG nucleotide pyrophosphohydrolase domain M655_000090 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M655_000095 PF01943 Polysaccharide biosynthesis protein M655_000095 PF14667 Polysaccharide biosynthesis C-terminal domain M655_000100 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin M655_000100 PF15714 Stage V sporulation protein T C-terminal, transcription factor M655_000105 PF05698 Bacterial trigger factor protein (TF) C-terminus M655_000110 PF00270 DEAD/DEAH box helicase M655_000110 PF17757 UvrB interaction domain M655_000110 PF03461 TRCF domain M655_000110 PF00271 Helicase conserved C-terminal domain M655_000110 PF02559 CarD-like/TRCF domain M655_000120 PF01195 Peptidyl-tRNA hydrolase M655_000125 PF14693 Ribosomal protein TL5, C-terminal domain M655_000125 PF01386 Ribosomal L25p family M655_000130 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase M655_000130 PF14572 Phosphoribosyl synthetase-associated domain M655_000135 PF12804 MobA-like NTP transferase domain M655_000135 PF00132 Bacterial transferase hexapeptide (six repeats) M655_000140 PF07683 Cobalamin synthesis protein cobW C-terminal domain M655_000140 PF02492 CobW/HypB/UreG, nucleotide-binding domain M655_000145 PF04026 SpoVG M655_000150 PF01042 Endoribonuclease L-PSP M655_000155 PF00156 Phosphoribosyl transferase domain M655_000155 PF09182 Bacterial purine repressor, N-terminal M655_000160 PF08544 GHMP kinases C terminal M655_000160 PF00288 GHMP kinases N terminal domain M655_000165 PF00269 Small, acid-soluble spore proteins, alpha/beta type M655_000170 PF06257 Biofilm formation stimulator VEG M655_000175 PF00398 Ribosomal RNA adenine dimethylase M655_000180 PF13662 Toprim domain M655_000180 PF13331 Domain of unknown function (DUF4093) M655_000185 PF06725 3D domain M655_000185 PF01476 LysM domain M655_000190 PF01026 TatD related DNase M655_000195 PF09334 tRNA synthetases class I (M) M655_000195 PF08264 Anticodon-binding domain of tRNA M655_000195 PF01588 Putative tRNA binding domain M655_000200 PF18277 AbrB C-terminal domain M655_000200 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin M655_000205 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M655_000210 PF01541 GIY-YIG catalytic domain M655_000215 PF05175 Methyltransferase small domain M655_000220 PF06156 Initiation control protein YabA M655_000225 PF04468 PSP1 C-terminal conserved region M655_000230 PF09115 DNA polymerase III, delta subunit, C terminal M655_000235 PF03885 Protein of unknown function (DUF327) M655_000240 PF06153 Cyclic-di-AMP receptor M655_000245 PF02223 Thymidylate kinase M655_000250 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain M655_000250 PF01276 Orn/Lys/Arg decarboxylase, major domain M655_000260 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M655_000260 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M655_000260 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M655_000270 PF07441 SigmaK-factor processing regulatory protein BofA M655_000290 PF13662 Toprim domain M655_000290 PF02132 RecR protein M655_000295 PF02575 YbaB/EbfC DNA-binding family M655_000300 PF12169 DNA polymerase III subunits gamma and tau domain III M655_000305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_000305 PF00512 His Kinase A (phospho-acceptor) domain M655_000305 PF00989 PAS fold M655_000315 PF01966 HD domain M655_000325 PF09335 SNARE associated Golgi protein M655_000340 PF13460 NAD(P)H-binding M655_000345 PF00899 ThiF family M655_000345 PF00581 Rhodanese-like domain M655_000350 PF02583 Metal-sensitive transcriptional repressor M655_000355 PF13686 DsrE/DsrF/DrsH-like family M655_000360 PF01925 Sulfite exporter TauE/SafE M655_000365 PF01206 Sulfurtransferase TusA M655_000370 PF00753 Metallo-beta-lactamase superfamily M655_000370 PF00581 Rhodanese-like domain M655_000375 PF01206 Sulfurtransferase TusA M655_000375 PF00581 Rhodanese-like domain M655_000395 PF01479 S4 domain M655_000395 PF00849 RNA pseudouridylate synthase M655_000400 PF14437 MafB19-like deaminase M655_000410 PF03123 CAT RNA binding domain M655_000410 PF00874 PRD domain M655_000415 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M655_000420 PF00381 PTS HPr component phosphorylation site M655_000425 PF00391 PEP-utilising enzyme, mobile domain M655_000425 PF02896 PEP-utilising enzyme, TIM barrel domain M655_000425 PF05524 PEP-utilising enzyme, N-terminal M655_000430 PF00367 phosphotransferase system, EIIB M655_000430 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 M655_000430 PF02378 Phosphotransferase system, EIIC M655_000445 PF01381 Helix-turn-helix M655_000450 PF01638 HxlR-like helix-turn-helix M655_000455 PF07681 DoxX M655_000480 PF02811 PHP domain M655_000485 PF08220 DeoR-like helix-turn-helix domain M655_000485 PF00455 DeoR C terminal sensor domain M655_000490 PF00005 ABC transporter M655_000490 PF08402 TOBE domain M655_000495 PF00528 Binding-protein-dependent transport system inner membrane component M655_000500 PF00528 Binding-protein-dependent transport system inner membrane component M655_000515 PF00463 Isocitrate lyase family M655_000520 PF01274 Malate synthase M655_000525 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M655_000525 PF02403 Seryl-tRNA synthetase N-terminal domain M655_000530 PF01174 SNO glutamine amidotransferase family M655_000535 PF01680 SOR/SNZ family M655_000540 PF07943 Penicillin-binding protein 5, C-terminal domain M655_000540 PF00768 D-alanyl-D-alanine carboxypeptidase M655_000550 PF00478 IMP dehydrogenase / GMP reductase domain M655_000550 PF00571 CBS domain M655_000555 PF14175 YaaC-like Protein M655_000570 PF09335 SNARE associated Golgi protein M655_000575 PF01979 Amidohydrolase family M655_000585 PF00072 Response regulator receiver domain M655_000590 PF00521 DNA gyrase/topoisomerase IV, subunit A M655_000590 PF03989 DNA gyrase C-terminal domain, beta-propeller M655_000595 PF07690 Major Facilitator Superfamily M655_000620 PF09335 SNARE associated Golgi protein M655_000625 PF01979 Amidohydrolase family M655_000755 PF00204 DNA gyrase B M655_000755 PF00986 DNA gyrase B subunit, carboxyl terminus M655_000755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_000755 PF01751 Toprim domain M655_000760 PF04025 Domain of unknown function (DUF370) M655_000765 PF02463 RecF/RecN/SMC N terminal domain M655_000775 PF00712 DNA polymerase III beta subunit, N-terminal domain M655_000775 PF02768 DNA polymerase III beta subunit, C-terminal domain M655_000775 PF02767 DNA polymerase III beta subunit, central domain M655_000780 PF11638 DnaA N-terminal domain M655_000780 PF00308 Bacterial dnaA protein M655_000780 PF08299 Bacterial dnaA protein helix-turn-helix M655_000785 PF00468 Ribosomal protein L34 M655_000795 PF00825 Ribonuclease P M655_000800 PF01809 Putative membrane protein insertion efficiency factor M655_000805 PF02096 60Kd inner membrane protein M655_000810 PF01424 R3H domain M655_000810 PF14804 Jag N-terminus M655_000815 PF01926 50S ribosome-binding GTPase M655_000815 PF12631 MnmE helical domain M655_000815 PF10396 GTP-binding protein TrmE N-terminus M655_000820 PF13932 GidA associated domain M655_000820 PF01134 Glucose inhibited division protein A M655_000825 PF02527 rRNA small subunit methyltransferase G M655_000830 PF02308 MgtC family M655_000835 PF02195 ParB-like nuclease domain M655_000835 PF17762 HTH domain found in ParB protein M655_000840 PF13614 AAA domain M655_000845 PF02195 ParB-like nuclease domain M655_000845 PF17762 HTH domain found in ParB protein M655_000850 PF00266 Aminotransferase class-V M655_000855 PF04474 Protein of unknown function (DUF554) M655_000860 PF00781 Diacylglycerol kinase catalytic domain M655_000865 PF06866 Protein of unknown function (DUF1256) M655_000875 PF00924 Mechanosensitive ion channel M655_000880 PF06107 Bacterial protein of unknown function (DUF951) M655_000895 PF01432 Peptidase family M3 M655_000895 PF08439 Oligopeptidase F M655_000910 PF13460 NAD(P)H-binding M655_000915 PF06071 Protein of unknown function (DUF933) M655_000915 PF01926 50S ribosome-binding GTPase M655_000920 PF01250 Ribosomal protein S6 M655_000925 PF00436 Single-strand binding protein family M655_000930 PF01084 Ribosomal protein S18 M655_000940 PF02272 DHHA1 domain M655_000940 PF01368 DHH family M655_000945 PF01281 Ribosomal protein L9, N-terminal domain M655_000945 PF03948 Ribosomal protein L9, C-terminal domain M655_000950 PF00772 DnaB-like helicase N terminal domain M655_000950 PF03796 DnaB-like helicase C terminal domain M655_000955 PF00709 Adenylosuccinate synthetase M655_000970 PF04225 Opacity-associated protein A LysM-like domain M655_000970 PF01551 Peptidase family M23 M655_000975 PF00486 Transcriptional regulatory protein, C terminal M655_000975 PF00072 Response regulator receiver domain M655_000980 PF00672 HAMP domain M655_000980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_000980 PF00512 His Kinase A (phospho-acceptor) domain M655_000980 PF13426 PAS domain M655_000990 PF09648 YycH protein M655_000995 PF00753 Metallo-beta-lactamase superfamily M655_001005 PF13180 PDZ domain M655_001015 PF02590 Predicted SPOUT methyltransferase M655_001035 PF02687 FtsX-like permease family M655_001035 PF12704 MacB-like periplasmic core domain M655_001035 PF00005 ABC transporter M655_001040 PF06039 Malate:quinone oxidoreductase (Mqo) M655_001050 PF02311 AraC-like ligand binding domain M655_001050 PF12833 Helix-turn-helix domain M655_001060 PF00756 Putative esterase M655_001070 PF00072 Response regulator receiver domain M655_001070 PF00486 Transcriptional regulatory protein, C terminal M655_001075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_001075 PF00512 His Kinase A (phospho-acceptor) domain M655_001080 PF00324 Amino acid permease M655_001100 PF02954 Bacterial regulatory protein, Fis family M655_001100 PF01590 GAF domain M655_001100 PF00158 Sigma-54 interaction domain M655_001105 PF03099 Biotin/lipoate A/B protein ligase family M655_001110 PF00676 Dehydrogenase E1 component M655_001115 PF02779 Transketolase, pyrimidine binding domain M655_001115 PF02780 Transketolase, C-terminal domain M655_001120 PF00364 Biotin-requiring enzyme M655_001120 PF02817 e3 binding domain M655_001120 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M655_001125 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M655_001125 PF07992 Pyridine nucleotide-disulphide oxidoreductase M655_001130 PF00512 His Kinase A (phospho-acceptor) domain M655_001130 PF00672 HAMP domain M655_001130 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_001135 PF00486 Transcriptional regulatory protein, C terminal M655_001135 PF00072 Response regulator receiver domain M655_001140 PF00005 ABC transporter M655_001145 PF00528 Binding-protein-dependent transport system inner membrane component M655_001150 PF00497 Bacterial extracellular solute-binding proteins, family 3 M655_001155 PF01235 Sodium:alanine symporter family M655_001160 PF07722 Peptidase C26 M655_001165 PF08274 PhnA Zinc-Ribbon M655_001165 PF03831 PhnA domain M655_001180 PF01061 ABC-2 type transporter M655_001190 PF00158 Sigma-54 interaction domain M655_001190 PF00072 Response regulator receiver domain M655_001190 PF02954 Bacterial regulatory protein, Fis family M655_001195 PF00202 Aminotransferase class-III M655_001200 PF00171 Aldehyde dehydrogenase family M655_001215 PF00892 EamA-like transporter family M655_001220 PF01040 UbiA prenyltransferase family M655_001225 PF03239 Iron permease FTR1 family M655_001230 PF04261 Dyp-type peroxidase family M655_001230 PF10518 TAT (twin-arginine translocation) pathway signal sequence M655_001235 PF09375 Imelysin M655_001240 PF00392 Bacterial regulatory proteins, gntR family M655_001240 PF07729 FCD domain M655_001245 PF02589 LUD domain M655_001250 PF13183 4Fe-4S dicluster domain M655_001250 PF02589 LUD domain M655_001250 PF11870 Domain of unknown function (DUF3390) M655_001255 PF02754 Cysteine-rich domain M655_001265 PF13344 Haloacid dehalogenase-like hydrolase M655_001270 PF00005 ABC transporter M655_001270 PF17912 MalK OB fold domain M655_001270 PF03459 TOBE domain M655_001275 PF13416 Bacterial extracellular solute-binding protein M655_001280 PF00528 Binding-protein-dependent transport system inner membrane component M655_001285 PF00528 Binding-protein-dependent transport system inner membrane component M655_001300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M655_001300 PF03466 LysR substrate binding domain M655_001310 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M655_001315 PF00528 Binding-protein-dependent transport system inner membrane component M655_001340 PF00005 ABC transporter M655_001370 PF07690 Major Facilitator Superfamily M655_001375 PF02898 Nitric oxide synthase, oxygenase domain M655_001380 PF01497 Periplasmic binding protein M655_001385 PF02638 Glycosyl hydrolase-like 10 M655_001400 PF01810 LysE type translocator M655_001455 PF01584 CheW-like domain M655_001455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_001455 PF02895 Signal transducing histidine kinase, homodimeric domain M655_001455 PF01627 Hpt domain M655_001455 PF07194 P2 response regulator binding domain M655_001460 PF00072 Response regulator receiver domain M655_001465 PF01554 MatE M655_001475 PF01032 FecCD transport family M655_001480 PF01032 FecCD transport family M655_001485 PF00005 ABC transporter M655_001490 PF01497 Periplasmic binding protein M655_001495 PF00005 ABC transporter M655_001510 PF00528 Binding-protein-dependent transport system inner membrane component M655_001515 PF00005 ABC transporter M655_001515 PF09383 NIL domain M655_001520 PF03180 NLPA lipoprotein M655_001530 PF13416 Bacterial extracellular solute-binding protein M655_001535 PF01156 Inosine-uridine preferring nucleoside hydrolase M655_001540 PF00528 Binding-protein-dependent transport system inner membrane component M655_001545 PF00528 Binding-protein-dependent transport system inner membrane component M655_001550 PF08402 TOBE domain M655_001550 PF00005 ABC transporter M655_001555 PF01979 Amidohydrolase family M655_001555 PF13382 Adenine deaminase C-terminal domain M655_001560 PF03972 MmgE/PrpD family M655_001565 PF00005 ABC transporter M655_001570 PF00528 Binding-protein-dependent transport system inner membrane component M655_001575 PF00497 Bacterial extracellular solute-binding proteins, family 3 M655_001580 PF00583 Acetyltransferase (GNAT) family M655_001585 PF00296 Luciferase-like monooxygenase M655_001590 PF01554 MatE M655_001595 PF02308 MgtC family M655_001600 PF10415 Fumarase C C-terminus M655_001600 PF00206 Lyase M655_001635 PF09382 RQC domain M655_001635 PF16124 RecQ zinc-binding M655_001635 PF00570 HRDC domain M655_001635 PF00271 Helicase conserved C-terminal domain M655_001635 PF00270 DEAD/DEAH box helicase M655_001640 PF07690 Major Facilitator Superfamily M655_001645 PF01553 Acyltransferase M655_001645 PF00501 AMP-binding enzyme M655_001650 PF00072 Response regulator receiver domain M655_001650 PF00196 Bacterial regulatory proteins, luxR family M655_001655 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_001655 PF00512 His Kinase A (phospho-acceptor) domain M655_001660 PF03610 PTS system fructose IIA component M655_001660 PF00874 PRD domain M655_001660 PF00158 Sigma-54 interaction domain M655_001665 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M655_001670 PF02378 Phosphotransferase system, EIIC M655_001675 PF04794 YdjC-like protein M655_001680 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit M655_001685 PF11975 Family 4 glycosyl hydrolase C-terminal domain M655_001685 PF02056 Family 4 glycosyl hydrolase M655_001695 PF00381 PTS HPr component phosphorylation site M655_001700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_001700 PF00512 His Kinase A (phospho-acceptor) domain M655_001705 PF00486 Transcriptional regulatory protein, C terminal M655_001705 PF00072 Response regulator receiver domain M655_001710 PF08241 Methyltransferase domain M655_001715 PF00271 Helicase conserved C-terminal domain M655_001715 PF00270 DEAD/DEAH box helicase M655_001725 PF00171 Aldehyde dehydrogenase family M655_001735 PF13700 Domain of unknown function (DUF4158) M655_001735 PF01526 Tn3 transposase DDE domain M655_001740 PF02796 Helix-turn-helix domain of resolvase M655_001740 PF00239 Resolvase, N terminal domain M655_001755 PF07992 Pyridine nucleotide-disulphide oxidoreductase M655_001755 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M655_001770 PF01252 Signal peptidase (SPase) II M655_001775 PF00578 AhpC/TSA family M655_001785 PF02683 Cytochrome C biogenesis protein transmembrane region M655_001790 PF00872 Transposase, Mutator family M655_001795 PF02683 Cytochrome C biogenesis protein transmembrane region M655_001805 PF01209 ubiE/COQ5 methyltransferase family M655_001815 PF13529 Peptidase_C39 like family M655_001825 PF00872 Transposase, Mutator family M655_001840 PF00158 Sigma-54 interaction domain M655_001840 PF01590 GAF domain M655_001840 PF02954 Bacterial regulatory protein, Fis family M655_001845 PF00989 PAS fold M655_001845 PF00158 Sigma-54 interaction domain M655_001845 PF02954 Bacterial regulatory protein, Fis family M655_001850 PF00180 Isocitrate/isopropylmalate dehydrogenase M655_001855 PF00171 Aldehyde dehydrogenase family M655_001865 PF03480 Bacterial extracellular solute-binding protein, family 7 M655_001870 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component M655_001875 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component M655_001880 PF02913 FAD linked oxidases, C-terminal domain M655_001880 PF01565 FAD binding domain M655_001885 PF01268 Formate--tetrahydrofolate ligase M655_001890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M655_001890 PF02743 Cache domain M655_001890 PF00672 HAMP domain M655_001895 PF00497 Bacterial extracellular solute-binding proteins, family 3 M655_001900 PF00270 DEAD/DEAH box helicase M655_001900 PF00271 Helicase conserved C-terminal domain M655_001920 PF02378 Phosphotransferase system, EIIC M655_001920 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M655_001925 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M655_001925 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M655_001925 PF08279 HTH domain M655_001925 PF05043 Mga helix-turn-helix domain M655_001925 PF00874 PRD domain M655_001930 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M655_001935 PF01232 Mannitol dehydrogenase Rossmann domain M655_001935 PF08125 Mannitol dehydrogenase C-terminal domain M655_001940 PF02896 PEP-utilising enzyme, TIM barrel domain M655_001940 PF00391 PEP-utilising enzyme, mobile domain M655_001940 PF05524 PEP-utilising enzyme, N-terminal M655_001945 PF00381 PTS HPr component phosphorylation site M655_001950 PF00884 Sulfatase M655_001950 PF16347 Domain of unknown function (DUF4976) M655_001955 PF03601 Conserved hypothetical protein 698 M655_001960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M655_001960 PF03466 LysR substrate binding domain M655_001970 PF00936 BMC domain M655_001980 PF00465 Iron-containing alcohol dehydrogenase M655_001980 PF00171 Aldehyde dehydrogenase family M655_001985 PF00936 BMC domain M655_001990 PF06130 Phosphate propanoyltransferase M655_002000 PF03319 Ethanolamine utilisation protein EutN/carboxysome M655_002005 PF00936 BMC domain M655_002015 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_002015 PF12282 Signal transduction histidine kinase M655_002015 PF07568 Histidine kinase M655_002020 PF00072 Response regulator receiver domain M655_002020 PF03861 ANTAR domain M655_002025 PF06277 Ethanolamine utilisation protein EutA M655_002030 PF06751 Ethanolamine ammonia lyase large subunit (EutB) M655_002035 PF05985 Ethanolamine ammonia-lyase light chain (EutC) M655_002040 PF00056 lactate/malate dehydrogenase, NAD binding domain M655_002040 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain M655_002055 PF13091 PLD-like domain M655_002055 PF13396 Phospholipase_D-nuclease N-terminal M655_002065 PF02566 OsmC-like protein M655_002070 PF01546 Peptidase family M20/M25/M40 M655_002075 PF09339 IclR helix-turn-helix domain M655_002075 PF01614 Bacterial transcriptional regulator M655_002085 PF00324 Amino acid permease M655_002105 PF01047 MarR family M655_002115 PF00672 HAMP domain M655_002115 PF02743 Cache domain M655_002115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M655_002140 PF00174 Oxidoreductase molybdopterin binding domain M655_002145 PF01048 Phosphorylase superfamily M655_002155 PF01740 STAS domain M655_002155 PF00916 Sulfate permease family M655_002170 PF13419 Haloacid dehalogenase-like hydrolase M655_002175 PF08402 TOBE domain M655_002175 PF00005 ABC transporter M655_002180 PF00528 Binding-protein-dependent transport system inner membrane component M655_002185 PF00528 Binding-protein-dependent transport system inner membrane component M655_002190 PF13416 Bacterial extracellular solute-binding protein M655_002195 PF03009 Glycerophosphoryl diester phosphodiesterase family M655_002200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M655_002200 PF00672 HAMP domain M655_002200 PF02743 Cache domain M655_002215 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain M655_002215 PF00749 tRNA synthetases class I (E and Q), catalytic domain M655_002220 PF00324 Amino acid permease M655_002240 PF05199 GMC oxidoreductase M655_002240 PF00732 GMC oxidoreductase M655_002245 PF01053 Cys/Met metabolism PLP-dependent enzyme M655_002250 PF00158 Sigma-54 interaction domain M655_002250 PF00072 Response regulator receiver domain M655_002250 PF02954 Bacterial regulatory protein, Fis family M655_002255 PF03992 Antibiotic biosynthesis monooxygenase M655_002265 PF03167 Uracil DNA glycosylase superfamily M655_002275 PF00175 Oxidoreductase NAD-binding domain M655_002275 PF00970 Oxidoreductase FAD-binding domain M655_002275 PF00111 2Fe-2S iron-sulfur cluster binding domain M655_002285 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain M655_002285 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain M655_002285 PF06827 Zinc finger found in FPG and IleRS M655_002290 PF01170 Putative RNA methylase family UPF0020 M655_002290 PF02926 THUMP domain M655_002305 PF07690 Major Facilitator Superfamily M655_002315 PF00849 RNA pseudouridylate synthase M655_002315 PF01479 S4 domain M655_002320 PF13171 Protein of unknown function (DUF4004) M655_002330 PF00440 Bacterial regulatory proteins, tetR family M655_002330 PF16859 Tetracyclin repressor-like, C-terminal domain M655_002335 PF13533 Biotin-lipoyl like M655_002340 PF00873 AcrB/AcrD/AcrF family M655_002345 PF01966 HD domain M655_002355 PF00085 Thioredoxin M655_002380 PF08741 YwhD family M655_002390 PF00912 Transglycosylase M655_002390 PF00905 Penicillin binding protein transpeptidase domain M655_002395 PF17284 Spermidine synthase tetramerisation domain M655_002400 PF00491 Arginase family M655_002420 PF02954 Bacterial regulatory protein, Fis family M655_002420 PF13426 PAS domain M655_002420 PF00158 Sigma-54 interaction domain M655_002425 PF12544 Lysine-2,3-aminomutase M655_002430 PF02754 Cysteine-rich domain M655_002430 PF13183 4Fe-4S dicluster domain M655_002435 PF02803 Thiolase, C-terminal domain M655_002435 PF00108 Thiolase, N-terminal domain M655_002440 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M655_002440 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M655_002445 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M655_002445 PF02770 Acyl-CoA dehydrogenase, middle domain M655_002445 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M655_002450 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M655_002450 PF02770 Acyl-CoA dehydrogenase, middle domain M655_002450 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M655_002455 PF00440 Bacterial regulatory proteins, tetR family M655_002455 PF08359 YsiA-like protein, C-terminal region M655_002460 PF02310 B12 binding domain M655_002460 PF01642 Methylmalonyl-CoA mutase M655_002465 PF00578 AhpC/TSA family M655_002470 PF13192 Thioredoxin domain M655_002470 PF07992 Pyridine nucleotide-disulphide oxidoreductase M655_002475 PF05066 HB1, ASXL, restriction endonuclease HTH domain M655_002480 PF00117 Glutamine amidotransferase class-I M655_002480 PF06418 CTP synthase N-terminus M655_002485 PF10997 Alternate to MurJ M655_002490 PF00072 Response regulator receiver domain M655_002495 PF01116 Fructose-bisphosphate aldolase class-II M655_002500 PF00923 Transaldolase/Fructose-6-phosphate aldolase M655_002505 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M655_002510 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded M655_002515 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M655_002515 PF07498 Rho termination factor, N-terminal domain M655_002515 PF07497 Rho termination factor, RNA-binding domain M655_002520 PF01476 LysM domain M655_002520 PF08525 Opacity-associated protein A N-terminal motif M655_002520 PF01551 Peptidase family M23 M655_002530 PF01197 Ribosomal protein L31 M655_002540 PF00265 Thymidine kinase M655_002550 PF00472 RF-1 domain M655_002550 PF03462 PCRF domain M655_002555 PF17827 PrmC N-terminal domain M655_002555 PF13847 Methyltransferase domain M655_002560 PF09551 Stage II sporulation protein R (spore_II_R) M655_002570 PF03481 Putative GTP-binding controlling metal-binding M655_002570 PF01300 Telomere recombination M655_002575 PF02659 Putative manganese efflux pump M655_002580 PF01451 Low molecular weight phosphotyrosine protein phosphatase M655_002585 PF02502 Ribose/Galactose Isomerase M655_002590 PF04260 Protein of unknown function (DUF436) M655_002595 PF00464 Serine hydroxymethyltransferase M655_002605 PF02350 UDP-N-acetylglucosamine 2-epimerase M655_002610 PF00963 Cohesin domain M655_002610 PF00395 S-layer homology domain M655_002615 PF00202 Aminotransferase class-III M655_002625 PF06968 Biotin and Thiamin Synthesis associated domain M655_002625 PF04055 Radical SAM superfamily M655_002630 PF00155 Aminotransferase class I and II M655_002635 PF00561 alpha/beta hydrolase fold M655_002645 PF02803 Thiolase, C-terminal domain M655_002645 PF00108 Thiolase, N-terminal domain M655_002660 PF00119 ATP synthase A chain M655_002665 PF00137 ATP synthase subunit C M655_002675 PF00213 ATP synthase delta (OSCP) subunit M655_002680 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M655_002680 PF00306 ATP synthase alpha/beta chain, C terminal domain M655_002680 PF02874 ATP synthase alpha/beta family, beta-barrel domain M655_002685 PF00231 ATP synthase M655_002690 PF02874 ATP synthase alpha/beta family, beta-barrel domain M655_002690 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M655_002695 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain M655_002695 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain M655_002705 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 M655_002710 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit M655_002715 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit M655_002720 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit M655_002725 PF00146 NADH dehydrogenase M655_002730 PF12838 4Fe-4S dicluster domain M655_002735 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 M655_002740 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L M655_002745 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus M655_002745 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus M655_002745 PF00361 Proton-conducting membrane transporter M655_002750 PF00361 Proton-conducting membrane transporter M655_002755 PF00361 Proton-conducting membrane transporter M655_002770 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M655_002775 PF08486 Stage II sporulation protein M655_002780 PF01551 Peptidase family M23 M655_002785 PF12116 Stage III sporulation protein D M655_002795 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M655_002795 PF00460 Flagella basal body rod protein M655_002800 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M655_002800 PF00460 Flagella basal body rod protein M655_002810 PF01066 CDP-alcohol phosphatidyltransferase M655_002815 PF07977 FabA-like domain M655_002820 PF03808 Glycosyl transferase WecB/TagA/CpsF family M655_002825 PF00953 Glycosyl transferase family 4 M655_002830 PF00395 S-layer homology domain M655_002835 PF09186 Domain of unknown function (DUF1949) M655_002835 PF01205 Uncharacterized protein family UPF0029 M655_002845 PF00395 S-layer homology domain M655_002875 PF02899 Phage integrase, N-terminal SAM-like domain M655_002875 PF00589 Phage integrase family M655_002880 PF01381 Helix-turn-helix M655_002900 PF04002 RadC-like JAB domain M655_002900 PF12826 Helix-hairpin-helix motif M655_002905 PF01695 IstB-like ATP binding protein M655_002940 PF13419 Haloacid dehalogenase-like hydrolase M655_002960 PF03323 Bacillus/Clostridium GerA spore germination protein M655_002985 PF00082 Subtilase family M655_002990 PF02773 S-adenosylmethionine synthetase, C-terminal domain M655_002990 PF00438 S-adenosylmethionine synthetase, N-terminal domain M655_002990 PF02772 S-adenosylmethionine synthetase, central domain M655_002995 PF01522 Polysaccharide deacetylase M655_002995 PF14883 Hypothetical glycosyl hydrolase family 13 M655_003000 PF07730 Histidine kinase M655_003000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_003000 PF05384 Sensor protein DegS M655_003005 PF00072 Response regulator receiver domain M655_003005 PF00196 Bacterial regulatory proteins, luxR family M655_003015 PF04851 Type III restriction enzyme, res subunit M655_003015 PF00271 Helicase conserved C-terminal domain M655_003040 PF00460 Flagella basal body rod protein M655_003040 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M655_003045 PF00669 Bacterial flagellin N-terminal helical region M655_003045 PF00700 Bacterial flagellin C-terminal helical region M655_003055 PF02623 FliW protein M655_003060 PF02599 Global regulator protein family M655_003070 PF00669 Bacterial flagellin N-terminal helical region M655_003070 PF00700 Bacterial flagellin C-terminal helical region M655_003075 PF03646 FlaG protein M655_003080 PF02465 Flagellar hook-associated protein 2 N-terminus M655_003080 PF07195 Flagellar hook-associated protein 2 C-terminus M655_003080 PF07196 Flagellin hook IN motif M655_003085 PF02561 Flagellar protein FliS M655_003105 PF01618 MotA/TolQ/ExbB proton channel family M655_003115 PF00497 Bacterial extracellular solute-binding proteins, family 3 M655_003120 PF00528 Binding-protein-dependent transport system inner membrane component M655_003125 PF00313 'Cold-shock' DNA-binding domain M655_003130 PF11871 Domain of unknown function (DUF3391) M655_003130 PF01966 HD domain M655_003135 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein M655_003135 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus M655_003140 PF07517 SecA DEAD-like domain M655_003140 PF01043 SecA preprotein cross-linking domain M655_003140 PF07516 SecA Wing and Scaffold domain M655_003165 PF13442 Cytochrome C oxidase, cbb3-type, subunit III M655_003170 PF01118 Semialdehyde dehydrogenase, NAD binding domain M655_003170 PF02774 Semialdehyde dehydrogenase, dimerisation domain M655_003175 PF00696 Amino acid kinase family M655_003180 PF00202 Aminotransferase class-III M655_003185 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain M655_003185 PF00117 Glutamine amidotransferase class-I M655_003190 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M655_003190 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain M655_003190 PF02142 MGS-like domain M655_003195 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M655_003195 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M655_003205 PF01966 HD domain M655_003215 PF00764 Arginosuccinate synthase M655_003220 PF00206 Lyase M655_003220 PF14698 Argininosuccinate lyase C-terminal M655_003225 PF03845 Spore germination protein M655_003230 PF00465 Iron-containing alcohol dehydrogenase M655_003235 PF00005 ABC transporter M655_003240 PF02687 FtsX-like permease family M655_003240 PF18075 FtsX extracellular domain M655_003245 PF01551 Peptidase family M23 M655_003245 PF08525 Opacity-associated protein A N-terminal motif M655_003245 PF01476 LysM domain M655_003250 PF01471 Putative peptidoglycan binding domain M655_003250 PF03572 Peptidase family S41 M655_003250 PF17820 PDZ domain M655_003255 PF17820 PDZ domain M655_003270 PF02151 UvrB/uvrC motif M655_003270 PF17757 UvrB interaction domain M655_003270 PF04851 Type III restriction enzyme, res subunit M655_003270 PF00271 Helicase conserved C-terminal domain M655_003270 PF12344 Ultra-violet resistance protein B M655_003275 PF17755 UvrA DNA-binding domain M655_003275 PF17760 UvrA interaction domain M655_003280 PF01966 HD domain M655_003285 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV M655_003295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_003300 PF02603 HPr Serine kinase N terminus M655_003300 PF07475 HPr Serine kinase C-terminal domain M655_003305 PF14602 Hexapeptide repeat of succinyl-transferase M655_003310 PF13393 Histidyl-tRNA synthetase M655_003315 PF01634 ATP phosphoribosyltransferase M655_003320 PF00815 Histidinol dehydrogenase M655_003325 PF00475 Imidazoleglycerol-phosphate dehydratase M655_003330 PF00117 Glutamine amidotransferase class-I M655_003335 PF00977 Histidine biosynthesis protein M655_003340 PF00977 Histidine biosynthesis protein M655_003345 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase M655_003345 PF01502 Phosphoribosyl-AMP cyclohydrolase M655_003350 PF13302 Acetyltransferase (GNAT) domain M655_003400 PF07992 Pyridine nucleotide-disulphide oxidoreductase M655_003405 PF03668 P-loop ATPase protein family M655_003410 PF01933 Uncharacterised protein family UPF0052 M655_003415 PF02650 WhiA C-terminal HTH domain M655_003415 PF10298 WhiA N-terminal LAGLIDADG-like domain M655_003415 PF14527 WhiA LAGLIDADG-like domain M655_003420 PF00381 PTS HPr component phosphorylation site M655_003430 PF08141 Small acid-soluble spore protein H family M655_003435 PF00574 Clp protease M655_003450 PF13458 Periplasmic binding protein M655_003460 PF08447 PAS fold M655_003460 PF00989 PAS fold M655_003460 PF00512 His Kinase A (phospho-acceptor) domain M655_003460 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_003470 PF00309 Sigma-54 factor, Activator interacting domain (AID) M655_003470 PF04552 Sigma-54, DNA binding domain M655_003470 PF04963 Sigma-54 factor, core binding domain M655_003480 PF04198 Putative sugar-binding domain M655_003490 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M655_003490 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M655_003495 PF00162 Phosphoglycerate kinase M655_003500 PF00121 Triosephosphate isomerase M655_003505 PF01676 Metalloenzyme superfamily M655_003505 PF06415 BPG-independent PGAM N-terminus (iPGM_N) M655_003510 PF00113 Enolase, C-terminal TIM barrel domain M655_003510 PF03952 Enolase, N-terminal domain M655_003515 PF00005 ABC transporter M655_003520 PF01032 FecCD transport family M655_003525 PF01032 FecCD transport family M655_003530 PF01497 Periplasmic binding protein M655_003540 PF08281 Sigma-70, region 4 M655_003540 PF04542 Sigma-70 region 2 M655_003545 PF03649 Uncharacterised protein family (UPF0014) M655_003550 PF00005 ABC transporter M655_003555 PF13442 Cytochrome C oxidase, cbb3-type, subunit III M655_003560 PF03840 Preprotein translocase SecG subunit M655_003565 PF17876 Cold shock domain M655_003565 PF00773 RNB domain M655_003565 PF08206 Ribonuclease B OB domain M655_003565 PF00575 S1 RNA binding domain M655_003570 PF01668 SmpB protein M655_003585 PF13556 PucR C-terminal helix-turn-helix domain M655_003585 PF07905 Purine catabolism regulatory protein-like family M655_003585 PF17853 GGDEF-like domain M655_003590 PF01177 Asp/Glu/Hydantoin racemase M655_003595 PF00083 Sugar (and other) transporter M655_003600 PF05378 Hydantoinase/oxoprolinase N-terminal region M655_003600 PF01968 Hydantoinase/oxoprolinase M655_003625 PF00356 Bacterial regulatory proteins, lacI family M655_003630 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M655_003630 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M655_003640 PF03358 NADPH-dependent FMN reductase M655_003645 PF01687 Riboflavin kinase M655_003650 PF01687 Riboflavin kinase M655_003655 PF00180 Isocitrate/isopropylmalate dehydrogenase M655_003660 PF01116 Fructose-bisphosphate aldolase class-II M655_003665 PF00356 Bacterial regulatory proteins, lacI family M655_003670 PF00356 Bacterial regulatory proteins, lacI family M655_003675 PF07690 Major Facilitator Superfamily M655_003680 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M655_003680 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M655_003685 PF00171 Aldehyde dehydrogenase family M655_003690 PF00365 Phosphofructokinase M655_003695 PF08240 Alcohol dehydrogenase GroES-like domain M655_003695 PF00107 Zinc-binding dehydrogenase M655_003700 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M655_003700 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M655_003700 PF00205 Thiamine pyrophosphate enzyme, central domain M655_003705 PF01261 Xylose isomerase-like TIM barrel M655_003710 PF00456 Transketolase, thiamine diphosphate binding domain M655_003715 PF02779 Transketolase, pyrimidine binding domain M655_003715 PF02780 Transketolase, C-terminal domain M655_003720 PF04962 KduI/IolB family M655_003725 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M655_003725 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M655_003730 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M655_003730 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M655_003735 PF00005 ABC transporter M655_003740 PF02653 Branched-chain amino acid transport system / permease component M655_003745 PF13407 Periplasmic binding protein domain M655_003750 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M655_003750 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M655_003755 PF13407 Periplasmic binding protein domain M655_003760 PF05227 CHASE3 domain M655_003760 PF00672 HAMP domain M655_003760 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M655_003765 PF00561 alpha/beta hydrolase fold M655_003770 PF13333 Integrase core domain M655_003770 PF00665 Integrase core domain M655_003795 PF00196 Bacterial regulatory proteins, luxR family M655_003795 PF17874 MalT-like TPR region M655_003810 PF00672 HAMP domain M655_003810 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M655_003810 PF12729 Four helix bundle sensory module for signal transduction M655_003820 PF00206 Lyase M655_003820 PF14698 Argininosuccinate lyase C-terminal M655_003830 PF00561 alpha/beta hydrolase fold M655_003840 PF01032 FecCD transport family M655_003845 PF00005 ABC transporter M655_003890 PF08281 Sigma-70, region 4 M655_003890 PF04542 Sigma-70 region 2 M655_003890 PF12680 SnoaL-like domain M655_003915 PF09339 IclR helix-turn-helix domain M655_003915 PF01614 Bacterial transcriptional regulator M655_003920 PF04239 Protein of unknown function (DUF421) M655_003930 PF13188 PAS domain M655_003930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_003930 PF13426 PAS domain M655_003930 PF00989 PAS fold M655_003930 PF00512 His Kinase A (phospho-acceptor) domain M655_003940 PF00005 ABC transporter M655_003945 PF02653 Branched-chain amino acid transport system / permease component M655_003955 PF00557 Metallopeptidase family M24 M655_003960 PF00958 GMP synthase C terminal domain M655_003960 PF13302 Acetyltransferase (GNAT) domain M655_003960 PF03352 Methyladenine glycosylase M655_003960 PF13673 Acetyltransferase (GNAT) domain M655_003960 PF00117 Glutamine amidotransferase class-I M655_003990 PF08447 PAS fold M655_003990 PF00989 PAS fold M655_003990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_003990 PF00512 His Kinase A (phospho-acceptor) domain M655_004020 PF00072 Response regulator receiver domain M655_004020 PF00990 Diguanylate cyclase, GGDEF domain M655_004030 PF09962 Uncharacterized conserved protein (DUF2196) M655_004040 PF12802 MarR family M655_004045 PF00005 ABC transporter M655_004045 PF00571 CBS domain M655_004050 PF00528 Binding-protein-dependent transport system inner membrane component M655_004055 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M655_004095 PF00005 ABC transporter M655_004110 PF09335 SNARE associated Golgi protein M655_004125 PF07690 Major Facilitator Superfamily M655_004135 PF12450 von Willebrand factor M655_004135 PF12034 Domain of unknown function (DUF3520) M655_004135 PF00092 von Willebrand factor type A domain M655_004140 PF00465 Iron-containing alcohol dehydrogenase M655_004155 PF13426 PAS domain M655_004155 PF02954 Bacterial regulatory protein, Fis family M655_004155 PF00158 Sigma-54 interaction domain M655_004175 PF00190 Cupin M655_004185 PF00440 Bacterial regulatory proteins, tetR family M655_004185 PF13977 BetI-type transcriptional repressor, C-terminal M655_004200 PF00245 Alkaline phosphatase M655_004205 PF09369 Domain of unknown function (DUF1998) M655_004205 PF00271 Helicase conserved C-terminal domain M655_004205 PF00270 DEAD/DEAH box helicase M655_004210 PF13482 RNase_H superfamily M655_004225 PF13302 Acetyltransferase (GNAT) domain M655_004230 PF00392 Bacterial regulatory proteins, gntR family M655_004230 PF00155 Aminotransferase class I and II M655_004240 PF00893 Small Multidrug Resistance protein M655_004245 PF17314 Family of unknown function (DUF5360) M655_004250 PF00230 Major intrinsic protein M655_004255 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M655_004255 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M655_004260 PF16901 C-terminal domain of alpha-glycerophosphate oxidase M655_004260 PF01266 FAD dependent oxidoreductase M655_004265 PF04309 Glycerol-3-phosphate responsive antiterminator M655_004270 PF00155 Aminotransferase class I and II M655_004270 PF00392 Bacterial regulatory proteins, gntR family M655_004275 PF01619 Proline dehydrogenase M655_004285 PF00005 ABC transporter M655_004300 PF07726 ATPase family associated with various cellular activities (AAA) M655_004300 PF17863 AAA lid domain M655_004320 PF07731 Multicopper oxidase M655_004320 PF00394 Multicopper oxidase M655_004320 PF07732 Multicopper oxidase M655_004325 PF08241 Methyltransferase domain M655_004330 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M655_004330 PF00672 HAMP domain M655_004330 PF02743 Cache domain M655_004340 PF00005 ABC transporter M655_004355 PF03323 Bacillus/Clostridium GerA spore germination protein M655_004360 PF05504 Spore germination B3/ GerAC like, C-terminal M655_004380 PF00106 short chain dehydrogenase M655_004390 PF00115 Cytochrome C and Quinol oxidase polypeptide I M655_004395 PF00510 Cytochrome c oxidase subunit III M655_004400 PF03626 Prokaryotic Cytochrome C oxidase subunit IV M655_004410 PF03061 Thioesterase superfamily M655_004415 PF03061 Thioesterase superfamily M655_004420 PF00378 Enoyl-CoA hydratase/isomerase M655_004425 PF14535 AMP-binding enzyme C-terminal domain M655_004425 PF00501 AMP-binding enzyme M655_004430 PF00378 Enoyl-CoA hydratase/isomerase M655_004435 PF00378 Enoyl-CoA hydratase/isomerase M655_004440 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M655_004440 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M655_004440 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain M655_004445 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M655_004445 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M655_004450 PF00108 Thiolase, N-terminal domain M655_004450 PF02803 Thiolase, C-terminal domain M655_004455 PF02803 Thiolase, C-terminal domain M655_004455 PF00108 Thiolase, N-terminal domain M655_004470 PF02653 Branched-chain amino acid transport system / permease component M655_004475 PF02653 Branched-chain amino acid transport system / permease component M655_004480 PF00005 ABC transporter M655_004480 PF12399 Branched-chain amino acid ATP-binding cassette transporter M655_004485 PF00005 ABC transporter M655_004495 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M655_004500 PF05138 Phenylacetic acid catabolic protein M655_004515 PF01883 Iron-sulfur cluster assembly protein M655_004520 PF00171 Aldehyde dehydrogenase family M655_004525 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) M655_004540 PF02628 Cytochrome oxidase assembly protein M655_004550 PF00149 Calcineurin-like phosphoesterase M655_004550 PF12320 Type 5 capsule protein repressor C-terminal domain M655_004555 PF13476 AAA domain M655_004560 PF13361 UvrD-like helicase C-terminal domain M655_004560 PF12705 PD-(D/E)XK nuclease superfamily M655_004565 PF13361 UvrD-like helicase C-terminal domain M655_004565 PF00580 UvrD/REP helicase N-terminal domain M655_004565 PF12705 PD-(D/E)XK nuclease superfamily M655_004570 PF05163 DinB family M655_004575 PF13520 Amino acid permease M655_004585 PF00696 Amino acid kinase family M655_004590 PF01751 Toprim domain M655_004590 PF01131 DNA topoisomerase M655_004595 PF06866 Protein of unknown function (DUF1256) M655_004600 PF04303 PrpF protein M655_004605 PF13533 Biotin-lipoyl like M655_004610 PF00005 ABC transporter M655_004620 PF00440 Bacterial regulatory proteins, tetR family M655_004625 PF00551 Formyl transferase M655_004625 PF01842 ACT domain M655_004635 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M655_004635 PF03466 LysR substrate binding domain M655_004650 PF01144 Coenzyme A transferase M655_004655 PF01144 Coenzyme A transferase M655_004660 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M655_004675 PF00871 Acetokinase family M655_004680 PF00575 S1 RNA binding domain M655_004705 PF03466 LysR substrate binding domain M655_004705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M655_004710 PF00326 Prolyl oligopeptidase family M655_004715 PF00512 His Kinase A (phospho-acceptor) domain M655_004715 PF00989 PAS fold M655_004715 PF08447 PAS fold M655_004715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_004730 PF00072 Response regulator receiver domain M655_004735 PF02423 Ornithine cyclodeaminase/mu-crystallin family M655_004740 PF00083 Sugar (and other) transporter M655_004740 PF07690 Major Facilitator Superfamily M655_004755 PF06018 CodY GAF-like domain M655_004755 PF17853 GGDEF-like domain M655_004755 PF13556 PucR C-terminal helix-turn-helix domain M655_004760 PF01262 Alanine dehydrogenase/PNT, C-terminal domain M655_004760 PF05222 Alanine dehydrogenase/PNT, N-terminal domain M655_004770 PF03323 Bacillus/Clostridium GerA spore germination protein M655_004775 PF03845 Spore germination protein M655_004780 PF01180 Dihydroorotate dehydrogenase M655_004785 PF01891 Cobalt uptake substrate-specific transmembrane region M655_004790 PF02553 Cobalt transport protein component CbiN M655_004795 PF02361 Cobalt transport protein M655_004800 PF00005 ABC transporter M655_004815 PF01609 Transposase DDE domain M655_004845 PF00120 Glutamine synthetase, catalytic domain M655_004845 PF03951 Glutamine synthetase, beta-Grasp domain M655_004850 PF08546 Ketopantoate reductase PanE/ApbA C terminal M655_004850 PF02558 Ketopantoate reductase PanE/ApbA M655_004855 PF02401 LytB protein M655_004860 PF12832 MFS_1 like family M655_004870 PF00296 Luciferase-like monooxygenase M655_004880 PF03551 Transcriptional regulator PadR-like family M655_004900 PF01384 Phosphate transporter family M655_004905 PF01865 Protein of unknown function DUF47 M655_004910 PF01810 LysE type translocator M655_004915 PF00392 Bacterial regulatory proteins, gntR family M655_004915 PF00155 Aminotransferase class I and II M655_004935 PF01610 Transposase M655_004935 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 M655_004935 PF13542 Helix-turn-helix domain of transposase family ISL3 M655_004955 PF01609 Transposase DDE domain M655_004970 PF01797 Transposase IS200 like M655_004990 PF13542 Helix-turn-helix domain of transposase family ISL3 M655_004990 PF01610 Transposase M655_004990 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 M655_004995 PF07875 Coat F domain M655_005010 PF03807 NADP oxidoreductase coenzyme F420-dependent M655_005010 PF14748 Pyrroline-5-carboxylate reductase dimerisation M655_005015 PF00171 Aldehyde dehydrogenase family M655_005020 PF01472 PUA domain M655_005020 PF00696 Amino acid kinase family M655_005035 PF00005 ABC transporter M655_005045 PF00395 S-layer homology domain M655_005045 PF00963 Cohesin domain M655_005050 PF00378 Enoyl-CoA hydratase/isomerase M655_005050 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M655_005050 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M655_005055 PF00108 Thiolase, N-terminal domain M655_005055 PF02803 Thiolase, C-terminal domain M655_005060 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M655_005060 PF02770 Acyl-CoA dehydrogenase, middle domain M655_005060 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M655_005070 PF03845 Spore germination protein M655_005075 PF03323 Bacillus/Clostridium GerA spore germination protein M655_005080 PF03845 Spore germination protein M655_005090 PF03079 ARD/ARD' family M655_005095 PF00596 Class II Aldolase and Adducin N-terminal domain M655_005105 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain M655_005105 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain M655_005110 PF04542 Sigma-70 region 2 M655_005110 PF08281 Sigma-70, region 4 M655_005115 PF13791 Sigma factor regulator C-terminal M655_005115 PF13800 Sigma factor regulator N-terminal M655_005120 PF01636 Phosphotransferase enzyme family M655_005125 PF01008 Initiation factor 2 subunit family M655_005130 PF13302 Acetyltransferase (GNAT) domain M655_005135 PF00664 ABC transporter transmembrane region M655_005135 PF00005 ABC transporter M655_005140 PF00005 ABC transporter M655_005140 PF00664 ABC transporter transmembrane region M655_005145 PF07690 Major Facilitator Superfamily M655_005150 PF00188 Cysteine-rich secretory protein family M655_005150 PF14504 CAP-associated N-terminal M655_005160 PF01343 Peptidase family S49 M655_005165 PF00005 ABC transporter M655_005170 PF01522 Polysaccharide deacetylase M655_005185 PF03960 ArsC family M655_005190 PF00155 Aminotransferase class I and II M655_005195 PF01597 Glycine cleavage H-protein M655_005200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M655_005200 PF00672 HAMP domain M655_005200 PF02743 Cache domain M655_005220 PF07687 Peptidase dimerisation domain M655_005220 PF01546 Peptidase family M20/M25/M40 M655_005225 PF01293 Phosphoenolpyruvate carboxykinase M655_005230 PF00005 ABC transporter M655_005235 PF01458 Uncharacterized protein family (UPF0051) M655_005240 PF00266 Aminotransferase class-V M655_005245 PF01592 NifU-like N terminal domain M655_005250 PF01458 Uncharacterized protein family (UPF0051) M655_005275 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M655_005285 PF00293 NUDIX domain M655_005285 PF13344 Haloacid dehalogenase-like hydrolase M655_005295 PF00392 Bacterial regulatory proteins, gntR family M655_005295 PF00155 Aminotransferase class I and II M655_005310 PF03323 Bacillus/Clostridium GerA spore germination protein M655_005315 PF03323 Bacillus/Clostridium GerA spore germination protein M655_005320 PF01566 Natural resistance-associated macrophage protein M655_005330 PF01145 SPFH domain / Band 7 family M655_005330 PF15975 Flotillin M655_005335 PF01522 Polysaccharide deacetylase M655_005340 PF00696 Amino acid kinase family M655_005340 PF13840 ACT domain M655_005350 PF01904 Protein of unknown function DUF72 M655_005355 PF01925 Sulfite exporter TauE/SafE M655_005360 PF02872 5'-nucleotidase, C-terminal domain M655_005370 PF08827 Domain of unknown function (DUF1805) M655_005375 PF11871 Domain of unknown function (DUF3391) M655_005375 PF01966 HD domain M655_005380 PF01544 CorA-like Mg2+ transporter protein M655_005390 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M655_005405 PF09560 Sporulation protein YunB (Spo_YunB) M655_005425 PF01872 RibD C-terminal domain M655_005425 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M655_005430 PF00677 Lumazine binding domain M655_005435 PF00925 GTP cyclohydrolase II M655_005435 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase M655_005440 PF00885 6,7-dimethyl-8-ribityllumazine synthase M655_005460 PF01609 Transposase DDE domain M655_005475 PF03323 Bacillus/Clostridium GerA spore germination protein M655_005480 PF03845 Spore germination protein M655_005490 PF00171 Aldehyde dehydrogenase family M655_005495 PF00440 Bacterial regulatory proteins, tetR family M655_005495 PF17932 Tetracyclin repressor-like, C-terminal domain M655_005500 PF01551 Peptidase family M23 M655_005505 PF01969 Protein of unknown function DUF111 M655_005510 PF01965 DJ-1/PfpI family M655_005515 PF01969 Protein of unknown function DUF111 M655_005520 PF00149 Calcineurin-like phosphoesterase M655_005525 PF02463 RecF/RecN/SMC N terminal domain M655_005530 PF04055 Radical SAM superfamily M655_005530 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family M655_005535 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) M655_005540 PF06265 Protein of unknown function (DUF1027) M655_005550 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded M655_005560 PF01934 Protein of unknown function DUF86 M655_005575 PF13344 Haloacid dehalogenase-like hydrolase M655_005590 PF04608 Phosphatidylglycerophosphatase A M655_005600 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M655_005600 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M655_005610 PF01106 NifU-like domain M655_005615 PF00291 Pyridoxal-phosphate dependent enzyme M655_005620 PF01053 Cys/Met metabolism PLP-dependent enzyme M655_005625 PF07315 Protein of unknown function (DUF1462) M655_005665 PF01434 Peptidase family M41 M655_005665 PF06480 FtsH Extracellular M655_005665 PF00004 ATPase family associated with various cellular activities (AAA) M655_005665 PF17862 AAA+ lid domain M655_005675 PF07992 Pyridine nucleotide-disulphide oxidoreductase M655_005680 PF07293 Protein of unknown function (DUF1450) M655_005685 PF04055 Radical SAM superfamily M655_005695 PF01521 Iron-sulphur cluster biosynthesis M655_005755 PF07992 Pyridine nucleotide-disulphide oxidoreductase M655_005760 PF07992 Pyridine nucleotide-disulphide oxidoreductase M655_005770 PF00293 NUDIX domain M655_005770 PF09297 NADH pyrophosphatase zinc ribbon domain M655_005775 PF17302 Family of unknown function (DUF5351) M655_005785 PF06725 3D domain M655_005790 PF01497 Periplasmic binding protein M655_005795 PF02681 Divergent PAP2 family M655_005805 PF02789 Cytosol aminopeptidase family, N-terminal domain M655_005805 PF00883 Cytosol aminopeptidase family, catalytic domain M655_005810 PF13380 CoA binding domain M655_005815 PF00174 Oxidoreductase molybdopterin binding domain M655_005830 PF01609 Transposase DDE domain M655_005855 PF07690 Major Facilitator Superfamily M655_005865 PF01569 PAP2 superfamily M655_005870 PF01547 Bacterial extracellular solute-binding protein M655_005875 PF00528 Binding-protein-dependent transport system inner membrane component M655_005880 PF00528 Binding-protein-dependent transport system inner membrane component M655_005885 PF00583 Acetyltransferase (GNAT) family M655_005890 PF01915 Glycosyl hydrolase family 3 C-terminal domain M655_005890 PF00933 Glycosyl hydrolase family 3 N terminal domain M655_005895 PF13580 SIS domain M655_005900 PF16916 Dimerisation domain of Zinc Transporter M655_005900 PF01545 Cation efflux family M655_005915 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M655_005930 PF00005 ABC transporter M655_005930 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M655_005935 PF00005 ABC transporter M655_005935 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M655_005945 PF07687 Peptidase dimerisation domain M655_005945 PF01546 Peptidase family M20/M25/M40 M655_005950 PF09339 IclR helix-turn-helix domain M655_005950 PF01614 Bacterial transcriptional regulator M655_005965 PF00291 Pyridoxal-phosphate dependent enzyme M655_005970 PF00294 pfkB family carbohydrate kinase M655_005980 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term M655_005980 PF12833 Helix-turn-helix domain M655_005985 PF01497 Periplasmic binding protein M655_006010 PF00561 alpha/beta hydrolase fold M655_006020 PF00989 PAS fold M655_006020 PF00512 His Kinase A (phospho-acceptor) domain M655_006020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_006020 PF00672 HAMP domain M655_006025 PF00072 Response regulator receiver domain M655_006025 PF00486 Transcriptional regulatory protein, C terminal M655_006035 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M655_006035 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M655_006045 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family M655_006065 PF00892 EamA-like transporter family M655_006075 PF01810 LysE type translocator M655_006095 PF03099 Biotin/lipoate A/B protein ligase family M655_006095 PF10437 Bacterial lipoate protein ligase C-terminus M655_006105 PF01022 Bacterial regulatory protein, arsR family M655_006115 PF04542 Sigma-70 region 2 M655_006115 PF08281 Sigma-70, region 4 M655_006125 PF00892 EamA-like transporter family M655_006140 PF07690 Major Facilitator Superfamily M655_006145 PF07690 Major Facilitator Superfamily M655_006160 PF03594 Benzoate membrane transport protein M655_006165 PF02954 Bacterial regulatory protein, Fis family M655_006165 PF00072 Response regulator receiver domain M655_006165 PF00158 Sigma-54 interaction domain M655_006170 PF13188 PAS domain M655_006170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_006170 PF00512 His Kinase A (phospho-acceptor) domain M655_006170 PF08448 PAS fold M655_006170 PF00072 Response regulator receiver domain M655_006175 PF00465 Iron-containing alcohol dehydrogenase M655_006180 PF00107 Zinc-binding dehydrogenase M655_006180 PF08240 Alcohol dehydrogenase GroES-like domain M655_006200 PF01970 Tripartite tricarboxylate transporter TctA family M655_006220 PF00355 Rieske [2Fe-2S] domain M655_006220 PF00848 Ring hydroxylating alpha subunit (catalytic domain) M655_006225 PF00171 Aldehyde dehydrogenase family M655_006230 PF00571 CBS domain M655_006230 PF00005 ABC transporter M655_006235 PF00528 Binding-protein-dependent transport system inner membrane component M655_006240 PF04069 Substrate binding domain of ABC-type glycine betaine transport system M655_006245 PF00528 Binding-protein-dependent transport system inner membrane component M655_006250 PF13472 GDSL-like Lipase/Acylhydrolase family M655_006255 PF00180 Isocitrate/isopropylmalate dehydrogenase M655_006260 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) M655_006270 PF00106 short chain dehydrogenase M655_006275 PF00196 Bacterial regulatory proteins, luxR family M655_006275 PF00072 Response regulator receiver domain M655_006280 PF09587 Bacterial capsule synthesis protein PGA_cap M655_006290 PF00155 Aminotransferase class I and II M655_006290 PF00392 Bacterial regulatory proteins, gntR family M655_006300 PF00528 Binding-protein-dependent transport system inner membrane component M655_006305 PF00528 Binding-protein-dependent transport system inner membrane component M655_006310 PF00005 ABC transporter M655_006310 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M655_006315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M655_006315 PF00005 ABC transporter M655_006320 PF10055 Uncharacterized small protein (DUF2292) M655_006330 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M655_006340 PF11954 Domain of unknown function (DUF3471) M655_006340 PF00144 Beta-lactamase M655_006345 PF13188 PAS domain M655_006345 PF13426 PAS domain M655_006345 PF00512 His Kinase A (phospho-acceptor) domain M655_006345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_006345 PF00989 PAS fold M655_006350 PF01773 Na+ dependent nucleoside transporter N-terminus M655_006350 PF07662 Na+ dependent nucleoside transporter C-terminus M655_006365 PF13309 HTH domain M655_006365 PF08348 YheO-like PAS domain M655_006395 PF00324 Amino acid permease M655_006400 PF07969 Amidohydrolase family M655_006405 PF07883 Cupin domain M655_006425 PF00324 Amino acid permease M655_006430 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain M655_006430 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase M655_006435 PF00491 Arginase family M655_006440 PF00171 Aldehyde dehydrogenase family M655_006445 PF00202 Aminotransferase class-III M655_006450 PF00158 Sigma-54 interaction domain M655_006450 PF00989 PAS fold M655_006450 PF02954 Bacterial regulatory protein, Fis family M655_006460 PF01048 Phosphorylase superfamily M655_006465 PF07690 Major Facilitator Superfamily M655_006485 PF00953 Glycosyl transferase family 4 M655_006500 PF00440 Bacterial regulatory proteins, tetR family M655_006500 PF17922 Tetracyclin repressor-like, C-terminal domain M655_006525 PF01965 DJ-1/PfpI family M655_006525 PF12833 Helix-turn-helix domain M655_006530 PF00512 His Kinase A (phospho-acceptor) domain M655_006530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_006530 PF16736 Single Cache-like M655_006530 PF00989 PAS fold M655_006535 PF00486 Transcriptional regulatory protein, C terminal M655_006535 PF00072 Response regulator receiver domain M655_006555 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M655_006555 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M655_006560 PF01594 AI-2E family transporter M655_006565 PF00072 Response regulator receiver domain M655_006565 PF00486 Transcriptional regulatory protein, C terminal M655_006570 PF00989 PAS fold M655_006570 PF00512 His Kinase A (phospho-acceptor) domain M655_006570 PF00672 HAMP domain M655_006570 PF18698 Histidine kinase sensor domain M655_006570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_006585 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M655_006590 PF03061 Thioesterase superfamily M655_006610 PF08239 Bacterial SH3 domain M655_006610 PF01520 N-acetylmuramoyl-L-alanine amidase M655_006615 PF00805 Pentapeptide repeats (8 copies) M655_006620 PF07827 KNTase C-terminal domain M655_006635 PF14489 QueF-like protein M655_006640 PF04055 Radical SAM superfamily M655_006645 PF01242 6-pyruvoyl tetrahydropterin synthase M655_006650 PF06508 Queuosine biosynthesis protein QueC M655_006660 PF03932 CutC family M655_006675 PF01475 Ferric uptake regulator family M655_006680 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) M655_006680 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 M655_006715 PF04324 BFD-like [2Fe-2S] binding domain M655_006715 PF07992 Pyridine nucleotide-disulphide oxidoreductase M655_006730 PF00557 Metallopeptidase family M24 M655_006730 PF01321 Creatinase/Prolidase N-terminal domain M655_006735 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M655_006740 PF02954 Bacterial regulatory protein, Fis family M655_006740 PF00989 PAS fold M655_006740 PF00158 Sigma-54 interaction domain M655_006745 PF01266 FAD dependent oxidoreductase M655_006750 PF05544 Proline racemase M655_006755 PF00701 Dihydrodipicolinate synthetase family M655_006760 PF00171 Aldehyde dehydrogenase family M655_006765 PF05544 Proline racemase M655_006770 PF07457 Protein of unknown function (DUF1516) M655_006790 PF01380 SIS domain M655_006790 PF01418 Helix-turn-helix domain, rpiR family M655_006795 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase M655_006815 PF06081 Aromatic acid exporter family member 1 M655_006815 PF11728 Putative aromatic acid exporter C-terminal domain M655_006820 PF00005 ABC transporter M655_006830 PF00528 Binding-protein-dependent transport system inner membrane component M655_006835 PF09339 IclR helix-turn-helix domain M655_006835 PF01614 Bacterial transcriptional regulator M655_006840 PF02423 Ornithine cyclodeaminase/mu-crystallin family M655_006845 PF00155 Aminotransferase class I and II M655_006860 PF00291 Pyridoxal-phosphate dependent enzyme M655_006860 PF13291 ACT domain M655_006865 PF03466 LysR substrate binding domain M655_006865 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M655_006875 PF00480 ROK family M655_006875 PF01047 MarR family M655_006885 PF08402 TOBE domain M655_006885 PF00005 ABC transporter M655_006890 PF00528 Binding-protein-dependent transport system inner membrane component M655_006905 PF14698 Argininosuccinate lyase C-terminal M655_006905 PF00206 Lyase M655_006910 PF01869 BadF/BadG/BcrA/BcrD ATPase family M655_006915 PF02585 GlcNAc-PI de-N-acetylase M655_006920 PF07729 FCD domain M655_006920 PF00392 Bacterial regulatory proteins, gntR family M655_006930 PF00881 Nitroreductase family M655_006965 PF01497 Periplasmic binding protein M655_006970 PF01032 FecCD transport family M655_006975 PF01032 FecCD transport family M655_006985 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M655_006990 PF03060 Nitronate monooxygenase M655_006995 PF01979 Amidohydrolase family M655_007005 PF08242 Methyltransferase domain M655_007005 PF00550 Phosphopantetheine attachment site M655_007005 PF00668 Condensation domain M655_007005 PF00501 AMP-binding enzyme M655_007015 PF00294 pfkB family carbohydrate kinase M655_007020 PF10400 Virulence activator alpha C-term M655_007020 PF03551 Transcriptional regulator PadR-like family M655_007025 PF10431 C-terminal, D2-small domain, of ClpB protein M655_007025 PF07724 AAA domain (Cdc48 subfamily) M655_007025 PF00004 ATPase family associated with various cellular activities (AAA) M655_007025 PF17871 AAA lid domain M655_007035 PF00155 Aminotransferase class I and II M655_007035 PF00392 Bacterial regulatory proteins, gntR family M655_007040 PF00892 EamA-like transporter family M655_007045 PF08402 TOBE domain M655_007045 PF00005 ABC transporter M655_007050 PF00528 Binding-protein-dependent transport system inner membrane component M655_007055 PF00528 Binding-protein-dependent transport system inner membrane component M655_007060 PF13416 Bacterial extracellular solute-binding protein M655_007065 PF00561 alpha/beta hydrolase fold M655_007085 PF00501 AMP-binding enzyme M655_007085 PF13193 AMP-binding enzyme C-terminal domain M655_007110 PF03193 RsgA GTPase M655_007115 PF00156 Phosphoribosyl transferase domain M655_007120 PF00860 Permease family M655_007130 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M655_007135 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M655_007150 PF08281 Sigma-70, region 4 M655_007150 PF04542 Sigma-70 region 2 M655_007155 PF13800 Sigma factor regulator N-terminal M655_007155 PF13791 Sigma factor regulator C-terminal M655_007175 PF05504 Spore germination B3/ GerAC like, C-terminal M655_007180 PF03845 Spore germination protein M655_007185 PF03323 Bacillus/Clostridium GerA spore germination protein M655_007190 PF00350 Dynamin family M655_007195 PF00350 Dynamin family M655_007200 PF00474 Sodium:solute symporter family M655_007210 PF00313 'Cold-shock' DNA-binding domain M655_007220 PF00392 Bacterial regulatory proteins, gntR family M655_007220 PF00155 Aminotransferase class I and II M655_007225 PF00303 Thymidylate synthase M655_007230 PF00186 Dihydrofolate reductase M655_007235 PF01966 HD domain M655_007245 PF01546 Peptidase family M20/M25/M40 M655_007245 PF07687 Peptidase dimerisation domain M655_007250 PF14398 YheC/D like ATP-grasp M655_007290 PF00682 HMGL-like M655_007290 PF08502 LeuA allosteric (dimerisation) domain M655_007300 PF00109 Beta-ketoacyl synthase, N-terminal domain M655_007300 PF02801 Beta-ketoacyl synthase, C-terminal domain M655_007310 PF07690 Major Facilitator Superfamily M655_007320 PF12392 Collagenase M655_007320 PF01136 Peptidase family U32 M655_007325 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M655_007340 PF13426 PAS domain M655_007340 PF08447 PAS fold M655_007340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M655_007345 PF04607 Region found in RelA / SpoT proteins M655_007350 PF01546 Peptidase family M20/M25/M40 M655_007355 PF00440 Bacterial regulatory proteins, tetR family M655_007360 PF07690 Major Facilitator Superfamily M655_007365 PF00271 Helicase conserved C-terminal domain M655_007365 PF00270 DEAD/DEAH box helicase M655_007370 PF00528 Binding-protein-dependent transport system inner membrane component M655_007375 PF12911 N-terminal TM domain of oligopeptide transport permease C M655_007375 PF00528 Binding-protein-dependent transport system inner membrane component M655_007380 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M655_007380 PF00005 ABC transporter M655_007385 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M655_007385 PF00005 ABC transporter M655_007390 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M655_007410 PF01189 16S rRNA methyltransferase RsmB/F M655_007410 PF17125 N-terminal domain of 16S rRNA methyltransferase RsmF M655_007410 PF17126 RsmF rRNA methyltransferase first C-terminal domain M655_007420 PF08447 PAS fold M655_007420 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M655_007420 PF13426 PAS domain M655_007435 PF03551 Transcriptional regulator PadR-like family M655_007435 PF13847 Methyltransferase domain M655_007440 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M655_007445 PF07694 5TMR of 5TMR-LYT M655_007445 PF06580 Histidine kinase M655_007445 PF13492 GAF domain M655_007445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_007450 PF00072 Response regulator receiver domain M655_007450 PF04397 LytTr DNA-binding domain M655_007460 PF01609 Transposase DDE domain M655_007465 PF02554 Carbon starvation protein CstA M655_007465 PF13722 5TM C-terminal transporter carbon starvation CstA M655_007480 PF00459 Inositol monophosphatase family M655_007485 PF00723 Glycosyl hydrolases family 15 M655_007500 PF00881 Nitroreductase family M655_007510 PF00005 ABC transporter M655_007515 PF00528 Binding-protein-dependent transport system inner membrane component M655_007520 PF00497 Bacterial extracellular solute-binding proteins, family 3 M655_007525 PF00497 Bacterial extracellular solute-binding proteins, family 3 M655_007545 PF16326 ABC transporter C-terminal domain M655_007545 PF00005 ABC transporter M655_007545 PF12848 ABC transporter M655_007550 PF07690 Major Facilitator Superfamily M655_007575 PF00456 Transketolase, thiamine diphosphate binding domain M655_007575 PF02780 Transketolase, C-terminal domain M655_007575 PF02779 Transketolase, pyrimidine binding domain M655_007580 PF00912 Transglycosylase M655_007580 PF00905 Penicillin binding protein transpeptidase domain M655_007610 PF00005 ABC transporter M655_007630 PF00072 Response regulator receiver domain M655_007635 PF02390 Putative methyltransferase M655_007640 PF00877 NlpC/P60 family M655_007645 PF01522 Polysaccharide deacetylase M655_007655 PF00920 Dehydratase family M655_007670 PF00459 Inositol monophosphatase family M655_007700 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain M655_007700 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M655_007710 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M655_007715 PF01384 Phosphate transporter family M655_007720 PF01507 Phosphoadenosine phosphosulfate reductase family M655_007725 PF14306 PUA-like domain M655_007725 PF01747 ATP-sulfurylase M655_007740 PF09397 Ftsk gamma domain M655_007740 PF17854 FtsK alpha domain M655_007740 PF01580 FtsK/SpoIIIE family M655_007745 PF07690 Major Facilitator Superfamily M655_007760 PF12708 Pectate lyase superfamily protein M655_007760 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) M655_007760 PF13229 Right handed beta helix region M655_007765 PF01370 NAD dependent epimerase/dehydratase family M655_007770 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M655_007770 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M655_007770 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M655_007775 PF02719 Polysaccharide biosynthesis protein M655_007780 PF03816 Cell envelope-related transcriptional attenuator domain M655_007785 PF02706 Chain length determinant protein M655_007790 PF13614 AAA domain M655_007805 PF00483 Nucleotidyl transferase M655_007815 PF00534 Glycosyl transferases group 1 M655_007815 PF13477 Glycosyl transferase 4-like M655_007825 PF02397 Bacterial sugar transferase M655_007835 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M655_007855 PF00158 Sigma-54 interaction domain M655_007855 PF02954 Bacterial regulatory protein, Fis family M655_007855 PF00072 Response regulator receiver domain M655_007860 PF10502 Signal peptidase, peptidase S26 M655_007865 PF12833 Helix-turn-helix domain M655_007875 PF01175 Urocanase Rossmann-like domain M655_007875 PF17391 Urocanase N-terminal domain M655_007875 PF17392 Urocanase C-terminal domain M655_007880 PF01979 Amidohydrolase family M655_007885 PF00491 Arginase family M655_007890 PF02368 Bacterial Ig-like domain (group 2) M655_007910 PF00155 Aminotransferase class I and II M655_007910 PF00392 Bacterial regulatory proteins, gntR family M655_007920 PF00248 Aldo/keto reductase family M655_007930 PF09339 IclR helix-turn-helix domain M655_007930 PF01614 Bacterial transcriptional regulator M655_007955 PF01168 Alanine racemase, N-terminal domain M655_007955 PF01168 Alanine racemase, N-terminal domain M655_007955 PF00842 Alanine racemase, C-terminal domain M655_007955 PF00842 Alanine racemase, C-terminal domain M655_007960 PF13031 Protein of unknown function (DUF3892) M655_007970 PF00005 ABC transporter M655_007970 PF00664 ABC transporter transmembrane region M655_007975 PF00005 ABC transporter M655_007975 PF00664 ABC transporter transmembrane region M655_007980 PF00330 Aconitase family (aconitate hydratase) M655_007980 PF00694 Aconitase C-terminal domain M655_007985 PF00005 ABC transporter M655_007985 PF00664 ABC transporter transmembrane region M655_007990 PF00072 Response regulator receiver domain M655_007990 PF00486 Transcriptional regulatory protein, C terminal M655_007995 PF16736 Single Cache-like M655_007995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_007995 PF00989 PAS fold M655_007995 PF00512 His Kinase A (phospho-acceptor) domain M655_008000 PF00899 ThiF family M655_008005 PF02391 MoaE protein M655_008015 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA M655_008020 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M655_008020 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M655_008025 PF01967 MoaC family M655_008030 PF07690 Major Facilitator Superfamily M655_008035 PF00155 Aminotransferase class I and II M655_008060 PF08402 TOBE domain M655_008060 PF00005 ABC transporter M655_008070 PF00155 Aminotransferase class I and II M655_008095 PF13180 PDZ domain M655_008100 PF00239 Resolvase, N terminal domain M655_008100 PF02796 Helix-turn-helix domain of resolvase M655_008105 PF01638 HxlR-like helix-turn-helix M655_008125 PF02073 Thermophilic metalloprotease (M29) M655_008145 PF11009 Protein of unknown function (DUF2847) M655_008150 PF02491 SHS2 domain inserted in FTSA M655_008155 PF00793 DAHP synthetase I family M655_008155 PF01817 Chorismate mutase type II M655_008165 PF00356 Bacterial regulatory proteins, lacI family M655_008170 PF01048 Phosphorylase superfamily M655_008175 PF00850 Histone deacetylase domain M655_008180 PF00571 CBS domain M655_008185 PF00583 Acetyltransferase (GNAT) family M655_008190 PF00912 Transglycosylase M655_008190 PF00905 Penicillin binding protein transpeptidase domain M655_008200 PF07883 Cupin domain M655_008200 PF01381 Helix-turn-helix M655_008205 PF01479 S4 domain M655_008205 PF00163 Ribosomal protein S4/S9 N-terminal domain M655_008215 PF00300 Histidine phosphatase superfamily (branch 1) M655_008220 PF00990 Diguanylate cyclase, GGDEF domain M655_008225 PF00753 Metallo-beta-lactamase superfamily M655_008240 PF06160 Septation ring formation regulator, EzrA M655_008260 PF05343 M42 glutamyl aminopeptidase M655_008270 PF00083 Sugar (and other) transporter M655_008285 PF14034 Sporulation protein YtrH M655_008295 PF07070 SpoOM protein M655_008305 PF08222 CodY helix-turn-helix domain M655_008305 PF06018 CodY GAF-like domain M655_008310 PF07364 Metallopeptidase family M81 M655_008310 PF07171 MlrC C-terminus M655_008320 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M655_008325 PF00528 Binding-protein-dependent transport system inner membrane component M655_008335 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M655_008335 PF00005 ABC transporter M655_008340 PF00005 ABC transporter M655_008340 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M655_008345 PF13378 Enolase C-terminal domain-like M655_008345 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M655_008350 PF11954 Domain of unknown function (DUF3471) M655_008350 PF00144 Beta-lactamase M655_008370 PF07690 Major Facilitator Superfamily M655_008375 PF00106 short chain dehydrogenase M655_008385 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) M655_008395 PF01931 Protein of unknown function DUF84 M655_008400 PF01678 Diaminopimelate epimerase M655_008405 PF06725 3D domain M655_008405 PF01476 LysM domain M655_008410 PF00266 Aminotransferase class-V M655_008415 PF02926 THUMP domain M655_008415 PF02568 Thiamine biosynthesis protein (ThiI) M655_008420 PF01557 Fumarylacetoacetate (FAA) hydrolase family M655_008520 PF00512 His Kinase A (phospho-acceptor) domain M655_008520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_008520 PF08447 PAS fold M655_008520 PF00989 PAS fold M655_008525 PF03741 Integral membrane protein TerC family M655_008535 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase M655_008535 PF00534 Glycosyl transferases group 1 M655_008540 PF00269 Small, acid-soluble spore proteins, alpha/beta type M655_008550 PF04239 Protein of unknown function (DUF421) M655_008555 PF03862 SpoVAC/SpoVAEB sporulation membrane protein M655_008560 PF07451 Stage V sporulation protein AD (SpoVAD) M655_008565 PF03862 SpoVAC/SpoVAEB sporulation membrane protein M655_008570 PF01471 Putative peptidoglycan binding domain M655_008570 PF07486 Cell Wall Hydrolase M655_008575 PF06725 3D domain M655_008575 PF01476 LysM domain M655_008585 PF09579 Sporulation protein YtfJ (Spore_YtfJ) M655_008595 PF00364 Biotin-requiring enzyme M655_008595 PF00289 Biotin carboxylase, N-terminal domain M655_008595 PF02436 Conserved carboxylase domain M655_008595 PF02785 Biotin carboxylase C-terminal domain M655_008595 PF00682 HMGL-like M655_008595 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M655_008610 PF08534 Redoxin M655_008620 PF00753 Metallo-beta-lactamase superfamily M655_008635 PF00849 RNA pseudouridylate synthase M655_008640 PF01557 Fumarylacetoacetate (FAA) hydrolase family M655_008645 PF04209 homogentisate 1,2-dioxygenase M655_008650 PF01613 Flavin reductase like domain M655_008665 PF00440 Bacterial regulatory proteins, tetR family M655_008670 PF00296 Luciferase-like monooxygenase M655_008680 PF00557 Metallopeptidase family M24 M655_008685 PF02540 NAD synthase M655_008705 PF09335 SNARE associated Golgi protein M655_008715 PF01966 HD domain M655_008735 PF07517 SecA DEAD-like domain M655_008735 PF01043 SecA preprotein cross-linking domain M655_008735 PF07516 SecA Wing and Scaffold domain M655_008735 PF02810 SEC-C motif M655_008740 PF07690 Major Facilitator Superfamily M655_008750 PF03816 Cell envelope-related transcriptional attenuator domain M655_008765 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M655_008765 PF07992 Pyridine nucleotide-disulphide oxidoreductase M655_008775 PF00753 Metallo-beta-lactamase superfamily M655_008780 PF07690 Major Facilitator Superfamily M655_008790 PF00005 ABC transporter M655_008795 PF12679 ABC-2 family transporter protein M655_008805 PF10835 Protein of unknown function (DUF2573) M655_008815 PF08281 Sigma-70, region 4 M655_008815 PF04542 Sigma-70 region 2 M655_008820 PF04851 Type III restriction enzyme, res subunit M655_008820 PF00271 Helicase conserved C-terminal domain M655_008825 PF01595 Cyclin M transmembrane N-terminal domain M655_008825 PF03471 Transporter associated domain M655_008825 PF00571 CBS domain M655_008840 PF02653 Branched-chain amino acid transport system / permease component M655_008845 PF00005 ABC transporter M655_008850 PF07690 Major Facilitator Superfamily M655_008855 PF12793 Sugar transport-related sRNA regulator N-term M655_008855 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M655_008865 PF01975 Survival protein SurE M655_008895 PF01584 CheW-like domain M655_008910 PF00392 Bacterial regulatory proteins, gntR family M655_008910 PF00155 Aminotransferase class I and II M655_008920 PF03741 Integral membrane protein TerC family M655_008925 PF00291 Pyridoxal-phosphate dependent enzyme M655_008930 PF00072 Response regulator receiver domain M655_008950 PF00580 UvrD/REP helicase N-terminal domain M655_008950 PF13361 UvrD-like helicase C-terminal domain M655_008955 PF03471 Transporter associated domain M655_008955 PF00571 CBS domain M655_008955 PF01595 Cyclin M transmembrane N-terminal domain M655_008960 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) M655_008960 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 M655_008965 PF00753 Metallo-beta-lactamase superfamily M655_008965 PF16123 Hydroxyacylglutathione hydrolase C-terminus M655_008975 PF02811 PHP domain M655_008985 PF00440 Bacterial regulatory proteins, tetR family M655_008990 PF13673 Acetyltransferase (GNAT) domain M655_009005 PF04608 Phosphatidylglycerophosphatase A M655_009030 PF14659 Phage integrase, N-terminal SAM-like domain M655_009030 PF00589 Phage integrase family M655_009040 PF06114 IrrE N-terminal-like domain M655_009055 PF01381 Helix-turn-helix M655_009125 PF13361 UvrD-like helicase C-terminal domain M655_009125 PF00580 UvrD/REP helicase N-terminal domain M655_009135 PF01695 IstB-like ATP binding protein M655_009140 PF00772 DnaB-like helicase N terminal domain M655_009140 PF03796 DnaB-like helicase C terminal domain M655_009150 PF05866 Endodeoxyribonuclease RusA M655_009190 PF00145 C-5 cytosine-specific DNA methylase M655_009220 PF04327 Cysteine protease Prp M655_009280 PF01906 Putative heavy-metal-binding M655_009310 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) M655_009350 PF01510 N-acetylmuramoyl-L-alanine amidase M655_009350 PF01471 Putative peptidoglycan binding domain M655_009350 PF01476 LysM domain M655_009360 PF00145 C-5 cytosine-specific DNA methylase M655_009380 PF00664 ABC transporter transmembrane region M655_009380 PF00005 ABC transporter M655_009385 PF00072 Response regulator receiver domain M655_009385 PF00486 Transcriptional regulatory protein, C terminal M655_009390 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_009390 PF00672 HAMP domain M655_009390 PF00512 His Kinase A (phospho-acceptor) domain M655_009390 PF13426 PAS domain M655_009390 PF14827 Double sensory domain of two-component sensor kinase M655_009400 PF01435 Peptidase family M48 M655_009425 PF09827 CRISPR associated protein Cas2 M655_009485 PF00892 EamA-like transporter family M655_009490 PF01037 Lrp/AsnC ligand binding domain M655_009495 PF13419 Haloacid dehalogenase-like hydrolase M655_009505 PF07516 SecA Wing and Scaffold domain M655_009505 PF07517 SecA DEAD-like domain M655_009505 PF02810 SEC-C motif M655_009505 PF01043 SecA preprotein cross-linking domain M655_009510 PF02384 N-6 DNA Methylase M655_009510 PF12161 HsdM N-terminal domain M655_009515 PF01420 Type I restriction modification DNA specificity domain M655_009520 PF01593 Flavin containing amine oxidoreductase M655_009535 PF04607 Region found in RelA / SpoT proteins M655_009535 PF02824 TGS domain M655_009535 PF13291 ACT domain M655_009540 PF00488 MutS domain V M655_009540 PF01713 Smr domain M655_009550 PF00158 Sigma-54 interaction domain M655_009550 PF13188 PAS domain M655_009550 PF02954 Bacterial regulatory protein, Fis family M655_009560 PF04229 GrpB protein M655_009560 PF13673 Acetyltransferase (GNAT) domain M655_009570 PF00486 Transcriptional regulatory protein, C terminal M655_009570 PF00072 Response regulator receiver domain M655_009575 PF00512 His Kinase A (phospho-acceptor) domain M655_009575 PF00672 HAMP domain M655_009575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_009585 PF03413 Peptidase propeptide and YPEB domain M655_009590 PF01368 DHH family M655_009590 PF02833 DHHA2 domain M655_009595 PF07739 TipAS antibiotic-recognition domain M655_009595 PF13411 MerR HTH family regulatory protein M655_009610 PF00753 Metallo-beta-lactamase superfamily M655_009615 PF01497 Periplasmic binding protein M655_009620 PF01032 FecCD transport family M655_009625 PF00005 ABC transporter M655_009630 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase M655_009635 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 M655_009635 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) M655_009645 PF08239 Bacterial SH3 domain M655_009645 PF01520 N-acetylmuramoyl-L-alanine amidase M655_009660 PF01139 tRNA-splicing ligase RtcB M655_009670 PF02110 Hydroxyethylthiazole kinase family M655_009710 PF02899 Phage integrase, N-terminal SAM-like domain M655_009710 PF00589 Phage integrase family M655_009715 PF18801 response regulator aspartate phosphatase H, N terminal M655_009720 PF01609 Transposase DDE domain M655_009775 PF00872 Transposase, Mutator family M655_009790 PF03050 Transposase IS66 family M655_009790 PF13817 IS66 C-terminal element M655_009790 PF13007 Transposase C of IS166 homeodomain M655_009790 PF13005 zinc-finger binding domain of transposase IS66 M655_009835 PF01695 IstB-like ATP binding protein M655_009840 PF00665 Integrase core domain M655_009865 PF01497 Periplasmic binding protein M655_009870 PF01497 Periplasmic binding protein M655_009915 PF00892 EamA-like transporter family M655_009920 PF08543 Phosphomethylpyrimidine kinase M655_009925 PF12704 MacB-like periplasmic core domain M655_009925 PF00005 ABC transporter M655_009925 PF02687 FtsX-like permease family M655_009930 PF02687 FtsX-like permease family M655_009930 PF00005 ABC transporter M655_009930 PF12704 MacB-like periplasmic core domain M655_009935 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M655_009960 PF12787 EcsC protein family M655_009970 PF00258 Flavodoxin M655_009975 PF14602 Hexapeptide repeat of succinyl-transferase M655_009975 PF00132 Bacterial transferase hexapeptide (six repeats) M655_009975 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal M655_009980 PF00202 Aminotransferase class-III M655_009985 PF01546 Peptidase family M20/M25/M40 M655_009985 PF07687 Peptidase dimerisation domain M655_010000 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase M655_010000 PF13457 GW (Gly-Tryp) dipeptide domain M655_010020 PF12146 Serine aminopeptidase, S33 M655_010035 PF01180 Dihydroorotate dehydrogenase M655_010040 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain M655_010040 PF01276 Orn/Lys/Arg decarboxylase, major domain M655_010045 PF03060 Nitronate monooxygenase M655_010050 PF06335 Protein of unknown function (DUF1054) M655_010070 PF02675 S-adenosylmethionine decarboxylase M655_010085 PF00255 Glutathione peroxidase M655_010115 PF01053 Cys/Met metabolism PLP-dependent enzyme M655_010120 PF01053 Cys/Met metabolism PLP-dependent enzyme M655_010125 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) M655_010130 PF13638 PIN domain M655_010130 PF02562 PhoH-like protein M655_010155 PF00753 Metallo-beta-lactamase superfamily M655_010160 PF09587 Bacterial capsule synthesis protein PGA_cap M655_010175 PF11117 Protein of unknown function (DUF2626) M655_010185 PF03960 ArsC family M655_010190 PF00378 Enoyl-CoA hydratase/isomerase M655_010200 PF00583 Acetyltransferase (GNAT) family M655_010205 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M655_010205 PF00289 Biotin carboxylase, N-terminal domain M655_010205 PF02785 Biotin carboxylase C-terminal domain M655_010210 PF00364 Biotin-requiring enzyme M655_010215 PF00682 HMGL-like M655_010220 PF00378 Enoyl-CoA hydratase/isomerase M655_010225 PF01039 Carboxyl transferase domain M655_010230 PF08546 Ketopantoate reductase PanE/ApbA C terminal M655_010230 PF02558 Ketopantoate reductase PanE/ApbA M655_010245 PF10079 Bacillithiol biosynthesis BshC M655_010250 PF00963 Cohesin domain M655_010250 PF00395 S-layer homology domain M655_010260 PF07690 Major Facilitator Superfamily M655_010265 PF07729 FCD domain M655_010265 PF00392 Bacterial regulatory proteins, gntR family M655_010270 PF13520 Amino acid permease M655_010275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M655_010275 PF03466 LysR substrate binding domain M655_010280 PF05221 S-adenosyl-L-homocysteine hydrolase M655_010280 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain M655_010285 PF02381 MraZ protein, putative antitoxin-like M655_010290 PF01795 MraW methylase family M655_010305 PF03793 PASTA domain M655_010305 PF00905 Penicillin binding protein transpeptidase domain M655_010305 PF03717 Penicillin-binding Protein dimerisation domain M655_010310 PF01225 Mur ligase family, catalytic domain M655_010310 PF02875 Mur ligase family, glutamate ligase domain M655_010310 PF08245 Mur ligase middle domain M655_010315 PF00953 Glycosyl transferase family 4 M655_010320 PF08245 Mur ligase middle domain M655_010320 PF02875 Mur ligase family, glutamate ligase domain M655_010325 PF01098 Cell cycle protein M655_010330 PF04101 Glycosyltransferase family 28 C-terminal domain M655_010330 PF03033 Glycosyltransferase family 28 N-terminal domain M655_010335 PF01565 FAD binding domain M655_010335 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain M655_010340 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M655_010345 PF08478 POTRA domain, FtsQ-type M655_010345 PF03799 Cell division protein FtsQ M655_010350 PF05949 Bacterial protein of unknown function (DUF881) M655_010360 PF06947 Protein of unknown function (DUF1290) M655_010365 PF02491 SHS2 domain inserted in FTSA M655_010370 PF00091 Tubulin/FtsZ family, GTPase domain M655_010370 PF12327 FtsZ family, C-terminal domain M655_010375 PF03419 Sporulation factor SpoIIGA M655_010380 PF04545 Sigma-70, region 4 M655_010380 PF04542 Sigma-70 region 2 M655_010385 PF04545 Sigma-70, region 4 M655_010385 PF04542 Sigma-70 region 2 M655_010385 PF04539 Sigma-70 region 3 M655_010390 PF05239 PRC-barrel domain M655_010400 PF01168 Alanine racemase, N-terminal domain M655_010405 PF04472 Cell division protein SepF M655_010410 PF02325 YGGT family M655_010415 PF01479 S4 domain M655_010415 PF17774 Putative RNA-binding domain in YlmH M655_010420 PF05103 DivIVA protein M655_010425 PF00133 tRNA synthetases class I (I, L, M and V) M655_010425 PF08264 Anticodon-binding domain of tRNA M655_010435 PF01258 Prokaryotic dksA/traR C4-type zinc finger M655_010440 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M655_010440 PF13378 Enolase C-terminal domain-like M655_010445 PF07690 Major Facilitator Superfamily M655_010450 PF00293 NUDIX domain M655_010455 PF07992 Pyridine nucleotide-disulphide oxidoreductase M655_010460 PF03816 Cell envelope-related transcriptional attenuator domain M655_010485 PF10737 Spore germination protein GerPC M655_010490 PF10803 Spore germination GerPB M655_010495 PF10676 Spore germination protein gerPA/gerPF M655_010505 PF13243 Squalene-hopene cyclase C-terminal domain M655_010505 PF13249 Squalene-hopene cyclase N-terminal domain M655_010510 PF10720 Protein of unknown function (DUF2515) M655_010515 PF01751 Toprim domain M655_010515 PF01131 DNA topoisomerase M655_010520 PF04012 PspA/IM30 family M655_010545 PF03065 Glycosyl hydrolase family 57 M655_010545 PF09210 Domain of unknown function (DUF1957) M655_010550 PF00483 Nucleotidyl transferase M655_010560 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M655_010560 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M655_010560 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M655_010560 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M655_010570 PF01252 Signal peptidase (SPase) II M655_010575 PF00849 RNA pseudouridylate synthase M655_010575 PF01479 S4 domain M655_010590 PF00156 Phosphoribosyl transferase domain M655_010595 PF00860 Permease family M655_010600 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain M655_010600 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain M655_010605 PF01979 Amidohydrolase family M655_010610 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain M655_010610 PF00117 Glutamine amidotransferase class-I M655_010615 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M655_010615 PF02142 MGS-like domain M655_010615 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain M655_010620 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family M655_010625 PF00156 Phosphoribosyl transferase domain M655_010635 PF01022 Bacterial regulatory protein, arsR family M655_010645 PF06480 FtsH Extracellular M655_010645 PF17862 AAA+ lid domain M655_010645 PF01434 Peptidase family M41 M655_010645 PF00004 ATPase family associated with various cellular activities (AAA) M655_010650 PF04199 Putative cyclase M655_010665 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain M655_010665 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain M655_010670 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M655_010670 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M655_010675 PF04199 Putative cyclase M655_010685 PF00742 Homoserine dehydrogenase M655_010685 PF03447 Homoserine dehydrogenase, NAD binding domain M655_010685 PF01842 ACT domain M655_010695 PF09587 Bacterial capsule synthesis protein PGA_cap M655_010705 PF00293 NUDIX domain M655_010710 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M655_010710 PF02874 ATP synthase alpha/beta family, beta-barrel domain M655_010720 PF07301 Protein of unknown function (DUF1453) M655_010735 PF01885 RNA 2'-phosphotransferase, Tpt1 / KptA family M655_010740 PF03745 Domain of unknown function (DUF309) M655_010755 PF00392 Bacterial regulatory proteins, gntR family M655_010755 PF07729 FCD domain M655_010765 PF02515 CoA-transferase family III M655_010770 PF00378 Enoyl-CoA hydratase/isomerase M655_010790 PF05670 NFACT protein RNA binding domain M655_010795 PF08340 Domain of unknown function (DUF1732) M655_010795 PF03755 YicC-like family, N-terminal region M655_010800 PF04025 Domain of unknown function (DUF370) M655_010805 PF00625 Guanylate kinase M655_010810 PF01192 RNA polymerase Rpb6 M655_010820 PF02441 Flavoprotein M655_010820 PF04127 DNA / pantothenate metabolism flavoprotein M655_010825 PF17764 3′ DNA-binding domain (3′BD) M655_010825 PF00271 Helicase conserved C-terminal domain M655_010825 PF18074 Primosomal protein N C-terminal domain M655_010825 PF18319 PriA DNA helicase Cys-rich region (CRR) domain M655_010825 PF04851 Type III restriction enzyme, res subunit M655_010830 PF01327 Polypeptide deformylase M655_010835 PF00551 Formyl transferase M655_010835 PF02911 Formyl transferase, C-terminal domain M655_010840 PF01029 NusB family M655_010840 PF01189 16S rRNA methyltransferase RsmB/F M655_010845 PF04055 Radical SAM superfamily M655_010855 PF03793 PASTA domain M655_010855 PF00069 Protein kinase domain M655_010860 PF16745 RsgA N-terminal domain M655_010860 PF03193 RsgA GTPase M655_010865 PF00834 Ribulose-phosphate 3 epimerase family M655_010870 PF06271 RDD family M655_010875 PF07687 Peptidase dimerisation domain M655_010875 PF01546 Peptidase family M20/M25/M40 M655_010880 PF00497 Bacterial extracellular solute-binding proteins, family 3 M655_010885 PF00528 Binding-protein-dependent transport system inner membrane component M655_010890 PF00005 ABC transporter M655_010895 PF09515 Thiamine transporter protein (Thia_YuaJ) M655_010900 PF08183 Stage V sporulation protein family M655_010905 PF00830 Ribosomal L28 family M655_010910 PF03780 Asp23 family, cell envelope-related function M655_010915 PF13684 Dihydroxyacetone kinase family M655_010915 PF02734 DAK2 domain M655_010920 PF02645 Uncharacterised protein, DegV family COG1307 M655_010930 PF03315 Serine dehydratase beta chain M655_010930 PF01842 ACT domain M655_010935 PF03313 Serine dehydratase alpha chain M655_010940 PF00270 DEAD/DEAH box helicase M655_010940 PF17191 RecG wedge domain M655_010940 PF00271 Helicase conserved C-terminal domain M655_010960 PF06445 GyrI-like small molecule binding domain M655_010960 PF12833 Helix-turn-helix domain M655_010965 PF11799 impB/mucB/samB family C-terminal domain M655_010965 PF00817 impB/mucB/samB family M655_010980 PF13529 Peptidase_C39 like family M655_011000 PF12558 ATP-binding cassette cobalt transporter M655_011000 PF00005 ABC transporter M655_011010 PF00664 ABC transporter transmembrane region M655_011010 PF00005 ABC transporter M655_011010 PF08021 Siderophore-interacting FAD-binding domain M655_011010 PF04954 Siderophore-interacting protein M655_011015 PF00664 ABC transporter transmembrane region M655_011015 PF00005 ABC transporter M655_011020 PF14040 Deoxyribonuclease NucA/NucB M655_011025 PF07690 Major Facilitator Superfamily M655_011030 PF07969 Amidohydrolase family M655_011040 PF03466 LysR substrate binding domain M655_011040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M655_011045 PF09529 Integral membrane protein (intg_mem_TP0381) M655_011060 PF00206 Lyase M655_011060 PF10415 Fumarase C C-terminus M655_011065 PF01522 Polysaccharide deacetylase M655_011080 PF00271 Helicase conserved C-terminal domain M655_011080 PF12419 SNF2 Helicase protein M655_011080 PF00176 SNF2 family N-terminal domain M655_011085 PF01636 Phosphotransferase enzyme family M655_011090 PF00534 Glycosyl transferases group 1 M655_011090 PF13439 Glycosyltransferase Family 4 M655_011120 PF17863 AAA lid domain M655_011120 PF07726 ATPase family associated with various cellular activities (AAA) M655_011145 PF12708 Pectate lyase superfamily protein M655_011145 PF09992 Phosphodiester glycosidase M655_011160 PF02557 D-alanyl-D-alanine carboxypeptidase M655_011165 PF10502 Signal peptidase, peptidase S26 M655_011170 PF01047 MarR family M655_011185 PF02073 Thermophilic metalloprotease (M29) M655_011195 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family M655_011200 PF02797 Chalcone and stilbene synthases, C-terminal domain M655_011200 PF00195 Chalcone and stilbene synthases, N-terminal domain M655_011210 PF07690 Major Facilitator Superfamily M655_011215 PF03707 Bacterial signalling protein N terminal repeat M655_011215 PF00990 Diguanylate cyclase, GGDEF domain M655_011215 PF00563 EAL domain M655_011215 PF13188 PAS domain M655_011225 PF01384 Phosphate transporter family M655_011235 PF01790 Prolipoprotein diacylglyceryl transferase M655_011240 PF13298 DNA polymerase Ligase (LigD) M655_011240 PF01068 ATP dependent DNA ligase domain M655_011240 PF04679 ATP dependent DNA ligase C terminal region M655_011245 PF03323 Bacillus/Clostridium GerA spore germination protein M655_011250 PF05504 Spore germination B3/ GerAC like, C-terminal M655_011265 PF01068 ATP dependent DNA ligase domain M655_011265 PF04675 DNA ligase N terminus M655_011265 PF04679 ATP dependent DNA ligase C terminal region M655_011280 PF01964 Radical SAM ThiC family M655_011280 PF13667 ThiC-associated domain M655_011285 PF01545 Cation efflux family M655_011285 PF16916 Dimerisation domain of Zinc Transporter M655_011290 PF02735 Ku70/Ku80 beta-barrel domain M655_011300 PF01467 Cytidylyltransferase-like M655_011305 PF07670 Nucleoside recognition M655_011310 PF01734 Patatin-like phospholipase M655_011315 PF05362 Lon protease (S16) C-terminal proteolytic domain M655_011315 PF13180 PDZ domain M655_011325 PF01783 Ribosomal L32p protein family M655_011330 PF00455 DeoR C terminal sensor domain M655_011330 PF08220 DeoR-like helix-turn-helix domain M655_011350 PF00005 ABC transporter M655_011355 PF03061 Thioesterase superfamily M655_011360 PF02504 Fatty acid synthesis protein M655_011365 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M655_011365 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M655_011370 PF00698 Acyl transferase domain M655_011380 PF00550 Phosphopantetheine attachment site M655_011385 PF02801 Beta-ketoacyl synthase, C-terminal domain M655_011385 PF00109 Beta-ketoacyl synthase, N-terminal domain M655_011390 PF14622 Ribonuclease-III-like M655_011390 PF00035 Double-stranded RNA binding motif M655_011395 PF06470 SMC proteins Flexible Hinge Domain M655_011395 PF02463 RecF/RecN/SMC N terminal domain M655_011400 PF00448 SRP54-type protein, GTPase domain M655_011400 PF02881 SRP54-type protein, helical bundle domain M655_011405 PF04297 Putative helix-turn-helix protein, YlxM / p13 like M655_011410 PF02978 Signal peptide binding domain M655_011410 PF02881 SRP54-type protein, helical bundle domain M655_011410 PF00448 SRP54-type protein, GTPase domain M655_011415 PF00886 Ribosomal protein S16 M655_011425 PF11068 YlqD protein M655_011430 PF01782 RimM N-terminal domain M655_011430 PF05239 PRC-barrel domain M655_011435 PF01746 tRNA (Guanine-1)-methyltransferase M655_011440 PF01245 Ribosomal protein L19 M655_011445 PF10502 Signal peptidase, peptidase S26 M655_011450 PF01926 50S ribosome-binding GTPase M655_011455 PF01351 Ribonuclease HII M655_011465 PF01312 FlhB HrpN YscU SpaS Family M655_011470 PF02021 Uncharacterised protein family UPF0102 M655_011480 PF10127 RNA repair pathway DNA polymerase beta family M655_011495 PF01078 Magnesium chelatase, subunit ChlI M655_011495 PF13335 Magnesium chelatase, subunit ChlI C-terminal M655_011505 PF00563 EAL domain M655_011505 PF08668 HDOD domain M655_011515 PF00990 Diguanylate cyclase, GGDEF domain M655_011520 PF01906 Putative heavy-metal-binding M655_011540 PF08442 ATP-grasp domain M655_011540 PF00549 CoA-ligase M655_011545 PF02629 CoA binding domain M655_011545 PF00549 CoA-ligase M655_011550 PF02481 DNA recombination-mediator protein A M655_011555 PF01131 DNA topoisomerase M655_011555 PF01396 Topoisomerase DNA binding C4 zinc finger M655_011555 PF01751 Toprim domain M655_011560 PF01134 Glucose inhibited division protein A M655_011565 PF00589 Phage integrase family M655_011565 PF02899 Phage integrase, N-terminal SAM-like domain M655_011570 PF00227 Proteasome subunit M655_011575 PF10431 C-terminal, D2-small domain, of ClpB protein M655_011575 PF07724 AAA domain (Cdc48 subfamily) M655_011575 PF00004 ATPase family associated with various cellular activities (AAA) M655_011580 PF06018 CodY GAF-like domain M655_011580 PF08222 CodY helix-turn-helix domain M655_011585 PF00460 Flagella basal body rod protein M655_011590 PF00460 Flagella basal body rod protein M655_011590 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M655_011595 PF02049 Flagellar hook-basal body complex protein FliE M655_011600 PF01514 Secretory protein of YscJ/FliF family M655_011600 PF08345 Flagellar M-ring protein C-terminal M655_011605 PF14842 FliG N-terminal domain M655_011605 PF14841 FliG middle domain M655_011605 PF01706 FliG C-terminal domain M655_011610 PF02108 Flagellar assembly protein FliH M655_011615 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain M655_011615 PF02874 ATP synthase alpha/beta family, beta-barrel domain M655_011615 PF18269 T3SS EscN ATPase C-terminal domain M655_011640 PF00460 Flagella basal body rod protein M655_011640 PF06429 Flagellar basal body rod FlgEFG protein C-terminal M655_011655 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M655_011655 PF02154 Flagellar motor switch protein FliM M655_011660 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term M655_011660 PF04509 CheC-like family M655_011665 PF00072 Response regulator receiver domain M655_011670 PF04347 Flagellar biosynthesis protein, FliO M655_011675 PF00813 FliP family M655_011680 PF01313 Bacterial export proteins, family 3 M655_011685 PF01311 Bacterial export proteins, family 1 M655_011690 PF01312 FlhB HrpN YscU SpaS Family M655_011695 PF00771 FHIPEP family M655_011700 PF00448 SRP54-type protein, GTPase domain M655_011705 PF10609 NUBPL iron-transfer P-loop NTPase M655_011710 PF01339 CheB methylesterase M655_011710 PF00072 Response regulator receiver domain M655_011715 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_011715 PF02895 Signal transducing histidine kinase, homodimeric domain M655_011715 PF01584 CheW-like domain M655_011715 PF07194 P2 response regulator binding domain M655_011715 PF01627 Hpt domain M655_011720 PF01584 CheW-like domain M655_011725 PF04509 CheC-like family M655_011730 PF03975 CheD chemotactic sensory transduction M655_011740 PF04542 Sigma-70 region 2 M655_011740 PF04539 Sigma-70 region 3 M655_011740 PF04545 Sigma-70, region 4 M655_011765 PF00318 Ribosomal protein S2 M655_011770 PF00889 Elongation factor TS M655_011775 PF00696 Amino acid kinase family M655_011780 PF01765 Ribosome recycling factor M655_011785 PF01255 Putative undecaprenyl diphosphate synthase M655_011795 PF13288 DXP reductoisomerase C-terminal domain M655_011795 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase M655_011795 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain M655_011800 PF02163 Peptidase family M50 M655_011800 PF13180 PDZ domain M655_011805 PF04551 GcpE protein M655_011810 PF04073 Aminoacyl-tRNA editing domain M655_011810 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M655_011810 PF03129 Anticodon binding domain M655_011815 PF02811 PHP domain M655_011815 PF00929 Exonuclease M655_011815 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M655_011815 PF07733 Bacterial DNA polymerase III alpha NTPase domain M655_011815 PF11490 DNA polymerase III polC-type N-terminus II M655_011815 PF14579 Helix-hairpin-helix motif M655_011815 PF14480 DNA polymerase III polC-type N-terminus I M655_011820 PF17384 RimP C-terminal SH3 domain M655_011820 PF02576 RimP N-terminal domain M655_011825 PF08529 NusA N-terminal domain M655_011825 PF00575 S1 RNA binding domain M655_011825 PF13184 NusA-like KH domain M655_011835 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family M655_011840 PF04760 Translation initiation factor IF-2, N-terminal region M655_011840 PF00009 Elongation factor Tu GTP binding domain M655_011840 PF04760 Translation initiation factor IF-2, N-terminal region M655_011840 PF11987 Translation-initiation factor 2 M655_011840 PF00009 Elongation factor Tu GTP binding domain M655_011840 PF11987 Translation-initiation factor 2 M655_011850 PF02033 Ribosome-binding factor A M655_011855 PF01368 DHH family M655_011855 PF02272 DHHA1 domain M655_011860 PF16198 tRNA pseudouridylate synthase B C-terminal domain M655_011860 PF01509 TruB family pseudouridylate synthase (N terminal domain) M655_011865 PF06574 FAD synthetase M655_011865 PF01687 Riboflavin kinase M655_011870 PF00312 Ribosomal protein S15 M655_011875 PF00575 S1 RNA binding domain M655_011875 PF00013 KH domain M655_011875 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain M655_011875 PF01138 3' exoribonuclease family, domain 1 M655_011875 PF03725 3' exoribonuclease family, domain 2 M655_011880 PF01522 Polysaccharide deacetylase M655_011885 PF05193 Peptidase M16 inactive domain M655_011885 PF00675 Insulinase (Peptidase family M16) M655_011895 PF01262 Alanine dehydrogenase/PNT, C-terminal domain M655_011895 PF16924 Dipicolinate synthase subunit A N-terminal domain M655_011900 PF02441 Flavoprotein M655_011905 PF02774 Semialdehyde dehydrogenase, dimerisation domain M655_011905 PF01118 Semialdehyde dehydrogenase, NAD binding domain M655_011910 PF00696 Amino acid kinase family M655_011910 PF13840 ACT domain M655_011915 PF00701 Dihydrodipicolinate synthetase family M655_011920 PF17770 Ribonuclease J C-terminal domain M655_011920 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain M655_011920 PF00753 Metallo-beta-lactamase superfamily M655_011925 PF00574 Clp protease M655_011935 PF01580 FtsK/SpoIIIE family M655_011935 PF17854 FtsK alpha domain M655_011935 PF09397 Ftsk gamma domain M655_011940 PF00392 Bacterial regulatory proteins, gntR family M655_011940 PF07702 UTRA domain M655_011965 PF01551 Peptidase family M23 M655_011970 PF05193 Peptidase M16 inactive domain M655_011975 PF00675 Insulinase (Peptidase family M16) M655_011975 PF05193 Peptidase M16 inactive domain M655_011985 PF11588 Protein of unknown function (DUF3243) M655_011995 PF11868 Protein of unknown function (DUF3388) M655_012000 PF13464 Domain of unknown function (DUF4115) M655_012005 PF04055 Radical SAM superfamily M655_012005 PF00919 Uncharacterized protein family UPF0004 M655_012005 PF18693 TRAM domain M655_012010 PF01066 CDP-alcohol phosphatidyltransferase M655_012015 PF02464 Competence-damaged protein M655_012015 PF18146 Damage-inducible protein CinA KH domain M655_012015 PF00994 Probable molybdopterin binding domain M655_012020 PF00270 DEAD/DEAH box helicase M655_012020 PF00271 Helicase conserved C-terminal domain M655_012025 PF00154 recA bacterial DNA recombination protein M655_012030 PF02631 RecX family M655_012035 PF12072 Domain of unknown function (DUF3552) M655_012035 PF01966 HD domain M655_012035 PF00013 KH domain M655_012040 PF13277 YmdB-like protein M655_012045 PF04232 Stage V sporulation protein S (SpoVS) M655_012055 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase M655_012055 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg M655_012055 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II M655_012060 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M655_012070 PF12706 Beta-lactamase superfamily domain M655_012075 PF06962 Putative rRNA methylase M655_012095 PF03099 Biotin/lipoate A/B protein ligase family M655_012100 PF02018 Carbohydrate binding domain M655_012100 PF00395 S-layer homology domain M655_012100 PF06452 Carbohydrate family 9 binding domain-like M655_012100 PF00331 Glycosyl hydrolase family 10 M655_012105 PF01938 TRAM domain M655_012105 PF04055 Radical SAM superfamily M655_012105 PF00919 Uncharacterized protein family UPF0004 M655_012110 PF06133 Control of competence regulator ComK, YlbF/YmcA M655_012115 PF10628 Outer spore coat protein E (CotE) M655_012125 PF00488 MutS domain V M655_012125 PF01624 MutS domain I M655_012125 PF05192 MutS domain III M655_012125 PF05190 MutS family domain IV M655_012130 PF01119 DNA mismatch repair protein, C-terminal domain M655_012130 PF08676 MutL C terminal dimerisation domain M655_012135 PF04445 Putative SAM-dependent methyltransferase M655_012145 PF17209 Hfq protein M655_012175 PF06983 3-demethylubiquinone-9 3-methyltransferase M655_012180 PF07690 Major Facilitator Superfamily M655_012190 PF05198 Translation initiation factor IF-3, N-terminal domain M655_012190 PF00707 Translation initiation factor IF-3, C-terminal domain M655_012200 PF00004 ATPase family associated with various cellular activities (AAA) M655_012200 PF17866 AAA lid domain M655_012210 PF06838 Methionine gamma-lyase M655_012215 PF13411 MerR HTH family regulatory protein M655_012220 PF03951 Glutamine synthetase, beta-Grasp domain M655_012220 PF00120 Glutamine synthetase, catalytic domain M655_012230 PF00376 MerR family regulatory protein M655_012230 PF09278 MerR, DNA binding M655_012270 PF01726 LexA DNA binding domain M655_012270 PF00717 Peptidase S24-like M655_012275 PF01476 LysM domain M655_012275 PF05257 CHAP domain M655_012280 PF05979 Bacterial protein of unknown function (DUF896) M655_012285 PF02537 CrcB-like protein, Camphor Resistance (CrcB) M655_012290 PF13538 UvrD-like helicase C-terminal domain M655_012295 PF01521 Iron-sulphur cluster biosynthesis M655_012300 PF01212 Beta-eliminating lyase M655_012320 PF00676 Dehydrogenase E1 component M655_012325 PF02779 Transketolase, pyrimidine binding domain M655_012325 PF02780 Transketolase, C-terminal domain M655_012330 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M655_012330 PF00364 Biotin-requiring enzyme M655_012330 PF02817 e3 binding domain M655_012335 PF07992 Pyridine nucleotide-disulphide oxidoreductase M655_012335 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M655_012360 PF12848 ABC transporter M655_012360 PF00005 ABC transporter M655_012370 PF12708 Pectate lyase superfamily protein M655_012370 PF09992 Phosphodiester glycosidase M655_012375 PF00270 DEAD/DEAH box helicase M655_012375 PF00271 Helicase conserved C-terminal domain M655_012380 PF00324 Amino acid permease M655_012385 PF03793 PASTA domain M655_012385 PF00069 Protein kinase domain M655_012390 PF13039 Protein of unknown function (DUF3900) M655_012390 PF13037 Domain of unknown function (DUF3898) M655_012395 PF07285 Protein of unknown function (DUF1444) M655_012410 PF10720 Protein of unknown function (DUF2515) M655_012420 PF04284 Protein of unknown function (DUF441) M655_012445 PF07486 Cell Wall Hydrolase M655_012445 PF01471 Putative peptidoglycan binding domain M655_012450 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M655_012455 PF01053 Cys/Met metabolism PLP-dependent enzyme M655_012460 PF08281 Sigma-70, region 4 M655_012460 PF04542 Sigma-70 region 2 M655_012475 PF00005 ABC transporter M655_012500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_012500 PF00204 DNA gyrase B M655_012500 PF01751 Toprim domain M655_012500 PF00986 DNA gyrase B subunit, carboxyl terminus M655_012505 PF03989 DNA gyrase C-terminal domain, beta-propeller M655_012505 PF00521 DNA gyrase/topoisomerase IV, subunit A M655_012515 PF00881 Nitroreductase family M655_012520 PF00149 Calcineurin-like phosphoesterase M655_012525 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M655_012525 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M655_012535 PF01047 MarR family M655_012540 PF07690 Major Facilitator Superfamily M655_012545 PF17866 AAA lid domain M655_012545 PF00004 ATPase family associated with various cellular activities (AAA) M655_012550 PF00082 Subtilase family M655_012555 PF05651 Putative sugar diacid recognition M655_012555 PF17853 GGDEF-like domain M655_012555 PF13556 PucR C-terminal helix-turn-helix domain M655_012560 PF00171 Aldehyde dehydrogenase family M655_012565 PF00202 Aminotransferase class-III M655_012570 PF03819 MazG nucleotide pyrophosphohydrolase domain M655_012575 PF03641 Possible lysine decarboxylase M655_012600 PF07992 Pyridine nucleotide-disulphide oxidoreductase M655_012600 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster M655_012605 PF01180 Dihydroorotate dehydrogenase M655_012610 PF01979 Amidohydrolase family M655_012615 PF00795 Carbon-nitrogen hydrolase M655_012625 PF02743 Cache domain M655_012625 PF00672 HAMP domain M655_012625 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M655_012630 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin M655_012635 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase M655_012640 PF17203 Single cache domain 3 M655_012640 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_012640 PF00989 PAS fold M655_012640 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain M655_012645 PF00072 Response regulator receiver domain M655_012645 PF12431 Transcriptional regulator M655_012660 PF01970 Tripartite tricarboxylate transporter TctA family M655_012680 PF02581 Thiamine monophosphate synthase M655_012685 PF02581 Thiamine monophosphate synthase M655_012700 PF00512 His Kinase A (phospho-acceptor) domain M655_012700 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_012700 PF00989 PAS fold M655_012710 PF00196 Bacterial regulatory proteins, luxR family M655_012710 PF00072 Response regulator receiver domain M655_012715 PF07730 Histidine kinase M655_012725 PF00873 AcrB/AcrD/AcrF family M655_012735 PF02683 Cytochrome C biogenesis protein transmembrane region M655_012740 PF00578 AhpC/TSA family M655_012750 PF14174 YycC-like protein M655_012795 PF01381 Helix-turn-helix M655_012800 PF12833 Helix-turn-helix domain M655_012800 PF06719 AraC-type transcriptional regulator N-terminus M655_012810 PF00398 Ribosomal RNA adenine dimethylase M655_012845 PF13185 GAF domain M655_012850 PF01625 Peptide methionine sulfoxide reductase M655_012875 PF01596 O-methyltransferase M655_012900 PF01758 Sodium Bile acid symporter family M655_012965 PF00756 Putative esterase M655_012970 PF07972 NrdI Flavodoxin like M655_012975 PF02867 Ribonucleotide reductase, barrel domain M655_012975 PF00317 Ribonucleotide reductase, all-alpha domain M655_012975 PF08343 Ribonucleotide reductase N-terminal M655_012980 PF00268 Ribonucleotide reductase, small chain M655_012985 PF05525 Branched-chain amino acid transport protein M655_012990 PF08267 Cobalamin-independent synthase, N-terminal domain M655_012990 PF01717 Cobalamin-independent synthase, Catalytic domain M655_012995 PF03061 Thioesterase superfamily M655_013010 PF09587 Bacterial capsule synthesis protein PGA_cap M655_013020 PF00501 AMP-binding enzyme M655_013020 PF13193 AMP-binding enzyme C-terminal domain M655_013040 PF00085 Thioredoxin M655_013045 PF00704 Glycosyl hydrolases family 18 M655_013045 PF01476 LysM domain M655_013065 PF01411 tRNA synthetases class II (A) M655_013065 PF02272 DHHA1 domain M655_013065 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M655_013070 PF08810 Kinase associated protein B M655_013075 PF02597 ThiS family M655_013080 PF05690 Thiazole biosynthesis protein ThiG M655_013085 PF01546 Peptidase family M20/M25/M40 M655_013085 PF07687 Peptidase dimerisation domain M655_013090 PF03070 TENA/THI-4/PQQC family M655_013095 PF00005 ABC transporter M655_013100 PF00528 Binding-protein-dependent transport system inner membrane component M655_013105 PF09084 NMT1/THI5 like M655_013110 PF01022 Bacterial regulatory protein, arsR family M655_013115 PF13630 SdpI/YhfL protein family M655_013115 PF07853 Protein of unknown function (DUF1648) M655_013130 PF00005 ABC transporter M655_013130 PF13732 Domain of unknown function (DUF4162) M655_013155 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family M655_013160 PF02615 Malate/L-lactate dehydrogenase M655_013165 PF02261 Aspartate decarboxylase M655_013175 PF05525 Branched-chain amino acid transport protein M655_013180 PF03323 Bacillus/Clostridium GerA spore germination protein M655_013190 PF03845 Spore germination protein M655_013195 PF03845 Spore germination protein M655_013200 PF05504 Spore germination B3/ GerAC like, C-terminal M655_013205 PF01645 Conserved region in glutamate synthase M655_013205 PF13187 4Fe-4S dicluster domain M655_013210 PF09844 Uncharacterized conserved protein (COG2071) M655_013225 PF00892 EamA-like transporter family M655_013235 PF01327 Polypeptide deformylase M655_013245 PF00188 Cysteine-rich secretory protein family M655_013255 PF00313 'Cold-shock' DNA-binding domain M655_013280 PF06628 Catalase-related immune-responsive M655_013280 PF00199 Catalase M655_013295 PF11208 Protein of unknown function (DUF2992) M655_013315 PF00990 Diguanylate cyclase, GGDEF domain M655_013315 PF00563 EAL domain M655_013315 PF03707 Bacterial signalling protein N terminal repeat M655_013320 PF03449 Transcription elongation factor, N-terminal M655_013320 PF01272 Transcription elongation factor, GreA/GreB, C-term M655_013330 PF00248 Aldo/keto reductase family M655_013335 PF00158 Sigma-54 interaction domain M655_013335 PF01590 GAF domain M655_013340 PF00676 Dehydrogenase E1 component M655_013345 PF02779 Transketolase, pyrimidine binding domain M655_013345 PF02780 Transketolase, C-terminal domain M655_013350 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M655_013350 PF02817 e3 binding domain M655_013350 PF00364 Biotin-requiring enzyme M655_013355 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M655_013355 PF07992 Pyridine nucleotide-disulphide oxidoreductase M655_013360 PF01645 Conserved region in glutamate synthase M655_013360 PF13187 4Fe-4S dicluster domain M655_013365 PF17329 Family of unknown function (DUF5367) M655_013370 PF01497 Periplasmic binding protein M655_013370 PF12833 Helix-turn-helix domain M655_013375 PF01497 Periplasmic binding protein M655_013385 PF00067 Cytochrome P450 M655_013400 PF13193 AMP-binding enzyme C-terminal domain M655_013400 PF00501 AMP-binding enzyme M655_013400 PF00668 Condensation domain M655_013400 PF00550 Phosphopantetheine attachment site M655_013405 PF00005 ABC transporter M655_013405 PF00664 ABC transporter transmembrane region M655_013410 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain M655_013410 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain M655_013425 PF13847 Methyltransferase domain M655_013430 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M655_013430 PF02770 Acyl-CoA dehydrogenase, middle domain M655_013430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M655_013435 PF13193 AMP-binding enzyme C-terminal domain M655_013435 PF00668 Condensation domain M655_013435 PF00550 Phosphopantetheine attachment site M655_013435 PF00501 AMP-binding enzyme M655_013440 PF00668 Condensation domain M655_013440 PF02801 Beta-ketoacyl synthase, C-terminal domain M655_013440 PF00109 Beta-ketoacyl synthase, N-terminal domain M655_013440 PF00550 Phosphopantetheine attachment site M655_013440 PF16197 Ketoacyl-synthetase C-terminal extension M655_013440 PF00698 Acyl transferase domain M655_013450 PF00501 AMP-binding enzyme M655_013450 PF00202 Aminotransferase class-III M655_013450 PF00668 Condensation domain M655_013450 PF16197 Ketoacyl-synthetase C-terminal extension M655_013450 PF00550 Phosphopantetheine attachment site M655_013450 PF02801 Beta-ketoacyl synthase, C-terminal domain M655_013450 PF00109 Beta-ketoacyl synthase, N-terminal domain M655_013450 PF13193 AMP-binding enzyme C-terminal domain M655_013455 PF00668 Condensation domain M655_013455 PF13193 AMP-binding enzyme C-terminal domain M655_013455 PF00550 Phosphopantetheine attachment site M655_013455 PF00501 AMP-binding enzyme M655_013460 PF13193 AMP-binding enzyme C-terminal domain M655_013460 PF00668 Condensation domain M655_013460 PF00550 Phosphopantetheine attachment site M655_013460 PF00501 AMP-binding enzyme M655_013470 PF02801 Beta-ketoacyl synthase, C-terminal domain M655_013470 PF02801 Beta-ketoacyl synthase, C-terminal domain M655_013470 PF08659 KR domain M655_013470 PF00109 Beta-ketoacyl synthase, N-terminal domain M655_013470 PF00550 Phosphopantetheine attachment site M655_013470 PF14765 Polyketide synthase dehydratase M655_013470 PF00109 Beta-ketoacyl synthase, N-terminal domain M655_013470 PF16197 Ketoacyl-synthetase C-terminal extension M655_013470 PF16197 Ketoacyl-synthetase C-terminal extension M655_013470 PF14765 Polyketide synthase dehydratase M655_013470 PF00550 Phosphopantetheine attachment site M655_013470 PF08659 KR domain M655_013475 PF16197 Ketoacyl-synthetase C-terminal extension M655_013475 PF00109 Beta-ketoacyl synthase, N-terminal domain M655_013475 PF02801 Beta-ketoacyl synthase, C-terminal domain M655_013475 PF00550 Phosphopantetheine attachment site M655_013475 PF00668 Condensation domain M655_013475 PF13193 AMP-binding enzyme C-terminal domain M655_013475 PF00501 AMP-binding enzyme M655_013475 PF00202 Aminotransferase class-III M655_013480 PF02801 Beta-ketoacyl synthase, C-terminal domain M655_013480 PF00550 Phosphopantetheine attachment site M655_013480 PF00109 Beta-ketoacyl synthase, N-terminal domain M655_013480 PF16197 Ketoacyl-synthetase C-terminal extension M655_013480 PF00698 Acyl transferase domain M655_013480 PF00668 Condensation domain M655_013485 PF01220 Dehydroquinase class II M655_013490 PF00005 ABC transporter M655_013490 PF17760 UvrA interaction domain M655_013490 PF17755 UvrA DNA-binding domain M655_013500 PF00550 Phosphopantetheine attachment site M655_013515 PF00975 Thioesterase domain M655_013520 PF00501 AMP-binding enzyme M655_013520 PF13193 AMP-binding enzyme C-terminal domain M655_013520 PF00668 Condensation domain M655_013520 PF16197 Ketoacyl-synthetase C-terminal extension M655_013520 PF00550 Phosphopantetheine attachment site M655_013520 PF02801 Beta-ketoacyl synthase, C-terminal domain M655_013520 PF00109 Beta-ketoacyl synthase, N-terminal domain M655_013520 PF00202 Aminotransferase class-III M655_013525 PF13419 Haloacid dehalogenase-like hydrolase M655_013530 PF00550 Phosphopantetheine attachment site M655_013530 PF00698 Acyl transferase domain M655_013530 PF16197 Ketoacyl-synthetase C-terminal extension M655_013530 PF02801 Beta-ketoacyl synthase, C-terminal domain M655_013530 PF00109 Beta-ketoacyl synthase, N-terminal domain M655_013530 PF00668 Condensation domain M655_013535 PF00550 Phosphopantetheine attachment site M655_013535 PF00668 Condensation domain M655_013535 PF00975 Thioesterase domain M655_013535 PF13193 AMP-binding enzyme C-terminal domain M655_013535 PF00501 AMP-binding enzyme M655_013540 PF00698 Acyl transferase domain M655_013545 PF00550 Phosphopantetheine attachment site M655_013545 PF16197 Ketoacyl-synthetase C-terminal extension M655_013545 PF00109 Beta-ketoacyl synthase, N-terminal domain M655_013545 PF02801 Beta-ketoacyl synthase, C-terminal domain M655_013545 PF08659 KR domain M655_013545 PF08242 Methyltransferase domain M655_013545 PF14765 Polyketide synthase dehydratase M655_013550 PF16197 Ketoacyl-synthetase C-terminal extension M655_013550 PF00550 Phosphopantetheine attachment site M655_013550 PF08242 Methyltransferase domain M655_013550 PF08659 KR domain M655_013550 PF00109 Beta-ketoacyl synthase, N-terminal domain M655_013550 PF14765 Polyketide synthase dehydratase M655_013550 PF02801 Beta-ketoacyl synthase, C-terminal domain M655_013555 PF00202 Aminotransferase class-III M655_013555 PF00550 Phosphopantetheine attachment site M655_013555 PF02801 Beta-ketoacyl synthase, C-terminal domain M655_013555 PF00109 Beta-ketoacyl synthase, N-terminal domain M655_013555 PF00501 AMP-binding enzyme M655_013555 PF16197 Ketoacyl-synthetase C-terminal extension M655_013555 PF13193 AMP-binding enzyme C-terminal domain M655_013555 PF00668 Condensation domain M655_013565 PF00501 AMP-binding enzyme M655_013565 PF16197 Ketoacyl-synthetase C-terminal extension M655_013565 PF00109 Beta-ketoacyl synthase, N-terminal domain M655_013565 PF02801 Beta-ketoacyl synthase, C-terminal domain M655_013565 PF08659 KR domain M655_013565 PF00550 Phosphopantetheine attachment site M655_013565 PF00668 Condensation domain M655_013565 PF14765 Polyketide synthase dehydratase M655_013565 PF13193 AMP-binding enzyme C-terminal domain M655_013570 PF00109 Beta-ketoacyl synthase, N-terminal domain M655_013570 PF16197 Ketoacyl-synthetase C-terminal extension M655_013570 PF02801 Beta-ketoacyl synthase, C-terminal domain M655_013570 PF14765 Polyketide synthase dehydratase M655_013570 PF08659 KR domain M655_013570 PF00550 Phosphopantetheine attachment site M655_013570 PF08242 Methyltransferase domain M655_013580 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M655_013580 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M655_013585 PF00480 ROK family M655_013585 PF01047 MarR family M655_013590 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family M655_013595 PF13193 AMP-binding enzyme C-terminal domain M655_013595 PF00668 Condensation domain M655_013595 PF00501 AMP-binding enzyme M655_013595 PF00975 Thioesterase domain M655_013595 PF00550 Phosphopantetheine attachment site M655_013600 PF00668 Condensation domain M655_013600 PF00501 AMP-binding enzyme M655_013600 PF13193 AMP-binding enzyme C-terminal domain M655_013600 PF00550 Phosphopantetheine attachment site M655_013600 PF00975 Thioesterase domain M655_013605 PF13302 Acetyltransferase (GNAT) domain M655_013610 PF01648 4'-phosphopantetheinyl transferase superfamily M655_013615 PF02357 Transcription termination factor nusG M655_013630 PF00501 AMP-binding enzyme M655_013630 PF13193 AMP-binding enzyme C-terminal domain M655_013630 PF00668 Condensation domain M655_013630 PF00550 Phosphopantetheine attachment site M655_013635 PF00668 Condensation domain M655_013635 PF00501 AMP-binding enzyme M655_013635 PF13193 AMP-binding enzyme C-terminal domain M655_013635 PF00550 Phosphopantetheine attachment site M655_013645 PF00005 ABC transporter M655_013645 PF00664 ABC transporter transmembrane region M655_013650 PF00005 ABC transporter M655_013650 PF00664 ABC transporter transmembrane region M655_013655 PF00975 Thioesterase domain M655_013665 PF00005 ABC transporter M655_013665 PF17755 UvrA DNA-binding domain M655_013665 PF17760 UvrA interaction domain M655_013670 PF04072 Leucine carboxyl methyltransferase M655_013680 PF01048 Phosphorylase superfamily M655_013695 PF00768 D-alanyl-D-alanine carboxypeptidase M655_013695 PF07943 Penicillin-binding protein 5, C-terminal domain M655_013700 PF04607 Region found in RelA / SpoT proteins M655_013705 PF10145 Phage-related minor tail protein M655_013705 PF01464 Transglycosylase SLT domain M655_013705 PF01551 Peptidase family M23 M655_013720 PF00269 Small, acid-soluble spore proteins, alpha/beta type M655_013725 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M655_013725 PF01367 5'-3' exonuclease, C-terminal SAM fold M655_013755 PF12592 Protein of unknown function (DUF3763) M655_013755 PF17868 AAA lid domain M655_013755 PF07728 AAA domain (dynein-related subfamily) M655_013790 PF02696 Uncharacterized ACR, YdiU/UPF0061 family M655_013820 PF07690 Major Facilitator Superfamily M655_013825 PF01497 Periplasmic binding protein M655_013830 PF02195 ParB-like nuclease domain M655_013835 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain M655_013835 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M655_013840 PF03328 HpcH/HpaI aldolase/citrate lyase family M655_013845 PF04183 IucA / IucC family M655_013845 PF06276 Ferric iron reductase FhuF-like transporter M655_013850 PF04183 IucA / IucC family M655_013850 PF06276 Ferric iron reductase FhuF-like transporter M655_013855 PF07690 Major Facilitator Superfamily M655_013855 PF00083 Sugar (and other) transporter M655_013860 PF04183 IucA / IucC family M655_013860 PF06276 Ferric iron reductase FhuF-like transporter M655_013865 PF02423 Ornithine cyclodeaminase/mu-crystallin family M655_013870 PF00291 Pyridoxal-phosphate dependent enzyme M655_013890 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M655_013890 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M655_013895 PF00563 EAL domain M655_013895 PF12792 CSS motif domain associated with EAL M655_013900 PF01451 Low molecular weight phosphotyrosine protein phosphatase M655_013905 PF01758 Sodium Bile acid symporter family M655_013910 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M655_013915 PF01022 Bacterial regulatory protein, arsR family M655_013920 PF03534 Salmonella virulence plasmid 65kDa B protein M655_013920 PF12255 Insecticide toxin TcdB middle/C-terminal region M655_013920 PF12256 Insecticide toxin TcdB middle/N-terminal region M655_013930 PF00528 Binding-protein-dependent transport system inner membrane component M655_013935 PF00528 Binding-protein-dependent transport system inner membrane component M655_013940 PF01547 Bacterial extracellular solute-binding protein M655_013945 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M655_013945 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M655_013950 PF01261 Xylose isomerase-like TIM barrel M655_013955 PF00356 Bacterial regulatory proteins, lacI family M655_013960 PF13188 PAS domain M655_013960 PF00989 PAS fold M655_013960 PF00512 His Kinase A (phospho-acceptor) domain M655_013960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_013960 PF13426 PAS domain M655_013970 PF00107 Zinc-binding dehydrogenase M655_013970 PF08240 Alcohol dehydrogenase GroES-like domain M655_013975 PF00171 Aldehyde dehydrogenase family M655_013980 PF00158 Sigma-54 interaction domain M655_013980 PF13426 PAS domain M655_013980 PF02954 Bacterial regulatory protein, Fis family M655_013985 PF08664 YcbB domain M655_013985 PF00072 Response regulator receiver domain M655_013990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_013995 PF04960 Glutaminase M655_014000 PF01235 Sodium:alanine symporter family M655_014030 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M655_014030 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain M655_014035 PF01418 Helix-turn-helix domain, rpiR family M655_014035 PF01380 SIS domain M655_014040 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M655_014040 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M655_014045 PF02447 GntP family permease M655_014055 PF13302 Acetyltransferase (GNAT) domain M655_014060 PF04898 Glutamate synthase central domain M655_014060 PF01645 Conserved region in glutamate synthase M655_014060 PF00310 Glutamine amidotransferases class-II M655_014060 PF01493 GXGXG motif M655_014065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M655_014065 PF03466 LysR substrate binding domain M655_014070 PF13508 Acetyltransferase (GNAT) domain M655_014070 PF00583 Acetyltransferase (GNAT) family M655_014075 PF03180 NLPA lipoprotein M655_014080 PF00528 Binding-protein-dependent transport system inner membrane component M655_014085 PF09383 NIL domain M655_014085 PF00005 ABC transporter M655_014090 PF07687 Peptidase dimerisation domain M655_014090 PF01546 Peptidase family M20/M25/M40 M655_014095 PF00296 Luciferase-like monooxygenase M655_014100 PF03180 NLPA lipoprotein M655_014105 PF00528 Binding-protein-dependent transport system inner membrane component M655_014110 PF00005 ABC transporter M655_014110 PF09383 NIL domain M655_014115 PF00462 Glutaredoxin M655_014120 PF00296 Luciferase-like monooxygenase M655_014130 PF00296 Luciferase-like monooxygenase M655_014135 PF04073 Aminoacyl-tRNA editing domain M655_014140 PF13936 Helix-turn-helix domain M655_014140 PF00665 Integrase core domain M655_014145 PF05762 VWA domain containing CoxE-like protein M655_014160 PF03301 Tryptophan 2,3-dioxygenase M655_014165 PF01979 Amidohydrolase family M655_014170 PF09335 SNARE associated Golgi protein M655_014175 PF02080 TrkA-C domain M655_014180 PF00999 Sodium/hydrogen exchanger family M655_014185 PF00881 Nitroreductase family M655_014205 PF09335 SNARE associated Golgi protein M655_014215 PF12697 Alpha/beta hydrolase family M655_014240 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M655_014240 PF00289 Biotin carboxylase, N-terminal domain M655_014240 PF02785 Biotin carboxylase C-terminal domain M655_014245 PF00364 Biotin-requiring enzyme M655_014250 PF01039 Carboxyl transferase domain M655_014260 PF02310 B12 binding domain M655_014260 PF01642 Methylmalonyl-CoA mutase M655_014265 PF01642 Methylmalonyl-CoA mutase M655_014270 PF00364 Biotin-requiring enzyme M655_014275 PF00440 Bacterial regulatory proteins, tetR family M655_014280 PF02557 D-alanyl-D-alanine carboxypeptidase M655_014285 PF01758 Sodium Bile acid symporter family M655_014290 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M655_014295 PF01641 SelR domain M655_014295 PF01625 Peptide methionine sulfoxide reductase M655_014300 PF01546 Peptidase family M20/M25/M40 M655_014300 PF07687 Peptidase dimerisation domain M655_014305 PF07676 WD40-like Beta Propeller Repeat M655_014305 PF00326 Prolyl oligopeptidase family M655_014310 PF00326 Prolyl oligopeptidase family M655_014310 PF07676 WD40-like Beta Propeller Repeat M655_014310 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region M655_014315 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M655_014320 PF00005 ABC transporter M655_014320 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M655_014325 PF00005 ABC transporter M655_014325 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M655_014330 PF00528 Binding-protein-dependent transport system inner membrane component M655_014330 PF12911 N-terminal TM domain of oligopeptide transport permease C M655_014335 PF00528 Binding-protein-dependent transport system inner membrane component M655_014345 PF00892 EamA-like transporter family M655_014350 PF00296 Luciferase-like monooxygenase M655_014360 PF01757 Acyltransferase family M655_014385 PF00394 Multicopper oxidase M655_014385 PF07731 Multicopper oxidase M655_014385 PF07732 Multicopper oxidase M655_014390 PF13307 Helicase C-terminal domain M655_014405 PF08439 Oligopeptidase F M655_014405 PF01432 Peptidase family M3 M655_014410 PF02073 Thermophilic metalloprotease (M29) M655_014415 PF10372 Bacterial membrane-spanning protein N-terminus M655_014415 PF02457 DisA bacterial checkpoint controller nucleotide-binding M655_014420 PF03746 LamB/YcsF family M655_014425 PF02626 Carboxyltransferase domain, subdomain A and B M655_014430 PF02682 Carboxyltransferase domain, subdomain C and D M655_014435 PF01470 Pyroglutamyl peptidase M655_014440 PF01614 Bacterial transcriptional regulator M655_014440 PF09339 IclR helix-turn-helix domain M655_014460 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 M655_014460 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) M655_014475 PF12419 SNF2 Helicase protein M655_014475 PF00271 Helicase conserved C-terminal domain M655_014475 PF00176 SNF2 family N-terminal domain M655_014505 PF07690 Major Facilitator Superfamily M655_014510 PF01810 LysE type translocator M655_014515 PF00512 His Kinase A (phospho-acceptor) domain M655_014515 PF13426 PAS domain M655_014515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_014515 PF00672 HAMP domain M655_014520 PF00486 Transcriptional regulatory protein, C terminal M655_014520 PF00072 Response regulator receiver domain M655_014525 PF09335 SNARE associated Golgi protein M655_014530 PF06445 GyrI-like small molecule binding domain M655_014540 PF08279 HTH domain M655_014540 PF13280 WYL domain M655_014550 PF05985 Ethanolamine ammonia-lyase light chain (EutC) M655_014555 PF06751 Ethanolamine ammonia lyase large subunit (EutB) M655_014560 PF00072 Response regulator receiver domain M655_014560 PF03861 ANTAR domain M655_014565 PF02082 Transcriptional regulator M655_014580 PF01230 HIT domain M655_014590 PF00704 Glycosyl hydrolases family 18 M655_014595 PF00583 Acetyltransferase (GNAT) family M655_014605 PF01370 NAD dependent epimerase/dehydratase family M655_014610 PF00155 Aminotransferase class I and II M655_014620 PF13495 Phage integrase, N-terminal SAM-like domain M655_014620 PF00589 Phage integrase family M655_014625 PF05067 Manganese containing catalase M655_014635 PF00912 Transglycosylase M655_014635 PF00905 Penicillin binding protein transpeptidase domain M655_014640 PF13193 AMP-binding enzyme C-terminal domain M655_014640 PF00501 AMP-binding enzyme M655_014645 PF00877 NlpC/P60 family M655_014650 PF01557 Fumarylacetoacetate (FAA) hydrolase family M655_014660 PF04294 VanW like protein M655_014670 PF00391 PEP-utilising enzyme, mobile domain M655_014670 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain M655_014675 PF01497 Periplasmic binding protein M655_014685 PF01497 Periplasmic binding protein M655_014685 PF12833 Helix-turn-helix domain M655_014705 PF08239 Bacterial SH3 domain M655_014705 PF01476 LysM domain M655_014705 PF08239 Bacterial SH3 domain M655_014705 PF01476 LysM domain M655_014705 PF00877 NlpC/P60 family M655_014705 PF00877 NlpC/P60 family M655_014715 PF08439 Oligopeptidase F M655_014715 PF01432 Peptidase family M3 M655_014720 PF01546 Peptidase family M20/M25/M40 M655_014720 PF07687 Peptidase dimerisation domain M655_014725 PF03576 Peptidase family S58 M655_014730 PF12822 ECF transporter, substrate-specific component M655_014735 PF02361 Cobalt transport protein M655_014740 PF00005 ABC transporter M655_014745 PF00005 ABC transporter M655_014750 PF02954 Bacterial regulatory protein, Fis family M655_014750 PF00158 Sigma-54 interaction domain M655_014750 PF00989 PAS fold M655_014765 PF00583 Acetyltransferase (GNAT) family M655_014770 PF00795 Carbon-nitrogen hydrolase M655_014770 PF00583 Acetyltransferase (GNAT) family M655_014775 PF01546 Peptidase family M20/M25/M40 M655_014775 PF07687 Peptidase dimerisation domain M655_014780 PF07969 Amidohydrolase family M655_014785 PF00474 Sodium:solute symporter family M655_014790 PF11755 Protein of unknown function (DUF3311) M655_014795 PF07905 Purine catabolism regulatory protein-like family M655_014795 PF13556 PucR C-terminal helix-turn-helix domain M655_014795 PF17853 GGDEF-like domain M655_014805 PF00005 ABC transporter M655_014805 PF12848 ABC transporter M655_014810 PF12857 TOBE-like domain M655_014810 PF00005 ABC transporter M655_014810 PF17850 CysA C-terminal regulatory domain M655_014815 PF00528 Binding-protein-dependent transport system inner membrane component M655_014820 PF00528 Binding-protein-dependent transport system inner membrane component M655_014845 PF00692 dUTPase M655_014860 PF00293 NUDIX domain M655_014860 PF09297 NADH pyrophosphatase zinc ribbon domain M655_014865 PF13419 Haloacid dehalogenase-like hydrolase M655_014870 PF01425 Amidase M655_014890 PF00291 Pyridoxal-phosphate dependent enzyme M655_014895 PF00583 Acetyltransferase (GNAT) family M655_014925 PF00795 Carbon-nitrogen hydrolase M655_014935 PF01479 S4 domain M655_014935 PF00849 RNA pseudouridylate synthase M655_014940 PF00085 Thioredoxin M655_014945 PF03466 LysR substrate binding domain M655_014945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M655_014950 PF00330 Aconitase family (aconitate hydratase) M655_014955 PF00694 Aconitase C-terminal domain M655_014960 PF00583 Acetyltransferase (GNAT) family M655_014965 PF13193 AMP-binding enzyme C-terminal domain M655_014965 PF00501 AMP-binding enzyme M655_014975 PF04461 Protein of unknown function (DUF520) M655_014985 PF00873 AcrB/AcrD/AcrF family M655_014995 PF01432 Peptidase family M3 M655_014995 PF08439 Oligopeptidase F M655_015000 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M655_015000 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M655_015000 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M655_015005 PF00534 Glycosyl transferases group 1 M655_015005 PF13439 Glycosyltransferase Family 4 M655_015010 PF01370 NAD dependent epimerase/dehydratase family M655_015015 PF00535 Glycosyl transferase family 2 M655_015020 PF00483 Nucleotidyl transferase M655_015025 PF13579 Glycosyl transferase 4-like domain M655_015025 PF00534 Glycosyl transferases group 1 M655_015035 PF07261 Replication initiation and membrane attachment M655_015040 PF01336 OB-fold nucleic acid binding domain M655_015040 PF00152 tRNA synthetases class II (D, K and N) M655_015055 PF06480 FtsH Extracellular M655_015055 PF01434 Peptidase family M41 M655_015055 PF17862 AAA+ lid domain M655_015055 PF00004 ATPase family associated with various cellular activities (AAA) M655_015075 PF01979 Amidohydrolase family M655_015080 PF06971 Putative DNA-binding protein N-terminus M655_015080 PF02629 CoA binding domain M655_015090 PF13307 Helicase C-terminal domain M655_015090 PF00929 Exonuclease M655_015090 PF04851 Type III restriction enzyme, res subunit M655_015100 PF02261 Aspartate decarboxylase M655_015105 PF02569 Pantoate-beta-alanine ligase M655_015110 PF02548 Ketopantoate hydroxymethyltransferase M655_015115 PF03099 Biotin/lipoate A/B protein ligase family M655_015115 PF08279 HTH domain M655_015115 PF02237 Biotin protein ligase C terminal domain M655_015120 PF01743 Poly A polymerase head domain M655_015120 PF13735 tRNA nucleotidyltransferase domain 2 putative M655_015120 PF12627 Probable RNA and SrmB- binding site of polymerase A M655_015125 PF13439 Glycosyltransferase Family 4 M655_015125 PF00534 Glycosyl transferases group 1 M655_015130 PF02585 GlcNAc-PI de-N-acetylase M655_015135 PF02142 MGS-like domain M655_015140 PF05173 Dihydrodipicolinate reductase, C-terminus M655_015140 PF01113 Dihydrodipicolinate reductase, N-terminus M655_015145 PF03819 MazG nucleotide pyrophosphohydrolase domain M655_015150 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 M655_015150 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) M655_015165 PF00032 Cytochrome b(C-terminal)/b6/petD M655_015165 PF13442 Cytochrome C oxidase, cbb3-type, subunit III M655_015170 PF00033 Cytochrome b/b6/petB M655_015175 PF00355 Rieske [2Fe-2S] domain M655_015205 PF04542 Sigma-70 region 2 M655_015205 PF08281 Sigma-70, region 4 M655_015210 PF01979 Amidohydrolase family M655_015215 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) M655_015220 PF02153 Prephenate dehydrogenase M655_015220 PF01842 ACT domain M655_015225 PF00155 Aminotransferase class I and II M655_015230 PF00290 Tryptophan synthase alpha chain M655_015235 PF00291 Pyridoxal-phosphate dependent enzyme M655_015240 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase M655_015245 PF00218 Indole-3-glycerol phosphate synthase M655_015250 PF02885 Glycosyl transferase family, helical bundle domain M655_015250 PF00591 Glycosyl transferase family, a/b domain M655_015255 PF04715 Anthranilate synthase component I, N terminal region M655_015255 PF00425 chorismate binding enzyme M655_015260 PF07736 Chorismate mutase type I M655_015265 PF01761 3-dehydroquinate synthase M655_015270 PF01264 Chorismate synthase M655_015275 PF01739 CheR methyltransferase, SAM binding domain M655_015275 PF03705 CheR methyltransferase, all-alpha domain M655_015280 PF00334 Nucleoside diphosphate kinase M655_015285 PF00348 Polyprenyl synthetase M655_015300 PF01040 UbiA prenyltransferase family M655_015305 PF01209 ubiE/COQ5 methyltransferase family M655_015310 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 M655_015320 PF02081 Tryptophan RNA-binding attenuator protein M655_015325 PF01464 Transglycosylase SLT domain M655_015340 PF13005 zinc-finger binding domain of transposase IS66 M655_015340 PF13007 Transposase C of IS166 homeodomain M655_015340 PF03050 Transposase IS66 family M655_015340 PF13817 IS66 C-terminal element M655_015355 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 M655_015355 PF13542 Helix-turn-helix domain of transposase family ISL3 M655_015355 PF01610 Transposase M655_015375 PF00872 Transposase, Mutator family M655_015395 PF01227 GTP cyclohydrolase I M655_015400 PF00216 Bacterial DNA-binding protein M655_015405 PF09547 Stage IV sporulation protein A (spore_IV_A) M655_015440 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus M655_015440 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus M655_015445 PF02660 Glycerol-3-phosphate acyltransferase M655_015450 PF01926 50S ribosome-binding GTPase M655_015450 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal M655_015460 PF14045 YIEGIA protein M655_015470 PF01070 FMN-dependent dehydrogenase M655_015475 PF00575 S1 RNA binding domain M655_015485 PF02224 Cytidylate kinase M655_015500 PF14620 YpeB sporulation M655_015500 PF03413 Peptidase propeptide and YPEB domain M655_015505 PF01471 Putative peptidoglycan binding domain M655_015505 PF07486 Cell Wall Hydrolase M655_015510 PF13367 PrsW family intramembrane metalloprotease M655_015515 PF17763 Glutaminase/Asparaginase C-terminal domain M655_015515 PF00710 Asparaginase, N-terminal M655_015520 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain M655_015520 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase M655_015525 PF02585 GlcNAc-PI de-N-acetylase M655_015530 PF05389 Negative regulator of genetic competence (MecA) M655_015545 PF01476 LysM domain M655_015555 PF00270 DEAD/DEAH box helicase M655_015555 PF00271 Helicase conserved C-terminal domain M655_015575 PF00266 Aminotransferase class-V M655_015580 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M655_015580 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M655_015580 PF01842 ACT domain M655_015585 PF03600 Citrate transporter M655_015595 PF13419 Haloacid dehalogenase-like hydrolase M655_015600 PF00512 His Kinase A (phospho-acceptor) domain M655_015600 PF18698 Histidine kinase sensor domain M655_015600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_015600 PF00989 PAS fold M655_015600 PF00672 HAMP domain M655_015605 PF00486 Transcriptional regulatory protein, C terminal M655_015605 PF00072 Response regulator receiver domain M655_015610 PF01578 Cytochrome C assembly protein M655_015615 PF05140 ResB-like family M655_015620 PF00578 AhpC/TSA family M655_015625 PF01479 S4 domain M655_015625 PF00849 RNA pseudouridylate synthase M655_015630 PF07670 Nucleoside recognition M655_015635 PF07670 Nucleoside recognition M655_015640 PF07943 Penicillin-binding protein 5, C-terminal domain M655_015640 PF00768 D-alanyl-D-alanine carboxypeptidase M655_015645 PF04079 Segregation and condensation complex subunit ScpB M655_015650 PF02616 Segregation and condensation protein ScpA M655_015655 PF02163 Peptidase family M50 M655_015660 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M655_015665 PF10442 FIST C domain M655_015665 PF00990 Diguanylate cyclase, GGDEF domain M655_015665 PF00563 EAL domain M655_015665 PF08495 FIST N domain M655_015670 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain M655_015670 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain M655_015675 PF03323 Bacillus/Clostridium GerA spore germination protein M655_015680 PF14097 Stage V sporulation protein AE1 M655_015685 PF03862 SpoVAC/SpoVAEB sporulation membrane protein M655_015690 PF07451 Stage V sporulation protein AD (SpoVAD) M655_015695 PF03862 SpoVAC/SpoVAEB sporulation membrane protein M655_015700 PF13782 Stage V sporulation protein AB M655_015705 PF12164 Stage V sporulation protein AA M655_015710 PF04539 Sigma-70 region 3 M655_015710 PF04542 Sigma-70 region 2 M655_015710 PF04545 Sigma-70, region 4 M655_015715 PF13581 Histidine kinase-like ATPase domain M655_015720 PF01740 STAS domain M655_015725 PF07943 Penicillin-binding protein 5, C-terminal domain M655_015725 PF00768 D-alanyl-D-alanine carboxypeptidase M655_015730 PF02743 Cache domain M655_015730 PF00672 HAMP domain M655_015730 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M655_015735 PF00005 ABC transporter M655_015735 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M655_015740 PF00005 ABC transporter M655_015740 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M655_015745 PF00528 Binding-protein-dependent transport system inner membrane component M655_015745 PF12911 N-terminal TM domain of oligopeptide transport permease C M655_015750 PF00528 Binding-protein-dependent transport system inner membrane component M655_015755 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M655_015765 PF02885 Glycosyl transferase family, helical bundle domain M655_015765 PF00591 Glycosyl transferase family, a/b domain M655_015765 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain M655_015770 PF01048 Phosphorylase superfamily M655_015775 PF01676 Metalloenzyme superfamily M655_015780 PF00589 Phage integrase family M655_015780 PF02899 Phage integrase, N-terminal SAM-like domain M655_015790 PF01262 Alanine dehydrogenase/PNT, C-terminal domain M655_015790 PF05222 Alanine dehydrogenase/PNT, N-terminal domain M655_015795 PF01475 Ferric uptake regulator family M655_015800 PF01944 Stage II sporulation protein M M655_015810 PF00293 NUDIX domain M655_015825 PF07687 Peptidase dimerisation domain M655_015825 PF01546 Peptidase family M20/M25/M40 M655_015840 PF02817 e3 binding domain M655_015840 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) M655_015840 PF00364 Biotin-requiring enzyme M655_015845 PF02780 Transketolase, C-terminal domain M655_015845 PF02779 Transketolase, pyrimidine binding domain M655_015850 PF00676 Dehydrogenase E1 component M655_015855 PF07992 Pyridine nucleotide-disulphide oxidoreductase M655_015855 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain M655_015860 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase M655_015860 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain M655_015865 PF02954 Bacterial regulatory protein, Fis family M655_015865 PF00989 PAS fold M655_015865 PF00158 Sigma-54 interaction domain M655_015880 PF00535 Glycosyl transferase family 2 M655_015910 PF08241 Methyltransferase domain M655_015915 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M655_015915 PF03466 LysR substrate binding domain M655_015920 PF00149 Calcineurin-like phosphoesterase M655_015920 PF10518 TAT (twin-arginine translocation) pathway signal sequence M655_015925 PF00484 Carbonic anhydrase M655_015930 PF01131 DNA topoisomerase M655_015930 PF08272 Topoisomerase I zinc-ribbon-like M655_015930 PF01396 Topoisomerase DNA binding C4 zinc finger M655_015930 PF01751 Toprim domain M655_015935 PF00753 Metallo-beta-lactamase superfamily M655_015935 PF16123 Hydroxyacylglutathione hydrolase C-terminus M655_015940 PF08769 Sporulation initiation factor Spo0A C terminal M655_015940 PF00072 Response regulator receiver domain M655_015945 PF17820 PDZ domain M655_015945 PF05580 SpoIVB peptidase S55 M655_015950 PF02463 RecF/RecN/SMC N terminal domain M655_015955 PF02863 Arginine repressor, C-terminal domain M655_015955 PF01316 Arginine repressor, DNA binding domain M655_015960 PF01513 ATP-NAD kinase M655_015965 PF01728 FtsJ-like methyltransferase M655_015965 PF01479 S4 domain M655_015970 PF13292 1-deoxy-D-xylulose-5-phosphate synthase M655_015970 PF02780 Transketolase, C-terminal domain M655_015970 PF02779 Transketolase, pyrimidine binding domain M655_015980 PF00348 Polyprenyl synthetase M655_015990 PF13742 OB-fold nucleic acid binding domain M655_015990 PF02601 Exonuclease VII, large subunit M655_015995 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain M655_015995 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain M655_016000 PF00814 Glycoprotease family M655_016005 PF01029 NusB family M655_016020 PF03780 Asp23 family, cell envelope-related function M655_016025 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain M655_016025 PF00289 Biotin carboxylase, N-terminal domain M655_016025 PF02785 Biotin carboxylase C-terminal domain M655_016030 PF00364 Biotin-requiring enzyme M655_016035 PF12685 SpoIIIAH-like protein M655_016045 PF09581 Stage III sporulation protein AF (Spore_III_AF) M655_016050 PF09546 Stage III sporulation protein AE (spore_III_AE) M655_016055 PF06686 Stage III sporulation protein AC/AD protein family M655_016065 PF09548 Stage III sporulation protein AB (spore_III_AB) M655_016080 PF10942 Protein of unknown function (DUF2619) M655_016085 PF02679 (2R)-phospho-3-sulfolactate synthase (ComA) M655_016090 PF04029 2-phosphosulpholactate phosphatase M655_016095 PF04284 Protein of unknown function (DUF441) M655_016100 PF09285 Elongation factor P, C-terminal M655_016100 PF08207 Elongation factor P (EF-P) KOW-like domain M655_016100 PF01132 Elongation factor P (EF-P) OB domain M655_016105 PF00557 Metallopeptidase family M24 M655_016105 PF01321 Creatinase/Prolidase N-terminal domain M655_016110 PF01220 Dehydroquinase class II M655_016120 PF07136 Protein of unknown function (DUF1385) M655_016130 PF01734 Patatin-like phospholipase M655_016135 PF02742 Iron dependent repressor, metal binding and dimerisation domain M655_016135 PF01325 Iron dependent repressor, N-terminal DNA binding domain M655_016140 PF03358 NADPH-dependent FMN reductase M655_016150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_016150 PF00989 PAS fold M655_016150 PF00512 His Kinase A (phospho-acceptor) domain M655_016150 PF13426 PAS domain M655_016150 PF13188 PAS domain M655_016155 PF02225 PA domain M655_016155 PF04389 Peptidase family M28 M655_016160 PF01063 Amino-transferase class IV M655_016165 PF03099 Biotin/lipoate A/B protein ligase family M655_016170 PF04101 Glycosyltransferase family 28 C-terminal domain M655_016170 PF03033 Glycosyltransferase family 28 N-terminal domain M655_016175 PF02347 Glycine cleavage system P-protein M655_016180 PF02347 Glycine cleavage system P-protein M655_016185 PF08669 Glycine cleavage T-protein C-terminal barrel domain M655_016185 PF01571 Aminomethyltransferase folate-binding domain M655_016190 PF00176 SNF2 family N-terminal domain M655_016190 PF00271 Helicase conserved C-terminal domain M655_016205 PF03698 Uncharacterised protein family (UPF0180) M655_016210 PF14038 YqzE-like protein M655_016215 PF01202 Shikimate kinase M655_016225 PF12728 Helix-turn-helix domain M655_016225 PF12727 PBP superfamily domain M655_016235 PF00528 Binding-protein-dependent transport system inner membrane component M655_016240 PF03459 TOBE domain M655_016240 PF00005 ABC transporter M655_016245 PF03746 LamB/YcsF family M655_016250 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) M655_016260 PF06133 Control of competence regulator ComK, YlbF/YmcA M655_016285 PF05067 Manganese containing catalase M655_016290 PF12652 CotJB protein M655_016295 PF11007 Spore coat associated protein JA (CotJA) M655_016300 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain M655_016300 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain M655_016305 PF01116 Fructose-bisphosphate aldolase class-II M655_016315 PF02782 FGGY family of carbohydrate kinases, C-terminal domain M655_016315 PF00370 FGGY family of carbohydrate kinases, N-terminal domain M655_016320 PF03611 PTS system sugar-specific permease component M655_016335 PF00072 Response regulator receiver domain M655_016335 PF04397 LytTr DNA-binding domain M655_016340 PF00565 Staphylococcal nuclease homologue M655_016355 PF13411 MerR HTH family regulatory protein M655_016360 PF00571 CBS domain M655_016365 PF08868 YugN-like family M655_016370 PF01098 Cell cycle protein M655_016380 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M655_016380 PF00205 Thiamine pyrophosphate enzyme, central domain M655_016380 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M655_016385 PF01471 Putative peptidoglycan binding domain M655_016385 PF07486 Cell Wall Hydrolase M655_016395 PF01699 Sodium/calcium exchanger protein M655_016400 PF00209 Sodium:neurotransmitter symporter family M655_016405 PF07408 Protein of unknown function (DUF1507) M655_016410 PF04960 Glutaminase M655_016415 PF00155 Aminotransferase class I and II M655_016420 PF03806 AbgT putative transporter family M655_016435 PF00202 Aminotransferase class-III M655_016440 PF00158 Sigma-54 interaction domain M655_016440 PF13426 PAS domain M655_016440 PF02954 Bacterial regulatory protein, Fis family M655_016445 PF00324 Amino acid permease M655_016450 PF07690 Major Facilitator Superfamily M655_016455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M655_016455 PF03466 LysR substrate binding domain M655_016460 PF01569 PAP2 superfamily M655_016465 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 M655_016475 PF00082 Subtilase family M655_016495 PF12706 Beta-lactamase superfamily domain M655_016505 PF00005 ABC transporter M655_016510 PF00528 Binding-protein-dependent transport system inner membrane component M655_016530 PF11084 Protein of unknown function (DUF2621) M655_016545 PF00581 Rhodanese-like domain M655_016550 PF05675 Protein of unknown function (DUF817) M655_016560 PF01497 Periplasmic binding protein M655_016560 PF12833 Helix-turn-helix domain M655_016565 PF08240 Alcohol dehydrogenase GroES-like domain M655_016565 PF00107 Zinc-binding dehydrogenase M655_016570 PF01022 Bacterial regulatory protein, arsR family M655_016585 PF03144 Elongation factor Tu domain 2 M655_016585 PF16658 Class II release factor RF3, C-terminal domain M655_016585 PF00009 Elongation factor Tu GTP binding domain M655_016590 PF02074 Carboxypeptidase Taq (M32) metallopeptidase M655_016605 PF02574 Homocysteine S-methyltransferase M655_016605 PF02219 Methylenetetrahydrofolate reductase M655_016610 PF02574 Homocysteine S-methyltransferase M655_016610 PF02310 B12 binding domain M655_016610 PF00809 Pterin binding enzyme M655_016610 PF02965 Vitamin B12 dependent methionine synthase, activation domain M655_016610 PF02607 B12 binding domain M655_016630 PF00750 tRNA synthetases class I (R) M655_016630 PF05746 DALR anticodon binding domain M655_016630 PF03485 Arginyl tRNA synthetase N terminal domain M655_016635 PF05139 Erythromycin esterase M655_016640 PF02803 Thiolase, C-terminal domain M655_016640 PF00108 Thiolase, N-terminal domain M655_016645 PF00005 ABC transporter M655_016650 PF00528 Binding-protein-dependent transport system inner membrane component M655_016655 PF00497 Bacterial extracellular solute-binding proteins, family 3 M655_016660 PF01144 Coenzyme A transferase M655_016665 PF01144 Coenzyme A transferase M655_016670 PF00158 Sigma-54 interaction domain M655_016680 PF01261 Xylose isomerase-like TIM barrel M655_016685 PF08361 MAATS-type transcriptional repressor, C-terminal region M655_016685 PF00440 Bacterial regulatory proteins, tetR family M655_016700 PF00072 Response regulator receiver domain M655_016705 PF01966 HD domain M655_016710 PF03454 MoeA C-terminal region (domain IV) M655_016710 PF00994 Probable molybdopterin binding domain M655_016710 PF03453 MoeA N-terminal region (domain I and II) M655_016715 PF06463 Molybdenum Cofactor Synthesis C M655_016715 PF04055 Radical SAM superfamily M655_016720 PF02634 FdhD/NarQ family M655_016725 PF10057 Uncharacterized conserved protein (DUF2294) M655_016735 PF07849 Protein of unknown function (DUF1641) M655_016740 PF01568 Molydopterin dinucleotide binding domain M655_016740 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region M655_016740 PF00037 4Fe-4S binding domain M655_016740 PF00384 Molybdopterin oxidoreductase M655_016740 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M655_016745 PF02322 Cytochrome bd terminal oxidase subunit II M655_016750 PF01654 Cytochrome bd terminal oxidase subunit I M655_016780 PF00474 Sodium:solute symporter family M655_016785 PF00474 Sodium:solute symporter family M655_016790 PF04341 Protein of unknown function, DUF485 M655_016795 PF04397 LytTr DNA-binding domain M655_016795 PF00072 Response regulator receiver domain M655_016800 PF06580 Histidine kinase M655_016800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_016800 PF07694 5TMR of 5TMR-LYT M655_016805 PF00733 Asparagine synthase M655_016805 PF13537 Glutamine amidotransferase domain M655_016815 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M655_016815 PF00384 Molybdopterin oxidoreductase M655_016815 PF01568 Molydopterin dinucleotide binding domain M655_016830 PF00132 Bacterial transferase hexapeptide (six repeats) M655_016845 PF08756 YfkB-like domain M655_016845 PF04055 Radical SAM superfamily M655_016855 PF07690 Major Facilitator Superfamily M655_016865 PF01476 LysM domain M655_016865 PF05257 CHAP domain M655_016890 PF05681 Fumarate hydratase (Fumerase) M655_016890 PF05683 Fumarase C-terminus M655_016905 PF05698 Bacterial trigger factor protein (TF) C-terminus M655_016915 PF00005 ABC transporter M655_016930 PF01546 Peptidase family M20/M25/M40 M655_016930 PF07687 Peptidase dimerisation domain M655_016940 PF03851 UV-endonuclease UvdE M655_016955 PF00221 Aromatic amino acid lyase M655_016960 PF04134 Protein of unknown function, DUF393 M655_016965 PF00248 Aldo/keto reductase family M655_016985 PF01329 Pterin 4 alpha carbinolamine dehydratase M655_016990 PF13649 Methyltransferase domain M655_016995 PF01712 Deoxynucleoside kinase M655_017000 PF01712 Deoxynucleoside kinase M655_017015 PF08281 Sigma-70, region 4 M655_017015 PF04542 Sigma-70 region 2 M655_017025 PF08543 Phosphomethylpyrimidine kinase M655_017030 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term M655_017030 PF07730 Histidine kinase M655_017030 PF00672 HAMP domain M655_017030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_017035 PF00072 Response regulator receiver domain M655_017035 PF00196 Bacterial regulatory proteins, luxR family M655_017055 PF03773 Predicted permease M655_017060 PF01022 Bacterial regulatory protein, arsR family M655_017070 PF16916 Dimerisation domain of Zinc Transporter M655_017070 PF01545 Cation efflux family M655_017075 PF00501 AMP-binding enzyme M655_017075 PF13193 AMP-binding enzyme C-terminal domain M655_017080 PF00149 Calcineurin-like phosphoesterase M655_017085 PF17853 GGDEF-like domain M655_017085 PF13556 PucR C-terminal helix-turn-helix domain M655_017085 PF05651 Putative sugar diacid recognition M655_017090 PF03459 TOBE domain M655_017090 PF17912 MalK OB fold domain M655_017090 PF00005 ABC transporter M655_017100 PF03458 UPF0126 domain M655_017105 PF00082 Subtilase family M655_017110 PF02525 Flavodoxin-like fold M655_017125 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M655_017130 PF00440 Bacterial regulatory proteins, tetR family M655_017130 PF17932 Tetracyclin repressor-like, C-terminal domain M655_017145 PF07833 Copper amine oxidase N-terminal domain M655_017150 PF07075 Protein of unknown function (DUF1343) M655_017155 PF00501 AMP-binding enzyme M655_017155 PF13193 AMP-binding enzyme C-terminal domain M655_017165 PF00171 Aldehyde dehydrogenase family M655_017170 PF07687 Peptidase dimerisation domain M655_017170 PF01546 Peptidase family M20/M25/M40 M655_017175 PF01144 Coenzyme A transferase M655_017180 PF01144 Coenzyme A transferase M655_017185 PF00202 Aminotransferase class-III M655_017195 PF00583 Acetyltransferase (GNAT) family M655_017205 PF03009 Glycerophosphoryl diester phosphodiesterase family M655_017210 PF04055 Radical SAM superfamily M655_017210 PF16199 Radical_SAM C-terminal domain M655_017280 PF03372 Endonuclease/Exonuclease/phosphatase family M655_017290 PF01471 Putative peptidoglycan binding domain M655_017290 PF17820 PDZ domain M655_017290 PF03572 Peptidase family S41 M655_017300 PF01784 NIF3 (NGG1p interacting factor 3) M655_017305 PF04816 tRNA (adenine(22)-N(1))-methyltransferase M655_017310 PF02771 Acyl-CoA dehydrogenase, N-terminal domain M655_017310 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M655_017310 PF02770 Acyl-CoA dehydrogenase, middle domain M655_017320 PF04539 Sigma-70 region 3 M655_017320 PF04545 Sigma-70, region 4 M655_017320 PF04542 Sigma-70 region 2 M655_017320 PF00140 Sigma-70 factor, region 1.2 M655_017320 PF03979 Sigma-70 factor, region 1.1 M655_017325 PF08275 DNA primase catalytic core, N-terminal domain M655_017325 PF01807 CHC2 zinc finger M655_017325 PF10410 DnaB-helicase binding domain of primase M655_017330 PF03618 Kinase/pyrophosphorylase M655_017335 PF00571 CBS domain M655_017335 PF08279 HTH domain M655_017340 PF02092 Glycyl-tRNA synthetase beta subunit M655_017340 PF05746 DALR anticodon binding domain M655_017345 PF02091 Glycyl-tRNA synthetase alpha subunit M655_017355 PF11967 Recombination protein O N terminal M655_017355 PF02565 Recombination protein O C terminal M655_017365 PF07650 KH domain M655_017365 PF01926 50S ribosome-binding GTPase M655_017370 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M655_017380 PF02130 Uncharacterized protein family UPF0054 M655_017385 PF02562 PhoH-like protein M655_017390 PF06898 Putative stage IV sporulation protein YqfD M655_017395 PF07873 YabP family M655_017415 PF12127 SigmaW regulon antibacterial M655_017420 PF01972 Serine dehydrogenase proteinase M655_017420 PF01957 NfeD-like C-terminal, partner-binding M655_017425 PF09424 Yqey-like protein M655_017430 PF01165 Ribosomal protein S21 M655_017435 PF01230 HIT domain M655_017440 PF02875 Mur ligase family, glutamate ligase domain M655_017440 PF08245 Mur ligase middle domain M655_017440 PF01225 Mur ligase family, catalytic domain M655_017445 PF07478 D-ala D-ala ligase C-terminus M655_017445 PF01820 D-ala D-ala ligase N-terminus M655_017455 PF10672 S-adenosylmethionine-dependent methyltransferase M655_017455 PF17785 PUA-like domain M655_017460 PF02690 Na+/Pi-cotransporter M655_017465 PF04172 LrgB-like family M655_017470 PF03788 LrgA family M655_017475 PF01791 DeoC/LacD family aldolase M655_017480 PF00293 NUDIX domain M655_017485 PF01938 TRAM domain M655_017485 PF04055 Radical SAM superfamily M655_017485 PF00919 Uncharacterized protein family UPF0004 M655_017490 PF04452 RNA methyltransferase M655_017500 PF00684 DnaJ central domain M655_017500 PF00226 DnaJ domain M655_017500 PF01556 DnaJ C terminal domain M655_017505 PF00012 Hsp70 protein M655_017510 PF01025 GrpE M655_017515 PF01628 HrcA protein C terminal domain M655_017515 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding M655_017520 PF04055 Radical SAM superfamily M655_017520 PF06969 HemN C-terminal domain M655_017525 PF00679 Elongation factor G C-terminus M655_017525 PF00009 Elongation factor Tu GTP binding domain M655_017525 PF06421 GTP-binding protein LepA C-terminus M655_017525 PF03144 Elongation factor Tu domain 2 M655_017530 PF01230 HIT domain M655_017535 PF00583 Acetyltransferase (GNAT) family M655_017545 PF08281 Sigma-70, region 4 M655_017545 PF04542 Sigma-70 region 2 M655_017550 PF13649 Methyltransferase domain M655_017555 PF00005 ABC transporter M655_017560 PF01032 FecCD transport family M655_017565 PF01497 Periplasmic binding protein M655_017570 PF01321 Creatinase/Prolidase N-terminal domain M655_017570 PF00557 Metallopeptidase family M24 M655_017575 PF00561 alpha/beta hydrolase fold M655_017590 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M655_017595 PF00005 ABC transporter M655_017595 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M655_017600 PF00005 ABC transporter M655_017600 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M655_017610 PF07454 Stage II sporulation protein P (SpoIIP) M655_017615 PF03418 Germination protease M655_017620 PF01649 Ribosomal protein S20 M655_017625 PF06144 DNA polymerase III, delta subunit M655_017640 PF00753 Metallo-beta-lactamase superfamily M655_017640 PF03772 Competence protein M655_017640 PF13567 Domain of unknown function (DUF4131) M655_017645 PF00733 Asparagine synthase M655_017645 PF13537 Glutamine amidotransferase domain M655_017650 PF10531 SLBB domain M655_017655 PF03807 NADP oxidoreductase coenzyme F420-dependent M655_017655 PF14748 Pyrroline-5-carboxylate reductase dimerisation M655_017660 PF08264 Anticodon-binding domain of tRNA M655_017660 PF09334 tRNA synthetases class I (M) M655_017660 PF13603 Leucyl-tRNA synthetase, Domain 2 M655_017660 PF00133 tRNA synthetases class I (I, L, M and V) M655_017665 PF13649 Methyltransferase domain M655_017675 PF01966 HD domain M655_017680 PF01467 Cytidylyltransferase-like M655_017685 PF01985 CRS1 / YhbY (CRM) domain M655_017690 PF01488 Shikimate / quinate 5-dehydrogenase M655_017690 PF08501 Shikimate dehydrogenase substrate binding domain M655_017690 PF18317 Shikimate 5'-dehydrogenase C-terminal domain M655_017695 PF01926 50S ribosome-binding GTPase M655_017705 PF00440 Bacterial regulatory proteins, tetR family M655_017725 PF11799 impB/mucB/samB family C-terminal domain M655_017725 PF00817 impB/mucB/samB family M655_017725 PF11798 IMS family HHH motif M655_017730 PF00578 AhpC/TSA family M655_017730 PF10417 C-terminal domain of 1-Cys peroxiredoxin M655_017735 PF07722 Peptidase C26 M655_017740 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M655_017750 PF01593 Flavin containing amine oxidoreductase M655_017760 PF08712 Scaffold protein Nfu/NifU N terminal M655_017760 PF13769 Virulence factor M655_017795 PF01476 LysM domain M655_017795 PF03734 L,D-transpeptidase catalytic domain M655_017805 PF16326 ABC transporter C-terminal domain M655_017805 PF12848 ABC transporter M655_017805 PF00005 ABC transporter M655_017810 PF02146 Sir2 family M655_017825 PF02600 Disulfide bond formation protein DsbB M655_017830 PF00085 Thioredoxin M655_017835 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) M655_017840 PF02630 SCO1/SenC M655_017860 PF02875 Mur ligase family, glutamate ligase domain M655_017860 PF08245 Mur ligase middle domain M655_017860 PF01225 Mur ligase family, catalytic domain M655_017865 PF09587 Bacterial capsule synthesis protein PGA_cap M655_017875 PF02559 CarD-like/TRCF domain M655_017915 PF04545 Sigma-70, region 4 M655_017915 PF04542 Sigma-70 region 2 M655_017920 PF00072 Response regulator receiver domain M655_017955 PF01966 HD domain M655_017960 PF00589 Phage integrase family M655_017960 PF02899 Phage integrase, N-terminal SAM-like domain M655_017990 PF01966 HD domain M655_018000 PF03717 Penicillin-binding Protein dimerisation domain M655_018000 PF00905 Penicillin binding protein transpeptidase domain M655_018005 PF00485 Phosphoribulokinase / Uridine kinase family M655_018010 PF01596 O-methyltransferase M655_018015 PF02618 YceG-like family M655_018025 PF00465 Iron-containing alcohol dehydrogenase M655_018030 PF00171 Aldehyde dehydrogenase family M655_018035 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M655_018035 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M655_018040 PF02954 Bacterial regulatory protein, Fis family M655_018040 PF13426 PAS domain M655_018040 PF00158 Sigma-54 interaction domain M655_018045 PF06949 Protein of unknown function (DUF1292) M655_018050 PF03652 Holliday junction resolvase M655_018055 PF06135 IreB regulatory phosphoprotein M655_018060 PF02272 DHHA1 domain M655_018060 PF01411 tRNA synthetases class II (A) M655_018060 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M655_018065 PF01594 AI-2E family transporter M655_018070 PF03741 Integral membrane protein TerC family M655_018090 PF13538 UvrD-like helicase C-terminal domain M655_018090 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain M655_018090 PF14490 Helix-hairpin-helix containing domain M655_018095 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M655_018095 PF00672 HAMP domain M655_018095 PF02743 Cache domain M655_018105 PF00266 Aminotransferase class-V M655_018110 PF02082 Transcriptional regulator M655_018115 PF16193 AAA C-terminal domain M655_018115 PF12002 MgsA AAA+ ATPase C terminal M655_018115 PF00004 ATPase family associated with various cellular activities (AAA) M655_018120 PF00899 ThiF family M655_018130 PF01336 OB-fold nucleic acid binding domain M655_018130 PF02938 GAD domain M655_018130 PF00152 tRNA synthetases class II (D, K and N) M655_018135 PF03129 Anticodon binding domain M655_018135 PF13393 Histidyl-tRNA synthetase M655_018140 PF04055 Radical SAM superfamily M655_018145 PF01520 N-acetylmuramoyl-L-alanine amidase M655_018155 PF02580 D-Tyr-tRNA(Tyr) deacylase M655_018160 PF04607 Region found in RelA / SpoT proteins M655_018160 PF02824 TGS domain M655_018160 PF13291 ACT domain M655_018165 PF00156 Phosphoribosyl transferase domain M655_018170 PF17768 RecJ OB domain M655_018170 PF01368 DHH family M655_018170 PF02272 DHHA1 domain M655_018170 PF10141 Single-strand DNA-specific exonuclease, C terminal domain M655_018175 PF01545 Cation efflux family M655_018175 PF16916 Dimerisation domain of Zinc Transporter M655_018180 PF07549 SecD/SecF GG Motif M655_018180 PF02355 Protein export membrane protein M655_018185 PF07549 SecD/SecF GG Motif M655_018185 PF02355 Protein export membrane protein M655_018195 PF01943 Polysaccharide biosynthesis protein M655_018195 PF14667 Polysaccharide biosynthesis C-terminal domain M655_018200 PF04239 Protein of unknown function (DUF421) M655_018205 PF01544 CorA-like Mg2+ transporter protein M655_018215 PF02699 Preprotein translocase subunit M655_018220 PF01702 Queuine tRNA-ribosyltransferase M655_018225 PF02547 Queuosine biosynthesis protein M655_018230 PF04122 Putative cell wall binding repeat 2 M655_018230 PF08486 Stage II sporulation protein M655_018235 PF11146 Protein of unknown function (DUF2905) M655_018240 PF17864 RuvB AAA lid domain M655_018240 PF05491 RuvB C-terminal winged helix domain M655_018240 PF05496 Holliday junction DNA helicase RuvB P-loop domain M655_018245 PF01330 RuvA N terminal domain M655_018245 PF07499 RuvA, C-terminal domain M655_018250 PF02075 Crossover junction endodeoxyribonuclease RuvC M655_018270 PF02872 5'-nucleotidase, C-terminal domain M655_018270 PF00149 Calcineurin-like phosphoesterase M655_018280 PF01476 LysM domain M655_018285 PF00800 Prephenate dehydratase M655_018285 PF01842 ACT domain M655_018290 PF00288 GHMP kinases N terminal domain M655_018290 PF08544 GHMP kinases C terminal M655_018295 PF00291 Pyridoxal-phosphate dependent enzyme M655_018300 PF03447 Homoserine dehydrogenase, NAD binding domain M655_018300 PF01842 ACT domain M655_018300 PF00742 Homoserine dehydrogenase M655_018305 PF01842 ACT domain M655_018310 PF07992 Pyridine nucleotide-disulphide oxidoreductase M655_018315 PF07849 Protein of unknown function (DUF1641) M655_018325 PF01926 50S ribosome-binding GTPase M655_018325 PF01018 GTP1/OBG M655_018325 PF09269 Domain of unknown function (DUF1967) M655_018335 PF01016 Ribosomal L27 protein M655_018345 PF00829 Ribosomal prokaryotic L21 protein M655_018350 PF10150 Ribonuclease E/G family M655_018350 PF00575 S1 RNA binding domain M655_018355 PF02163 Peptidase family M50 M655_018365 PF00313 'Cold-shock' DNA-binding domain M655_018370 PF01098 Cell cycle protein M655_018375 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain M655_018380 PF03775 Septum formation inhibitor MinC, C-terminal domain M655_018390 PF04093 rod shape-determining protein MreD M655_018395 PF04085 rod shape-determining protein MreC M655_018405 PF04002 RadC-like JAB domain M655_018410 PF02545 Maf-like protein M655_018425 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III M655_018425 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal M655_018430 PF08245 Mur ligase middle domain M655_018430 PF02875 Mur ligase family, glutamate ligase domain M655_018430 PF01225 Mur ligase family, catalytic domain M655_018435 PF02875 Mur ligase family, glutamate ligase domain M655_018435 PF08245 Mur ligase middle domain M655_018440 PF00133 tRNA synthetases class I (I, L, M and V) M655_018440 PF08264 Anticodon-binding domain of tRNA M655_018440 PF10458 Valyl tRNA synthetase tRNA binding arm M655_018475 PF01476 LysM domain M655_018490 PF01208 Uroporphyrinogen decarboxylase (URO-D) M655_018505 PF03551 Transcriptional regulator PadR-like family M655_018510 PF00149 Calcineurin-like phosphoesterase M655_018510 PF02872 5'-nucleotidase, C-terminal domain M655_018515 PF00561 alpha/beta hydrolase fold M655_018530 PF00202 Aminotransferase class-III M655_018535 PF00490 Delta-aminolevulinic acid dehydratase M655_018545 PF03900 Porphobilinogen deaminase, C-terminal domain M655_018545 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain M655_018550 PF01578 Cytochrome C assembly protein M655_018555 PF01488 Shikimate / quinate 5-dehydrogenase M655_018555 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain M655_018555 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain M655_018565 PF02838 Glycosyl hydrolase family 20, domain 2 M655_018565 PF00963 Cohesin domain M655_018565 PF07555 beta-N-acetylglucosaminidase M655_018565 PF00754 F5/8 type C domain M655_018565 PF00041 Fibronectin type III domain M655_018570 PF01926 50S ribosome-binding GTPase M655_018575 PF00004 ATPase family associated with various cellular activities (AAA) M655_018575 PF05362 Lon protease (S16) C-terminal proteolytic domain M655_018575 PF02190 ATP-dependent protease La (LON) substrate-binding domain M655_018580 PF00004 ATPase family associated with various cellular activities (AAA) M655_018580 PF05362 Lon protease (S16) C-terminal proteolytic domain M655_018585 PF06689 ClpX C4-type zinc finger M655_018585 PF10431 C-terminal, D2-small domain, of ClpB protein M655_018585 PF07724 AAA domain (Cdc48 subfamily) M655_018590 PF00574 Clp protease M655_018595 PF05698 Bacterial trigger factor protein (TF) C-terminus M655_018595 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase M655_018595 PF05697 Bacterial trigger factor protein (TF) M655_018600 PF12850 Calcineurin-like phosphoesterase superfamily domain M655_018605 PF01725 Ham1 family M655_018610 PF03725 3' exoribonuclease family, domain 2 M655_018610 PF01138 3' exoribonuclease family, domain 1 M655_018620 PF01177 Asp/Glu/Hydantoin racemase M655_018625 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M655_018625 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M655_018630 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD M655_018650 PF03527 RHS protein M655_018670 PF01695 IstB-like ATP binding protein M655_018690 PF01609 Transposase DDE domain M655_018700 PF13333 Integrase core domain M655_018700 PF13276 HTH-like domain M655_018700 PF00665 Integrase core domain M655_018715 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) M655_018725 PF03527 RHS protein M655_018735 PF05922 Peptidase inhibitor I9 M655_018735 PF00082 Subtilase family M655_018740 PF02567 Phenazine biosynthesis-like protein M655_018745 PF03466 LysR substrate binding domain M655_018745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M655_018755 PF04542 Sigma-70 region 2 M655_018755 PF04545 Sigma-70, region 4 M655_018770 PF00005 ABC transporter M655_018770 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M655_018775 PF00005 ABC transporter M655_018775 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M655_018780 PF12911 N-terminal TM domain of oligopeptide transport permease C M655_018780 PF00528 Binding-protein-dependent transport system inner membrane component M655_018785 PF00528 Binding-protein-dependent transport system inner membrane component M655_018790 PF01546 Peptidase family M20/M25/M40 M655_018795 PF00158 Sigma-54 interaction domain M655_018795 PF00989 PAS fold M655_018795 PF02954 Bacterial regulatory protein, Fis family M655_018800 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M655_018810 PF16363 GDP-mannose 4,6 dehydratase M655_018815 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M655_018815 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M655_018815 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M655_018815 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M655_018825 PF16363 GDP-mannose 4,6 dehydratase M655_018830 PF00535 Glycosyl transferase family 2 M655_018830 PF01501 Glycosyl transferase family 8 M655_018835 PF01370 NAD dependent epimerase/dehydratase family M655_018840 PF13439 Glycosyltransferase Family 4 M655_018840 PF00534 Glycosyl transferases group 1 M655_018845 PF05050 Methyltransferase FkbM domain M655_018850 PF01370 NAD dependent epimerase/dehydratase family M655_018855 PF00483 Nucleotidyl transferase M655_018860 PF16363 GDP-mannose 4,6 dehydratase M655_018865 PF00483 Nucleotidyl transferase M655_018865 PF01050 Mannose-6-phosphate isomerase M655_018880 PF00535 Glycosyl transferase family 2 M655_018885 PF07098 Protein of unknown function (DUF1360) M655_018890 PF00188 Cysteine-rich secretory protein family M655_018900 PF00535 Glycosyl transferase family 2 M655_018925 PF07992 Pyridine nucleotide-disulphide oxidoreductase M655_018930 PF00766 Electron transfer flavoprotein FAD-binding domain M655_018930 PF01012 Electron transfer flavoprotein domain M655_018935 PF01012 Electron transfer flavoprotein domain M655_018940 PF00557 Metallopeptidase family M24 M655_018940 PF01321 Creatinase/Prolidase N-terminal domain M655_018945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M655_018945 PF03466 LysR substrate binding domain M655_018955 PF08757 CotH kinase protein M655_018960 PF05547 Immune inhibitor A peptidase M6 M655_018965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_018965 PF00989 PAS fold M655_018965 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain M655_018965 PF17203 Single cache domain 3 M655_018970 PF01546 Peptidase family M20/M25/M40 M655_018970 PF07687 Peptidase dimerisation domain M655_018975 PF01494 FAD binding domain M655_018980 PF00291 Pyridoxal-phosphate dependent enzyme M655_018995 PF00480 ROK family M655_019005 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M655_019005 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M655_019010 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M655_019010 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M655_019015 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M655_019015 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M655_019020 PF00528 Binding-protein-dependent transport system inner membrane component M655_019025 PF00528 Binding-protein-dependent transport system inner membrane component M655_019035 PF00480 ROK family M655_019035 PF01047 MarR family M655_019055 PF00196 Bacterial regulatory proteins, luxR family M655_019060 PF00528 Binding-protein-dependent transport system inner membrane component M655_019060 PF12911 N-terminal TM domain of oligopeptide transport permease C M655_019080 PF06280 Fn3-like domain M655_019080 PF00082 Subtilase family M655_019080 PF00746 LPXTG cell wall anchor motif M655_019080 PF02225 PA domain M655_019085 PF01047 MarR family M655_019090 PF13183 4Fe-4S dicluster domain M655_019090 PF13085 2Fe-2S iron-sulfur cluster binding domain M655_019095 PF00890 FAD binding domain M655_019095 PF02910 Fumarate reductase flavoprotein C-term M655_019100 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit M655_019105 PF10702 Protein of unknown function (DUF2507) M655_019110 PF13840 ACT domain M655_019110 PF00696 Amino acid kinase family M655_019115 PF01541 GIY-YIG catalytic domain M655_019115 PF02151 UvrB/uvrC motif M655_019115 PF08459 UvrC Helix-hairpin-helix N-terminal M655_019125 PF00005 ABC transporter M655_019130 PF12399 Branched-chain amino acid ATP-binding cassette transporter M655_019130 PF00005 ABC transporter M655_019135 PF02653 Branched-chain amino acid transport system / permease component M655_019135 PF11862 Domain of unknown function (DUF3382) M655_019140 PF02653 Branched-chain amino acid transport system / permease component M655_019145 PF13458 Periplasmic binding protein M655_019150 PF00085 Thioredoxin M655_019160 PF01012 Electron transfer flavoprotein domain M655_019160 PF00766 Electron transfer flavoprotein FAD-binding domain M655_019165 PF01012 Electron transfer flavoprotein domain M655_019170 PF00378 Enoyl-CoA hydratase/isomerase M655_019175 PF08359 YsiA-like protein, C-terminal region M655_019175 PF00440 Bacterial regulatory proteins, tetR family M655_019180 PF13193 AMP-binding enzyme C-terminal domain M655_019180 PF00501 AMP-binding enzyme M655_019185 PF03816 Cell envelope-related transcriptional attenuator domain M655_019190 PF00108 Thiolase, N-terminal domain M655_019190 PF02803 Thiolase, C-terminal domain M655_019210 PF14667 Polysaccharide biosynthesis C-terminal domain M655_019210 PF01943 Polysaccharide biosynthesis protein M655_019220 PF03023 Lipid II flippase MurJ M655_019250 PF13439 Glycosyltransferase Family 4 M655_019250 PF00534 Glycosyl transferases group 1 M655_019255 PF04951 D-aminopeptidase M655_019260 PF00313 'Cold-shock' DNA-binding domain M655_019265 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M655_019265 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M655_019265 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M655_019275 PF03994 Domain of Unknown Function (DUF350) M655_019280 PF00488 MutS domain V M655_019280 PF01713 Smr domain M655_019290 PF00731 AIR carboxylase M655_019295 PF02540 NAD synthase M655_019300 PF05164 Cell division protein ZapA M655_019305 PF01588 Putative tRNA binding domain M655_019305 PF03147 Ferredoxin-fold anticodon binding domain M655_019305 PF03483 B3/4 domain M655_019305 PF03484 tRNA synthetase B5 domain M655_019305 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain M655_019310 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain M655_019310 PF01409 tRNA synthetases class II core domain (F) M655_019320 PF00107 Zinc-binding dehydrogenase M655_019320 PF08240 Alcohol dehydrogenase GroES-like domain M655_019325 PF03358 NADPH-dependent FMN reductase M655_019330 PF03466 LysR substrate binding domain M655_019330 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M655_019335 PF08032 RNA 2'-O ribose methyltransferase substrate binding M655_019335 PF00588 SpoU rRNA Methylase family M655_019340 PF02254 TrkA-N domain M655_019340 PF02080 TrkA-C domain M655_019345 PF14098 Small, acid-soluble spore protein I M655_019350 PF03845 Spore germination protein M655_019355 PF05504 Spore germination B3/ GerAC like, C-terminal M655_019360 PF03845 Spore germination protein M655_019365 PF03323 Bacillus/Clostridium GerA spore germination protein M655_019380 PF00266 Aminotransferase class-V M655_019385 PF01361 Tautomerase enzyme M655_019415 PF01614 Bacterial transcriptional regulator M655_019415 PF09339 IclR helix-turn-helix domain M655_019420 PF06961 Protein of unknown function (DUF1294) M655_019425 PF09335 SNARE associated Golgi protein M655_019440 PF00994 Probable molybdopterin binding domain M655_019445 PF00155 Aminotransferase class I and II M655_019445 PF00392 Bacterial regulatory proteins, gntR family M655_019450 PF00180 Isocitrate/isopropylmalate dehydrogenase M655_019455 PF00682 HMGL-like M655_019455 PF08502 LeuA allosteric (dimerisation) domain M655_019460 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain M655_019460 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain M655_019465 PF01842 ACT domain M655_019465 PF10369 Small subunit of acetolactate synthase M655_019470 PF00205 Thiamine pyrophosphate enzyme, central domain M655_019470 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain M655_019470 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain M655_019475 PF14306 PUA-like domain M655_019475 PF01747 ATP-sulfurylase M655_019480 PF01507 Phosphoadenosine phosphosulfate reductase family M655_019490 PF00453 Ribosomal protein L20 M655_019495 PF01632 Ribosomal protein L35 M655_019500 PF00707 Translation initiation factor IF-3, C-terminal domain M655_019500 PF05198 Translation initiation factor IF-3, N-terminal domain M655_019505 PF04055 Radical SAM superfamily M655_019505 PF06463 Molybdenum Cofactor Synthesis C M655_019510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M655_019515 PF03129 Anticodon binding domain M655_019515 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M655_019515 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain M655_019515 PF02824 TGS domain M655_019525 PF04055 Radical SAM superfamily M655_019540 PF00441 Acyl-CoA dehydrogenase, C-terminal domain M655_019540 PF02770 Acyl-CoA dehydrogenase, middle domain M655_019540 PF18158 Adaptive response protein AidB N-terminal domain M655_019545 PF13193 AMP-binding enzyme C-terminal domain M655_019545 PF00501 AMP-binding enzyme M655_019550 PF09278 MerR, DNA binding M655_019550 PF00376 MerR family regulatory protein M655_019555 PF07486 Cell Wall Hydrolase M655_019560 PF09671 Spore coat protein (Spore_GerQ) M655_019590 PF07690 Major Facilitator Superfamily M655_019595 PF00293 NUDIX domain M655_019610 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M655_019615 PF11553 Protein of unknown function (DUF3231) M655_019630 PF01810 LysE type translocator M655_019635 PF04299 Putative FMN-binding domain M655_019645 PF01063 Amino-transferase class IV M655_019650 PF00155 Aminotransferase class I and II M655_019655 PF00155 Aminotransferase class I and II M655_019660 PF00155 Aminotransferase class I and II M655_019660 PF00392 Bacterial regulatory proteins, gntR family M655_019690 PF00144 Beta-lactamase M655_019695 PF03576 Peptidase family S58 M655_019700 PF01244 Membrane dipeptidase (Peptidase family M19) M655_019705 PF03466 LysR substrate binding domain M655_019705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M655_019710 PF07690 Major Facilitator Superfamily M655_019725 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M655_019725 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M655_019730 PF08327 Activator of Hsp90 ATPase homolog 1-like protein M655_019735 PF01022 Bacterial regulatory protein, arsR family M655_019740 PF06908 YspA SLOG family M655_019745 PF07690 Major Facilitator Superfamily M655_019765 PF00583 Acetyltransferase (GNAT) family M655_019770 PF08240 Alcohol dehydrogenase GroES-like domain M655_019770 PF00107 Zinc-binding dehydrogenase M655_019790 PF00375 Sodium:dicarboxylate symporter family M655_019795 PF01594 AI-2E family transporter M655_019800 PF00266 Aminotransferase class-V M655_019805 PF00083 Sugar (and other) transporter M655_019810 PF16868 NMT1-like family M655_019815 PF02954 Bacterial regulatory protein, Fis family M655_019815 PF00072 Response regulator receiver domain M655_019815 PF00158 Sigma-54 interaction domain M655_019820 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_019820 PF00989 PAS fold M655_019820 PF00512 His Kinase A (phospho-acceptor) domain M655_019850 PF00356 Bacterial regulatory proteins, lacI family M655_019865 PF01741 Large-conductance mechanosensitive channel, MscL M655_019870 PF01156 Inosine-uridine preferring nucleoside hydrolase M655_019875 PF01156 Inosine-uridine preferring nucleoside hydrolase M655_019890 PF00005 ABC transporter M655_019890 PF12704 MacB-like periplasmic core domain M655_019890 PF02687 FtsX-like permease family M655_019895 PF00005 ABC transporter M655_019900 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M655_019905 PF00672 HAMP domain M655_019905 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_019905 PF00512 His Kinase A (phospho-acceptor) domain M655_019905 PF00989 PAS fold M655_019905 PF18698 Histidine kinase sensor domain M655_019910 PF00072 Response regulator receiver domain M655_019910 PF00486 Transcriptional regulatory protein, C terminal M655_019915 PF00881 Nitroreductase family M655_019920 PF04408 Helicase associated domain (HA2) M655_019920 PF00270 DEAD/DEAH box helicase M655_019920 PF08482 ATP-dependent helicase C-terminal M655_019920 PF00271 Helicase conserved C-terminal domain M655_019935 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M655_019940 PF01145 SPFH domain / Band 7 family M655_019960 PF07690 Major Facilitator Superfamily M655_019965 PF03466 LysR substrate binding domain M655_019965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M655_019975 PF00005 ABC transporter M655_019975 PF00664 ABC transporter transmembrane region M655_019980 PF00005 ABC transporter M655_019980 PF00664 ABC transporter transmembrane region M655_019990 PF09339 IclR helix-turn-helix domain M655_019990 PF01614 Bacterial transcriptional regulator M655_020000 PF01327 Polypeptide deformylase M655_020015 PF00551 Formyl transferase M655_020015 PF01842 ACT domain M655_020025 PF01709 Transcriptional regulator M655_020040 PF01297 Zinc-uptake complex component A periplasmic M655_020045 PF00950 ABC 3 transport family M655_020050 PF00005 ABC transporter M655_020055 PF00171 Aldehyde dehydrogenase family M655_020065 PF00465 Iron-containing alcohol dehydrogenase M655_020070 PF00324 Amino acid permease M655_020075 PF00158 Sigma-54 interaction domain M655_020085 PF01627 Hpt domain M655_020085 PF00512 His Kinase A (phospho-acceptor) domain M655_020085 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) M655_020085 PF00672 HAMP domain M655_020085 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_020085 PF00072 Response regulator receiver domain M655_020090 PF00486 Transcriptional regulatory protein, C terminal M655_020090 PF00072 Response regulator receiver domain M655_020095 PF00990 Diguanylate cyclase, GGDEF domain M655_020095 PF03707 Bacterial signalling protein N terminal repeat M655_020095 PF00563 EAL domain M655_020095 PF13188 PAS domain M655_020110 PF01609 Transposase DDE domain M655_020120 PF00183 Hsp90 protein M655_020125 PF13411 MerR HTH family regulatory protein M655_020125 PF07739 TipAS antibiotic-recognition domain M655_020130 PF08502 LeuA allosteric (dimerisation) domain M655_020130 PF00682 HMGL-like M655_020145 PF01047 MarR family M655_020150 PF04199 Putative cyclase M655_020160 PF00561 alpha/beta hydrolase fold M655_020170 PF00664 ABC transporter transmembrane region M655_020170 PF00005 ABC transporter M655_020175 PF00005 ABC transporter M655_020175 PF00664 ABC transporter transmembrane region M655_020175 PF08021 Siderophore-interacting FAD-binding domain M655_020175 PF04954 Siderophore-interacting protein M655_020180 PF00005 ABC transporter M655_020195 PF12833 Helix-turn-helix domain M655_020195 PF12852 Cupin M655_020235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M655_020235 PF03466 LysR substrate binding domain M655_020245 PF01032 FecCD transport family M655_020250 PF01032 FecCD transport family M655_020255 PF01497 Periplasmic binding protein M655_020260 PF07690 Major Facilitator Superfamily M655_020270 PF01497 Periplasmic binding protein M655_020270 PF12833 Helix-turn-helix domain M655_020315 PF13193 AMP-binding enzyme C-terminal domain M655_020315 PF00501 AMP-binding enzyme M655_020320 PF00106 short chain dehydrogenase M655_020345 PF01497 Periplasmic binding protein M655_020350 PF08240 Alcohol dehydrogenase GroES-like domain M655_020350 PF00107 Zinc-binding dehydrogenase M655_020360 PF00579 tRNA synthetases class I (W and Y) M655_020360 PF01479 S4 domain M655_020375 PF00296 Luciferase-like monooxygenase M655_020380 PF12833 Helix-turn-helix domain M655_020380 PF02311 AraC-like ligand binding domain M655_020390 PF01061 ABC-2 type transporter M655_020395 PF00005 ABC transporter M655_020395 PF13732 Domain of unknown function (DUF4162) M655_020425 PF04002 RadC-like JAB domain M655_020430 PF01381 Helix-turn-helix M655_020435 PF01609 Transposase DDE domain M655_020450 PF00872 Transposase, Mutator family M655_020465 PF12728 Helix-turn-helix domain M655_020470 PF00589 Phage integrase family M655_020470 PF14659 Phage integrase, N-terminal SAM-like domain M655_020490 PF11999 Protein of unknown function (DUF3494) M655_020490 PF02368 Bacterial Ig-like domain (group 2) M655_020500 PF01695 IstB-like ATP binding protein M655_020500 PF07319 Primosomal protein DnaI N-terminus M655_020510 PF03477 ATP cone domain M655_020515 PF11871 Domain of unknown function (DUF3391) M655_020515 PF01966 HD domain M655_020520 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain M655_020520 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain M655_020525 PF01464 Transglycosylase SLT domain M655_020525 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain M655_020530 PF01121 Dephospho-CoA kinase M655_020535 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain M655_020535 PF06827 Zinc finger found in FPG and IleRS M655_020535 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain M655_020540 PF00476 DNA polymerase family A M655_020540 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M655_020540 PF01367 5'-3' exonuclease, C-terminal SAM fold M655_020545 PF04748 Divergent polysaccharide deacetylase M655_020550 PF01520 N-acetylmuramoyl-L-alanine amidase M655_020560 PF01609 Transposase DDE domain M655_020565 PF07690 Major Facilitator Superfamily M655_020570 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M655_020580 PF01047 MarR family M655_020585 PF04294 VanW like protein M655_020595 PF01895 PhoU domain M655_020600 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_020600 PF00512 His Kinase A (phospho-acceptor) domain M655_020600 PF16736 Single Cache-like M655_020600 PF00989 PAS fold M655_020605 PF00486 Transcriptional regulatory protein, C terminal M655_020605 PF00072 Response regulator receiver domain M655_020625 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain M655_020625 PF00056 lactate/malate dehydrogenase, NAD binding domain M655_020630 PF00180 Isocitrate/isopropylmalate dehydrogenase M655_020635 PF00285 Citrate synthase, C-terminal domain M655_020640 PF01594 AI-2E family transporter M655_020645 PF04186 FxsA cytoplasmic membrane protein M655_020650 PF03061 Thioesterase superfamily M655_020665 PF17975 Ribonucleotide reductase alpha domain M655_020665 PF02867 Ribonucleotide reductase, barrel domain M655_020685 PF01610 Transposase M655_020685 PF13542 Helix-turn-helix domain of transposase family ISL3 M655_020685 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 M655_020715 PF00391 PEP-utilising enzyme, mobile domain M655_020715 PF00224 Pyruvate kinase, barrel domain M655_020715 PF02887 Pyruvate kinase, alpha/beta domain M655_020720 PF00365 Phosphofructokinase M655_020725 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit M655_020730 PF01039 Carboxyl transferase domain M655_020730 PF17848 Acetyl-coA carboxylase zinc finger domain M655_020740 PF07729 FCD domain M655_020740 PF00392 Bacterial regulatory proteins, gntR family M655_020745 PF00390 Malic enzyme, N-terminal domain M655_020745 PF03949 Malic enzyme, NAD binding domain M655_020750 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M655_020750 PF07733 Bacterial DNA polymerase III alpha NTPase domain M655_020750 PF02811 PHP domain M655_020750 PF01336 OB-fold nucleic acid binding domain M655_020750 PF14579 Helix-hairpin-helix motif M655_020765 PF01022 Bacterial regulatory protein, arsR family M655_020770 PF00571 CBS domain M655_020770 PF03061 Thioesterase superfamily M655_020770 PF00392 Bacterial regulatory proteins, gntR family M655_020770 PF07085 DRTGG domain M655_020775 PF04286 Protein of unknown function (DUF445) M655_020785 PF14398 YheC/D like ATP-grasp M655_020790 PF14398 YheC/D like ATP-grasp M655_020825 PF00483 Nucleotidyl transferase M655_020825 PF00132 Bacterial transferase hexapeptide (six repeats) M655_020835 PF01380 SIS domain M655_020840 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain M655_020840 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain M655_020840 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain M655_020845 PF00486 Transcriptional regulatory protein, C terminal M655_020845 PF00072 Response regulator receiver domain M655_020850 PF00535 Glycosyl transferase family 2 M655_020865 PF00578 AhpC/TSA family M655_020865 PF10417 C-terminal domain of 1-Cys peroxiredoxin M655_020875 PF07992 Pyridine nucleotide-disulphide oxidoreductase M655_020885 PF07694 5TMR of 5TMR-LYT M655_020885 PF00990 Diguanylate cyclase, GGDEF domain M655_020895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_020895 PF00512 His Kinase A (phospho-acceptor) domain M655_020895 PF00989 PAS fold M655_020895 PF08447 PAS fold M655_020900 PF13580 SIS domain M655_020905 PF01869 BadF/BadG/BcrA/BcrD ATPase family M655_020910 PF00528 Binding-protein-dependent transport system inner membrane component M655_020915 PF00528 Binding-protein-dependent transport system inner membrane component M655_020920 PF01547 Bacterial extracellular solute-binding protein M655_020925 PF00144 Beta-lactamase M655_020930 PF01380 SIS domain M655_020930 PF01418 Helix-turn-helix domain, rpiR family M655_020935 PF01979 Amidohydrolase family M655_020965 PF05922 Peptidase inhibitor I9 M655_020965 PF00082 Subtilase family M655_020990 PF01032 FecCD transport family M655_020995 PF00005 ABC transporter M655_021000 PF01243 Pyridoxamine 5'-phosphate oxidase M655_021000 PF10615 Protein of unknown function (DUF2470) M655_021010 PF07687 Peptidase dimerisation domain M655_021010 PF01546 Peptidase family M20/M25/M40 M655_021015 PF01546 Peptidase family M20/M25/M40 M655_021015 PF07687 Peptidase dimerisation domain M655_021030 PF00440 Bacterial regulatory proteins, tetR family M655_021035 PF00579 tRNA synthetases class I (W and Y) M655_021055 PF02592 Putative vitamin uptake transporter M655_021070 PF00005 ABC transporter M655_021085 PF02653 Branched-chain amino acid transport system / permease component M655_021090 PF00501 AMP-binding enzyme M655_021090 PF13193 AMP-binding enzyme C-terminal domain M655_021095 PF12399 Branched-chain amino acid ATP-binding cassette transporter M655_021095 PF00005 ABC transporter M655_021105 PF00860 Permease family M655_021110 PF03466 LysR substrate binding domain M655_021110 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M655_021115 PF04463 Protein of unknown function (DUF523) M655_021120 PF00485 Phosphoribulokinase / Uridine kinase family M655_021130 PF08281 Sigma-70, region 4 M655_021130 PF04542 Sigma-70 region 2 M655_021135 PF00210 Ferritin-like domain M655_021140 PF07687 Peptidase dimerisation domain M655_021140 PF01546 Peptidase family M20/M25/M40 M655_021145 PF17676 LD-carboxypeptidase C-terminal domain M655_021145 PF02016 LD-carboxypeptidase N-terminal domain M655_021150 PF00158 Sigma-54 interaction domain M655_021155 PF08279 HTH domain M655_021155 PF00072 Response regulator receiver domain M655_021160 PF17203 Single cache domain 3 M655_021160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_021160 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain M655_021165 PF03480 Bacterial extracellular solute-binding protein, family 7 M655_021170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_021170 PF00989 PAS fold M655_021170 PF00512 His Kinase A (phospho-acceptor) domain M655_021170 PF16736 Single Cache-like M655_021175 PF00072 Response regulator receiver domain M655_021175 PF00486 Transcriptional regulatory protein, C terminal M655_021185 PF00375 Sodium:dicarboxylate symporter family M655_021195 PF02080 TrkA-C domain M655_021200 PF00999 Sodium/hydrogen exchanger family M655_021205 PF00578 AhpC/TSA family M655_021220 PF14824 Sirohaem biosynthesis protein central M655_021220 PF10414 Sirohaem synthase dimerisation region M655_021220 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M655_021225 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M655_021230 PF02277 Phosphoribosyltransferase M655_021235 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain M655_021235 PF07685 CobB/CobQ-like glutamine amidotransferase domain M655_021240 PF07685 CobB/CobQ-like glutamine amidotransferase domain M655_021240 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain M655_021245 PF01890 Cobalamin synthesis G C-terminus M655_021245 PF11761 Cobalamin biosynthesis central region M655_021245 PF11760 Cobalamin synthesis G N-terminal M655_021250 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M655_021255 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M655_021260 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M655_021265 PF01888 CbiD M655_021270 PF02570 Precorrin-8X methylmutase M655_021275 PF02571 Precorrin-6x reductase CbiJ/CobK M655_021280 PF01903 CbiX M655_021285 PF01077 Nitrite and sulphite reductase 4Fe-4S domain M655_021285 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases M655_021290 PF03186 CobD/Cbib protein M655_021295 PF00300 Histidine phosphatase superfamily (branch 1) M655_021300 PF02654 Cobalamin-5-phosphate synthase M655_021305 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase M655_021310 PF00155 Aminotransferase class I and II M655_021315 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP M655_021315 PF12557 Cob(I)alamin adenosyltransferase N terminal M655_021320 PF01047 MarR family M655_021340 PF01645 Conserved region in glutamate synthase M655_021345 PF00578 AhpC/TSA family M655_021345 PF10417 C-terminal domain of 1-Cys peroxiredoxin M655_021365 PF13332 Hemagglutinin repeat M655_021365 PF04829 Pre-toxin domain with VENN motif M655_021365 PF05860 haemagglutination activity domain M655_021405 PF00005 ABC transporter M655_021410 PF08664 YcbB domain M655_021410 PF00072 Response regulator receiver domain M655_021415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_021420 PF00528 Binding-protein-dependent transport system inner membrane component M655_021425 PF00528 Binding-protein-dependent transport system inner membrane component M655_021430 PF00497 Bacterial extracellular solute-binding proteins, family 3 M655_021435 PF00005 ABC transporter M655_021440 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) M655_021450 PF12823 Domain of unknown function (DUF3817) M655_021460 PF07690 Major Facilitator Superfamily M655_021465 PF07992 Pyridine nucleotide-disulphide oxidoreductase M655_021475 PF03626 Prokaryotic Cytochrome C oxidase subunit IV M655_021480 PF00510 Cytochrome c oxidase subunit III M655_021485 PF00115 Cytochrome C and Quinol oxidase polypeptide I M655_021490 PF02790 Cytochrome C oxidase subunit II, transmembrane domain M655_021500 PF05145 Transition state regulatory protein AbrB M655_021505 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M655_021505 PF03466 LysR substrate binding domain M655_021510 PF03741 Integral membrane protein TerC family M655_021545 PF04293 SpoVR like protein M655_021555 PF04241 Protein of unknown function (DUF423) M655_021565 PF13538 UvrD-like helicase C-terminal domain M655_021585 PF12706 Beta-lactamase superfamily domain M655_021595 PF00042 Globin M655_021595 PF00175 Oxidoreductase NAD-binding domain M655_021595 PF00970 Oxidoreductase FAD-binding domain M655_021610 PF03205 Molybdopterin guanine dinucleotide synthesis protein B M655_021615 PF00994 Probable molybdopterin binding domain M655_021615 PF03454 MoeA C-terminal region (domain IV) M655_021615 PF03453 MoeA N-terminal region (domain I and II) M655_021620 PF00384 Molybdopterin oxidoreductase M655_021620 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region M655_021620 PF01568 Molydopterin dinucleotide binding domain M655_021620 PF12838 4Fe-4S dicluster domain M655_021620 PF04879 Molybdopterin oxidoreductase Fe4S4 domain M655_021630 PF07690 Major Facilitator Superfamily M655_021635 PF02634 FdhD/NarQ family M655_021640 PF12804 MobA-like NTP transferase domain M655_021645 PF00210 Ferritin-like domain M655_021655 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M655_021655 PF02743 Cache domain M655_021655 PF00672 HAMP domain M655_021660 PF00107 Zinc-binding dehydrogenase M655_021660 PF08240 Alcohol dehydrogenase GroES-like domain M655_021670 PF01638 HxlR-like helix-turn-helix M655_021690 PF13333 Integrase core domain M655_021690 PF13276 HTH-like domain M655_021690 PF00665 Integrase core domain M655_021730 PF00459 Inositol monophosphatase family M655_021745 PF00324 Amino acid permease M655_021755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M655_021755 PF03466 LysR substrate binding domain M655_021760 PF03788 LrgA family M655_021765 PF04172 LrgB-like family M655_021770 PF01925 Sulfite exporter TauE/SafE M655_021780 PF07849 Protein of unknown function (DUF1641) M655_021790 PF00155 Aminotransferase class I and II M655_021795 PF01037 Lrp/AsnC ligand binding domain M655_021810 PF00857 Isochorismatase family M655_021815 PF01467 Cytidylyltransferase-like M655_021825 PF13276 HTH-like domain M655_021825 PF00665 Integrase core domain M655_021825 PF13333 Integrase core domain M655_021830 PF00990 Diguanylate cyclase, GGDEF domain M655_021830 PF00563 EAL domain M655_021830 PF03707 Bacterial signalling protein N terminal repeat M655_021835 PF02086 D12 class N6 adenine-specific DNA methyltransferase M655_021840 PF01381 Helix-turn-helix M655_021850 PF01070 FMN-dependent dehydrogenase M655_021875 PF03551 Transcriptional regulator PadR-like family M655_021885 PF00005 ABC transporter M655_021890 PF00528 Binding-protein-dependent transport system inner membrane component M655_021900 PF08713 DNA alkylation repair enzyme M655_021910 PF03591 AzlC protein M655_021915 PF11495 Archaeal transcriptional regulator TrmB M655_021915 PF01978 Sugar-specific transcriptional regulator TrmB M655_021930 PF02743 Cache domain M655_021930 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M655_021930 PF00672 HAMP domain M655_021935 PF00072 Response regulator receiver domain M655_021935 PF00990 Diguanylate cyclase, GGDEF domain M655_021955 PF09827 CRISPR associated protein Cas2 M655_021960 PF01930 Domain of unknown function DUF83 M655_021960 PF01867 CRISPR associated protein Cas1 M655_021980 PF13542 Helix-turn-helix domain of transposase family ISL3 M655_021980 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 M655_021980 PF01610 Transposase M655_022000 PF02525 Flavodoxin-like fold M655_022010 PF04285 Protein of unknown function (DUF444) M655_022015 PF08298 PrkA AAA domain M655_022015 PF06798 PrkA serine protein kinase C-terminal domain M655_022030 PF13419 Haloacid dehalogenase-like hydrolase M655_022035 PF00588 SpoU rRNA Methylase family M655_022045 PF12671 Putative amidase domain M655_022050 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain M655_022050 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain M655_022055 PF08331 Domain of unknown function (DUF1730) M655_022060 PF00075 RNase H M655_022070 PF00860 Permease family M655_022075 PF07992 Pyridine nucleotide-disulphide oxidoreductase M655_022080 PF01497 Periplasmic binding protein M655_022100 PF00005 ABC transporter M655_022100 PF00664 ABC transporter transmembrane region M655_022105 PF12833 Helix-turn-helix domain M655_022105 PF00072 Response regulator receiver domain M655_022180 PF00665 Integrase core domain M655_022180 PF13936 Helix-turn-helix domain M655_022185 PF02110 Hydroxyethylthiazole kinase family M655_022195 PF01139 tRNA-splicing ligase RtcB M655_022200 PF18576 Helix-turn-helix domain M655_022200 PF14540 Nucleotidyltransferase-like M655_022205 PF11023 Zinc-ribbon containing domain M655_022210 PF00704 Glycosyl hydrolases family 18 M655_022215 PF01475 Ferric uptake regulator family M655_022220 PF10576 Iron-sulfur binding domain of endonuclease III M655_022220 PF00633 Helix-hairpin-helix motif M655_022220 PF00730 HhH-GPD superfamily base excision DNA repair protein M655_022225 PF16363 GDP-mannose 4,6 dehydratase M655_022230 PF01923 Cobalamin adenosyltransferase M655_022235 PF13649 Methyltransferase domain M655_022240 PF05343 M42 glutamyl aminopeptidase M655_022245 PF00578 AhpC/TSA family M655_022255 PF13419 Haloacid dehalogenase-like hydrolase M655_022260 PF03129 Anticodon binding domain M655_022260 PF09180 Prolyl-tRNA synthetase, C-terminal M655_022260 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M655_022265 PF12822 ECF transporter, substrate-specific component M655_022280 PF00005 ABC transporter M655_022290 PF00202 Aminotransferase class-III M655_022295 PF04298 Putative neutral zinc metallopeptidase M655_022300 PF03807 NADP oxidoreductase coenzyme F420-dependent M655_022300 PF14748 Pyrroline-5-carboxylate reductase dimerisation M655_022305 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase M655_022305 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase M655_022320 PF07690 Major Facilitator Superfamily M655_022320 PF00083 Sugar (and other) transporter M655_022325 PF00664 ABC transporter transmembrane region M655_022325 PF00005 ABC transporter M655_022330 PF04167 Protein of unknown function (DUF402) M655_022335 PF00583 Acetyltransferase (GNAT) family M655_022335 PF13508 Acetyltransferase (GNAT) domain M655_022350 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M655_022350 PF02743 Cache domain M655_022350 PF00672 HAMP domain M655_022360 PF00730 HhH-GPD superfamily base excision DNA repair protein M655_022360 PF00633 Helix-hairpin-helix motif M655_022360 PF14815 NUDIX domain M655_022370 PF04307 LexA-binding, inner membrane-associated putative hydrolase M655_022380 PF02627 Carboxymuconolactone decarboxylase family M655_022390 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase M655_022395 PF02777 Iron/manganese superoxide dismutases, C-terminal domain M655_022395 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain M655_022400 PF01925 Sulfite exporter TauE/SafE M655_022415 PF11741 AMIN domain M655_022415 PF01520 N-acetylmuramoyl-L-alanine amidase M655_022425 PF00149 Calcineurin-like phosphoesterase M655_022430 PF00196 Bacterial regulatory proteins, luxR family M655_022430 PF00072 Response regulator receiver domain M655_022435 PF07730 Histidine kinase M655_022435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_022435 PF00672 HAMP domain M655_022440 PF09922 Cell wall-active antibiotics response 4TMS YvqF M655_022445 PF00398 Ribosomal RNA adenine dimethylase M655_022450 PF04012 PspA/IM30 family M655_022460 PF08239 Bacterial SH3 domain M655_022460 PF00877 NlpC/P60 family M655_022460 PF01476 LysM domain M655_022465 PF00072 Response regulator receiver domain M655_022465 PF00486 Transcriptional regulatory protein, C terminal M655_022475 PF00067 Cytochrome P450 M655_022480 PF02632 BioY family M655_022500 PF00291 Pyridoxal-phosphate dependent enzyme M655_022500 PF00585 C-terminal regulatory domain of Threonine dehydratase M655_022510 PF01938 TRAM domain M655_022510 PF05958 tRNA (Uracil-5-)-methyltransferase M655_022535 PF01609 Transposase DDE domain M655_022560 PF00293 NUDIX domain M655_022560 PF13344 Haloacid dehalogenase-like hydrolase M655_022575 PF01323 DSBA-like thioredoxin domain M655_022580 PF08402 TOBE domain M655_022580 PF00005 ABC transporter M655_022590 PF13416 Bacterial extracellular solute-binding protein M655_022595 PF00512 His Kinase A (phospho-acceptor) domain M655_022595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_022595 PF18719 ArlS sensor domain M655_022600 PF00486 Transcriptional regulatory protein, C terminal M655_022600 PF00072 Response regulator receiver domain M655_022605 PF00080 Copper/zinc superoxide dismutase (SODC) M655_022610 PF02621 Menaquinone biosynthesis M655_022615 PF01048 Phosphorylase superfamily M655_022625 PF00313 'Cold-shock' DNA-binding domain M655_022630 PF04346 Ethanolamine utilisation protein, EutH M655_022640 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 M655_022640 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) M655_022645 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_022645 PF00512 His Kinase A (phospho-acceptor) domain M655_022650 PF00072 Response regulator receiver domain M655_022650 PF00486 Transcriptional regulatory protein, C terminal M655_022660 PF00005 ABC transporter M655_022695 PF00892 EamA-like transporter family M655_022710 PF00512 His Kinase A (phospho-acceptor) domain M655_022710 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_022710 PF00672 HAMP domain M655_022715 PF00486 Transcriptional regulatory protein, C terminal M655_022715 PF00072 Response regulator receiver domain M655_022720 PF05525 Branched-chain amino acid transport protein M655_022725 PF00730 HhH-GPD superfamily base excision DNA repair protein M655_022730 PF01619 Proline dehydrogenase M655_022735 PF02954 Bacterial regulatory protein, Fis family M655_022735 PF00158 Sigma-54 interaction domain M655_022735 PF00989 PAS fold M655_022740 PF00486 Transcriptional regulatory protein, C terminal M655_022740 PF00072 Response regulator receiver domain M655_022750 PF07995 Glucose / Sorbosone dehydrogenase M655_022765 PF10776 Protein of unknown function (DUF2600) M655_022770 PF08664 YcbB domain M655_022770 PF00072 Response regulator receiver domain M655_022775 PF16868 NMT1-like family M655_022790 PF17783 CvfB-like winged helix domain M655_022790 PF13509 S1 domain M655_022795 PF02673 Bacitracin resistance protein BacA M655_022815 PF00909 Ammonium Transporter Family M655_022825 PF14480 DNA polymerase III polC-type N-terminus I M655_022825 PF00929 Exonuclease M655_022825 PF02811 PHP domain M655_022825 PF14579 Helix-hairpin-helix motif M655_022825 PF17657 Bacterial DNA polymerase III alpha subunit finger domain M655_022825 PF11490 DNA polymerase III polC-type N-terminus II M655_022825 PF07733 Bacterial DNA polymerase III alpha NTPase domain M655_022835 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) M655_022835 PF03129 Anticodon binding domain M655_022835 PF04073 Aminoacyl-tRNA editing domain M655_022845 PF01513 ATP-NAD kinase M655_022850 PF00293 NUDIX domain M655_022865 PF01266 FAD dependent oxidoreductase M655_022870 PF00342 Phosphoglucose isomerase M655_022875 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion M655_022880 PF00005 ABC transporter M655_022885 PF02687 FtsX-like permease family M655_022885 PF12704 MacB-like periplasmic core domain M655_022900 PF00535 Glycosyl transferase family 2 M655_022900 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 M655_022920 PF00571 CBS domain M655_022920 PF03471 Transporter associated domain M655_022920 PF01595 Cyclin M transmembrane N-terminal domain M655_022935 PF00893 Small Multidrug Resistance protein M655_022940 PF00893 Small Multidrug Resistance protein M655_022945 PF01451 Low molecular weight phosphotyrosine protein phosphatase M655_022950 PF12697 Alpha/beta hydrolase family M655_022960 PF01965 DJ-1/PfpI family M655_022965 PF01638 HxlR-like helix-turn-helix M655_022970 PF00691 OmpA family M655_022970 PF13677 Membrane MotB of proton-channel complex MotA/MotB M655_022975 PF01618 MotA/TolQ/ExbB proton channel family M655_022980 PF02535 ZIP Zinc transporter M655_022995 PF12729 Four helix bundle sensory module for signal transduction M655_022995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M655_022995 PF00672 HAMP domain M655_023000 PF01266 FAD dependent oxidoreductase M655_023010 PF00892 EamA-like transporter family M655_023015 PF00583 Acetyltransferase (GNAT) family M655_023020 PF04172 LrgB-like family M655_023025 PF03788 LrgA family M655_023030 PF03466 LysR substrate binding domain M655_023030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M655_023040 PF00480 ROK family M655_023040 PF01047 MarR family M655_023045 PF04204 Homoserine O-succinyltransferase M655_023050 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain M655_023050 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase M655_023055 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain M655_023055 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain M655_023055 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family M655_023060 PF03473 MOSC domain M655_023060 PF03475 3-alpha domain M655_023065 PF01479 S4 domain M655_023065 PF00849 RNA pseudouridylate synthase M655_023070 PF00392 Bacterial regulatory proteins, gntR family M655_023070 PF00155 Aminotransferase class I and II M655_023075 PF00892 EamA-like transporter family M655_023090 PF02673 Bacitracin resistance protein BacA M655_023095 PF00005 ABC transporter M655_023095 PF00664 ABC transporter transmembrane region M655_023100 PF00005 ABC transporter M655_023100 PF00664 ABC transporter transmembrane region M655_023105 PF02386 Cation transport protein M655_023125 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family M655_023125 PF00356 Bacterial regulatory proteins, lacI family M655_023150 PF00005 ABC transporter M655_023160 PF02687 FtsX-like permease family M655_023160 PF12704 MacB-like periplasmic core domain M655_023170 PF01546 Peptidase family M20/M25/M40 M655_023175 PF01546 Peptidase family M20/M25/M40 M655_023175 PF07687 Peptidase dimerisation domain M655_023180 PF03806 AbgT putative transporter family M655_023185 PF07504 Fungalysin/Thermolysin Propeptide Motif M655_023185 PF01447 Thermolysin metallopeptidase, catalytic domain M655_023185 PF03413 Peptidase propeptide and YPEB domain M655_023185 PF02868 Thermolysin metallopeptidase, alpha-helical domain M655_023200 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M655_023235 PF00375 Sodium:dicarboxylate symporter family M655_023240 PF04226 Transglycosylase associated protein M655_023245 PF00795 Carbon-nitrogen hydrolase M655_023260 PF12796 Ankyrin repeats (3 copies) M655_023270 PF00756 Putative esterase M655_023275 PF12833 Helix-turn-helix domain M655_023275 PF01497 Periplasmic binding protein M655_023285 PF02675 S-adenosylmethionine decarboxylase M655_023290 PF05656 Protein of unknown function (DUF805) M655_023300 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M655_023300 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M655_023310 PF00480 ROK family M655_023310 PF01325 Iron dependent repressor, N-terminal DNA binding domain M655_023315 PF00005 ABC transporter M655_023315 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M655_023320 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M655_023320 PF00005 ABC transporter M655_023325 PF00528 Binding-protein-dependent transport system inner membrane component M655_023325 PF12911 N-terminal TM domain of oligopeptide transport permease C M655_023330 PF00528 Binding-protein-dependent transport system inner membrane component M655_023335 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M655_023340 PF01408 Oxidoreductase family, NAD-binding Rossmann fold M655_023340 PF02894 Oxidoreductase family, C-terminal alpha/beta domain M655_023345 PF00480 ROK family M655_023350 PF00072 Response regulator receiver domain M655_023350 PF00196 Bacterial regulatory proteins, luxR family M655_023355 PF07730 Histidine kinase M655_023360 PF00487 Fatty acid desaturase M655_023375 PF01497 Periplasmic binding protein M655_023380 PF12833 Helix-turn-helix domain M655_023380 PF02311 AraC-like ligand binding domain M655_023385 PF01032 FecCD transport family M655_023390 PF01497 Periplasmic binding protein M655_023410 PF00005 ABC transporter M655_023420 PF07969 Amidohydrolase family M655_023430 PF07690 Major Facilitator Superfamily M655_023450 PF06146 Phosphate-starvation-inducible E M655_023470 PF01478 Type IV leader peptidase family M655_023470 PF06750 Bacterial Peptidase A24 N-terminal domain M655_023475 PF07963 Prokaryotic N-terminal methylation motif M655_023475 PF08334 Type II secretion system (T2SS), protein G M655_023480 PF00482 Type II secretion system (T2SS), protein F M655_023485 PF00437 Type II/IV secretion system protein M655_023490 PF05157 Type II secretion system (T2SS), protein E, N-terminal domain M655_023490 PF00437 Type II/IV secretion system protein M655_023525 PF01266 FAD dependent oxidoreductase M655_023540 PF00872 Transposase, Mutator family M655_023565 PF13333 Integrase core domain M655_023565 PF00665 Integrase core domain M655_023565 PF13276 HTH-like domain M655_023600 PF07690 Major Facilitator Superfamily M655_023605 PF00356 Bacterial regulatory proteins, lacI family M655_023610 PF00106 short chain dehydrogenase M655_023615 PF03786 D-mannonate dehydratase (UxuA) M655_023620 PF01081 KDPG and KHG aldolase M655_023625 PF00107 Zinc-binding dehydrogenase M655_023625 PF08240 Alcohol dehydrogenase GroES-like domain M655_023630 PF00294 pfkB family carbohydrate kinase M655_023635 PF08240 Alcohol dehydrogenase GroES-like domain M655_023635 PF00107 Zinc-binding dehydrogenase M655_023640 PF00171 Aldehyde dehydrogenase family M655_023645 PF00206 Lyase M655_023645 PF10415 Fumarase C C-terminus M655_023650 PF09339 IclR helix-turn-helix domain M655_023650 PF01614 Bacterial transcriptional regulator M655_023655 PF00083 Sugar (and other) transporter M655_023665 PF09827 CRISPR associated protein Cas2 M655_023690 PF09704 CRISPR-associated protein (Cas_Cas5) M655_023710 PF00056 lactate/malate dehydrogenase, NAD binding domain M655_023710 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain M655_023715 PF00936 BMC domain M655_023725 PF06130 Phosphate propanoyltransferase M655_023730 PF00936 BMC domain M655_023735 PF16365 Ethanolamine utilization protein EutK C-terminus M655_023735 PF00936 BMC domain M655_023740 PF03319 Ethanolamine utilisation protein EutN/carboxysome M655_023745 PF00936 BMC domain M655_023750 PF00171 Aldehyde dehydrogenase family M655_023750 PF00465 Iron-containing alcohol dehydrogenase M655_023765 PF13520 Amino acid permease M655_023775 PF00202 Aminotransferase class-III M655_023780 PF00455 DeoR C terminal sensor domain M655_023780 PF08220 DeoR-like helix-turn-helix domain M655_023785 PF01609 Transposase DDE domain M655_023790 PF02311 AraC-like ligand binding domain M655_023790 PF12833 Helix-turn-helix domain M655_023810 PF01609 Transposase DDE domain M655_023840 PF09346 SMI1 / KNR4 family (SUKH-1) M655_023845 PF00872 Transposase, Mutator family M655_023855 PF08722 TnsA endonuclease N terminal M655_023855 PF08721 TnsA endonuclease C terminal M655_023880 PF01695 IstB-like ATP binding protein M655_023930 PF18277 AbrB C-terminal domain M655_023930 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin M655_023935 PF01381 Helix-turn-helix M655_023940 PF00990 Diguanylate cyclase, GGDEF domain M655_023940 PF13185 GAF domain M655_023965 PF00293 NUDIX domain M655_023975 PF00149 Calcineurin-like phosphoesterase M655_023990 PF00580 UvrD/REP helicase N-terminal domain M655_023990 PF13361 UvrD-like helicase C-terminal domain M655_024005 PF01609 Transposase DDE domain M655_024015 PF02146 Sir2 family M655_024020 PF02146 Sir2 family M655_024055 PF01938 TRAM domain M655_024055 PF05958 tRNA (Uracil-5-)-methyltransferase M655_024060 PF00781 Diacylglycerol kinase catalytic domain M655_024065 PF00480 ROK family M655_024070 PF00892 EamA-like transporter family M655_024075 PF12679 ABC-2 family transporter protein M655_024080 PF00005 ABC transporter M655_024095 PF04542 Sigma-70 region 2 M655_024095 PF08281 Sigma-70, region 4 M655_024100 PF02637 GatB domain M655_024100 PF02934 GatB/GatE catalytic domain M655_024105 PF01425 Amidase M655_024110 PF02686 Glu-tRNAGln amidotransferase C subunit M655_024120 PF02666 Phosphatidylserine decarboxylase M655_024125 PF03707 Bacterial signalling protein N terminal repeat M655_024125 PF00563 EAL domain M655_024125 PF13188 PAS domain M655_024125 PF00990 Diguanylate cyclase, GGDEF domain M655_024130 PF00953 Glycosyl transferase family 4 M655_024135 PF00171 Aldehyde dehydrogenase family M655_024150 PF03120 NAD-dependent DNA ligase OB-fold domain M655_024150 PF01653 NAD-dependent DNA ligase adenylation domain M655_024150 PF12826 Helix-hairpin-helix motif M655_024150 PF03119 NAD-dependent DNA ligase C4 zinc finger domain M655_024150 PF00533 BRCA1 C Terminus (BRCT) domain M655_024155 PF00580 UvrD/REP helicase N-terminal domain M655_024155 PF13361 UvrD-like helicase C-terminal domain M655_024160 PF04294 VanW like protein M655_024165 PF07786 Protein of unknown function (DUF1624) M655_024165 PF04235 Protein of unknown function (DUF418) M655_024170 PF13520 Amino acid permease M655_024175 PF01884 PcrB family M655_024180 PF01371 Trp repressor protein M655_024185 PF11258 Protein of unknown function (DUF3048) N-terminal domain M655_024185 PF17479 Protein of unknown function (DUF3048) C-terminal domain M655_024190 PF00072 Response regulator receiver domain M655_024190 PF00486 Transcriptional regulatory protein, C terminal M655_024195 PF00672 HAMP domain M655_024195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_024195 PF00512 His Kinase A (phospho-acceptor) domain M655_024205 PF00571 CBS domain M655_024205 PF00478 IMP dehydrogenase / GMP reductase domain M655_024225 PF01546 Peptidase family M20/M25/M40 M655_024225 PF07687 Peptidase dimerisation domain M655_024230 PF00528 Binding-protein-dependent transport system inner membrane component M655_024235 PF00528 Binding-protein-dependent transport system inner membrane component M655_024240 PF08402 TOBE domain M655_024240 PF00005 ABC transporter M655_024245 PF13416 Bacterial extracellular solute-binding protein M655_024250 PF09339 IclR helix-turn-helix domain M655_024250 PF01614 Bacterial transcriptional regulator M655_024265 PF01609 Transposase DDE domain M655_024305 PF00392 Bacterial regulatory proteins, gntR family M655_024305 PF00155 Aminotransferase class I and II M655_024310 PF00005 ABC transporter M655_024315 PF00005 ABC transporter M655_024315 PF12399 Branched-chain amino acid ATP-binding cassette transporter M655_024320 PF11862 Domain of unknown function (DUF3382) M655_024320 PF02653 Branched-chain amino acid transport system / permease component M655_024325 PF02653 Branched-chain amino acid transport system / permease component M655_024330 PF13458 Periplasmic binding protein M655_024335 PF13382 Adenine deaminase C-terminal domain M655_024335 PF01979 Amidohydrolase family M655_024345 PF01047 MarR family M655_024350 PF07690 Major Facilitator Superfamily M655_024355 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain M655_024355 PF02843 Phosphoribosylglycinamide synthetase, C domain M655_024355 PF02844 Phosphoribosylglycinamide synthetase, N domain M655_024360 PF02142 MGS-like domain M655_024360 PF01808 AICARFT/IMPCHase bienzyme M655_024375 PF00990 Diguanylate cyclase, GGDEF domain M655_024375 PF03707 Bacterial signalling protein N terminal repeat M655_024375 PF00563 EAL domain M655_024385 PF00551 Formyl transferase M655_024390 PF02769 AIR synthase related protein, C-terminal domain M655_024390 PF00586 AIR synthase related protein, N-terminal domain M655_024395 PF00156 Phosphoribosyl transferase domain M655_024400 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain M655_024400 PF00586 AIR synthase related protein, N-terminal domain M655_024400 PF02769 AIR synthase related protein, C-terminal domain M655_024410 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase M655_024415 PF01259 SAICAR synthetase M655_024420 PF00465 Iron-containing alcohol dehydrogenase M655_024425 PF02073 Thermophilic metalloprotease (M29) M655_024460 PF00092 von Willebrand factor type A domain M655_024495 PF00092 von Willebrand factor type A domain M655_024510 PF00482 Type II secretion system (T2SS), protein F M655_024515 PF00437 Type II/IV secretion system protein M655_024530 PF06750 Bacterial Peptidase A24 N-terminal domain M655_024530 PF01478 Type IV leader peptidase family M655_024555 PF02417 Chromate transporter M655_024560 PF02417 Chromate transporter M655_024565 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M655_024565 PF00005 ABC transporter M655_024570 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M655_024570 PF00005 ABC transporter M655_024575 PF12911 N-terminal TM domain of oligopeptide transport permease C M655_024575 PF00528 Binding-protein-dependent transport system inner membrane component M655_024580 PF00528 Binding-protein-dependent transport system inner membrane component M655_024585 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M655_024590 PF13404 AsnC-type helix-turn-helix domain M655_024590 PF17805 AsnC-like ligand binding domain M655_024595 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region M655_024600 PF02687 FtsX-like permease family M655_024605 PF00005 ABC transporter M655_024610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_024615 PF00486 Transcriptional regulatory protein, C terminal M655_024615 PF00072 Response regulator receiver domain M655_024620 PF08281 Sigma-70, region 4 M655_024620 PF04542 Sigma-70 region 2 M655_024635 PF10397 Adenylosuccinate lyase C-terminus M655_024635 PF00206 Lyase M655_024640 PF02222 ATP-grasp domain M655_024640 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain M655_024645 PF00731 AIR carboxylase M655_024660 PF13393 Histidyl-tRNA synthetase M655_024660 PF03129 Anticodon binding domain M655_024665 PF00860 Permease family M655_024670 PF00958 GMP synthase C terminal domain M655_024670 PF02540 NAD synthase M655_024670 PF00117 Glutamine amidotransferase class-I M655_024675 PF13559 Domain of unknown function (DUF4129) M655_024675 PF01841 Transglutaminase-like superfamily M655_024675 PF11992 Domain of unknown function (DUF3488) M655_024685 PF07726 ATPase family associated with various cellular activities (AAA) M655_024685 PF17863 AAA lid domain M655_024730 PF08460 Bacterial SH3 domain M655_024730 PF01551 Peptidase family M23 M655_024765 PF04865 Baseplate J-like protein M655_024770 PF10934 Protein of unknown function (DUF2634) M655_024785 PF05257 CHAP domain M655_024785 PF01476 LysM domain M655_024895 PF01555 DNA methylase M655_024915 PF12950 TaqI-like C-terminal specificity domain M655_024915 PF07669 Eco57I restriction-modification methylase M655_024920 PF00145 C-5 cytosine-specific DNA methylase M655_024950 PF02511 Thymidylate synthase complementing protein M655_024955 PF00692 dUTPase M655_024960 PF13638 PIN domain M655_024960 PF02562 PhoH-like protein M655_024975 PF17975 Ribonucleotide reductase alpha domain M655_024975 PF02867 Ribonucleotide reductase, barrel domain M655_024990 PF02075 Crossover junction endodeoxyribonuclease RuvC M655_025000 PF00929 Exonuclease M655_025020 PF09281 Taq polymerase, exonuclease M655_025020 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain M655_025020 PF00476 DNA polymerase family A M655_025020 PF01367 5'-3' exonuclease, C-terminal SAM fold M655_025085 PF01695 IstB-like ATP binding protein M655_025085 PF07319 Primosomal protein DnaI N-terminus M655_025145 PF00589 Phage integrase family M655_025145 PF02899 Phage integrase, N-terminal SAM-like domain M655_025235 PF00118 TCP-1/cpn60 chaperonin family M655_025240 PF00166 Chaperonin 10 Kd subunit M655_025245 PF00188 Cysteine-rich secretory protein family M655_025245 PF14504 CAP-associated N-terminal M655_025255 PF00902 Sec-independent protein translocase protein (TatC) M655_025260 PF02416 mttA/Hcf106 family M655_025265 PF00994 Probable molybdopterin binding domain M655_025265 PF02464 Competence-damaged protein M655_025270 PF00994 Probable molybdopterin binding domain M655_025270 PF01967 MoaC family M655_025275 PF01812 5-formyltetrahydrofolate cyclo-ligase family M655_025280 PF12848 ABC transporter M655_025280 PF00005 ABC transporter M655_025280 PF16326 ABC transporter C-terminal domain M655_025290 PF00814 Glycoprotease family M655_025295 PF00583 Acetyltransferase (GNAT) family M655_025300 PF00814 Glycoprotease family M655_025305 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE M655_025310 PF00586 AIR synthase related protein, N-terminal domain M655_025310 PF02769 AIR synthase related protein, C-terminal domain M655_025315 PF17283 SprT-like zinc ribbon domain M655_025315 PF10263 SprT-like family M655_025330 PF16921 Tex protein YqgF-like domain M655_025330 PF00575 S1 RNA binding domain M655_025330 PF09371 Tex-like protein N-terminal domain M655_025330 PF17674 HHH domain M655_025335 PF04545 Sigma-70, region 4 M655_025335 PF04542 Sigma-70 region 2 M655_025335 PF04539 Sigma-70 region 3 M655_025340 PF13581 Histidine kinase-like ATPase domain M655_025345 PF01740 STAS domain M655_025350 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain M655_025350 PF07228 Stage II sporulation protein E (SpoIIE) M655_025355 PF13581 Histidine kinase-like ATPase domain M655_025360 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system M655_025365 PF01402 Ribbon-helix-helix protein, copG family M655_025370 PF00842 Alanine racemase, C-terminal domain M655_025370 PF01168 Alanine racemase, N-terminal domain M655_025390 PF01648 4'-phosphopantetheinyl transferase superfamily M655_025405 PF01022 Bacterial regulatory protein, arsR family M655_025410 PF05199 GMC oxidoreductase M655_025410 PF00732 GMC oxidoreductase M655_025425 PF02040 Arsenical pump membrane protein M655_025430 PF00005 ABC transporter M655_025435 PF00672 HAMP domain M655_025435 PF02743 Cache domain M655_025435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M655_025440 PF00005 ABC transporter M655_025445 PF00528 Binding-protein-dependent transport system inner membrane component M655_025450 PF00528 Binding-protein-dependent transport system inner membrane component M655_025455 PF12849 PBP superfamily domain M655_025465 PF01520 N-acetylmuramoyl-L-alanine amidase M655_025480 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M655_025485 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M655_025490 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M655_025505 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M655_025510 PF03180 NLPA lipoprotein M655_025515 PF00528 Binding-protein-dependent transport system inner membrane component M655_025520 PF00005 ABC transporter M655_025520 PF09383 NIL domain M655_025535 PF03816 Cell envelope-related transcriptional attenuator domain M655_025550 PF00248 Aldo/keto reductase family M655_025555 PF06491 Disulphide isomerase M655_025560 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain M655_025560 PF00753 Metallo-beta-lactamase superfamily M655_025560 PF17770 Ribonuclease J C-terminal domain M655_025575 PF02630 SCO1/SenC M655_025580 PF00581 Rhodanese-like domain M655_025580 PF01206 Sulfurtransferase TusA M655_025590 PF01053 Cys/Met metabolism PLP-dependent enzyme M655_025595 PF01022 Bacterial regulatory protein, arsR family M655_025605 PF07726 ATPase family associated with various cellular activities (AAA) M655_025605 PF17863 AAA lid domain M655_025630 PF00005 ABC transporter M655_025645 PF00155 Aminotransferase class I and II M655_025645 PF00392 Bacterial regulatory proteins, gntR family M655_025655 PF00440 Bacterial regulatory proteins, tetR family M655_025660 PF00724 NADH:flavin oxidoreductase / NADH oxidase family M655_025670 PF00285 Citrate synthase, C-terminal domain M655_025675 PF03466 LysR substrate binding domain M655_025675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M655_025695 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M655_025695 PF12793 Sugar transport-related sRNA regulator N-term M655_025705 PF00672 HAMP domain M655_025705 PF05227 CHASE3 domain M655_025705 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M655_025710 PF00574 Clp protease M655_025725 PF12706 Beta-lactamase superfamily domain M655_025730 PF01037 Lrp/AsnC ligand binding domain M655_025750 PF00999 Sodium/hydrogen exchanger family M655_025755 PF02595 Glycerate kinase family M655_025760 PF00471 Ribosomal protein L33 M655_025765 PF02492 CobW/HypB/UreG, nucleotide-binding domain M655_025765 PF07683 Cobalamin synthesis protein cobW C-terminal domain M655_025785 PF00072 Response regulator receiver domain M655_025785 PF00486 Transcriptional regulatory protein, C terminal M655_025790 PF00512 His Kinase A (phospho-acceptor) domain M655_025790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_025790 PF16736 Single Cache-like M655_025790 PF00989 PAS fold M655_025795 PF00881 Nitroreductase family M655_025805 PF00115 Cytochrome C and Quinol oxidase polypeptide I M655_025810 PF00116 Cytochrome C oxidase subunit II, periplasmic domain M655_025810 PF09125 Cytochrome C oxidase subunit II, transmembrane M655_025825 PF00196 Bacterial regulatory proteins, luxR family M655_025825 PF00072 Response regulator receiver domain M655_025830 PF07730 Histidine kinase M655_025830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_025840 PF07833 Copper amine oxidase N-terminal domain M655_025845 PF13542 Helix-turn-helix domain of transposase family ISL3 M655_025845 PF01610 Transposase M655_025845 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 M655_025855 PF09560 Sporulation protein YunB (Spo_YunB) M655_025860 PF00690 Cation transporter/ATPase, N-terminus M655_025860 PF00689 Cation transporting ATPase, C-terminus M655_025865 PF00381 PTS HPr component phosphorylation site M655_025870 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 M655_025870 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit M655_025875 PF00294 pfkB family carbohydrate kinase M655_025880 PF00455 DeoR C terminal sensor domain M655_025880 PF08220 DeoR-like helix-turn-helix domain M655_025885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain M655_025885 PF08447 PAS fold M655_025885 PF13426 PAS domain M655_025890 PF02659 Putative manganese efflux pump M655_025910 PF02702 Osmosensitive K+ channel His kinase sensor domain M655_025915 PF02669 K+-transporting ATPase, c chain M655_025925 PF03814 Potassium-transporting ATPase A subunit M655_025935 PF10057 Uncharacterized conserved protein (DUF2294) M655_025940 PF00005 ABC transporter M655_025940 PF08402 TOBE domain M655_025945 PF00528 Binding-protein-dependent transport system inner membrane component M655_025950 PF01547 Bacterial extracellular solute-binding protein M655_025955 PF01975 Survival protein SurE M655_025970 PF00403 Heavy-metal-associated domain M655_025975 PF00403 Heavy-metal-associated domain M655_025980 PF04227 Indigoidine synthase A like protein M655_025985 PF00294 pfkB family carbohydrate kinase M655_025990 PF01047 MarR family M655_025995 PF02525 Flavodoxin-like fold M655_026000 PF07681 DoxX M655_026005 PF17954 Quercetinase C-terminal cupin domain M655_026005 PF02678 Pirin M655_026010 PF07690 Major Facilitator Superfamily M655_026015 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain M655_026015 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain M655_026025 PF02954 Bacterial regulatory protein, Fis family M655_026025 PF00989 PAS fold M655_026025 PF00158 Sigma-54 interaction domain M655_026030 PF03606 C4-dicarboxylate anaerobic carrier M655_026035 PF07687 Peptidase dimerisation domain M655_026035 PF01546 Peptidase family M20/M25/M40 M655_026040 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M655_026040 PF13378 Enolase C-terminal domain-like M655_026050 PF01521 Iron-sulphur cluster biosynthesis M655_026055 PF16736 Single Cache-like M655_026055 PF00989 PAS fold M655_026055 PF00512 His Kinase A (phospho-acceptor) domain M655_026055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_026060 PF00072 Response regulator receiver domain M655_026060 PF00486 Transcriptional regulatory protein, C terminal M655_026090 PF00989 PAS fold M655_026090 PF00158 Sigma-54 interaction domain M655_026090 PF02954 Bacterial regulatory protein, Fis family M655_026105 PF00881 Nitroreductase family M655_026110 PF01032 FecCD transport family M655_026115 PF01032 FecCD transport family M655_026120 PF01497 Periplasmic binding protein M655_026125 PF12833 Helix-turn-helix domain M655_026125 PF01497 Periplasmic binding protein M655_026130 PF01476 LysM domain M655_026135 PF01476 LysM domain M655_026145 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M655_026145 PF00005 ABC transporter M655_026150 PF00403 Heavy-metal-associated domain M655_026155 PF13542 Helix-turn-helix domain of transposase family ISL3 M655_026155 PF01610 Transposase M655_026155 PF14690 zinc-finger of transposase IS204/IS1001/IS1096/IS1165 M655_026185 PF01022 Bacterial regulatory protein, arsR family M655_026190 PF00403 Heavy-metal-associated domain M655_026205 PF00672 HAMP domain M655_026205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_026205 PF00512 His Kinase A (phospho-acceptor) domain M655_026210 PF00486 Transcriptional regulatory protein, C terminal M655_026210 PF00072 Response regulator receiver domain M655_026215 PF01738 Dienelactone hydrolase family M655_026220 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M655_026225 PF00881 Nitroreductase family M655_026250 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily M655_026255 PF01212 Beta-eliminating lyase M655_026260 PF02805 Metal binding domain of Ada M655_026260 PF12833 Helix-turn-helix domain M655_026265 PF00730 HhH-GPD superfamily base excision DNA repair protein M655_026265 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain M655_026270 PF01261 Xylose isomerase-like TIM barrel M655_026285 PF01047 MarR family M655_026295 PF00196 Bacterial regulatory proteins, luxR family M655_026295 PF00072 Response regulator receiver domain M655_026300 PF01609 Transposase DDE domain M655_026330 PF00356 Bacterial regulatory proteins, lacI family M655_026335 PF00107 Zinc-binding dehydrogenase M655_026335 PF08240 Alcohol dehydrogenase GroES-like domain M655_026340 PF07690 Major Facilitator Superfamily M655_026345 PF00005 ABC transporter M655_026350 PF00005 ABC transporter M655_026355 PF12911 N-terminal TM domain of oligopeptide transport permease C M655_026355 PF00528 Binding-protein-dependent transport system inner membrane component M655_026360 PF00528 Binding-protein-dependent transport system inner membrane component M655_026365 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M655_026370 PF10100 Staphylopine dehydrogenase M655_026400 PF00583 Acetyltransferase (GNAT) family M655_026405 PF00072 Response regulator receiver domain M655_026405 PF00486 Transcriptional regulatory protein, C terminal M655_026410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_026410 PF00512 His Kinase A (phospho-acceptor) domain M655_026415 PF00512 His Kinase A (phospho-acceptor) domain M655_026415 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase M655_026415 PF00672 HAMP domain M655_026415 PF14827 Double sensory domain of two-component sensor kinase M655_026415 PF13426 PAS domain M655_026425 PF07690 Major Facilitator Superfamily M655_026430 PF00005 ABC transporter M655_026430 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M655_026435 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M655_026435 PF00005 ABC transporter M655_026440 PF00528 Binding-protein-dependent transport system inner membrane component M655_026440 PF12911 N-terminal TM domain of oligopeptide transport permease C M655_026445 PF00528 Binding-protein-dependent transport system inner membrane component M655_026450 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M655_026460 PF03466 LysR substrate binding domain M655_026460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family M655_026510 PF01695 IstB-like ATP binding protein M655_026535 PF01695 IstB-like ATP binding protein M655_026550 PF01380 SIS domain M655_026555 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I M655_026555 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III M655_026555 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain M655_026555 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II M655_026565 PF02457 DisA bacterial checkpoint controller nucleotide-binding M655_026570 PF13490 Putative zinc-finger M655_026575 PF04542 Sigma-70 region 2 M655_026575 PF08281 Sigma-70, region 4 M655_026585 PF00491 Arginase family M655_026675 PF01522 Polysaccharide deacetylase M655_026680 PF14089 KinB-signalling pathway activation in sporulation M655_026690 PF10609 NUBPL iron-transfer P-loop NTPase M655_026695 PF01520 N-acetylmuramoyl-L-alanine amidase M655_026700 PF00380 Ribosomal protein S9/S16 M655_026705 PF00572 Ribosomal protein L13 M655_026710 PF01416 tRNA pseudouridine synthase M655_026715 PF02361 Cobalt transport protein M655_026720 PF00005 ABC transporter M655_026725 PF00005 ABC transporter M655_026730 PF01196 Ribosomal protein L17 M655_026735 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain M655_026735 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain M655_026735 PF01000 RNA polymerase Rpb3/RpoA insert domain M655_026740 PF00411 Ribosomal protein S11 M655_026745 PF00416 Ribosomal protein S13/S18 M655_026750 PF00444 Ribosomal protein L36 M655_026755 PF01176 Translation initiation factor 1A / IF-1 M655_026760 PF00557 Metallopeptidase family M24 M655_026765 PF05191 Adenylate kinase, active site lid M655_026770 PF00344 SecY translocase M655_026775 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A M655_026780 PF00327 Ribosomal protein L30p/L7e M655_026785 PF00333 Ribosomal protein S5, N-terminal domain M655_026785 PF03719 Ribosomal protein S5, C-terminal domain M655_026790 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast M655_026795 PF00347 Ribosomal protein L6 M655_026800 PF00410 Ribosomal protein S8 M655_026805 PF00253 Ribosomal protein S14p/S29e M655_026810 PF00673 ribosomal L5P family C-terminus M655_026810 PF00281 Ribosomal protein L5 M655_026815 PF00467 KOW motif M655_026815 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 M655_026820 PF00238 Ribosomal protein L14p/L23e M655_026825 PF00366 Ribosomal protein S17 M655_026830 PF00831 Ribosomal L29 protein M655_026835 PF00252 Ribosomal protein L16p/L10e M655_026840 PF07650 KH domain M655_026840 PF00189 Ribosomal protein S3, C-terminal domain M655_026845 PF00237 Ribosomal protein L22p/L17e M655_026850 PF00203 Ribosomal protein S19 M655_026855 PF00181 Ribosomal Proteins L2, RNA binding domain M655_026855 PF03947 Ribosomal Proteins L2, C-terminal domain M655_026860 PF00276 Ribosomal protein L23 M655_026865 PF00573 Ribosomal protein L4/L1 family M655_026870 PF00297 Ribosomal protein L3 M655_026875 PF00338 Ribosomal protein S10p/S20e M655_026885 PF01152 Bacterial-like globin M655_026890 PF00892 EamA-like transporter family M655_026895 PF03143 Elongation factor Tu C-terminal domain M655_026895 PF03144 Elongation factor Tu domain 2 M655_026895 PF00009 Elongation factor Tu GTP binding domain M655_026900 PF03764 Elongation factor G, domain IV M655_026900 PF14492 Elongation Factor G, domain II M655_026900 PF00679 Elongation factor G C-terminus M655_026900 PF03144 Elongation factor Tu domain 2 M655_026900 PF00009 Elongation factor Tu GTP binding domain M655_026905 PF00177 Ribosomal protein S7p/S5e M655_026910 PF00164 Ribosomal protein S12/S23 M655_026915 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family M655_026920 PF04998 RNA polymerase Rpb1, domain 5 M655_026920 PF05000 RNA polymerase Rpb1, domain 4 M655_026920 PF04983 RNA polymerase Rpb1, domain 3 M655_026920 PF00623 RNA polymerase Rpb1, domain 2 M655_026920 PF04997 RNA polymerase Rpb1, domain 1 M655_026925 PF04561 RNA polymerase Rpb2, domain 2 M655_026925 PF04565 RNA polymerase Rpb2, domain 3 M655_026925 PF10385 RNA polymerase beta subunit external 1 domain M655_026925 PF00562 RNA polymerase Rpb2, domain 6 M655_026925 PF04560 RNA polymerase Rpb2, domain 7 M655_026925 PF04563 RNA polymerase beta subunit M655_026930 PF05175 Methyltransferase small domain M655_026935 PF16320 Ribosomal protein L7/L12 dimerisation domain M655_026935 PF00542 Ribosomal protein L7/L12 C-terminal domain M655_026940 PF00466 Ribosomal protein L10 M655_026945 PF00687 Ribosomal protein L1p/L10e family M655_026950 PF00298 Ribosomal protein L11, RNA binding domain M655_026950 PF03946 Ribosomal protein L11, N-terminal domain M655_026955 PF02357 Transcription termination factor nusG M655_026955 PF00467 KOW motif M655_026960 PF00584 SecE/Sec61-gamma subunits of protein translocation complex M655_026965 PF00471 Ribosomal protein L33 M655_026970 PF08281 Sigma-70, region 4 M655_026970 PF04542 Sigma-70 region 2 M655_026975 PF05991 YacP-like NYN domain M655_026980 PF00588 SpoU rRNA Methylase family M655_026980 PF08032 RNA 2'-O ribose methyltransferase substrate binding M655_026985 PF00636 Ribonuclease III domain M655_026990 PF01406 tRNA synthetases class I (C) catalytic domain M655_026990 PF09190 DALR domain M655_026995 PF06426 Serine acetyltransferase, N-terminal M655_026995 PF00132 Bacterial transferase hexapeptide (six repeats) M655_027000 PF00749 tRNA synthetases class I (E and Q), catalytic domain M655_027020 PF01066 CDP-alcohol phosphatidyltransferase M655_027030 PF18073 Rubredoxin metal binding domain M655_027035 PF00004 ATPase family associated with various cellular activities (AAA) M655_027035 PF02861 Clp amino terminal domain, pathogenicity island component M655_027035 PF07724 AAA domain (Cdc48 subfamily) M655_027035 PF17871 AAA lid domain M655_027035 PF10431 C-terminal, D2-small domain, of ClpB protein M655_027040 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain M655_027045 PF02151 UvrB/uvrC motif M655_027050 PF17727 CtsR C-terminal dimerization domain M655_027050 PF05848 CtsR N-terminal HTH domain M655_027055 PF13419 Haloacid dehalogenase-like hydrolase M655_027060 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase M655_027060 PF04101 Glycosyltransferase family 28 C-terminal domain M655_027090 PF09335 SNARE associated Golgi protein M655_027115 PF01336 OB-fold nucleic acid binding domain M655_027115 PF00152 tRNA synthetases class II (D, K and N) M655_027120 PF03449 Transcription elongation factor, N-terminal M655_027120 PF01272 Transcription elongation factor, GreA/GreB, C-term M655_027125 PF01207 Dihydrouridine synthase (Dus) M655_027130 PF08671 Anti-repressor SinI M655_027130 PF01381 Helix-turn-helix M655_027135 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) M655_027140 PF02152 Dihydroneopterin aldolase M655_027145 PF00809 Pterin binding enzyme M655_027150 PF01063 Amino-transferase class IV M655_027155 PF00902 Sec-independent protein translocase protein (TatC) M655_027160 PF02416 mttA/Hcf106 family M655_027175 PF00005 ABC transporter M655_027205 PF00117 Glutamine amidotransferase class-I M655_027210 PF04715 Anthranilate synthase component I, N terminal region M655_027210 PF00425 chorismate binding enzyme M655_027220 PF00291 Pyridoxal-phosphate dependent enzyme M655_027225 PF13145 PPIC-type PPIASE domain M655_027230 PF01430 Hsp33 protein M655_027235 PF04545 Sigma-70, region 4 M655_027235 PF03979 Sigma-70 factor, region 1.1 M655_027235 PF00140 Sigma-70 factor, region 1.2 M655_027235 PF04542 Sigma-70 region 2 M655_027235 PF04539 Sigma-70 region 3 M655_027240 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M655_027240 PF00005 ABC transporter M655_027245 PF00877 NlpC/P60 family M655_027245 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain M655_027250 PF13378 Enolase C-terminal domain-like M655_027250 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain M655_027255 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle M655_027260 PF08352 Oligopeptide/dipeptide transporter, C-terminal region M655_027260 PF00005 ABC transporter M655_027265 PF00528 Binding-protein-dependent transport system inner membrane component M655_027265 PF12911 N-terminal TM domain of oligopeptide transport permease C M655_027270 PF00528 Binding-protein-dependent transport system inner membrane component M655_027395 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain M655_027475 PF03309 Type III pantothenate kinase M655_027480 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain M655_027480 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain M655_027485 PF02910 Fumarate reductase flavoprotein C-term M655_027485 PF00890 FAD binding domain M655_027490 PF01475 Ferric uptake regulator family M655_027495 PF00950 ABC 3 transport family M655_027500 PF00005 ABC transporter M655_027505 PF01297 Zinc-uptake complex component A periplasmic M655_027515 PF02445 Quinolinate synthetase A protein M655_027525 PF01497 Periplasmic binding protein