locus-tag class description AUL54_00005 PF02811 PHP domain AUL54_00005 PF14579 Helix-hairpin-helix motif AUL54_00005 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AUL54_00005 PF07733 Bacterial DNA polymerase III alpha NTPase domain AUL54_00010 PF06725 3D domain AUL54_00015 PF02223 Thymidylate kinase AUL54_00025 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AUL54_00105 PF07972 NrdI Flavodoxin like AUL54_00110 PF14528 LAGLIDADG-like domain AUL54_00110 PF02867 Ribonucleotide reductase, barrel domain AUL54_00110 PF00317 Ribonucleotide reductase, all-alpha domain AUL54_00110 PF08343 Ribonucleotide reductase N-terminal AUL54_00130 PF00268 Ribonucleotide reductase, small chain AUL54_00135 PF00085 Thioredoxin AUL54_00145 PF00692 dUTPase AUL54_00165 PF00303 Thymidylate synthase AUL54_00170 PF00186 Dihydrofolate reductase AUL54_00200 PF00269 Small, acid-soluble spore proteins, alpha/beta type AUL54_00205 PF00149 Calcineurin-like phosphoesterase AUL54_00245 PF13443 Cro/C1-type HTH DNA-binding domain AUL54_00265 PF00857 Isochorismatase family AUL54_00290 PF02797 Chalcone and stilbene synthases, C-terminal domain AUL54_00290 PF00195 Chalcone and stilbene synthases, N-terminal domain AUL54_00295 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family AUL54_00300 PF00350 Dynamin family AUL54_00305 PF10752 Protein of unknown function (DUF2533) AUL54_00310 PF01367 5'-3' exonuclease, C-terminal SAM fold AUL54_00310 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AUL54_00320 PF13456 Reverse transcriptase-like AUL54_00325 PF02592 Putative vitamin uptake transporter AUL54_00330 PF13456 Reverse transcriptase-like AUL54_00335 PF10782 Zinc-finger AUL54_00340 PF10819 Protein of unknown function (DUF2564) AUL54_00350 PF00313 'Cold-shock' DNA-binding domain AUL54_00355 PF00534 Glycosyl transferases group 1 AUL54_00355 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase AUL54_00360 PF04204 Homoserine O-succinyltransferase AUL54_00365 PF00255 Glutathione peroxidase AUL54_00375 PF13769 Virulence factor AUL54_00375 PF08712 Scaffold protein Nfu/NifU N terminal AUL54_00380 PF00920 Dehydratase family AUL54_00385 PF06491 Disulphide isomerase AUL54_00390 PF04445 Putative SAM-dependent methyltransferase AUL54_00395 PF14005 YpjP-like protein AUL54_00400 PF00303 Thymidylate synthase AUL54_00405 PF00186 Dihydrofolate reductase AUL54_00415 PF03006 Haemolysin-III related AUL54_00420 PF08461 Ribonuclease R winged-helix domain AUL54_00420 PF00158 Sigma-54 interaction domain AUL54_00425 PF00585 C-terminal regulatory domain of Threonine dehydratase AUL54_00425 PF00291 Pyridoxal-phosphate dependent enzyme AUL54_00430 PF10751 Protein of unknown function (DUF2535) AUL54_00435 PF02630 SCO1/SenC AUL54_00440 PF13472 GDSL-like Lipase/Acylhydrolase family AUL54_00445 PF09911 Uncharacterized protein conserved in bacteria (DUF2140) AUL54_00450 PF01047 MarR family AUL54_00455 PF01625 Peptide methionine sulfoxide reductase AUL54_00460 PF01641 SelR domain AUL54_00465 PF02719 Polysaccharide biosynthesis protein AUL54_00470 PF07508 Recombinase AUL54_00470 PF00239 Resolvase, N terminal domain AUL54_00500 PF04740 LXG domain of WXG superfamily AUL54_00500 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH AUL54_00515 PF16219 Domain of unknown function (DUF4879) AUL54_00535 PF18801 response regulator aspartate phosphatase H, N terminal AUL54_00550 PF13411 MerR HTH family regulatory protein AUL54_00555 PF01370 NAD dependent epimerase/dehydratase family AUL54_00560 PF00440 Bacterial regulatory proteins, tetR family AUL54_00565 PF00857 Isochorismatase family AUL54_00570 PF07690 Major Facilitator Superfamily AUL54_00575 PF08485 Polysaccharide biosynthesis protein C-terminal AUL54_00575 PF02719 Polysaccharide biosynthesis protein AUL54_00580 PF02333 Phytase AUL54_00585 PF12996 DUF based on E. rectale Gene description (DUF3880) AUL54_00600 PF00535 Glycosyl transferase family 2 AUL54_00605 PF00583 Acetyltransferase (GNAT) family AUL54_00615 PF06445 GyrI-like small molecule binding domain AUL54_00620 PF00202 Aminotransferase class-III AUL54_00625 PF01144 Coenzyme A transferase AUL54_00630 PF01144 Coenzyme A transferase AUL54_00635 PF07687 Peptidase dimerisation domain AUL54_00635 PF01546 Peptidase family M20/M25/M40 AUL54_00640 PF00583 Acetyltransferase (GNAT) family AUL54_00645 PF12544 Lysine-2,3-aminomutase AUL54_00650 PF14122 YokU-like protein, putative antitoxin AUL54_00655 PF06855 YozE SAM-like fold AUL54_00665 PF01569 PAP2 superfamily AUL54_00670 PF14191 YodL-like AUL54_00675 PF01048 Phosphorylase superfamily AUL54_00680 PF02557 D-alanyl-D-alanine carboxypeptidase AUL54_00690 PF08241 Methyltransferase domain AUL54_00695 PF17820 PDZ domain AUL54_00695 PF03572 Peptidase family S41 AUL54_00695 PF01471 Putative peptidoglycan binding domain AUL54_00700 PF07702 UTRA domain AUL54_00700 PF00392 Bacterial regulatory proteins, gntR family AUL54_00705 PF00232 Glycosyl hydrolase family 1 AUL54_00715 PF00474 Sodium:solute symporter family AUL54_00720 PF11755 Protein of unknown function (DUF3311) AUL54_00725 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AUL54_00730 PF01738 Dienelactone hydrolase family AUL54_00735 PF00881 Nitroreductase family AUL54_00740 PF01638 HxlR-like helix-turn-helix AUL54_00765 PF08830 Protein of unknown function (DUF1806) AUL54_00770 PF02585 GlcNAc-PI de-N-acetylase AUL54_00775 PF01740 STAS domain AUL54_00780 PF01554 MatE AUL54_00785 PF10372 Bacterial membrane-spanning protein N-terminus AUL54_00785 PF02457 DisA bacterial checkpoint controller nucleotide-binding AUL54_00790 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AUL54_00795 PF00877 NlpC/P60 family AUL54_00795 PF01476 LysM domain AUL54_00800 PF00080 Copper/zinc superoxide dismutase (SODC) AUL54_00800 PF13627 Prokaryotic lipoprotein-attachment site AUL54_00805 PF07728 AAA domain (dynein-related subfamily) AUL54_00810 PF00092 von Willebrand factor type A domain AUL54_00815 PF00676 Dehydrogenase E1 component AUL54_00815 PF16870 2-oxoglutarate dehydrogenase C-terminal AUL54_00815 PF02779 Transketolase, pyrimidine binding domain AUL54_00820 PF00364 Biotin-requiring enzyme AUL54_00820 PF02817 e3 binding domain AUL54_00820 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AUL54_00825 PF00753 Metallo-beta-lactamase superfamily AUL54_00830 PF01758 Sodium Bile acid symporter family AUL54_00835 PF00209 Sodium:neurotransmitter symporter family AUL54_00840 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AUL54_00840 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AUL54_00845 PF13249 Squalene-hopene cyclase N-terminal domain AUL54_00845 PF13243 Squalene-hopene cyclase C-terminal domain AUL54_00850 PF00171 Aldehyde dehydrogenase family AUL54_00860 PF08000 Bacterial PH domain AUL54_00875 PF00011 Hsp20/alpha crystallin family AUL54_00890 PF01258 Prokaryotic dksA/traR C4-type zinc finger AUL54_00895 PF02525 Flavodoxin-like fold AUL54_00905 PF00570 HRDC domain AUL54_00905 PF16124 RecQ zinc-binding AUL54_00905 PF09382 RQC domain AUL54_00905 PF00271 Helicase conserved C-terminal domain AUL54_00905 PF00270 DEAD/DEAH box helicase AUL54_00910 PF06725 3D domain AUL54_00910 PF01476 LysM domain AUL54_00920 PF02016 LD-carboxypeptidase N-terminal domain AUL54_00920 PF17676 LD-carboxypeptidase C-terminal domain AUL54_00935 PF04238 Protein of unknown function (DUF420) AUL54_00945 PF01022 Bacterial regulatory protein, arsR family AUL54_00955 PF00753 Metallo-beta-lactamase superfamily AUL54_00960 PF13305 Tetracyclin repressor-like, C-terminal domain AUL54_00960 PF00440 Bacterial regulatory proteins, tetR family AUL54_00965 PF07883 Cupin domain AUL54_00965 PF12833 Helix-turn-helix domain AUL54_00970 PF01588 Putative tRNA binding domain AUL54_01095 PF01464 Transglycosylase SLT domain AUL54_01110 PF12708 Pectate lyase superfamily protein AUL54_01110 PF11962 Peptidase_G2, IMC autoproteolytic cleavage domain AUL54_01130 PF05105 Bacteriophage holin family AUL54_01135 PF01510 N-acetylmuramoyl-L-alanine amidase AUL54_01185 PF00589 Phage integrase family AUL54_01185 PF02899 Phage integrase, N-terminal SAM-like domain AUL54_01190 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH AUL54_01190 PF04740 LXG domain of WXG superfamily AUL54_01220 PF00384 Molybdopterin oxidoreductase AUL54_01220 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AUL54_01220 PF01568 Molydopterin dinucleotide binding domain AUL54_01225 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AUL54_01225 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AUL54_01235 PF07690 Major Facilitator Superfamily AUL54_01245 PF06103 Bacterial protein of unknown function (DUF948) AUL54_01250 PF00106 short chain dehydrogenase AUL54_01255 PF02334 Replication terminator protein AUL54_01260 PF14748 Pyrroline-5-carboxylate reductase dimerisation AUL54_01260 PF03807 NADP oxidoreductase coenzyme F420-dependent AUL54_01265 PF00696 Amino acid kinase family AUL54_01265 PF01472 PUA domain AUL54_01270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AUL54_01270 PF03466 LysR substrate binding domain AUL54_01275 PF01645 Conserved region in glutamate synthase AUL54_01275 PF04898 Glutamate synthase central domain AUL54_01275 PF00310 Glutamine amidotransferases class-II AUL54_01275 PF01493 GXGXG motif AUL54_01280 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AUL54_01280 PF07992 Pyridine nucleotide-disulphide oxidoreductase AUL54_01290 PF00107 Zinc-binding dehydrogenase AUL54_01290 PF08240 Alcohol dehydrogenase GroES-like domain AUL54_01295 PF03466 LysR substrate binding domain AUL54_01295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AUL54_01300 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AUL54_01300 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AUL54_01300 PF03129 Anticodon binding domain AUL54_01300 PF02824 TGS domain AUL54_01310 PF07690 Major Facilitator Superfamily AUL54_01320 PF12728 Helix-turn-helix domain AUL54_01325 PF00589 Phage integrase family AUL54_01335 PF16800 IseA DL-endopeptidase inhibitor AUL54_01340 PF01554 MatE AUL54_01345 PF01263 Aldose 1-epimerase AUL54_01350 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AUL54_01355 PF00550 Phosphopantetheine attachment site AUL54_01355 PF00668 Condensation domain AUL54_01355 PF13193 AMP-binding enzyme C-terminal domain AUL54_01355 PF00501 AMP-binding enzyme AUL54_01360 PF00550 Phosphopantetheine attachment site AUL54_01360 PF13193 AMP-binding enzyme C-terminal domain AUL54_01360 PF00501 AMP-binding enzyme AUL54_01360 PF00668 Condensation domain AUL54_01365 PF00501 AMP-binding enzyme AUL54_01365 PF00550 Phosphopantetheine attachment site AUL54_01365 PF00668 Condensation domain AUL54_01365 PF13193 AMP-binding enzyme C-terminal domain AUL54_01370 PF00668 Condensation domain AUL54_01370 PF00501 AMP-binding enzyme AUL54_01370 PF13193 AMP-binding enzyme C-terminal domain AUL54_01370 PF00550 Phosphopantetheine attachment site AUL54_01375 PF13193 AMP-binding enzyme C-terminal domain AUL54_01375 PF00668 Condensation domain AUL54_01375 PF00550 Phosphopantetheine attachment site AUL54_01375 PF00975 Thioesterase domain AUL54_01375 PF00501 AMP-binding enzyme AUL54_01380 PF07098 Protein of unknown function (DUF1360) AUL54_01385 PF02638 Glycosyl hydrolase-like 10 AUL54_01390 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AUL54_01390 PF02770 Acyl-CoA dehydrogenase, middle domain AUL54_01390 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AUL54_01395 PF13193 AMP-binding enzyme C-terminal domain AUL54_01395 PF00501 AMP-binding enzyme AUL54_01400 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AUL54_01400 PF00289 Biotin carboxylase, N-terminal domain AUL54_01400 PF02785 Biotin carboxylase C-terminal domain AUL54_01405 PF00364 Biotin-requiring enzyme AUL54_01410 PF00682 HMGL-like AUL54_01415 PF00378 Enoyl-CoA hydratase/isomerase AUL54_01420 PF01039 Carboxyl transferase domain AUL54_01425 PF09335 SNARE associated Golgi protein AUL54_01430 PF00483 Nucleotidyl transferase AUL54_01435 PF04138 GtrA-like protein AUL54_01440 PF03744 6-carboxyhexanoate--CoA ligase AUL54_01445 PF00202 Aminotransferase class-III AUL54_01450 PF00155 Aminotransferase class I and II AUL54_01460 PF04055 Radical SAM superfamily AUL54_01460 PF06968 Biotin and Thiamin Synthesis associated domain AUL54_01465 PF00067 Cytochrome P450 AUL54_01475 PF01144 Coenzyme A transferase AUL54_01480 PF01144 Coenzyme A transferase AUL54_01490 PF00698 Acyl transferase domain AUL54_01495 PF00550 Phosphopantetheine attachment site AUL54_01495 PF02801 Beta-ketoacyl synthase, C-terminal domain AUL54_01495 PF00109 Beta-ketoacyl synthase, N-terminal domain AUL54_01495 PF16197 Ketoacyl-synthetase C-terminal extension AUL54_01495 PF00668 Condensation domain AUL54_01495 PF13193 AMP-binding enzyme C-terminal domain AUL54_01495 PF00501 AMP-binding enzyme AUL54_01495 PF00202 Aminotransferase class-III AUL54_01500 PF13193 AMP-binding enzyme C-terminal domain AUL54_01500 PF00501 AMP-binding enzyme AUL54_01500 PF00668 Condensation domain AUL54_01500 PF00550 Phosphopantetheine attachment site AUL54_01505 PF00975 Thioesterase domain AUL54_01505 PF00550 Phosphopantetheine attachment site AUL54_01505 PF00668 Condensation domain AUL54_01505 PF13193 AMP-binding enzyme C-terminal domain AUL54_01505 PF00501 AMP-binding enzyme AUL54_01510 PF04616 Glycosyl hydrolases family 43 AUL54_01510 PF03422 Carbohydrate binding module (family 6) AUL54_01515 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain AUL54_01515 PF17189 Glycosyl hydrolase family 30 beta sandwich domain AUL54_01525 PF00150 Cellulase (glycosyl hydrolase family 5) AUL54_01525 PF00942 Cellulose binding domain AUL54_01540 PF13761 Domain of unknown function (DUF4166) AUL54_01550 PF01235 Sodium:alanine symporter family AUL54_01560 PF00521 DNA gyrase/topoisomerase IV, subunit A AUL54_01560 PF03989 DNA gyrase C-terminal domain, beta-propeller AUL54_01565 PF00204 DNA gyrase B AUL54_01565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AUL54_01565 PF00986 DNA gyrase B subunit, carboxyl terminus AUL54_01565 PF01751 Toprim domain AUL54_01570 PF13380 CoA binding domain AUL54_01575 PF02660 Glycerol-3-phosphate acyltransferase AUL54_01580 PF01521 Iron-sulphur cluster biosynthesis AUL54_01590 PF03061 Thioesterase superfamily AUL54_01600 PF08177 Small acid-soluble spore protein N family AUL54_01605 PF00578 AhpC/TSA family AUL54_01610 PF00694 Aconitase C-terminal domain AUL54_01610 PF00330 Aconitase family (aconitate hydratase) AUL54_01620 PF08179 Small acid-soluble spore protein P family AUL54_01630 PF11084 Protein of unknown function (DUF2621) AUL54_01635 PF07301 Protein of unknown function (DUF1453) AUL54_01640 PF00072 Response regulator receiver domain AUL54_01645 PF02683 Cytochrome C biogenesis protein transmembrane region AUL54_01650 PF09388 Spo0E like sporulation regulatory protein AUL54_01655 PF03672 Uncharacterised protein family (UPF0154) AUL54_01660 PF10747 Sporulation inhibitor of replication protein SirA AUL54_01665 PF00456 Transketolase, thiamine diphosphate binding domain AUL54_01665 PF02780 Transketolase, C-terminal domain AUL54_01665 PF02779 Transketolase, pyrimidine binding domain AUL54_01670 PF05979 Bacterial protein of unknown function (DUF896) AUL54_01675 PF00239 Resolvase, N terminal domain AUL54_01680 PF01476 LysM domain AUL54_01685 PF00717 Peptidase S24-like AUL54_01685 PF01726 LexA DNA binding domain AUL54_01700 PF10710 Protein of unknown function (DUF2512) AUL54_01710 PF05908 Poly-gamma-glutamate hydrolase AUL54_01715 PF00692 dUTPase AUL54_01720 PF12708 Pectate lyase superfamily protein AUL54_01720 PF11962 Peptidase_G2, IMC autoproteolytic cleavage domain AUL54_01730 PF13302 Acetyltransferase (GNAT) domain AUL54_01735 PF18416 N-acetylglucosamine binding protein domain 2 AUL54_01735 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading AUL54_01745 PF13021 Domain of unknown function (DUF3885) AUL54_01755 PF14268 YoaP-like AUL54_01755 PF00583 Acetyltransferase (GNAT) family AUL54_01760 PF17094 Uncharacterised protein family (UPF0715) AUL54_01765 PF13217 Protein of unknown function (DUF4025) AUL54_01775 PF00101 Ribulose bisphosphate carboxylase, small chain AUL54_01780 PF00107 Zinc-binding dehydrogenase AUL54_01780 PF08240 Alcohol dehydrogenase GroES-like domain AUL54_01785 PF05163 DinB family AUL54_01790 PF08279 HTH domain AUL54_01790 PF13280 WYL domain AUL54_01805 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AUL54_01805 PF00391 PEP-utilising enzyme, mobile domain AUL54_01810 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AUL54_01810 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AUL54_01815 PF01261 Xylose isomerase-like TIM barrel AUL54_01820 PF00480 ROK family AUL54_01825 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain AUL54_01825 PF04616 Glycosyl hydrolases family 43 AUL54_01845 PF04740 LXG domain of WXG superfamily AUL54_01860 PF03951 Glutamine synthetase, beta-Grasp domain AUL54_01860 PF00120 Glutamine synthetase, catalytic domain AUL54_01865 PF13411 MerR HTH family regulatory protein AUL54_01870 PF06838 Methionine gamma-lyase AUL54_01875 PF01926 50S ribosome-binding GTPase AUL54_01875 PF13167 GTP-binding GTPase N-terminal AUL54_01875 PF16360 GTP-binding GTPase Middle Region AUL54_01880 PF17866 AAA lid domain AUL54_01880 PF00004 ATPase family associated with various cellular activities (AAA) AUL54_01890 PF05036 Sporulation related domain AUL54_01890 PF01520 N-acetylmuramoyl-L-alanine amidase AUL54_01900 PF00268 Ribonucleotide reductase, small chain AUL54_01905 PF02867 Ribonucleotide reductase, barrel domain AUL54_01905 PF00317 Ribonucleotide reductase, all-alpha domain AUL54_01905 PF08343 Ribonucleotide reductase N-terminal AUL54_01910 PF07972 NrdI Flavodoxin like AUL54_01920 PF14157 YmzC-like protein AUL54_01925 PF17209 Hfq protein AUL54_01935 PF12788 YmaF family AUL54_01945 PF00893 Small Multidrug Resistance protein AUL54_01950 PF00893 Small Multidrug Resistance protein AUL54_01955 PF02566 OsmC-like protein AUL54_01960 PF05908 Poly-gamma-glutamate hydrolase AUL54_01970 PF00082 Subtilase family AUL54_01980 PF06912 Protein of unknown function (DUF1275) AUL54_01985 PF14040 Deoxyribonuclease NucA/NucB AUL54_01990 PF00067 Cytochrome P450 AUL54_01995 PF16197 Ketoacyl-synthetase C-terminal extension AUL54_01995 PF00109 Beta-ketoacyl synthase, N-terminal domain AUL54_01995 PF02801 Beta-ketoacyl synthase, C-terminal domain AUL54_01995 PF08242 Methyltransferase domain AUL54_01995 PF00550 Phosphopantetheine attachment site AUL54_01995 PF14765 Polyketide synthase dehydratase AUL54_01995 PF00975 Thioesterase domain AUL54_02000 PF00550 Phosphopantetheine attachment site AUL54_02000 PF00501 AMP-binding enzyme AUL54_02000 PF00109 Beta-ketoacyl synthase, N-terminal domain AUL54_02000 PF13193 AMP-binding enzyme C-terminal domain AUL54_02000 PF16197 Ketoacyl-synthetase C-terminal extension AUL54_02000 PF00668 Condensation domain AUL54_02000 PF08659 KR domain AUL54_02000 PF02801 Beta-ketoacyl synthase, C-terminal domain AUL54_02000 PF14765 Polyketide synthase dehydratase AUL54_02005 PF00550 Phosphopantetheine attachment site AUL54_02005 PF00550 Phosphopantetheine attachment site AUL54_02005 PF08242 Methyltransferase domain AUL54_02005 PF08659 KR domain AUL54_02005 PF14765 Polyketide synthase dehydratase AUL54_02005 PF16197 Ketoacyl-synthetase C-terminal extension AUL54_02005 PF16197 Ketoacyl-synthetase C-terminal extension AUL54_02005 PF00109 Beta-ketoacyl synthase, N-terminal domain AUL54_02005 PF00109 Beta-ketoacyl synthase, N-terminal domain AUL54_02005 PF02801 Beta-ketoacyl synthase, C-terminal domain AUL54_02005 PF08659 KR domain AUL54_02005 PF08242 Methyltransferase domain AUL54_02005 PF14765 Polyketide synthase dehydratase AUL54_02005 PF02801 Beta-ketoacyl synthase, C-terminal domain AUL54_02010 PF14765 Polyketide synthase dehydratase AUL54_02010 PF08659 KR domain AUL54_02010 PF02801 Beta-ketoacyl synthase, C-terminal domain AUL54_02010 PF00109 Beta-ketoacyl synthase, N-terminal domain AUL54_02010 PF16197 Ketoacyl-synthetase C-terminal extension AUL54_02010 PF00550 Phosphopantetheine attachment site AUL54_02015 PF16197 Ketoacyl-synthetase C-terminal extension AUL54_02015 PF00668 Condensation domain AUL54_02015 PF13193 AMP-binding enzyme C-terminal domain AUL54_02015 PF00109 Beta-ketoacyl synthase, N-terminal domain AUL54_02015 PF00501 AMP-binding enzyme AUL54_02015 PF08659 KR domain AUL54_02015 PF02801 Beta-ketoacyl synthase, C-terminal domain AUL54_02015 PF14765 Polyketide synthase dehydratase AUL54_02015 PF00550 Phosphopantetheine attachment site AUL54_02020 PF00378 Enoyl-CoA hydratase/isomerase AUL54_02025 PF00378 Enoyl-CoA hydratase/isomerase AUL54_02030 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal AUL54_02030 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal AUL54_02035 PF00550 Phosphopantetheine attachment site AUL54_02040 PF00698 Acyl transferase domain AUL54_02045 PF00698 Acyl transferase domain AUL54_02050 PF00698 Acyl transferase domain AUL54_02055 PF00753 Metallo-beta-lactamase superfamily AUL54_02065 PF14449 Pre-toxin TG AUL54_02065 PF04740 LXG domain of WXG superfamily AUL54_02065 PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues AUL54_02095 PF01119 DNA mismatch repair protein, C-terminal domain AUL54_02095 PF08676 MutL C terminal dimerisation domain AUL54_02100 PF01624 MutS domain I AUL54_02100 PF00488 MutS domain V AUL54_02100 PF05190 MutS family domain IV AUL54_02100 PF05192 MutS domain III AUL54_02100 PF05188 MutS domain II AUL54_02105 PF10628 Outer spore coat protein E (CotE) AUL54_02110 PF06133 Control of competence regulator ComK, YlbF/YmcA AUL54_02115 PF01938 TRAM domain AUL54_02115 PF04055 Radical SAM superfamily AUL54_02115 PF00919 Uncharacterized protein family UPF0004 AUL54_02120 PF00155 Aminotransferase class I and II AUL54_02125 PF08240 Alcohol dehydrogenase GroES-like domain AUL54_02125 PF00107 Zinc-binding dehydrogenase AUL54_02130 PF04232 Stage V sporulation protein S (SpoVS) AUL54_02135 PF13277 YmdB-like protein AUL54_02140 PF00013 KH domain AUL54_02140 PF01966 HD domain AUL54_02140 PF12072 Domain of unknown function (DUF3552) AUL54_02145 PF00144 Beta-lactamase AUL54_02150 PF00154 recA bacterial DNA recombination protein AUL54_02155 PF00994 Probable molybdopterin binding domain AUL54_02155 PF18146 Damage-inducible protein CinA KH domain AUL54_02155 PF02464 Competence-damaged protein AUL54_02160 PF01066 CDP-alcohol phosphatidyltransferase AUL54_02165 PF13464 Domain of unknown function (DUF4115) AUL54_02170 PF11868 Protein of unknown function (DUF3388) AUL54_02175 PF11588 Protein of unknown function (DUF3243) AUL54_02185 PF05193 Peptidase M16 inactive domain AUL54_02185 PF00675 Insulinase (Peptidase family M16) AUL54_02190 PF05193 Peptidase M16 inactive domain AUL54_02195 PF03176 MMPL family AUL54_02200 PF01047 MarR family AUL54_02205 PF07690 Major Facilitator Superfamily AUL54_02210 PF07702 UTRA domain AUL54_02210 PF00392 Bacterial regulatory proteins, gntR family AUL54_02215 PF09397 Ftsk gamma domain AUL54_02215 PF01580 FtsK/SpoIIIE family AUL54_02215 PF17854 FtsK alpha domain AUL54_02220 PF14035 YlzJ-like protein AUL54_02225 PF00574 Clp protease AUL54_02230 PF00753 Metallo-beta-lactamase superfamily AUL54_02230 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AUL54_02230 PF17770 Ribonuclease J C-terminal domain AUL54_02235 PF00701 Dihydrodipicolinate synthetase family AUL54_02240 PF13840 ACT domain AUL54_02240 PF00696 Amino acid kinase family AUL54_02245 PF02774 Semialdehyde dehydrogenase, dimerisation domain AUL54_02245 PF01118 Semialdehyde dehydrogenase, NAD binding domain AUL54_02250 PF02441 Flavoprotein AUL54_02255 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AUL54_02255 PF16924 Dipicolinate synthase subunit A N-terminal domain AUL54_02260 PF05239 PRC-barrel domain AUL54_02265 PF05193 Peptidase M16 inactive domain AUL54_02265 PF00675 Insulinase (Peptidase family M16) AUL54_02270 PF01522 Polysaccharide deacetylase AUL54_02275 PF03725 3' exoribonuclease family, domain 2 AUL54_02275 PF00575 S1 RNA binding domain AUL54_02275 PF00013 KH domain AUL54_02275 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AUL54_02275 PF01138 3' exoribonuclease family, domain 1 AUL54_02280 PF00312 Ribosomal protein S15 AUL54_02285 PF06574 FAD synthetase AUL54_02285 PF01687 Riboflavin kinase AUL54_02290 PF16198 tRNA pseudouridylate synthase B C-terminal domain AUL54_02290 PF01509 TruB family pseudouridylate synthase (N terminal domain) AUL54_02295 PF02033 Ribosome-binding factor A AUL54_02300 PF04456 Protein of unknown function (DUF503) AUL54_02305 PF04760 Translation initiation factor IF-2, N-terminal region AUL54_02305 PF11987 Translation-initiation factor 2 AUL54_02305 PF00009 Elongation factor Tu GTP binding domain AUL54_02310 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family AUL54_02315 PF04296 Protein of unknown function (DUF448) AUL54_02320 PF13184 NusA-like KH domain AUL54_02320 PF00575 S1 RNA binding domain AUL54_02320 PF08529 NusA N-terminal domain AUL54_02325 PF02576 RimP N-terminal domain AUL54_02325 PF17384 RimP C-terminal SH3 domain AUL54_02330 PF11490 DNA polymerase III polC-type N-terminus II AUL54_02330 PF07733 Bacterial DNA polymerase III alpha NTPase domain AUL54_02330 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AUL54_02330 PF14579 Helix-hairpin-helix motif AUL54_02330 PF02811 PHP domain AUL54_02330 PF14480 DNA polymerase III polC-type N-terminus I AUL54_02330 PF00929 Exonuclease AUL54_02335 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AUL54_02335 PF04073 Aminoacyl-tRNA editing domain AUL54_02335 PF03129 Anticodon binding domain AUL54_02340 PF17820 PDZ domain AUL54_02340 PF02163 Peptidase family M50 AUL54_02345 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AUL54_02345 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AUL54_02345 PF13288 DXP reductoisomerase C-terminal domain AUL54_02355 PF01255 Putative undecaprenyl diphosphate synthase AUL54_02360 PF01765 Ribosome recycling factor AUL54_02365 PF00696 Amino acid kinase family AUL54_02370 PF00889 Elongation factor TS AUL54_02375 PF00318 Ribosomal protein S2 AUL54_02385 PF04542 Sigma-70 region 2 AUL54_02385 PF04539 Sigma-70 region 3 AUL54_02385 PF04545 Sigma-70, region 4 AUL54_02390 PF03975 CheD chemotactic sensory transduction AUL54_02395 PF04509 CheC-like family AUL54_02400 PF01584 CheW-like domain AUL54_02405 PF01584 CheW-like domain AUL54_02405 PF01627 Hpt domain AUL54_02405 PF07194 P2 response regulator binding domain AUL54_02405 PF02895 Signal transducing histidine kinase, homodimeric domain AUL54_02405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AUL54_02410 PF01339 CheB methylesterase AUL54_02410 PF00072 Response regulator receiver domain AUL54_02415 PF10609 NUBPL iron-transfer P-loop NTPase AUL54_02420 PF00448 SRP54-type protein, GTPase domain AUL54_02425 PF00771 FHIPEP family AUL54_02430 PF01312 FlhB HrpN YscU SpaS Family AUL54_02435 PF01311 Bacterial export proteins, family 1 AUL54_02440 PF01313 Bacterial export proteins, family 3 AUL54_02445 PF00813 FliP family AUL54_02450 PF04347 Flagellar biosynthesis protein, FliO AUL54_02455 PF00072 Response regulator receiver domain AUL54_02460 PF04509 CheC-like family AUL54_02460 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AUL54_02465 PF02154 Flagellar motor switch protein FliM AUL54_02465 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AUL54_02470 PF03748 Flagellar basal body-associated protein FliL AUL54_02475 PF06289 Flagellar and Swarming motility proteins AUL54_02480 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AUL54_02480 PF00460 Flagella basal body rod protein AUL54_02485 PF03963 Flagellar hook capping protein - N-terminal region AUL54_02490 PF02120 Flagellar hook-length control protein FliK AUL54_02495 PF03448 MgtE intracellular N domain AUL54_02500 PF02050 Flagellar FliJ protein AUL54_02505 PF02874 ATP synthase alpha/beta family, beta-barrel domain AUL54_02505 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AUL54_02505 PF18269 T3SS EscN ATPase C-terminal domain AUL54_02510 PF02108 Flagellar assembly protein FliH AUL54_02515 PF14841 FliG middle domain AUL54_02515 PF14842 FliG N-terminal domain AUL54_02515 PF01706 FliG C-terminal domain AUL54_02520 PF08345 Flagellar M-ring protein C-terminal AUL54_02520 PF01514 Secretory protein of YscJ/FliF family AUL54_02525 PF02049 Flagellar hook-basal body complex protein FliE AUL54_02530 PF00460 Flagella basal body rod protein AUL54_02530 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AUL54_02535 PF00460 Flagella basal body rod protein AUL54_02540 PF08222 CodY helix-turn-helix domain AUL54_02540 PF06018 CodY GAF-like domain AUL54_02545 PF00004 ATPase family associated with various cellular activities (AAA) AUL54_02545 PF10431 C-terminal, D2-small domain, of ClpB protein AUL54_02545 PF07724 AAA domain (Cdc48 subfamily) AUL54_02550 PF00227 Proteasome subunit AUL54_02555 PF02899 Phage integrase, N-terminal SAM-like domain AUL54_02555 PF00589 Phage integrase family AUL54_02560 PF01134 Glucose inhibited division protein A AUL54_02565 PF01396 Topoisomerase DNA binding C4 zinc finger AUL54_02565 PF01751 Toprim domain AUL54_02565 PF01131 DNA topoisomerase AUL54_02570 PF02481 DNA recombination-mediator protein A AUL54_02575 PF02629 CoA binding domain AUL54_02575 PF00549 CoA-ligase AUL54_02580 PF08442 ATP-grasp domain AUL54_02580 PF00549 CoA-ligase AUL54_02585 PF01312 FlhB HrpN YscU SpaS Family AUL54_02595 PF01351 Ribonuclease HII AUL54_02600 PF01926 50S ribosome-binding GTPase AUL54_02605 PF01245 Ribosomal protein L19 AUL54_02610 PF01746 tRNA (Guanine-1)-methyltransferase AUL54_02615 PF05239 PRC-barrel domain AUL54_02615 PF01782 RimM N-terminal domain AUL54_02620 PF11068 YlqD protein AUL54_02630 PF00886 Ribosomal protein S16 AUL54_02635 PF00448 SRP54-type protein, GTPase domain AUL54_02635 PF02881 SRP54-type protein, helical bundle domain AUL54_02635 PF02978 Signal peptide binding domain AUL54_02640 PF04297 Putative helix-turn-helix protein, YlxM / p13 like AUL54_02650 PF02881 SRP54-type protein, helical bundle domain AUL54_02650 PF00448 SRP54-type protein, GTPase domain AUL54_02655 PF06470 SMC proteins Flexible Hinge Domain AUL54_02655 PF02463 RecF/RecN/SMC N terminal domain AUL54_02660 PF14622 Ribonuclease-III-like AUL54_02660 PF00035 Double-stranded RNA binding motif AUL54_02665 PF00550 Phosphopantetheine attachment site AUL54_02675 PF00698 Acyl transferase domain AUL54_02680 PF02504 Fatty acid synthesis protein AUL54_02685 PF03061 Thioesterase superfamily AUL54_02690 PF00270 DEAD/DEAH box helicase AUL54_02690 PF00271 Helicase conserved C-terminal domain AUL54_02690 PF17191 RecG wedge domain AUL54_02695 PF03313 Serine dehydratase alpha chain AUL54_02700 PF01842 ACT domain AUL54_02700 PF03315 Serine dehydratase beta chain AUL54_02705 PF02734 DAK2 domain AUL54_02705 PF13684 Dihydroxyacetone kinase family AUL54_02710 PF03780 Asp23 family, cell envelope-related function AUL54_02715 PF00830 Ribosomal L28 family AUL54_02720 PF08183 Stage V sporulation protein family AUL54_02725 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain AUL54_02725 PF04263 Thiamin pyrophosphokinase, catalytic domain AUL54_02730 PF00834 Ribulose-phosphate 3 epimerase family AUL54_02735 PF03193 RsgA GTPase AUL54_02735 PF16745 RsgA N-terminal domain AUL54_02740 PF00069 Protein kinase domain AUL54_02740 PF03793 PASTA domain AUL54_02750 PF04055 Radical SAM superfamily AUL54_02755 PF01029 NusB family AUL54_02755 PF01189 16S rRNA methyltransferase RsmB/F AUL54_02760 PF02911 Formyl transferase, C-terminal domain AUL54_02760 PF00551 Formyl transferase AUL54_02765 PF01327 Polypeptide deformylase AUL54_02770 PF18074 Primosomal protein N C-terminal domain AUL54_02770 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AUL54_02770 PF04851 Type III restriction enzyme, res subunit AUL54_02770 PF17764 3′ DNA-binding domain (3′BD) AUL54_02770 PF00271 Helicase conserved C-terminal domain AUL54_02775 PF04127 DNA / pantothenate metabolism flavoprotein AUL54_02775 PF02441 Flavoprotein AUL54_02780 PF01192 RNA polymerase Rpb6 AUL54_02785 PF00625 Guanylate kinase AUL54_02790 PF04025 Domain of unknown function (DUF370) AUL54_02795 PF08340 Domain of unknown function (DUF1732) AUL54_02795 PF03755 YicC-like family, N-terminal region AUL54_02800 PF00690 Cation transporter/ATPase, N-terminus AUL54_02800 PF00689 Cation transporting ATPase, C-terminus AUL54_02820 PF01903 CbiX AUL54_02825 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AUL54_02835 PF14306 PUA-like domain AUL54_02835 PF01747 ATP-sulfurylase AUL54_02840 PF01384 Phosphate transporter family AUL54_02845 PF01507 Phosphoadenosine phosphosulfate reductase family AUL54_02850 PF00156 Phosphoribosyl transferase domain AUL54_02855 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AUL54_02860 PF01180 Dihydroorotate dehydrogenase AUL54_02865 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B AUL54_02865 PF00175 Oxidoreductase NAD-binding domain AUL54_02870 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AUL54_02870 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AUL54_02870 PF02142 MGS-like domain AUL54_02875 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AUL54_02875 PF00117 Glutamine amidotransferase class-I AUL54_02880 PF01979 Amidohydrolase family AUL54_02885 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AUL54_02885 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AUL54_02890 PF00860 Permease family AUL54_02895 PF00156 Phosphoribosyl transferase domain AUL54_02900 PF01479 S4 domain AUL54_02900 PF00849 RNA pseudouridylate synthase AUL54_02905 PF01252 Signal peptidase (SPase) II AUL54_02910 PF01258 Prokaryotic dksA/traR C4-type zinc finger AUL54_02915 PF00133 tRNA synthetases class I (I, L, M and V) AUL54_02915 PF08264 Anticodon-binding domain of tRNA AUL54_02920 PF05103 DivIVA protein AUL54_02925 PF17774 Putative RNA-binding domain in YlmH AUL54_02925 PF01479 S4 domain AUL54_02930 PF02325 YGGT family AUL54_02935 PF04472 Cell division protein SepF AUL54_02940 PF01168 Alanine racemase, N-terminal domain AUL54_02950 PF05239 PRC-barrel domain AUL54_02955 PF01546 Peptidase family M20/M25/M40 AUL54_02955 PF07687 Peptidase dimerisation domain AUL54_02960 PF00005 ABC transporter AUL54_02965 PF04542 Sigma-70 region 2 AUL54_02965 PF04539 Sigma-70 region 3 AUL54_02965 PF04545 Sigma-70, region 4 AUL54_02970 PF04545 Sigma-70, region 4 AUL54_02970 PF04542 Sigma-70 region 2 AUL54_02975 PF03419 Sporulation factor SpoIIGA AUL54_02980 PF05922 Peptidase inhibitor I9 AUL54_02980 PF00082 Subtilase family AUL54_02985 PF00091 Tubulin/FtsZ family, GTPase domain AUL54_02985 PF12327 FtsZ family, C-terminal domain AUL54_02990 PF02491 SHS2 domain inserted in FTSA AUL54_02995 PF08478 POTRA domain, FtsQ-type AUL54_03000 PF01565 FAD binding domain AUL54_03000 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AUL54_03005 PF04101 Glycosyltransferase family 28 C-terminal domain AUL54_03005 PF03033 Glycosyltransferase family 28 N-terminal domain AUL54_03010 PF01098 Cell cycle protein AUL54_03015 PF02875 Mur ligase family, glutamate ligase domain AUL54_03015 PF08245 Mur ligase middle domain AUL54_03020 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 AUL54_03020 PF00953 Glycosyl transferase family 4 AUL54_03025 PF08245 Mur ligase middle domain AUL54_03025 PF01225 Mur ligase family, catalytic domain AUL54_03025 PF02875 Mur ligase family, glutamate ligase domain AUL54_03030 PF00905 Penicillin binding protein transpeptidase domain AUL54_03030 PF03717 Penicillin-binding Protein dimerisation domain AUL54_03030 PF03793 PASTA domain AUL54_03045 PF01795 MraW methylase family AUL54_03050 PF02381 MraZ protein, putative antitoxin-like AUL54_03055 PF10079 Bacillithiol biosynthesis BshC AUL54_03060 PF02558 Ketopantoate reductase PanE/ApbA AUL54_03060 PF08546 Ketopantoate reductase PanE/ApbA C terminal AUL54_03065 PF00583 Acetyltransferase (GNAT) family AUL54_03075 PF02620 Large ribosomal RNA subunit accumulation protein YceD AUL54_03080 PF05636 HIGH Nucleotidyl Transferase AUL54_03085 PF13180 PDZ domain AUL54_03085 PF05362 Lon protease (S16) C-terminal proteolytic domain AUL54_03090 PF01734 Patatin-like phospholipase AUL54_03095 PF07670 Nucleoside recognition AUL54_03100 PF01467 Cytidylyltransferase-like AUL54_03110 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) AUL54_03115 PF06133 Control of competence regulator ComK, YlbF/YmcA AUL54_03120 PF14003 YlbE-like protein AUL54_03125 PF14071 Putative coat protein AUL54_03130 PF00188 Cysteine-rich secretory protein family AUL54_03130 PF14504 CAP-associated N-terminal AUL54_03135 PF00571 CBS domain AUL54_03140 PF08868 YugN-like family AUL54_03145 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) AUL54_03150 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AUL54_03155 PF00510 Cytochrome c oxidase subunit III AUL54_03160 PF00115 Cytochrome C and Quinol oxidase polypeptide I AUL54_03165 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AUL54_03165 PF00034 Cytochrome c AUL54_03165 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AUL54_03170 PF01040 UbiA prenyltransferase family AUL54_03175 PF02628 Cytochrome oxidase assembly protein AUL54_03180 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AUL54_03180 PF00289 Biotin carboxylase, N-terminal domain AUL54_03180 PF00364 Biotin-requiring enzyme AUL54_03180 PF00682 HMGL-like AUL54_03180 PF02436 Conserved carboxylase domain AUL54_03180 PF02785 Biotin carboxylase C-terminal domain AUL54_03185 PF01098 Cell cycle protein AUL54_03190 PF07408 Protein of unknown function (DUF1507) AUL54_03195 PF04960 Glutaminase AUL54_03205 PF02562 PhoH-like protein AUL54_03205 PF13638 PIN domain AUL54_03210 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) AUL54_03215 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) AUL54_03220 PF14036 YlaH-like protein AUL54_03230 PF17259 Family of unknown function (DUF5325) AUL54_03250 PF13490 Putative zinc-finger AUL54_03255 PF04542 Sigma-70 region 2 AUL54_03255 PF08281 Sigma-70, region 4 AUL54_03270 PF02868 Thermolysin metallopeptidase, alpha-helical domain AUL54_03270 PF03413 Peptidase propeptide and YPEB domain AUL54_03270 PF01447 Thermolysin metallopeptidase, catalytic domain AUL54_03270 PF07504 Fungalysin/Thermolysin Propeptide Motif AUL54_03275 PF00583 Acetyltransferase (GNAT) family AUL54_03280 PF00459 Inositol monophosphatase family AUL54_03290 PF06335 Protein of unknown function (DUF1054) AUL54_03295 PF05256 Uncharacterised protein family (UPF0223) AUL54_03300 PF01276 Orn/Lys/Arg decarboxylase, major domain AUL54_03300 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AUL54_03315 PF07992 Pyridine nucleotide-disulphide oxidoreductase AUL54_03315 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AUL54_03320 PF02817 e3 binding domain AUL54_03320 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AUL54_03320 PF00364 Biotin-requiring enzyme AUL54_03325 PF02780 Transketolase, C-terminal domain AUL54_03325 PF02779 Transketolase, pyrimidine binding domain AUL54_03330 PF00676 Dehydrogenase E1 component AUL54_03335 PF00144 Beta-lactamase AUL54_03335 PF11954 Domain of unknown function (DUF3471) AUL54_03340 PF16197 Ketoacyl-synthetase C-terminal extension AUL54_03340 PF00550 Phosphopantetheine attachment site AUL54_03340 PF00109 Beta-ketoacyl synthase, N-terminal domain AUL54_03340 PF14765 Polyketide synthase dehydratase AUL54_03340 PF00668 Condensation domain AUL54_03340 PF13193 AMP-binding enzyme C-terminal domain AUL54_03340 PF00501 AMP-binding enzyme AUL54_03340 PF02801 Beta-ketoacyl synthase, C-terminal domain AUL54_03340 PF08659 KR domain AUL54_03345 PF14765 Polyketide synthase dehydratase AUL54_03345 PF00550 Phosphopantetheine attachment site AUL54_03345 PF16197 Ketoacyl-synthetase C-terminal extension AUL54_03345 PF00109 Beta-ketoacyl synthase, N-terminal domain AUL54_03345 PF02801 Beta-ketoacyl synthase, C-terminal domain AUL54_03345 PF08659 KR domain AUL54_03350 PF16197 Ketoacyl-synthetase C-terminal extension AUL54_03350 PF00109 Beta-ketoacyl synthase, N-terminal domain AUL54_03350 PF00550 Phosphopantetheine attachment site AUL54_03350 PF08659 KR domain AUL54_03350 PF14765 Polyketide synthase dehydratase AUL54_03350 PF02801 Beta-ketoacyl synthase, C-terminal domain AUL54_03355 PF14765 Polyketide synthase dehydratase AUL54_03355 PF08659 KR domain AUL54_03355 PF02801 Beta-ketoacyl synthase, C-terminal domain AUL54_03355 PF00109 Beta-ketoacyl synthase, N-terminal domain AUL54_03355 PF00550 Phosphopantetheine attachment site AUL54_03355 PF16197 Ketoacyl-synthetase C-terminal extension AUL54_03360 PF14765 Polyketide synthase dehydratase AUL54_03360 PF00109 Beta-ketoacyl synthase, N-terminal domain AUL54_03360 PF16197 Ketoacyl-synthetase C-terminal extension AUL54_03360 PF00550 Phosphopantetheine attachment site AUL54_03360 PF00668 Condensation domain AUL54_03360 PF08659 KR domain AUL54_03360 PF00501 AMP-binding enzyme AUL54_03360 PF02801 Beta-ketoacyl synthase, C-terminal domain AUL54_03360 PF13193 AMP-binding enzyme C-terminal domain AUL54_03365 PF16197 Ketoacyl-synthetase C-terminal extension AUL54_03365 PF00109 Beta-ketoacyl synthase, N-terminal domain AUL54_03365 PF02801 Beta-ketoacyl synthase, C-terminal domain AUL54_03365 PF08659 KR domain AUL54_03365 PF00550 Phosphopantetheine attachment site AUL54_03365 PF14765 Polyketide synthase dehydratase AUL54_03370 PF00668 Condensation domain AUL54_03370 PF13193 AMP-binding enzyme C-terminal domain AUL54_03370 PF00109 Beta-ketoacyl synthase, N-terminal domain AUL54_03370 PF08659 KR domain AUL54_03370 PF16197 Ketoacyl-synthetase C-terminal extension AUL54_03370 PF02801 Beta-ketoacyl synthase, C-terminal domain AUL54_03370 PF00501 AMP-binding enzyme AUL54_03370 PF14765 Polyketide synthase dehydratase AUL54_03370 PF00550 Phosphopantetheine attachment site AUL54_03375 PF00698 Acyl transferase domain AUL54_03375 PF03060 Nitronate monooxygenase AUL54_03380 PF10368 Putative cell-wall binding lipoprotein AUL54_03390 PF01327 Polypeptide deformylase AUL54_03405 PF00753 Metallo-beta-lactamase superfamily AUL54_03405 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AUL54_03405 PF17770 Ribonuclease J C-terminal domain AUL54_03410 PF01979 Amidohydrolase family AUL54_03410 PF13382 Adenine deaminase C-terminal domain AUL54_03415 PF02254 TrkA-N domain AUL54_03415 PF02080 TrkA-C domain AUL54_03420 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like AUL54_03425 PF00512 His Kinase A (phospho-acceptor) domain AUL54_03425 PF00989 PAS fold AUL54_03425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AUL54_03430 PF18277 AbrB C-terminal domain AUL54_03430 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AUL54_03445 PF02073 Thermophilic metalloprotease (M29) AUL54_03450 PF02558 Ketopantoate reductase PanE/ApbA AUL54_03450 PF08546 Ketopantoate reductase PanE/ApbA C terminal AUL54_03455 PF12848 ABC transporter AUL54_03455 PF00005 ABC transporter AUL54_03465 PF10502 Signal peptidase, peptidase S26 AUL54_03470 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AUL54_03470 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AUL54_03475 PF00294 pfkB family carbohydrate kinase AUL54_03480 PF08220 DeoR-like helix-turn-helix domain AUL54_03480 PF00455 DeoR C terminal sensor domain AUL54_03485 PF12704 MacB-like periplasmic core domain AUL54_03485 PF02687 FtsX-like permease family AUL54_03490 PF00005 ABC transporter AUL54_03495 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AUL54_03500 PF04893 Yip1 domain AUL54_03505 PF02597 ThiS family AUL54_03510 PF02391 MoaE protein AUL54_03515 PF03205 Molybdopterin guanine dinucleotide synthesis protein B AUL54_03520 PF00994 Probable molybdopterin binding domain AUL54_03520 PF03454 MoeA C-terminal region (domain IV) AUL54_03520 PF03453 MoeA N-terminal region (domain I and II) AUL54_03525 PF00899 ThiF family AUL54_03530 PF12804 MobA-like NTP transferase domain AUL54_03545 PF00578 AhpC/TSA family AUL54_03550 PF00924 Mechanosensitive ion channel AUL54_03555 PF03698 Uncharacterised protein family (UPF0180) AUL54_03560 PF07687 Peptidase dimerisation domain AUL54_03560 PF01546 Peptidase family M20/M25/M40 AUL54_03565 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal AUL54_03565 PF14602 Hexapeptide repeat of succinyl-transferase AUL54_03565 PF00132 Bacterial transferase hexapeptide (six repeats) AUL54_03570 PF00258 Flavodoxin AUL54_03580 PF00258 Flavodoxin AUL54_03585 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AUL54_03585 PF03466 LysR substrate binding domain AUL54_03595 PF14156 Antirepressor AbbA AUL54_03600 PF04308 Ribonuclease H-like AUL54_03605 PF08796 Protein of unknown function (DUF1797) AUL54_03615 PF00563 EAL domain AUL54_03615 PF10388 EAL-domain associated signalling protein domain AUL54_03630 PF00149 Calcineurin-like phosphoesterase AUL54_03630 PF10518 TAT (twin-arginine translocation) pathway signal sequence AUL54_03635 PF03734 L,D-transpeptidase catalytic domain AUL54_03635 PF01476 LysM domain AUL54_03640 PF07690 Major Facilitator Superfamily AUL54_03645 PF14177 YkyB-like protein AUL54_03650 PF00072 Response regulator receiver domain AUL54_03650 PF01584 CheW-like domain AUL54_03655 PF00155 Aminotransferase class I and II AUL54_03660 PF08447 PAS fold AUL54_03660 PF00512 His Kinase A (phospho-acceptor) domain AUL54_03660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AUL54_03660 PF00989 PAS fold AUL54_03665 PF00905 Penicillin binding protein transpeptidase domain AUL54_03665 PF03717 Penicillin-binding Protein dimerisation domain AUL54_03670 PF00188 Cysteine-rich secretory protein family AUL54_03680 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AUL54_03680 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AUL54_03685 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AUL54_03685 PF00672 HAMP domain AUL54_03685 PF02743 Cache domain AUL54_03695 PF11132 Transcriptional regulator protein (SplA) AUL54_03700 PF00391 PEP-utilising enzyme, mobile domain AUL54_03700 PF05524 PEP-utilising enzyme, N-terminal AUL54_03700 PF02896 PEP-utilising enzyme, TIM barrel domain AUL54_03705 PF00381 PTS HPr component phosphorylation site AUL54_03710 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AUL54_03710 PF00367 phosphotransferase system, EIIB AUL54_03710 PF02378 Phosphotransferase system, EIIC AUL54_03715 PF03123 CAT RNA binding domain AUL54_03715 PF00874 PRD domain AUL54_03720 PF00356 Bacterial regulatory proteins, lacI family AUL54_03720 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AUL54_03725 PF00557 Metallopeptidase family M24 AUL54_03725 PF01321 Creatinase/Prolidase N-terminal domain AUL54_03735 PF00578 AhpC/TSA family AUL54_03740 PF01943 Polysaccharide biosynthesis protein AUL54_03745 PF07486 Cell Wall Hydrolase AUL54_03755 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) AUL54_03760 PF11514 Protein of unknown function (DUF3219) AUL54_03775 PF01638 HxlR-like helix-turn-helix AUL54_03780 PF14489 QueF-like protein AUL54_03785 PF04055 Radical SAM superfamily AUL54_03790 PF01242 6-pyruvoyl tetrahydropterin synthase AUL54_03795 PF06508 Queuosine biosynthesis protein QueC AUL54_03810 PF10431 C-terminal, D2-small domain, of ClpB protein AUL54_03810 PF00004 ATPase family associated with various cellular activities (AAA) AUL54_03810 PF17871 AAA lid domain AUL54_03810 PF07724 AAA domain (Cdc48 subfamily) AUL54_03815 PF01618 MotA/TolQ/ExbB proton channel family AUL54_03820 PF13677 Membrane MotB of proton-channel complex MotA/MotB AUL54_03820 PF00691 OmpA family AUL54_03825 PF01047 MarR family AUL54_03830 PF00512 His Kinase A (phospho-acceptor) domain AUL54_03830 PF02743 Cache domain AUL54_03830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AUL54_03835 PF09388 Spo0E like sporulation regulatory protein AUL54_03840 PF03079 ARD/ARD' family AUL54_03845 PF00596 Class II Aldolase and Adducin N-terminal domain AUL54_03855 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain AUL54_03855 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain AUL54_03860 PF00155 Aminotransferase class I and II AUL54_03865 PF00795 Carbon-nitrogen hydrolase AUL54_03870 PF01636 Phosphotransferase enzyme family AUL54_03875 PF01008 Initiation factor 2 subunit family AUL54_03880 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AUL54_03880 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AUL54_03885 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AUL54_03885 PF13426 PAS domain AUL54_03885 PF13188 PAS domain AUL54_03885 PF00989 PAS fold AUL54_03885 PF00512 His Kinase A (phospho-acceptor) domain AUL54_03890 PF01757 Acyltransferase family AUL54_03895 PF04239 Protein of unknown function (DUF421) AUL54_03900 PF02386 Cation transport protein AUL54_03905 PF01435 Peptidase family M48 AUL54_03910 PF08876 Domain of unknown function (DUF1836) AUL54_03915 PF00269 Small, acid-soluble spore proteins, alpha/beta type AUL54_03920 PF12791 Anti-sigma factor N-terminus AUL54_03925 PF04542 Sigma-70 region 2 AUL54_03930 PF03741 Integral membrane protein TerC family AUL54_03935 PF09335 SNARE associated Golgi protein AUL54_03940 PF00563 EAL domain AUL54_03940 PF03707 Bacterial signalling protein N terminal repeat AUL54_03940 PF00990 Diguanylate cyclase, GGDEF domain AUL54_03945 PF02735 Ku70/Ku80 beta-barrel domain AUL54_03950 PF01068 ATP dependent DNA ligase domain AUL54_03960 PF01047 MarR family AUL54_03970 PF13411 MerR HTH family regulatory protein AUL54_03975 PF03448 MgtE intracellular N domain AUL54_03975 PF01769 Divalent cation transporter AUL54_03975 PF00571 CBS domain AUL54_03980 PF00704 Glycosyl hydrolases family 18 AUL54_03980 PF01476 LysM domain AUL54_03985 PF09819 ABC-type cobalt transport system, permease component AUL54_03990 PF00005 ABC transporter AUL54_03995 PF02361 Cobalt transport protein AUL54_04000 PF01740 STAS domain AUL54_04005 PF00082 Subtilase family AUL54_04010 PF08267 Cobalamin-independent synthase, N-terminal domain AUL54_04010 PF01717 Cobalamin-independent synthase, Catalytic domain AUL54_04020 PF12832 MFS_1 like family AUL54_04025 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AUL54_04035 PF00535 Glycosyl transferase family 2 AUL54_04035 PF13181 Tetratricopeptide repeat AUL54_04050 PF02566 OsmC-like protein AUL54_04055 PF01047 MarR family AUL54_04060 PF02566 OsmC-like protein AUL54_04065 PF00171 Aldehyde dehydrogenase family AUL54_04070 PF00696 Amino acid kinase family AUL54_04070 PF01472 PUA domain AUL54_04075 PF01842 ACT domain AUL54_04075 PF00551 Formyl transferase AUL54_04080 PF00893 Small Multidrug Resistance protein AUL54_04085 PF00893 Small Multidrug Resistance protein AUL54_04090 PF13302 Acetyltransferase (GNAT) domain AUL54_04095 PF03061 Thioesterase superfamily AUL54_04105 PF10282 Lactonase, 7-bladed beta-propeller AUL54_04110 PF00005 ABC transporter AUL54_04110 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AUL54_04115 PF00877 NlpC/P60 family AUL54_04120 PF13378 Enolase C-terminal domain-like AUL54_04120 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AUL54_04125 PF02016 LD-carboxypeptidase N-terminal domain AUL54_04125 PF17676 LD-carboxypeptidase C-terminal domain AUL54_04130 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AUL54_04135 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AUL54_04135 PF00005 ABC transporter AUL54_04140 PF00528 Binding-protein-dependent transport system inner membrane component AUL54_04140 PF12911 N-terminal TM domain of oligopeptide transport permease C AUL54_04145 PF00528 Binding-protein-dependent transport system inner membrane component AUL54_04150 PF04951 D-aminopeptidase AUL54_04155 PF07690 Major Facilitator Superfamily AUL54_04160 PF13180 PDZ domain AUL54_04165 PF00535 Glycosyl transferase family 2 AUL54_04170 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase AUL54_04175 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AUL54_04180 PF13520 Amino acid permease AUL54_04185 PF01865 Protein of unknown function DUF47 AUL54_04190 PF01384 Phosphate transporter family AUL54_04195 PF14171 Toxin SpoIISA, type II toxin-antitoxin system AUL54_04200 PF14185 Antitoxin SpoIISB, type II toxin-antitoxin system AUL54_04205 PF01510 N-acetylmuramoyl-L-alanine amidase AUL54_04205 PF01476 LysM domain AUL54_04205 PF01471 Putative peptidoglycan binding domain AUL54_04210 PF04688 SPP1 phage holin AUL54_04215 PF10779 Haemolysin XhlA AUL54_04225 PF09693 Phage uncharacterised protein (Phage_XkdX) AUL54_04230 PF09636 XkdW protein AUL54_04245 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) AUL54_04250 PF04865 Baseplate J-like protein AUL54_04255 PF10934 Protein of unknown function (DUF2634) AUL54_04260 PF10844 Protein of unknown function (DUF2577) AUL54_04270 PF01476 LysM domain AUL54_04275 PF01464 Transglycosylase SLT domain AUL54_04275 PF01464 Transglycosylase SLT domain AUL54_04275 PF01464 Transglycosylase SLT domain AUL54_04280 PF08890 Phage XkdN-like tail assembly chaperone protein, TAC AUL54_04285 PF09393 Phage tail tube protein AUL54_04290 PF17481 Phage tail sheath protein beta-sandwich domain AUL54_04290 PF17482 Phage tail sheath C-terminal domain AUL54_04290 PF04984 Phage tail sheath protein subtilisin-like domain AUL54_04305 PF04883 Bacteriophage HK97-gp10, putative tail-component AUL54_04310 PF12206 Domain of unknown function (DUF3599) AUL54_04315 PF11436 Protein of unknown function (DUF3199) AUL54_04320 PF05065 Phage capsid family AUL54_04325 PF14550 Putative phage serine protease XkdF AUL54_04330 PF04860 Phage portal protein AUL54_04335 PF04466 Phage terminase large subunit AUL54_04335 PF17288 Terminase RNAseH like domain AUL54_04340 PF10668 Phage terminase small subunit AUL54_04340 PF03592 Terminase small subunit AUL54_04345 PF08281 Sigma-70, region 4 AUL54_04350 PF17356 Phage-like element PBSX protein XtrA AUL54_04360 PF01695 IstB-like ATP binding protein AUL54_04375 PF01381 Helix-turn-helix AUL54_04380 PF06114 IrrE N-terminal-like domain AUL54_04385 PF05908 Poly-gamma-glutamate hydrolase AUL54_04390 PF08000 Bacterial PH domain AUL54_04395 PF01476 LysM domain AUL54_04395 PF01471 Putative peptidoglycan binding domain AUL54_04395 PF01510 N-acetylmuramoyl-L-alanine amidase AUL54_04405 PF18801 response regulator aspartate phosphatase H, N terminal AUL54_04410 PF05163 DinB family AUL54_04415 PF01925 Sulfite exporter TauE/SafE AUL54_04425 PF00356 Bacterial regulatory proteins, lacI family AUL54_04430 PF07992 Pyridine nucleotide-disulphide oxidoreductase AUL54_04435 PF07849 Protein of unknown function (DUF1641) AUL54_04445 PF13536 Putative multidrug resistance efflux transporter AUL54_04450 PF00005 ABC transporter AUL54_04455 PF03649 Uncharacterised protein family (UPF0014) AUL54_04460 PF02602 Uroporphyrinogen-III synthase HemD AUL54_04470 PF04101 Glycosyltransferase family 28 C-terminal domain AUL54_04475 PF00067 Cytochrome P450 AUL54_04480 PF07849 Protein of unknown function (DUF1641) AUL54_04485 PF12838 4Fe-4S dicluster domain AUL54_04485 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AUL54_04485 PF00384 Molybdopterin oxidoreductase AUL54_04485 PF01568 Molydopterin dinucleotide binding domain AUL54_04485 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AUL54_04490 PF14172 Domain of unknown function (DUF4309) AUL54_04495 PF10990 Protein of unknown function (DUF2809) AUL54_04500 PF02308 MgtC family AUL54_04520 PF08220 DeoR-like helix-turn-helix domain AUL54_04520 PF00455 DeoR C terminal sensor domain AUL54_04525 PF00232 Glycosyl hydrolase family 1 AUL54_04530 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AUL54_04535 PF02378 Phosphotransferase system, EIIC AUL54_04535 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AUL54_04540 PF00288 GHMP kinases N terminal domain AUL54_04540 PF08544 GHMP kinases C terminal AUL54_04540 PF10509 Galactokinase galactose-binding signature AUL54_04545 PF16363 GDP-mannose 4,6 dehydratase AUL54_04550 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AUL54_04550 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AUL54_04555 PF07745 Glycosyl hydrolase family 53 AUL54_04560 PF01047 MarR family AUL54_04565 PF07690 Major Facilitator Superfamily AUL54_04570 PF03992 Antibiotic biosynthesis monooxygenase AUL54_04580 PF09639 YjcQ protein AUL54_04630 PF18593 CdiI immunity protein AUL54_04640 PF14154 Domain of unknown function (DUF4306) AUL54_04665 PF01053 Cys/Met metabolism PLP-dependent enzyme AUL54_04670 PF01053 Cys/Met metabolism PLP-dependent enzyme AUL54_04675 PF00756 Putative esterase AUL54_04685 PF13673 Acetyltransferase (GNAT) domain AUL54_04695 PF00005 ABC transporter AUL54_04710 PF00580 UvrD/REP helicase N-terminal domain AUL54_04710 PF13361 UvrD-like helicase C-terminal domain AUL54_04715 PF14069 Stage VI sporulation protein F AUL54_04730 PF07098 Protein of unknown function (DUF1360) AUL54_04735 PF07552 Spore Coat Protein X and V domain AUL54_04745 PF07552 Spore Coat Protein X and V domain AUL54_04750 PF10612 Spore coat protein Z AUL54_04755 PF10612 Spore coat protein Z AUL54_04760 PF14153 Spore coat protein CotO AUL54_04770 PF08543 Phosphomethylpyrimidine kinase AUL54_04775 PF00899 ThiF family AUL54_04780 PF05690 Thiazole biosynthesis protein ThiG AUL54_04785 PF02597 ThiS family AUL54_04790 PF01266 FAD dependent oxidoreductase AUL54_04795 PF02581 Thiamine monophosphate synthase AUL54_04800 PF03070 TENA/THI-4/PQQC family AUL54_04805 PF02254 TrkA-N domain AUL54_04805 PF00999 Sodium/hydrogen exchanger family AUL54_04805 PF02080 TrkA-C domain AUL54_04810 PF00149 Calcineurin-like phosphoesterase AUL54_04815 PF00849 RNA pseudouridylate synthase AUL54_04820 PF01513 ATP-NAD kinase AUL54_04825 PF04607 Region found in RelA / SpoT proteins AUL54_04835 PF01928 CYTH domain AUL54_04840 PF01464 Transglycosylase SLT domain AUL54_04845 PF01152 Bacterial-like globin AUL54_04855 PF08439 Oligopeptidase F AUL54_04855 PF01432 Peptidase family M3 AUL54_04860 PF06054 Competence protein CoiA-like family AUL54_04865 PF05389 Negative regulator of genetic competence (MecA) AUL54_04870 PF03741 Integral membrane protein TerC family AUL54_04875 PF03960 ArsC family AUL54_04880 PF13508 Acetyltransferase (GNAT) domain AUL54_04890 PF00005 ABC transporter AUL54_04890 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AUL54_04895 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AUL54_04895 PF00005 ABC transporter AUL54_04900 PF12911 N-terminal TM domain of oligopeptide transport permease C AUL54_04900 PF00528 Binding-protein-dependent transport system inner membrane component AUL54_04905 PF00528 Binding-protein-dependent transport system inner membrane component AUL54_04910 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AUL54_04915 PF00579 tRNA synthetases class I (W and Y) AUL54_04920 PF12227 Protein of unknown function (DUF3603) AUL54_04925 PF00528 Binding-protein-dependent transport system inner membrane component AUL54_04925 PF12911 N-terminal TM domain of oligopeptide transport permease C AUL54_04930 PF00528 Binding-protein-dependent transport system inner membrane component AUL54_04935 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AUL54_04940 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AUL54_04940 PF00005 ABC transporter AUL54_04945 PF00005 ABC transporter AUL54_04945 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AUL54_04950 PF10026 Predicted Zn-dependent protease (DUF2268) AUL54_04955 PF00109 Beta-ketoacyl synthase, N-terminal domain AUL54_04955 PF02801 Beta-ketoacyl synthase, C-terminal domain AUL54_04960 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AUL54_04960 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AUL54_04970 PF10815 ComZ AUL54_04975 PF02608 ABC transporter substrate-binding protein PnrA-like AUL54_04990 PF11151 Protein of unknown function (DUF2929) AUL54_04995 PF14168 YjzC-like protein AUL54_05000 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AUL54_05000 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AUL54_05005 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AUL54_05005 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AUL54_05010 PF00117 Glutamine amidotransferase class-I AUL54_05010 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AUL54_05015 PF00202 Aminotransferase class-III AUL54_05020 PF00696 Amino acid kinase family AUL54_05025 PF01960 ArgJ family AUL54_05030 PF01118 Semialdehyde dehydrogenase, NAD binding domain AUL54_05030 PF02774 Semialdehyde dehydrogenase, dimerisation domain AUL54_05035 PF07690 Major Facilitator Superfamily AUL54_05040 PF01565 FAD binding domain AUL54_05050 PF01883 Iron-sulfur cluster assembly protein AUL54_05055 PF00326 Prolyl oligopeptidase family AUL54_05065 PF12758 Protein of unknown function (DUF3813) AUL54_05070 PF12690 Intracellular proteinase inhibitor AUL54_05075 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AUL54_05075 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AUL54_05085 PF17783 CvfB-like winged helix domain AUL54_05085 PF13509 S1 domain AUL54_05090 PF04461 Protein of unknown function (DUF520) AUL54_05095 PF02219 Methylenetetrahydrofolate reductase AUL54_05095 PF02574 Homocysteine S-methyltransferase AUL54_05105 PF13599 Pentapeptide repeats (9 copies) AUL54_05110 PF00155 Aminotransferase class I and II AUL54_05110 PF00392 Bacterial regulatory proteins, gntR family AUL54_05115 PF01810 LysE type translocator AUL54_05120 PF05163 DinB family AUL54_05125 PF12833 Helix-turn-helix domain AUL54_05125 PF02311 AraC-like ligand binding domain AUL54_05130 PF01554 MatE AUL54_05140 PF13537 Glutamine amidotransferase domain AUL54_05140 PF00733 Asparagine synthase AUL54_05145 PF10949 Protein of unknown function (DUF2777) AUL54_05150 PF07457 Protein of unknown function (DUF1516) AUL54_05155 PF01557 Fumarylacetoacetate (FAA) hydrolase family AUL54_05160 PF09388 Spo0E like sporulation regulatory protein AUL54_05165 PF10676 Spore germination protein gerPA/gerPF AUL54_05170 PF10803 Spore germination GerPB AUL54_05175 PF10737 Spore germination protein GerPC AUL54_05185 PF10970 Spore germination protein GerPE AUL54_05190 PF10676 Spore germination protein gerPA/gerPF AUL54_05200 PF13476 AAA domain AUL54_05205 PF00149 Calcineurin-like phosphoesterase AUL54_05205 PF12320 Type 5 capsule protein repressor C-terminal domain AUL54_05210 PF13361 UvrD-like helicase C-terminal domain AUL54_05210 PF00580 UvrD/REP helicase N-terminal domain AUL54_05210 PF12705 PD-(D/E)XK nuclease superfamily AUL54_05215 PF13361 UvrD-like helicase C-terminal domain AUL54_05215 PF12705 PD-(D/E)XK nuclease superfamily AUL54_05220 PF04239 Protein of unknown function (DUF421) AUL54_05225 PF02915 Rubrerythrin AUL54_05230 PF00440 Bacterial regulatory proteins, tetR family AUL54_05230 PF08361 MAATS-type transcriptional repressor, C-terminal region AUL54_05235 PF07690 Major Facilitator Superfamily AUL54_05240 PF05145 Transition state regulatory protein AbrB AUL54_05245 PF01047 MarR family AUL54_05250 PF01494 FAD binding domain AUL54_05255 PF10502 Signal peptidase, peptidase S26 AUL54_05260 PF09335 SNARE associated Golgi protein AUL54_05270 PF11755 Protein of unknown function (DUF3311) AUL54_05275 PF00474 Sodium:solute symporter family AUL54_05285 PF05901 Excalibur calcium-binding domain AUL54_05290 PF15493 Domain of unknown function, YrpD AUL54_05295 PF08818 Domain of unknown function (DU1801) AUL54_05300 PF06338 ComK protein AUL54_05305 PF08858 IDEAL domain AUL54_05315 PF01266 FAD dependent oxidoreductase AUL54_05315 PF00355 Rieske [2Fe-2S] domain AUL54_05320 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AUL54_05325 PF02632 BioY family AUL54_05330 PF13193 AMP-binding enzyme C-terminal domain AUL54_05330 PF00501 AMP-binding enzyme AUL54_05335 PF00108 Thiolase, N-terminal domain AUL54_05335 PF02803 Thiolase, C-terminal domain AUL54_05340 PF00300 Histidine phosphatase superfamily (branch 1) AUL54_05345 PF01497 Periplasmic binding protein AUL54_05350 PF05922 Peptidase inhibitor I9 AUL54_05350 PF00082 Subtilase family AUL54_05355 PF01435 Peptidase family M48 AUL54_05355 PF16491 CAAX prenyl protease N-terminal, five membrane helices AUL54_05365 PF13193 AMP-binding enzyme C-terminal domain AUL54_05365 PF00501 AMP-binding enzyme AUL54_05370 PF13460 NAD(P)H-binding AUL54_05375 PF10437 Bacterial lipoate protein ligase C-terminus AUL54_05375 PF03099 Biotin/lipoate A/B protein ligase family AUL54_05380 PF12706 Beta-lactamase superfamily domain AUL54_05385 PF00375 Sodium:dicarboxylate symporter family AUL54_05390 PF05343 M42 glutamyl aminopeptidase AUL54_05400 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AUL54_05400 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AUL54_05410 PF17932 Tetracyclin repressor-like, C-terminal domain AUL54_05410 PF00440 Bacterial regulatory proteins, tetR family AUL54_05425 PF01208 Uroporphyrinogen decarboxylase (URO-D) AUL54_05430 PF00912 Transglycosylase AUL54_05430 PF00905 Penicillin binding protein transpeptidase domain AUL54_05435 PF03992 Antibiotic biosynthesis monooxygenase AUL54_05445 PF07687 Peptidase dimerisation domain AUL54_05445 PF01546 Peptidase family M20/M25/M40 AUL54_05450 PF12787 EcsC protein family AUL54_05455 PF05975 Bacterial ABC transporter protein EcsB AUL54_05460 PF00005 ABC transporter AUL54_05465 PF01230 HIT domain AUL54_05470 PF00266 Aminotransferase class-V AUL54_05475 PF17099 Tryptophan transporter TrpP AUL54_05485 PF12732 YtxH-like protein AUL54_05490 PF01047 MarR family AUL54_05495 PF08963 Protein of unknown function (DUF1878) AUL54_05500 PF11667 Putative zincin peptidase AUL54_05510 PF09680 Family of unknown function AUL54_05520 PF14147 Sporulation protein YhaL AUL54_05525 PF01966 HD domain AUL54_05530 PF13514 AAA domain AUL54_05535 PF00149 Calcineurin-like phosphoesterase AUL54_05545 PF00005 ABC transporter AUL54_05545 PF13732 Domain of unknown function (DUF4162) AUL54_05550 PF14120 YhzD-like protein AUL54_05555 PF00378 Enoyl-CoA hydratase/isomerase AUL54_05565 PF02080 TrkA-C domain AUL54_05570 PF00999 Sodium/hydrogen exchanger family AUL54_05575 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AUL54_05580 PF04055 Radical SAM superfamily AUL54_05590 PF08713 DNA alkylation repair enzyme AUL54_05595 PF06133 Control of competence regulator ComK, YlbF/YmcA AUL54_05600 PF04286 Protein of unknown function (DUF445) AUL54_05605 PF14398 YheC/D like ATP-grasp AUL54_05610 PF14398 YheC/D like ATP-grasp AUL54_05615 PF17277 Family of unknown function (DUF5342) AUL54_05620 PF00269 Small, acid-soluble spore proteins, alpha/beta type AUL54_05625 PF13460 NAD(P)H-binding AUL54_05630 PF00664 ABC transporter transmembrane region AUL54_05630 PF00005 ABC transporter AUL54_05635 PF00005 ABC transporter AUL54_05635 PF00664 ABC transporter transmembrane region AUL54_05640 PF00582 Universal stress protein family AUL54_05650 PF13977 BetI-type transcriptional repressor, C-terminal AUL54_05650 PF00440 Bacterial regulatory proteins, tetR family AUL54_05655 PF01063 Amino-transferase class IV AUL54_05660 PF01522 Polysaccharide deacetylase AUL54_05665 PF02146 Sir2 family AUL54_05670 PF00924 Mechanosensitive ion channel AUL54_05675 PF03009 Glycerophosphoryl diester phosphodiesterase family AUL54_05680 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AUL54_05685 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AUL54_05690 PF01595 Cyclin M transmembrane N-terminal domain AUL54_05690 PF03471 Transporter associated domain AUL54_05690 PF00571 CBS domain AUL54_05700 PF00155 Aminotransferase class I and II AUL54_05705 PF13411 MerR HTH family regulatory protein AUL54_05710 PF00571 CBS domain AUL54_05710 PF03471 Transporter associated domain AUL54_05710 PF01595 Cyclin M transmembrane N-terminal domain AUL54_05715 PF01553 Acyltransferase AUL54_05720 PF04542 Sigma-70 region 2 AUL54_05720 PF08281 Sigma-70, region 4 AUL54_05725 PF13800 Sigma factor regulator N-terminal AUL54_05725 PF13791 Sigma factor regulator C-terminal AUL54_05730 PF17453 Sigma-M inhibitor AUL54_05740 PF00209 Sodium:neurotransmitter symporter family AUL54_05745 PF13520 Amino acid permease AUL54_05760 PF00285 Citrate synthase, C-terminal domain AUL54_05765 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AUL54_05765 PF03466 LysR substrate binding domain AUL54_05770 PF00877 NlpC/P60 family AUL54_05770 PF01476 LysM domain AUL54_05775 PF00245 Alkaline phosphatase AUL54_05780 PF04293 SpoVR like protein AUL54_05785 PF05552 Conserved TM helix AUL54_05790 PF02082 Transcriptional regulator AUL54_05795 PF01476 LysM domain AUL54_05795 PF00877 NlpC/P60 family AUL54_05800 PF13028 Protein of unknown function (DUF3889) AUL54_05805 PF14148 YhdB-like protein AUL54_05810 PF03358 NADPH-dependent FMN reductase AUL54_05820 PF07730 Histidine kinase AUL54_05820 PF13185 GAF domain AUL54_05825 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AUL54_05825 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AUL54_05825 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AUL54_05825 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AUL54_05830 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AUL54_05830 PF01266 FAD dependent oxidoreductase AUL54_05835 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AUL54_05835 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AUL54_05840 PF00230 Major intrinsic protein AUL54_05845 PF04309 Glycerol-3-phosphate responsive antiterminator AUL54_05850 PF00202 Aminotransferase class-III AUL54_05860 PF13419 Haloacid dehalogenase-like hydrolase AUL54_05865 PF00571 CBS domain AUL54_05870 PF17326 Family of unknown function (DUF5365) AUL54_05875 PF00849 RNA pseudouridylate synthase AUL54_05875 PF01479 S4 domain AUL54_05880 PF04203 Sortase domain AUL54_05885 PF00565 Staphylococcal nuclease homologue AUL54_05885 PF00149 Calcineurin-like phosphoesterase AUL54_05885 PF00746 LPXTG cell wall anchor motif AUL54_05885 PF02872 5'-nucleotidase, C-terminal domain AUL54_05890 PF07875 Coat F domain AUL54_05900 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) AUL54_05910 PF00375 Sodium:dicarboxylate symporter family AUL54_05915 PF00990 Diguanylate cyclase, GGDEF domain AUL54_05915 PF07694 5TMR of 5TMR-LYT AUL54_05920 PF00313 'Cold-shock' DNA-binding domain AUL54_05925 PF12679 ABC-2 family transporter protein AUL54_05930 PF00005 ABC transporter AUL54_05935 PF00005 ABC transporter AUL54_05940 PF00392 Bacterial regulatory proteins, gntR family AUL54_05955 PF03358 NADPH-dependent FMN reductase AUL54_05960 PF07690 Major Facilitator Superfamily AUL54_05970 PF01047 MarR family AUL54_05975 PF04285 Protein of unknown function (DUF444) AUL54_05980 PF08298 PrkA AAA domain AUL54_05980 PF06798 PrkA serine protein kinase C-terminal domain AUL54_05990 PF04519 Polymer-forming cytoskeletal AUL54_05995 PF13171 Protein of unknown function (DUF4004) AUL54_06000 PF00588 SpoU rRNA Methylase family AUL54_06005 PF12671 Putative amidase domain AUL54_06010 PF08331 Domain of unknown function (DUF1730) AUL54_06025 PF01381 Helix-turn-helix AUL54_06035 PF00253 Ribosomal protein S14p/S29e AUL54_06045 PF00296 Luciferase-like monooxygenase AUL54_06050 PF00528 Binding-protein-dependent transport system inner membrane component AUL54_06055 PF09084 NMT1/THI5 like AUL54_06060 PF00005 ABC transporter AUL54_06070 PF06628 Catalase-related immune-responsive AUL54_06070 PF00199 Catalase AUL54_06075 PF00005 ABC transporter AUL54_06075 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AUL54_06080 PF00005 ABC transporter AUL54_06080 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AUL54_06085 PF00528 Binding-protein-dependent transport system inner membrane component AUL54_06085 PF12911 N-terminal TM domain of oligopeptide transport permease C AUL54_06090 PF00528 Binding-protein-dependent transport system inner membrane component AUL54_06095 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AUL54_06100 PF13040 Fur-regulated basic protein B AUL54_06105 PF01565 FAD binding domain AUL54_06105 PF08031 Berberine and berberine like AUL54_06110 PF01964 Radical SAM ThiC family AUL54_06110 PF13667 ThiC-associated domain AUL54_06115 PF03575 Peptidase family S51 AUL54_06240 PF14540 Nucleotidyltransferase-like AUL54_06240 PF18576 Helix-turn-helix domain AUL54_06245 PF11023 Zinc-ribbon containing domain AUL54_06250 PF01475 Ferric uptake regulator family AUL54_06255 PF00578 AhpC/TSA family AUL54_06260 PF00202 Aminotransferase class-III AUL54_06265 PF06081 Aromatic acid exporter family member 1 AUL54_06270 PF00664 ABC transporter transmembrane region AUL54_06270 PF00005 ABC transporter AUL54_06275 PF04167 Protein of unknown function (DUF402) AUL54_06280 PF14182 YgaB-like protein AUL54_06285 PF04259 Small, acid-soluble spore protein, gamma-type AUL54_06300 PF14815 NUDIX domain AUL54_06300 PF00730 HhH-GPD superfamily base excision DNA repair protein AUL54_06305 PF18801 response regulator aspartate phosphatase H, N terminal AUL54_06315 PF01510 N-acetylmuramoyl-L-alanine amidase AUL54_06315 PF01471 Putative peptidoglycan binding domain AUL54_06320 PF04688 SPP1 phage holin AUL54_06325 PF10960 BhlA holin family AUL54_06365 PF01464 Transglycosylase SLT domain AUL54_06405 PF00574 Clp protease AUL54_06460 PF08281 Sigma-70, region 4 AUL54_06475 PF00772 DnaB-like helicase N terminal domain AUL54_06475 PF03796 DnaB-like helicase C terminal domain AUL54_06500 PF03374 Phage antirepressor protein KilAC domain AUL54_06500 PF09669 Phage regulatory protein Rha (Phage_pRha) AUL54_06535 PF00589 Phage integrase family AUL54_06535 PF14659 Phage integrase, N-terminal SAM-like domain AUL54_06545 PF04307 LexA-binding, inner membrane-associated putative hydrolase AUL54_06550 PF09586 Bacterial membrane protein YfhO AUL54_06555 PF00535 Glycosyl transferase family 2 AUL54_06560 PF00561 alpha/beta hydrolase fold AUL54_06565 PF13630 SdpI/YhfL protein family AUL54_06570 PF08239 Bacterial SH3 domain AUL54_06575 PF14043 WVELL protein AUL54_06585 PF07690 Major Facilitator Superfamily AUL54_06590 PF08838 Protein of unknown function (DUF1811) AUL54_06595 PF02631 RecX family AUL54_06600 PF01370 NAD dependent epimerase/dehydratase family AUL54_06600 PF08338 Domain of unknown function (DUF1731) AUL54_06605 PF14151 YfhD-like protein AUL54_06610 PF00881 Nitroreductase family AUL54_06615 PF02567 Phenazine biosynthesis-like protein AUL54_06620 PF09924 Uncharacterised conserved protein (DUF2156) AUL54_06620 PF03706 Lysylphosphatidylglycerol synthase TM region AUL54_06625 PF01047 MarR family AUL54_06630 PF07690 Major Facilitator Superfamily AUL54_06635 PF12867 DinB superfamily AUL54_06640 PF01337 Barstar (barnase inhibitor) AUL54_06645 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AUL54_06645 PF00391 PEP-utilising enzyme, mobile domain AUL54_06650 PF01757 Acyltransferase family AUL54_06655 PF02525 Flavodoxin-like fold AUL54_06660 PF10400 Virulence activator alpha C-term AUL54_06660 PF03551 Transcriptional regulator PadR-like family AUL54_06665 PF01040 UbiA prenyltransferase family AUL54_06670 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AUL54_06675 PF07681 DoxX AUL54_06680 PF00664 ABC transporter transmembrane region AUL54_06680 PF00005 ABC transporter AUL54_06685 PF00664 ABC transporter transmembrane region AUL54_06685 PF00005 ABC transporter AUL54_06690 PF12708 Pectate lyase superfamily protein AUL54_06690 PF11962 Peptidase_G2, IMC autoproteolytic cleavage domain AUL54_06695 PF02378 Phosphotransferase system, EIIC AUL54_06695 PF00367 phosphotransferase system, EIIB AUL54_06700 PF01380 SIS domain AUL54_06700 PF01418 Helix-turn-helix domain, rpiR family AUL54_06705 PF02056 Family 4 glycosyl hydrolase AUL54_06705 PF11975 Family 4 glycosyl hydrolase C-terminal domain AUL54_06710 PF08141 Small acid-soluble spore protein H family AUL54_06715 PF01590 GAF domain AUL54_06715 PF00158 Sigma-54 interaction domain AUL54_06715 PF02954 Bacterial regulatory protein, Fis family AUL54_06720 PF07992 Pyridine nucleotide-disulphide oxidoreductase AUL54_06720 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AUL54_06725 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AUL54_06725 PF00364 Biotin-requiring enzyme AUL54_06725 PF02817 e3 binding domain AUL54_06730 PF02779 Transketolase, pyrimidine binding domain AUL54_06730 PF02780 Transketolase, C-terminal domain AUL54_06735 PF00676 Dehydrogenase E1 component AUL54_06745 PF01207 Dihydrouridine synthase (Dus) AUL54_06750 PF14118 YfzA-like protein AUL54_06755 PF01938 TRAM domain AUL54_06755 PF05958 tRNA (Uracil-5-)-methyltransferase AUL54_06760 PF00730 HhH-GPD superfamily base excision DNA repair protein AUL54_06765 PF01544 CorA-like Mg2+ transporter protein AUL54_06775 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AUL54_06775 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AUL54_06780 PF01522 Polysaccharide deacetylase AUL54_06790 PF04055 Radical SAM superfamily AUL54_06790 PF08756 YfkB-like domain AUL54_06795 PF00924 Mechanosensitive ion channel AUL54_06800 PF14167 YfkD-like protein AUL54_06805 PF01699 Sodium/calcium exchanger protein AUL54_06810 PF07690 Major Facilitator Superfamily AUL54_06815 PF03631 Virulence factor BrkB AUL54_06825 PF01451 Low molecular weight phosphotyrosine protein phosphatase AUL54_06830 PF06569 Protein of unknown function (DUF1128) AUL54_06835 PF07690 Major Facilitator Superfamily AUL54_06840 PF01487 Type I 3-dehydroquinase AUL54_06845 PF08501 Shikimate dehydrogenase substrate binding domain AUL54_06845 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AUL54_06850 PF00356 Bacterial regulatory proteins, lacI family AUL54_06855 PF01965 DJ-1/PfpI family AUL54_06860 PF00149 Calcineurin-like phosphoesterase AUL54_06860 PF02872 5'-nucleotidase, C-terminal domain AUL54_06875 PF00881 Nitroreductase family AUL54_06880 PF10676 Spore germination protein gerPA/gerPF AUL54_06885 PF10676 Spore germination protein gerPA/gerPF AUL54_06890 PF00011 Hsp20/alpha crystallin family AUL54_06895 PF09350 Domain of unknown function (DUF1992) AUL54_06900 PF00884 Sulfatase AUL54_06905 PF10787 Uncharacterised protein from bacillus cereus group AUL54_06910 PF02378 Phosphotransferase system, EIIC AUL54_06910 PF00367 phosphotransferase system, EIIB AUL54_06915 PF00557 Metallopeptidase family M24 AUL54_06920 PF11588 Protein of unknown function (DUF3243) AUL54_06925 PF03473 MOSC domain AUL54_06925 PF03475 3-alpha domain AUL54_06930 PF00708 Acylphosphatase AUL54_06935 PF02898 Nitric oxide synthase, oxygenase domain AUL54_06945 PF03600 Citrate transporter AUL54_06950 PF03401 Tripartite tricarboxylate transporter family receptor AUL54_06955 PF08279 HTH domain AUL54_06955 PF00072 Response regulator receiver domain AUL54_06955 PF12431 Transcriptional regulator AUL54_06960 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AUL54_06960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AUL54_06980 PF00939 Sodium:sulfate symporter transmembrane region AUL54_06985 PF00544 Pectate lyase AUL54_06990 PF11181 Heat induced stress protein YflT AUL54_06995 PF11486 Protein of unknown function (DUF3212) AUL54_07000 PF16884 N-terminal domain of oxidoreductase AUL54_07000 PF00107 Zinc-binding dehydrogenase AUL54_07010 PF00270 DEAD/DEAH box helicase AUL54_07010 PF00271 Helicase conserved C-terminal domain AUL54_07015 PF12848 ABC transporter AUL54_07015 PF00005 ABC transporter AUL54_07020 PF07690 Major Facilitator Superfamily AUL54_07025 PF13411 MerR HTH family regulatory protein AUL54_07035 PF00067 Cytochrome P450 AUL54_07040 PF00860 Permease family AUL54_07045 PF00005 ABC transporter AUL54_07045 PF12848 ABC transporter AUL54_07045 PF16326 ABC transporter C-terminal domain AUL54_07050 PF13181 Tetratricopeptide repeat AUL54_07050 PF00535 Glycosyl transferase family 2 AUL54_07060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AUL54_07065 PF00171 Aldehyde dehydrogenase family AUL54_07070 PF13520 Amino acid permease AUL54_07075 PF07690 Major Facilitator Superfamily AUL54_07080 PF03407 Nucleotide-diphospho-sugar transferase AUL54_07085 PF00535 Glycosyl transferase family 2 AUL54_07090 PF03407 Nucleotide-diphospho-sugar transferase AUL54_07095 PF16363 GDP-mannose 4,6 dehydratase AUL54_07100 PF00483 Nucleotidyl transferase AUL54_07105 PF00884 Sulfatase AUL54_07110 PF00258 Flavodoxin AUL54_07110 PF00175 Oxidoreductase NAD-binding domain AUL54_07110 PF00067 Cytochrome P450 AUL54_07110 PF00667 FAD binding domain AUL54_07115 PF13037 Domain of unknown function (DUF3898) AUL54_07115 PF13039 Protein of unknown function (DUF3900) AUL54_07120 PF01494 FAD binding domain AUL54_07125 PF01047 MarR family AUL54_07130 PF01027 Inhibitor of apoptosis-promoting Bax1 AUL54_07135 PF01687 Riboflavin kinase AUL54_07140 PF01740 STAS domain AUL54_07140 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain AUL54_07145 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AUL54_07150 PF03992 Antibiotic biosynthesis monooxygenase AUL54_07155 PF04239 Protein of unknown function (DUF421) AUL54_07165 PF00583 Acetyltransferase (GNAT) family AUL54_07170 PF05067 Manganese containing catalase AUL54_07175 PF12652 CotJB protein AUL54_07180 PF11007 Spore coat associated protein JA (CotJA) AUL54_07190 PF01709 Transcriptional regulator AUL54_07195 PF04740 LXG domain of WXG superfamily AUL54_07200 PF04634 Protein of unknown function, DUF600 AUL54_07205 PF04634 Protein of unknown function, DUF600 AUL54_07215 PF00069 Protein kinase domain AUL54_07225 PF01938 TRAM domain AUL54_07225 PF05958 tRNA (Uracil-5-)-methyltransferase AUL54_07230 PF00781 Diacylglycerol kinase catalytic domain AUL54_07235 PF00873 AcrB/AcrD/AcrF family AUL54_07240 PF00440 Bacterial regulatory proteins, tetR family AUL54_07245 PF02637 GatB domain AUL54_07245 PF02934 GatB/GatE catalytic domain AUL54_07250 PF01425 Amidase AUL54_07255 PF02686 Glu-tRNAGln amidotransferase C subunit AUL54_07260 PF00474 Sodium:solute symporter family AUL54_07265 PF02308 MgtC family AUL54_07270 PF01636 Phosphotransferase enzyme family AUL54_07275 PF07537 CamS sex pheromone cAM373 precursor AUL54_07280 PF01653 NAD-dependent DNA ligase adenylation domain AUL54_07280 PF00533 BRCA1 C Terminus (BRCT) domain AUL54_07280 PF03120 NAD-dependent DNA ligase OB-fold domain AUL54_07280 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AUL54_07280 PF12826 Helix-hairpin-helix motif AUL54_07285 PF13361 UvrD-like helicase C-terminal domain AUL54_07285 PF00580 UvrD/REP helicase N-terminal domain AUL54_07290 PF01884 PcrB family AUL54_07295 PF01645 Conserved region in glutamate synthase AUL54_07300 PF01371 Trp repressor protein AUL54_07305 PF11258 Protein of unknown function (DUF3048) N-terminal domain AUL54_07305 PF17479 Protein of unknown function (DUF3048) C-terminal domain AUL54_07310 PF01979 Amidohydrolase family AUL54_07310 PF13382 Adenine deaminase C-terminal domain AUL54_07315 PF11127 Protein of unknown function (DUF2892) AUL54_07320 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AUL54_07320 PF02844 Phosphoribosylglycinamide synthetase, N domain AUL54_07320 PF02843 Phosphoribosylglycinamide synthetase, C domain AUL54_07325 PF01808 AICARFT/IMPCHase bienzyme AUL54_07325 PF02142 MGS-like domain AUL54_07330 PF00551 Formyl transferase AUL54_07335 PF00586 AIR synthase related protein, N-terminal domain AUL54_07335 PF02769 AIR synthase related protein, C-terminal domain AUL54_07340 PF00156 Phosphoribosyl transferase domain AUL54_07345 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AUL54_07345 PF02769 AIR synthase related protein, C-terminal domain AUL54_07345 PF00586 AIR synthase related protein, N-terminal domain AUL54_07355 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase AUL54_07360 PF01259 SAICAR synthetase AUL54_07365 PF00206 Lyase AUL54_07365 PF10397 Adenylosuccinate lyase C-terminus AUL54_07370 PF02222 ATP-grasp domain AUL54_07370 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AUL54_07375 PF00731 AIR carboxylase AUL54_07380 PF14044 NETI protein AUL54_07385 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AUL54_07390 PF13076 Fur-regulated basic protein A AUL54_07400 PF00860 Permease family AUL54_07415 PF02540 NAD synthase AUL54_07415 PF00958 GMP synthase C terminal domain AUL54_07415 PF00117 Glutamine amidotransferase class-I AUL54_07420 PF01841 Transglutaminase-like superfamily AUL54_07420 PF13559 Domain of unknown function (DUF4129) AUL54_07420 PF11992 Domain of unknown function (DUF3488) AUL54_07425 PF01882 Protein of unknown function DUF58 AUL54_07430 PF07726 ATPase family associated with various cellular activities (AAA) AUL54_07430 PF17863 AAA lid domain AUL54_07445 PF01177 Asp/Glu/Hydantoin racemase AUL54_07455 PF07478 D-ala D-ala ligase C-terminus AUL54_07470 PF00152 tRNA synthetases class II (D, K and N) AUL54_07470 PF01336 OB-fold nucleic acid binding domain AUL54_07475 PF00324 Amino acid permease AUL54_07480 PF07731 Multicopper oxidase AUL54_07480 PF07732 Multicopper oxidase AUL54_07480 PF00394 Multicopper oxidase AUL54_07485 PF14169 Cold-inducible protein YdjO AUL54_07490 PF07676 WD40-like Beta Propeller Repeat AUL54_07495 PF03330 Lytic transglycolase AUL54_07500 PF00107 Zinc-binding dehydrogenase AUL54_07500 PF08240 Alcohol dehydrogenase GroES-like domain AUL54_07505 PF08281 Sigma-70, region 4 AUL54_07505 PF04542 Sigma-70 region 2 AUL54_07510 PF11738 Protein of unknown function (DUF3298) AUL54_07510 PF13739 Deacetylase PdaC AUL54_07515 PF01757 Acyltransferase family AUL54_07520 PF13421 SPFH domain-Band 7 family AUL54_07525 PF04536 TPM domain AUL54_07530 PF08271 TFIIB zinc-binding AUL54_07535 PF04012 PspA/IM30 family AUL54_07540 PF14154 Domain of unknown function (DUF4306) AUL54_07545 PF00294 pfkB family carbohydrate kinase AUL54_07555 PF08240 Alcohol dehydrogenase GroES-like domain AUL54_07555 PF00107 Zinc-binding dehydrogenase AUL54_07560 PF13176 Tetratricopeptide repeat AUL54_07560 PF00931 NB-ARC domain AUL54_07575 PF00118 TCP-1/cpn60 chaperonin family AUL54_07580 PF00166 Chaperonin 10 Kd subunit AUL54_07585 PF02517 CPBP intramembrane metalloprotease AUL54_07590 PF14146 Domain of unknown function (DUF4305) AUL54_07595 PF00902 Sec-independent protein translocase protein (TatC) AUL54_07600 PF02416 mttA/Hcf106 family AUL54_07605 PF02629 CoA binding domain AUL54_07605 PF06971 Putative DNA-binding protein N-terminus AUL54_07610 PF01967 MoaC family AUL54_07615 PF00005 ABC transporter AUL54_07615 PF16326 ABC transporter C-terminal domain AUL54_07615 PF12848 ABC transporter AUL54_07620 PF00814 Glycoprotease family AUL54_07625 PF00583 Acetyltransferase (GNAT) family AUL54_07630 PF00814 Glycoprotease family AUL54_07635 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AUL54_07640 PF00586 AIR synthase related protein, N-terminal domain AUL54_07640 PF02769 AIR synthase related protein, C-terminal domain AUL54_07680 PF00083 Sugar (and other) transporter AUL54_07685 PF08240 Alcohol dehydrogenase GroES-like domain AUL54_07685 PF00107 Zinc-binding dehydrogenase AUL54_07690 PF08327 Activator of Hsp90 ATPase homolog 1-like protein AUL54_07700 PF13520 Amino acid permease AUL54_07705 PF17934 Tetracyclin repressor-like, C-terminal domain AUL54_07705 PF00440 Bacterial regulatory proteins, tetR family AUL54_07710 PF00893 Small Multidrug Resistance protein AUL54_07715 PF00893 Small Multidrug Resistance protein AUL54_07720 PF07690 Major Facilitator Superfamily AUL54_07725 PF07729 FCD domain AUL54_07725 PF00392 Bacterial regulatory proteins, gntR family AUL54_07730 PF07690 Major Facilitator Superfamily AUL54_07735 PF07563 Protein of unknown function (DUF1541) AUL54_07740 PF11954 Domain of unknown function (DUF3471) AUL54_07740 PF00144 Beta-lactamase AUL54_07755 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase AUL54_07760 PF00392 Bacterial regulatory proteins, gntR family AUL54_07760 PF07729 FCD domain AUL54_07765 PF00180 Isocitrate/isopropylmalate dehydrogenase AUL54_07770 PF00561 alpha/beta hydrolase fold AUL54_07775 PF00293 NUDIX domain AUL54_07780 PF00583 Acetyltransferase (GNAT) family AUL54_07785 PF01925 Sulfite exporter TauE/SafE AUL54_07795 PF00109 Beta-ketoacyl synthase, N-terminal domain AUL54_07795 PF02801 Beta-ketoacyl synthase, C-terminal domain AUL54_07800 PF07690 Major Facilitator Superfamily AUL54_07805 PF00465 Iron-containing alcohol dehydrogenase AUL54_07810 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AUL54_07810 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AUL54_07815 PF13302 Acetyltransferase (GNAT) domain AUL54_07825 PF07722 Peptidase C26 AUL54_07830 PF03176 MMPL family AUL54_07835 PF00072 Response regulator receiver domain AUL54_07835 PF00196 Bacterial regulatory proteins, luxR family AUL54_07840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AUL54_07840 PF07730 Histidine kinase AUL54_07845 PF14602 Hexapeptide repeat of succinyl-transferase AUL54_07845 PF12464 Maltose acetyltransferase AUL54_07855 PF07690 Major Facilitator Superfamily AUL54_07865 PF07875 Coat F domain AUL54_07870 PF08240 Alcohol dehydrogenase GroES-like domain AUL54_07870 PF00107 Zinc-binding dehydrogenase AUL54_07870 PF13823 Alcohol dehydrogenase GroES-associated AUL54_07880 PF07875 Coat F domain AUL54_07890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AUL54_07890 PF00512 His Kinase A (phospho-acceptor) domain AUL54_07895 PF00072 Response regulator receiver domain AUL54_07895 PF00486 Transcriptional regulatory protein, C terminal AUL54_07915 PF00392 Bacterial regulatory proteins, gntR family AUL54_07915 PF00155 Aminotransferase class I and II AUL54_07925 PF13411 MerR HTH family regulatory protein AUL54_07930 PF08240 Alcohol dehydrogenase GroES-like domain AUL54_07930 PF00107 Zinc-binding dehydrogenase AUL54_07945 PF12867 DinB superfamily AUL54_07950 PF00583 Acetyltransferase (GNAT) family AUL54_07955 PF07883 Cupin domain AUL54_07965 PF16916 Dimerisation domain of Zinc Transporter AUL54_07965 PF01545 Cation efflux family AUL54_07975 PF08031 Berberine and berberine like AUL54_07975 PF01565 FAD binding domain AUL54_07990 PF07883 Cupin domain AUL54_07995 PF01734 Patatin-like phospholipase AUL54_08000 PF07690 Major Facilitator Superfamily AUL54_08005 PF01047 MarR family AUL54_08005 PF00583 Acetyltransferase (GNAT) family AUL54_08025 PF00155 Aminotransferase class I and II AUL54_08030 PF07690 Major Facilitator Superfamily AUL54_08040 PF01925 Sulfite exporter TauE/SafE AUL54_08050 PF07690 Major Facilitator Superfamily AUL54_08055 PF07690 Major Facilitator Superfamily AUL54_08060 PF01568 Molydopterin dinucleotide binding domain AUL54_08060 PF00384 Molybdopterin oxidoreductase AUL54_08060 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AUL54_08065 PF03466 LysR substrate binding domain AUL54_08065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AUL54_08070 PF02559 CarD-like/TRCF domain AUL54_08075 PF00313 'Cold-shock' DNA-binding domain AUL54_08080 PF13460 NAD(P)H-binding AUL54_08085 PF02082 Transcriptional regulator AUL54_08090 PF01575 MaoC like domain AUL54_08095 PF14729 Domain of unknown function with cystatin-like fold (DUF4467) AUL54_08100 PF01047 MarR family AUL54_08105 PF02566 OsmC-like protein AUL54_08110 PF07859 alpha/beta hydrolase fold AUL54_08125 PF00561 alpha/beta hydrolase fold AUL54_08130 PF02525 Flavodoxin-like fold AUL54_08135 PF02525 Flavodoxin-like fold AUL54_08140 PF02082 Transcriptional regulator AUL54_08150 PF14729 Domain of unknown function with cystatin-like fold (DUF4467) AUL54_08155 PF18801 response regulator aspartate phosphatase H, N terminal AUL54_08160 PF00271 Helicase conserved C-terminal domain AUL54_08170 PF14729 Domain of unknown function with cystatin-like fold (DUF4467) AUL54_08180 PF00877 NlpC/P60 family AUL54_08190 PF08960 Domain of unknown function (DUF1874) AUL54_08200 PF12648 TcpE family AUL54_08210 PF12642 Conjugative transposon protein TcpC AUL54_08240 PF02486 Replication initiation factor AUL54_08240 PF18106 Rolling Circle replication initiation protein N-terminal domain AUL54_08250 PF06125 Bacterial protein of unknown function (DUF961) AUL54_08270 PF01381 Helix-turn-helix AUL54_08275 PF06114 IrrE N-terminal-like domain AUL54_08280 PF14659 Phage integrase, N-terminal SAM-like domain AUL54_08280 PF00589 Phage integrase family AUL54_08320 PF10263 SprT-like family AUL54_08325 PF16921 Tex protein YqgF-like domain AUL54_08325 PF09371 Tex-like protein N-terminal domain AUL54_08325 PF17674 HHH domain AUL54_08325 PF00575 S1 RNA binding domain AUL54_08330 PF07228 Stage II sporulation protein E (SpoIIE) AUL54_08335 PF04542 Sigma-70 region 2 AUL54_08335 PF04539 Sigma-70 region 3 AUL54_08335 PF04545 Sigma-70, region 4 AUL54_08340 PF13581 Histidine kinase-like ATPase domain AUL54_08345 PF01740 STAS domain AUL54_08350 PF07228 Stage II sporulation protein E (SpoIIE) AUL54_08350 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain AUL54_08355 PF13581 Histidine kinase-like ATPase domain AUL54_08360 PF01740 STAS domain AUL54_08365 PF08678 Rsbr N terminal AUL54_08365 PF01740 STAS domain AUL54_08370 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system AUL54_08375 PF01402 Ribbon-helix-helix protein, copG family AUL54_08380 PF01168 Alanine racemase, N-terminal domain AUL54_08380 PF00842 Alanine racemase, C-terminal domain AUL54_08390 PF01648 4'-phosphopantetheinyl transferase superfamily AUL54_08395 PF01694 Rhomboid family AUL54_08400 PF03703 Bacterial PH domain AUL54_08405 PF03703 Bacterial PH domain AUL54_08410 PF00270 DEAD/DEAH box helicase AUL54_08410 PF00271 Helicase conserved C-terminal domain AUL54_08415 PF08245 Mur ligase middle domain AUL54_08415 PF01225 Mur ligase family, catalytic domain AUL54_08415 PF02875 Mur ligase family, glutamate ligase domain AUL54_08420 PF07478 D-ala D-ala ligase C-terminus AUL54_08420 PF01820 D-ala D-ala ligase N-terminus AUL54_08425 PF00085 Thioredoxin AUL54_08430 PF01545 Cation efflux family AUL54_08430 PF16916 Dimerisation domain of Zinc Transporter AUL54_08440 PF08028 Acyl-CoA dehydrogenase, C-terminal domain AUL54_08440 PF02770 Acyl-CoA dehydrogenase, middle domain AUL54_08440 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AUL54_08455 PF00005 ABC transporter AUL54_08460 PF01594 AI-2E family transporter AUL54_08465 PF00375 Sodium:dicarboxylate symporter family AUL54_08470 PF08279 HTH domain AUL54_08470 PF00072 Response regulator receiver domain AUL54_08475 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AUL54_08475 PF17203 Single cache domain 3 AUL54_08475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AUL54_08480 PF03480 Bacterial extracellular solute-binding protein, family 7 AUL54_08485 PF05067 Manganese containing catalase AUL54_08490 PF16291 Domain of unknown function (DUF4937 AUL54_08495 PF07883 Cupin domain AUL54_08500 PF10685 Stress-induced bacterial acidophilic repeat motif AUL54_08500 PF00477 Small hydrophilic plant seed protein AUL54_08505 PF12787 EcsC protein family AUL54_08510 PF00893 Small Multidrug Resistance protein AUL54_08515 PF17314 Family of unknown function (DUF5360) AUL54_08520 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) AUL54_08535 PF01566 Natural resistance-associated macrophage protein AUL54_08570 PF00205 Thiamine pyrophosphate enzyme, central domain AUL54_08570 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AUL54_08570 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AUL54_08575 PF00293 NUDIX domain AUL54_08580 PF13520 Amino acid permease AUL54_08585 PF03170 Bacterial cellulose synthase subunit AUL54_08595 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) AUL54_08600 PF00990 Diguanylate cyclase, GGDEF domain AUL54_08610 PF01751 Toprim domain AUL54_08610 PF01131 DNA topoisomerase AUL54_08615 PF01037 Lrp/AsnC ligand binding domain AUL54_08620 PF12823 Domain of unknown function (DUF3817) AUL54_08625 PF10997 Alternate to MurJ AUL54_08630 PF16242 Pyridoxamine 5'-phosphate oxidase like AUL54_08635 PF13302 Acetyltransferase (GNAT) domain AUL54_08650 PF00501 AMP-binding enzyme AUL54_08650 PF13193 AMP-binding enzyme C-terminal domain AUL54_08655 PF00874 PRD domain AUL54_08655 PF08279 HTH domain AUL54_08655 PF05043 Mga helix-turn-helix domain AUL54_08655 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AUL54_08655 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AUL54_08660 PF00248 Aldo/keto reductase family AUL54_08665 PF05223 NTF2-like N-terminal transpeptidase domain AUL54_08665 PF03717 Penicillin-binding Protein dimerisation domain AUL54_08665 PF00905 Penicillin binding protein transpeptidase domain AUL54_08670 PF03992 Antibiotic biosynthesis monooxygenase AUL54_08675 PF13129 Protein of unknown function (DUF3953) AUL54_08680 PF13472 GDSL-like Lipase/Acylhydrolase family AUL54_08685 PF09339 IclR helix-turn-helix domain AUL54_08685 PF01614 Bacterial transcriptional regulator AUL54_08690 PF02626 Carboxyltransferase domain, subdomain A and B AUL54_08695 PF02682 Carboxyltransferase domain, subdomain C and D AUL54_08700 PF07286 Protein of unknown function (DUF1445) AUL54_08705 PF01566 Natural resistance-associated macrophage protein AUL54_08710 PF03746 LamB/YcsF family AUL54_08720 PF07977 FabA-like domain AUL54_08725 PF08125 Mannitol dehydrogenase C-terminal domain AUL54_08725 PF01232 Mannitol dehydrogenase Rossmann domain AUL54_08730 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AUL54_08735 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AUL54_08735 PF02378 Phosphotransferase system, EIIC AUL54_08745 PF05573 NosL AUL54_08745 PF08220 DeoR-like helix-turn-helix domain AUL54_08750 PF05425 Copper resistance protein D AUL54_08750 PF13115 YtkA-like AUL54_08750 PF04234 CopC domain AUL54_08755 PF07987 Domain of unkown function (DUF1775) AUL54_08765 PF06800 Sugar transport protein AUL54_08770 PF00171 Aldehyde dehydrogenase family AUL54_08775 PF00202 Aminotransferase class-III AUL54_08780 PF00392 Bacterial regulatory proteins, gntR family AUL54_08780 PF00155 Aminotransferase class I and II AUL54_08785 PF01022 Bacterial regulatory protein, arsR family AUL54_08790 PF03992 Antibiotic biosynthesis monooxygenase AUL54_08795 PF00881 Nitroreductase family AUL54_08800 PF00440 Bacterial regulatory proteins, tetR family AUL54_08805 PF07690 Major Facilitator Superfamily AUL54_08810 PF01497 Periplasmic binding protein AUL54_08815 PF00005 ABC transporter AUL54_08820 PF01032 FecCD transport family AUL54_08825 PF01032 FecCD transport family AUL54_08830 PF13840 ACT domain AUL54_08830 PF00696 Amino acid kinase family AUL54_08835 PF11131 Rap-phr extracellular signalling AUL54_08840 PF18801 response regulator aspartate phosphatase H, N terminal AUL54_08845 PF00512 His Kinase A (phospho-acceptor) domain AUL54_08845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AUL54_08845 PF00672 HAMP domain AUL54_08850 PF00072 Response regulator receiver domain AUL54_08850 PF00486 Transcriptional regulatory protein, C terminal AUL54_08855 PF12704 MacB-like periplasmic core domain AUL54_08855 PF02687 FtsX-like permease family AUL54_08860 PF00005 ABC transporter AUL54_08865 PF03972 MmgE/PrpD family AUL54_08875 PF00005 ABC transporter AUL54_08880 PF00528 Binding-protein-dependent transport system inner membrane component AUL54_08885 PF00497 Bacterial extracellular solute-binding proteins, family 3 AUL54_08900 PF03845 Spore germination protein AUL54_08905 PF05504 Spore germination B3/ GerAC like, C-terminal AUL54_08910 PF03323 Bacillus/Clostridium GerA spore germination protein AUL54_08920 PF13229 Right handed beta helix region AUL54_08920 PF12708 Pectate lyase superfamily protein AUL54_08925 PF00854 POT family AUL54_08940 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AUL54_08945 PF02441 Flavoprotein AUL54_08950 PF03466 LysR substrate binding domain AUL54_08950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AUL54_08955 PF00497 Bacterial extracellular solute-binding proteins, family 3 AUL54_08960 PF00528 Binding-protein-dependent transport system inner membrane component AUL54_08965 PF00005 ABC transporter AUL54_08975 PF01648 4'-phosphopantetheinyl transferase superfamily AUL54_08980 PF07685 CobB/CobQ-like glutamine amidotransferase domain AUL54_08980 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AUL54_08980 PF00155 Aminotransferase class I and II AUL54_08985 PF00975 Thioesterase domain AUL54_08990 PF00975 Thioesterase domain AUL54_08990 PF13193 AMP-binding enzyme C-terminal domain AUL54_08990 PF00550 Phosphopantetheine attachment site AUL54_08990 PF00668 Condensation domain AUL54_08990 PF00501 AMP-binding enzyme AUL54_08995 PF00501 AMP-binding enzyme AUL54_08995 PF13193 AMP-binding enzyme C-terminal domain AUL54_08995 PF00668 Condensation domain AUL54_08995 PF00550 Phosphopantetheine attachment site AUL54_09000 PF00501 AMP-binding enzyme AUL54_09000 PF13193 AMP-binding enzyme C-terminal domain AUL54_09000 PF00668 Condensation domain AUL54_09000 PF00550 Phosphopantetheine attachment site AUL54_09005 PF01638 HxlR-like helix-turn-helix AUL54_09010 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AUL54_09015 PF01380 SIS domain AUL54_09020 PF14040 Deoxyribonuclease NucA/NucB AUL54_09025 PF11033 Competence protein J (ComJ) AUL54_09030 PF00232 Glycosyl hydrolase family 1 AUL54_09035 PF10925 Protein of unknown function (DUF2680) AUL54_09040 PF06271 RDD family AUL54_09045 PF00107 Zinc-binding dehydrogenase AUL54_09045 PF08240 Alcohol dehydrogenase GroES-like domain AUL54_09045 PF13823 Alcohol dehydrogenase GroES-associated AUL54_09050 PF07683 Cobalamin synthesis protein cobW C-terminal domain AUL54_09050 PF02492 CobW/HypB/UreG, nucleotide-binding domain AUL54_09055 PF04324 BFD-like [2Fe-2S] binding domain AUL54_09055 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AUL54_09055 PF18267 Rubredoxin NAD+ reductase C-terminal domain AUL54_09055 PF07992 Pyridine nucleotide-disulphide oxidoreductase AUL54_09055 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AUL54_09060 PF00355 Rieske [2Fe-2S] domain AUL54_09065 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AUL54_09070 PF07992 Pyridine nucleotide-disulphide oxidoreductase AUL54_09075 PF13556 PucR C-terminal helix-turn-helix domain AUL54_09075 PF17853 GGDEF-like domain AUL54_09080 PF00474 Sodium:solute symporter family AUL54_09085 PF00171 Aldehyde dehydrogenase family AUL54_09090 PF01619 Proline dehydrogenase AUL54_09095 PF10127 RNA repair pathway DNA polymerase beta family AUL54_09100 PF05448 Acetyl xylan esterase (AXE1) AUL54_09105 PF01202 Shikimate kinase AUL54_09110 PF07690 Major Facilitator Superfamily AUL54_09120 PF12197 Bacillus cereus group antimicrobial protein AUL54_09125 PF02540 NAD synthase AUL54_09130 PF09347 Domain of unknown function (DUF1989) AUL54_09135 PF00324 Amino acid permease AUL54_09140 PF08892 YqcI/YcgG family AUL54_09145 PF01810 LysE type translocator AUL54_09150 PF01047 MarR family AUL54_09155 PF07690 Major Facilitator Superfamily AUL54_09160 PF00056 lactate/malate dehydrogenase, NAD binding domain AUL54_09160 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AUL54_09165 PF00128 Alpha amylase, catalytic domain AUL54_09165 PF16738 Starch-binding module 26 AUL54_09175 PF03606 C4-dicarboxylate anaerobic carrier AUL54_09180 PF07687 Peptidase dimerisation domain AUL54_09180 PF01546 Peptidase family M20/M25/M40 AUL54_09190 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AUL54_09195 PF00528 Binding-protein-dependent transport system inner membrane component AUL54_09200 PF00005 ABC transporter AUL54_09200 PF00571 CBS domain AUL54_09205 PF07690 Major Facilitator Superfamily AUL54_09210 PF05816 Toxic anion resistance protein (TelA) AUL54_09215 PF14266 Putative component of 'biosynthetic module' AUL54_09220 PF03741 Integral membrane protein TerC family AUL54_09225 PF02342 TerD domain AUL54_09230 PF02342 TerD domain AUL54_09235 PF02342 TerD domain AUL54_09245 PF00950 ABC 3 transport family AUL54_09250 PF00005 ABC transporter AUL54_09255 PF01297 Zinc-uptake complex component A periplasmic AUL54_09260 PF00128 Alpha amylase, catalytic domain AUL54_09275 PF18801 response regulator aspartate phosphatase H, N terminal AUL54_09280 PF13539 D-alanyl-D-alanine carboxypeptidase AUL54_09285 PF16244 Domain of unknown function (DUF4901) AUL54_09290 PF16244 Domain of unknown function (DUF4901) AUL54_09295 PF17118 Domain of unknown function (DUF5105) AUL54_09295 PF11611 Domain of unknown function (DUF4352) AUL54_09300 PF00248 Aldo/keto reductase family AUL54_09305 PF02810 SEC-C motif AUL54_09305 PF05225 helix-turn-helix, Psq domain AUL54_09310 PF01674 Lipase (class 2) AUL54_09315 PF00710 Asparaginase, N-terminal AUL54_09315 PF17763 Glutaminase/Asparaginase C-terminal domain AUL54_09320 PF00440 Bacterial regulatory proteins, tetR family AUL54_09325 PF07690 Major Facilitator Superfamily AUL54_09330 PF00266 Aminotransferase class-V AUL54_09335 PF01470 Pyroglutamyl peptidase AUL54_09340 PF00902 Sec-independent protein translocase protein (TatC) AUL54_09345 PF02416 mttA/Hcf106 family AUL54_09350 PF16655 PhoD-like phosphatase, N-terminal domain AUL54_09350 PF09423 PhoD-like phosphatase AUL54_09355 PF07486 Cell Wall Hydrolase AUL54_09360 PF10710 Protein of unknown function (DUF2512) AUL54_09365 PF00085 Thioredoxin AUL54_09370 PF07681 DoxX AUL54_09375 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AUL54_09380 PF00881 Nitroreductase family AUL54_09385 PF01545 Cation efflux family AUL54_09385 PF16916 Dimerisation domain of Zinc Transporter AUL54_09390 PF00072 Response regulator receiver domain AUL54_09390 PF08664 YcbB domain AUL54_09395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AUL54_09400 PF04960 Glutaminase AUL54_09405 PF01235 Sodium:alanine symporter family AUL54_09410 PF02574 Homocysteine S-methyltransferase AUL54_09415 PF00324 Amino acid permease AUL54_09420 PF01063 Amino-transferase class IV AUL54_09425 PF00375 Sodium:dicarboxylate symporter family AUL54_09440 PF02666 Phosphatidylserine decarboxylase AUL54_09445 PF09335 SNARE associated Golgi protein AUL54_09450 PF01066 CDP-alcohol phosphatidyltransferase AUL54_09455 PF02222 ATP-grasp domain AUL54_09460 PF00465 Iron-containing alcohol dehydrogenase AUL54_09470 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH AUL54_09470 PF04740 LXG domain of WXG superfamily AUL54_09480 PF01471 Putative peptidoglycan binding domain AUL54_09480 PF08924 Domain of unknown function (DUF1906) AUL54_09490 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal AUL54_09490 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal AUL54_09495 PF10852 Protein of unknown function (DUF2651) AUL54_09500 PF07690 Major Facilitator Superfamily AUL54_09505 PF03009 Glycerophosphoryl diester phosphodiesterase family AUL54_09510 PF10852 Protein of unknown function (DUF2651) AUL54_09525 PF13520 Amino acid permease AUL54_09540 PF17334 Minor curli fiber component A AUL54_09545 PF16219 Domain of unknown function (DUF4879) AUL54_09565 PF00005 ABC transporter AUL54_09570 PF00072 Response regulator receiver domain AUL54_09570 PF00196 Bacterial regulatory proteins, luxR family AUL54_09575 PF07730 Histidine kinase AUL54_09580 PF13419 Haloacid dehalogenase-like hydrolase AUL54_09585 PF00324 Amino acid permease AUL54_09590 PF01047 MarR family AUL54_09595 PF03788 LrgA family AUL54_09600 PF04172 LrgB-like family AUL54_09605 PF00248 Aldo/keto reductase family AUL54_09610 PF16226 Domain of unknown function (DUF4885) AUL54_09625 PF02463 RecF/RecN/SMC N terminal domain AUL54_09630 PF01380 SIS domain AUL54_09635 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AUL54_09635 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AUL54_09635 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AUL54_09635 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AUL54_09640 PF07949 YbbR-like protein AUL54_09645 PF02457 DisA bacterial checkpoint controller nucleotide-binding AUL54_09650 PF13490 Putative zinc-finger AUL54_09655 PF08281 Sigma-70, region 4 AUL54_09655 PF04542 Sigma-70 region 2 AUL54_09685 PF04463 Protein of unknown function (DUF523) AUL54_09695 PF01380 SIS domain AUL54_09700 PF00367 phosphotransferase system, EIIB AUL54_09700 PF02378 Phosphotransferase system, EIIC AUL54_09705 PF00144 Beta-lactamase AUL54_09710 PF00933 Glycosyl hydrolase family 3 N terminal domain AUL54_09710 PF01915 Glycosyl hydrolase family 3 C-terminal domain AUL54_09715 PF07075 Protein of unknown function (DUF1343) AUL54_09720 PF12833 Helix-turn-helix domain AUL54_09720 PF01497 Periplasmic binding protein AUL54_09725 PF01497 Periplasmic binding protein AUL54_09730 PF01032 FecCD transport family AUL54_09735 PF01032 FecCD transport family AUL54_09740 PF00756 Putative esterase AUL54_09745 PF01758 Sodium Bile acid symporter family AUL54_09750 PF00916 Sulfate permease family AUL54_09750 PF01740 STAS domain AUL54_09765 PF00202 Aminotransferase class-III AUL54_09770 PF07690 Major Facilitator Superfamily AUL54_09830 PF01522 Polysaccharide deacetylase AUL54_09835 PF14089 KinB-signalling pathway activation in sporulation AUL54_09840 PF17898 Spore germination GerD central core domain AUL54_09845 PF10609 NUBPL iron-transfer P-loop NTPase AUL54_09850 PF01520 N-acetylmuramoyl-L-alanine amidase AUL54_09855 PF10730 Protein of unknown function (DUF2521) AUL54_09860 PF05163 DinB family AUL54_09865 PF08241 Methyltransferase domain AUL54_09870 PF00380 Ribosomal protein S9/S16 AUL54_09875 PF00572 Ribosomal protein L13 AUL54_09880 PF01416 tRNA pseudouridine synthase AUL54_09885 PF02361 Cobalt transport protein AUL54_09890 PF00005 ABC transporter AUL54_09895 PF00005 ABC transporter AUL54_09900 PF01196 Ribosomal protein L17 AUL54_09905 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AUL54_09905 PF01000 RNA polymerase Rpb3/RpoA insert domain AUL54_09905 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AUL54_09910 PF00411 Ribosomal protein S11 AUL54_09915 PF00416 Ribosomal protein S13/S18 AUL54_09920 PF00444 Ribosomal protein L36 AUL54_09925 PF01176 Translation initiation factor 1A / IF-1 AUL54_09930 PF00557 Metallopeptidase family M24 AUL54_09935 PF05191 Adenylate kinase, active site lid AUL54_09940 PF00344 SecY translocase AUL54_09945 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AUL54_09950 PF00327 Ribosomal protein L30p/L7e AUL54_09955 PF00333 Ribosomal protein S5, N-terminal domain AUL54_09955 PF03719 Ribosomal protein S5, C-terminal domain AUL54_09960 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AUL54_09965 PF00347 Ribosomal protein L6 AUL54_09970 PF00410 Ribosomal protein S8 AUL54_09975 PF00673 ribosomal L5P family C-terminus AUL54_09975 PF00281 Ribosomal protein L5 AUL54_09980 PF00467 KOW motif AUL54_09980 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AUL54_09985 PF00238 Ribosomal protein L14p/L23e AUL54_09990 PF00366 Ribosomal protein S17 AUL54_09995 PF00831 Ribosomal L29 protein AUL54_10000 PF00252 Ribosomal protein L16p/L10e AUL54_10005 PF07650 KH domain AUL54_10005 PF00189 Ribosomal protein S3, C-terminal domain AUL54_10010 PF00237 Ribosomal protein L22p/L17e AUL54_10015 PF00203 Ribosomal protein S19 AUL54_10020 PF03947 Ribosomal Proteins L2, C-terminal domain AUL54_10020 PF00181 Ribosomal Proteins L2, RNA binding domain AUL54_10025 PF00276 Ribosomal protein L23 AUL54_10030 PF00573 Ribosomal protein L4/L1 family AUL54_10035 PF00297 Ribosomal protein L3 AUL54_10040 PF00338 Ribosomal protein S10p/S20e AUL54_10045 PF12146 Serine aminopeptidase, S33 AUL54_10050 PF00009 Elongation factor Tu GTP binding domain AUL54_10050 PF03143 Elongation factor Tu C-terminal domain AUL54_10050 PF03144 Elongation factor Tu domain 2 AUL54_10055 PF03144 Elongation factor Tu domain 2 AUL54_10055 PF00679 Elongation factor G C-terminus AUL54_10055 PF14492 Elongation Factor G, domain II AUL54_10055 PF03764 Elongation factor G, domain IV AUL54_10055 PF00009 Elongation factor Tu GTP binding domain AUL54_10060 PF00177 Ribosomal protein S7p/S5e AUL54_10065 PF00164 Ribosomal protein S12/S23 AUL54_10070 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family AUL54_10075 PF04998 RNA polymerase Rpb1, domain 5 AUL54_10075 PF04997 RNA polymerase Rpb1, domain 1 AUL54_10075 PF00623 RNA polymerase Rpb1, domain 2 AUL54_10075 PF04983 RNA polymerase Rpb1, domain 3 AUL54_10075 PF05000 RNA polymerase Rpb1, domain 4 AUL54_10080 PF04561 RNA polymerase Rpb2, domain 2 AUL54_10080 PF04560 RNA polymerase Rpb2, domain 7 AUL54_10080 PF04565 RNA polymerase Rpb2, domain 3 AUL54_10080 PF00562 RNA polymerase Rpb2, domain 6 AUL54_10080 PF10385 RNA polymerase beta subunit external 1 domain AUL54_10080 PF04563 RNA polymerase beta subunit AUL54_10085 PF05175 Methyltransferase small domain AUL54_10090 PF16320 Ribosomal protein L7/L12 dimerisation domain AUL54_10090 PF00542 Ribosomal protein L7/L12 C-terminal domain AUL54_10095 PF00466 Ribosomal protein L10 AUL54_10100 PF00687 Ribosomal protein L1p/L10e family AUL54_10105 PF03946 Ribosomal protein L11, N-terminal domain AUL54_10105 PF00298 Ribosomal protein L11, RNA binding domain AUL54_10110 PF00467 KOW motif AUL54_10110 PF02357 Transcription termination factor nusG AUL54_10115 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AUL54_10120 PF00471 Ribosomal protein L33 AUL54_10125 PF08281 Sigma-70, region 4 AUL54_10125 PF04542 Sigma-70 region 2 AUL54_10130 PF05991 YacP-like NYN domain AUL54_10135 PF00588 SpoU rRNA Methylase family AUL54_10135 PF08032 RNA 2'-O ribose methyltransferase substrate binding AUL54_10140 PF00636 Ribonuclease III domain AUL54_10145 PF09190 DALR domain AUL54_10145 PF01406 tRNA synthetases class I (C) catalytic domain AUL54_10150 PF06426 Serine acetyltransferase, N-terminal AUL54_10150 PF00132 Bacterial transferase hexapeptide (six repeats) AUL54_10155 PF00749 tRNA synthetases class I (E and Q), catalytic domain AUL54_10160 PF02542 YgbB family AUL54_10165 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AUL54_10175 PF02457 DisA bacterial checkpoint controller nucleotide-binding AUL54_10175 PF10635 DisA bacterial checkpoint controller linker region AUL54_10180 PF18073 Rubredoxin metal binding domain AUL54_10185 PF10431 C-terminal, D2-small domain, of ClpB protein AUL54_10185 PF17871 AAA lid domain AUL54_10185 PF00004 ATPase family associated with various cellular activities (AAA) AUL54_10185 PF07724 AAA domain (Cdc48 subfamily) AUL54_10185 PF02861 Clp amino terminal domain, pathogenicity island component AUL54_10190 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain AUL54_10195 PF02151 UvrB/uvrC motif AUL54_10200 PF17727 CtsR C-terminal dimerization domain AUL54_10200 PF05848 CtsR N-terminal HTH domain AUL54_10280 PF01336 OB-fold nucleic acid binding domain AUL54_10280 PF00152 tRNA synthetases class II (D, K and N) AUL54_10285 PF01207 Dihydrouridine synthase (Dus) AUL54_10290 PF01381 Helix-turn-helix AUL54_10295 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AUL54_10300 PF02152 Dihydroneopterin aldolase AUL54_10305 PF00809 Pterin binding enzyme AUL54_10310 PF01063 Amino-transferase class IV AUL54_10315 PF00117 Glutamine amidotransferase class-I AUL54_10320 PF00425 chorismate binding enzyme AUL54_10320 PF04715 Anthranilate synthase component I, N terminal region AUL54_10325 PF00291 Pyridoxal-phosphate dependent enzyme AUL54_10330 PF13145 PPIC-type PPIASE domain AUL54_10335 PF01430 Hsp33 protein AUL54_10340 PF03309 Type III pantothenate kinase AUL54_10345 PF06480 FtsH Extracellular AUL54_10345 PF01434 Peptidase family M41 AUL54_10345 PF17862 AAA+ lid domain AUL54_10345 PF00004 ATPase family associated with various cellular activities (AAA) AUL54_10355 PF09179 TilS substrate binding domain AUL54_10355 PF01171 PP-loop family AUL54_10355 PF11734 TilS substrate C-terminal domain AUL54_10360 PF00069 Protein kinase domain AUL54_10365 PF00092 von Willebrand factor type A domain AUL54_10370 PF07228 Stage II sporulation protein E (SpoIIE) AUL54_10385 PF00575 S1 RNA binding domain AUL54_10390 PF04977 Septum formation initiator AUL54_10395 PF09578 Spore cortex protein YabQ (Spore_YabQ) AUL54_10400 PF07873 YabP family AUL54_10405 PF01479 S4 domain AUL54_10410 PF03819 MazG nucleotide pyrophosphohydrolase domain AUL54_10410 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AUL54_10415 PF14667 Polysaccharide biosynthesis C-terminal domain AUL54_10415 PF01943 Polysaccharide biosynthesis protein AUL54_10420 PF15714 Stage V sporulation protein T C-terminal, transcription factor AUL54_10420 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AUL54_10425 PF17757 UvrB interaction domain AUL54_10425 PF00271 Helicase conserved C-terminal domain AUL54_10425 PF00270 DEAD/DEAH box helicase AUL54_10425 PF02559 CarD-like/TRCF domain AUL54_10425 PF03461 TRCF domain AUL54_10430 PF10955 Protein of unknown function (DUF2757) AUL54_10435 PF01195 Peptidyl-tRNA hydrolase AUL54_10440 PF01386 Ribosomal L25p family AUL54_10440 PF14693 Ribosomal protein TL5, C-terminal domain AUL54_10445 PF14572 Phosphoribosyl synthetase-associated domain AUL54_10445 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AUL54_10450 PF00483 Nucleotidyl transferase AUL54_10450 PF00132 Bacterial transferase hexapeptide (six repeats) AUL54_10455 PF04026 SpoVG AUL54_10460 PF01042 Endoribonuclease L-PSP AUL54_10465 PF09182 Bacterial purine repressor, N-terminal AUL54_10465 PF00156 Phosphoribosyl transferase domain AUL54_10470 PF08544 GHMP kinases C terminal AUL54_10470 PF00288 GHMP kinases N terminal domain AUL54_10475 PF00269 Small, acid-soluble spore proteins, alpha/beta type AUL54_10480 PF06257 Biofilm formation stimulator VEG AUL54_10485 PF05582 YabG peptidase U57 AUL54_10490 PF00398 Ribosomal RNA adenine dimethylase AUL54_10495 PF13662 Toprim domain AUL54_10495 PF13331 Domain of unknown function (DUF4093) AUL54_10500 PF06725 3D domain AUL54_10500 PF03990 G5-linked-Ubiquitin-like domain AUL54_10500 PF07501 G5 domain AUL54_10505 PF01026 TatD related DNase AUL54_10510 PF09334 tRNA synthetases class I (M) AUL54_10510 PF08264 Anticodon-binding domain of tRNA AUL54_10510 PF01588 Putative tRNA binding domain AUL54_10515 PF18277 AbrB C-terminal domain AUL54_10515 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin AUL54_10520 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AUL54_10525 PF01541 GIY-YIG catalytic domain AUL54_10530 PF05175 Methyltransferase small domain AUL54_10535 PF06156 Initiation control protein YabA AUL54_10540 PF04468 PSP1 C-terminal conserved region AUL54_10545 PF09115 DNA polymerase III, delta subunit, C terminal AUL54_10550 PF03885 Protein of unknown function (DUF327) AUL54_10555 PF06153 Cyclic-di-AMP receptor AUL54_10560 PF02223 Thymidylate kinase AUL54_10565 PF01276 Orn/Lys/Arg decarboxylase, major domain AUL54_10565 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AUL54_10570 PF05816 Toxic anion resistance protein (TelA) AUL54_10575 PF10112 5-bromo-4-chloroindolyl phosphate hydrolysis protein AUL54_10580 PF10764 Inhibitor of sigma-G Gin AUL54_10610 PF07441 SigmaK-factor processing regulatory protein BofA AUL54_10615 PF10704 Protein of unknown function (DUF2508) AUL54_10620 PF13662 Toprim domain AUL54_10620 PF02132 RecR protein AUL54_10625 PF02575 YbaB/EbfC DNA-binding family AUL54_10630 PF12169 DNA polymerase III subunits gamma and tau domain III AUL54_10645 PF14437 MafB19-like deaminase AUL54_10650 PF00857 Isochorismatase family AUL54_10655 PF00704 Glycosyl hydrolases family 18 AUL54_10655 PF01476 LysM domain AUL54_10660 PF01712 Deoxynucleoside kinase AUL54_10665 PF01712 Deoxynucleoside kinase AUL54_10680 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AUL54_10680 PF02403 Seryl-tRNA synthetase N-terminal domain AUL54_10685 PF01174 SNO glutamine amidotransferase family AUL54_10690 PF01680 SOR/SNZ family AUL54_10695 PF00768 D-alanyl-D-alanine carboxypeptidase AUL54_10695 PF07943 Penicillin-binding protein 5, C-terminal domain AUL54_10700 PF00571 CBS domain AUL54_10700 PF00478 IMP dehydrogenase / GMP reductase domain AUL54_10705 PF14175 YaaC-like Protein AUL54_10735 PF00521 DNA gyrase/topoisomerase IV, subunit A AUL54_10735 PF03989 DNA gyrase C-terminal domain, beta-propeller AUL54_10740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AUL54_10740 PF00204 DNA gyrase B AUL54_10740 PF01751 Toprim domain AUL54_10740 PF00986 DNA gyrase B subunit, carboxyl terminus AUL54_10745 PF04025 Domain of unknown function (DUF370) AUL54_10750 PF02463 RecF/RecN/SMC N terminal domain AUL54_10760 PF00712 DNA polymerase III beta subunit, N-terminal domain AUL54_10760 PF02767 DNA polymerase III beta subunit, central domain AUL54_10760 PF02768 DNA polymerase III beta subunit, C-terminal domain AUL54_10765 PF08299 Bacterial dnaA protein helix-turn-helix AUL54_10765 PF11638 DnaA N-terminal domain AUL54_10765 PF00308 Bacterial dnaA protein AUL54_10770 PF00825 Ribonuclease P AUL54_10775 PF02096 60Kd inner membrane protein AUL54_10780 PF01424 R3H domain AUL54_10780 PF14804 Jag N-terminus AUL54_10785 PF10396 GTP-binding protein TrmE N-terminus AUL54_10785 PF12631 MnmE helical domain AUL54_10785 PF01926 50S ribosome-binding GTPase AUL54_10790 PF01134 Glucose inhibited division protein A AUL54_10790 PF13932 GidA associated domain AUL54_10795 PF02527 rRNA small subunit methyltransferase G AUL54_10800 PF02195 ParB-like nuclease domain AUL54_10800 PF17762 HTH domain found in ParB protein AUL54_10805 PF13614 AAA domain AUL54_10810 PF17762 HTH domain found in ParB protein AUL54_10810 PF02195 ParB-like nuclease domain AUL54_10815 PF06866 Protein of unknown function (DUF1256) AUL54_10830 PF06107 Bacterial protein of unknown function (DUF951) AUL54_10835 PF01568 Molydopterin dinucleotide binding domain AUL54_10835 PF00384 Molybdopterin oxidoreductase AUL54_10835 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AUL54_10840 PF06071 Protein of unknown function (DUF933) AUL54_10840 PF01926 50S ribosome-binding GTPase AUL54_10845 PF01250 Ribosomal protein S6 AUL54_10850 PF00436 Single-strand binding protein family AUL54_10855 PF01084 Ribosomal protein S18 AUL54_10860 PF12833 Helix-turn-helix domain AUL54_10860 PF02805 Metal binding domain of Ada AUL54_10865 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AUL54_10865 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AUL54_10870 PF03372 Endonuclease/Exonuclease/phosphatase family AUL54_10875 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family AUL54_10875 PF00356 Bacterial regulatory proteins, lacI family AUL54_10880 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AUL54_10885 PF00083 Sugar (and other) transporter AUL54_10890 PF02517 CPBP intramembrane metalloprotease AUL54_10895 PF03190 Protein of unknown function, DUF255 AUL54_10900 PF01546 Peptidase family M20/M25/M40 AUL54_10900 PF07687 Peptidase dimerisation domain AUL54_10910 PF00005 ABC transporter AUL54_10945 PF00892 EamA-like transporter family AUL54_10950 PF00392 Bacterial regulatory proteins, gntR family AUL54_10950 PF00155 Aminotransferase class I and II AUL54_10955 PF13673 Acetyltransferase (GNAT) domain AUL54_10960 PF01047 MarR family AUL54_10965 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AUL54_10965 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AUL54_10970 PF01047 MarR family AUL54_10975 PF00881 Nitroreductase family AUL54_10985 PF03466 LysR substrate binding domain AUL54_10985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AUL54_10990 PF07690 Major Facilitator Superfamily AUL54_10995 PF05163 DinB family AUL54_11000 PF07729 FCD domain AUL54_11000 PF00392 Bacterial regulatory proteins, gntR family AUL54_11005 PF00251 Glycosyl hydrolases family 32 N-terminal domain AUL54_11005 PF08244 Glycosyl hydrolases family 32 C terminal AUL54_11010 PF02435 Levansucrase/Invertase AUL54_11015 PF00892 EamA-like transporter family AUL54_11020 PF01368 DHH family AUL54_11020 PF02833 DHHA2 domain AUL54_11025 PF01638 HxlR-like helix-turn-helix AUL54_11030 PF07875 Coat F domain AUL54_11035 PF09991 Predicted membrane protein (DUF2232) AUL54_11040 PF01368 DHH family AUL54_11040 PF02272 DHHA1 domain AUL54_11045 PF01281 Ribosomal protein L9, N-terminal domain AUL54_11045 PF03948 Ribosomal protein L9, C-terminal domain AUL54_11060 PF00534 Glycosyl transferases group 1 AUL54_11060 PF13439 Glycosyltransferase Family 4 AUL54_11065 PF02222 ATP-grasp domain AUL54_11075 PF00534 Glycosyl transferases group 1 AUL54_11075 PF13439 Glycosyltransferase Family 4 AUL54_11085 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) AUL54_11090 PF00772 DnaB-like helicase N terminal domain AUL54_11090 PF03796 DnaB-like helicase C terminal domain AUL54_11095 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AUL54_11100 PF00709 Adenylosuccinate synthetase AUL54_11130 PF00072 Response regulator receiver domain AUL54_11130 PF00486 Transcriptional regulatory protein, C terminal AUL54_11135 PF00512 His Kinase A (phospho-acceptor) domain AUL54_11135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AUL54_11135 PF13426 PAS domain AUL54_11135 PF00672 HAMP domain AUL54_11140 PF07435 YycH protein AUL54_11145 PF09648 YycH protein AUL54_11150 PF00753 Metallo-beta-lactamase superfamily AUL54_11155 PF13180 PDZ domain AUL54_11165 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AUL54_11165 PF00512 His Kinase A (phospho-acceptor) domain AUL54_11165 PF18698 Histidine kinase sensor domain AUL54_11165 PF00672 HAMP domain AUL54_11170 PF02954 Bacterial regulatory protein, Fis family AUL54_11170 PF00158 Sigma-54 interaction domain AUL54_11170 PF13426 PAS domain AUL54_11175 PF01022 Bacterial regulatory protein, arsR family AUL54_11180 PF13630 SdpI/YhfL protein family AUL54_11180 PF07853 Protein of unknown function (DUF1648) AUL54_11185 PF00202 Aminotransferase class-III AUL54_11190 PF00324 Amino acid permease AUL54_11195 PF00491 Arginase family AUL54_11200 PF18801 response regulator aspartate phosphatase H, N terminal AUL54_11205 PF00583 Acetyltransferase (GNAT) family AUL54_11225 PF02590 Predicted SPOUT methyltransferase AUL54_11230 PF03793 PASTA domain AUL54_11230 PF00069 Protein kinase domain AUL54_11265 PF02625 XdhC and CoxI family AUL54_11265 PF13478 XdhC Rossmann domain AUL54_11270 PF12804 MobA-like NTP transferase domain AUL54_11275 PF00111 2Fe-2S iron-sulfur cluster binding domain AUL54_11275 PF01799 [2Fe-2S] binding domain AUL54_11275 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AUL54_11275 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AUL54_11285 PF01799 [2Fe-2S] binding domain AUL54_11285 PF00111 2Fe-2S iron-sulfur cluster binding domain AUL54_11290 PF06874 Firmicute fructose-1,6-bisphosphatase AUL54_11295 PF00324 Amino acid permease AUL54_11300 PF13192 Thioredoxin domain AUL54_11300 PF07992 Pyridine nucleotide-disulphide oxidoreductase AUL54_11305 PF00578 AhpC/TSA family AUL54_11315 PF06271 RDD family AUL54_11320 PF07690 Major Facilitator Superfamily AUL54_11330 PF17369 Family of unknown function (DUF5391) AUL54_11335 PF13570 PQQ-like domain AUL54_11335 PF13360 PQQ-like domain AUL54_11335 PF01011 PQQ enzyme repeat AUL54_11340 PF00171 Aldehyde dehydrogenase family AUL54_11345 PF00440 Bacterial regulatory proteins, tetR family AUL54_11350 PF00487 Fatty acid desaturase AUL54_11355 PF07730 Histidine kinase AUL54_11360 PF00196 Bacterial regulatory proteins, luxR family AUL54_11360 PF00072 Response regulator receiver domain AUL54_11375 PF00183 Hsp90 protein AUL54_11375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AUL54_11380 PF00083 Sugar (and other) transporter AUL54_11385 PF00248 Aldo/keto reductase family AUL54_11390 PF08220 DeoR-like helix-turn-helix domain AUL54_11390 PF00455 DeoR C terminal sensor domain AUL54_11395 PF00171 Aldehyde dehydrogenase family AUL54_11400 PF04962 KduI/IolB family AUL54_11405 PF00294 pfkB family carbohydrate kinase AUL54_11410 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AUL54_11410 PF00205 Thiamine pyrophosphate enzyme, central domain AUL54_11410 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AUL54_11415 PF01261 Xylose isomerase-like TIM barrel AUL54_11420 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AUL54_11420 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AUL54_11425 PF01261 Xylose isomerase-like TIM barrel AUL54_11430 PF01261 Xylose isomerase-like TIM barrel AUL54_11435 PF01116 Fructose-bisphosphate aldolase class-II AUL54_11440 PF00486 Transcriptional regulatory protein, C terminal AUL54_11440 PF00072 Response regulator receiver domain AUL54_11445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AUL54_11450 PF00005 ABC transporter AUL54_11455 PF02687 FtsX-like permease family AUL54_11460 PF06486 Protein of unknown function (DUF1093) AUL54_11465 PF01497 Periplasmic binding protein AUL54_11485 PF11631 Protein of unknown function (DUF3255) AUL54_11500 PF04198 Putative sugar-binding domain AUL54_11505 PF01791 DeoC/LacD family aldolase AUL54_11510 PF07662 Na+ dependent nucleoside transporter C-terminus AUL54_11510 PF01773 Na+ dependent nucleoside transporter N-terminus AUL54_11515 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain AUL54_11515 PF00591 Glycosyl transferase family, a/b domain AUL54_11515 PF02885 Glycosyl transferase family, helical bundle domain AUL54_11535 PF02378 Phosphotransferase system, EIIC AUL54_11535 PF00367 phosphotransferase system, EIIB AUL54_11535 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AUL54_11540 PF00232 Glycosyl hydrolase family 1 AUL54_11545 PF00582 Universal stress protein family AUL54_11550 PF00892 EamA-like transporter family AUL54_11555 PF00544 Pectate lyase AUL54_11560 PF05593 RHS Repeat AUL54_11605 PF14176 YxiJ-like protein AUL54_11620 PF10898 Protein of unknown function (DUF2716) AUL54_11640 PF00271 Helicase conserved C-terminal domain AUL54_11640 PF00270 DEAD/DEAH box helicase AUL54_11640 PF03880 DbpA RNA binding domain AUL54_11645 PF11700 Vacuole effluxer Atg22 like AUL54_11650 PF03123 CAT RNA binding domain AUL54_11650 PF00874 PRD domain AUL54_11655 PF00722 Glycosyl hydrolases family 16 AUL54_11660 PF03600 Citrate transporter AUL54_11665 PF18011 C-terminal domain found in long catalases AUL54_11665 PF00199 Catalase AUL54_11665 PF06628 Catalase-related immune-responsive AUL54_11680 PF07662 Na+ dependent nucleoside transporter C-terminus AUL54_11680 PF01773 Na+ dependent nucleoside transporter N-terminus AUL54_11685 PF08241 Methyltransferase domain AUL54_11690 PF01717 Cobalamin-independent synthase, Catalytic domain AUL54_11695 PF04525 LURP-one-related AUL54_11700 PF07687 Peptidase dimerisation domain AUL54_11700 PF01546 Peptidase family M20/M25/M40 AUL54_11705 PF16363 GDP-mannose 4,6 dehydratase AUL54_11710 PF11611 Domain of unknown function (DUF4352) AUL54_11715 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AUL54_11715 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AUL54_11720 PF13556 PucR C-terminal helix-turn-helix domain AUL54_11725 PF00005 ABC transporter AUL54_11725 PF03459 TOBE domain AUL54_11725 PF17912 MalK OB fold domain AUL54_11730 PF01522 Polysaccharide deacetylase AUL54_11735 PF03390 2-hydroxycarboxylate transporter family AUL54_11740 PF01654 Cytochrome bd terminal oxidase subunit I AUL54_11745 PF02322 Cytochrome bd terminal oxidase subunit II AUL54_11750 PF00664 ABC transporter transmembrane region AUL54_11750 PF00005 ABC transporter AUL54_11755 PF00664 ABC transporter transmembrane region AUL54_11755 PF00005 ABC transporter AUL54_11760 PF01256 Carbohydrate kinase AUL54_11765 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AUL54_11770 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family AUL54_11775 PF06628 Catalase-related immune-responsive AUL54_11775 PF00199 Catalase AUL54_11780 PF02040 Arsenical pump membrane protein AUL54_11785 PF01022 Bacterial regulatory protein, arsR family AUL54_11790 PF01497 Periplasmic binding protein AUL54_11795 PF01032 FecCD transport family AUL54_11800 PF01032 FecCD transport family AUL54_11805 PF02245 Methylpurine-DNA glycosylase (MPG) AUL54_11810 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AUL54_11810 PF00874 PRD domain AUL54_11810 PF05043 Mga helix-turn-helix domain AUL54_11810 PF08279 HTH domain AUL54_11815 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit AUL54_11820 PF02378 Phosphotransferase system, EIIC AUL54_11825 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit AUL54_11830 PF02056 Family 4 glycosyl hydrolase AUL54_11830 PF11975 Family 4 glycosyl hydrolase C-terminal domain AUL54_11840 PF00158 Sigma-54 interaction domain AUL54_11845 PF00491 Arginase family AUL54_11865 PF01063 Amino-transferase class IV AUL54_11870 PF04914 DltD protein AUL54_11875 PF00550 Phosphopantetheine attachment site AUL54_11880 PF03062 MBOAT, membrane-bound O-acyltransferase family AUL54_11885 PF13193 AMP-binding enzyme C-terminal domain AUL54_11885 PF00501 AMP-binding enzyme AUL54_11890 PF12459 D-Ala-teichoic acid biosynthesis protein AUL54_11895 PF01040 UbiA prenyltransferase family AUL54_11900 PF04607 Region found in RelA / SpoT proteins AUL54_11905 PF01501 Glycosyl transferase family 8 AUL54_11910 PF00082 Subtilase family AUL54_11915 PF02378 Phosphotransferase system, EIIC AUL54_11920 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AUL54_11925 PF17785 PUA-like domain AUL54_11925 PF10672 S-adenosylmethionine-dependent methyltransferase AUL54_11930 PF09962 Uncharacterized conserved protein (DUF2196) AUL54_11935 PF04172 LrgB-like family AUL54_11940 PF03788 LrgA family AUL54_11945 PF03466 LysR substrate binding domain AUL54_11945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AUL54_11950 PF02110 Hydroxyethylthiazole kinase family AUL54_11955 PF02581 Thiamine monophosphate synthase AUL54_11960 PF03239 Iron permease FTR1 family AUL54_11965 PF09375 Imelysin AUL54_11970 PF10518 TAT (twin-arginine translocation) pathway signal sequence AUL54_11970 PF04261 Dyp-type peroxidase family AUL54_11975 PF01323 DSBA-like thioredoxin domain AUL54_11985 PF08468 Methyltransferase small domain N-terminal AUL54_11985 PF05175 Methyltransferase small domain AUL54_11990 PF08671 Anti-repressor SinI AUL54_11995 PF00440 Bacterial regulatory proteins, tetR family AUL54_12000 PF04138 GtrA-like protein AUL54_12005 PF00288 GHMP kinases N terminal domain AUL54_12005 PF10509 Galactokinase galactose-binding signature AUL54_12005 PF08544 GHMP kinases C terminal AUL54_12010 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain AUL54_12010 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain AUL54_12015 PF04226 Transglycosylase associated protein AUL54_12020 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AUL54_12020 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AUL54_12025 PF00115 Cytochrome C and Quinol oxidase polypeptide I AUL54_12030 PF00510 Cytochrome c oxidase subunit III AUL54_12035 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AUL54_12040 PF17368 Spore morphogenesis and germination YwcE AUL54_12045 PF00583 Acetyltransferase (GNAT) family AUL54_12050 PF01098 Cell cycle protein AUL54_12055 PF00881 Nitroreductase family AUL54_12065 PF00082 Subtilase family AUL54_12065 PF02225 PA domain AUL54_12065 PF13860 FlgD Ig-like domain AUL54_12065 PF05922 Peptidase inhibitor I9 AUL54_12075 PF00874 PRD domain AUL54_12075 PF03123 CAT RNA binding domain AUL54_12080 PF02378 Phosphotransferase system, EIIC AUL54_12080 PF00367 phosphotransferase system, EIIB AUL54_12085 PF08244 Glycosyl hydrolases family 32 C terminal AUL54_12085 PF00251 Glycosyl hydrolases family 32 N-terminal domain AUL54_12095 PF08543 Phosphomethylpyrimidine kinase AUL54_12100 PF03551 Transcriptional regulator PadR-like family AUL54_12115 PF00535 Glycosyl transferase family 2 AUL54_12120 PF03167 Uracil DNA glycosylase superfamily AUL54_12125 PF17261 Family of unknown function (DUF5327) AUL54_12130 PF00860 Permease family AUL54_12135 PF04241 Protein of unknown function (DUF423) AUL54_12140 PF09671 Spore coat protein (Spore_GerQ) AUL54_12145 PF00535 Glycosyl transferase family 2 AUL54_12150 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase AUL54_12155 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AUL54_12160 PF00583 Acetyltransferase (GNAT) family AUL54_12165 PF03102 NeuB family AUL54_12165 PF08666 SAF domain AUL54_12170 PF02348 Cytidylyltransferase AUL54_12175 PF04101 Glycosyltransferase family 28 C-terminal domain AUL54_12180 PF00483 Nucleotidyl transferase AUL54_12185 PF16363 GDP-mannose 4,6 dehydratase AUL54_12190 PF04321 RmlD substrate binding domain AUL54_12195 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AUL54_12200 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AUL54_12200 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AUL54_12205 PF00171 Aldehyde dehydrogenase family AUL54_12210 PF01546 Peptidase family M20/M25/M40 AUL54_12215 PF00324 Amino acid permease AUL54_12220 PF07690 Major Facilitator Superfamily AUL54_12225 PF07690 Major Facilitator Superfamily AUL54_12235 PF07883 Cupin domain AUL54_12250 PF07690 Major Facilitator Superfamily AUL54_12255 PF00155 Aminotransferase class I and II AUL54_12270 PF01515 Phosphate acetyl/butaryl transferase AUL54_12275 PF03601 Conserved hypothetical protein 698 AUL54_12280 PF03466 LysR substrate binding domain AUL54_12280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AUL54_12285 PF03099 Biotin/lipoate A/B protein ligase family AUL54_12310 PF12679 ABC-2 family transporter protein AUL54_12315 PF00005 ABC transporter AUL54_12325 PF03551 Transcriptional regulator PadR-like family AUL54_12335 PF07293 Protein of unknown function (DUF1450) AUL54_12340 PF01966 HD domain AUL54_12350 PF13520 Amino acid permease AUL54_12355 PF01047 MarR family AUL54_12360 PF01361 Tautomerase enzyme AUL54_12365 PF02163 Peptidase family M50 AUL54_12370 PF08741 YwhD family AUL54_12380 PF00905 Penicillin binding protein transpeptidase domain AUL54_12380 PF00912 Transglycosylase AUL54_12385 PF17284 Spermidine synthase tetramerisation domain AUL54_12390 PF00491 Arginase family AUL54_12395 PF18801 response regulator aspartate phosphatase H, N terminal AUL54_12400 PF09148 Domain of unknown function (DUF1934) AUL54_12405 PF00750 tRNA synthetases class I (R) AUL54_12405 PF03485 Arginyl tRNA synthetase N terminal domain AUL54_12405 PF05746 DALR anticodon binding domain AUL54_12410 PF07690 Major Facilitator Superfamily AUL54_12415 PF00027 Cyclic nucleotide-binding domain AUL54_12415 PF00325 Bacterial regulatory proteins, crp family AUL54_12420 PF14256 YwiC-like protein AUL54_12430 PF00384 Molybdopterin oxidoreductase AUL54_12430 PF14710 Respiratory nitrate reductase alpha N-terminal AUL54_12430 PF01568 Molydopterin dinucleotide binding domain AUL54_12435 PF13247 4Fe-4S dicluster domain AUL54_12435 PF14711 Respiratory nitrate reductase beta C-terminal AUL54_12440 PF02613 Nitrate reductase delta subunit AUL54_12445 PF02665 Nitrate reductase gamma subunit AUL54_12455 PF13396 Phospholipase_D-nuclease N-terminal AUL54_12455 PF13091 PLD-like domain AUL54_12460 PF00005 ABC transporter AUL54_12460 PF00664 ABC transporter transmembrane region AUL54_12470 PF03851 UV-endonuclease UvdE AUL54_12475 PF13091 PLD-like domain AUL54_12480 PF13183 4Fe-4S dicluster domain AUL54_12480 PF02754 Cysteine-rich domain AUL54_12485 PF05066 HB1, ASXL, restriction endonuclease HTH domain AUL54_12490 PF00117 Glutamine amidotransferase class-I AUL54_12490 PF06418 CTP synthase N-terminus AUL54_12495 PF10740 Domain of unknown function (DUF2529) AUL54_12500 PF00072 Response regulator receiver domain AUL54_12505 PF01116 Fructose-bisphosphate aldolase class-II AUL54_12510 PF00923 Transaldolase/Fructose-6-phosphate aldolase AUL54_12515 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AUL54_12520 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded AUL54_12530 PF07498 Rho termination factor, N-terminal domain AUL54_12530 PF07497 Rho termination factor, RNA-binding domain AUL54_12530 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AUL54_12535 PF01197 Ribosomal protein L31 AUL54_12540 PF00265 Thymidine kinase AUL54_12545 PF00390 Malic enzyme, N-terminal domain AUL54_12545 PF03949 Malic enzyme, NAD binding domain AUL54_12550 PF03547 Membrane transport protein AUL54_12555 PF13411 MerR HTH family regulatory protein AUL54_12560 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AUL54_12565 PF03462 PCRF domain AUL54_12565 PF00472 RF-1 domain AUL54_12570 PF17827 PrmC N-terminal domain AUL54_12570 PF05175 Methyltransferase small domain AUL54_12575 PF17247 Family of unknown function (DUF5316) AUL54_12580 PF17094 Uncharacterised protein family (UPF0715) AUL54_12585 PF09551 Stage II sporulation protein R (spore_II_R) AUL54_12595 PF03481 Putative GTP-binding controlling metal-binding AUL54_12595 PF01300 Telomere recombination AUL54_12600 PF02659 Putative manganese efflux pump AUL54_12605 PF01451 Low molecular weight phosphotyrosine protein phosphatase AUL54_12610 PF02502 Ribose/Galactose Isomerase AUL54_12615 PF04260 Protein of unknown function (DUF436) AUL54_12620 PF00464 Serine hydroxymethyltransferase AUL54_12630 PF03899 ATP synthase I chain AUL54_12635 PF00119 ATP synthase A chain AUL54_12640 PF00137 ATP synthase subunit C AUL54_12645 PF00430 ATP synthase B/B' CF(0) AUL54_12650 PF00213 ATP synthase delta (OSCP) subunit AUL54_12655 PF02874 ATP synthase alpha/beta family, beta-barrel domain AUL54_12655 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AUL54_12655 PF00306 ATP synthase alpha/beta chain, C terminal domain AUL54_12660 PF00231 ATP synthase AUL54_12665 PF02874 ATP synthase alpha/beta family, beta-barrel domain AUL54_12665 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AUL54_12670 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AUL54_12670 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain AUL54_12680 PF06612 Protein of unknown function (DUF1146) AUL54_12685 PF08680 TATA-box binding AUL54_12690 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AUL54_12695 PF08486 Stage II sporulation protein AUL54_12700 PF00092 von Willebrand factor type A domain AUL54_12705 PF00092 von Willebrand factor type A domain AUL54_12710 PF02634 FdhD/NarQ family AUL54_12715 PF04055 Radical SAM superfamily AUL54_12715 PF06463 Molybdenum Cofactor Synthesis C AUL54_12720 PF17874 MalT-like TPR region AUL54_12720 PF18801 response regulator aspartate phosphatase H, N terminal AUL54_12730 PF05532 CsbD-like AUL54_12735 PF00547 Urease, gamma subunit AUL54_12740 PF00699 Urease beta subunit AUL54_12745 PF00449 Urease alpha-subunit, N-terminal domain AUL54_12745 PF01979 Amidohydrolase family AUL54_12750 PF02082 Transcriptional regulator AUL54_12755 PF00457 Glycosyl hydrolases family 11 AUL54_12760 PF17319 Family of unknown function (DUF5362) AUL54_12765 PF13396 Phospholipase_D-nuclease N-terminal AUL54_12765 PF13091 PLD-like domain AUL54_12770 PF17370 Family of unknown function (DUF5392) AUL54_12775 PF17319 Family of unknown function (DUF5362) AUL54_12780 PF00583 Acetyltransferase (GNAT) family AUL54_12785 PF01551 Peptidase family M23 AUL54_12790 PF04892 VanZ like family AUL54_12795 PF01569 PAP2 superfamily AUL54_12800 PF01098 Cell cycle protein AUL54_12805 PF00543 Nitrogen regulatory protein P-II AUL54_12810 PF00909 Ammonium Transporter Family AUL54_12815 PF00857 Isochorismatase family AUL54_12820 PF07690 Major Facilitator Superfamily AUL54_12825 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin AUL54_12830 PF07690 Major Facilitator Superfamily AUL54_12835 PF01047 MarR family AUL54_12840 PF12116 Stage III sporulation protein D AUL54_12850 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AUL54_12850 PF00460 Flagella basal body rod protein AUL54_12855 PF00460 Flagella basal body rod protein AUL54_12855 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AUL54_12860 PF18801 response regulator aspartate phosphatase H, N terminal AUL54_12865 PF07977 FabA-like domain AUL54_12870 PF01741 Large-conductance mechanosensitive channel, MscL AUL54_12875 PF14183 YwpF-like protein AUL54_12890 PF08220 DeoR-like helix-turn-helix domain AUL54_12890 PF00455 DeoR C terminal sensor domain AUL54_12900 PF12419 SNF2 Helicase protein AUL54_12900 PF00176 SNF2 family N-terminal domain AUL54_12900 PF00271 Helicase conserved C-terminal domain AUL54_12905 PF04434 SWIM zinc finger AUL54_12915 PF02706 Chain length determinant protein AUL54_12915 PF13807 G-rich domain on putative tyrosine kinase AUL54_12920 PF13614 AAA domain AUL54_12930 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AUL54_12930 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AUL54_12930 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AUL54_12935 PF16888 Domain of unknown function (DUF5082) AUL54_12945 PF14449 Pre-toxin TG AUL54_12945 PF04740 LXG domain of WXG superfamily AUL54_12945 PF14431 YwqJ-like deaminase AUL54_12965 PF02417 Chromate transporter AUL54_12970 PF02417 Chromate transporter AUL54_12975 PF13404 AsnC-type helix-turn-helix domain AUL54_12975 PF01037 Lrp/AsnC ligand binding domain AUL54_12990 PF01613 Flavin reductase like domain AUL54_13000 PF08757 CotH kinase protein AUL54_13015 PF02040 Arsenical pump membrane protein AUL54_13020 PF03466 LysR substrate binding domain AUL54_13020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AUL54_13025 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AUL54_13025 PF00205 Thiamine pyrophosphate enzyme, central domain AUL54_13025 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AUL54_13030 PF03306 Alpha-acetolactate decarboxylase AUL54_13035 PF02525 Flavodoxin-like fold AUL54_13040 PF08239 Bacterial SH3 domain AUL54_13045 PF13407 Periplasmic binding protein domain AUL54_13050 PF02653 Branched-chain amino acid transport system / permease component AUL54_13055 PF00005 ABC transporter AUL54_13060 PF05025 RbsD / FucU transport protein family AUL54_13065 PF00294 pfkB family carbohydrate kinase AUL54_13070 PF00356 Bacterial regulatory proteins, lacI family AUL54_13080 PF08245 Mur ligase middle domain AUL54_13085 PF14102 Capsule biosynthesis CapC AUL54_13090 PF09587 Bacterial capsule synthesis protein PGA_cap AUL54_13095 PF00877 NlpC/P60 family AUL54_13100 PF04791 LMBR1-like membrane protein AUL54_13110 PF03816 Cell envelope-related transcriptional attenuator domain AUL54_13115 PF00083 Sugar (and other) transporter AUL54_13120 PF00535 Glycosyl transferase family 2 AUL54_13125 PF05504 Spore germination B3/ GerAC like, C-terminal AUL54_13130 PF03845 Spore germination protein AUL54_13135 PF03323 Bacillus/Clostridium GerA spore germination protein AUL54_13140 PF01238 Phosphomannose isomerase type I AUL54_13145 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AUL54_13145 PF05036 Sporulation related domain AUL54_13145 PF08239 Bacterial SH3 domain AUL54_13150 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase AUL54_13155 PF03808 Glycosyl transferase WecB/TagA/CpsF family AUL54_13160 PF01467 Cytidylyltransferase-like AUL54_13165 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 AUL54_13165 PF00535 Glycosyl transferase family 2 AUL54_13170 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase AUL54_13175 PF01061 ABC-2 type transporter AUL54_13180 PF00005 ABC transporter AUL54_13185 PF00483 Nucleotidyl transferase AUL54_13190 PF02350 UDP-N-acetylglucosamine 2-epimerase AUL54_13195 PF03816 Cell envelope-related transcriptional attenuator domain AUL54_13205 PF08486 Stage II sporulation protein AUL54_13205 PF04122 Putative cell wall binding repeat 2 AUL54_13210 PF01520 N-acetylmuramoyl-L-alanine amidase AUL54_13210 PF04122 Putative cell wall binding repeat 2 AUL54_13215 PF02397 Bacterial sugar transferase AUL54_13220 PF14667 Polysaccharide biosynthesis C-terminal domain AUL54_13220 PF01943 Polysaccharide biosynthesis protein AUL54_13225 PF13439 Glycosyltransferase Family 4 AUL54_13225 PF00534 Glycosyl transferases group 1 AUL54_13230 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AUL54_13230 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AUL54_13230 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AUL54_13235 PF04932 O-Antigen ligase AUL54_13240 PF02706 Chain length determinant protein AUL54_13245 PF00535 Glycosyl transferase family 2 AUL54_13255 PF00953 Glycosyl transferase family 4 AUL54_13260 PF03816 Cell envelope-related transcriptional attenuator domain AUL54_13265 PF01205 Uncharacterized protein family UPF0029 AUL54_13265 PF09186 Domain of unknown function (DUF1949) AUL54_13270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AUL54_13270 PF07730 Histidine kinase AUL54_13270 PF05384 Sensor protein DegS AUL54_13275 PF00072 Response regulator receiver domain AUL54_13275 PF00196 Bacterial regulatory proteins, luxR family AUL54_13280 PF02645 Uncharacterised protein, DegV family COG1307 AUL54_13285 PF00271 Helicase conserved C-terminal domain AUL54_13285 PF04851 Type III restriction enzyme, res subunit AUL54_13290 PF10719 Late competence development protein ComFB AUL54_13305 PF04316 Anti-sigma-28 factor, FlgM AUL54_13310 PF05130 FlgN protein AUL54_13315 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AUL54_13315 PF00460 Flagella basal body rod protein AUL54_13320 PF00669 Bacterial flagellin N-terminal helical region AUL54_13320 PF00700 Bacterial flagellin C-terminal helical region AUL54_13330 PF02623 FliW protein AUL54_13335 PF02599 Global regulator protein family AUL54_13340 PF00700 Bacterial flagellin C-terminal helical region AUL54_13340 PF00669 Bacterial flagellin N-terminal helical region AUL54_13345 PF02465 Flagellar hook-associated protein 2 N-terminus AUL54_13345 PF07196 Flagellin hook IN motif AUL54_13345 PF07195 Flagellar hook-associated protein 2 C-terminus AUL54_13350 PF02561 Flagellar protein FliS AUL54_13365 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein AUL54_13365 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus AUL54_13370 PF07516 SecA Wing and Scaffold domain AUL54_13370 PF02810 SEC-C motif AUL54_13370 PF07517 SecA DEAD-like domain AUL54_13370 PF01043 SecA preprotein cross-linking domain AUL54_13375 PF00472 RF-1 domain AUL54_13375 PF03462 PCRF domain AUL54_13380 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AUL54_13380 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AUL54_13385 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AUL54_13390 PF00005 ABC transporter AUL54_13395 PF18075 FtsX extracellular domain AUL54_13395 PF02687 FtsX-like permease family AUL54_13400 PF13229 Right handed beta helix region AUL54_13405 PF03572 Peptidase family S41 AUL54_13405 PF17820 PDZ domain AUL54_13405 PF01471 Putative peptidoglycan binding domain AUL54_13410 PF17423 Swarming motility protein AUL54_13415 PF17820 PDZ domain AUL54_13425 PF07690 Major Facilitator Superfamily AUL54_13430 PF00440 Bacterial regulatory proteins, tetR family AUL54_13435 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AUL54_13435 PF00391 PEP-utilising enzyme, mobile domain AUL54_13440 PF09964 Uncharacterized protein conserved in bacteria (DUF2198) AUL54_13445 PF04851 Type III restriction enzyme, res subunit AUL54_13445 PF00271 Helicase conserved C-terminal domain AUL54_13445 PF12344 Ultra-violet resistance protein B AUL54_13445 PF17757 UvrB interaction domain AUL54_13445 PF02151 UvrB/uvrC motif AUL54_13450 PF17755 UvrA DNA-binding domain AUL54_13450 PF17760 UvrA interaction domain AUL54_13450 PF00005 ABC transporter AUL54_13465 PF13349 Putative adhesin AUL54_13470 PF04024 PspC domain AUL54_13475 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV AUL54_13480 PF00149 Calcineurin-like phosphoesterase AUL54_13485 PF00440 Bacterial regulatory proteins, tetR family AUL54_13495 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase AUL54_13500 PF01979 Amidohydrolase family AUL54_13505 PF02603 HPr Serine kinase N terminus AUL54_13505 PF07475 HPr Serine kinase C-terminal domain AUL54_13510 PF01790 Prolipoprotein diacylglyceryl transferase AUL54_13515 PF13419 Haloacid dehalogenase-like hydrolase AUL54_13520 PF14602 Hexapeptide repeat of succinyl-transferase AUL54_13525 PF13529 Peptidase_C39 like family AUL54_13530 PF13393 Histidyl-tRNA synthetase AUL54_13535 PF01634 ATP phosphoribosyltransferase AUL54_13540 PF00815 Histidinol dehydrogenase AUL54_13545 PF00475 Imidazoleglycerol-phosphate dehydratase AUL54_13550 PF00117 Glutamine amidotransferase class-I AUL54_13555 PF00977 Histidine biosynthesis protein AUL54_13560 PF00977 Histidine biosynthesis protein AUL54_13565 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AUL54_13565 PF01502 Phosphoribosyl-AMP cyclohydrolase AUL54_13570 PF00664 ABC transporter transmembrane region AUL54_13570 PF00005 ABC transporter AUL54_13580 PF00486 Transcriptional regulatory protein, C terminal AUL54_13580 PF00072 Response regulator receiver domain AUL54_13585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AUL54_13585 PF00672 HAMP domain AUL54_13585 PF00512 His Kinase A (phospho-acceptor) domain AUL54_13585 PF13426 PAS domain AUL54_13600 PF00877 NlpC/P60 family AUL54_13605 PF07992 Pyridine nucleotide-disulphide oxidoreductase AUL54_13610 PF00293 NUDIX domain AUL54_13615 PF03668 P-loop ATPase protein family AUL54_13620 PF01933 Uncharacterised protein family UPF0052 AUL54_13625 PF10298 WhiA N-terminal LAGLIDADG-like domain AUL54_13625 PF14527 WhiA LAGLIDADG-like domain AUL54_13625 PF02650 WhiA C-terminal HTH domain AUL54_13630 PF00381 PTS HPr component phosphorylation site AUL54_13635 PF00797 N-acetyltransferase AUL54_13640 PF00545 ribonuclease AUL54_13645 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AUL54_13645 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AUL54_13650 PF00484 Carbonic anhydrase AUL54_13655 PF00916 Sulfate permease family AUL54_13655 PF01740 STAS domain AUL54_13660 PF03819 MazG nucleotide pyrophosphohydrolase domain AUL54_13665 PF03641 Possible lysine decarboxylase AUL54_13675 PF00083 Sugar (and other) transporter AUL54_13680 PF04303 PrpF protein AUL54_13685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AUL54_13685 PF03466 LysR substrate binding domain AUL54_13690 PF00574 Clp protease AUL54_13695 PF00356 Bacterial regulatory proteins, lacI family AUL54_13700 PF01306 LacY proton/sugar symporter AUL54_13705 PF08244 Glycosyl hydrolases family 32 C terminal AUL54_13705 PF00251 Glycosyl hydrolases family 32 N-terminal domain AUL54_13765 PF05870 Phenolic acid decarboxylase (PAD) AUL54_13770 PF00583 Acetyltransferase (GNAT) family AUL54_13780 PF01872 RibD C-terminal domain AUL54_13790 PF00135 Carboxylesterase family AUL54_13795 PF01381 Helix-turn-helix AUL54_13795 PF08671 Anti-repressor SinI AUL54_13800 PF02706 Chain length determinant protein AUL54_13805 PF13614 AAA domain AUL54_13810 PF02719 Polysaccharide biosynthesis protein AUL54_13815 PF13439 Glycosyltransferase Family 4 AUL54_13815 PF00534 Glycosyl transferases group 1 AUL54_13820 PF00535 Glycosyl transferase family 2 AUL54_13825 PF00534 Glycosyl transferases group 1 AUL54_13825 PF13439 Glycosyltransferase Family 4 AUL54_13835 PF00535 Glycosyl transferase family 2 AUL54_13840 PF04230 Polysaccharide pyruvyl transferase AUL54_13845 PF00535 Glycosyl transferase family 2 AUL54_13850 PF01943 Polysaccharide biosynthesis protein AUL54_13850 PF14667 Polysaccharide biosynthesis C-terminal domain AUL54_13855 PF02397 Bacterial sugar transferase AUL54_13860 PF00132 Bacterial transferase hexapeptide (six repeats) AUL54_13860 PF17836 PglD N-terminal domain AUL54_13865 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AUL54_13870 PF04230 Polysaccharide pyruvyl transferase AUL54_13875 PF09628 YvfG protein AUL54_13880 PF00309 Sigma-54 factor, Activator interacting domain (AID) AUL54_13880 PF04963 Sigma-54 factor, core binding domain AUL54_13880 PF04552 Sigma-54, DNA binding domain AUL54_13885 PF02652 L-lactate permease AUL54_13890 PF00392 Bacterial regulatory proteins, gntR family AUL54_13890 PF07729 FCD domain AUL54_13895 PF00155 Aminotransferase class I and II AUL54_13900 PF02754 Cysteine-rich domain AUL54_13905 PF11870 Domain of unknown function (DUF3390) AUL54_13905 PF13183 4Fe-4S dicluster domain AUL54_13905 PF02589 LUD domain AUL54_13910 PF02589 LUD domain AUL54_13915 PF02447 GntP family permease AUL54_13920 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AUL54_13920 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AUL54_13925 PF01418 Helix-turn-helix domain, rpiR family AUL54_13925 PF01380 SIS domain AUL54_13930 PF00324 Amino acid permease AUL54_13940 PF13333 Integrase core domain AUL54_13940 PF00665 Integrase core domain AUL54_13940 PF13276 HTH-like domain AUL54_13945 PF00892 EamA-like transporter family AUL54_13950 PF03466 LysR substrate binding domain AUL54_13950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AUL54_13960 PF00296 Luciferase-like monooxygenase AUL54_13965 PF00392 Bacterial regulatory proteins, gntR family AUL54_13970 PF00083 Sugar (and other) transporter AUL54_13975 PF04198 Putative sugar-binding domain AUL54_13980 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AUL54_13980 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AUL54_13985 PF00162 Phosphoglycerate kinase AUL54_13990 PF00121 Triosephosphate isomerase AUL54_13995 PF06415 BPG-independent PGAM N-terminus (iPGM_N) AUL54_13995 PF01676 Metalloenzyme superfamily AUL54_14000 PF00113 Enolase, C-terminal TIM barrel domain AUL54_14000 PF03952 Enolase, N-terminal domain AUL54_14005 PF00583 Acetyltransferase (GNAT) family AUL54_14010 PF13240 zinc-ribbon domain AUL54_14025 PF01914 MarC family integral membrane protein AUL54_14030 PF12802 MarR family AUL54_14035 PF00571 CBS domain AUL54_14035 PF00005 ABC transporter AUL54_14040 PF00528 Binding-protein-dependent transport system inner membrane component AUL54_14045 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AUL54_14050 PF00528 Binding-protein-dependent transport system inner membrane component AUL54_14055 PF12802 MarR family AUL54_14060 PF00571 CBS domain AUL54_14060 PF00005 ABC transporter AUL54_14070 PF04069 Substrate binding domain of ABC-type glycine betaine transport system AUL54_14075 PF00528 Binding-protein-dependent transport system inner membrane component AUL54_14080 PF00005 ABC transporter AUL54_14095 PF00486 Transcriptional regulatory protein, C terminal AUL54_14095 PF00072 Response regulator receiver domain AUL54_14100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AUL54_14100 PF00512 His Kinase A (phospho-acceptor) domain AUL54_14105 PF01638 HxlR-like helix-turn-helix AUL54_14120 PF01381 Helix-turn-helix AUL54_14125 PF03840 Preprotein translocase SecG subunit AUL54_14130 PF12146 Serine aminopeptidase, S33 AUL54_14135 PF17876 Cold shock domain AUL54_14135 PF00773 RNB domain AUL54_14135 PF00575 S1 RNA binding domain AUL54_14135 PF08206 Ribonuclease B OB domain AUL54_14140 PF01668 SmpB protein AUL54_14170 PF01337 Barstar (barnase inhibitor) AUL54_14175 PF00106 short chain dehydrogenase AUL54_14180 PF03466 LysR substrate binding domain AUL54_14180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AUL54_14185 PF00583 Acetyltransferase (GNAT) family AUL54_14190 PF00497 Bacterial extracellular solute-binding proteins, family 3 AUL54_14195 PF00497 Bacterial extracellular solute-binding proteins, family 3 AUL54_14200 PF00528 Binding-protein-dependent transport system inner membrane component AUL54_14205 PF00528 Binding-protein-dependent transport system inner membrane component AUL54_14210 PF00005 ABC transporter AUL54_14215 PF00296 Luciferase-like monooxygenase AUL54_14220 PF00462 Glutaredoxin AUL54_14225 PF00296 Luciferase-like monooxygenase AUL54_14240 PF07690 Major Facilitator Superfamily AUL54_14250 PF02525 Flavodoxin-like fold AUL54_14255 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AUL54_14255 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AUL54_14260 PF02583 Metal-sensitive transcriptional repressor AUL54_14265 PF00403 Heavy-metal-associated domain AUL54_14270 PF00403 Heavy-metal-associated domain AUL54_14275 PF00403 Heavy-metal-associated domain AUL54_14280 PF13462 Thioredoxin AUL54_14285 PF02600 Disulfide bond formation protein DsbB AUL54_14295 PF03458 UPF0126 domain AUL54_14300 PF13538 UvrD-like helicase C-terminal domain AUL54_14305 PF00667 FAD binding domain AUL54_14305 PF00258 Flavodoxin AUL54_14305 PF00175 Oxidoreductase NAD-binding domain AUL54_14310 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AUL54_14310 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AUL54_14315 PF00999 Sodium/hydrogen exchanger family AUL54_14325 PF00248 Aldo/keto reductase family AUL54_14340 PF00005 ABC transporter AUL54_14345 PF07730 Histidine kinase AUL54_14345 PF13675 Type IV pili methyl-accepting chemotaxis transducer N-term AUL54_14345 PF00672 HAMP domain AUL54_14345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AUL54_14350 PF00072 Response regulator receiver domain AUL54_14350 PF00196 Bacterial regulatory proteins, luxR family AUL54_14355 PF00528 Binding-protein-dependent transport system inner membrane component AUL54_14365 PF12727 PBP superfamily domain AUL54_14365 PF12728 Helix-turn-helix domain AUL54_14370 PF00884 Sulfatase AUL54_14375 PF04307 LexA-binding, inner membrane-associated putative hydrolase AUL54_14380 PF09575 Small spore protein J (Spore_SspJ) AUL54_14385 PF13520 Amino acid permease AUL54_14390 PF04072 Leucine carboxyl methyltransferase AUL54_14395 PF01497 Periplasmic binding protein AUL54_14400 PF01032 FecCD transport family AUL54_14405 PF01032 FecCD transport family AUL54_14410 PF00005 ABC transporter AUL54_14415 PF14184 Regulatory protein YrvL AUL54_14420 PF00190 Cupin AUL54_14425 PF04545 Sigma-70, region 4 AUL54_14435 PF00486 Transcriptional regulatory protein, C terminal AUL54_14435 PF00072 Response regulator receiver domain AUL54_14440 PF00512 His Kinase A (phospho-acceptor) domain AUL54_14440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AUL54_14445 PF08450 SMP-30/Gluconolactonase/LRE-like region AUL54_14450 PF00106 short chain dehydrogenase AUL54_14455 PF01497 Periplasmic binding protein AUL54_14460 PF01032 FecCD transport family AUL54_14465 PF00005 ABC transporter AUL54_14470 PF01923 Cobalamin adenosyltransferase AUL54_14475 PF07690 Major Facilitator Superfamily AUL54_14485 PF04012 PspA/IM30 family AUL54_14490 PF13349 Putative adhesin AUL54_14495 PF09922 Cell wall-active antibiotics response 4TMS YvqF AUL54_14500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AUL54_14500 PF07730 Histidine kinase AUL54_14500 PF00672 HAMP domain AUL54_14505 PF00196 Bacterial regulatory proteins, luxR family AUL54_14505 PF00072 Response regulator receiver domain AUL54_14510 PF05504 Spore germination B3/ GerAC like, C-terminal AUL54_14515 PF03845 Spore germination protein AUL54_14520 PF03323 Bacillus/Clostridium GerA spore germination protein AUL54_14525 PF13113 Protein of unknown function (DUF3970) AUL54_14530 PF00206 Lyase AUL54_14530 PF10415 Fumarase C C-terminus AUL54_14535 PF00440 Bacterial regulatory proteins, tetR family AUL54_14540 PF00512 His Kinase A (phospho-acceptor) domain AUL54_14540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AUL54_14540 PF00672 HAMP domain AUL54_14545 PF00072 Response regulator receiver domain AUL54_14545 PF00486 Transcriptional regulatory protein, C terminal AUL54_14550 PF13180 PDZ domain AUL54_14555 PF00210 Ferritin-like domain AUL54_14560 PF00106 short chain dehydrogenase AUL54_14570 PF14039 YusW-like protein AUL54_14575 PF00005 ABC transporter AUL54_14580 PF10835 Protein of unknown function (DUF2573) AUL54_14595 PF14552 Tautomerase enzyme AUL54_14600 PF07690 Major Facilitator Superfamily AUL54_14605 PF01047 MarR family AUL54_14610 PF07875 Coat F domain AUL54_14620 PF01619 Proline dehydrogenase AUL54_14625 PF14115 YuzL-like protein AUL54_14630 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AUL54_14630 PF00378 Enoyl-CoA hydratase/isomerase AUL54_14630 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AUL54_14635 PF00108 Thiolase, N-terminal domain AUL54_14635 PF02803 Thiolase, C-terminal domain AUL54_14640 PF02770 Acyl-CoA dehydrogenase, middle domain AUL54_14640 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AUL54_14640 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AUL54_14645 PF03960 ArsC family AUL54_14650 PF01597 Glycine cleavage H-protein AUL54_14655 PF10830 Protein of unknown function (DUF2553) AUL54_14660 PF01751 Toprim domain AUL54_14665 PF00085 Thioredoxin AUL54_14670 PF02036 SCP-2 sterol transfer family AUL54_14675 PF09383 NIL domain AUL54_14675 PF00005 ABC transporter AUL54_14680 PF00528 Binding-protein-dependent transport system inner membrane component AUL54_14685 PF03180 NLPA lipoprotein AUL54_14690 PF02627 Carboxymuconolactone decarboxylase family AUL54_14695 PF00005 ABC transporter AUL54_14700 PF01458 Uncharacterized protein family (UPF0051) AUL54_14705 PF00266 Aminotransferase class-V AUL54_14710 PF01592 NifU-like N terminal domain AUL54_14715 PF01458 Uncharacterized protein family (UPF0051) AUL54_14735 PF01476 LysM domain AUL54_14735 PF05257 CHAP domain AUL54_14750 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AUL54_14755 PF07451 Stage V sporulation protein AD (SpoVAD) AUL54_14760 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AUL54_14770 PF04239 Protein of unknown function (DUF421) AUL54_14775 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH AUL54_14775 PF04740 LXG domain of WXG superfamily AUL54_14790 PF10903 Protein of unknown function (DUF2691) AUL54_14800 PF01266 FAD dependent oxidoreductase AUL54_14805 PF01541 GIY-YIG catalytic domain AUL54_14810 PF07853 Protein of unknown function (DUF1648) AUL54_14830 PF13411 MerR HTH family regulatory protein AUL54_14835 PF01380 SIS domain AUL54_14840 PF01547 Bacterial extracellular solute-binding protein AUL54_14845 PF00528 Binding-protein-dependent transport system inner membrane component AUL54_14850 PF00528 Binding-protein-dependent transport system inner membrane component AUL54_14855 PF00294 pfkB family carbohydrate kinase AUL54_14860 PF07702 UTRA domain AUL54_14860 PF00392 Bacterial regulatory proteins, gntR family AUL54_14865 PF17912 MalK OB fold domain AUL54_14865 PF00005 ABC transporter AUL54_14865 PF03459 TOBE domain AUL54_14870 PF00005 ABC transporter AUL54_14875 PF00528 Binding-protein-dependent transport system inner membrane component AUL54_14880 PF09084 NMT1/THI5 like AUL54_14890 PF04231 Endonuclease I AUL54_14895 PF01546 Peptidase family M20/M25/M40 AUL54_14900 PF00266 Aminotransferase class-V AUL54_14905 PF02625 XdhC and CoxI family AUL54_14905 PF13478 XdhC Rossmann domain AUL54_14910 PF12804 MobA-like NTP transferase domain AUL54_14920 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AUL54_14920 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AUL54_14925 PF01799 [2Fe-2S] binding domain AUL54_14925 PF00111 2Fe-2S iron-sulfur cluster binding domain AUL54_14930 PF01177 Asp/Glu/Hydantoin racemase AUL54_14935 PF00576 HIUase/Transthyretin family AUL54_14940 PF09349 OHCU decarboxylase AUL54_14940 PF01014 Uricase AUL54_14945 PF00860 Permease family AUL54_14950 PF00860 Permease family AUL54_14955 PF07905 Purine catabolism regulatory protein-like family AUL54_14955 PF13556 PucR C-terminal helix-turn-helix domain AUL54_14955 PF17853 GGDEF-like domain AUL54_14960 PF01979 Amidohydrolase family AUL54_14970 PF01904 Protein of unknown function DUF72 AUL54_14975 PF01925 Sulfite exporter TauE/SafE AUL54_14980 PF02872 5'-nucleotidase, C-terminal domain AUL54_14985 PF09560 Sporulation protein YunB (Spo_YunB) AUL54_14990 PF01551 Peptidase family M23 AUL54_14995 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AUL54_14995 PF04055 Radical SAM superfamily AUL54_15000 PF06265 Protein of unknown function (DUF1027) AUL54_15005 PF01934 Protein of unknown function DUF86 AUL54_15010 PF13344 Haloacid dehalogenase-like hydrolase AUL54_15015 PF04608 Phosphatidylglycerophosphatase A AUL54_15025 PF03447 Homoserine dehydrogenase, NAD binding domain AUL54_15025 PF00742 Homoserine dehydrogenase AUL54_15025 PF01842 ACT domain AUL54_15030 PF00291 Pyridoxal-phosphate dependent enzyme AUL54_15035 PF00288 GHMP kinases N terminal domain AUL54_15035 PF08544 GHMP kinases C terminal AUL54_15040 PF07676 WD40-like Beta Propeller Repeat AUL54_15040 PF00326 Prolyl oligopeptidase family AUL54_15045 PF01106 NifU-like domain AUL54_15050 PF07315 Protein of unknown function (DUF1462) AUL54_15055 PF07992 Pyridine nucleotide-disulphide oxidoreductase AUL54_15060 PF07293 Protein of unknown function (DUF1450) AUL54_15065 PF07662 Na+ dependent nucleoside transporter C-terminus AUL54_15065 PF01773 Na+ dependent nucleoside transporter N-terminus AUL54_15070 PF01678 Diaminopimelate epimerase AUL54_15075 PF01521 Iron-sulphur cluster biosynthesis AUL54_15080 PF00106 short chain dehydrogenase AUL54_15105 PF00005 ABC transporter AUL54_15120 PF00478 IMP dehydrogenase / GMP reductase domain AUL54_15125 PF07992 Pyridine nucleotide-disulphide oxidoreductase AUL54_15135 PF07992 Pyridine nucleotide-disulphide oxidoreductase AUL54_15140 PF14068 Putative membrane protein AUL54_15145 PF06725 3D domain AUL54_15150 PF02681 Divergent PAP2 family AUL54_15155 PF00883 Cytosol aminopeptidase family, catalytic domain AUL54_15155 PF02789 Cytosol aminopeptidase family, N-terminal domain AUL54_15160 PF13726 Na+-H+ antiporter family AUL54_15160 PF03553 Na+/H+ antiporter family AUL54_15165 PF02632 BioY family AUL54_15170 PF00174 Oxidoreductase molybdopterin binding domain AUL54_15175 PF00756 Putative esterase AUL54_15180 PF00106 short chain dehydrogenase AUL54_15185 PF00425 chorismate binding enzyme AUL54_15190 PF13193 AMP-binding enzyme C-terminal domain AUL54_15190 PF00501 AMP-binding enzyme AUL54_15195 PF00857 Isochorismatase family AUL54_15195 PF00550 Phosphopantetheine attachment site AUL54_15200 PF00975 Thioesterase domain AUL54_15200 PF00550 Phosphopantetheine attachment site AUL54_15200 PF00668 Condensation domain AUL54_15200 PF13193 AMP-binding enzyme C-terminal domain AUL54_15200 PF00501 AMP-binding enzyme AUL54_15205 PF03621 MbtH-like protein AUL54_15210 PF10042 Uncharacterized conserved protein (DUF2278) AUL54_15215 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AUL54_15215 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AUL54_15220 PF13556 PucR C-terminal helix-turn-helix domain AUL54_15220 PF06018 CodY GAF-like domain AUL54_15220 PF17853 GGDEF-like domain AUL54_15225 PF06013 Proteins of 100 residues with WXG AUL54_15230 PF08817 WXG100 protein secretion system (Wss), protein YukD AUL54_15235 PF10140 WXG100 protein secretion system (Wss), protein YukC AUL54_15240 PF12538 DNA transporter AUL54_15240 PF01580 FtsK/SpoIIIE family AUL54_15250 PF17355 Family of unknown function (DUF5383) AUL54_15255 PF00106 short chain dehydrogenase AUL54_15260 PF01966 HD domain AUL54_15265 PF10842 Protein of unknown function (DUF2642) AUL54_15270 PF01594 AI-2E family transporter AUL54_15275 PF10676 Spore germination protein gerPA/gerPF AUL54_15280 PF14166 YueH-like protein AUL54_15285 PF07997 Protein of unknown function (DUF1694) AUL54_15290 PF00857 Isochorismatase family AUL54_15295 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AUL54_15295 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain AUL54_15295 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AUL54_15300 PF08668 HDOD domain AUL54_15300 PF00563 EAL domain AUL54_15310 PF08181 DegQ (SacQ) family AUL54_15315 PF00348 Polyprenyl synthetase AUL54_15320 PF05952 Bacillus competence pheromone ComX AUL54_15325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AUL54_15325 PF07730 Histidine kinase AUL54_15330 PF00072 Response regulator receiver domain AUL54_15330 PF00196 Bacterial regulatory proteins, luxR family AUL54_15335 PF03061 Thioesterase superfamily AUL54_15340 PF03334 Na+/H+ antiporter subunit AUL54_15345 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AUL54_15350 PF01899 Na+/H+ ion antiporter subunit AUL54_15355 PF00361 Proton-conducting membrane transporter AUL54_15360 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AUL54_15365 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AUL54_15370 PF00361 Proton-conducting membrane transporter AUL54_15370 PF13244 Domain of unknown function (DUF4040) AUL54_15370 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AUL54_15400 PF00072 Response regulator receiver domain AUL54_15405 PF00989 PAS fold AUL54_15405 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AUL54_15405 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AUL54_15405 PF17203 Single cache domain 3 AUL54_15410 PF17328 Family of unknown function (DUF5366) AUL54_15415 PF04134 Protein of unknown function, DUF393 AUL54_15420 PF00912 Transglycosylase AUL54_15420 PF00905 Penicillin binding protein transpeptidase domain AUL54_15425 PF07690 Major Facilitator Superfamily AUL54_15430 PF00929 Exonuclease AUL54_15435 PF08810 Kinase associated protein B AUL54_15440 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AUL54_15440 PF00512 His Kinase A (phospho-acceptor) domain AUL54_15445 PF00155 Aminotransferase class I and II AUL54_15450 PF08958 Domain of unknown function (DUF1871) AUL54_15455 PF00561 alpha/beta hydrolase fold AUL54_15455 PF08386 TAP-like protein AUL54_15460 PF01037 Lrp/AsnC ligand binding domain AUL54_15465 PF00155 Aminotransferase class I and II AUL54_15470 PF00575 S1 RNA binding domain AUL54_15475 PF04070 Domain of unknown function (DUF378) AUL54_15480 PF00465 Iron-containing alcohol dehydrogenase AUL54_15485 PF00465 Iron-containing alcohol dehydrogenase AUL54_15490 PF00857 Isochorismatase family AUL54_15500 PF00342 Phosphoglucose isomerase AUL54_15510 PF08868 YugN-like family AUL54_15515 PF07885 Ion channel AUL54_15515 PF02254 TrkA-N domain AUL54_15520 PF11458 Membrane-integrating protein Mistic AUL54_15530 PF04298 Putative neutral zinc metallopeptidase AUL54_15535 PF03471 Transporter associated domain AUL54_15535 PF00571 CBS domain AUL54_15535 PF01595 Cyclin M transmembrane N-terminal domain AUL54_15540 PF00128 Alpha amylase, catalytic domain AUL54_15540 PF16657 Maltogenic Amylase, C-terminal domain AUL54_15545 PF01894 Uncharacterised protein family UPF0047 AUL54_15550 PF03060 Nitronate monooxygenase AUL54_15565 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AUL54_15565 PF00672 HAMP domain AUL54_15565 PF02743 Cache domain AUL54_15570 PF00672 HAMP domain AUL54_15570 PF02743 Cache domain AUL54_15570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AUL54_15575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AUL54_15575 PF02743 Cache domain AUL54_15575 PF00672 HAMP domain AUL54_15580 PF02743 Cache domain AUL54_15580 PF00672 HAMP domain AUL54_15580 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AUL54_15585 PF01965 DJ-1/PfpI family AUL54_15590 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AUL54_15590 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AUL54_15595 PF01594 AI-2E family transporter AUL54_15600 PF02673 Bacitracin resistance protein BacA AUL54_15620 PF13176 Tetratricopeptide repeat AUL54_15620 PF18801 response regulator aspartate phosphatase H, N terminal AUL54_15640 PF00175 Oxidoreductase NAD-binding domain AUL54_15640 PF00042 Globin AUL54_15640 PF00970 Oxidoreductase FAD-binding domain AUL54_15645 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AUL54_15645 PF13457 GW (Gly-Tryp) dipeptide domain AUL54_15650 PF02080 TrkA-C domain AUL54_15650 PF02254 TrkA-N domain AUL54_15655 PF17735 Biofilm surface layer A AUL54_15670 PF00465 Iron-containing alcohol dehydrogenase AUL54_15680 PF12867 DinB superfamily AUL54_15695 PF09515 Thiamine transporter protein (Thia_YuaJ) AUL54_15820 PF03073 TspO/MBR family AUL54_15825 PF01258 Prokaryotic dksA/traR C4-type zinc finger AUL54_15830 PF00425 chorismate binding enzyme AUL54_15835 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AUL54_15835 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AUL54_15835 PF16582 Middle domain of thiamine pyrophosphate AUL54_15840 PF00561 alpha/beta hydrolase fold AUL54_15845 PF00378 Enoyl-CoA hydratase/isomerase AUL54_15850 PF00501 AMP-binding enzyme AUL54_15850 PF13193 AMP-binding enzyme C-terminal domain AUL54_15855 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AUL54_15855 PF13378 Enolase C-terminal domain-like AUL54_15865 PF02322 Cytochrome bd terminal oxidase subunit II AUL54_15870 PF01654 Cytochrome bd terminal oxidase subunit I AUL54_15875 PF01197 Ribosomal protein L31 AUL54_15880 PF00484 Carbonic anhydrase AUL54_15885 PF01809 Putative membrane protein insertion efficiency factor AUL54_15890 PF02664 S-Ribosylhomocysteinase (LuxS) AUL54_15895 PF13115 YtkA-like AUL54_15905 PF00210 Ferritin-like domain AUL54_15910 PF05105 Bacteriophage holin family AUL54_15915 PF00293 NUDIX domain AUL54_15920 PF00528 Binding-protein-dependent transport system inner membrane component AUL54_15925 PF00005 ABC transporter AUL54_15935 PF00326 Prolyl oligopeptidase family AUL54_15940 PF10763 Protein of unknown function (DUF2584) AUL54_15945 PF01293 Phosphoenolpyruvate carboxykinase AUL54_15950 PF02773 S-adenosylmethionine synthetase, C-terminal domain AUL54_15950 PF02772 S-adenosylmethionine synthetase, central domain AUL54_15950 PF00438 S-adenosylmethionine synthetase, N-terminal domain AUL54_15955 PF13537 Glutamine amidotransferase domain AUL54_15955 PF00733 Asparagine synthase AUL54_15960 PF00324 Amino acid permease AUL54_15965 PF00132 Bacterial transferase hexapeptide (six repeats) AUL54_15970 PF12146 Serine aminopeptidase, S33 AUL54_15975 PF10776 Protein of unknown function (DUF2600) AUL54_15980 PF03009 Glycerophosphoryl diester phosphodiesterase family AUL54_15990 PF06962 Putative rRNA methylase AUL54_15995 PF04055 Radical SAM superfamily AUL54_15995 PF16199 Radical_SAM C-terminal domain AUL54_16000 PF07690 Major Facilitator Superfamily AUL54_16005 PF01022 Bacterial regulatory protein, arsR family AUL54_16010 PF10732 Protein of unknown function (DUF2524) AUL54_16015 PF00392 Bacterial regulatory proteins, gntR family AUL54_16020 PF00005 ABC transporter AUL54_16040 PF00005 ABC transporter AUL54_16045 PF02687 FtsX-like permease family AUL54_16045 PF12704 MacB-like periplasmic core domain AUL54_16050 PF00486 Transcriptional regulatory protein, C terminal AUL54_16050 PF00072 Response regulator receiver domain AUL54_16055 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AUL54_16060 PF00005 ABC transporter AUL54_16065 PF02687 FtsX-like permease family AUL54_16070 PF09529 Integral membrane protein (intg_mem_TP0381) AUL54_16075 PF07690 Major Facilitator Superfamily AUL54_16080 PF13426 PAS domain AUL54_16080 PF01740 STAS domain AUL54_16085 PF14074 Protein of unknown function (DUF4257) AUL54_16090 PF00133 tRNA synthetases class I (I, L, M and V) AUL54_16090 PF08264 Anticodon-binding domain of tRNA AUL54_16090 PF09334 tRNA synthetases class I (M) AUL54_16090 PF13603 Leucyl-tRNA synthetase, Domain 2 AUL54_16095 PF00581 Rhodanese-like domain AUL54_16110 PF10957 Sporulation protein Cse60 AUL54_16115 PF02028 BCCT, betaine/carnitine/choline family transporter AUL54_16125 PF01943 Polysaccharide biosynthesis protein AUL54_16125 PF14667 Polysaccharide biosynthesis C-terminal domain AUL54_16130 PF00849 RNA pseudouridylate synthase AUL54_16130 PF01479 S4 domain AUL54_16135 PF08220 DeoR-like helix-turn-helix domain AUL54_16140 PF00005 ABC transporter AUL54_16145 PF05975 Bacterial ABC transporter protein EcsB AUL54_16150 PF00860 Permease family AUL54_16155 PF01546 Peptidase family M20/M25/M40 AUL54_16160 PF00291 Pyridoxal-phosphate dependent enzyme AUL54_16175 PF00781 Diacylglycerol kinase catalytic domain AUL54_16180 PF01636 Phosphotransferase enzyme family AUL54_16185 PF14165 YtzH-like protein AUL54_16190 PF02390 Putative methyltransferase AUL54_16195 PF00753 Metallo-beta-lactamase superfamily AUL54_16200 PF00390 Malic enzyme, N-terminal domain AUL54_16200 PF03949 Malic enzyme, NAD binding domain AUL54_16205 PF03413 Peptidase propeptide and YPEB domain AUL54_16210 PF05343 M42 glutamyl aminopeptidase AUL54_16220 PF13396 Phospholipase_D-nuclease N-terminal AUL54_16220 PF13091 PLD-like domain AUL54_16230 PF04239 Protein of unknown function (DUF421) AUL54_16240 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AUL54_16245 PF07451 Stage V sporulation protein AD (SpoVAD) AUL54_16250 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AUL54_16280 PF05036 Sporulation related domain AUL54_16280 PF01520 N-acetylmuramoyl-L-alanine amidase AUL54_16290 PF00239 Resolvase, N terminal domain AUL54_16290 PF02796 Helix-turn-helix domain of resolvase AUL54_16295 PF13700 Domain of unknown function (DUF4158) AUL54_16295 PF01526 Tn3 transposase DDE domain AUL54_16320 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ AUL54_16325 PF00085 Thioredoxin AUL54_16330 PF07285 Protein of unknown function (DUF1444) AUL54_16335 PF14794 Domain of unknown function (DUF4479) AUL54_16335 PF01588 Putative tRNA binding domain AUL54_16340 PF17854 FtsK alpha domain AUL54_16340 PF01580 FtsK/SpoIIIE family AUL54_16340 PF09397 Ftsk gamma domain AUL54_16345 PF01225 Mur ligase family, catalytic domain AUL54_16345 PF02875 Mur ligase family, glutamate ligase domain AUL54_16345 PF08245 Mur ligase middle domain AUL54_16350 PF06103 Bacterial protein of unknown function (DUF948) AUL54_16355 PF12732 YtxH-like protein AUL54_16360 PF11009 Protein of unknown function (DUF2847) AUL54_16365 PF00793 DAHP synthetase I family AUL54_16365 PF01817 Chorismate mutase type II AUL54_16370 PF00356 Bacterial regulatory proteins, lacI family AUL54_16375 PF01618 MotA/TolQ/ExbB proton channel family AUL54_16380 PF13677 Membrane MotB of proton-channel complex MotA/MotB AUL54_16380 PF00691 OmpA family AUL54_16385 PF00850 Histone deacetylase domain AUL54_16390 PF00571 CBS domain AUL54_16395 PF00583 Acetyltransferase (GNAT) family AUL54_16400 PF00501 AMP-binding enzyme AUL54_16400 PF13193 AMP-binding enzyme C-terminal domain AUL54_16405 PF00579 tRNA synthetases class I (W and Y) AUL54_16405 PF01479 S4 domain AUL54_16420 PF11495 Archaeal transcriptional regulator TrmB AUL54_16420 PF01978 Sugar-specific transcriptional regulator TrmB AUL54_16425 PF16916 Dimerisation domain of Zinc Transporter AUL54_16425 PF01545 Cation efflux family AUL54_16440 PF01965 DJ-1/PfpI family AUL54_16450 PF00970 Oxidoreductase FAD-binding domain AUL54_16450 PF00042 Globin AUL54_16450 PF00175 Oxidoreductase NAD-binding domain AUL54_16455 PF16302 Domain of unknown function (DUF4944) AUL54_16475 PF09346 SMI1 / KNR4 family (SUKH-1) AUL54_16480 PF00171 Aldehyde dehydrogenase family AUL54_16485 PF01479 S4 domain AUL54_16485 PF00163 Ribosomal protein S4/S9 N-terminal domain AUL54_16490 PF00990 Diguanylate cyclase, GGDEF domain AUL54_16495 PF13185 GAF domain AUL54_16500 PF00440 Bacterial regulatory proteins, tetR family AUL54_16505 PF02811 PHP domain AUL54_16510 PF06160 Septation ring formation regulator, EzrA AUL54_16515 PF05525 Branched-chain amino acid transport protein AUL54_16520 PF00266 Aminotransferase class-V AUL54_16525 PF02568 Thiamine biosynthesis protein (ThiI) AUL54_16525 PF02926 THUMP domain AUL54_16530 PF00269 Small, acid-soluble spore proteins, alpha/beta type AUL54_16535 PF13193 AMP-binding enzyme C-terminal domain AUL54_16535 PF00501 AMP-binding enzyme AUL54_16540 PF07969 Amidohydrolase family AUL54_16545 PF01513 ATP-NAD kinase AUL54_16550 PF01343 Peptidase family S49 AUL54_16555 PF06271 RDD family AUL54_16560 PF11167 Protein of unknown function (DUF2953) AUL54_16565 PF09579 Sporulation protein YtfJ (Spore_YtfJ) AUL54_16570 PF08534 Redoxin AUL54_16575 PF02384 N-6 DNA Methylase AUL54_16580 PF00871 Acetokinase family AUL54_16585 PF00994 Probable molybdopterin binding domain AUL54_16590 PF00764 Arginosuccinate synthase AUL54_16595 PF00206 Lyase AUL54_16595 PF14698 Argininosuccinate lyase C-terminal AUL54_16610 PF03061 Thioesterase superfamily AUL54_16610 PF00392 Bacterial regulatory proteins, gntR family AUL54_16610 PF07085 DRTGG domain AUL54_16610 PF00571 CBS domain AUL54_16615 PF14007 YtpI-like protein AUL54_16620 PF02272 DHHA1 domain AUL54_16620 PF01368 DHH family AUL54_16635 PF14034 Sporulation protein YtrH AUL54_16640 PF14579 Helix-hairpin-helix motif AUL54_16640 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AUL54_16640 PF07733 Bacterial DNA polymerase III alpha NTPase domain AUL54_16640 PF02811 PHP domain AUL54_16640 PF01336 OB-fold nucleic acid binding domain AUL54_16645 PF03949 Malic enzyme, NAD binding domain AUL54_16645 PF00390 Malic enzyme, N-terminal domain AUL54_16650 PF17848 Acetyl-coA carboxylase zinc finger domain AUL54_16650 PF01039 Carboxyl transferase domain AUL54_16655 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AUL54_16660 PF00365 Phosphofructokinase AUL54_16665 PF02887 Pyruvate kinase, alpha/beta domain AUL54_16665 PF00224 Pyruvate kinase, barrel domain AUL54_16665 PF00391 PEP-utilising enzyme, mobile domain AUL54_16670 PF04186 FxsA cytoplasmic membrane protein AUL54_16675 PF01594 AI-2E family transporter AUL54_16680 PF04284 Protein of unknown function (DUF441) AUL54_16685 PF00285 Citrate synthase, C-terminal domain AUL54_16690 PF00180 Isocitrate/isopropylmalate dehydrogenase AUL54_16695 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AUL54_16695 PF00056 lactate/malate dehydrogenase, NAD binding domain AUL54_16700 PF00486 Transcriptional regulatory protein, C terminal AUL54_16700 PF00072 Response regulator receiver domain AUL54_16705 PF00989 PAS fold AUL54_16705 PF16736 Single Cache-like AUL54_16705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AUL54_16705 PF00512 His Kinase A (phospho-acceptor) domain AUL54_16710 PF01367 5'-3' exonuclease, C-terminal SAM fold AUL54_16710 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AUL54_16710 PF00476 DNA polymerase family A AUL54_16715 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AUL54_16715 PF06827 Zinc finger found in FPG and IleRS AUL54_16715 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AUL54_16720 PF02659 Putative manganese efflux pump AUL54_16725 PF01121 Dephospho-CoA kinase AUL54_16730 PF00248 Aldo/keto reductase family AUL54_16735 PF07690 Major Facilitator Superfamily AUL54_16740 PF01638 HxlR-like helix-turn-helix AUL54_16745 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AUL54_16745 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AUL54_16750 PF02675 S-adenosylmethionine decarboxylase AUL54_16755 PF03477 ATP cone domain AUL54_16760 PF07261 Replication initiation and membrane attachment AUL54_16765 PF07319 Primosomal protein DnaI N-terminus AUL54_16765 PF01695 IstB-like ATP binding protein AUL54_16770 PF09335 SNARE associated Golgi protein AUL54_16775 PF08812 YtxC-like family AUL54_16780 PF02824 TGS domain AUL54_16780 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AUL54_16780 PF03129 Anticodon binding domain AUL54_16780 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AUL54_16790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AUL54_16790 PF06580 Histidine kinase AUL54_16790 PF07694 5TMR of 5TMR-LYT AUL54_16795 PF04397 LytTr DNA-binding domain AUL54_16795 PF00072 Response regulator receiver domain AUL54_16800 PF03788 LrgA family AUL54_16805 PF04172 LrgB-like family AUL54_16810 PF00707 Translation initiation factor IF-3, C-terminal domain AUL54_16810 PF05198 Translation initiation factor IF-3, N-terminal domain AUL54_16815 PF01632 Ribosomal protein L35 AUL54_16820 PF00453 Ribosomal protein L20 AUL54_16825 PF06961 Protein of unknown function (DUF1294) AUL54_16835 PF05343 M42 glutamyl aminopeptidase AUL54_16840 PF04616 Glycosyl hydrolases family 43 AUL54_16845 PF02610 L-arabinose isomerase AUL54_16845 PF11762 L-arabinose isomerase C-terminal domain AUL54_16850 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AUL54_16850 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AUL54_16855 PF00596 Class II Aldolase and Adducin N-terminal domain AUL54_16860 PF13344 Haloacid dehalogenase-like hydrolase AUL54_16865 PF13685 Iron-containing alcohol dehydrogenase AUL54_16870 PF01547 Bacterial extracellular solute-binding protein AUL54_16875 PF00528 Binding-protein-dependent transport system inner membrane component AUL54_16880 PF00528 Binding-protein-dependent transport system inner membrane component AUL54_16885 PF06964 Alpha-L-arabinofuranosidase C-terminal domain AUL54_16890 PF13722 5TM C-terminal transporter carbon starvation CstA AUL54_16890 PF02554 Carbon starvation protein CstA AUL54_16895 PF13183 4Fe-4S dicluster domain AUL54_16895 PF02754 Cysteine-rich domain AUL54_16900 PF01565 FAD binding domain AUL54_16900 PF02913 FAD linked oxidases, C-terminal domain AUL54_16905 PF17853 GGDEF-like domain AUL54_16905 PF13556 PucR C-terminal helix-turn-helix domain AUL54_16905 PF05651 Putative sugar diacid recognition AUL54_16910 PF14098 Small, acid-soluble spore protein I AUL54_16915 PF08032 RNA 2'-O ribose methyltransferase substrate binding AUL54_16915 PF00588 SpoU rRNA Methylase family AUL54_16920 PF01409 tRNA synthetases class II core domain (F) AUL54_16920 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AUL54_16925 PF01588 Putative tRNA binding domain AUL54_16925 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AUL54_16925 PF03147 Ferredoxin-fold anticodon binding domain AUL54_16925 PF03484 tRNA synthetase B5 domain AUL54_16925 PF03483 B3/4 domain AUL54_16930 PF01351 Ribonuclease HII AUL54_16930 PF11858 Domain of unknown function (DUF3378) AUL54_16935 PF05164 Cell division protein ZapA AUL54_16940 PF02674 Colicin V production protein AUL54_16945 PF14716 Helix-hairpin-helix domain AUL54_16945 PF02811 PHP domain AUL54_16945 PF14791 DNA polymerase beta thumb AUL54_16950 PF01713 Smr domain AUL54_16950 PF00488 MutS domain V AUL54_16955 PF03994 Domain of Unknown Function (DUF350) AUL54_16965 PF00501 AMP-binding enzyme AUL54_16965 PF13193 AMP-binding enzyme C-terminal domain AUL54_16970 PF08359 YsiA-like protein, C-terminal region AUL54_16970 PF00440 Bacterial regulatory proteins, tetR family AUL54_16975 PF00378 Enoyl-CoA hydratase/isomerase AUL54_16980 PF01012 Electron transfer flavoprotein domain AUL54_16985 PF00766 Electron transfer flavoprotein FAD-binding domain AUL54_16985 PF01012 Electron transfer flavoprotein domain AUL54_16990 PF06964 Alpha-L-arabinofuranosidase C-terminal domain AUL54_16995 PF00085 Thioredoxin AUL54_17000 PF02151 UvrB/uvrC motif AUL54_17000 PF08459 UvrC Helix-hairpin-helix N-terminal AUL54_17000 PF01541 GIY-YIG catalytic domain AUL54_17005 PF13840 ACT domain AUL54_17005 PF00696 Amino acid kinase family AUL54_17005 PF01842 ACT domain AUL54_17010 PF10702 Protein of unknown function (DUF2507) AUL54_17015 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AUL54_17020 PF02910 Fumarate reductase flavoprotein C-term AUL54_17020 PF00890 FAD binding domain AUL54_17025 PF13085 2Fe-2S iron-sulfur cluster binding domain AUL54_17025 PF13183 4Fe-4S dicluster domain AUL54_17030 PF03061 Thioesterase superfamily AUL54_17035 PF00196 Bacterial regulatory proteins, luxR family AUL54_17040 PF01047 MarR family AUL54_17045 PF01177 Asp/Glu/Hydantoin racemase AUL54_17050 PF10646 Sporulation and spore germination AUL54_17055 PF03725 3' exoribonuclease family, domain 2 AUL54_17055 PF01138 3' exoribonuclease family, domain 1 AUL54_17060 PF01725 Ham1 family AUL54_17065 PF12850 Calcineurin-like phosphoesterase superfamily domain AUL54_17085 PF00271 Helicase conserved C-terminal domain AUL54_17085 PF04851 Type III restriction enzyme, res subunit AUL54_17085 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) AUL54_17085 PF08463 EcoEI R protein C-terminal AUL54_17090 PF02384 N-6 DNA Methylase AUL54_17130 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AUL54_17130 PF00205 Thiamine pyrophosphate enzyme, central domain AUL54_17130 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AUL54_17135 PF10369 Small subunit of acetolactate synthase AUL54_17135 PF01842 ACT domain AUL54_17140 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AUL54_17140 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AUL54_17145 PF00682 HMGL-like AUL54_17145 PF08502 LeuA allosteric (dimerisation) domain AUL54_17150 PF00180 Isocitrate/isopropylmalate dehydrogenase AUL54_17155 PF00330 Aconitase family (aconitate hydratase) AUL54_17160 PF00694 Aconitase C-terminal domain AUL54_17170 PF05697 Bacterial trigger factor protein (TF) AUL54_17170 PF05698 Bacterial trigger factor protein (TF) C-terminus AUL54_17170 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AUL54_17175 PF06689 ClpX C4-type zinc finger AUL54_17175 PF10431 C-terminal, D2-small domain, of ClpB protein AUL54_17175 PF07724 AAA domain (Cdc48 subfamily) AUL54_17180 PF05362 Lon protease (S16) C-terminal proteolytic domain AUL54_17180 PF00004 ATPase family associated with various cellular activities (AAA) AUL54_17185 PF05362 Lon protease (S16) C-terminal proteolytic domain AUL54_17185 PF00004 ATPase family associated with various cellular activities (AAA) AUL54_17185 PF02190 ATP-dependent protease La (LON) substrate-binding domain AUL54_17190 PF01926 50S ribosome-binding GTPase AUL54_17200 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AUL54_17200 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AUL54_17200 PF01488 Shikimate / quinate 5-dehydrogenase AUL54_17205 PF01578 Cytochrome C assembly protein AUL54_17210 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AUL54_17210 PF03900 Porphobilinogen deaminase, C-terminal domain AUL54_17215 PF02602 Uroporphyrinogen-III synthase HemD AUL54_17220 PF00490 Delta-aminolevulinic acid dehydratase AUL54_17225 PF00202 Aminotransferase class-III AUL54_17230 PF01476 LysM domain AUL54_17245 PF00133 tRNA synthetases class I (I, L, M and V) AUL54_17245 PF10458 Valyl tRNA synthetase tRNA binding arm AUL54_17245 PF08264 Anticodon-binding domain of tRNA AUL54_17250 PF02875 Mur ligase family, glutamate ligase domain AUL54_17250 PF08245 Mur ligase middle domain AUL54_17255 PF06750 Bacterial Peptidase A24 N-terminal domain AUL54_17255 PF01478 Type IV leader peptidase family AUL54_17260 PF05036 Sporulation related domain AUL54_17265 PF02545 Maf-like protein AUL54_17270 PF04002 RadC-like JAB domain AUL54_17280 PF04085 rod shape-determining protein MreC AUL54_17285 PF04093 rod shape-determining protein MreD AUL54_17290 PF03775 Septum formation inhibitor MinC, C-terminal domain AUL54_17295 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AUL54_17300 PF01551 Peptidase family M23 AUL54_17305 PF02163 Peptidase family M50 AUL54_17310 PF00829 Ribosomal prokaryotic L21 protein AUL54_17315 PF04327 Cysteine protease Prp AUL54_17320 PF01016 Ribosomal L27 protein AUL54_17325 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain AUL54_17325 PF14682 Sporulation initiation phospho-transferase B, C-terminal AUL54_17330 PF01018 GTP1/OBG AUL54_17330 PF01926 50S ribosome-binding GTPase AUL54_17330 PF09269 Domain of unknown function (DUF1967) AUL54_17335 PF01842 ACT domain AUL54_17340 PF00800 Prephenate dehydratase AUL54_17340 PF01842 ACT domain AUL54_17345 PF08279 HTH domain AUL54_17345 PF02829 3H domain AUL54_17350 PF00266 Aminotransferase class-V AUL54_17355 PF02910 Fumarate reductase flavoprotein C-term AUL54_17355 PF00890 FAD binding domain AUL54_17360 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AUL54_17360 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AUL54_17365 PF02445 Quinolinate synthetase A protein AUL54_17370 PF01476 LysM domain AUL54_17375 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) AUL54_17380 PF08955 BofC C-terminal domain AUL54_17380 PF08977 Bypass of Forespore C, N terminal AUL54_17385 PF01330 RuvA N terminal domain AUL54_17385 PF07499 RuvA, C-terminal domain AUL54_17390 PF05491 RuvB C-terminal winged helix domain AUL54_17390 PF05496 Holliday junction DNA helicase RuvB P-loop domain AUL54_17390 PF17864 RuvB AAA lid domain AUL54_17395 PF11146 Protein of unknown function (DUF2905) AUL54_17400 PF02547 Queuosine biosynthesis protein AUL54_17405 PF01702 Queuine tRNA-ribosyltransferase AUL54_17410 PF02699 Preprotein translocase subunit AUL54_17415 PF12670 Protein of unknown function (DUF3792) AUL54_17420 PF04239 Protein of unknown function (DUF421) AUL54_17430 PF13797 Post-transcriptional regulator AUL54_17435 PF07549 SecD/SecF GG Motif AUL54_17435 PF02355 Protein export membrane protein AUL54_17440 PF02080 TrkA-C domain AUL54_17445 PF06305 Lipopolysaccharide assembly protein A domain AUL54_17450 PF01368 DHH family AUL54_17450 PF10141 Single-strand DNA-specific exonuclease, C terminal domain AUL54_17450 PF17768 RecJ OB domain AUL54_17450 PF02272 DHHA1 domain AUL54_17455 PF00156 Phosphoribosyl transferase domain AUL54_17460 PF13291 ACT domain AUL54_17460 PF02824 TGS domain AUL54_17460 PF04607 Region found in RelA / SpoT proteins AUL54_17465 PF02580 D-Tyr-tRNA(Tyr) deacylase AUL54_17470 PF01520 N-acetylmuramoyl-L-alanine amidase AUL54_17470 PF08239 Bacterial SH3 domain AUL54_17475 PF13393 Histidyl-tRNA synthetase AUL54_17475 PF03129 Anticodon binding domain AUL54_17480 PF02938 GAD domain AUL54_17480 PF00152 tRNA synthetases class II (D, K and N) AUL54_17480 PF01336 OB-fold nucleic acid binding domain AUL54_17490 PF00899 ThiF family AUL54_17495 PF05496 Holliday junction DNA helicase RuvB P-loop domain AUL54_17495 PF12002 MgsA AAA+ ATPase C terminal AUL54_17495 PF16193 AAA C-terminal domain AUL54_17500 PF02082 Transcriptional regulator AUL54_17505 PF00266 Aminotransferase class-V AUL54_17515 PF13181 Tetratricopeptide repeat AUL54_17515 PF07719 Tetratricopeptide repeat AUL54_17520 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain AUL54_17520 PF14490 Helix-hairpin-helix containing domain AUL54_17520 PF13538 UvrD-like helicase C-terminal domain AUL54_17525 PF05239 PRC-barrel domain AUL54_17535 PF00528 Binding-protein-dependent transport system inner membrane component AUL54_17540 PF00528 Binding-protein-dependent transport system inner membrane component AUL54_17545 PF00497 Bacterial extracellular solute-binding proteins, family 3 AUL54_17550 PF00005 ABC transporter AUL54_17555 PF01594 AI-2E family transporter AUL54_17560 PF02272 DHHA1 domain AUL54_17560 PF01411 tRNA synthetases class II (A) AUL54_17560 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AUL54_17565 PF06135 IreB regulatory phosphoprotein AUL54_17570 PF03652 Holliday junction resolvase AUL54_17575 PF06949 Protein of unknown function (DUF1292) AUL54_17580 PF02618 YceG-like family AUL54_17600 PF00485 Phosphoribulokinase / Uridine kinase family AUL54_17605 PF03449 Transcription elongation factor, N-terminal AUL54_17605 PF01272 Transcription elongation factor, GreA/GreB, C-term AUL54_17610 PF00905 Penicillin binding protein transpeptidase domain AUL54_17610 PF03717 Penicillin-binding Protein dimerisation domain AUL54_17615 PF07423 Domain of unknown function (DUF1510) AUL54_17620 PF10750 Protein of unknown function (DUF2536) AUL54_17625 PF13649 Methyltransferase domain AUL54_17630 PF01048 Phosphorylase superfamily AUL54_17635 PF00291 Pyridoxal-phosphate dependent enzyme AUL54_17640 PF01053 Cys/Met metabolism PLP-dependent enzyme AUL54_17645 PF14143 YrhC-like protein AUL54_17650 PF07849 Protein of unknown function (DUF1641) AUL54_17655 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AUL54_17655 PF00037 4Fe-4S binding domain AUL54_17655 PF01568 Molydopterin dinucleotide binding domain AUL54_17655 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AUL54_17655 PF00384 Molybdopterin oxidoreductase AUL54_17660 PF10057 Uncharacterized conserved protein (DUF2294) AUL54_17665 PF01226 Formate/nitrite transporter AUL54_17670 PF08241 Methyltransferase domain AUL54_17675 PF00440 Bacterial regulatory proteins, tetR family AUL54_17675 PF16295 Tetracyclin repressor-like, C-terminal domain AUL54_17680 PF00175 Oxidoreductase NAD-binding domain AUL54_17680 PF00258 Flavodoxin AUL54_17680 PF00667 FAD binding domain AUL54_17680 PF00067 Cytochrome P450 AUL54_17685 PF07690 Major Facilitator Superfamily AUL54_17690 PF04073 Aminoacyl-tRNA editing domain AUL54_17695 PF12706 Beta-lactamase superfamily domain AUL54_17700 PF01418 Helix-turn-helix domain, rpiR family AUL54_17700 PF01380 SIS domain AUL54_17720 PF05163 DinB family AUL54_17730 PF07690 Major Facilitator Superfamily AUL54_17745 PF12833 Helix-turn-helix domain AUL54_17745 PF06445 GyrI-like small molecule binding domain AUL54_17790 PF10668 Phage terminase small subunit AUL54_17800 PF00248 Aldo/keto reductase family AUL54_17810 PF06800 Sugar transport protein AUL54_17815 PF02525 Flavodoxin-like fold AUL54_17820 PF01638 HxlR-like helix-turn-helix AUL54_17825 PF04542 Sigma-70 region 2 AUL54_17825 PF04545 Sigma-70, region 4 AUL54_17840 PF09335 SNARE associated Golgi protein AUL54_17845 PF01510 N-acetylmuramoyl-L-alanine amidase AUL54_17845 PF01471 Putative peptidoglycan binding domain AUL54_17850 PF01471 Putative peptidoglycan binding domain AUL54_17850 PF01510 N-acetylmuramoyl-L-alanine amidase AUL54_17850 PF01476 LysM domain AUL54_17855 PF01522 Polysaccharide deacetylase AUL54_17860 PF00657 GDSL-like Lipase/Acylhydrolase AUL54_17865 PF08970 Sporulation inhibitor A AUL54_17875 PF01926 50S ribosome-binding GTPase AUL54_17880 PF01488 Shikimate / quinate 5-dehydrogenase AUL54_17880 PF08501 Shikimate dehydrogenase substrate binding domain AUL54_17880 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AUL54_17885 PF01985 CRS1 / YhbY (CRM) domain AUL54_17890 PF01467 Cytidylyltransferase-like AUL54_17895 PF01966 HD domain AUL54_17905 PF13649 Methyltransferase domain AUL54_17910 PF14748 Pyrroline-5-carboxylate reductase dimerisation AUL54_17910 PF03807 NADP oxidoreductase coenzyme F420-dependent AUL54_17915 PF10531 SLBB domain AUL54_17920 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AUL54_17925 PF00753 Metallo-beta-lactamase superfamily AUL54_17925 PF13567 Domain of unknown function (DUF4131) AUL54_17925 PF03772 Competence protein AUL54_17930 PF06144 DNA polymerase III, delta subunit AUL54_17935 PF01649 Ribosomal protein S20 AUL54_17940 PF03418 Germination protease AUL54_17945 PF07454 Stage II sporulation protein P (SpoIIP) AUL54_17950 PF12438 Protein of unknown function (DUF3679) AUL54_17955 PF06421 GTP-binding protein LepA C-terminus AUL54_17955 PF00679 Elongation factor G C-terminus AUL54_17955 PF00009 Elongation factor Tu GTP binding domain AUL54_17955 PF03144 Elongation factor Tu domain 2 AUL54_17960 PF06969 HemN C-terminal domain AUL54_17960 PF04055 Radical SAM superfamily AUL54_17965 PF01628 HrcA protein C terminal domain AUL54_17970 PF01025 GrpE AUL54_17975 PF00012 Hsp70 protein AUL54_17980 PF00226 DnaJ domain AUL54_17980 PF00684 DnaJ central domain AUL54_17980 PF01556 DnaJ C terminal domain AUL54_17990 PF04452 RNA methyltransferase AUL54_17995 PF04055 Radical SAM superfamily AUL54_17995 PF01938 TRAM domain AUL54_17995 PF00919 Uncharacterized protein family UPF0004 AUL54_18000 PF02690 Na+/Pi-cotransporter AUL54_18005 PF01165 Ribosomal protein S21 AUL54_18010 PF09424 Yqey-like protein AUL54_18015 PF01957 NfeD-like C-terminal, partner-binding AUL54_18015 PF01972 Serine dehydrogenase proteinase AUL54_18020 PF12127 SigmaW regulon antibacterial AUL54_18030 PF07873 YabP family AUL54_18035 PF06898 Putative stage IV sporulation protein YqfD AUL54_18040 PF02562 PhoH-like protein AUL54_18045 PF07698 7TM receptor with intracellular HD hydrolase AUL54_18045 PF07697 7TM-HD extracellular AUL54_18045 PF01966 HD domain AUL54_18050 PF02130 Uncharacterized protein family UPF0054 AUL54_18055 PF01219 Prokaryotic diacylglycerol kinase AUL54_18060 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AUL54_18065 PF07650 KH domain AUL54_18065 PF01926 50S ribosome-binding GTPase AUL54_18070 PF11967 Recombination protein O N terminal AUL54_18070 PF02565 Recombination protein O C terminal AUL54_18075 PF02091 Glycyl-tRNA synthetase alpha subunit AUL54_18080 PF02092 Glycyl-tRNA synthetase beta subunit AUL54_18085 PF08279 HTH domain AUL54_18085 PF00571 CBS domain AUL54_18090 PF03618 Kinase/pyrophosphorylase AUL54_18095 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 AUL54_18100 PF08275 DNA primase catalytic core, N-terminal domain AUL54_18100 PF10410 DnaB-helicase binding domain of primase AUL54_18100 PF01807 CHC2 zinc finger AUL54_18105 PF04545 Sigma-70, region 4 AUL54_18105 PF04539 Sigma-70 region 3 AUL54_18105 PF04542 Sigma-70 region 2 AUL54_18105 PF00140 Sigma-70 factor, region 1.2 AUL54_18105 PF03979 Sigma-70 factor, region 1.1 AUL54_18110 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AUL54_18115 PF04816 tRNA (adenine(22)-N(1))-methyltransferase AUL54_18120 PF01784 NIF3 (NGG1p interacting factor 3) AUL54_18125 PF02401 LytB protein AUL54_18130 PF14181 YqfQ-like protein AUL54_18135 PF00271 Helicase conserved C-terminal domain AUL54_18135 PF00270 DEAD/DEAH box helicase AUL54_18140 PF01261 Xylose isomerase-like TIM barrel AUL54_18145 PF11116 Protein of unknown function (DUF2624) AUL54_18150 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AUL54_18150 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AUL54_18155 PF01475 Ferric uptake regulator family AUL54_18170 PF04551 GcpE protein AUL54_18180 PF06691 Protein of unknown function (DUF1189) AUL54_18185 PF04306 Protein of unknown function (DUF456) AUL54_18190 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AUL54_18190 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AUL54_18195 PF07690 Major Facilitator Superfamily AUL54_18205 PF12849 PBP superfamily domain AUL54_18210 PF00528 Binding-protein-dependent transport system inner membrane component AUL54_18215 PF00528 Binding-protein-dependent transport system inner membrane component AUL54_18220 PF00005 ABC transporter AUL54_18225 PF00005 ABC transporter AUL54_18240 PF01812 5-formyltetrahydrofolate cyclo-ligase family AUL54_18245 PF03553 Na+/H+ antiporter family AUL54_18250 PF06014 Bacterial protein of unknown function (DUF910) AUL54_18255 PF00480 ROK family AUL54_18260 PF00246 Zinc carboxypeptidase AUL54_18270 PF01910 Thiamine-binding protein AUL54_18275 PF00753 Metallo-beta-lactamase superfamily AUL54_18280 PF11117 Protein of unknown function (DUF2626) AUL54_18285 PF03960 ArsC family AUL54_18295 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain AUL54_18295 PF01740 STAS domain AUL54_18300 PF01595 Cyclin M transmembrane N-terminal domain AUL54_18300 PF03471 Transporter associated domain AUL54_18300 PF00571 CBS domain AUL54_18305 PF01544 CorA-like Mg2+ transporter protein AUL54_18310 PF00437 Type II/IV secretion system protein AUL54_18315 PF00482 Type II secretion system (T2SS), protein F AUL54_18320 PF07963 Prokaryotic N-terminal methylation motif AUL54_18325 PF07963 Prokaryotic N-terminal methylation motif AUL54_18335 PF15980 Putative Competence protein ComGF AUL54_18340 PF14173 ComG operon protein 7 AUL54_18345 PF14038 YqzE-like protein AUL54_18350 PF13028 Protein of unknown function (DUF3889) AUL54_18365 PF12389 Camelysin metallo-endopeptidase AUL54_18370 PF01381 Helix-turn-helix AUL54_18370 PF08671 Anti-repressor SinI AUL54_18375 PF08671 Anti-repressor SinI AUL54_18380 PF11079 Bacterial protein YqhG of unknown function AUL54_18385 PF00271 Helicase conserved C-terminal domain AUL54_18385 PF00176 SNF2 family N-terminal domain AUL54_18390 PF08669 Glycine cleavage T-protein C-terminal barrel domain AUL54_18390 PF01571 Aminomethyltransferase folate-binding domain AUL54_18395 PF02347 Glycine cleavage system P-protein AUL54_18400 PF02347 Glycine cleavage system P-protein AUL54_18405 PF00581 Rhodanese-like domain AUL54_18410 PF03099 Biotin/lipoate A/B protein ligase family AUL54_18415 PF02742 Iron dependent repressor, metal binding and dimerisation domain AUL54_18415 PF01325 Iron dependent repressor, N-terminal DNA binding domain AUL54_18420 PF01734 Patatin-like phospholipase AUL54_18430 PF07136 Protein of unknown function (DUF1385) AUL54_18435 PF11085 Conserved membrane protein YqhR AUL54_18440 PF00557 Metallopeptidase family M24 AUL54_18440 PF01321 Creatinase/Prolidase N-terminal domain AUL54_18445 PF09285 Elongation factor P, C-terminal AUL54_18445 PF08207 Elongation factor P (EF-P) KOW-like domain AUL54_18445 PF01132 Elongation factor P (EF-P) OB domain AUL54_18450 PF10942 Protein of unknown function (DUF2619) AUL54_18460 PF09548 Stage III sporulation protein AB (spore_III_AB) AUL54_18465 PF06686 Stage III sporulation protein AC/AD protein family AUL54_18470 PF06686 Stage III sporulation protein AC/AD protein family AUL54_18480 PF09581 Stage III sporulation protein AF (Spore_III_AF) AUL54_18490 PF12685 SpoIIIAH-like protein AUL54_18495 PF00364 Biotin-requiring enzyme AUL54_18500 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AUL54_18500 PF00289 Biotin carboxylase, N-terminal domain AUL54_18500 PF02785 Biotin carboxylase C-terminal domain AUL54_18505 PF03780 Asp23 family, cell envelope-related function AUL54_18510 PF01029 NusB family AUL54_18515 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AUL54_18515 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AUL54_18520 PF13742 OB-fold nucleic acid binding domain AUL54_18520 PF02601 Exonuclease VII, large subunit AUL54_18525 PF02609 Exonuclease VII small subunit AUL54_18530 PF00348 Polyprenyl synthetase AUL54_18535 PF02780 Transketolase, C-terminal domain AUL54_18535 PF02779 Transketolase, pyrimidine binding domain AUL54_18535 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AUL54_18540 PF01728 FtsJ-like methyltransferase AUL54_18540 PF01479 S4 domain AUL54_18545 PF01316 Arginine repressor, DNA binding domain AUL54_18545 PF02863 Arginine repressor, C-terminal domain AUL54_18550 PF13476 AAA domain AUL54_18555 PF05580 SpoIVB peptidase S55 AUL54_18555 PF17820 PDZ domain AUL54_18560 PF08769 Sporulation initiation factor Spo0A C terminal AUL54_18560 PF00072 Response regulator receiver domain AUL54_18565 PF00842 Alanine racemase, C-terminal domain AUL54_18565 PF01168 Alanine racemase, N-terminal domain AUL54_18570 PF10676 Spore germination protein gerPA/gerPF AUL54_18575 PF10676 Spore germination protein gerPA/gerPF AUL54_18580 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AUL54_18605 PF01520 N-acetylmuramoyl-L-alanine amidase AUL54_18610 PF03009 Glycerophosphoryl diester phosphodiesterase family AUL54_18615 PF00108 Thiolase, N-terminal domain AUL54_18615 PF02803 Thiolase, C-terminal domain AUL54_18620 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AUL54_18620 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AUL54_18625 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AUL54_18625 PF02770 Acyl-CoA dehydrogenase, middle domain AUL54_18625 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AUL54_18630 PF00285 Citrate synthase, C-terminal domain AUL54_18635 PF03972 MmgE/PrpD family AUL54_18645 PF11118 Protein of unknown function (DUF2627) AUL54_18650 PF02954 Bacterial regulatory protein, Fis family AUL54_18650 PF00989 PAS fold AUL54_18650 PF00158 Sigma-54 interaction domain AUL54_18655 PF01515 Phosphate acetyl/butaryl transferase AUL54_18660 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AUL54_18660 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AUL54_18665 PF00871 Acetokinase family AUL54_18670 PF07992 Pyridine nucleotide-disulphide oxidoreductase AUL54_18670 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AUL54_18675 PF00676 Dehydrogenase E1 component AUL54_18680 PF02779 Transketolase, pyrimidine binding domain AUL54_18680 PF02780 Transketolase, C-terminal domain AUL54_18685 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AUL54_18685 PF02817 e3 binding domain AUL54_18685 PF00364 Biotin-requiring enzyme AUL54_18690 PF00781 Diacylglycerol kinase catalytic domain AUL54_18695 PF06491 Disulphide isomerase AUL54_18700 PF00497 Bacterial extracellular solute-binding proteins, family 3 AUL54_18705 PF00528 Binding-protein-dependent transport system inner membrane component AUL54_18710 PF00005 ABC transporter AUL54_18715 PF11728 Putative aromatic acid exporter C-terminal domain AUL54_18715 PF06081 Aromatic acid exporter family member 1 AUL54_18720 PF03734 L,D-transpeptidase catalytic domain AUL54_18730 PF01039 Carboxyl transferase domain AUL54_18735 PF01546 Peptidase family M20/M25/M40 AUL54_18735 PF07687 Peptidase dimerisation domain AUL54_18740 PF02096 60Kd inner membrane protein AUL54_18750 PF00817 impB/mucB/samB family AUL54_18750 PF11798 IMS family HHH motif AUL54_18750 PF11799 impB/mucB/samB family C-terminal domain AUL54_18755 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AUL54_18755 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain AUL54_18760 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain AUL54_18760 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain AUL54_18765 PF12706 Beta-lactamase superfamily domain AUL54_18770 PF12146 Serine aminopeptidase, S33 AUL54_18775 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AUL54_18780 PF00467 KOW motif AUL54_18780 PF02357 Transcription termination factor nusG AUL54_18785 PF03060 Nitronate monooxygenase AUL54_18785 PF00698 Acyl transferase domain AUL54_18800 PF13193 AMP-binding enzyme C-terminal domain AUL54_18800 PF00501 AMP-binding enzyme AUL54_18810 PF00109 Beta-ketoacyl synthase, N-terminal domain AUL54_18810 PF08242 Methyltransferase domain AUL54_18810 PF08659 KR domain AUL54_18810 PF02801 Beta-ketoacyl synthase, C-terminal domain AUL54_18810 PF00550 Phosphopantetheine attachment site AUL54_18810 PF14765 Polyketide synthase dehydratase AUL54_18810 PF16197 Ketoacyl-synthetase C-terminal extension AUL54_18815 PF00109 Beta-ketoacyl synthase, N-terminal domain AUL54_18815 PF02801 Beta-ketoacyl synthase, C-terminal domain AUL54_18815 PF13193 AMP-binding enzyme C-terminal domain AUL54_18815 PF00668 Condensation domain AUL54_18815 PF16197 Ketoacyl-synthetase C-terminal extension AUL54_18815 PF08659 KR domain AUL54_18815 PF00550 Phosphopantetheine attachment site AUL54_18815 PF14765 Polyketide synthase dehydratase AUL54_18815 PF00501 AMP-binding enzyme AUL54_18820 PF00109 Beta-ketoacyl synthase, N-terminal domain AUL54_18820 PF16197 Ketoacyl-synthetase C-terminal extension AUL54_18820 PF00550 Phosphopantetheine attachment site AUL54_18820 PF02801 Beta-ketoacyl synthase, C-terminal domain AUL54_18820 PF14765 Polyketide synthase dehydratase AUL54_18820 PF08242 Methyltransferase domain AUL54_18820 PF08659 KR domain AUL54_18825 PF00109 Beta-ketoacyl synthase, N-terminal domain AUL54_18825 PF16197 Ketoacyl-synthetase C-terminal extension AUL54_18825 PF13193 AMP-binding enzyme C-terminal domain AUL54_18825 PF00501 AMP-binding enzyme AUL54_18825 PF14765 Polyketide synthase dehydratase AUL54_18825 PF02801 Beta-ketoacyl synthase, C-terminal domain AUL54_18825 PF08659 KR domain AUL54_18825 PF00668 Condensation domain AUL54_18825 PF00550 Phosphopantetheine attachment site AUL54_18830 PF00109 Beta-ketoacyl synthase, N-terminal domain AUL54_18830 PF14765 Polyketide synthase dehydratase AUL54_18830 PF02801 Beta-ketoacyl synthase, C-terminal domain AUL54_18830 PF00550 Phosphopantetheine attachment site AUL54_18830 PF08659 KR domain AUL54_18830 PF16197 Ketoacyl-synthetase C-terminal extension AUL54_18830 PF00668 Condensation domain AUL54_18830 PF13193 AMP-binding enzyme C-terminal domain AUL54_18830 PF00501 AMP-binding enzyme AUL54_18835 PF08659 KR domain AUL54_18835 PF02801 Beta-ketoacyl synthase, C-terminal domain AUL54_18835 PF00109 Beta-ketoacyl synthase, N-terminal domain AUL54_18835 PF16197 Ketoacyl-synthetase C-terminal extension AUL54_18835 PF00550 Phosphopantetheine attachment site AUL54_18835 PF14765 Polyketide synthase dehydratase AUL54_18835 PF08242 Methyltransferase domain AUL54_18840 PF14765 Polyketide synthase dehydratase AUL54_18840 PF08659 KR domain AUL54_18840 PF02801 Beta-ketoacyl synthase, C-terminal domain AUL54_18840 PF00109 Beta-ketoacyl synthase, N-terminal domain AUL54_18840 PF08242 Methyltransferase domain AUL54_18840 PF00550 Phosphopantetheine attachment site AUL54_18840 PF16197 Ketoacyl-synthetase C-terminal extension AUL54_18845 PF00067 Cytochrome P450 AUL54_18850 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal AUL54_18850 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal AUL54_18855 PF00378 Enoyl-CoA hydratase/isomerase AUL54_18860 PF14748 Pyrroline-5-carboxylate reductase dimerisation AUL54_18860 PF03807 NADP oxidoreductase coenzyme F420-dependent AUL54_18865 PF00753 Metallo-beta-lactamase superfamily AUL54_18870 PF00106 short chain dehydrogenase AUL54_18875 PF00291 Pyridoxal-phosphate dependent enzyme AUL54_18880 PF00485 Phosphoribulokinase / Uridine kinase family AUL54_18895 PF01594 AI-2E family transporter AUL54_18900 PF14164 YqzH-like protein AUL54_18905 PF08863 YolD-like protein AUL54_18910 PF00817 impB/mucB/samB family AUL54_18910 PF11799 impB/mucB/samB family C-terminal domain AUL54_18915 PF00583 Acetyltransferase (GNAT) family AUL54_18920 PF03992 Antibiotic biosynthesis monooxygenase AUL54_18925 PF04229 GrpB protein AUL54_18925 PF13673 Acetyltransferase (GNAT) domain AUL54_18930 PF01521 Iron-sulphur cluster biosynthesis AUL54_18935 PF10827 Protein of unknown function (DUF2552) AUL54_18940 PF12146 Serine aminopeptidase, S33 AUL54_18950 PF00248 Aldo/keto reductase family AUL54_18955 PF13072 Mother cell inhibitor of FtsZ AUL54_18960 PF00293 NUDIX domain AUL54_18970 PF01381 Helix-turn-helix AUL54_18975 PF17763 Glutaminase/Asparaginase C-terminal domain AUL54_18975 PF00710 Asparaginase, N-terminal AUL54_18980 PF00206 Lyase AUL54_18980 PF10415 Fumarase C C-terminus AUL54_18985 PF03553 Na+/H+ antiporter family AUL54_18990 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AUL54_18990 PF00390 Malic enzyme, N-terminal domain AUL54_18990 PF03949 Malic enzyme, NAD binding domain AUL54_19005 PF01944 Stage II sporulation protein M AUL54_19010 PF01475 Ferric uptake regulator family AUL54_19015 PF14004 Protein of unknown function (DUF4227) AUL54_19020 PF02899 Phage integrase, N-terminal SAM-like domain AUL54_19020 PF00589 Phage integrase family AUL54_19025 PF01676 Metalloenzyme superfamily AUL54_19030 PF01048 Phosphorylase superfamily AUL54_19035 PF07943 Penicillin-binding protein 5, C-terminal domain AUL54_19035 PF00768 D-alanyl-D-alanine carboxypeptidase AUL54_19040 PF01740 STAS domain AUL54_19045 PF13581 Histidine kinase-like ATPase domain AUL54_19050 PF04539 Sigma-70 region 3 AUL54_19050 PF04542 Sigma-70 region 2 AUL54_19050 PF04545 Sigma-70, region 4 AUL54_19055 PF12164 Stage V sporulation protein AA AUL54_19060 PF13782 Stage V sporulation protein AB AUL54_19065 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AUL54_19070 PF07451 Stage V sporulation protein AD (SpoVAD) AUL54_19075 PF03862 SpoVAC/SpoVAEB sporulation membrane protein AUL54_19080 PF14097 Stage V sporulation protein AE1 AUL54_19085 PF03323 Bacillus/Clostridium GerA spore germination protein AUL54_19090 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AUL54_19090 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AUL54_19095 PF06207 Protein of unknown function (DUF1002) AUL54_19100 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AUL54_19110 PF10502 Signal peptidase, peptidase S26 AUL54_19120 PF01872 RibD C-terminal domain AUL54_19120 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AUL54_19125 PF00677 Lumazine binding domain AUL54_19130 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AUL54_19130 PF00925 GTP cyclohydrolase II AUL54_19135 PF00885 6,7-dimethyl-8-ribityllumazine synthase AUL54_19140 PF00583 Acetyltransferase (GNAT) family AUL54_19145 PF03745 Domain of unknown function (DUF309) AUL54_19150 PF02616 Segregation and condensation protein ScpA AUL54_19155 PF04079 Segregation and condensation complex subunit ScpB AUL54_19160 PF13047 Protein of unknown function (DUF3907) AUL54_19165 PF00768 D-alanyl-D-alanine carboxypeptidase AUL54_19165 PF07943 Penicillin-binding protein 5, C-terminal domain AUL54_19170 PF07670 Nucleoside recognition AUL54_19175 PF07670 Nucleoside recognition AUL54_19180 PF00849 RNA pseudouridylate synthase AUL54_19180 PF01479 S4 domain AUL54_19185 PF00578 AhpC/TSA family AUL54_19190 PF05140 ResB-like family AUL54_19195 PF01578 Cytochrome C assembly protein AUL54_19200 PF00486 Transcriptional regulatory protein, C terminal AUL54_19200 PF00072 Response regulator receiver domain AUL54_19205 PF00512 His Kinase A (phospho-acceptor) domain AUL54_19205 PF00989 PAS fold AUL54_19205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AUL54_19205 PF00672 HAMP domain AUL54_19205 PF18698 Histidine kinase sensor domain AUL54_19210 PF04542 Sigma-70 region 2 AUL54_19210 PF08281 Sigma-70, region 4 AUL54_19220 PF01842 ACT domain AUL54_19220 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AUL54_19220 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AUL54_19225 PF12822 ECF transporter, substrate-specific component AUL54_19235 PF14493 Helix-turn-helix domain AUL54_19240 PF00270 DEAD/DEAH box helicase AUL54_19240 PF00271 Helicase conserved C-terminal domain AUL54_19245 PF02517 CPBP intramembrane metalloprotease AUL54_19250 PF01476 LysM domain AUL54_19255 PF10864 Protein of unknown function (DUF2663) AUL54_19260 PF00149 Calcineurin-like phosphoesterase AUL54_19265 PF05389 Negative regulator of genetic competence (MecA) AUL54_19270 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AUL54_19270 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AUL54_19280 PF13367 PrsW family intramembrane metalloprotease AUL54_19285 PF07486 Cell Wall Hydrolase AUL54_19285 PF01471 Putative peptidoglycan binding domain AUL54_19290 PF14620 YpeB sporulation AUL54_19290 PF03413 Peptidase propeptide and YPEB domain AUL54_19295 PF07238 PilZ domain AUL54_19295 PF12945 Flagellar protein YcgR AUL54_19300 PF02224 Cytidylate kinase AUL54_19305 PF00575 S1 RNA binding domain AUL54_19310 PF01070 FMN-dependent dehydrogenase AUL54_19320 PF01926 50S ribosome-binding GTPase AUL54_19320 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AUL54_19325 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AUL54_19325 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AUL54_19330 PF10966 Protein of unknown function (DUF2768) AUL54_19340 PF09547 Stage IV sporulation protein A (spore_IV_A) AUL54_19345 PF00216 Bacterial DNA-binding protein AUL54_19350 PF01227 GTP cyclohydrolase I AUL54_19355 PF02081 Tryptophan RNA-binding attenuator protein AUL54_19360 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 AUL54_19365 PF01209 ubiE/COQ5 methyltransferase family AUL54_19370 PF00348 Polyprenyl synthetase AUL54_19375 PF00334 Nucleoside diphosphate kinase AUL54_19380 PF01739 CheR methyltransferase, SAM binding domain AUL54_19380 PF03705 CheR methyltransferase, all-alpha domain AUL54_19385 PF01264 Chorismate synthase AUL54_19390 PF01761 3-dehydroquinate synthase AUL54_19395 PF07736 Chorismate mutase type I AUL54_19400 PF04715 Anthranilate synthase component I, N terminal region AUL54_19400 PF00425 chorismate binding enzyme AUL54_19405 PF00591 Glycosyl transferase family, a/b domain AUL54_19405 PF02885 Glycosyl transferase family, helical bundle domain AUL54_19410 PF00218 Indole-3-glycerol phosphate synthase AUL54_19415 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AUL54_19420 PF00291 Pyridoxal-phosphate dependent enzyme AUL54_19425 PF00290 Tryptophan synthase alpha chain AUL54_19430 PF00155 Aminotransferase class I and II AUL54_19435 PF02153 Prephenate dehydrogenase AUL54_19435 PF01842 ACT domain AUL54_19440 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AUL54_19450 PF08858 IDEAL domain AUL54_19450 PF08864 UPF0302 domain AUL54_19455 PF10673 Protein of unknown function (DUF2487) AUL54_19460 PF00355 Rieske [2Fe-2S] domain AUL54_19465 PF00033 Cytochrome b/b6/petB AUL54_19470 PF00032 Cytochrome b(C-terminal)/b6/petD AUL54_19470 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AUL54_19475 PF07187 Protein of unknown function (DUF1405) AUL54_19480 PF09577 Sporulation protein YpjB (SpoYpjB) AUL54_19485 PF00190 Cupin AUL54_19490 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) AUL54_19490 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 AUL54_19495 PF03819 MazG nucleotide pyrophosphohydrolase domain AUL54_19500 PF01113 Dihydrodipicolinate reductase, N-terminus AUL54_19500 PF05173 Dihydrodipicolinate reductase, C-terminus AUL54_19505 PF02142 MGS-like domain AUL54_19510 PF02585 GlcNAc-PI de-N-acetylase AUL54_19515 PF13439 Glycosyltransferase Family 4 AUL54_19515 PF00534 Glycosyl transferases group 1 AUL54_19520 PF13735 tRNA nucleotidyltransferase domain 2 putative AUL54_19520 PF01743 Poly A polymerase head domain AUL54_19520 PF12627 Probable RNA and SrmB- binding site of polymerase A AUL54_19525 PF08279 HTH domain AUL54_19525 PF02237 Biotin protein ligase C terminal domain AUL54_19525 PF03099 Biotin/lipoate A/B protein ligase family AUL54_19530 PF02548 Ketopantoate hydroxymethyltransferase AUL54_19535 PF02569 Pantoate-beta-alanine ligase AUL54_19540 PF02261 Aspartate decarboxylase AUL54_19545 PF13307 Helicase C-terminal domain AUL54_19545 PF00929 Exonuclease AUL54_19545 PF04851 Type III restriction enzyme, res subunit AUL54_19550 PF03413 Peptidase propeptide and YPEB domain AUL54_19550 PF17881 Domain of unknown function (DUF5590) AUL54_19555 PF00155 Aminotransferase class I and II AUL54_19560 PF01336 OB-fold nucleic acid binding domain AUL54_19560 PF00152 tRNA synthetases class II (D, K and N) AUL54_19565 PF07261 Replication initiation and membrane attachment AUL54_19570 PF00633 Helix-hairpin-helix motif AUL54_19570 PF00730 HhH-GPD superfamily base excision DNA repair protein AUL54_19570 PF10576 Iron-sulfur binding domain of endonuclease III AUL54_19580 PF00905 Penicillin binding protein transpeptidase domain AUL54_19580 PF00912 Transglycosylase AUL54_19585 PF03838 Recombination protein U AUL54_19590 PF10720 Protein of unknown function (DUF2515) AUL54_19605 PF08807 Bacterial domain of unknown function (DUF1798) AUL54_19610 PF14178 YppF-like protein AUL54_19615 PF14179 YppG-like protein AUL54_19625 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 AUL54_19630 PF00271 Helicase conserved C-terminal domain AUL54_19630 PF09369 Domain of unknown function (DUF1998) AUL54_19630 PF00270 DEAD/DEAH box helicase AUL54_19635 PF13482 RNase_H superfamily AUL54_19640 PF06908 YspA SLOG family AUL54_19645 PF05103 DivIVA protein AUL54_19655 PF02926 THUMP domain AUL54_19655 PF01170 Putative RNA methylase family UPF0020 AUL54_19665 PF13307 Helicase C-terminal domain AUL54_19670 PF02074 Carboxypeptidase Taq (M32) metallopeptidase AUL54_19675 PF00156 Phosphoribosyl transferase domain AUL54_19680 PF00860 Permease family AUL54_19690 PF00565 Staphylococcal nuclease homologue AUL54_19690 PF05901 Excalibur calcium-binding domain AUL54_19705 PF04740 LXG domain of WXG superfamily AUL54_19705 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH AUL54_19715 PF09346 SMI1 / KNR4 family (SUKH-1) AUL54_19730 PF09560 Sporulation protein YunB (Spo_YunB) AUL54_19735 PF08863 YolD-like protein AUL54_19740 PF11798 IMS family HHH motif AUL54_19740 PF00817 impB/mucB/samB family AUL54_19740 PF11799 impB/mucB/samB family C-terminal domain AUL54_19745 PF18801 response regulator aspartate phosphatase H, N terminal AUL54_19770 PF01510 N-acetylmuramoyl-L-alanine amidase AUL54_19770 PF01471 Putative peptidoglycan binding domain AUL54_19775 PF12708 Pectate lyase superfamily protein AUL54_19775 PF11962 Peptidase_G2, IMC autoproteolytic cleavage domain AUL54_19790 PF05709 Phage tail protein AUL54_19795 PF01551 Peptidase family M23 AUL54_19795 PF10145 Phage-related minor tail protein AUL54_19795 PF01464 Transglycosylase SLT domain AUL54_19910 PF03237 Terminase-like family AUL54_19950 PF00216 Bacterial DNA-binding protein AUL54_19980 PF16302 Domain of unknown function (DUF4944) AUL54_20055 PF13443 Cro/C1-type HTH DNA-binding domain AUL54_20155 PF14072 DNA-sulfur modification-associated AUL54_20165 PF13443 Cro/C1-type HTH DNA-binding domain AUL54_20215 PF06908 YspA SLOG family AUL54_20220 PF01844 HNH endonuclease AUL54_20230 PF14037 YoqO-like protein AUL54_20235 PF01068 ATP dependent DNA ligase domain AUL54_20240 PF02586 SOS response associated peptidase (SRAP) AUL54_20260 PF05908 Poly-gamma-glutamate hydrolase AUL54_20265 PF13229 Right handed beta helix region AUL54_20300 PF03796 DnaB-like helicase C terminal domain AUL54_20310 PF17768 RecJ OB domain AUL54_20310 PF01368 DHH family