locus-tag	class	description
JVX94_00125	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
JVX94_00130	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
JVX94_00135	COG1575	Belongs to the MenA family. Type 1 subfamily
JVX94_00140	COG1169	isochorismate synthase
JVX94_00145	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
JVX94_00150	COG0596	Alpha beta hydrolase
JVX94_00155	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
JVX94_00160	COG0318	PFAM AMP-dependent synthetase and ligase
JVX94_00165	COG4948	Mandelate Racemase Muconate Lactonizing
JVX94_00180	COG1294	oxidase, subunit
JVX94_00185	COG1271	oxidase subunit
JVX94_00190	COG0254	rRNA binding
JVX94_00195	COG0803	Belongs to the bacterial solute-binding protein 9 family
JVX94_00195	COG3443	Belongs to the bacterial solute-binding protein 9 family
JVX94_00200	COG0288	reversible hydration of carbon dioxide
JVX94_00205	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
JVX94_00210	COG1854	S-ribosylhomocysteine lyase activity
JVX94_00225	COG0783	Belongs to the Dps family
JVX94_00235	COG4824	toxin secretion phage lysis holin
JVX94_00250	COG2310	stress, protein
JVX94_00255	COG0494	nUDIX hydrolase
JVX94_00260	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JVX94_00265	COG1116	anion transmembrane transporter activity
JVX94_00270	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JVX94_00290	COG1233	COG1233 Phytoene dehydrogenase and related
JVX94_00295	COG1506	peptidase
JVX94_00305	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
JVX94_00310	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
JVX94_00315	COG0367	asparagine synthase
JVX94_00320	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
JVX94_00325	COG2267	carboxylic ester hydrolase activity
JVX94_00335	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
JVX94_00340	COG1242	4 iron, 4 sulfur cluster binding
JVX94_00355	COG1725	Transcriptional regulator
JVX94_00360	COG1131	(ABC) transporter
JVX94_00370	COG1136	(ABC) transporter
JVX94_00375	COG0577	efflux transmembrane transporter activity
JVX94_00380	COG2433	Pfam Transposase IS66
JVX94_00385	COG1366	Belongs to the anti-sigma-factor antagonist family
JVX94_00385	COG2202	Pas domain
JVX94_00395	COG0495	leucyl-tRNA aminoacylation
JVX94_00400	COG1073	alpha beta
JVX94_00405	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JVX94_00410	COG0395	ABC-type sugar transport system, permease component
JVX94_00415	COG1653	transport
JVX94_00420	COG0656	L-ascorbic acid biosynthetic process
JVX94_00425	COG2814	Major facilitator Superfamily
JVX94_00430	COG1733	regulation of RNA biosynthetic process
JVX94_00435	COG2207	Transcriptional regulator
JVX94_00440	COG4209	transmembrane transport
JVX94_00445	COG4225	unsaturated rhamnogalacturonyl hydrolase activity
JVX94_00450	COG1653	transport
JVX94_00455	COG0673	inositol 2-dehydrogenase activity
JVX94_00460	COG5578	integral membrane protein
JVX94_00465	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JVX94_00475	COG3196	Protein conserved in bacteria
JVX94_00480	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
JVX94_00490	COG2081	HI0933 family
JVX94_00495	COG2244	polysaccharide biosynthetic process
JVX94_00500	COG1187	pseudouridine synthase activity
JVX94_00505	COG1349	DNA-binding transcription factor activity
JVX94_00510	COG2252	PERMEase
JVX94_00515	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JVX94_00520	COG3340	Belongs to the peptidase S51 family
JVX94_00525	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JVX94_00530	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
JVX94_00540	COG1597	lipid kinase activity
JVX94_00545	COG0510	thiamine kinase activity
JVX94_00555	COG0220	tRNA (guanine-N7-)-methyltransferase activity
JVX94_00560	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JVX94_00565	COG0281	malic enzyme
JVX94_00570	COG5584	Small secreted protein
JVX94_00575	COG1363	Peptidase, m42
JVX94_00590	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JVX94_00595	COG4848	Belongs to the UPF0354 family
JVX94_00600	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JVX94_00605	COG1674	ftsk spoiiie
JVX94_00610	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
JVX94_00615	COG4768	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
JVX94_00620	COG4980	gas vesicle protein
JVX94_00625	COG3118	belongs to the thioredoxin family
JVX94_00630	COG1605	Chorismate mutase
JVX94_00630	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
JVX94_00635	COG1609	Transcriptional regulator
JVX94_00640	COG0123	including yeast histone deacetylase and acetoin utilization protein
JVX94_00645	COG0517	IMP dehydrogenase activity
JVX94_00650	COG0454	-acetyltransferase
JVX94_00655	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JVX94_00660	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
JVX94_00665	COG2329	Antibiotic biosynthesis monooxygenase
JVX94_00670	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
JVX94_00675	COG1335	isochorismatase
JVX94_00685	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
JVX94_00690	COG1956	GAF domain-containing protein
JVX94_00695	COG1309	transcriptional regulator
JVX94_00700	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
JVX94_00705	COG4477	modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
JVX94_00710	COG1114	Component of the transport system for branched-chain amino acids
JVX94_00715	COG1114	Component of the transport system for branched-chain amino acids
JVX94_00720	COG1104	cysteine desulfurase activity
JVX94_00725	COG0301	tRNA thio-modification
JVX94_00735	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JVX94_00740	COG1279	arginine transmembrane transporter activity
JVX94_00750	COG2249	NAD(P)H dehydrogenase (quinone) activity
JVX94_00755	COG0402	S-adenosylhomocysteine deaminase activity
JVX94_00760	COG0577	efflux transmembrane transporter activity
JVX94_00765	COG1136	(ABC) transporter
JVX94_00770	COG1695	Transcriptional regulator
JVX94_00775	COG0772	Belongs to the SEDS family
JVX94_00780	COG0642	Histidine kinase
JVX94_00785	COG0745	RESPONSE REGULATOR receiver
JVX94_00790	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JVX94_00795	COG2197	response regulator
JVX94_00800	COG4585	Histidine kinase
JVX94_00805	COG3239	Fatty acid desaturase
JVX94_00815	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
JVX94_00820	COG0616	signal peptide processing
JVX94_00825	COG1714	RDD family
JVX94_00835	COG3874	Sporulation protein YtfJ
JVX94_00840	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
JVX94_00845	COG0827	DNA restriction-modification system
JVX94_00850	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
JVX94_00855	COG0521	Mo-molybdopterin cofactor biosynthetic process
JVX94_00860	COG0137	argininosuccinate synthase activity
JVX94_00865	COG0165	Argininosuccinate lyase
JVX94_00875	COG1028	Short-chain dehydrogenase reductase Sdr
JVX94_00880	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
JVX94_00885	COG4109	DRTGG domain
JVX94_00895	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
JVX94_00915	COG0587	DNA-directed DNA polymerase activity
JVX94_00920	COG0281	malic enzyme
JVX94_00925	COG0777	Component of the acetyl coenzyme A carboxylase (ACC) complex. Biotin carboxylase (BC) catalyzes the carboxylation of biotin on its carrier protein (BCCP) and then the CO(2) group is transferred by the transcarboxylase to acetyl-CoA to form malonyl- CoA
JVX94_00930	COG0825	malonyl-CoA metabolic process
JVX94_00935	COG0205	6-phosphofructokinase activity
JVX94_00945	COG3030	protein affecting phage T7 exclusion by the F plasmid
JVX94_00950	COG0628	permease
JVX94_00955	COG2707	UPF0756 membrane protein
JVX94_00960	COG0372	Belongs to the citrate synthase family
JVX94_00965	COG0538	isocitrate dehydrogenase activity
JVX94_00970	COG0039	L-malate dehydrogenase activity
JVX94_00975	COG0745	RESPONSE REGULATOR receiver
JVX94_00980	COG5002	protein histidine kinase activity
JVX94_00985	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JVX94_00985	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JVX94_00990	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
JVX94_00995	COG1971	Probably functions as a manganese efflux pump
JVX94_01000	COG0237	dephospho-CoA kinase activity
JVX94_01005	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JVX94_01010	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
JVX94_01020	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
JVX94_01025	COG3611	Membrane attachment protein
JVX94_01030	COG1484	DNA-dependent DNA replication
JVX94_01035	COG0398	Pfam SNARE associated Golgi protein
JVX94_01045	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
JVX94_01055	COG1011	Hydrolase
JVX94_01060	COG3275	phosphorelay sensor kinase activity
JVX94_01065	COG3279	Response regulator of the LytR AlgR family
JVX94_01075	COG1346	cytolysis
JVX94_01080	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
JVX94_01085	COG0291	Belongs to the bacterial ribosomal protein bL35 family
JVX94_01090	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
JVX94_01095	COG3326	Membrane
JVX94_01105	COG1363	Peptidase, m42
JVX94_01110	COG1966	Carbon starvation protein
JVX94_01120	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JVX94_01125	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
JVX94_01130	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JVX94_01130	COG0072	phenylalanine-tRNA ligase activity
JVX94_01135	COG1039	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
JVX94_01140	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
JVX94_01145	COG1286	toxin biosynthetic process
JVX94_01150	COG1796	DNA polymerase
JVX94_01150	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
JVX94_01155	COG1193	negative regulation of DNA recombination
JVX94_01160	COG3766	membrane
JVX94_01170	COG0318	PFAM AMP-dependent synthetase and ligase
JVX94_01175	COG1309	transcriptional regulator
JVX94_01180	COG1024	Enoyl-CoA hydratase
JVX94_01185	COG2086	electron transfer activity
JVX94_01190	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
JVX94_01195	COG3534	alpha-L-arabinofuranosidase
JVX94_01200	COG3118	belongs to the thioredoxin family
JVX94_01205	COG0322	excinuclease ABC activity
JVX94_01210	COG0527	aspartate kinase activity
JVX94_01215	COG1719	4-vinyl reductase, 4VR
JVX94_01220	COG2009	succinate dehydrogenase
JVX94_01225	COG1053	succinate dehydrogenase
JVX94_01230	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
JVX94_01235	COG0824	Thioesterase
JVX94_01245	COG2828	Protein conserved in bacteria
JVX94_01250	COG0583	DNA-binding transcription factor activity
JVX94_01255	COG2851	Citrate transporter
JVX94_01260	COG2197	response regulator
JVX94_01265	COG1846	Transcriptional regulator
JVX94_01270	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
JVX94_01275	COG5401	PFAM Sporulation and spore germination
JVX94_01280	COG0689	Phosphorolytic exoribonuclease that removes nucleotide residues following the -CCA terminus of tRNA and adds nucleotides to the ends of RNA molecules by using nucleoside diphosphates as substrates
JVX94_01285	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
JVX94_01290	COG0622	Phosphoesterase
JVX94_01300	COG1028	Short-chain dehydrogenase reductase Sdr
JVX94_01315	COG0346	lactoylglutathione lyase activity
JVX94_01330	COG1696	Membrane protein involved in D-alanine export
JVX94_01335	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JVX94_01340	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
JVX94_01345	COG3339	Conserved Protein
JVX94_01350	COG2706	6-phosphogluconolactonase activity
JVX94_01355	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JVX94_01360	COG0028	Belongs to the TPP enzyme family
JVX94_01365	COG0440	acetolactate synthase activity
JVX94_01370	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
JVX94_01375	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
JVX94_01380	COG0473	3-isopropylmalate dehydrogenase activity
JVX94_01385	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
JVX94_01390	COG0066	3-isopropylmalate dehydratase activity
JVX94_01395	COG1477	protein flavinylation
JVX94_01395	COG0457	Tetratricopeptide repeat
JVX94_01400	COG0544	peptidyl-prolyl cis-trans isomerase activity
JVX94_01405	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
JVX94_01410	COG0470	DNA polymerase III
JVX94_01410	COG1067	ATP-dependent peptidase activity
JVX94_01415	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
JVX94_01420	COG0218	Necessary for normal cell division and for the maintenance of normal septation
JVX94_01430	COG0373	Catalyzes the NADPH-dependent reduction of glutamyl- tRNA(Glu) to glutamate 1-semialdehyde (GSA)
JVX94_01435	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JVX94_01440	COG0181	hydroxymethylbilane synthase activity
JVX94_01445	COG1587	Uroporphyrinogen-III synthase
JVX94_01450	COG0113	porphobilinogen synthase activity
JVX94_01455	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
JVX94_01460	COG1388	LysM domain
JVX94_01465	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
JVX94_01475	COG0525	valine-tRNA ligase activity
JVX94_01480	COG0285	dihydrofolate synthase activity
JVX94_01485	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
JVX94_01495	COG0424	maF-like protein
JVX94_01500	COG2003	Belongs to the UPF0758 family
JVX94_01505	COG1077	Cell shape determining protein MreB Mrl
JVX94_01515	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
JVX94_01520	COG0850	regulation of cytokinetic process
JVX94_01525	COG2894	cell division
JVX94_01530	COG0739	heme binding
JVX94_01535	COG1994	Peptidase M50
JVX94_01540	COG0261	This protein binds to 23S rRNA in the presence of protein L20
JVX94_01545	COG2868	ribosomal protein
JVX94_01550	COG0211	Belongs to the bacterial ribosomal protein bL27 family
JVX94_01555	COG3290	protein histidine kinase activity
JVX94_01560	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
JVX94_01565	COG4492	Belongs to the UPF0735 family
JVX94_01570	COG0077	Prephenate dehydratase
JVX94_01575	COG1827	regulation of RNA biosynthetic process
JVX94_01580	COG1104	cysteine desulfurase activity
JVX94_01585	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
JVX94_01590	COG0157	Belongs to the NadC ModD family
JVX94_01595	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
JVX94_01600	COG1388	LysM domain
JVX94_01615	COG0422	Catalyzes the synthesis of the hydroxymethylpyrimidine phosphate (HMP-P) moiety of thiamine from aminoimidazole ribotide (AIR) in a radical S-adenosyl-L-methionine (SAM)-dependent reaction
JVX94_01630	COG2112	serine threonine protein kinase
JVX94_01640	COG0632	four-way junction helicase activity
JVX94_01645	COG2255	four-way junction helicase activity
JVX94_01655	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
JVX94_01660	COG0343	queuine tRNA-ribosyltransferase activity
JVX94_01665	COG1862	Preprotein translocase
JVX94_01675	COG2323	membrane
JVX94_01680	COG2244	polysaccharide biosynthetic process
JVX94_01690	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JVX94_01690	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JVX94_01695	COG0490	domain, Protein
JVX94_01700	COG5416	Lipopolysaccharide assembly protein A domain
JVX94_01705	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
JVX94_01705	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
JVX94_01710	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
JVX94_01715	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
JVX94_01720	COG1490	D-aminoacyl-tRNA deacylase activity
JVX94_01725	COG4991	sh3 domain protein
JVX94_01725	COG3103	Sh3 type 3 domain protein
JVX94_01725	COG0860	N-Acetylmuramoyl-L-alanine amidase
JVX94_01735	COG0124	histidyl-tRNA synthetase
JVX94_01750	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
JVX94_01755	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
JVX94_01760	COG1959	2 iron, 2 sulfur cluster binding
JVX94_01765	COG1104	cysteine desulfurase activity
JVX94_01770	COG0482	sulfurtransferase activity
JVX94_01775	COG0457	Tetratricopeptide repeat
JVX94_01780	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
JVX94_01785	COG3881	PFAM PRC-barrel domain
JVX94_01800	COG0765	amino acid transport
JVX94_01805	COG0765	amino acid transport
JVX94_01810	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JVX94_01815	COG1126	abc transporter atp-binding protein
JVX94_01820	COG0628	permease
JVX94_01825	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
JVX94_01830	COG4472	Bacterial protein of unknown function (DUF965)
JVX94_01835	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
JVX94_01840	COG3906	Belongs to the UPF0473 family
JVX94_01845	COG1268	BioY protein
JVX94_01850	COG0318	PFAM AMP-dependent synthetase and ligase
JVX94_01855	COG0183	Belongs to the thiolase family
JVX94_01860	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
JVX94_01865	COG4122	O-methyltransferase activity
JVX94_01870	COG0826	peptidase U32
JVX94_01875	COG0826	peptidase U32
JVX94_01880	COG0572	uridine kinase
JVX94_01890	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
JVX94_01895	COG0768	penicillin binding
JVX94_01910	COG2226	methyltransferase
JVX94_01915	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
JVX94_01920	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JVX94_01925	COG0626	cystathionine gamma-synthase activity
JVX94_01950	COG2226	methyltransferase
JVX94_01955	COG1063	alcohol dehydrogenase
JVX94_01960	COG2226	methyltransferase
JVX94_01965	COG1131	(ABC) transporter
JVX94_01970	COG0842	Transport permease protein
JVX94_01970	COG1511	domain protein
JVX94_01975	COG0842	Transport permease protein
JVX94_01980	COG0583	DNA-binding transcription factor activity
JVX94_01985	COG1115	amino acid carrier protein
JVX94_01995	COG1028	Short-chain dehydrogenase reductase Sdr
JVX94_02005	COG1063	alcohol dehydrogenase
JVX94_02010	COG3546	catalase activity
JVX94_02020	COG0765	amino acid transport
JVX94_02025	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JVX94_02030	COG1126	abc transporter atp-binding protein
JVX94_02035	COG1960	acyl-CoA dehydrogenase activity
JVX94_02040	COG2602	Beta-lactamase
JVX94_02060	COG1733	regulation of RNA biosynthetic process
JVX94_02065	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
JVX94_02070	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
JVX94_02080	COG1846	Transcriptional regulator
JVX94_02090	COG1609	Transcriptional regulator
JVX94_02105	COG2160	L-arabinose isomerase activity
JVX94_02125	COG1131	(ABC) transporter
JVX94_02160	COG0726	polysaccharide deacetylase
JVX94_02185	COG2318	DinB family
JVX94_02210	COG0457	Tetratricopeptide repeat
JVX94_02220	COG2755	lipolytic protein G-D-S-L family
JVX94_02235	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
JVX94_02240	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
JVX94_02245	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
JVX94_02250	COG1534	Rna-binding protein
JVX94_02255	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
JVX94_02260	COG1713	HD superfamily hydrolase involved in NAD metabolism
JVX94_02265	COG0799	negative regulation of ribosome biogenesis
JVX94_02270	COG2226	methyltransferase
JVX94_02275	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JVX94_02280	COG1555	photosystem II stabilization
JVX94_02285	COG2131	deaminase
JVX94_02290	COG0658	competence protein
JVX94_02290	COG2333	competence protein COMEC
JVX94_02300	COG1466	dna polymerase III delta subunit
JVX94_02305	COG0268	Binds directly to 16S ribosomal RNA
JVX94_02310	COG0680	Initiates the rapid degradation of small, acid-soluble proteins during spore germination
JVX94_02315	COG0860	N-Acetylmuramoyl-L-alanine amidase
JVX94_02325	COG0481	GTPase activity
JVX94_02330	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JVX94_02335	COG1420	regulation of RNA biosynthetic process
JVX94_02340	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
JVX94_02345	COG0443	Heat shock 70 kDa protein
JVX94_02350	COG0484	heat shock protein binding
JVX94_02355	COG2264	protein methyltransferase activity
JVX94_02360	COG1385	rRNA (uridine-N3-)-methyltransferase activity
JVX94_02365	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
JVX94_02370	COG1283	sodium-dependent phosphate transmembrane transporter activity
JVX94_02380	COG1610	YqeY-like protein
JVX94_02385	COG1030	water channel activity
JVX94_02390	COG4864	UPF0365 protein
JVX94_02405	COG0561	phosphatase activity
JVX94_02410	COG1702	phosphate starvation-inducible protein PhoH
JVX94_02415	COG1480	7TM receptor with intracellular HD hydrolase
JVX94_02420	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
JVX94_02425	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
JVX94_02430	COG0295	cytidine deaminase activity
JVX94_02435	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
JVX94_02445	COG1381	Involved in DNA repair and RecF pathway recombination
JVX94_02450	COG0752	glycyl-tRNA synthetase alpha subunit
JVX94_02455	COG0751	glycine-tRNA ligase activity
JVX94_02460	COG0517	IMP dehydrogenase activity
JVX94_02465	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
JVX94_02470	COG1671	Belongs to the UPF0178 family
JVX94_02475	COG0358	DNA primase activity
JVX94_02480	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
JVX94_02485	COG2010	Cytochrome c
JVX94_02490	COG2384	SAM-dependent methyltransferase
JVX94_02495	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
JVX94_02500	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
JVX94_02510	COG0513	Belongs to the DEAD box helicase family
JVX94_02515	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
JVX94_02525	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JVX94_02530	COG1121	(ABC) transporter
JVX94_02535	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JVX94_02540	COG0735	belongs to the Fur family
JVX94_02550	COG1940	carbohydrate kinase activity
JVX94_02555	COG5663	Belongs to the 5'(3')-deoxyribonucleotidase family
JVX94_02560	COG4709	membrane
JVX94_02565	COG0821	Converts 2C-methyl-D-erythritol 2,4-cyclodiphosphate (ME-2,4cPP) into 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate
JVX94_02570	COG1388	LysM domain
JVX94_02575	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JVX94_02580	COG5521	maltodextrose utilization protein MalA
JVX94_02585	COG2839	Protein conserved in bacteria
JVX94_02590	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
JVX94_02595	COG0477	Major facilitator Superfamily
JVX94_02600	COG0768	penicillin binding
JVX94_02605	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
JVX94_02610	COG0573	inorganic phosphate transmembrane transporter activity
JVX94_02615	COG0581	inorganic phosphate transmembrane transporter activity
JVX94_02620	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
JVX94_02625	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
JVX94_02630	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
JVX94_02640	COG0267	Belongs to the bacterial ribosomal protein bL33 family
JVX94_02645	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
JVX94_02655	COG0457	Tetratricopeptide repeat
JVX94_02655	COG0705	Rhomboid family
JVX94_02660	COG4483	Protein conserved in bacteria
JVX94_02665	COG1940	carbohydrate kinase activity
JVX94_02670	COG1368	sulfuric ester hydrolase activity
JVX94_02675	COG2866	Carboxypeptidase
JVX94_02680	COG2814	Major facilitator Superfamily
JVX94_02685	COG0011	TIGRFAM Protein of
JVX94_02695	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JVX94_02705	COG1393	Belongs to the ArsC family
JVX94_02715	COG1366	Belongs to the anti-sigma-factor antagonist family
JVX94_02720	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
JVX94_02725	COG1459	type II secretion system
JVX94_02730	COG4537	Required for transformation and DNA binding
JVX94_02735	COG4970	Tfp pilus assembly protein FimT
JVX94_02765	COG0681	Belongs to the peptidase S26 family
JVX94_02790	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
JVX94_02795	COG0404	The glycine cleavage system catalyzes the degradation of glycine
JVX94_02800	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
JVX94_02805	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
JVX94_02810	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JVX94_02815	COG0095	Lipoate-protein ligase
JVX94_02820	COG1321	iron dependent repressor
JVX94_02825	COG1752	Esterase of the alpha-beta hydrolase superfamily
JVX94_02835	COG3872	metal-dependent enzyme
JVX94_02845	COG0757	Catalyzes a trans-dehydration via an enolate intermediate
JVX94_02850	COG0006	proline dipeptidase activity
JVX94_02855	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
JVX94_02865	COG3854	ATPases associated with a variety of cellular activities
JVX94_02905	COG0511	ligase activity, forming carbon-carbon bonds
JVX94_02910	COG0439	Biotin carboxylase
JVX94_02915	COG1302	Protein conserved in bacteria
JVX94_02920	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JVX94_02925	COG0190	Catalyzes the oxidation of 5,10- methylenetetrahydrofolate to 5,10-methenyltetrahydrofolate and then the hydrolysis of 5,10-methenyltetrahydrofolate to 10- formyltetrahydrofolate
JVX94_02930	COG1570	exodeoxyribonuclease VII activity
JVX94_02935	COG1722	exodeoxyribonuclease VII activity
JVX94_02940	COG0142	geranyltranstransferase activity
JVX94_02945	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
JVX94_02950	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
JVX94_02955	COG1438	arginine binding
JVX94_02960	COG0497	DNA recombination
JVX94_02965	COG0750	zinc metalloprotease
JVX94_02970	COG0745	RESPONSE REGULATOR receiver
JVX94_02975	COG0457	Tetratricopeptide repeat
JVX94_02980	COG0584	glycerophosphoryl diester phosphodiesterase
JVX94_02990	COG3829	transcription factor binding
JVX94_02990	COG3290	protein histidine kinase activity
JVX94_02995	COG0280	phosphate acetyltransferase
JVX94_03000	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
JVX94_03005	COG3426	butyrate kinase activity
JVX94_03010	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JVX94_03015	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
JVX94_03020	COG0022	dehydrogenase e1 component
JVX94_03025	COG0508	dehydrogenase complex catalyzes the overall conversion of
JVX94_03035	COG1597	lipid kinase activity
JVX94_03045	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JVX94_03050	COG0765	amino acid transport
JVX94_03055	COG1126	abc transporter atp-binding protein
JVX94_03060	COG4129	membrane
JVX94_03065	COG1376	ErfK ybiS ycfS ynhG family protein
JVX94_03075	COG0346	lactoylglutathione lyase activity
JVX94_03080	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
JVX94_03085	COG2195	Cleaves the N-terminal amino acid of tripeptides
JVX94_03095	COG0706	membrane insertase activity
JVX94_03110	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
JVX94_03115	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
JVX94_03125	COG1028	Short-chain dehydrogenase reductase Sdr
JVX94_03130	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JVX94_03135	COG1447	Phosphotransferase system cellobiose-specific component IIA
JVX94_03140	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JVX94_03145	COG2723	6-phospho-beta-galactosidase activity
JVX94_03150	COG2188	Transcriptional regulator
JVX94_03155	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
JVX94_03165	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JVX94_03170	COG0596	Alpha beta hydrolase
JVX94_03175	COG1902	pentaerythritol trinitrate reductase activity
JVX94_03180	COG4187	Peptidase family M20/M25/M40
JVX94_03190	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JVX94_03195	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JVX94_03200	COG0300	oxidoreductase activity
JVX94_03205	COG0446	pyridine nucleotide-disulphide oxidoreductase
JVX94_03210	COG1072	(Pantothenic acid kinase))
JVX94_03215	COG2211	Major facilitator Superfamily
JVX94_03225	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
JVX94_03235	COG0456	acetyltransferase
JVX94_03240	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
JVX94_03240	COG0456	acetyltransferase
JVX94_03245	COG4918	Iron-sulphur cluster biosynthesis
JVX94_03255	COG0457	Tetratricopeptide repeat
JVX94_03260	COG1073	alpha beta
JVX94_03270	COG0667	Aldo Keto reductase
JVX94_03275	COG0494	nUDIX hydrolase
JVX94_03280	COG1379	DNA repair
JVX94_03285	COG2153	protein acetylation
JVX94_03295	COG1404	Belongs to the peptidase S8 family
JVX94_03300	COG1300	Membrane
JVX94_03305	COG0735	belongs to the Fur family
JVX94_03315	COG4974	Belongs to the 'phage' integrase family
JVX94_03320	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
JVX94_03325	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
JVX94_03330	COG1686	Belongs to the peptidase S11 family
JVX94_03340	COG2172	sigma factor antagonist activity
JVX94_03345	COG1191	sigma factor activity
JVX94_03365	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JVX94_03380	COG0697	spore germination
JVX94_03385	COG0019	diaminopimelate decarboxylase activity
JVX94_03390	COG4086	secreted protein
JVX94_03395	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
JVX94_03400	COG2814	Major facilitator Superfamily
JVX94_03405	COG1309	transcriptional regulator
JVX94_03420	COG0307	riboflavin synthase, alpha
JVX94_03425	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
JVX94_03425	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
JVX94_03430	COG0054	6,7-dimethyl-8-ribityllumazine synthase activity
JVX94_03435	COG0456	acetyltransferase
JVX94_03440	COG1547	Domain of unknown function (DUF309)
JVX94_03450	COG1354	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves
JVX94_03455	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
JVX94_03465	COG1686	Belongs to the peptidase S11 family
JVX94_03470	COG2715	membrane protein required for spore maturation
JVX94_03475	COG0700	Nucleoside recognition
JVX94_03480	COG1187	pseudouridine synthase activity
JVX94_03485	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JVX94_03490	COG1333	cytochrome c biogenesis protein
JVX94_03495	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JVX94_03500	COG0745	RESPONSE REGULATOR receiver
JVX94_03505	COG5002	protein histidine kinase activity
JVX94_03510	COG1595	DNA-templated transcription, initiation
JVX94_03520	COG1388	LysM domain
JVX94_03520	COG0791	NLP P60 protein
JVX94_03525	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JVX94_03530	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
JVX94_03535	COG1141	Ferredoxin
JVX94_03540	COG4955	Helix-turn-helix domain
JVX94_03545	COG0514	ATP-dependent DNA helicase (RecQ)
JVX94_03550	COG1266	CAAX protease self-immunity
JVX94_03555	COG1388	LysM domain
JVX94_03565	COG1408	metallophosphoesterase
JVX94_03570	COG4862	establishment of competence for transformation
JVX94_03575	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
JVX94_03580	COG0492	ferredoxin-NADP+ reductase activity
JVX94_03585	COG2339	peptidase activity
JVX94_03590	COG3409	Peptidoglycan-binding domain 1 protein
JVX94_03590	COG3773	Cell wall hydrolase
JVX94_03595	COG2959	enzyme of heme biosynthesis
JVX94_03600	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
JVX94_03610	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
JVX94_03615	COG0539	negative regulation of cytoplasmic translation
JVX94_03620	COG1304	FMN binding
JVX94_03645	COG1160	GTP binding
JVX94_03650	COG0240	glycerol-3-phosphate dehydrogenase [NAD(P)+] activity
JVX94_03665	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
JVX94_03670	COG0776	regulation of translation
JVX94_03675	COG0302	gtp cyclohydrolase
JVX94_03685	COG0142	geranyltranstransferase activity
JVX94_03690	COG2226	methyltransferase
JVX94_03695	COG0142	geranyltranstransferase activity
JVX94_03700	COG0105	UTP biosynthetic process
JVX94_03705	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
JVX94_03710	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
JVX94_03715	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
JVX94_03720	COG4401	Chorismate mutase type I
JVX94_03735	COG0134	indole-3-glycerol-phosphate synthase activity
JVX94_03740	COG0135	phosphoribosylanthranilate isomerase activity
JVX94_03745	COG0133	tryptophan synthase activity
JVX94_03750	COG0159	tryptophan synthase activity
JVX94_03755	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
JVX94_03760	COG0287	Prephenate dehydrogenase
JVX94_03765	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
JVX94_03770	COG0457	Tetratricopeptide repeat
JVX94_03775	COG5582	Belongs to the UPF0302 family
JVX94_03785	COG0723	plastoquinol--plastocyanin reductase activity
JVX94_03790	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
JVX94_03795	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
JVX94_03795	COG2010	Cytochrome c
JVX94_03800	COG4347	Protein of unknown function (DUF1405)
JVX94_03810	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JVX94_03815	COG1694	Mazg nucleotide pyrophosphohydrolase
JVX94_03820	COG0289	4-hydroxy-tetrahydrodipicolinate reductase
JVX94_03825	COG1803	Methylglyoxal synthase
JVX94_03830	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
JVX94_03835	COG0438	transferase activity, transferring glycosyl groups
JVX94_03840	COG0617	tRNA 3'-terminal CCA addition
JVX94_03850	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
JVX94_03855	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
JVX94_03860	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
JVX94_03865	COG1199	ATP-dependent helicase activity
JVX94_03865	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JVX94_03875	COG5353	protein conserved in bacteria
JVX94_03880	COG0017	Asparaginyl-tRNA synthetase
JVX94_03885	COG3935	DnaD domain protein
JVX94_03890	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
JVX94_03900	COG4499	WXG100 protein secretion system (Wss), protein YukC
JVX94_03900	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JVX94_03905	COG3331	DNA recombination
JVX94_03935	COG0071	Belongs to the small heat shock protein (HSP20) family
JVX94_03940	COG2190	(PTS) system
JVX94_03945	COG1902	pentaerythritol trinitrate reductase activity
JVX94_03950	COG1205	dead DEAH box helicase
JVX94_03950	COG1111	helicase
JVX94_03955	COG3359	exonuclease
JVX94_03965	COG4474	Belongs to the UPF0398 family
JVX94_03970	COG3599	regulation of cell shape
JVX94_03980	COG0116	Belongs to the methyltransferase superfamily
JVX94_03990	COG1199	ATP-dependent helicase activity
JVX94_03995	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
JVX94_04000	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
JVX94_04005	COG2233	PERMEase
JVX94_04010	COG0726	polysaccharide deacetylase
JVX94_04015	COG3424	synthase
JVX94_04020	COG1755	Isoprenylcysteine carboxyl methyltransferase
JVX94_04030	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
JVX94_04040	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JVX94_04050	COG0328	RNA-DNA hybrid ribonuclease activity
JVX94_04055	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
JVX94_04060	COG0328	RNA-DNA hybrid ribonuclease activity
JVX94_04075	COG1278	Cold shock
JVX94_04085	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
JVX94_04090	COG1897	L-methionine biosynthetic process from homoserine via O-succinyl-L-homoserine and cystathionine
JVX94_04095	COG2759	Belongs to the formate--tetrahydrofolate ligase family
JVX94_04100	COG0386	Belongs to the glutathione peroxidase family
JVX94_04105	COG1418	mRNA catabolic process
JVX94_04110	COG1413	lyase activity
JVX94_04115	COG0129	dihydroxy-acid dehydratase activity
JVX94_04125	COG2136	Putative SAM-dependent methyltransferase
JVX94_04125	COG2521	methyltransferase
JVX94_04135	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
JVX94_04140	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
JVX94_04145	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
JVX94_04150	COG0204	Acyl-transferase
JVX94_04155	COG1272	protein, Hemolysin III
JVX94_04160	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
JVX94_04165	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
JVX94_04180	COG1999	signal sequence binding
JVX94_04185	COG2755	lipolytic protein G-D-S-L family
JVX94_04190	COG4698	Protein conserved in bacteria
JVX94_04210	COG1846	Transcriptional regulator
JVX94_04215	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JVX94_04220	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JVX94_04225	COG1086	Polysaccharide biosynthesis protein
JVX94_04235	COG4641	Protein conserved in bacteria
JVX94_04250	COG0463	Glycosyl transferase, family 2
JVX94_04255	COG3829	transcription factor binding
JVX94_04260	COG1509	lysine 2,3-aminomutase activity
JVX94_04270	COG4479	Belongs to the UPF0346 family
JVX94_04285	COG0671	phosphoesterase, PA-phosphatase related
JVX94_04295	COG0813	purine-nucleoside phosphorylase activity
JVX94_04300	COG1876	peptidase activity
JVX94_04310	COG2226	methyltransferase
JVX94_04315	COG3409	Peptidoglycan-binding domain 1 protein
JVX94_04315	COG0793	Belongs to the peptidase S41A family
JVX94_04320	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
JVX94_04325	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JVX94_04335	COG0778	Nitroreductase
JVX94_04340	COG1733	regulation of RNA biosynthetic process
JVX94_04355	COG2962	Rard protein
JVX94_04365	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
JVX94_04370	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
JVX94_04380	COG0534	Mate efflux family protein
JVX94_04385	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
JVX94_04390	COG0791	NLP P60 protein
JVX94_04390	COG1388	LysM domain
JVX94_04395	COG2032	superoxide dismutase activity
JVX94_04400	COG0714	Associated with various cellular activities
JVX94_04405	COG4548	von Willebrand factor, type A
JVX94_04410	COG0567	Dehydrogenase, E1 component
JVX94_04415	COG0508	dehydrogenase complex catalyzes the overall conversion of
JVX94_04420	COG0385	Bile acid
JVX94_04425	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
JVX94_04430	COG1657	PFAM Prenyltransferase squalene oxidase
JVX94_04435	COG1012	belongs to the aldehyde dehydrogenase family
JVX94_04460	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
JVX94_04470	COG0514	ATP-dependent DNA helicase (RecQ)
JVX94_04475	COG1388	LysM domain
JVX94_04475	COG3584	3D domain protein
JVX94_04485	COG2322	membrane
JVX94_04490	COG0372	Belongs to the citrate synthase family
JVX94_04495	COG2079	MmgE PrpD family protein
JVX94_04500	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
JVX94_04505	COG0741	lytic transglycosylase activity
JVX94_04510	COG0531	amino acid
JVX94_04515	COG0640	Transcriptional regulator
JVX94_04525	COG2378	regulation of single-species biofilm formation
JVX94_04530	COG3708	Transcriptional regulator
JVX94_04535	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JVX94_04540	COG1309	transcriptional regulator
JVX94_04560	COG1994	Peptidase M50
JVX94_04565	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JVX94_04570	COG2211	Major facilitator Superfamily
JVX94_04580	COG1940	carbohydrate kinase activity
JVX94_04585	COG2115	Belongs to the xylose isomerase family
JVX94_04590	COG1070	Carbohydrate kinase
JVX94_04600	COG0243	molybdopterin cofactor binding
JVX94_04615	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
JVX94_04620	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
JVX94_04625	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
JVX94_04630	COG0454	-acetyltransferase
JVX94_04635	COG0789	Transcriptional regulator
JVX94_04635	COG4978	Transcriptional regulator
JVX94_04640	COG1132	(ABC) transporter
JVX94_04650	COG0583	DNA-binding transcription factor activity
JVX94_04655	COG0069	glutamate synthase activity
JVX94_04655	COG0070	glutamate synthase
JVX94_04655	COG0067	glutamate synthase
JVX94_04660	COG0493	'glutamate synthase
JVX94_04665	COG2223	nitrite transmembrane transporter activity
JVX94_04670	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JVX94_04675	COG0243	molybdopterin cofactor binding
JVX94_04680	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JVX94_04685	COG2146	nitrite reductase [NAD(P)H] activity
JVX94_04690	COG2323	membrane
JVX94_04695	COG4677	pectinesterase activity
JVX94_04700	COG2027	D-alanyl-D-alanine carboxypeptidase
JVX94_04705	COG0534	Mate efflux family protein
JVX94_04720	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JVX94_04730	COG1587	Uroporphyrinogen-III synthase
JVX94_04735	COG0586	Pfam SNARE associated Golgi protein
JVX94_04740	COG1210	Utp--glucose-1-phosphate uridylyltransferase
JVX94_04745	COG2246	polysaccharide biosynthetic process
JVX94_04750	COG0166	Belongs to the GPI family
JVX94_04775	COG0247	lactate metabolic process
JVX94_04780	COG0277	FAD linked oxidase domain protein
JVX94_04785	COG3835	regulator
JVX94_04795	COG1349	DNA-binding transcription factor activity
JVX94_04800	COG2365	Tyrosine phosphatase family
JVX94_04805	COG1649	PFAM Uncharacterised BCR, COG1649
JVX94_04810	COG1960	acyl-CoA dehydrogenase activity
JVX94_04815	COG0318	PFAM AMP-dependent synthetase and ligase
JVX94_04820	COG0439	Biotin carboxylase
JVX94_04825	COG0511	ligase activity, forming carbon-carbon bonds
JVX94_04830	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
JVX94_04835	COG1024	Enoyl-CoA hydratase
JVX94_04840	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
JVX94_04845	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JVX94_04850	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JVX94_04855	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
JVX94_04885	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JVX94_04895	COG1105	Belongs to the carbohydrate kinase PfkB family
JVX94_04900	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JVX94_04900	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JVX94_04900	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JVX94_04905	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JVX94_04905	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JVX94_04905	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JVX94_04915	COG2814	Major facilitator Superfamily
JVX94_04920	COG1846	Transcriptional regulator
JVX94_04960	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JVX94_04965	COG0456	acetyltransferase
JVX94_04975	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JVX94_04990	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
JVX94_04995	COG1609	Transcriptional regulator
JVX94_05000	COG1653	transport
JVX94_05005	COG1175	transmembrane transport
JVX94_05010	COG0395	ABC-type sugar transport system, permease component
JVX94_05015	COG1486	melibiose metabolic process
JVX94_05020	COG1012	belongs to the aldehyde dehydrogenase family
JVX94_05025	COG3507	Belongs to the glycosyl hydrolase 43 family
JVX94_05035	COG0745	RESPONSE REGULATOR receiver
JVX94_05040	COG2205	protein histidine kinase activity
JVX94_05050	COG0789	Transcriptional regulator
JVX94_05055	COG0657	acetylesterase activity
JVX94_05060	COG0583	DNA-binding transcription factor activity
JVX94_05075	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
JVX94_05115	COG0251	oxidation-reduction process
JVX94_05120	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JVX94_05125	COG2409	Drug exporters of the RND superfamily
JVX94_05130	COG4585	Histidine kinase
JVX94_05135	COG2197	response regulator
JVX94_05145	COG1733	regulation of RNA biosynthetic process
JVX94_05150	COG2249	NAD(P)H dehydrogenase (quinone) activity
JVX94_05170	COG1904	glucuronate isomerase
JVX94_05180	COG0673	inositol 2-dehydrogenase activity
JVX94_05185	COG1802	Transcriptional regulator
JVX94_05190	COG1312	Catalyzes the dehydration of D-mannonate
JVX94_05195	COG1028	Short-chain dehydrogenase reductase Sdr
JVX94_05205	COG0738	Major facilitator superfamily
JVX94_05220	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
JVX94_05225	COG0187	DNA topoisomerase II activity
JVX94_05230	COG1832	CoA-binding protein
JVX94_05235	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
JVX94_05240	COG4841	protein insertion into membrane
JVX94_05250	COG0824	Thioesterase
JVX94_05270	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JVX94_05275	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
JVX94_05290	COG0071	Belongs to the small heat shock protein (HSP20) family
JVX94_05300	COG4846	Membrane protein involved in cytochrome C biogenesis
JVX94_05305	COG0785	Cytochrome C biogenesis protein
JVX94_05315	COG3763	UPF0154 protein
JVX94_05325	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
JVX94_05330	COG4224	UPF0291 protein
JVX94_05335	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
JVX94_05340	COG1388	LysM domain
JVX94_05345	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
JVX94_05365	COG1366	Belongs to the anti-sigma-factor antagonist family
JVX94_05370	COG3209	COG3209 Rhs family protein
JVX94_05375	COG3591	Belongs to the peptidase S1B family
JVX94_05380	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
JVX94_05380	COG2124	cytochrome p450
JVX94_05385	COG1309	transcriptional regulator
JVX94_05390	COG2323	membrane
JVX94_05410	COG1556	Lactate utilization protein
JVX94_05415	COG1139	Iron-sulfur cluster binding protein
JVX94_05420	COG0247	lactate metabolic process
JVX94_05425	COG0702	epimerase
JVX94_05430	COG1959	2 iron, 2 sulfur cluster binding
JVX94_05435	COG0346	lactoylglutathione lyase activity
JVX94_05440	COG4876	unkown
JVX94_05445	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
JVX94_05450	COG1793	dna ligase
JVX94_05450	COG3285	dna ligase
JVX94_05455	COG3619	membrane
JVX94_05465	COG0457	Tetratricopeptide repeat
JVX94_05470	COG5646	InterPro IPR014922
JVX94_05495	COG5444	nuclease activity
JVX94_05515	COG5444	nuclease activity
JVX94_05520	COG0457	Tetratricopeptide repeat
JVX94_05545	COG4282	regulation of fungal-type cell wall biogenesis
JVX94_05560	COG0860	N-Acetylmuramoyl-L-alanine amidase
JVX94_05565	COG4824	toxin secretion phage lysis holin
JVX94_05590	COG1705	Flagellar rod assembly protein muramidase FlgJ
JVX94_05665	COG1802	Transcriptional regulator
JVX94_05665	COG4626	Terminase
JVX94_05710	COG1595	DNA-templated transcription, initiation
JVX94_05815	COG4974	Belongs to the 'phage' integrase family
JVX94_05820	COG0174	glutamine synthetase
JVX94_05825	COG0789	Transcriptional regulator
JVX94_05830	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
JVX94_05835	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
JVX94_05840	COG0464	growth
JVX94_05845	COG0860	N-Acetylmuramoyl-L-alanine amidase
JVX94_05850	COG4112	unkown
JVX94_05855	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JVX94_05860	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JVX94_05865	COG1780	Probably involved in ribonucleotide reductase function
JVX94_05880	COG1923	regulation of RNA biosynthetic process
JVX94_05885	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
JVX94_05910	COG2076	Multidrug Resistance protein
JVX94_05915	COG1764	response to oxidative stress
JVX94_05920	COG4195	phage-related replication protein
JVX94_05925	COG1404	Belongs to the peptidase S8 family
JVX94_05930	COG0457	Tetratricopeptide repeat
JVX94_05935	COG4195	phage-related replication protein
JVX94_05940	COG1329	Transcriptional regulator
JVX94_05955	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
JVX94_05960	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
JVX94_05970	COG4550	Control of competence regulator ComK, YlbF/YmcA
JVX94_05975	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
JVX94_05980	COG0156	8-amino-7-oxononanoate synthase activity
JVX94_05985	COG1063	alcohol dehydrogenase
JVX94_05990	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JVX94_05995	COG2359	stage V sporulation protein S
JVX94_06000	COG1692	metallophosphoesterase
JVX94_06005	COG1418	mRNA catabolic process
JVX94_06010	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JVX94_06015	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
JVX94_06020	COG1546	Belongs to the CinA family
JVX94_06020	COG1058	Belongs to the CinA family
JVX94_06025	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
JVX94_06030	COG1426	Protein conserved in bacteria
JVX94_06045	COG0300	oxidoreductase activity
JVX94_06050	COG1033	growth of symbiont in host cell
JVX94_06050	COG2409	Drug exporters of the RND superfamily
JVX94_06060	COG0612	Peptidase, M16
JVX94_06065	COG0612	Peptidase, M16
JVX94_06070	COG2409	Drug exporters of the RND superfamily
JVX94_06070	COG1033	growth of symbiont in host cell
JVX94_06075	COG2814	Major facilitator Superfamily
JVX94_06080	COG2188	Transcriptional regulator
JVX94_06085	COG4980	gas vesicle protein
JVX94_06085	COG1674	ftsk spoiiie
JVX94_06095	COG0740	serine-type endopeptidase activity
JVX94_06100	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
JVX94_06110	COG0527	aspartate kinase activity
JVX94_06115	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
JVX94_06120	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
JVX94_06125	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JVX94_06130	COG1873	PFAM PRC-barrel domain
JVX94_06135	COG0367	asparagine synthase
JVX94_06180	COG1260	myo-inositol-1-phosphate synthase
JVX94_06185	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
JVX94_06190	COG1028	Short-chain dehydrogenase reductase Sdr
JVX94_06195	COG1028	Short-chain dehydrogenase reductase Sdr
JVX94_06210	COG2255	four-way junction helicase activity
JVX94_06220	COG1812	S-adenosylmethionine synthetase (AdoMet synthetase)
JVX94_06255	COG1132	(ABC) transporter
JVX94_06260	COG1132	(ABC) transporter
JVX94_06270	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JVX94_06275	COG0612	Peptidase, M16
JVX94_06280	COG0726	polysaccharide deacetylase
JVX94_06285	COG1185	polyribonucleotide nucleotidyltransferase activity
JVX94_06290	COG0184	Forms an intersubunit bridge (bridge B4) with the 23S rRNA of the 50S subunit in the ribosome
JVX94_06295	COG0196	riboflavin kinase activity
JVX94_06300	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
JVX94_06305	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
JVX94_06310	COG1550	Protein conserved in bacteria
JVX94_06315	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
JVX94_06320	COG1358	cellular component organization or biogenesis
JVX94_06325	COG2740	Nucleic-acid-binding protein implicated in transcription termination
JVX94_06330	COG0195	Participates in both transcription termination and antitermination
JVX94_06335	COG0779	Required for maturation of 30S ribosomal subunits
JVX94_06385	COG1131	(ABC) transporter
JVX94_06420	COG2176	DNA-directed DNA polymerase activity
JVX94_06425	COG0442	prolyl-tRNA aminoacylation
JVX94_06430	COG0750	zinc metalloprotease
JVX94_06435	COG0743	1-deoxy-D-xylulose-5-phosphate reductoisomerase activity
JVX94_06440	COG4589	Belongs to the CDS family
JVX94_06445	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
JVX94_06450	COG0233	cytoplasmic translational termination
JVX94_06455	COG0528	UMP kinase activity
JVX94_06460	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
JVX94_06475	COG1191	sigma factor activity
JVX94_06480	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
JVX94_06485	COG1776	CheC inhibitor of MCP methylation
JVX94_06490	COG0835	chemotaxis
JVX94_06495	COG0643	Histidine kinase
JVX94_06495	COG2198	Histidine kinase
JVX94_06500	COG2201	protein-glutamate methylesterase activity
JVX94_06505	COG0455	bacterial-type flagellum organization
JVX94_06510	COG1419	protein localization to endoplasmic reticulum
JVX94_06515	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
JVX94_06520	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
JVX94_06525	COG1684	flagellar biosynthetic protein fliR
JVX94_06530	COG1987	bacterial-type flagellum assembly
JVX94_06535	COG1338	Plays a role in the flagellum-specific transport system
JVX94_06540	COG3190	flagellar
JVX94_06545	COG2201	protein-glutamate methylesterase activity
JVX94_06550	COG1776	CheC inhibitor of MCP methylation
JVX94_06550	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JVX94_06555	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JVX94_06560	COG1580	Controls the rotational direction of flagella during chemotaxis
JVX94_06565	COG1582	Flagellar protein (FlbD)
JVX94_06570	COG4786	Flagellar basal body rod
JVX94_06575	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
JVX94_06580	COG3144	bacterial-type flagellum assembly
JVX94_06585	COG3334	PFAM MgtE intracellular
JVX94_06590	COG2882	bacterial-type flagellum organization
JVX94_06595	COG1157	protein secretion by the type III secretion system
JVX94_06600	COG1317	bacterial-type flagellum organization
JVX94_06605	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JVX94_06610	COG1766	The M ring may be actively involved in energy transduction
JVX94_06615	COG1677	Flagellar hook-basal body complex protein FliE
JVX94_06620	COG1558	bacterial-type flagellum-dependent cell motility
JVX94_06625	COG1815	bacterial-type flagellum-dependent cell motility
JVX94_06630	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
JVX94_06635	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
JVX94_06640	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
JVX94_06645	COG4974	Belongs to the 'phage' integrase family
JVX94_06650	COG1206	Catalyzes the folate-dependent formation of 5-methyl- uridine at position 54 (M-5-U54) in all tRNAs
JVX94_06655	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
JVX94_06660	COG0758	DNA mediated transformation
JVX94_06665	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
JVX94_06670	COG0045	succinate-CoA ligase (ADP-forming) activity
JVX94_06675	COG2257	FlhB HrpN YscU SpaS Family
JVX94_06685	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
JVX94_06690	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
JVX94_06695	COG0335	large ribosomal subunit rRNA binding
JVX94_06700	COG0336	Belongs to the RNA methyltransferase TrmD family
JVX94_06705	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
JVX94_06715	COG1837	Belongs to the UPF0109 family
JVX94_06720	COG0228	four-way junction DNA binding
JVX94_06725	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
JVX94_06730	COG2739	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
JVX94_06735	COG0552	protein localization to endoplasmic reticulum
JVX94_06740	COG1196	nuclear chromosome segregation
JVX94_06750	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JVX94_06755	COG1028	Short-chain dehydrogenase reductase Sdr
JVX94_06760	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
JVX94_06765	COG0416	fatty acid biosynthetic process
JVX94_06770	COG1349	DNA-binding transcription factor activity
JVX94_06775	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
JVX94_06780	COG1760	l-serine dehydratase
JVX94_06785	COG1760	l-serine dehydratase
JVX94_06790	COG1461	Dihydroxyacetone kinase
JVX94_06795	COG1302	Protein conserved in bacteria
JVX94_06800	COG0227	Belongs to the bacterial ribosomal protein bL28 family
JVX94_06810	COG1564	THIamine pyrophosphokinase
JVX94_06815	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
JVX94_06820	COG1162	GTPase activity
JVX94_06825	COG2815	serine threonine protein kinase
JVX94_06825	COG0515	serine threonine protein kinase
JVX94_06830	COG0631	protein serine/threonine phosphatase activity
JVX94_06835	COG0820	rRNA (adenine-C2-)-methyltransferase activity
JVX94_06840	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
JVX94_06840	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JVX94_06845	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
JVX94_06850	COG0242	peptide deformylase activity
JVX94_06855	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
JVX94_06860	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
JVX94_06865	COG1758	RNA polymerase activity
JVX94_06870	COG0194	GDP metabolic process
JVX94_06875	COG2052	Domain of unknown function (DUF370)
JVX94_06880	COG1561	YicC-like family, N-terminal region
JVX94_06885	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
JVX94_06895	COG1648	precorrin-2 dehydrogenase activity
JVX94_06900	COG2138	Cobalamin (vitamin B12) biosynthesis CbiX protein
JVX94_06905	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
JVX94_06910	COG0529	Catalyzes the synthesis of activated sulfate
JVX94_06915	COG2046	Belongs to the sulfate adenylyltransferase family
JVX94_06920	COG0306	phosphate transporter
JVX94_06925	COG0175	sulfate reduction
JVX94_06935	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
JVX94_06940	COG0284	orotidine-5'-phosphate decarboxylase activity
JVX94_06945	COG0167	dihydroorotate dehydrogenase activity
JVX94_06950	COG0543	2 iron, 2 sulfur cluster binding
JVX94_06955	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
JVX94_06960	COG0505	Belongs to the CarA family
JVX94_06965	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
JVX94_06970	COG0540	Belongs to the ATCase OTCase family
JVX94_06975	COG2233	PERMEase
JVX94_06980	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
JVX94_06985	COG0564	pseudouridine synthase activity
JVX94_06990	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
JVX94_06995	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
JVX94_07000	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
JVX94_07005	COG3599	regulation of cell shape
JVX94_07010	COG2302	S4 RNA-binding domain
JVX94_07015	COG0762	integral membrane protein
JVX94_07020	COG1799	cell septum assembly
JVX94_07025	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
JVX94_07030	COG1496	oxidoreductase activity
JVX94_07035	COG1873	PFAM PRC-barrel domain
JVX94_07040	COG1119	ATPase activity
JVX94_07050	COG3732	PTS system glucitol sorbitol-specific
JVX94_07055	COG3730	PTS system glucitol sorbitol-specific
JVX94_07070	COG2390	Transcriptional regulator
JVX94_07075	COG1191	sigma factor activity
JVX94_07080	COG1191	sigma factor activity
JVX94_07090	COG1404	Belongs to the peptidase S8 family
JVX94_07090	COG4412	M6 family metalloprotease domain protein
JVX94_07095	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
JVX94_07100	COG0849	cell division
JVX94_07105	COG3856	small basic protein
JVX94_07110	COG3879	Bacterial protein of unknown function (DUF881)
JVX94_07115	COG3879	Bacterial protein of unknown function (DUF881)
JVX94_07120	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
JVX94_07125	COG0812	UDP-N-acetylmuramate dehydrogenase activity
JVX94_07130	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
JVX94_07135	COG0772	Belongs to the SEDS family
JVX94_07140	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
JVX94_07145	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
JVX94_07150	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
JVX94_07155	COG0768	penicillin binding
JVX94_07160	COG0768	penicillin binding
JVX94_07165	COG4839	cell division protein FtsL
JVX94_07170	COG0275	rRNA processing
JVX94_07175	COG2001	Belongs to the MraZ family
JVX94_07180	COG4365	Involved in bacillithiol (BSH) biosynthesis. May catalyze the last step of the pathway, the addition of cysteine to glucosamine malate (GlcN-Mal) to generate BSH
JVX94_07185	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JVX94_07190	COG0454	-acetyltransferase
JVX94_07200	COG0333	Belongs to the bacterial ribosomal protein bL32 family
JVX94_07205	COG1399	metal-binding, possibly nucleic acid-binding protein
JVX94_07215	COG3480	Lon protease (S16) C-terminal proteolytic domain
JVX94_07220	COG1752	Esterase of the alpha-beta hydrolase superfamily
JVX94_07225	COG3314	Sporulation integral membrane protein YlbJ
JVX94_07230	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
JVX94_07235	COG0742	ribosomal rna small subunit methyltransferase
JVX94_07240	COG4471	UPF0298 protein
JVX94_07245	COG3679	Belongs to the UPF0342 family
JVX94_07265	COG2340	Cysteine-rich secretory protein family
JVX94_07270	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
JVX94_07280	COG3336	cytochrome c oxidase
JVX94_07285	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
JVX94_07290	COG1845	cytochrome c oxidase, subunit III
JVX94_07295	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
JVX94_07300	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
JVX94_07300	COG2010	Cytochrome c
JVX94_07305	COG0109	protoheme IX farnesyltransferase activity
JVX94_07310	COG1612	heme a metabolic process
JVX94_07315	COG0415	Belongs to the DNA photolyase family
JVX94_07320	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
JVX94_07325	COG0772	Belongs to the SEDS family
JVX94_07330	COG4838	Belongs to the UPF0358 family
JVX94_07335	COG2066	Belongs to the glutaminase family
JVX94_07340	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
JVX94_07345	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
JVX94_07355	COG4896	Protein conserved in bacteria
JVX94_07365	COG1217	gtp-binding protein TYPA
JVX94_07385	COG1595	DNA-templated transcription, initiation
JVX94_07400	COG0483	inositol monophosphate 1-phosphatase activity
JVX94_07410	COG4493	Belongs to the UPF0637 family
JVX94_07415	COG4476	Belongs to the UPF0223 family
JVX94_07420	COG1982	Orn Lys Arg decarboxylase major
JVX94_07430	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JVX94_07435	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JVX94_07440	COG0508	dehydrogenase complex catalyzes the overall conversion of
JVX94_07445	COG0022	dehydrogenase e1 component
JVX94_07450	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
JVX94_07465	COG0242	peptide deformylase activity
JVX94_07470	COG0561	phosphatase activity
JVX94_07475	COG5503	Protein of unknown function (DUF1447)
JVX94_07480	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
JVX94_07485	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
JVX94_07490	COG0569	domain protein
JVX94_07495	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
JVX94_07495	COG2105	PFAM AIG2 family protein
JVX94_07500	COG3852	Histidine kinase
JVX94_07505	COG2002	toxin-antitoxin pair type II binding
JVX94_07510	COG1077	Cell shape determining protein MreB Mrl
JVX94_07520	COG2309	aminopeptidase activity
JVX94_07525	COG0488	(ABC) transporter
JVX94_07535	COG0681	Belongs to the peptidase S26 family
JVX94_07540	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JVX94_07540	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JVX94_07540	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JVX94_07545	COG1105	Belongs to the carbohydrate kinase PfkB family
JVX94_07550	COG1349	DNA-binding transcription factor activity
JVX94_07555	COG0577	efflux transmembrane transporter activity
JVX94_07560	COG1136	(ABC) transporter
JVX94_07565	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
JVX94_07580	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
JVX94_07585	COG0314	molybdopterin synthase activity
JVX94_07590	COG1763	Mo-molybdopterin cofactor biosynthetic process
JVX94_07595	COG0303	'Molybdopterin
JVX94_07600	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JVX94_07605	COG0746	molybdenum cofactor guanylyltransferase activity
JVX94_07620	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JVX94_07625	COG0450	alkyl hydroperoxide reductase
JVX94_07630	COG0668	transmembrane transport
JVX94_07640	COG1473	amidohydrolase
JVX94_07645	COG2171	N-acyltransferase activity
JVX94_07650	COG0716	FMN binding
JVX94_07660	COG0716	FMN binding
JVX94_07665	COG0583	DNA-binding transcription factor activity
JVX94_07670	COG0517	IMP dehydrogenase activity
JVX94_07680	COG1978	Selenoprotein B, glycine betaine sarcosine D-proline reductase family
JVX94_07685	COG4703	Protein of unknown function (DUF1797)
JVX94_07690	COG3546	catalase activity
JVX94_07695	COG2200	EAL domain
JVX94_07700	COG1028	Short-chain dehydrogenase reductase Sdr
JVX94_07705	COG1408	metallophosphoesterase
JVX94_07710	COG1376	ErfK ybiS ycfS ynhG family protein
JVX94_07715	COG2814	Major facilitator Superfamily
JVX94_07725	COG0697	spore germination
JVX94_07730	COG2207	Transcriptional regulator
JVX94_07730	COG1917	Cupin 2, conserved barrel domain protein
JVX94_07745	COG0784	Response regulator, receiver
JVX94_07745	COG0835	chemotaxis
JVX94_07755	COG1714	RDD family
JVX94_07765	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
JVX94_07770	COG0436	Aminotransferase
JVX94_07775	COG4191	Histidine kinase
JVX94_07780	COG0768	penicillin binding
JVX94_07785	COG2340	Cysteine-rich secretory protein family
JVX94_07790	COG2084	Dehydrogenase
JVX94_07800	COG0840	transmembrane signaling receptor activity
JVX94_07805	COG1533	DNA photolyase activity
JVX94_07815	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
JVX94_07820	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JVX94_07825	COG1263	PTS System
JVX94_07825	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JVX94_07825	COG2190	(PTS) system
JVX94_07830	COG3711	transcriptional antiterminator
JVX94_07835	COG1609	Transcriptional regulator
JVX94_07845	COG0006	proline dipeptidase activity
JVX94_07850	COG2217	Heavy metal translocating P-type atpase
JVX94_07855	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JVX94_07860	COG2244	polysaccharide biosynthetic process
JVX94_07865	COG3773	Cell wall hydrolase
JVX94_07875	COG4873	Protein conserved in bacteria
JVX94_07880	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JVX94_07890	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
JVX94_07895	COG0602	queuosine metabolic process
JVX94_07900	COG0720	synthase
JVX94_07905	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
JVX94_07910	COG3949	Membrane
JVX94_07915	COG0542	response to heat
JVX94_07920	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
JVX94_07925	COG1360	Flagellar Motor Protein
JVX94_07930	COG1846	Transcriptional regulator
JVX94_07935	COG3852	Histidine kinase
JVX94_07945	COG1791	Catalyzes 2 different reactions between oxygene and the acireductone 1,2-dihydroxy-3-keto-5-methylthiopentene (DHK-MTPene) depending upon the metal bound in the active site. Fe-containing acireductone dioxygenase (Fe-ARD) produces formate and 2-keto-4- methylthiobutyrate (KMTB), the alpha-ketoacid precursor of methionine in the methionine recycle pathway. Ni-containing acireductone dioxygenase (Ni-ARD) produces methylthiopropionate, carbon monoxide and formate, and does not lie on the methionine recycle pathway
JVX94_07950	COG0235	Class ii aldolase
JVX94_07955	COG4359	Dephosphorylates 2-hydroxy-3-keto-5-methylthiopentenyl- 1-phosphate (HK-MTPenyl-1-P) yielding 1,2-dihydroxy-3-keto-5- methylthiopentene (DHK-MTPene)
JVX94_07960	COG1850	ribulose-bisphosphate carboxylase activity
JVX94_07965	COG0436	Aminotransferase
JVX94_07970	COG4857	Catalyzes the phosphorylation of methylthioribose into methylthioribose-1-phosphate
JVX94_07975	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
JVX94_07985	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
JVX94_07990	COG5002	protein histidine kinase activity
JVX94_07995	COG3594	Acyltransferase
JVX94_08010	COG2323	membrane
JVX94_08015	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JVX94_08020	COG0501	Belongs to the peptidase M48B family
JVX94_08040	COG1191	sigma factor activity
JVX94_08045	COG0861	Integral membrane protein TerC family
JVX94_08050	COG0586	Pfam SNARE associated Golgi protein
JVX94_08055	COG3300	MHYT domain
JVX94_08055	COG5001	Diguanylate cyclase
JVX94_08060	COG1846	Transcriptional regulator
JVX94_08075	COG0789	Transcriptional regulator
JVX94_08085	COG0583	DNA-binding transcription factor activity
JVX94_08095	COG2239	Acts as a magnesium transporter
JVX94_08105	COG3212	peptidase
JVX94_08110	COG3212	peptidase
JVX94_08115	COG5002	protein histidine kinase activity
JVX94_08115	COG3850	Histidine kinase
JVX94_08120	COG0745	RESPONSE REGULATOR receiver
JVX94_08135	COG1404	Belongs to the peptidase S8 family
JVX94_08140	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
JVX94_08145	COG0590	tRNA wobble adenosine to inosine editing
JVX94_08150	COG1764	response to oxidative stress
JVX94_08155	COG1846	Transcriptional regulator
JVX94_08160	COG1764	response to oxidative stress
JVX94_08170	COG0457	Tetratricopeptide repeat
JVX94_08175	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
JVX94_08180	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
JVX94_08185	COG0788	formyltetrahydrofolate deformylase activity
JVX94_08195	COG2076	Multidrug Resistance protein
JVX94_08200	COG2076	Multidrug Resistance protein
JVX94_08215	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JVX94_08230	COG1695	Transcriptional regulator
JVX94_08235	COG1607	acyl-coa hydrolase
JVX94_08240	COG1834	amidinotransferase
JVX94_08245	COG4608	Belongs to the ABC transporter superfamily
JVX94_08250	COG0791	NLP P60 protein
JVX94_08255	COG4948	Mandelate Racemase Muconate Lactonizing
JVX94_08260	COG1619	proteins homologs of microcin C7 resistance protein MccF
JVX94_08265	COG4166	transmembrane transport
JVX94_08270	COG0444	Belongs to the ABC transporter superfamily
JVX94_08275	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JVX94_08280	COG0601	transmembrane transport
JVX94_08285	COG2362	D-Aminopeptidase
JVX94_08290	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JVX94_08295	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JVX94_08300	COG0346	lactoylglutathione lyase activity
JVX94_08305	COG0531	amino acid
JVX94_08315	COG2390	Transcriptional regulator
JVX94_08320	COG1028	Short-chain dehydrogenase reductase Sdr
JVX94_08325	COG1028	Short-chain dehydrogenase reductase Sdr
JVX94_08330	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JVX94_08335	COG0508	dehydrogenase complex catalyzes the overall conversion of
JVX94_08340	COG0022	dehydrogenase e1 component
JVX94_08340	COG0508	dehydrogenase complex catalyzes the overall conversion of
JVX94_08345	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
JVX94_08350	COG1063	alcohol dehydrogenase
JVX94_08365	COG3775	system Galactitol-specific IIC component
JVX94_08375	COG1118	Part of the ABC transporter complex CysAWTP involved in sulfate thiosulfate import. Responsible for energy coupling to the transport system
JVX94_08380	COG4208	sulfate ABC transporter
JVX94_08390	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
JVX94_08395	COG0405	Gamma-glutamyltransferase
JVX94_08405	COG1392	Phosphate transport regulator
JVX94_08410	COG0306	phosphate transporter
JVX94_08430	COG5632	N-Acetylmuramoyl-L-alanine amidase
JVX94_08430	COG3409	Peptidoglycan-binding domain 1 protein
JVX94_08435	COG2856	Zn peptidase
JVX94_08440	COG4195	phage-related replication protein
JVX94_08455	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JVX94_08460	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JVX94_08465	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JVX94_08485	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
JVX94_08535	COG2807	transmembrane transport
JVX94_08540	COG0583	DNA-binding transcription factor activity
JVX94_08560	COG0583	DNA-binding transcription factor activity
JVX94_08570	COG3863	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
JVX94_08595	COG0457	Tetratricopeptide repeat
JVX94_08620	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JVX94_08630	COG0825	malonyl-CoA metabolic process
JVX94_08670	COG0626	cystathionine gamma-synthase activity
JVX94_08675	COG0626	cystathionine gamma-synthase activity
JVX94_08680	COG2382	esterase
JVX94_08685	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
JVX94_08700	COG0210	DNA helicase
JVX94_08755	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
JVX94_08760	COG0351	phosphomethylpyrimidine kinase
JVX94_08765	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JVX94_08770	COG2022	thiamine diphosphate biosynthetic process
JVX94_08775	COG2104	thiamine diphosphate biosynthetic process
JVX94_08785	COG0352	thiamine-phosphate diphosphorylase activity
JVX94_08790	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
JVX94_08795	COG0475	glutathione-regulated potassium exporter activity
JVX94_08795	COG0569	domain protein
JVX94_08800	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
JVX94_08805	COG0564	pseudouridine synthase activity
JVX94_08810	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
JVX94_08815	COG2357	RelA SpoT domain protein
JVX94_08825	COG4116	CYTH
JVX94_08830	COG0741	lytic transglycosylase activity
JVX94_08845	COG2346	COG2346, Truncated hemoglobins
JVX94_08850	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
JVX94_08860	COG1164	Oligoendopeptidase f
JVX94_08870	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JVX94_08875	COG4862	establishment of competence for transformation
JVX94_08880	COG0861	Integral membrane protein TerC family
JVX94_08885	COG1393	Belongs to the ArsC family
JVX94_08890	COG0456	acetyltransferase
JVX94_08900	COG4608	Belongs to the ABC transporter superfamily
JVX94_08905	COG0444	Belongs to the ABC transporter superfamily
JVX94_08910	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JVX94_08915	COG0601	transmembrane transport
JVX94_08920	COG4166	transmembrane transport
JVX94_08925	COG0180	Tryptophanyl-tRNA synthetase
JVX94_08935	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JVX94_08940	COG0601	transmembrane transport
JVX94_08950	COG4608	Belongs to the ABC transporter superfamily
JVX94_08955	COG0444	Belongs to the ABC transporter superfamily
JVX94_08960	COG5504	Zn-dependent protease
JVX94_08965	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JVX94_08970	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JVX94_08985	COG1744	ABC transporter substrate-binding protein PnrA-like
JVX94_08995	COG2267	carboxylic ester hydrolase activity
JVX94_09005	COG2814	Major facilitator Superfamily
JVX94_09015	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
JVX94_09020	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
JVX94_09025	COG0505	Belongs to the CarA family
JVX94_09030	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
JVX94_09035	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
JVX94_09040	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
JVX94_09045	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
JVX94_09050	COG2271	Major facilitator Superfamily
JVX94_09055	COG0277	FAD linked oxidase domain protein
JVX94_09060	COG2151	metal-sulfur cluster biosynthetic enzyme
JVX94_09065	COG1073	alpha beta
JVX94_09070	COG0561	phosphatase activity
JVX94_09090	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JVX94_09095	COG1307	EDD domain protein, DegV family
JVX94_09100	COG0840	transmembrane signaling receptor activity
JVX94_09105	COG1744	ABC transporter substrate-binding protein PnrA-like
JVX94_09110	COG2996	Protein conserved in bacteria
JVX94_09115	COG1666	GTP binding
JVX94_09120	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
JVX94_09120	COG0646	methionine synthase
JVX94_09125	COG1410	methionine synthase
JVX94_09125	COG0646	methionine synthase
JVX94_09160	COG0076	glutamate decarboxylase activity
JVX94_09190	COG2207	Transcriptional regulator
JVX94_09190	COG1917	Cupin 2, conserved barrel domain protein
JVX94_09195	COG0534	Mate efflux family protein
JVX94_09200	COG1562	ergosterol biosynthetic process
JVX94_09215	COG0367	asparagine synthase
JVX94_09230	COG0179	Fumarylacetoacetate (FAA) hydrolase
JVX94_09240	COG5337	Spore coat protein CotH
JVX94_09280	COG1403	HNH endonuclease
JVX94_09285	COG0419	ATPase involved in DNA repair
JVX94_09290	COG0420	3'-5' exonuclease activity
JVX94_09295	COG1074	ATP-dependent DNA helicase activity
JVX94_09300	COG3857	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
JVX94_09305	COG1633	Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME)
JVX94_09310	COG2259	Doxx family
JVX94_09315	COG0501	Belongs to the peptidase M48B family
JVX94_09325	COG3180	Ammonia monooxygenase
JVX94_09330	COG0681	Belongs to the peptidase S26 family
JVX94_09335	COG0398	Pfam SNARE associated Golgi protein
JVX94_09345	COG1316	TRANSCRIPTIONal
JVX94_09350	COG2732	(Barnase) inhibitor
JVX94_09355	COG2814	Major facilitator Superfamily
JVX94_09360	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JVX94_09370	COG4903	ComK protein
JVX94_09380	COG1028	Short-chain dehydrogenase reductase Sdr
JVX94_09385	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JVX94_09385	COG0723	plastoquinol--plastocyanin reductase activity
JVX94_09390	COG0840	transmembrane signaling receptor activity
JVX94_09395	COG0406	alpha-ribazole phosphatase activity
JVX94_09400	COG1404	Belongs to the peptidase S8 family
JVX94_09405	COG0501	Belongs to the peptidase M48B family
JVX94_09415	COG0318	PFAM AMP-dependent synthetase and ligase
JVX94_09420	COG0095	Lipoate-protein ligase
JVX94_09425	COG1234	tRNA 3'-trailer cleavage
JVX94_09435	COG1301	dicarboxylic acid transport
JVX94_09440	COG1363	Peptidase, m42
JVX94_09445	COG1511	domain protein
JVX94_09450	COG1309	transcriptional regulator
JVX94_09455	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
JVX94_09460	COG0276	Catalyzes the ferrous insertion into protoporphyrin IX
JVX94_09465	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
JVX94_09470	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JVX94_09475	COG2329	Antibiotic biosynthesis monooxygenase
JVX94_09485	COG1473	amidohydrolase
JVX94_09495	COG4473	ABC transporter
JVX94_09500	COG1131	(ABC) transporter
JVX94_09505	COG0537	adenosine 5'-monophosphoramidase activity
JVX94_09510	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
JVX94_09525	COG4980	gas vesicle protein
JVX94_09530	COG1846	Transcriptional regulator
JVX94_09555	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JVX94_09565	COG3481	metal-dependent phosphohydrolase, HD sub domain
JVX94_09570	COG4717	serine-type aminopeptidase activity
JVX94_09575	COG0420	3'-5' exonuclease activity
JVX94_09585	COG1024	Enoyl-CoA hydratase
JVX94_09595	COG0490	domain, Protein
JVX94_09600	COG0475	glutathione-regulated potassium exporter activity
JVX94_09610	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JVX94_09615	COG0561	phosphatase activity
JVX94_09620	COG3679	Belongs to the UPF0342 family
JVX94_09625	COG4399	Belongs to the UPF0754 family
JVX94_09630	COG0189	ligase activity
JVX94_09635	COG0189	ligase activity
JVX94_09645	COG2508	Transcriptional regulator
JVX94_09650	COG3842	ATPase activity
JVX94_09660	COG0702	epimerase
JVX94_09665	COG1132	(ABC) transporter
JVX94_09670	COG1132	(ABC) transporter
JVX94_09675	COG0589	response to stress
JVX94_09680	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JVX94_09685	COG0726	polysaccharide deacetylase
JVX94_09690	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
JVX94_09695	COG0668	transmembrane transport
JVX94_09705	COG0584	glycerophosphoryl diester phosphodiesterase
JVX94_09710	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
JVX94_09715	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
JVX94_09725	COG1253	flavin adenine dinucleotide binding
JVX94_09730	COG0789	Transcriptional regulator
JVX94_09735	COG1253	flavin adenine dinucleotide binding
JVX94_09740	COG0204	Acyl-transferase
JVX94_09745	COG1595	DNA-templated transcription, initiation
JVX94_09760	COG0531	amino acid
JVX94_09765	COG1388	LysM domain
JVX94_09765	COG0791	NLP P60 protein
JVX94_09770	COG1785	Belongs to the alkaline phosphatase family
JVX94_09775	COG2719	SpoVR family
JVX94_09780	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
JVX94_09780	COG1017	nitric oxide dioxygenase activity
JVX94_09785	COG1959	2 iron, 2 sulfur cluster binding
JVX94_09790	COG0753	catalase activity
JVX94_09810	COG2197	response regulator
JVX94_09815	COG4585	Histidine kinase
JVX94_09815	COG2203	Gaf domain
JVX94_09820	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
JVX94_09825	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
JVX94_09830	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
JVX94_09835	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
JVX94_09840	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
JVX94_09845	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JVX94_09850	COG3835	regulator
JVX94_09865	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JVX94_09865	COG3153	acetyltransferase
JVX94_09870	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JVX94_09880	COG0564	pseudouridine synthase activity
JVX94_09885	COG3764	Sortase (surface protein transpeptidase)
JVX94_09890	COG1525	nuclease
JVX94_09890	COG4085	toxin activity
JVX94_09890	COG0737	Belongs to the 5'-nucleotidase family
JVX94_09895	COG5002	protein histidine kinase activity
JVX94_09900	COG5577	PFAM Coat F domain
JVX94_09925	COG3706	GGDEF domain
JVX94_09930	COG1278	Cold shock
JVX94_09940	COG0655	NAD(P)H dehydrogenase (quinone) activity
JVX94_09945	COG2814	Major facilitator Superfamily
JVX94_09950	COG1566	PFAM secretion protein HlyD family protein
JVX94_09955	COG2718	Belongs to the UPF0229 family
JVX94_09960	COG2766	serine protein kinase
JVX94_09965	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
JVX94_09975	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
JVX94_09980	COG3382	B3 4 domain protein
JVX94_10010	COG1131	(ABC) transporter
JVX94_10025	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JVX94_10030	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JVX94_10035	COG1116	anion transmembrane transporter activity
JVX94_10045	COG2873	o-acetylhomoserine
JVX94_10050	COG0681	Belongs to the peptidase S26 family
JVX94_10055	COG1368	sulfuric ester hydrolase activity
JVX94_10255	COG0735	belongs to the Fur family
JVX94_10260	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
JVX94_10265	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
JVX94_10270	COG4129	membrane
JVX94_10275	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JVX94_10280	COG0601	transmembrane transport
JVX94_10285	COG0747	negative chemotaxis
JVX94_10290	COG4608	Belongs to the ABC transporter superfamily
JVX94_10295	COG0444	Belongs to the ABC transporter superfamily
JVX94_10300	COG1132	(ABC) transporter
JVX94_10305	COG3557	Belongs to the UPF0374 family
JVX94_10320	COG1028	Short-chain dehydrogenase reductase Sdr
JVX94_10330	COG1194	a g-specific adenine glycosylase
JVX94_10335	COG1988	membrane-bound metal-dependent
JVX94_10380	COG1191	sigma factor activity
JVX94_10390	COG2140	Oxalate decarboxylase
JVX94_10405	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
JVX94_10410	COG4485	Bacterial membrane protein, YfhO
JVX94_10415	COG0463	Glycosyl transferase, family 2
JVX94_10440	COG2137	regulation of response to DNA damage stimulus
JVX94_10445	COG1090	epimerase
JVX94_10460	COG0778	Nitroreductase
JVX94_10480	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
JVX94_10480	COG0392	lysyltransferase activity
JVX94_10485	COG1846	Transcriptional regulator
JVX94_10495	COG2318	DinB family
JVX94_10515	COG1595	DNA-templated transcription, initiation
JVX94_10520	COG1742	UPF0060 membrane protein
JVX94_10525	COG1132	(ABC) transporter
JVX94_10530	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JVX94_10535	COG2169	Transcriptional regulator
JVX94_10540	COG0492	ferredoxin-NADP+ reductase activity
JVX94_10545	COG2755	lipolytic protein G-D-S-L family
JVX94_10550	COG4637	Psort location Cytoplasmic, score
JVX94_10560	COG1309	transcriptional regulator
JVX94_10565	COG2076	Multidrug Resistance protein
JVX94_10570	COG2076	Multidrug Resistance protein
JVX94_10610	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
JVX94_10620	COG2814	Major facilitator Superfamily
JVX94_10625	COG0789	Transcriptional regulator
JVX94_10630	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JVX94_10635	COG1942	4-Oxalocrotonate Tautomerase
JVX94_10640	COG0583	DNA-binding transcription factor activity
JVX94_10655	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
JVX94_10660	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
JVX94_10670	COG0598	Magnesium transport protein CorA
JVX94_10680	COG0726	polysaccharide deacetylase
JVX94_10690	COG0535	radical SAM domain protein
JVX94_10695	COG0668	transmembrane transport
JVX94_10700	COG0217	transcriptional regulatory protein
JVX94_10710	COG0387	Pfam Sodium calcium exchanger
JVX94_10720	COG0477	Major facilitator Superfamily
JVX94_10725	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JVX94_10730	COG1295	ribonuclease BN
JVX94_10735	COG4980	gas vesicle protein
JVX94_10740	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
JVX94_10745	COG1115	amino acid carrier protein
JVX94_10750	COG4840	Belongs to the UPF0435 family
JVX94_10755	COG0693	protein deglycase activity
JVX94_10760	COG0737	Belongs to the 5'-nucleotidase family
JVX94_10770	COG2188	Transcriptional regulator
JVX94_10775	COG0366	Alpha amylase catalytic
JVX94_10780	COG1263	PTS System
JVX94_10780	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JVX94_10795	COG0076	glutamate decarboxylase activity
JVX94_10800	COG1368	sulfuric ester hydrolase activity
JVX94_10820	COG3739	integral membrane protein
JVX94_10825	COG1263	PTS System
JVX94_10825	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JVX94_10830	COG0024	Methionine aminopeptidase
JVX94_10845	COG2258	MOSC domain
JVX94_10850	COG1254	Belongs to the acylphosphatase family
JVX94_10855	COG0583	DNA-binding transcription factor activity
JVX94_10860	COG0477	Major facilitator Superfamily
JVX94_10865	COG4362	Belongs to the NOS family. Bacterial NOS oxygenase subfamily
JVX94_10870	COG1695	Transcriptional regulator
JVX94_10875	COG3479	Phenolic acid decarboxylase
JVX94_10885	COG2851	Citrate transporter
JVX94_10890	COG3181	Tripartite tricarboxylate transporter family receptor
JVX94_10895	COG4565	transcriptional regulatory protein
JVX94_10900	COG3290	protein histidine kinase activity
JVX94_10910	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JVX94_10910	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JVX94_10920	COG1262	PFAM Formylglycine-generating sulfatase enzyme
JVX94_10925	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
JVX94_10925	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
JVX94_10945	COG2130	NADP-dependent
JVX94_10950	COG0513	Belongs to the DEAD box helicase family
JVX94_10955	COG0488	(ABC) transporter
JVX94_10960	COG2814	Major facilitator Superfamily
JVX94_10965	COG0789	Transcriptional regulator
JVX94_10970	COG1469	GTP cyclohydrolase I activity
JVX94_10975	COG0488	(ABC) transporter
JVX94_10980	COG0463	Glycosyl transferase, family 2
JVX94_10985	COG0531	amino acid
JVX94_11000	COG0071	Belongs to the small heat shock protein (HSP20) family
JVX94_11015	COG0471	metal ion transport
JVX94_11025	COG2223	nitrite transmembrane transporter activity
JVX94_11030	COG1442	glycosyl transferase family 8
JVX94_11035	COG1216	Glycosyl transferase, family 2
JVX94_11040	COG1442	glycosyl transferase family 8
JVX94_11045	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JVX94_11050	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
JVX94_11080	COG2211	Major facilitator Superfamily
JVX94_11090	COG1486	melibiose metabolic process
JVX94_11105	COG0492	ferredoxin-NADP+ reductase activity
JVX94_11110	COG1959	2 iron, 2 sulfur cluster binding
JVX94_11120	COG1486	melibiose metabolic process
JVX94_11125	COG1263	PTS System
JVX94_11125	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JVX94_11130	COG1737	Transcriptional regulator
JVX94_11140	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JVX94_11145	COG0457	Tetratricopeptide repeat
JVX94_11165	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
JVX94_11170	COG1597	lipid kinase activity
JVX94_11175	COG1957	nucleoside hydrolase
JVX94_11180	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JVX94_11185	COG1309	transcriptional regulator
JVX94_11190	COG0064	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
JVX94_11195	COG0154	amidase activity
JVX94_11200	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
JVX94_11205	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JVX94_11210	COG1285	pathogenesis
JVX94_11215	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
JVX94_11220	COG4851	CamS sex pheromone cAM373 precursor
JVX94_11225	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
JVX94_11230	COG0210	DNA helicase
JVX94_11235	COG1646	35 carbon atoms) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P), producing heptaprenylglyceryl phosphate (HepGP). This reaction is an ether-bond-formation step in the biosynthesis of archaea-type G1P-based membrane lipids found in Bacillales
JVX94_11250	COG0069	glutamate synthase activity
JVX94_11260	COG4496	protein, YerC YecD
JVX94_11265	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
JVX94_11275	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JVX94_11280	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
JVX94_11285	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
JVX94_11290	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JVX94_11310	COG0151	Belongs to the GarS family
JVX94_11315	COG0138	bifunctional purine biosynthesis protein purh
JVX94_11320	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
JVX94_11325	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
JVX94_11330	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
JVX94_11335	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
JVX94_11340	COG0047	phosphoribosylformylglycinamidine synthase activity
JVX94_11345	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
JVX94_11350	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
JVX94_11355	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
JVX94_11360	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
JVX94_11365	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
JVX94_11375	COG4843	Uncharacterized protein conserved in bacteria (DUF2179)
JVX94_11380	COG3064	Membrane
JVX94_11395	COG2252	PERMEase
JVX94_11400	COG0583	DNA-binding transcription factor activity
JVX94_11405	COG2814	Major facilitator Superfamily
JVX94_11415	COG1595	DNA-templated transcription, initiation
JVX94_11450	COG2207	Transcriptional regulator
JVX94_11455	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
JVX94_11460	COG1917	Cupin 2, conserved barrel domain protein
JVX94_11460	COG2207	Transcriptional regulator
JVX94_11465	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
JVX94_11470	COG0518	GMP synthase (glutamine-hydrolyzing) activity
JVX94_11470	COG0519	Catalyzes the synthesis of GMP from XMP
JVX94_11475	COG1305	Transglutaminase-like
JVX94_11480	COG1721	protein (some members contain a von Willebrand factor type A (vWA) domain
JVX94_11485	COG0714	Associated with various cellular activities
JVX94_11490	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
JVX94_11495	COG1113	amino acid transport
JVX94_11500	COG2132	Multicopper oxidase
JVX94_11510	COG0823	Involved in the tonB-independent uptake of proteins
JVX94_11515	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
JVX94_11560	COG0459	protein refolding
JVX94_11565	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
JVX94_11570	COG1266	CAAX protease self-immunity
JVX94_11585	COG0805	protein transport
JVX94_11590	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
JVX94_11595	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
JVX94_11600	COG0315	cyclic pyranopterin monophosphate synthase activity
JVX94_11605	COG0488	(ABC) transporter
JVX94_11610	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
JVX94_11615	COG0456	acetyltransferase
JVX94_11620	COG1214	PFAM Peptidase M22, glycoprotease
JVX94_11625	COG0802	atpase or kinase
JVX94_11630	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
JVX94_11670	COG1301	dicarboxylic acid transport
JVX94_11680	COG0697	spore germination
JVX94_11685	COG1296	Branched-chain amino acid permease (Azaleucine resistance)
JVX94_11695	COG4122	O-methyltransferase activity
JVX94_11705	COG0456	acetyltransferase
JVX94_11715	COG1396	sequence-specific DNA binding
JVX94_11730	COG0778	Nitroreductase
JVX94_11735	COG1846	Transcriptional regulator
JVX94_11740	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
JVX94_11745	COG1309	transcriptional regulator
JVX94_11775	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JVX94_11780	COG2814	Major facilitator Superfamily
JVX94_11800	COG0252	asparaginase activity
JVX94_11805	COG1404	Belongs to the peptidase S8 family
JVX94_11820	COG4221	oxidoreductase activity
JVX94_11830	COG0657	acetylesterase activity
JVX94_11835	COG0477	Major facilitator Superfamily
JVX94_11850	COG0789	Transcriptional regulator
JVX94_11855	COG1064	alcohol dehydrogenase
JVX94_11860	COG1329	Transcriptional regulator
JVX94_11865	COG1278	Cold shock
JVX94_11870	COG0456	acetyltransferase
JVX94_11870	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
JVX94_11885	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JVX94_11895	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
JVX94_11905	COG2197	response regulator
JVX94_11910	COG4585	Histidine kinase
JVX94_11955	COG3284	Transcriptional regulator
JVX94_11960	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JVX94_11965	COG0508	dehydrogenase complex catalyzes the overall conversion of
JVX94_11970	COG0022	dehydrogenase e1 component
JVX94_11975	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
JVX94_11980	COG3091	SprT-like family
JVX94_11990	COG2183	response to ionizing radiation
JVX94_11995	COG2208	phosphoserine phosphatase activity
JVX94_12000	COG1191	sigma factor activity
JVX94_12005	COG2172	sigma factor antagonist activity
JVX94_12010	COG1366	Belongs to the anti-sigma-factor antagonist family
JVX94_12015	COG2208	phosphoserine phosphatase activity
JVX94_12020	COG2172	sigma factor antagonist activity
JVX94_12025	COG1366	Belongs to the anti-sigma-factor antagonist family
JVX94_12030	COG1366	Belongs to the anti-sigma-factor antagonist family
JVX94_12035	COG2337	Toxic component of a toxin-antitoxin (TA) module
JVX94_12040	COG0864	Transcriptional regulator
JVX94_12045	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
JVX94_12050	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
JVX94_12055	COG0736	holo-[acyl-carrier-protein] synthase activity
JVX94_12060	COG0705	Rhomboid family
JVX94_12065	COG3428	Bacterial PH domain
JVX94_12070	COG3402	PFAM membrane-flanked domain
JVX94_12075	COG0513	Belongs to the DEAD box helicase family
JVX94_12090	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
JVX94_12095	COG1181	Belongs to the D-alanine--D-alanine ligase family
JVX94_12100	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JVX94_12115	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
JVX94_12120	COG1131	(ABC) transporter
JVX94_12125	COG1301	dicarboxylic acid transport
JVX94_12130	COG0628	permease
JVX94_12135	COG1301	dicarboxylic acid transport
JVX94_12140	COG4565	transcriptional regulatory protein
JVX94_12145	COG3290	protein histidine kinase activity
JVX94_12150	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
JVX94_12155	COG2217	Heavy metal translocating P-type atpase
JVX94_12160	COG2261	transglycosylase associated protein
JVX94_12165	COG1914	H( )-stimulated, divalent metal cation uptake system
JVX94_12170	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JVX94_12205	COG0028	Belongs to the TPP enzyme family
JVX94_12210	COG0531	amino acid
JVX94_12220	COG1215	transferase activity, transferring glycosyl groups
JVX94_12225	COG5298	Protein conserved in bacteria
JVX94_12230	COG3706	GGDEF domain
JVX94_12235	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
JVX94_12240	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
JVX94_12240	COG0551	DNA topoisomerase type I activity
JVX94_12245	COG0473	3-isopropylmalate dehydrogenase activity
JVX94_12250	COG0697	spore germination
JVX94_12255	COG2207	Transcriptional regulator
JVX94_12255	COG1917	Cupin 2, conserved barrel domain protein
JVX94_12260	COG1802	Transcriptional regulator
JVX94_12265	COG2814	Major facilitator Superfamily
JVX94_12290	COG3871	stress protein (general stress protein 26)
JVX94_12295	COG1028	Short-chain dehydrogenase reductase Sdr
JVX94_12300	COG2226	methyltransferase
JVX94_12305	COG3711	transcriptional antiterminator
JVX94_12315	COG2755	lipolytic protein G-D-S-L family
JVX94_12320	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
JVX94_12325	COG1414	Transcriptional regulator
JVX94_12330	COG1984	allophanate hydrolase subunit 2
JVX94_12335	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
JVX94_12340	COG4336	lyase activity
JVX94_12345	COG1914	H( )-stimulated, divalent metal cation uptake system
JVX94_12350	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
JVX94_12355	COG0561	phosphatase activity
JVX94_12365	COG0346	lactoylglutathione lyase activity
JVX94_12385	COG4221	oxidoreductase activity
JVX94_12395	COG0840	transmembrane signaling receptor activity
JVX94_12400	COG0246	Mannitol dehydrogenase
JVX94_12405	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
JVX94_12410	COG2213	PTS system mannitol-specific
JVX94_12415	COG2372	response to copper ion
JVX94_12415	COG1276	copper resistance
JVX94_12420	COG4549	nuclear export factor GLE1
JVX94_12425	COG2249	NAD(P)H dehydrogenase (quinone) activity
JVX94_12430	COG1012	belongs to the aldehyde dehydrogenase family
JVX94_12435	COG0531	amino acid
JVX94_12440	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
JVX94_12445	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JVX94_12450	COG0640	Transcriptional regulator
JVX94_12460	COG1309	transcriptional regulator
JVX94_12465	COG2814	Major facilitator Superfamily
JVX94_12470	COG0527	aspartate kinase activity
JVX94_12475	COG1366	Belongs to the anti-sigma-factor antagonist family
JVX94_12480	COG5002	protein histidine kinase activity
JVX94_12480	COG3850	Histidine kinase
JVX94_12485	COG0745	RESPONSE REGULATOR receiver
JVX94_12490	COG2079	MmgE PrpD family protein
JVX94_12495	COG1473	amidohydrolase
JVX94_12500	COG1126	abc transporter atp-binding protein
JVX94_12505	COG0765	amino acid transport
JVX94_12510	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JVX94_12515	COG0456	acetyltransferase
JVX94_12520	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JVX94_12525	COG5434	Belongs to the glycosyl hydrolase 28 family
JVX94_12530	COG3104	oligopeptide transport
JVX94_12535	COG0833	amino acid
JVX94_12540	COG0412	Dienelactone hydrolase
JVX94_12545	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JVX94_12550	COG0765	amino acid transport
JVX94_12555	COG1126	abc transporter atp-binding protein
JVX94_12560	COG2002	toxin-antitoxin pair type II binding
JVX94_12565	COG3764	Sortase (surface protein transpeptidase)
JVX94_12575	COG2364	Membrane
JVX94_12585	COG2207	Transcriptional regulator
JVX94_12585	COG3708	Transcriptional regulator
JVX94_12595	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JVX94_12600	COG0697	spore germination
JVX94_12605	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
JVX94_12620	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JVX94_12625	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JVX94_12630	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JVX94_12645	COG3842	ATPase activity
JVX94_12665	COG3209	COG3209 Rhs family protein
JVX94_12670	COG3290	protein histidine kinase activity
JVX94_12670	COG0840	transmembrane signaling receptor activity
JVX94_12680	COG2746	aminoglycoside 3-N-acetyltransferase activity
JVX94_12685	COG1522	sequence-specific DNA binding
JVX94_12690	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
JVX94_12700	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JVX94_12705	COG0765	amino acid transport
JVX94_12710	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
JVX94_12715	COG2508	Transcriptional regulator
JVX94_12720	COG1012	belongs to the aldehyde dehydrogenase family
JVX94_12725	COG0506	proline dehydrogenase activity
JVX94_12730	COG3541	Predicted nucleotidyltransferase
JVX94_12740	COG3458	cephalosporin-C deacetylase activity
JVX94_12745	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JVX94_12750	COG0583	DNA-binding transcription factor activity
JVX94_12755	COG2226	methyltransferase
JVX94_12760	COG0477	Major facilitator Superfamily
JVX94_12770	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JVX94_12775	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
JVX94_12790	COG2271	Major facilitator Superfamily
JVX94_12795	COG1804	L-carnitine dehydratase bile acid-inducible protein F
JVX94_12805	COG0028	Belongs to the TPP enzyme family
JVX94_12810	COG0710	3-dehydroquinate dehydratase activity
JVX94_12815	COG1012	belongs to the aldehyde dehydrogenase family
JVX94_12840	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
JVX94_12845	COG3665	Urea carboxylase-associated protein
JVX94_12850	COG1113	amino acid transport
JVX94_12855	COG3403	YqcI/YcgG family
JVX94_12865	COG1280	lysine exporter protein (LysE YggA)
JVX94_12870	COG0738	Major facilitator superfamily
JVX94_12875	COG0673	inositol 2-dehydrogenase activity
JVX94_12880	COG0561	phosphatase activity
JVX94_12885	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
JVX94_12890	COG1609	Transcriptional regulator
JVX94_12895	COG1620	l-lactate permease
JVX94_12900	COG0039	L-malate dehydrogenase activity
JVX94_12905	COG1288	antiporter activity
JVX94_12910	COG1473	amidohydrolase
JVX94_12925	COG2113	Glycine betaine
JVX94_12930	COG4176	ABC-type proline glycine betaine transport system permease component
JVX94_12935	COG0517	IMP dehydrogenase activity
JVX94_12935	COG4175	Glycine betaine
JVX94_12940	COG3853	Toxic anion resistance protein (TelA)
JVX94_12970	COG0861	Integral membrane protein TerC family
JVX94_12975	COG2310	stress, protein
JVX94_12980	COG2310	stress, protein
JVX94_12985	COG2310	stress, protein
JVX94_12990	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JVX94_13000	COG1028	Short-chain dehydrogenase reductase Sdr
JVX94_13005	COG3773	Cell wall hydrolase
JVX94_13015	COG1404	Belongs to the peptidase S8 family
JVX94_13030	COG1668	transmembrane transport
JVX94_13035	COG4555	ABC transporter
JVX94_13040	COG3279	Response regulator of the LytR AlgR family
JVX94_13045	COG3290	protein histidine kinase activity
JVX94_13050	COG0667	Aldo Keto reductase
JVX94_13060	COG4585	Histidine kinase
JVX94_13065	COG2197	response regulator
JVX94_13075	COG3012	SEC-C Motif Domain Protein
JVX94_13075	COG1405	negative regulation of cell septum assembly
JVX94_13080	COG0784	Response regulator, receiver
JVX94_13085	COG4191	Histidine kinase
JVX94_13090	COG2066	Belongs to the glutaminase family
JVX94_13095	COG1115	amino acid carrier protein
JVX94_13100	COG0596	Alpha beta hydrolase
JVX94_13110	COG0531	amino acid
JVX94_13115	COG0318	PFAM AMP-dependent synthetase and ligase
JVX94_13120	COG1846	Transcriptional regulator
JVX94_13125	COG1063	alcohol dehydrogenase
JVX94_13130	COG1917	Cupin 2, conserved barrel domain protein
JVX94_13135	COG1309	transcriptional regulator
JVX94_13145	COG1404	Belongs to the peptidase S8 family
JVX94_13160	COG0456	acetyltransferase
JVX94_13165	COG2814	Major facilitator Superfamily
JVX94_13180	COG1695	Transcriptional regulator
JVX94_13185	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JVX94_13190	COG2040	homocysteine
JVX94_13195	COG0833	amino acid
JVX94_13215	COG1404	Belongs to the peptidase S8 family
JVX94_13225	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JVX94_13230	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JVX94_13235	COG0383	alpha-mannosidase activity
JVX94_13240	COG1940	carbohydrate kinase activity
JVX94_13245	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JVX94_13245	COG3711	transcriptional antiterminator
JVX94_13265	COG2723	6-phospho-beta-galactosidase activity
JVX94_13270	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JVX94_13270	COG2190	(PTS) system
JVX94_13270	COG1263	PTS System
JVX94_13275	COG3711	transcriptional antiterminator
JVX94_13285	COG0531	amino acid
JVX94_13290	COG1054	Belongs to the UPF0176 family
JVX94_13295	COG0371	Dehydrogenase
JVX94_13300	COG0656	L-ascorbic acid biosynthetic process
JVX94_13310	COG1683	Conserved Protein
JVX94_13320	COG1846	Transcriptional regulator
JVX94_13330	COG2814	Major facilitator Superfamily
JVX94_13335	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
JVX94_13345	COG0730	response to heat
JVX94_13350	COG0425	Belongs to the sulfur carrier protein TusA family
JVX94_13355	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JVX94_13355	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JVX94_13360	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JVX94_13360	COG0425	Belongs to the sulfur carrier protein TusA family
JVX94_13370	COG2210	Belongs to the sulfur carrier protein TusA family
JVX94_13375	COG1937	Protein conserved in bacteria
JVX94_13400	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JVX94_13405	COG1331	Highly conserved protein containing a thioredoxin domain
JVX94_13410	COG1846	Transcriptional regulator
JVX94_13415	COG2153	protein acetylation
JVX94_13420	COG2364	Membrane
JVX94_13425	COG1331	Highly conserved protein containing a thioredoxin domain
JVX94_13430	COG1331	Highly conserved protein containing a thioredoxin domain
JVX94_13440	COG2271	Major facilitator Superfamily
JVX94_13445	COG0584	glycerophosphoryl diester phosphodiesterase
JVX94_13455	COG1113	amino acid transport
JVX94_13470	COG4555	ABC transporter
JVX94_13495	COG1309	transcriptional regulator
JVX94_13515	COG2311	Membrane
JVX94_13525	COG1413	lyase activity
JVX94_13535	COG1131	(ABC) transporter
JVX94_13550	COG1131	(ABC) transporter
JVX94_13580	COG1131	(ABC) transporter
JVX94_13585	COG2205	protein histidine kinase activity
JVX94_13590	COG0745	RESPONSE REGULATOR receiver
JVX94_13595	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
JVX94_13600	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
JVX94_13605	COG4856	YbbR-like protein
JVX94_13610	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
JVX94_13615	COG5662	AntiSigma factor
JVX94_13620	COG1595	DNA-templated transcription, initiation
JVX94_13655	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
JVX94_13660	COG1737	Transcriptional regulator
JVX94_13665	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JVX94_13665	COG1263	PTS System
JVX94_13670	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JVX94_13675	COG1472	Belongs to the glycosyl hydrolase 3 family
JVX94_13680	COG3876	Protein conserved in bacteria
JVX94_13685	COG0385	Bile acid
JVX94_13715	COG0726	polysaccharide deacetylase
JVX94_13720	COG2194	sulfuric ester hydrolase activity
JVX94_13730	COG0489	protein tyrosine kinase activity
JVX94_13735	COG0860	N-Acetylmuramoyl-L-alanine amidase
JVX94_13760	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JVX94_13770	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
JVX94_13775	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
JVX94_13780	COG0101	tRNA pseudouridine synthase activity
JVX94_13785	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
JVX94_13790	COG1122	ATPase activity
JVX94_13795	COG1122	ATPase activity
JVX94_13800	COG0203	ribosomal protein L17
JVX94_13805	COG0202	RNA polymerase activity
JVX94_13810	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
JVX94_13815	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
JVX94_13820	COG0257	Belongs to the bacterial ribosomal protein bL36 family
JVX94_13825	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
JVX94_13830	COG0024	Methionine aminopeptidase
JVX94_13835	COG0563	adenylate kinase activity
JVX94_13840	COG0201	protein transport
JVX94_13845	COG0200	Binds to the 23S rRNA
JVX94_13850	COG1841	ribosomal large subunit assembly
JVX94_13855	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
JVX94_13860	COG0256	This is one of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance
JVX94_13865	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
JVX94_13870	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
JVX94_13875	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
JVX94_13880	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
JVX94_13885	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
JVX94_13890	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
JVX94_13895	COG0186	One of the primary rRNA binding proteins, it binds specifically to the 5'-end of 16S ribosomal RNA
JVX94_13900	COG0255	Belongs to the universal ribosomal protein uL29 family
JVX94_13910	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
JVX94_13915	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
JVX94_13920	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
JVX94_13925	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
JVX94_13930	COG0089	rRNA binding
JVX94_13935	COG0088	Forms part of the polypeptide exit tunnel
JVX94_13940	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
JVX94_13950	COG0596	Alpha beta hydrolase
JVX94_13955	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
JVX94_13960	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
JVX94_13965	COG0049	tRNA binding
JVX94_13970	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
JVX94_13975	COG1358	cellular component organization or biogenesis
JVX94_13980	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
JVX94_13985	COG0085	RNA polymerase activity
JVX94_13990	COG2813	Specifically methylates the guanine in position
JVX94_13995	COG0222	ribosome binding
JVX94_14000	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
JVX94_14005	COG0081	regulation of translation
JVX94_14015	COG0250	Participates in transcription elongation, termination and antitermination
JVX94_14020	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
JVX94_14025	COG0267	Belongs to the bacterial ribosomal protein bL33 family
JVX94_14030	COG1595	DNA-templated transcription, initiation
JVX94_14035	COG3688	RNA-binding protein containing a PIN domain
JVX94_14040	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JVX94_14045	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
JVX94_14050	COG0215	cysteine-tRNA ligase activity
JVX94_14055	COG1045	serine acetyltransferase
JVX94_14060	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
JVX94_14065	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
JVX94_14070	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
JVX94_14075	COG4956	integral membrane protein (PIN domain superfamily)
JVX94_14080	COG1623	Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c- di-AMP acts as a signaling molecule that couples DNA integrity with progression of sporulation. The rise in c-di-AMP level generated by DisA while scanning the chromosome, operates as a positive signal that advances sporulation
JVX94_14085	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
JVX94_14090	COG0542	response to heat
JVX94_14095	COG3869	Catalyzes the specific phosphorylation of arginine residues in
JVX94_14100	COG3880	PFAM UvrB UvrC protein
JVX94_14105	COG4463	regulation of RNA biosynthetic process
JVX94_14185	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
JVX94_14190	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JVX94_14195	COG1396	sequence-specific DNA binding
JVX94_14200	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
JVX94_14205	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
JVX94_14210	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
JVX94_14215	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JVX94_14220	COG0512	Glutamine amidotransferase of anthranilate synthase
JVX94_14225	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
JVX94_14230	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JVX94_14235	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
JVX94_14240	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
JVX94_14245	COG1521	Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis
JVX94_14250	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
JVX94_14255	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
JVX94_14260	COG0037	tRNA processing
JVX94_14265	COG0515	serine threonine protein kinase
JVX94_14270	COG2304	oxidoreductase activity
JVX94_14275	COG2208	phosphoserine phosphatase activity
JVX94_14290	COG1098	S1 RNA binding domain
JVX94_14295	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
JVX94_14310	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
JVX94_14315	COG3956	TIGRFAM MazG family protein
JVX94_14320	COG2244	polysaccharide biosynthetic process
JVX94_14325	COG2002	toxin-antitoxin pair type II binding
JVX94_14330	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
JVX94_14340	COG0193	aminoacyl-tRNA hydrolase activity
JVX94_14345	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
JVX94_14350	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
JVX94_14360	COG2088	sporulation resulting in formation of a cellular spore
JVX94_14365	COG0251	oxidation-reduction process
JVX94_14370	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
JVX94_14375	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
JVX94_14385	COG4466	Protein conserved in bacteria
JVX94_14395	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
JVX94_14400	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
JVX94_14405	COG3583	domain protein
JVX94_14405	COG3584	3D domain protein
JVX94_14410	COG0084	hydrolase, TatD family'
JVX94_14415	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JVX94_14415	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JVX94_14420	COG2002	toxin-antitoxin pair type II binding
JVX94_14425	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
JVX94_14430	COG2827	Endonuclease containing a URI domain
JVX94_14435	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
JVX94_14440	COG4467	Involved in initiation control of chromosome replication
JVX94_14445	COG1774	PSP1 C-terminal conserved region
JVX94_14450	COG0470	DNA polymerase III
JVX94_14455	COG1728	Protein conserved in bacteria
JVX94_14460	COG3870	Protein conserved in bacteria
JVX94_14465	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
JVX94_14470	COG1982	Orn Lys Arg decarboxylase major
JVX94_14475	COG3853	Toxic anion resistance protein (TelA)
JVX94_14480	COG4915	5-bromo-4-chloroindolyl phosphate hydrolysis protein
JVX94_14525	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
JVX94_14530	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
JVX94_14535	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
JVX94_14545	COG0590	tRNA wobble adenosine to inosine editing
JVX94_14550	COG1335	isochorismatase
JVX94_14555	COG3858	chitin binding
JVX94_14555	COG1388	LysM domain
JVX94_14560	COG1428	Deoxynucleoside kinase
JVX94_14565	COG1428	Deoxynucleoside kinase
JVX94_14575	COG0840	transmembrane signaling receptor activity
JVX94_14580	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
JVX94_14585	COG0311	Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
JVX94_14590	COG0214	Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively
JVX94_14595	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JVX94_14600	COG1686	Belongs to the peptidase S11 family
JVX94_14605	COG0517	IMP dehydrogenase activity
JVX94_14605	COG0516	GMP reductase activity
JVX94_14640	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
JVX94_14645	COG0187	DNA topoisomerase II activity
JVX94_14655	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
JVX94_14660	COG2501	S4 domain
JVX94_14665	COG0592	DNA-directed DNA polymerase activity
JVX94_14670	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
JVX94_14675	COG0230	Belongs to the bacterial ribosomal protein bL34 family
JVX94_14680	COG0594	ribonuclease P activity
JVX94_14685	COG0706	membrane insertase activity
JVX94_14690	COG1847	R3H domain protein
JVX94_14695	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
JVX94_14700	COG0445	tRNA wobble uridine modification
JVX94_14705	COG0357	Ribosomal RNA small subunit methyltransferase G
JVX94_14710	COG1475	DNA binding
JVX94_14715	COG1192	Involved in chromosome partitioning
JVX94_14720	COG1475	DNA binding
JVX94_14730	COG3949	Membrane
JVX94_14745	COG4481	Protein conserved in bacteria
JVX94_14750	COG0012	GTP binding
JVX94_14755	COG0360	Binds together with S18 to 16S ribosomal RNA
JVX94_14760	COG0629	single-stranded DNA binding
JVX94_14765	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
JVX94_14770	COG1125	glycine betaine transport
JVX94_14770	COG0517	IMP dehydrogenase activity
JVX94_14775	COG1174	glycine betaine transport
JVX94_14780	COG0346	lactoylglutathione lyase activity
JVX94_14785	COG0400	carboxylic ester hydrolase activity
JVX94_14790	COG0655	NAD(P)H dehydrogenase (quinone) activity
JVX94_14795	COG0753	catalase activity
JVX94_14805	COG1595	DNA-templated transcription, initiation
JVX94_14815	COG1227	inorganic diphosphatase activity
JVX94_14820	COG4241	membrane
JVX94_14825	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
JVX94_14830	COG0359	binds to the 23S rRNA
JVX94_14835	COG2807	transmembrane transport
JVX94_14840	COG3093	addiction module antidote protein HigA
JVX94_14845	COG2819	hydrolase of the alpha beta superfamily
JVX94_14850	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JVX94_14855	COG2207	Transcriptional regulator
JVX94_14855	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JVX94_14860	COG3251	PFAM MbtH domain protein
JVX94_14865	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JVX94_14870	COG1535	isochorismatase
JVX94_14870	COG3433	isochorismatase activity
JVX94_14875	COG1021	2,3-dihydroxybenzoate-AMP ligase
JVX94_14880	COG1169	isochorismate synthase
JVX94_14885	COG1028	Short-chain dehydrogenase reductase Sdr
JVX94_14890	COG2819	hydrolase of the alpha beta superfamily
JVX94_14915	COG0305	Participates in initiation and elongation during chromosome replication
JVX94_14920	COG0346	lactoylglutathione lyase activity
JVX94_14925	COG2124	cytochrome p450
JVX94_14930	COG1309	transcriptional regulator
JVX94_14935	COG0104	Plays an important role in the de novo pathway of purine nucleotide biosynthesis. Catalyzes the first committed step in the biosynthesis of AMP from IMP
JVX94_14940	COG2311	Membrane
JVX94_14950	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JVX94_14975	COG0745	RESPONSE REGULATOR receiver
JVX94_14980	COG5002	protein histidine kinase activity
JVX94_14985	COG4863	YycH protein
JVX94_14990	COG4853	Protein conserved in bacteria
JVX94_14995	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
JVX94_15000	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JVX94_15005	COG0456	acetyltransferase
JVX94_15025	COG4720	Psort location CytoplasmicMembrane, score
JVX94_15035	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
JVX94_15045	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
JVX94_15050	COG2815	serine threonine protein kinase
JVX94_15050	COG0515	serine threonine protein kinase
JVX94_15075	COG0640	Transcriptional regulator
JVX94_15080	COG2814	Major facilitator Superfamily
JVX94_15105	COG0583	DNA-binding transcription factor activity
JVX94_15110	COG0384	phenazine biosynthesis protein PhzF
JVX94_15125	COG2188	Transcriptional regulator
JVX94_15135	COG2723	6-phospho-beta-galactosidase activity
JVX94_15155	COG2190	(PTS) system
JVX94_15155	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JVX94_15155	COG1263	PTS System
JVX94_15165	COG2723	6-phospho-beta-galactosidase activity
JVX94_15170	COG2814	Major facilitator Superfamily
JVX94_15180	COG2814	Major facilitator Superfamily
JVX94_15185	COG1609	Transcriptional regulator
JVX94_15190	COG1113	amino acid transport
JVX94_15225	COG2190	(PTS) system
JVX94_15225	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JVX94_15225	COG1263	PTS System
JVX94_15230	COG2723	6-phospho-beta-galactosidase activity
JVX94_15235	COG3711	transcriptional antiterminator
JVX94_15240	COG0457	Tetratricopeptide repeat
JVX94_15250	COG1136	(ABC) transporter
JVX94_15250	COG0577	efflux transmembrane transporter activity
JVX94_15260	COG2814	Major facilitator Superfamily
JVX94_15265	COG1309	transcriptional regulator
JVX94_15270	COG3835	regulator
JVX94_15275	COG2610	gluconate transmembrane transporter activity
JVX94_15280	COG1929	Belongs to the glycerate kinase type-1 family
JVX94_15285	COG2824	Alkylphosphonate utilization operon protein PhnA
JVX94_15290	COG1131	(ABC) transporter
JVX94_15295	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
JVX94_15305	COG2851	Citrate transporter
JVX94_15310	COG1874	Beta-galactosidase
JVX94_15320	COG3833	ABC-type maltose transport systems, permease component
JVX94_15325	COG1175	transmembrane transport
JVX94_15330	COG2182	Extracellular solute-binding protein
JVX94_15335	COG1609	Transcriptional regulator
JVX94_15340	COG0583	DNA-binding transcription factor activity
JVX94_15375	COG1737	Transcriptional regulator
JVX94_15380	COG1070	Carbohydrate kinase
JVX94_15390	COG4335	DNA alkylation repair
JVX94_15395	COG1113	amino acid transport
JVX94_15400	COG0840	transmembrane signaling receptor activity
JVX94_15405	COG0673	inositol 2-dehydrogenase activity
JVX94_15410	COG0789	Transcriptional regulator
JVX94_15415	COG0561	phosphatase activity
JVX94_15435	COG2755	lipolytic protein G-D-S-L family
JVX94_15435	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
JVX94_15445	COG2390	Transcriptional regulator
JVX94_15450	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
JVX94_15455	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JVX94_15460	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
JVX94_15465	COG1846	Transcriptional regulator
JVX94_15470	COG0778	Nitroreductase
JVX94_15475	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
JVX94_15510	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
JVX94_15515	COG4721	ABC-type cobalt transport system, permease component
JVX94_15520	COG1122	ATPase activity
JVX94_15525	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
JVX94_15535	COG3878	Protein conserved in bacteria
JVX94_15540	COG3711	transcriptional antiterminator
JVX94_15545	COG2190	(PTS) system
JVX94_15545	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JVX94_15545	COG1263	PTS System
JVX94_15550	COG2723	6-phospho-beta-galactosidase activity
JVX94_15555	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
JVX94_15560	COG2610	gluconate transmembrane transporter activity
JVX94_15570	COG2084	Dehydrogenase
JVX94_15575	COG1737	Transcriptional regulator
JVX94_15590	COG2195	Cleaves the N-terminal amino acid of tripeptides
JVX94_15595	COG4842	Belongs to the WXG100 family
JVX94_15620	COG1396	sequence-specific DNA binding
JVX94_15625	COG0252	asparaginase activity
JVX94_15630	COG1027	Aspartate ammonia-lyase
JVX94_15635	COG1757	Na H antiporter
JVX94_15660	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JVX94_15660	COG3711	transcriptional antiterminator
JVX94_15665	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JVX94_15670	COG2723	6-phospho-beta-galactosidase activity
JVX94_15675	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JVX94_15680	COG1447	Phosphotransferase system cellobiose-specific component IIA
JVX94_15685	COG0726	polysaccharide deacetylase
JVX94_15695	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JVX94_15695	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JVX94_15700	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
JVX94_15700	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
JVX94_15705	COG2514	catechol 2,3-dioxygenase activity
JVX94_15710	COG1733	regulation of RNA biosynthetic process
JVX94_15715	COG5386	Cell surface protein
JVX94_15720	COG5386	Cell surface protein
JVX94_15745	COG4509	Sortase family
JVX94_15755	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JVX94_15765	COG1271	oxidase subunit
JVX94_15770	COG1294	oxidase, subunit
JVX94_15775	COG4988	ABC transporter
JVX94_15780	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
JVX94_15790	COG1595	DNA-templated transcription, initiation
JVX94_15805	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
JVX94_15820	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JVX94_15820	COG3711	transcriptional antiterminator
JVX94_15825	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JVX94_15830	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JVX94_15835	COG1447	Phosphotransferase system cellobiose-specific component IIA
JVX94_15840	COG1486	melibiose metabolic process
JVX94_15850	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JVX94_15855	COG3420	alginic acid biosynthetic process
JVX94_15865	COG1129	ABC transporter
JVX94_15870	COG1172	Belongs to the binding-protein-dependent transport system permease family
JVX94_15875	COG2357	RelA SpoT domain protein
JVX94_15885	COG0457	Tetratricopeptide repeat
JVX94_15890	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JVX94_15895	COG0765	amino acid transport
JVX94_15905	COG0346	lactoylglutathione lyase activity
JVX94_15910	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
JVX94_15915	COG1346	cytolysis
JVX94_15920	COG1380	Effector of murein hydrolase LrgA
JVX94_15925	COG0583	DNA-binding transcription factor activity
JVX94_15930	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
JVX94_15935	COG0352	thiamine-phosphate diphosphorylase activity
JVX94_15950	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JVX94_15955	COG3162	membrane
JVX94_15975	COG2246	polysaccharide biosynthetic process
JVX94_15990	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
JVX94_15995	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JVX94_16000	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
JVX94_16010	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
JVX94_16015	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
JVX94_16020	COG1845	cytochrome c oxidase, subunit III
JVX94_16025	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
JVX94_16035	COG0772	Belongs to the SEDS family
JVX94_16040	COG0778	Nitroreductase
JVX94_16045	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JVX94_16050	COG1404	Belongs to the peptidase S8 family
JVX94_16060	COG3711	transcriptional antiterminator
JVX94_16065	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JVX94_16065	COG1263	PTS System
JVX94_16070	COG1621	beta-fructofuranosidase activity
JVX94_16080	COG3964	amidohydrolase
JVX94_16100	COG0351	phosphomethylpyrimidine kinase
JVX94_16110	COG1216	Glycosyl transferase, family 2
JVX94_16115	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
JVX94_16120	COG1012	belongs to the aldehyde dehydrogenase family
JVX94_16130	COG2233	PERMEase
JVX94_16135	COG2363	Small membrane protein
JVX94_16155	COG0463	Glycosyl transferase, family 2
JVX94_16160	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
JVX94_16165	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
JVX94_16170	COG0456	acetyltransferase
JVX94_16175	COG2089	acid synthase
JVX94_16180	COG1861	Spore coat polysaccharide biosynthesis protein F CMP-KDO synthetase
JVX94_16185	COG3980	spore coat polysaccharide biosynthesis protein
JVX94_16190	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
JVX94_16195	COG1088	dTDP-glucose 4,6-dehydratase activity
JVX94_16200	COG1091	dTDP-4-dehydrorhamnose reductase activity
JVX94_16205	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
JVX94_16210	COG1028	Short-chain dehydrogenase reductase Sdr
JVX94_16215	COG0436	Aminotransferase
JVX94_16220	COG0151	Belongs to the GarS family
JVX94_16225	COG1028	Short-chain dehydrogenase reductase Sdr
JVX94_16235	COG0077	Prephenate dehydratase
JVX94_16240	COG2814	Major facilitator Superfamily
JVX94_16245	COG1522	sequence-specific DNA binding
JVX94_16260	COG0280	phosphate acetyltransferase
JVX94_16270	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
JVX94_16300	COG5444	nuclease activity
JVX94_16350	COG4844	belongs to the
JVX94_16355	COG1078	dGTPase activity
JVX94_16360	COG3465	dGTPase activity
JVX94_16370	COG1942	4-Oxalocrotonate Tautomerase
JVX94_16375	COG1994	Peptidase M50
JVX94_16385	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JVX94_16390	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
JVX94_16395	COG0010	Belongs to the arginase family
JVX94_16405	COG4506	Protein conserved in bacteria
JVX94_16410	COG0018	arginyl-trna synthetase
JVX94_16425	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JVX94_16430	COG1132	(ABC) transporter
JVX94_16435	COG1619	proteins homologs of microcin C7 resistance protein MccF
JVX94_16445	COG4294	response to UV
JVX94_16450	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JVX94_16455	COG2181	nitrate reductase activity
JVX94_16455	COG0247	lactate metabolic process
JVX94_16460	COG0183	Belongs to the thiolase family
JVX94_16465	COG1250	3-hydroxyacyl-CoA dehydrogenase
JVX94_16470	COG1960	acyl-CoA dehydrogenase activity
JVX94_16475	COG1960	acyl-CoA dehydrogenase activity
JVX94_16485	COG3343	RNA polymerase activity
JVX94_16490	COG0504	CTP synthase activity
JVX94_16495	COG4821	SIS domain
JVX94_16500	COG2204	response regulator
JVX94_16505	COG0191	fructose-bisphosphate aldolase activity
JVX94_16510	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
JVX94_16515	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
JVX94_16520	COG1494	fructose-1,6-bisphosphatase
JVX94_16525	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
JVX94_16530	COG0254	rRNA binding
JVX94_16535	COG1435	thymidine kinase activity
JVX94_16540	COG0281	malic enzyme
JVX94_16545	COG0679	Auxin Efflux Carrier
JVX94_16550	COG0789	Transcriptional regulator
JVX94_16555	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
JVX94_16560	COG2890	protein-(glutamine-N5) methyltransferase activity
JVX94_16575	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
JVX94_16580	COG0009	L-threonylcarbamoyladenylate synthase
JVX94_16585	COG1971	Probably functions as a manganese efflux pump
JVX94_16590	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
JVX94_16595	COG0698	ribose 5-phosphate isomerase
JVX94_16600	COG4475	Protein of unknown function (DUF436)
JVX94_16605	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
JVX94_16610	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
JVX94_16620	COG0356	it plays a direct role in the translocation of protons across the membrane
JVX94_16625	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
JVX94_16630	COG0711	Component of the F(0) channel, it forms part of the peripheral stalk, linking F(1) to F(0)
JVX94_16635	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
JVX94_16640	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
JVX94_16645	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
JVX94_16650	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
JVX94_16655	COG0355	proton-transporting ATP synthase activity, rotational mechanism
JVX94_16665	COG4836	Membrane
JVX94_16675	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
JVX94_16680	COG2385	sporulation resulting in formation of a cellular spore
JVX94_16685	COG2304	oxidoreductase activity
JVX94_16690	COG2304	oxidoreductase activity
JVX94_16695	COG0243	molybdopterin cofactor binding
JVX94_16700	COG2223	nitrite transmembrane transporter activity
JVX94_16705	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
JVX94_16710	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
JVX94_16715	COG0199	Binds 16S rRNA, required for the assembly of 30S particles and may also be responsible for determining the conformation of the 16S rRNA at the A site
JVX94_16720	COG0523	cobalamin synthesis protein
JVX94_16725	COG0267	Belongs to the bacterial ribosomal protein bL33 family
JVX94_16765	COG1247	-acetyltransferase
JVX94_16770	COG0739	heme binding
JVX94_16775	COG0347	Belongs to the P(II) protein family
JVX94_16780	COG0004	ammonium transporteR
JVX94_16785	COG1126	abc transporter atp-binding protein
JVX94_16790	COG0765	amino acid transport
JVX94_16795	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JVX94_16800	COG0477	Major facilitator Superfamily
JVX94_16805	COG0671	phosphoesterase, PA-phosphatase related
JVX94_16810	COG2814	Major facilitator Superfamily
JVX94_16815	COG1846	Transcriptional regulator
JVX94_16820	COG1609	Transcriptional regulator
JVX94_16825	COG1077	Cell shape determining protein MreB Mrl
JVX94_16830	COG4786	Flagellar basal body rod
JVX94_16835	COG4786	Flagellar basal body rod
JVX94_16840	COG0457	Tetratricopeptide repeat
JVX94_16845	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
JVX94_16850	COG1970	mechanosensitive ion channel activity
JVX94_16865	COG0561	phosphatase activity
JVX94_16870	COG1366	Belongs to the anti-sigma-factor antagonist family
JVX94_16870	COG2202	Pas domain
JVX94_16875	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
JVX94_16880	COG4715	Zinc finger, swim domain protein
JVX94_16890	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
JVX94_16895	COG2059	Chromate
JVX94_16900	COG2059	Chromate
JVX94_16905	COG1522	sequence-specific DNA binding
JVX94_16910	COG3527	Alpha-acetolactate decarboxylase
JVX94_16915	COG0028	Belongs to the TPP enzyme family
JVX94_16920	COG0583	DNA-binding transcription factor activity
JVX94_16925	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
JVX94_16930	COG1879	ABC-type sugar transport system periplasmic component
JVX94_16935	COG1172	Belongs to the binding-protein-dependent transport system permease family
JVX94_16940	COG1129	ABC transporter
JVX94_16945	COG1869	D-ribose catabolic process
JVX94_16950	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JVX94_16955	COG1609	Transcriptional regulator
JVX94_16970	COG0697	spore germination
JVX94_16975	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
JVX94_16985	COG2843	Capsule synthesis protein
JVX94_16995	COG0791	NLP P60 protein
JVX94_17000	COG0561	phosphatase activity
JVX94_17005	COG1316	TRANSCRIPTIONal
JVX94_17010	COG2814	Major facilitator Superfamily
JVX94_17025	COG0814	amino acid
JVX94_17030	COG0697	spore germination
JVX94_17035	COG1028	Short-chain dehydrogenase reductase Sdr
JVX94_17040	COG3717	Catalyzes the isomerization of 5-dehydro-4-deoxy-D- glucuronate to 3-deoxy-D-glycero-2,5-hexodiulosonate
JVX94_17045	COG1609	Transcriptional regulator
JVX94_17050	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JVX94_17055	COG0800	Aldolase
JVX94_17060	COG0454	-acetyltransferase
JVX94_17070	COG2972	Histidine kinase
JVX94_17075	COG2197	response regulator
JVX94_17080	COG1653	transport
JVX94_17085	COG1175	transmembrane transport
JVX94_17095	COG1482	cell wall glycoprotein biosynthetic process
JVX94_17100	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
JVX94_17100	COG0463	Glycosyl transferase, family 2
JVX94_17105	COG4193	domain, Protein
JVX94_17110	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
JVX94_17115	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
JVX94_17120	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
JVX94_17130	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
JVX94_17135	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
JVX94_17145	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
JVX94_17150	COG1181	Belongs to the D-alanine--D-alanine ligase family
JVX94_17160	COG1216	Glycosyl transferase, family 2
JVX94_17165	COG1682	transport, permease protein
JVX94_17170	COG1134	teichoic acid transport
JVX94_17175	COG1210	Utp--glucose-1-phosphate uridylyltransferase
JVX94_17180	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
JVX94_17185	COG1316	TRANSCRIPTIONal
JVX94_17195	COG2247	cell wall binding repeat
JVX94_17195	COG2385	sporulation resulting in formation of a cellular spore
JVX94_17200	COG2247	cell wall binding repeat
JVX94_17200	COG0860	N-Acetylmuramoyl-L-alanine amidase
JVX94_17205	COG0860	N-Acetylmuramoyl-L-alanine amidase
JVX94_17205	COG2247	cell wall binding repeat
JVX94_17220	COG2244	polysaccharide biosynthetic process
JVX94_17225	COG0297	glycogen (starch) synthase activity
JVX94_17225	COG0438	transferase activity, transferring glycosyl groups
JVX94_17230	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
JVX94_17235	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JVX94_17240	COG3307	-O-antigen
JVX94_17245	COG3206	protein involved in exopolysaccharide biosynthesis
JVX94_17250	COG1215	transferase activity, transferring glycosyl groups
JVX94_17255	COG0438	transferase activity, transferring glycosyl groups
JVX94_17260	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
JVX94_17265	COG1316	TRANSCRIPTIONal
JVX94_17270	COG1739	Uncharacterized protein family UPF0029
JVX94_17275	COG4585	Histidine kinase
JVX94_17280	COG2197	response regulator
JVX94_17285	COG1307	EDD domain protein, DegV family
JVX94_17290	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
JVX94_17300	COG1040	competence protein
JVX94_17315	COG3418	PFAM FlgN family protein
JVX94_17320	COG4786	Flagellar basal body rod
JVX94_17320	COG1256	bacterial-type flagellum assembly
JVX94_17325	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JVX94_17335	COG1699	Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum
JVX94_17340	COG1551	Could accelerate the degradation of some genes transcripts potentially through selective RNA binding
JVX94_17345	COG1334	flagellar protein FlaG
JVX94_17350	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
JVX94_17355	COG1516	flagellar protein fliS
JVX94_17370	COG0840	transmembrane signaling receptor activity
JVX94_17375	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
JVX94_17380	COG0653	protein targeting
JVX94_17400	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JVX94_17405	COG2010	Cytochrome c
JVX94_17410	COG2884	Cell division ATP-binding protein ftsE
JVX94_17415	COG2177	Part of the ABC transporter FtsEX involved in
JVX94_17420	COG3883	PFAM NLP P60 protein
JVX94_17420	COG0791	NLP P60 protein
JVX94_17425	COG0730	response to heat
JVX94_17430	COG0793	Belongs to the peptidase S41A family
JVX94_17430	COG3409	Peptidoglycan-binding domain 1 protein
JVX94_17440	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JVX94_17445	COG1733	regulation of RNA biosynthetic process
JVX94_17450	COG0778	Nitroreductase
JVX94_17455	COG1113	amino acid transport
JVX94_17460	COG0463	Glycosyl transferase, family 2
JVX94_17465	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
JVX94_17470	COG5002	protein histidine kinase activity
JVX94_17475	COG0745	RESPONSE REGULATOR receiver
JVX94_17485	COG2814	Major facilitator Superfamily
JVX94_17490	COG1309	transcriptional regulator
JVX94_17495	COG0574	Belongs to the PEP-utilizing enzyme family
JVX94_17495	COG3848	Pyruvate phosphate dikinase
JVX94_17500	COG4897	Protein conserved in bacteria
JVX94_17510	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
JVX94_17525	COG3595	metallopeptidase activity
JVX94_17530	COG1983	PspC domain protein
JVX94_17535	COG1950	PFAM Membrane protein of
JVX94_17540	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
JVX94_17545	COG2188	Transcriptional regulator
JVX94_17550	COG0363	glucosamine-6-phosphate deaminase activity
JVX94_17555	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
JVX94_17560	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
JVX94_17565	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
JVX94_17570	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
JVX94_17575	COG0546	phosphoglycolate phosphatase activity
JVX94_17580	COG0110	maltose O-acetyltransferase activity
JVX94_17585	COG1959	2 iron, 2 sulfur cluster binding
JVX94_17590	COG2910	NAD(P)H-binding
JVX94_17600	COG4990	cell redox homeostasis
JVX94_17605	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
JVX94_17610	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
JVX94_17615	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
JVX94_17620	COG0131	Imidazoleglycerol-phosphate dehydratase
JVX94_17625	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
JVX94_17630	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
JVX94_17635	COG0107	imidazoleglycerol-phosphate synthase activity
JVX94_17640	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
JVX94_17640	COG0140	phosphoribosyl-ATP diphosphatase activity
JVX94_17645	COG0457	Tetratricopeptide repeat
JVX94_17650	COG0791	NLP P60 protein
JVX94_17650	COG3883	PFAM NLP P60 protein
JVX94_17655	COG0492	ferredoxin-NADP+ reductase activity
JVX94_17660	COG1051	belongs to the nudix hydrolase family
JVX94_17665	COG1660	Displays ATPase and GTPase activities
JVX94_17670	COG0391	Required for morphogenesis under gluconeogenic growth conditions
JVX94_17675	COG1481	regulation of sporulation
JVX94_17680	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JVX94_17685	COG2162	N-hydroxyarylamine O-acetyltransferase activity
JVX94_17695	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JVX94_17700	COG0288	reversible hydration of carbon dioxide
JVX94_17705	COG0659	secondary active sulfate transmembrane transporter activity
JVX94_17710	COG1694	Mazg nucleotide pyrophosphohydrolase
JVX94_17715	COG1611	Belongs to the LOG family
JVX94_17720	COG0740	serine-type endopeptidase activity
JVX94_17745	COG1819	glycosyl
JVX94_17755	COG0488	(ABC) transporter
JVX94_17760	COG0726	polysaccharide deacetylase
JVX94_17765	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JVX94_17770	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JVX94_17775	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JVX94_17785	COG1396	sequence-specific DNA binding
JVX94_17790	COG3944	biosynthesis protein
JVX94_17795	COG0489	protein tyrosine kinase activity
JVX94_17800	COG1086	Polysaccharide biosynthesis protein
JVX94_17805	COG0438	transferase activity, transferring glycosyl groups
JVX94_17810	COG1215	transferase activity, transferring glycosyl groups
JVX94_17815	COG0438	transferase activity, transferring glycosyl groups
JVX94_17825	COG1216	Glycosyl transferase, family 2
JVX94_17830	COG5039	Polysaccharide pyruvyl transferase
JVX94_17835	COG2244	polysaccharide biosynthetic process
JVX94_17840	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
JVX94_17845	COG0110	maltose O-acetyltransferase activity
JVX94_17850	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
JVX94_17855	COG0747	negative chemotaxis
JVX94_17860	COG0601	transmembrane transport
JVX94_17865	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JVX94_17870	COG0444	Belongs to the ABC transporter superfamily
JVX94_17875	COG4608	Belongs to the ABC transporter superfamily
JVX94_17880	COG0534	Mate efflux family protein
JVX94_17890	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
JVX94_17895	COG2186	Transcriptional regulator
JVX94_17900	COG3829	transcription factor binding
JVX94_17905	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
JVX94_17910	COG0833	amino acid
JVX94_17915	COG2390	Transcriptional regulator
JVX94_17920	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JVX94_17925	COG0126	phosphoglycerate kinase activity
JVX94_17930	COG0149	triose-phosphate isomerase activity
JVX94_17935	COG0696	Catalyzes the interconversion of 2-phosphoglycerate and 3-phosphoglycerate
JVX94_17940	COG0148	phosphopyruvate hydratase activity
JVX94_17970	COG0456	acetyltransferase
JVX94_17980	COG2095	MarC family integral membrane protein
JVX94_17985	COG1510	regulation of RNA biosynthetic process
JVX94_17990	COG1125	glycine betaine transport
JVX94_17990	COG0517	IMP dehydrogenase activity
JVX94_17995	COG1174	glycine betaine transport
JVX94_18000	COG1732	Glycine betaine
JVX94_18005	COG1174	glycine betaine transport
JVX94_18010	COG1733	regulation of RNA biosynthetic process
JVX94_18015	COG1396	sequence-specific DNA binding
JVX94_18020	COG1396	sequence-specific DNA binding
JVX94_18025	COG1476	TRANSCRIPTIONal
JVX94_18030	COG2002	toxin-antitoxin pair type II binding
JVX94_18035	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
JVX94_18040	COG1647	Serine aminopeptidase, S33
JVX94_18045	COG0557	exoribonuclease II activity
JVX94_18050	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
JVX94_18095	COG1937	Protein conserved in bacteria
JVX94_18100	COG2608	mercury ion transmembrane transporter activity
JVX94_18105	COG2217	Heavy metal translocating P-type atpase
JVX94_18115	COG1027	Aspartate ammonia-lyase
JVX94_18120	COG4191	Histidine kinase
JVX94_18125	COG0784	Response regulator, receiver
JVX94_18130	COG3226	Transcriptional regulator
JVX94_18140	COG0803	Belongs to the bacterial solute-binding protein 9 family
JVX94_18145	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JVX94_18150	COG1121	(ABC) transporter
JVX94_18155	COG2217	Heavy metal translocating P-type atpase
JVX94_18160	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
JVX94_18165	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
JVX94_18170	COG2860	membrane
JVX94_18175	COG0025	NhaP-type Na H and K H
JVX94_18180	COG1940	carbohydrate kinase activity
JVX94_18185	COG0656	L-ascorbic acid biosynthetic process
JVX94_18190	COG4149	molybdate abc transporter
JVX94_18195	COG0725	ABC transporter, periplasmic molybdate-binding protein
JVX94_18200	COG1368	sulfuric ester hydrolase activity
JVX94_18205	COG1988	membrane-bound metal-dependent
JVX94_18220	COG0531	amino acid
JVX94_18225	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JVX94_18230	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JVX94_18235	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JVX94_18240	COG1120	ATPase activity
JVX94_18245	COG0745	RESPONSE REGULATOR receiver
JVX94_18250	COG2205	protein histidine kinase activity
JVX94_18255	COG1904	glucuronate isomerase
JVX94_18260	COG1609	Transcriptional regulator
JVX94_18265	COG0246	Mannitol dehydrogenase
JVX94_18270	COG2721	sulfolactate sulfo-lyase activity
JVX94_18280	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JVX94_18285	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JVX94_18290	COG1120	ATPase activity
JVX94_18295	COG2096	Adenosyltransferase
JVX94_18300	COG0492	ferredoxin-NADP+ reductase activity
JVX94_18305	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JVX94_18310	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JVX94_18320	COG4758	membrane
JVX94_18325	COG1842	Phage shock protein A
JVX94_18335	COG4758	membrane
JVX94_18340	COG4585	Histidine kinase
JVX94_18345	COG2197	response regulator
JVX94_18360	COG0814	amino acid
JVX94_18365	COG0697	spore germination
JVX94_18375	COG0114	fumarate hydratase activity
JVX94_18385	COG1309	transcriptional regulator
JVX94_18395	COG2205	protein histidine kinase activity
JVX94_18395	COG2770	Histidine kinase
JVX94_18400	COG0745	RESPONSE REGULATOR receiver
JVX94_18405	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JVX94_18410	COG1028	Short-chain dehydrogenase reductase Sdr
JVX94_18420	COG1120	ATPase activity
JVX94_18430	COG5577	PFAM Coat F domain
JVX94_18445	COG1024	Enoyl-CoA hydratase
JVX94_18445	COG1250	3-hydroxyacyl-CoA dehydrogenase
JVX94_18450	COG0183	Belongs to the thiolase family
JVX94_18455	COG1960	acyl-CoA dehydrogenase activity
JVX94_18460	COG1393	Belongs to the ArsC family
JVX94_18465	COG0509	glycine decarboxylation via glycine cleavage system
JVX94_18475	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
JVX94_18480	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JVX94_18490	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
JVX94_18495	COG2011	ABC-type metal ion transport system permease component
JVX94_18500	COG1464	Belongs to the NlpA lipoprotein family
JVX94_18505	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JVX94_18515	COG0396	ATPase activity
JVX94_18520	COG0719	Fe-S assembly protein
JVX94_18525	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
JVX94_18530	COG0822	iron-sulfur transferase activity
JVX94_18535	COG0719	Fe-S assembly protein
JVX94_18540	COG1309	transcriptional regulator
JVX94_18545	COG1090	epimerase
JVX94_18550	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
JVX94_18560	COG2311	Membrane
JVX94_18565	COG0745	RESPONSE REGULATOR receiver
JVX94_18570	COG5002	protein histidine kinase activity
JVX94_18570	COG0642	Histidine kinase
JVX94_18590	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JVX94_18595	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JVX94_18600	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JVX94_18610	COG2356	endonuclease I
JVX94_18615	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
JVX94_18620	COG2814	Major facilitator Superfamily
JVX94_18630	COG2140	Oxalate decarboxylase
JVX94_18635	COG2508	Transcriptional regulator
JVX94_18640	COG1801	Protein of unknown function DUF72
JVX94_18645	COG0737	Belongs to the 5'-nucleotidase family
JVX94_18650	COG3377	Domain of unknown function (DUF1805)
JVX94_18665	COG0739	heme binding
JVX94_18670	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
JVX94_18680	COG4470	Protein conserved in bacteria
JVX94_18685	COG2445	Protein of unknown function DUF86
JVX94_18690	COG0647	UMP catabolic process
JVX94_18695	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
JVX94_18700	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
JVX94_18705	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JVX94_18710	COG0460	homoserine dehydrogenase
JVX94_18715	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
JVX94_18720	COG0083	homoserine kinase activity
JVX94_18725	COG4946	Tricorn protease homolog
JVX94_18725	COG1506	peptidase
JVX94_18725	COG0823	Involved in the tonB-independent uptake of proteins
JVX94_18730	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
JVX94_18735	COG4837	Protein of unknown function (DUF1462)
JVX94_18745	COG1252	NADH dehydrogenase
JVX94_18750	COG4844	belongs to the
JVX94_18755	COG0253	Catalyzes the stereoinversion of LL-2,6- diaminoheptanedioate (L,L-DAP) to meso-diaminoheptanedioate (meso- DAP), a precursor of L-lysine and an essential component of the bacterial peptidoglycan
JVX94_18760	COG0316	Belongs to the HesB IscA family
JVX94_18765	COG5504	Zn-dependent protease
JVX94_18770	COG0789	Transcriptional regulator
JVX94_18780	COG0492	ferredoxin-NADP+ reductase activity
JVX94_18785	COG1252	NADH dehydrogenase
JVX94_18800	COG3584	3D domain protein
JVX94_18805	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
JVX94_18810	COG0260	Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N-terminal amino acids from various peptides
JVX94_18815	COG2056	Na+-H+ antiporter family
JVX94_18820	COG4326	sporulation control protein
JVX94_18825	COG1268	BioY protein
JVX94_18830	COG0686	Belongs to the AlaDH PNT family
JVX94_18835	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
JVX94_18835	COG2508	Transcriptional regulator
JVX94_18840	COG4842	Belongs to the WXG100 family
JVX94_18845	COG5417	Belongs to the EsaB family
JVX94_18850	COG4499	WXG100 protein secretion system (Wss), protein YukC
JVX94_18855	COG1674	ftsk spoiiie
JVX94_18855	COG0433	COG0433 Predicted ATPase
JVX94_18860	COG1511	domain protein
JVX94_18870	COG1028	Short-chain dehydrogenase reductase Sdr
JVX94_18875	COG1418	mRNA catabolic process
JVX94_18890	COG0628	permease
JVX94_18910	COG5506	Protein of unknown function (DUF1694)
JVX94_18915	COG1335	isochorismatase
JVX94_18920	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
JVX94_18925	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
JVX94_18940	COG0142	geranyltranstransferase activity
JVX94_18950	COG4585	Histidine kinase
JVX94_18955	COG2197	response regulator
JVX94_18960	COG2050	protein possibly involved in aromatic compounds catabolism
JVX94_18965	COG1320	monovalent cation:proton antiporter activity
JVX94_18970	COG2212	antiporter activity
JVX94_18975	COG1863	multisubunit Na H antiporter MnhE subunit
JVX94_18980	COG0651	ATP synthesis coupled electron transport
JVX94_18985	COG1006	Multisubunit Na H antiporter MnhC subunit
JVX94_18990	COG2111	Na H antiporter
JVX94_18995	COG2111	Na H antiporter
JVX94_18995	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
JVX94_19005	COG3493	citrate carrier protein
JVX94_19010	COG1079	Belongs to the binding-protein-dependent transport system permease family
JVX94_19015	COG4603	Belongs to the binding-protein-dependent transport system permease family
JVX94_19020	COG3845	ABC transporter
JVX94_19025	COG1744	ABC transporter substrate-binding protein PnrA-like
JVX94_19030	COG4565	transcriptional regulatory protein
JVX94_19035	COG3290	protein histidine kinase activity
JVX94_19045	COG3011	Protein conserved in bacteria
JVX94_19050	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JVX94_19055	COG2814	Major facilitator Superfamily
JVX94_19060	COG5018	Exonuclease
JVX94_19075	COG2205	protein histidine kinase activity
JVX94_19080	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
JVX94_19090	COG2267	carboxylic ester hydrolase activity
JVX94_19095	COG1522	sequence-specific DNA binding
JVX94_19100	COG0436	Aminotransferase
JVX94_19105	COG1098	S1 RNA binding domain
JVX94_19110	COG2155	Conserved Protein
JVX94_19115	COG1979	alcohol dehydrogenase
JVX94_19120	COG1979	alcohol dehydrogenase
JVX94_19125	COG0166	Belongs to the GPI family
JVX94_19140	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
JVX94_19150	COG2738	Putative neutral zinc metallopeptidase
JVX94_19155	COG1253	flavin adenine dinucleotide binding
JVX94_19160	COG0432	Pfam Uncharacterised protein family UPF0047
JVX94_19165	COG2070	2-Nitropropane dioxygenase
JVX94_19180	COG0840	transmembrane signaling receptor activity
JVX94_19185	COG0840	transmembrane signaling receptor activity
JVX94_19190	COG0840	transmembrane signaling receptor activity
JVX94_19195	COG0840	transmembrane signaling receptor activity
JVX94_19200	COG0693	protein deglycase activity
JVX94_19205	COG0673	inositol 2-dehydrogenase activity
JVX94_19215	COG0628	permease
JVX94_19230	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
JVX94_19240	COG1396	sequence-specific DNA binding
JVX94_19260	COG4570	Endonuclease that resolves Holliday junction intermediates made during homologous genetic recombination and DNA repair. Exhibits sequence and structure-selective cleavage of four-way DNA junctions, where it introduces symmetrical nicks in two strands of the same polarity at the 5' side of dinucleotides. Corrects the defects in genetic recombination and DNA repair associated with inactivation of ruvAB or ruvC
JVX94_19270	COG1595	DNA-templated transcription, initiation
JVX94_19275	COG5484	DNA packaging
JVX94_19280	COG1783	phage Terminase large subunit
JVX94_19285	COG5518	Phage portal protein
JVX94_19290	COG0338	D12 class N6 adenine-specific DNA methyltransferase
JVX94_19295	COG4653	Phage capsid family
JVX94_19345	COG5280	Phage tail tape measure protein TP901
JVX94_19345	COG5280	Phage tail tape measure protein TP901
JVX94_19345	COG3953	SLT domain
JVX94_19345	COG3953	SLT domain
JVX94_19350	COG1652	LysM domain
JVX94_19355	COG4193	domain, Protein
JVX94_19365	COG3628	GPW Gp25 family protein
JVX94_19370	COG3299	homolog of phage Mu protein gp47
JVX94_19375	COG3778	Protein conserved in bacteria
JVX94_19420	COG5632	N-Acetylmuramoyl-L-alanine amidase
JVX94_19420	COG3409	Peptidoglycan-binding domain 1 protein
JVX94_19435	COG1510	regulation of RNA biosynthetic process
JVX94_19440	COG1012	belongs to the aldehyde dehydrogenase family
JVX94_19445	COG1454	alcohol dehydrogenase
JVX94_19450	COG2318	DinB family
JVX94_19455	COG1585	Membrane protein implicated in regulation of membrane protease activity
JVX94_19460	COG2268	Band 7 protein
JVX94_19465	COG0772	Belongs to the SEDS family
JVX94_19470	COG0772	Belongs to the SEDS family
JVX94_19475	COG3339	Conserved Protein
JVX94_19480	COG1247	-acetyltransferase
JVX94_19485	COG3859	Proton-coupled thiamine transporter YuaJ