locus-tag	class	description
AUL54_00005	COG0587	DNA-directed DNA polymerase activity
AUL54_00010	COG3584	3D domain protein
AUL54_00015	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
AUL54_00105	COG1780	Probably involved in ribonucleotide reductase function
AUL54_00110	COG1372	Participates in initiation and elongation during chromosome replication
AUL54_00110	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AUL54_00130	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AUL54_00135	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AUL54_00145	COG0756	dUTP diphosphatase activity
AUL54_00165	COG0207	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor and reductant in the reaction, yielding dihydrofolate (DHF) as a by-product. This enzymatic reaction provides an intracellular de novo source of dTMP, an essential precursor for DNA biosynthesis
AUL54_00205	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
AUL54_00250	COG3331	DNA recombination
AUL54_00265	COG1335	isochorismatase
AUL54_00290	COG3424	synthase
AUL54_00295	COG1755	Isoprenylcysteine carboxyl methyltransferase
AUL54_00300	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
AUL54_00310	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AUL54_00320	COG0328	RNA-DNA hybrid ribonuclease activity
AUL54_00325	COG1738	Involved in the import of queuosine (Q) precursors, required for Q precursor salvage
AUL54_00330	COG0328	RNA-DNA hybrid ribonuclease activity
AUL54_00350	COG1278	Cold shock
AUL54_00355	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
AUL54_00365	COG0386	Belongs to the glutathione peroxidase family
AUL54_00375	COG1413	lyase activity
AUL54_00390	COG2136	Putative SAM-dependent methyltransferase
AUL54_00390	COG2521	methyltransferase
AUL54_00405	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
AUL54_00410	COG0204	Acyl-transferase
AUL54_00415	COG1272	protein, Hemolysin III
AUL54_00420	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
AUL54_00425	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
AUL54_00435	COG1999	signal sequence binding
AUL54_00440	COG2755	lipolytic protein G-D-S-L family
AUL54_00445	COG4698	Protein conserved in bacteria
AUL54_00450	COG1846	Transcriptional regulator
AUL54_00470	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
AUL54_00495	COG4282	regulation of fungal-type cell wall biogenesis
AUL54_00500	COG5444	nuclease activity
AUL54_00525	COG3391	amine dehydrogenase activity
AUL54_00535	COG0457	Tetratricopeptide repeat
AUL54_00570	COG0477	Major facilitator Superfamily
AUL54_00575	COG1086	Polysaccharide biosynthesis protein
AUL54_00585	COG4641	Protein conserved in bacteria
AUL54_00600	COG0463	Glycosyl transferase, family 2
AUL54_00605	COG0456	acetyltransferase
AUL54_00615	COG3449	Inhibits the supercoiling activity of DNA gyrase. Acts by inhibiting DNA gyrase at an early step, prior to (or at the step of) binding of DNA by the gyrase. It protects cells against toxins that target DNA gyrase, by inhibiting activity of these toxins and reducing the formation of lethal double-strand breaks in the cell
AUL54_00620	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
AUL54_00625	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
AUL54_00630	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
AUL54_00635	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AUL54_00640	COG0456	acetyltransferase
AUL54_00645	COG1509	lysine 2,3-aminomutase activity
AUL54_00665	COG0671	phosphoesterase, PA-phosphatase related
AUL54_00680	COG1876	peptidase activity
AUL54_00690	COG2226	methyltransferase
AUL54_00695	COG0793	Belongs to the peptidase S41A family
AUL54_00695	COG3409	Peptidoglycan-binding domain 1 protein
AUL54_00700	COG2188	Transcriptional regulator
AUL54_00705	COG2723	6-phospho-beta-galactosidase activity
AUL54_00715	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AUL54_00725	COG0346	lactoylglutathione lyase activity
AUL54_00730	COG0400	carboxylic ester hydrolase activity
AUL54_00735	COG0778	Nitroreductase
AUL54_00740	COG1733	regulation of RNA biosynthetic process
AUL54_00765	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
AUL54_00770	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
AUL54_00775	COG1366	Belongs to the anti-sigma-factor antagonist family
AUL54_00780	COG0534	Mate efflux family protein
AUL54_00785	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
AUL54_00790	COG1819	glycosyl
AUL54_00795	COG0791	NLP P60 protein
AUL54_00795	COG1388	LysM domain
AUL54_00800	COG2032	superoxide dismutase activity
AUL54_00805	COG0714	Associated with various cellular activities
AUL54_00810	COG4548	von Willebrand factor, type A
AUL54_00820	COG0508	dehydrogenase complex catalyzes the overall conversion of
AUL54_00825	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AUL54_00830	COG0385	Bile acid
AUL54_00835	COG0733	neurotransmitter:sodium symporter activity
AUL54_00840	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
AUL54_00845	COG1657	PFAM Prenyltransferase squalene oxidase
AUL54_00850	COG1012	belongs to the aldehyde dehydrogenase family
AUL54_00875	COG0071	Belongs to the small heat shock protein (HSP20) family
AUL54_00890	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
AUL54_00895	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
AUL54_00905	COG0514	ATP-dependent DNA helicase (RecQ)
AUL54_00910	COG3584	3D domain protein
AUL54_00910	COG1388	LysM domain
AUL54_00920	COG1619	proteins homologs of microcin C7 resistance protein MccF
AUL54_00935	COG2322	membrane
AUL54_00940	COG0741	lytic transglycosylase activity
AUL54_00945	COG0640	Transcriptional regulator
AUL54_00955	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AUL54_00960	COG1309	transcriptional regulator
AUL54_00965	COG2207	Transcriptional regulator
AUL54_00965	COG0662	Cupin 2, conserved barrel domain protein
AUL54_00970	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AUL54_01095	COG3953	SLT domain
AUL54_01095	COG5412	phage tail tape measure protein
AUL54_01110	COG5434	Belongs to the glycosyl hydrolase 28 family
AUL54_01130	COG4824	toxin secretion phage lysis holin
AUL54_01135	COG5632	N-Acetylmuramoyl-L-alanine amidase
AUL54_01185	COG4974	Belongs to the 'phage' integrase family
AUL54_01190	COG5444	nuclease activity
AUL54_01220	COG0243	molybdopterin cofactor binding
AUL54_01225	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AUL54_01235	COG2814	Major facilitator Superfamily
AUL54_01245	COG4768	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
AUL54_01250	COG0300	oxidoreductase activity
AUL54_01265	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
AUL54_01270	COG0583	DNA-binding transcription factor activity
AUL54_01275	COG0070	glutamate synthase
AUL54_01275	COG0067	glutamate synthase
AUL54_01275	COG0069	glutamate synthase activity
AUL54_01280	COG0493	'glutamate synthase
AUL54_01290	COG0604	alcohol dehydrogenase
AUL54_01300	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
AUL54_01305	COG0640	Transcriptional regulator
AUL54_01310	COG2814	Major facilitator Superfamily
AUL54_01315	COG0405	Gamma-glutamyltransferase
AUL54_01320	COG0166	Belongs to the GPI family
AUL54_01325	COG0582	viral genome integration into host DNA
AUL54_01340	COG0534	Mate efflux family protein
AUL54_01345	COG2017	converts alpha-aldose to the beta-anomer
AUL54_01350	COG2027	D-alanyl-D-alanine carboxypeptidase
AUL54_01355	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AUL54_01360	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AUL54_01365	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AUL54_01370	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AUL54_01375	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AUL54_01375	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
AUL54_01385	COG1649	PFAM Uncharacterised BCR, COG1649
AUL54_01390	COG1960	acyl-CoA dehydrogenase activity
AUL54_01395	COG0318	PFAM AMP-dependent synthetase and ligase
AUL54_01400	COG0439	Biotin carboxylase
AUL54_01405	COG0511	ligase activity, forming carbon-carbon bonds
AUL54_01410	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
AUL54_01415	COG1024	Enoyl-CoA hydratase
AUL54_01420	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
AUL54_01425	COG0586	Pfam SNARE associated Golgi protein
AUL54_01430	COG1210	Utp--glucose-1-phosphate uridylyltransferase
AUL54_01435	COG2246	polysaccharide biosynthetic process
AUL54_01445	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
AUL54_01460	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
AUL54_01465	COG2124	cytochrome p450
AUL54_01470	COG2610	gluconate transmembrane transporter activity
AUL54_01475	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
AUL54_01480	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
AUL54_01485	COG1028	Short-chain dehydrogenase reductase Sdr
AUL54_01510	COG3507	Belongs to the glycosyl hydrolase 43 family
AUL54_01550	COG1115	amino acid carrier protein
AUL54_01560	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
AUL54_01565	COG0187	DNA topoisomerase II activity
AUL54_01570	COG1832	CoA-binding protein
AUL54_01580	COG4841	protein insertion into membrane
AUL54_01590	COG0824	Thioesterase
AUL54_01605	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AUL54_01610	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
AUL54_01625	COG0071	Belongs to the small heat shock protein (HSP20) family
AUL54_01635	COG4846	Membrane protein involved in cytochrome C biogenesis
AUL54_01640	COG2201	protein-glutamate methylesterase activity
AUL54_01645	COG0785	Cytochrome C biogenesis protein
AUL54_01665	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
AUL54_01675	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
AUL54_01710	COG4195	phage-related replication protein
AUL54_01715	COG0756	dUTP diphosphatase activity
AUL54_01720	COG5434	Belongs to the glycosyl hydrolase 28 family
AUL54_01730	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AUL54_01735	COG3397	chitin binding
AUL54_01755	COG0456	acetyltransferase
AUL54_01775	COG4451	ribulose bisphosphate carboxylase, small
AUL54_01775	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
AUL54_01780	COG1064	alcohol dehydrogenase
AUL54_01785	COG2318	DinB family
AUL54_01790	COG2378	regulation of single-species biofilm formation
AUL54_01805	COG0574	Belongs to the PEP-utilizing enzyme family
AUL54_01805	COG3848	Pyruvate phosphate dikinase
AUL54_01810	COG1070	Carbohydrate kinase
AUL54_01825	COG3507	Belongs to the glycosyl hydrolase 43 family
AUL54_01830	COG2211	Major facilitator Superfamily
AUL54_01845	COG5444	nuclease activity
AUL54_01860	COG0174	glutamine synthetase
AUL54_01865	COG0789	Transcriptional regulator
AUL54_01870	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
AUL54_01875	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
AUL54_01880	COG0464	growth
AUL54_01890	COG0860	N-Acetylmuramoyl-L-alanine amidase
AUL54_01895	COG4112	unkown
AUL54_01900	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AUL54_01905	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
AUL54_01945	COG2076	Multidrug Resistance protein
AUL54_01955	COG1764	response to oxidative stress
AUL54_01960	COG4195	phage-related replication protein
AUL54_01970	COG1404	Belongs to the peptidase S8 family
AUL54_01980	COG3619	membrane
AUL54_01985	COG3209	COG3209 Rhs family protein
AUL54_01990	COG2124	cytochrome p450
AUL54_01995	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
AUL54_01995	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AUL54_01995	COG3319	amino acid activation for nonribosomal peptide biosynthetic process
AUL54_01995	COG3321	synthase
AUL54_02000	COG3321	synthase
AUL54_02000	COG4221	oxidoreductase activity
AUL54_02000	COG1028	Short-chain dehydrogenase reductase Sdr
AUL54_02000	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AUL54_02005	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AUL54_02005	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AUL54_02005	COG1028	Short-chain dehydrogenase reductase Sdr
AUL54_02005	COG1028	Short-chain dehydrogenase reductase Sdr
AUL54_02005	COG3321	synthase
AUL54_02005	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AUL54_02005	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AUL54_02005	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AUL54_02005	COG3321	synthase
AUL54_02005	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AUL54_02010	COG3321	synthase
AUL54_02010	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AUL54_02010	COG4221	oxidoreductase activity
AUL54_02010	COG0300	oxidoreductase activity
AUL54_02015	COG1028	Short-chain dehydrogenase reductase Sdr
AUL54_02015	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AUL54_02015	COG0318	PFAM AMP-dependent synthetase and ligase
AUL54_02015	COG0300	oxidoreductase activity
AUL54_02015	COG3321	synthase
AUL54_02020	COG1024	Enoyl-CoA hydratase
AUL54_02025	COG1024	Enoyl-CoA hydratase
AUL54_02030	COG3425	synthase
AUL54_02035	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AUL54_02065	COG5444	nuclease activity
AUL54_02110	COG4550	Control of competence regulator ComK, YlbF/YmcA
AUL54_02130	COG2359	stage V sporulation protein S
AUL54_02135	COG1692	metallophosphoesterase
AUL54_02145	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
AUL54_02160	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
AUL54_02165	COG1426	Protein conserved in bacteria
AUL54_02180	COG0300	oxidoreductase activity
AUL54_02185	COG0612	Peptidase, M16
AUL54_02190	COG0612	Peptidase, M16
AUL54_02195	COG2409	Drug exporters of the RND superfamily
AUL54_02195	COG1033	growth of symbiont in host cell
AUL54_02200	COG1846	Transcriptional regulator
AUL54_02205	COG2814	Major facilitator Superfamily
AUL54_02210	COG2188	Transcriptional regulator
AUL54_02215	COG4980	gas vesicle protein
AUL54_02215	COG1674	ftsk spoiiie
AUL54_02225	COG0740	serine-type endopeptidase activity
AUL54_02230	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
AUL54_02240	COG0527	aspartate kinase activity
AUL54_02245	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
AUL54_02250	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
AUL54_02255	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AUL54_02260	COG1873	PFAM PRC-barrel domain
AUL54_02265	COG0612	Peptidase, M16
AUL54_02270	COG0726	polysaccharide deacetylase
AUL54_02285	COG0196	riboflavin kinase activity
AUL54_02300	COG1550	Protein conserved in bacteria
AUL54_02310	COG1358	cellular component organization or biogenesis
AUL54_02315	COG2740	Nucleic-acid-binding protein implicated in transcription termination
AUL54_02320	COG0195	Participates in both transcription termination and antitermination
AUL54_02330	COG2176	DNA-directed DNA polymerase activity
AUL54_02340	COG0750	zinc metalloprotease
AUL54_02350	COG4589	Belongs to the CDS family
AUL54_02355	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
AUL54_02375	COG0052	Belongs to the universal ribosomal protein uS2 family
AUL54_02385	COG1191	sigma factor activity
AUL54_02395	COG1776	CheC inhibitor of MCP methylation
AUL54_02400	COG0835	chemotaxis
AUL54_02405	COG0643	Histidine kinase
AUL54_02405	COG2198	Histidine kinase
AUL54_02410	COG2201	protein-glutamate methylesterase activity
AUL54_02415	COG0455	bacterial-type flagellum organization
AUL54_02420	COG1419	protein localization to endoplasmic reticulum
AUL54_02425	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
AUL54_02430	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
AUL54_02435	COG1684	flagellar biosynthetic protein fliR
AUL54_02440	COG1987	bacterial-type flagellum assembly
AUL54_02445	COG1338	Plays a role in the flagellum-specific transport system
AUL54_02450	COG3190	flagellar
AUL54_02455	COG2201	protein-glutamate methylesterase activity
AUL54_02460	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
AUL54_02460	COG1776	CheC inhibitor of MCP methylation
AUL54_02465	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
AUL54_02470	COG1580	Controls the rotational direction of flagella during chemotaxis
AUL54_02475	COG1582	Flagellar protein (FlbD)
AUL54_02480	COG4786	Flagellar basal body rod
AUL54_02485	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
AUL54_02490	COG3144	bacterial-type flagellum assembly
AUL54_02495	COG3334	PFAM MgtE intracellular
AUL54_02500	COG2882	bacterial-type flagellum organization
AUL54_02505	COG1157	protein secretion by the type III secretion system
AUL54_02510	COG1317	bacterial-type flagellum organization
AUL54_02515	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
AUL54_02520	COG1766	The M ring may be actively involved in energy transduction
AUL54_02525	COG1677	Flagellar hook-basal body complex protein FliE
AUL54_02530	COG1558	bacterial-type flagellum-dependent cell motility
AUL54_02535	COG1815	bacterial-type flagellum-dependent cell motility
AUL54_02555	COG4974	Belongs to the 'phage' integrase family
AUL54_02565	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
AUL54_02570	COG0758	DNA mediated transformation
AUL54_02575	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
AUL54_02585	COG2257	FlhB HrpN YscU SpaS Family
AUL54_02600	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
AUL54_02625	COG1837	Belongs to the UPF0109 family
AUL54_02635	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
AUL54_02650	COG0552	protein localization to endoplasmic reticulum
AUL54_02655	COG1196	nuclear chromosome segregation
AUL54_02665	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AUL54_02670	COG1028	Short-chain dehydrogenase reductase Sdr
AUL54_02675	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
AUL54_02690	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
AUL54_02695	COG1760	l-serine dehydratase
AUL54_02700	COG1760	l-serine dehydratase
AUL54_02705	COG1461	Dihydroxyacetone kinase
AUL54_02710	COG1302	Protein conserved in bacteria
AUL54_02725	COG1564	THIamine pyrophosphokinase
AUL54_02730	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
AUL54_02740	COG2815	serine threonine protein kinase
AUL54_02740	COG0515	serine threonine protein kinase
AUL54_02745	COG0631	protein serine/threonine phosphatase activity
AUL54_02755	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
AUL54_02755	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
AUL54_02765	COG0242	peptide deformylase activity
AUL54_02770	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
AUL54_02775	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
AUL54_02785	COG0194	GDP metabolic process
AUL54_02790	COG2052	Domain of unknown function (DUF370)
AUL54_02795	COG1561	YicC-like family, N-terminal region
AUL54_02800	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
AUL54_02815	COG1648	precorrin-2 dehydrogenase activity
AUL54_02820	COG2138	Cobalamin (vitamin B12) biosynthesis CbiX protein
AUL54_02825	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
AUL54_02840	COG0306	phosphate transporter
AUL54_02850	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
AUL54_02855	COG0284	orotidine-5'-phosphate decarboxylase activity
AUL54_02870	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
AUL54_02875	COG0505	Belongs to the CarA family
AUL54_02880	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
AUL54_02890	COG2233	PERMEase
AUL54_02900	COG0564	pseudouridine synthase activity
AUL54_02910	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
AUL54_02915	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
AUL54_02920	COG3599	regulation of cell shape
AUL54_02925	COG2302	S4 RNA-binding domain
AUL54_02930	COG0762	integral membrane protein
AUL54_02940	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
AUL54_02950	COG1873	PFAM PRC-barrel domain
AUL54_02955	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AUL54_02960	COG1119	ATPase activity
AUL54_02965	COG1191	sigma factor activity
AUL54_02970	COG1191	sigma factor activity
AUL54_02980	COG1404	Belongs to the peptidase S8 family
AUL54_02980	COG4412	M6 family metalloprotease domain protein
AUL54_02985	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
AUL54_02990	COG0849	cell division
AUL54_02995	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
AUL54_03010	COG0772	Belongs to the SEDS family
AUL54_03030	COG0768	penicillin binding
AUL54_03040	COG4839	cell division protein FtsL
AUL54_03060	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
AUL54_03075	COG1399	metal-binding, possibly nucleic acid-binding protein
AUL54_03085	COG3480	Lon protease (S16) C-terminal proteolytic domain
AUL54_03090	COG1752	Esterase of the alpha-beta hydrolase superfamily
AUL54_03095	COG3314	Sporulation integral membrane protein YlbJ
AUL54_03105	COG0742	ribosomal rna small subunit methyltransferase
AUL54_03115	COG3679	Belongs to the UPF0342 family
AUL54_03130	COG2340	Cysteine-rich secretory protein family
AUL54_03135	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
AUL54_03145	COG3336	cytochrome c oxidase
AUL54_03150	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
AUL54_03155	COG1845	cytochrome c oxidase, subunit III
AUL54_03160	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AUL54_03165	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
AUL54_03165	COG2010	Cytochrome c
AUL54_03180	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
AUL54_03185	COG0772	Belongs to the SEDS family
AUL54_03195	COG2066	Belongs to the glutaminase family
AUL54_03200	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
AUL54_03205	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
AUL54_03215	COG4896	Protein conserved in bacteria
AUL54_03255	COG1595	DNA-templated transcription, initiation
AUL54_03270	COG3227	Zinc metalloprotease (Elastase)
AUL54_03280	COG0483	inositol monophosphate 1-phosphatase activity
AUL54_03300	COG1982	Orn Lys Arg decarboxylase major
AUL54_03310	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AUL54_03315	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AUL54_03320	COG0508	dehydrogenase complex catalyzes the overall conversion of
AUL54_03325	COG0022	dehydrogenase e1 component
AUL54_03330	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
AUL54_03335	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
AUL54_03340	COG3321	synthase
AUL54_03340	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AUL54_03340	COG1028	Short-chain dehydrogenase reductase Sdr
AUL54_03340	COG4221	oxidoreductase activity
AUL54_03345	COG0300	oxidoreductase activity
AUL54_03345	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AUL54_03345	COG4221	oxidoreductase activity
AUL54_03345	COG3321	synthase
AUL54_03350	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AUL54_03350	COG0300	oxidoreductase activity
AUL54_03350	COG3321	synthase
AUL54_03350	COG4221	oxidoreductase activity
AUL54_03355	COG3321	synthase
AUL54_03355	COG0300	oxidoreductase activity
AUL54_03355	COG4221	oxidoreductase activity
AUL54_03355	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AUL54_03360	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AUL54_03360	COG3321	synthase
AUL54_03360	COG1028	Short-chain dehydrogenase reductase Sdr
AUL54_03360	COG4221	oxidoreductase activity
AUL54_03365	COG3321	synthase
AUL54_03365	COG0300	oxidoreductase activity
AUL54_03365	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AUL54_03365	COG4221	oxidoreductase activity
AUL54_03370	COG1028	Short-chain dehydrogenase reductase Sdr
AUL54_03370	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AUL54_03370	COG3321	synthase
AUL54_03370	COG4221	oxidoreductase activity
AUL54_03375	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
AUL54_03375	COG2070	2-Nitropropane dioxygenase
AUL54_03380	COG0497	DNA recombination
AUL54_03390	COG0242	peptide deformylase activity
AUL54_03395	COG0561	phosphatase activity
AUL54_03405	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
AUL54_03415	COG0569	domain protein
AUL54_03420	COG2105	PFAM AIG2 family protein
AUL54_03420	COG3703	Catalyzes the cleavage of glutathione into 5-oxo-L- proline and a Cys-Gly dipeptide. Acts specifically on glutathione, but not on other gamma-glutamyl peptides
AUL54_03425	COG3852	Histidine kinase
AUL54_03430	COG2002	toxin-antitoxin pair type II binding
AUL54_03440	COG1077	Cell shape determining protein MreB Mrl
AUL54_03445	COG2309	aminopeptidase activity
AUL54_03450	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
AUL54_03455	COG0488	(ABC) transporter
AUL54_03465	COG0681	Belongs to the peptidase S26 family
AUL54_03470	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AUL54_03470	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
AUL54_03470	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
AUL54_03475	COG1105	Belongs to the carbohydrate kinase PfkB family
AUL54_03480	COG1349	DNA-binding transcription factor activity
AUL54_03485	COG0577	efflux transmembrane transporter activity
AUL54_03490	COG1136	(ABC) transporter
AUL54_03495	COG0845	Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family
AUL54_03505	COG1977	Involved in sulfur transfer in the conversion of molybdopterin precursor Z to molybdopterin
AUL54_03510	COG0314	molybdopterin synthase activity
AUL54_03515	COG1763	Mo-molybdopterin cofactor biosynthetic process
AUL54_03520	COG0303	'Molybdopterin
AUL54_03525	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
AUL54_03545	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AUL54_03550	COG0668	transmembrane transport
AUL54_03570	COG0716	FMN binding
AUL54_03580	COG0716	FMN binding
AUL54_03585	COG0583	DNA-binding transcription factor activity
AUL54_03590	COG0517	IMP dehydrogenase activity
AUL54_03600	COG1978	Selenoprotein B, glycine betaine sarcosine D-proline reductase family
AUL54_03605	COG4703	Protein of unknown function (DUF1797)
AUL54_03615	COG2200	EAL domain
AUL54_03625	COG1028	Short-chain dehydrogenase reductase Sdr
AUL54_03630	COG1408	metallophosphoesterase
AUL54_03635	COG1376	ErfK ybiS ycfS ynhG family protein
AUL54_03640	COG2814	Major facilitator Superfamily
AUL54_03650	COG0784	Response regulator, receiver
AUL54_03650	COG0835	chemotaxis
AUL54_03655	COG0436	Aminotransferase
AUL54_03660	COG4191	Histidine kinase
AUL54_03665	COG0768	penicillin binding
AUL54_03670	COG2340	Cysteine-rich secretory protein family
AUL54_03680	COG2084	Dehydrogenase
AUL54_03685	COG0840	transmembrane signaling receptor activity
AUL54_03690	COG1533	DNA photolyase activity
AUL54_03700	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
AUL54_03705	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
AUL54_03710	COG1263	PTS System
AUL54_03710	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AUL54_03710	COG2190	(PTS) system
AUL54_03715	COG3711	transcriptional antiterminator
AUL54_03720	COG1609	Transcriptional regulator
AUL54_03725	COG0006	proline dipeptidase activity
AUL54_03730	COG2217	Heavy metal translocating P-type atpase
AUL54_03735	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AUL54_03740	COG2244	polysaccharide biosynthetic process
AUL54_03745	COG3773	Cell wall hydrolase
AUL54_03755	COG4873	Protein conserved in bacteria
AUL54_03770	COG1028	Short-chain dehydrogenase reductase Sdr
AUL54_03775	COG1733	regulation of RNA biosynthetic process
AUL54_03780	COG0780	Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1)
AUL54_03785	COG0602	queuosine metabolic process
AUL54_03790	COG0720	synthase
AUL54_03805	COG3949	Membrane
AUL54_03810	COG0542	response to heat
AUL54_03815	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
AUL54_03820	COG1360	Flagellar Motor Protein
AUL54_03825	COG1846	Transcriptional regulator
AUL54_03830	COG3852	Histidine kinase
AUL54_03860	COG0436	Aminotransferase
AUL54_03865	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
AUL54_03880	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
AUL54_03885	COG5002	protein histidine kinase activity
AUL54_03890	COG3594	Acyltransferase
AUL54_03895	COG2323	membrane
AUL54_03900	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
AUL54_03925	COG1191	sigma factor activity
AUL54_03930	COG0861	Integral membrane protein TerC family
AUL54_03935	COG0586	Pfam SNARE associated Golgi protein
AUL54_03940	COG5001	Diguanylate cyclase
AUL54_03940	COG3300	MHYT domain
AUL54_03945	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
AUL54_03950	COG1793	dna ligase
AUL54_03950	COG3285	dna ligase
AUL54_03955	COG0726	polysaccharide deacetylase
AUL54_03960	COG1846	Transcriptional regulator
AUL54_03970	COG0789	Transcriptional regulator
AUL54_03975	COG2239	Acts as a magnesium transporter
AUL54_03980	COG1388	LysM domain
AUL54_03980	COG3858	chitin binding
AUL54_03985	COG4721	ABC-type cobalt transport system, permease component
AUL54_03990	COG1122	ATPase activity
AUL54_03995	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
AUL54_04000	COG1366	Belongs to the anti-sigma-factor antagonist family
AUL54_04005	COG1404	Belongs to the peptidase S8 family
AUL54_04020	COG2814	Major facilitator Superfamily
AUL54_04025	COG0590	tRNA wobble adenosine to inosine editing
AUL54_04035	COG0463	Glycosyl transferase, family 2
AUL54_04035	COG0457	Tetratricopeptide repeat
AUL54_04050	COG1764	response to oxidative stress
AUL54_04055	COG1846	Transcriptional regulator
AUL54_04060	COG1764	response to oxidative stress
AUL54_04070	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
AUL54_04075	COG0788	formyltetrahydrofolate deformylase activity
AUL54_04080	COG2076	Multidrug Resistance protein
AUL54_04085	COG2076	Multidrug Resistance protein
AUL54_04090	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AUL54_04095	COG1607	acyl-coa hydrolase
AUL54_04100	COG1834	amidinotransferase
AUL54_04105	COG2706	6-phosphogluconolactonase activity
AUL54_04110	COG4608	Belongs to the ABC transporter superfamily
AUL54_04115	COG0791	NLP P60 protein
AUL54_04120	COG4948	Mandelate Racemase Muconate Lactonizing
AUL54_04125	COG1619	proteins homologs of microcin C7 resistance protein MccF
AUL54_04130	COG4166	transmembrane transport
AUL54_04135	COG0444	Belongs to the ABC transporter superfamily
AUL54_04140	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AUL54_04145	COG0601	transmembrane transport
AUL54_04150	COG2362	D-Aminopeptidase
AUL54_04155	COG0477	Major facilitator Superfamily
AUL54_04160	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AUL54_04165	COG0463	Glycosyl transferase, family 2
AUL54_04170	COG1807	4-amino-4-deoxy-L-arabinose transferase and related glycosyltransferases of PMT family
AUL54_04175	COG0346	lactoylglutathione lyase activity
AUL54_04180	COG0531	amino acid
AUL54_04185	COG1392	Phosphate transport regulator
AUL54_04190	COG0306	phosphate transporter
AUL54_04205	COG3409	Peptidoglycan-binding domain 1 protein
AUL54_04205	COG5632	N-Acetylmuramoyl-L-alanine amidase
AUL54_04245	COG3778	Protein conserved in bacteria
AUL54_04250	COG3299	homolog of phage Mu protein gp47
AUL54_04255	COG3628	GPW Gp25 family protein
AUL54_04265	COG4193	domain, Protein
AUL54_04270	COG1652	LysM domain
AUL54_04275	COG3953	SLT domain
AUL54_04275	COG5412	phage tail tape measure protein
AUL54_04275	COG3953	SLT domain
AUL54_04275	COG5412	phage tail tape measure protein
AUL54_04275	COG3953	SLT domain
AUL54_04275	COG5412	phage tail tape measure protein
AUL54_04320	COG4653	Phage capsid family
AUL54_04325	COG0338	D12 class N6 adenine-specific DNA methyltransferase
AUL54_04330	COG5518	Phage portal protein
AUL54_04335	COG1783	phage Terminase large subunit
AUL54_04340	COG3728	DNA packaging
AUL54_04340	COG5484	DNA packaging
AUL54_04345	COG1595	DNA-templated transcription, initiation
AUL54_04360	COG1484	DNA-dependent DNA replication
AUL54_04365	COG1522	sequence-specific DNA binding
AUL54_04375	COG1396	sequence-specific DNA binding
AUL54_04380	COG2856	Zn peptidase
AUL54_04385	COG4195	phage-related replication protein
AUL54_04395	COG5632	N-Acetylmuramoyl-L-alanine amidase
AUL54_04395	COG1388	LysM domain
AUL54_04395	COG3409	Peptidoglycan-binding domain 1 protein
AUL54_04405	COG0457	Tetratricopeptide repeat
AUL54_04410	COG2318	DinB family
AUL54_04415	COG0730	response to heat
AUL54_04425	COG1609	Transcriptional regulator
AUL54_04430	COG1252	NADH dehydrogenase
AUL54_04440	COG4297	protein containing double-stranded beta helix domain
AUL54_04445	COG0697	spore germination
AUL54_04450	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
AUL54_04455	COG0390	transport system, permease component
AUL54_04460	COG1587	Uroporphyrinogen-III synthase
AUL54_04470	COG1819	glycosyl
AUL54_04475	COG2124	cytochrome p450
AUL54_04480	COG2427	Protein of unknown function (DUF1641)
AUL54_04485	COG3383	formate dehydrogenase (NAD+) activity
AUL54_04495	COG2205	protein histidine kinase activity
AUL54_04500	COG1285	pathogenesis
AUL54_04520	COG1349	DNA-binding transcription factor activity
AUL54_04525	COG2723	6-phospho-beta-galactosidase activity
AUL54_04530	COG1447	Phosphotransferase system cellobiose-specific component IIA
AUL54_04535	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
AUL54_04535	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
AUL54_04540	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
AUL54_04545	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
AUL54_04550	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
AUL54_04560	COG1846	Transcriptional regulator
AUL54_04565	COG2814	Major facilitator Superfamily
AUL54_04570	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
AUL54_04575	COG2367	Beta-lactamase
AUL54_04665	COG0626	cystathionine gamma-synthase activity
AUL54_04670	COG0626	cystathionine gamma-synthase activity
AUL54_04675	COG2382	esterase
AUL54_04685	COG2153	protein acetylation
AUL54_04695	COG1131	(ABC) transporter
AUL54_04710	COG0210	DNA helicase
AUL54_04765	COG0623	enoyl-[acyl-carrier-protein] reductase (NADH) activity
AUL54_04770	COG0351	phosphomethylpyrimidine kinase
AUL54_04775	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
AUL54_04785	COG2104	thiamine diphosphate biosynthetic process
AUL54_04790	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AUL54_04795	COG0352	thiamine-phosphate diphosphorylase activity
AUL54_04800	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
AUL54_04805	COG0475	glutathione-regulated potassium exporter activity
AUL54_04805	COG0569	domain protein
AUL54_04815	COG0564	pseudouridine synthase activity
AUL54_04820	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
AUL54_04825	COG2357	RelA SpoT domain protein
AUL54_04835	COG4116	CYTH
AUL54_04840	COG0741	lytic transglycosylase activity
AUL54_04845	COG2346	COG2346, Truncated hemoglobins
AUL54_04855	COG1164	Oligoendopeptidase f
AUL54_04860	COG4469	Competence protein
AUL54_04865	COG4862	establishment of competence for transformation
AUL54_04870	COG0861	Integral membrane protein TerC family
AUL54_04875	COG1393	Belongs to the ArsC family
AUL54_04880	COG0456	acetyltransferase
AUL54_04890	COG4608	Belongs to the ABC transporter superfamily
AUL54_04895	COG0444	Belongs to the ABC transporter superfamily
AUL54_04900	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AUL54_04905	COG0601	transmembrane transport
AUL54_04910	COG4166	transmembrane transport
AUL54_04915	COG0180	Tryptophanyl-tRNA synthetase
AUL54_04925	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AUL54_04930	COG0601	transmembrane transport
AUL54_04940	COG4608	Belongs to the ABC transporter superfamily
AUL54_04945	COG0444	Belongs to the ABC transporter superfamily
AUL54_04950	COG5504	Zn-dependent protease
AUL54_04955	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
AUL54_04960	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AUL54_04975	COG1744	ABC transporter substrate-binding protein PnrA-like
AUL54_05000	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
AUL54_05005	COG0458	carbamoyl-phosphate synthase (glutamine-hydrolyzing) activity
AUL54_05010	COG0505	Belongs to the CarA family
AUL54_05015	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AUL54_05035	COG2271	Major facilitator Superfamily
AUL54_05040	COG0277	FAD linked oxidase domain protein
AUL54_05050	COG2151	metal-sulfur cluster biosynthetic enzyme
AUL54_05055	COG1073	alpha beta
AUL54_05060	COG0561	phosphatase activity
AUL54_05075	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
AUL54_05085	COG2996	Protein conserved in bacteria
AUL54_05095	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
AUL54_05095	COG0646	methionine synthase
AUL54_05105	COG1357	PFAM Pentapeptide repeats (8 copies)
AUL54_05110	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AUL54_05115	COG1279	arginine transmembrane transporter activity
AUL54_05120	COG2318	DinB family
AUL54_05125	COG1917	Cupin 2, conserved barrel domain protein
AUL54_05125	COG2207	Transcriptional regulator
AUL54_05130	COG0534	Mate efflux family protein
AUL54_05135	COG1562	ergosterol biosynthetic process
AUL54_05140	COG0367	asparagine synthase
AUL54_05155	COG0179	Fumarylacetoacetate (FAA) hydrolase
AUL54_05195	COG1403	HNH endonuclease
AUL54_05200	COG0419	ATPase involved in DNA repair
AUL54_05205	COG0420	3'-5' exonuclease activity
AUL54_05220	COG2323	membrane
AUL54_05225	COG1633	Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME)
AUL54_05235	COG2814	Major facilitator Superfamily
AUL54_05240	COG3180	Ammonia monooxygenase
AUL54_05245	COG1846	Transcriptional regulator
AUL54_05250	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AUL54_05255	COG0681	Belongs to the peptidase S26 family
AUL54_05260	COG0398	Pfam SNARE associated Golgi protein
AUL54_05275	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AUL54_05295	COG5646	InterPro IPR014922
AUL54_05300	COG4903	ComK protein
AUL54_05310	COG1028	Short-chain dehydrogenase reductase Sdr
AUL54_05315	COG0723	plastoquinol--plastocyanin reductase activity
AUL54_05315	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AUL54_05320	COG0840	transmembrane signaling receptor activity
AUL54_05325	COG1268	BioY protein
AUL54_05330	COG0318	PFAM AMP-dependent synthetase and ligase
AUL54_05335	COG0183	Belongs to the thiolase family
AUL54_05340	COG0406	alpha-ribazole phosphatase activity
AUL54_05345	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
AUL54_05350	COG1404	Belongs to the peptidase S8 family
AUL54_05355	COG0501	Belongs to the peptidase M48B family
AUL54_05365	COG0318	PFAM AMP-dependent synthetase and ligase
AUL54_05370	COG0702	epimerase
AUL54_05375	COG0095	Lipoate-protein ligase
AUL54_05380	COG1234	tRNA 3'-trailer cleavage
AUL54_05385	COG1301	dicarboxylic acid transport
AUL54_05390	COG1363	Peptidase, m42
AUL54_05400	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AUL54_05405	COG1511	domain protein
AUL54_05410	COG1309	transcriptional regulator
AUL54_05430	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AUL54_05435	COG2329	Antibiotic biosynthesis monooxygenase
AUL54_05440	COG3069	C4-dicarboxylate transmembrane transporter activity
AUL54_05445	COG1473	amidohydrolase
AUL54_05455	COG4473	ABC transporter
AUL54_05460	COG1131	(ABC) transporter
AUL54_05465	COG0537	adenosine 5'-monophosphoramidase activity
AUL54_05470	COG1932	Catalyzes the reversible conversion of 3- phosphohydroxypyruvate to phosphoserine and of 3-hydroxy-2-oxo-4- phosphonooxybutanoate to phosphohydroxythreonine
AUL54_05485	COG4980	gas vesicle protein
AUL54_05515	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AUL54_05530	COG4717	serine-type aminopeptidase activity
AUL54_05535	COG0420	3'-5' exonuclease activity
AUL54_05540	COG1668	transmembrane transport
AUL54_05545	COG4152	abc transporter atp-binding protein
AUL54_05555	COG1024	Enoyl-CoA hydratase
AUL54_05565	COG0490	domain, Protein
AUL54_05570	COG0475	glutathione-regulated potassium exporter activity
AUL54_05580	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AUL54_05585	COG0561	phosphatase activity
AUL54_05590	COG4335	DNA alkylation repair
AUL54_05605	COG0189	ligase activity
AUL54_05610	COG0189	ligase activity
AUL54_05625	COG0702	epimerase
AUL54_05630	COG1132	(ABC) transporter
AUL54_05635	COG1132	(ABC) transporter
AUL54_05640	COG0589	response to stress
AUL54_05650	COG3226	Transcriptional regulator
AUL54_05655	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AUL54_05660	COG0726	polysaccharide deacetylase
AUL54_05665	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
AUL54_05670	COG0668	transmembrane transport
AUL54_05675	COG0584	glycerophosphoryl diester phosphodiesterase
AUL54_05680	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
AUL54_05685	COG0239	Important for reducing fluoride concentration in the cell, thus reducing its toxicity
AUL54_05690	COG1253	flavin adenine dinucleotide binding
AUL54_05700	COG0436	Aminotransferase
AUL54_05705	COG0789	Transcriptional regulator
AUL54_05710	COG1253	flavin adenine dinucleotide binding
AUL54_05715	COG0204	Acyl-transferase
AUL54_05720	COG1595	DNA-templated transcription, initiation
AUL54_05740	COG0733	neurotransmitter:sodium symporter activity
AUL54_05745	COG0531	amino acid
AUL54_05755	COG1028	Short-chain dehydrogenase reductase Sdr
AUL54_05760	COG0372	Belongs to the citrate synthase family
AUL54_05765	COG0583	DNA-binding transcription factor activity
AUL54_05770	COG1388	LysM domain
AUL54_05770	COG0791	NLP P60 protein
AUL54_05775	COG1785	Belongs to the alkaline phosphatase family
AUL54_05780	COG2719	SpoVR family
AUL54_05785	COG0668	transmembrane transport
AUL54_05790	COG1959	2 iron, 2 sulfur cluster binding
AUL54_05795	COG1388	LysM domain
AUL54_05795	COG0791	NLP P60 protein
AUL54_05810	COG0431	NADPH-dependent FMN reductase
AUL54_05820	COG2203	Gaf domain
AUL54_05820	COG4585	Histidine kinase
AUL54_05825	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
AUL54_05830	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
AUL54_05840	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
AUL54_05845	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
AUL54_05850	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
AUL54_05860	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
AUL54_05865	COG0517	IMP dehydrogenase activity
AUL54_05875	COG0564	pseudouridine synthase activity
AUL54_05880	COG3764	Sortase (surface protein transpeptidase)
AUL54_05885	COG0737	Belongs to the 5'-nucleotidase family
AUL54_05885	COG1525	nuclease
AUL54_05885	COG4085	toxin activity
AUL54_05890	COG5577	PFAM Coat F domain
AUL54_05910	COG1823	symporter activity
AUL54_05915	COG3706	GGDEF domain
AUL54_05920	COG1278	Cold shock
AUL54_05925	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
AUL54_05930	COG1131	(ABC) transporter
AUL54_05935	COG1131	(ABC) transporter
AUL54_05940	COG1725	Transcriptional regulator
AUL54_05955	COG0655	NAD(P)H dehydrogenase (quinone) activity
AUL54_05960	COG2814	Major facilitator Superfamily
AUL54_05965	COG1566	PFAM secretion protein HlyD family protein
AUL54_05970	COG1846	Transcriptional regulator
AUL54_05980	COG2766	serine protein kinase
AUL54_05985	COG1664	Polymer-forming cytoskeletal
AUL54_05990	COG1664	Polymer-forming cytoskeletal
AUL54_05995	COG0789	Transcriptional regulator
AUL54_06000	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
AUL54_06010	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
AUL54_06015	COG3382	B3 4 domain protein
AUL54_06025	COG1476	TRANSCRIPTIONal
AUL54_06050	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AUL54_06055	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AUL54_06060	COG1116	anion transmembrane transporter activity
AUL54_06070	COG0753	catalase activity
AUL54_06075	COG4608	Belongs to the ABC transporter superfamily
AUL54_06080	COG0444	Belongs to the ABC transporter superfamily
AUL54_06085	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
AUL54_06090	COG0601	transmembrane transport
AUL54_06095	COG4166	transmembrane transport
AUL54_06105	COG0277	FAD linked oxidase domain protein
AUL54_06115	COG3340	Belongs to the peptidase S51 family
AUL54_06250	COG0735	belongs to the Fur family
AUL54_06255	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
AUL54_06265	COG4129	membrane
AUL54_06270	COG1132	(ABC) transporter
AUL54_06290	COG1028	Short-chain dehydrogenase reductase Sdr
AUL54_06300	COG1194	a g-specific adenine glycosylase
AUL54_06305	COG0457	Tetratricopeptide repeat
AUL54_06365	COG3953	SLT domain
AUL54_06365	COG5280	Phage tail tape measure protein TP901
AUL54_06405	COG0740	serine-type endopeptidase activity
AUL54_06460	COG1595	DNA-templated transcription, initiation
AUL54_06475	COG0305	Participates in initiation and elongation during chromosome replication
AUL54_06500	COG3646	Phage regulatory protein
AUL54_06500	COG3645	SOS response
AUL54_06535	COG0582	viral genome integration into host DNA
AUL54_06545	COG1988	membrane-bound metal-dependent
AUL54_06550	COG4485	Bacterial membrane protein, YfhO
AUL54_06555	COG0463	Glycosyl transferase, family 2
AUL54_06560	COG0596	Alpha beta hydrolase
AUL54_06565	COG5658	integral membrane protein
AUL54_06570	COG3103	Sh3 type 3 domain protein
AUL54_06585	COG2814	Major facilitator Superfamily
AUL54_06600	COG1090	epimerase
AUL54_06610	COG0778	Nitroreductase
AUL54_06615	COG0384	phenazine biosynthesis protein PhzF
AUL54_06620	COG0392	lysyltransferase activity
AUL54_06620	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
AUL54_06625	COG1846	Transcriptional regulator
AUL54_06630	COG2814	Major facilitator Superfamily
AUL54_06635	COG2318	DinB family
AUL54_06640	COG2732	(Barnase) inhibitor
AUL54_06645	COG3848	Pyruvate phosphate dikinase
AUL54_06645	COG0574	Belongs to the PEP-utilizing enzyme family
AUL54_06650	COG3936	Protein involved in polysaccharide intercellular adhesin (PIA) synthesis biofilm formation
AUL54_06655	COG2249	NAD(P)H dehydrogenase (quinone) activity
AUL54_06660	COG1695	Transcriptional regulator
AUL54_06670	COG2514	catechol 2,3-dioxygenase activity
AUL54_06675	COG2259	Doxx family
AUL54_06680	COG1132	(ABC) transporter
AUL54_06685	COG1132	(ABC) transporter
AUL54_06690	COG5434	Belongs to the glycosyl hydrolase 28 family
AUL54_06695	COG1263	PTS System
AUL54_06695	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AUL54_06700	COG1737	Transcriptional regulator
AUL54_06705	COG1486	melibiose metabolic process
AUL54_06715	COG3284	Transcriptional regulator
AUL54_06720	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AUL54_06725	COG0508	dehydrogenase complex catalyzes the overall conversion of
AUL54_06730	COG0022	dehydrogenase e1 component
AUL54_06735	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
AUL54_06740	COG4637	Psort location Cytoplasmic, score
AUL54_06745	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AUL54_06755	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
AUL54_06760	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
AUL54_06765	COG0598	Magnesium transport protein CorA
AUL54_06775	COG2084	Dehydrogenase
AUL54_06780	COG0726	polysaccharide deacetylase
AUL54_06790	COG0535	radical SAM domain protein
AUL54_06795	COG0668	transmembrane transport
AUL54_06805	COG0387	Pfam Sodium calcium exchanger
AUL54_06810	COG0477	Major facilitator Superfamily
AUL54_06815	COG1295	ribonuclease BN
AUL54_06820	COG4980	gas vesicle protein
AUL54_06825	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
AUL54_06835	COG2814	Major facilitator Superfamily
AUL54_06845	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
AUL54_06855	COG0693	protein deglycase activity
AUL54_06860	COG0737	Belongs to the 5'-nucleotidase family
AUL54_06875	COG0778	Nitroreductase
AUL54_06890	COG0071	Belongs to the small heat shock protein (HSP20) family
AUL54_06900	COG1368	sulfuric ester hydrolase activity
AUL54_06910	COG1263	PTS System
AUL54_06910	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AUL54_06915	COG0024	Methionine aminopeptidase
AUL54_06925	COG2258	MOSC domain
AUL54_06935	COG4362	Belongs to the NOS family. Bacterial NOS oxygenase subfamily
AUL54_06945	COG2851	Citrate transporter
AUL54_06950	COG3181	Tripartite tricarboxylate transporter family receptor
AUL54_06955	COG4565	transcriptional regulatory protein
AUL54_06960	COG3290	protein histidine kinase activity
AUL54_06980	COG0471	metal ion transport
AUL54_06985	COG3866	Pectate lyase
AUL54_07000	COG2130	NADP-dependent
AUL54_07010	COG0513	Belongs to the DEAD box helicase family
AUL54_07015	COG0488	(ABC) transporter
AUL54_07020	COG2814	Major facilitator Superfamily
AUL54_07025	COG0789	Transcriptional regulator
AUL54_07045	COG0488	(ABC) transporter
AUL54_07050	COG0463	Glycosyl transferase, family 2
AUL54_07050	COG0457	Tetratricopeptide repeat
AUL54_07055	COG1028	Short-chain dehydrogenase reductase Sdr
AUL54_07060	COG0840	transmembrane signaling receptor activity
AUL54_07065	COG1012	belongs to the aldehyde dehydrogenase family
AUL54_07070	COG0531	amino acid
AUL54_07075	COG2223	nitrite transmembrane transporter activity
AUL54_07080	COG1442	glycosyl transferase family 8
AUL54_07085	COG1216	Glycosyl transferase, family 2
AUL54_07090	COG1442	glycosyl transferase family 8
AUL54_07095	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AUL54_07100	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
AUL54_07105	COG1368	sulfuric ester hydrolase activity
AUL54_07110	COG2124	cytochrome p450
AUL54_07110	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
AUL54_07120	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
AUL54_07125	COG1846	Transcriptional regulator
AUL54_07130	COG0670	Belongs to the BI1 family
AUL54_07135	COG0196	riboflavin kinase activity
AUL54_07140	COG1366	Belongs to the anti-sigma-factor antagonist family
AUL54_07145	COG0346	lactoylglutathione lyase activity
AUL54_07150	COG2329	Antibiotic biosynthesis monooxygenase
AUL54_07155	COG2323	membrane
AUL54_07165	COG0454	-acetyltransferase
AUL54_07170	COG3546	catalase activity
AUL54_07195	COG5444	nuclease activity
AUL54_07225	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
AUL54_07230	COG1597	lipid kinase activity
AUL54_07235	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
AUL54_07240	COG1309	transcriptional regulator
AUL54_07260	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AUL54_07265	COG1285	pathogenesis
AUL54_07270	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
AUL54_07275	COG4851	CamS sex pheromone cAM373 precursor
AUL54_07285	COG0210	DNA helicase
AUL54_07295	COG0069	glutamate synthase activity
AUL54_07300	COG4496	protein, YerC YecD
AUL54_07305	COG1470	cell adhesion involved in biofilm formation
AUL54_07310	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
AUL54_07320	COG0151	Belongs to the GarS family
AUL54_07325	COG0138	bifunctional purine biosynthesis protein purh
AUL54_07330	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
AUL54_07340	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
AUL54_07355	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
AUL54_07360	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
AUL54_07365	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
AUL54_07370	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
AUL54_07375	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
AUL54_07395	COG3064	Membrane
AUL54_07400	COG2252	PERMEase
AUL54_07420	COG1305	Transglutaminase-like
AUL54_07425	COG1721	protein (some members contain a von Willebrand factor type A (vWA) domain
AUL54_07430	COG0714	Associated with various cellular activities
AUL54_07445	COG1794	racemase activity, acting on amino acids and derivatives
AUL54_07455	COG1181	Belongs to the D-alanine--D-alanine ligase family
AUL54_07470	COG0017	Asparaginyl-tRNA synthetase
AUL54_07475	COG1113	amino acid transport
AUL54_07480	COG2132	Multicopper oxidase
AUL54_07490	COG0823	Involved in the tonB-independent uptake of proteins
AUL54_07495	COG0797	Lytic transglycosylase with a strong preference for naked glycan strands that lack stem peptides
AUL54_07500	COG1063	alcohol dehydrogenase
AUL54_07505	COG1595	DNA-templated transcription, initiation
AUL54_07515	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
AUL54_07515	COG2755	lipolytic protein G-D-S-L family
AUL54_07520	COG4260	virion core protein, lumpy skin disease virus
AUL54_07525	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
AUL54_07530	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
AUL54_07535	COG1842	Phage shock protein A
AUL54_07545	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AUL54_07550	COG2211	Major facilitator Superfamily
AUL54_07555	COG1063	alcohol dehydrogenase
AUL54_07560	COG0457	Tetratricopeptide repeat
AUL54_07580	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
AUL54_07585	COG1266	CAAX protease self-immunity
AUL54_07595	COG0805	protein transport
AUL54_07600	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
AUL54_07615	COG0488	(ABC) transporter
AUL54_07620	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
AUL54_07625	COG0456	acetyltransferase
AUL54_07630	COG1214	PFAM Peptidase M22, glycoprotease
AUL54_07635	COG0802	atpase or kinase
AUL54_07640	COG0611	Catalyzes the ATP-dependent phosphorylation of thiamine- monophosphate (TMP) to form thiamine-pyrophosphate (TPP), the active form of vitamin B1
AUL54_07680	COG2814	Major facilitator Superfamily
AUL54_07685	COG0604	alcohol dehydrogenase
AUL54_07690	COG3832	glyoxalase III activity
AUL54_07700	COG0531	amino acid
AUL54_07705	COG1309	transcriptional regulator
AUL54_07710	COG2076	Multidrug Resistance protein
AUL54_07715	COG2076	Multidrug Resistance protein
AUL54_07720	COG2807	transmembrane transport
AUL54_07725	COG2186	Transcriptional regulator
AUL54_07730	COG2814	Major facilitator Superfamily
AUL54_07735	COG1388	LysM domain
AUL54_07740	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
AUL54_07755	COG1819	glycosyl
AUL54_07760	COG1802	Transcriptional regulator
AUL54_07765	COG0473	3-isopropylmalate dehydrogenase activity
AUL54_07770	COG0596	Alpha beta hydrolase
AUL54_07775	COG1051	belongs to the nudix hydrolase family
AUL54_07780	COG0456	acetyltransferase
AUL54_07785	COG0730	response to heat
AUL54_07795	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
AUL54_07800	COG2814	Major facilitator Superfamily
AUL54_07810	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
AUL54_07815	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AUL54_07825	COG2071	gamma-glutamyl-gamma-aminobutyrate hydrolase activity
AUL54_07830	COG2409	Drug exporters of the RND superfamily
AUL54_07835	COG2197	response regulator
AUL54_07840	COG4585	Histidine kinase
AUL54_07845	COG0110	maltose O-acetyltransferase activity
AUL54_07855	COG0738	Major facilitator superfamily
AUL54_07865	COG5577	PFAM Coat F domain
AUL54_07870	COG1063	alcohol dehydrogenase
AUL54_07880	COG5577	PFAM Coat F domain
AUL54_07915	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AUL54_07925	COG0789	Transcriptional regulator
AUL54_07930	COG1064	alcohol dehydrogenase
AUL54_07945	COG2318	DinB family
AUL54_07950	COG0456	acetyltransferase
AUL54_07955	COG0662	Cupin 2, conserved barrel domain protein
AUL54_07975	COG0277	FAD linked oxidase domain protein
AUL54_07990	COG0662	Cupin 2, conserved barrel domain protein
AUL54_07995	COG3621	Patatin-like phospholipase
AUL54_08000	COG2271	Major facilitator Superfamily
AUL54_08005	COG0456	acetyltransferase
AUL54_08005	COG1846	Transcriptional regulator
AUL54_08025	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
AUL54_08030	COG0477	Major facilitator Superfamily
AUL54_08050	COG2814	Major facilitator Superfamily
AUL54_08055	COG2807	transmembrane transport
AUL54_08065	COG0583	DNA-binding transcription factor activity
AUL54_08070	COG1329	Transcriptional regulator
AUL54_08075	COG1278	Cold shock
AUL54_08080	COG2910	NAD(P)H-binding
AUL54_08085	COG1959	2 iron, 2 sulfur cluster binding
AUL54_08090	COG2030	dehydratase
AUL54_08100	COG1846	Transcriptional regulator
AUL54_08105	COG1764	response to oxidative stress
AUL54_08130	COG2249	NAD(P)H dehydrogenase (quinone) activity
AUL54_08140	COG1959	2 iron, 2 sulfur cluster binding
AUL54_08145	COG1660	Displays ATPase and GTPase activities
AUL54_08155	COG0457	Tetratricopeptide repeat
AUL54_08160	COG1204	response to ionizing radiation
AUL54_08180	COG0741	lytic transglycosylase activity
AUL54_08180	COG0791	NLP P60 protein
AUL54_08185	COG5644	endopeptidase inhibitor activity
AUL54_08195	COG0433	COG0433 Predicted ATPase
AUL54_08240	COG2946	Replication initiation factor
AUL54_08245	COG1674	ftsk spoiiie
AUL54_08270	COG1396	sequence-specific DNA binding
AUL54_08275	COG2856	Zn peptidase
AUL54_08280	COG0582	viral genome integration into host DNA
AUL54_08325	COG2183	response to ionizing radiation
AUL54_08330	COG2208	phosphoserine phosphatase activity
AUL54_08335	COG1191	sigma factor activity
AUL54_08345	COG1366	Belongs to the anti-sigma-factor antagonist family
AUL54_08350	COG2208	phosphoserine phosphatase activity
AUL54_08355	COG2172	sigma factor antagonist activity
AUL54_08360	COG1366	Belongs to the anti-sigma-factor antagonist family
AUL54_08365	COG1366	Belongs to the anti-sigma-factor antagonist family
AUL54_08370	COG2337	Toxic component of a toxin-antitoxin (TA) module
AUL54_08375	COG0864	Transcriptional regulator
AUL54_08380	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
AUL54_08385	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
AUL54_08395	COG0705	Rhomboid family
AUL54_08400	COG3428	Bacterial PH domain
AUL54_08405	COG3402	PFAM membrane-flanked domain
AUL54_08410	COG0513	Belongs to the DEAD box helicase family
AUL54_08415	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
AUL54_08425	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AUL54_08430	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
AUL54_08440	COG1960	acyl-CoA dehydrogenase activity
AUL54_08450	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
AUL54_08455	COG1131	(ABC) transporter
AUL54_08460	COG0628	permease
AUL54_08465	COG1301	dicarboxylic acid transport
AUL54_08470	COG4565	transcriptional regulatory protein
AUL54_08475	COG3290	protein histidine kinase activity
AUL54_08480	COG1638	TRAP-type C4-dicarboxylate transport system periplasmic component
AUL54_08485	COG3546	catalase activity
AUL54_08490	COG2329	Antibiotic biosynthesis monooxygenase
AUL54_08495	COG0662	Cupin 2, conserved barrel domain protein
AUL54_08500	COG3729	General stress protein
AUL54_08505	COG2217	Heavy metal translocating P-type atpase
AUL54_08510	COG2076	Multidrug Resistance protein
AUL54_08520	COG4876	unkown
AUL54_08535	COG1914	H( )-stimulated, divalent metal cation uptake system
AUL54_08570	COG0028	Belongs to the TPP enzyme family
AUL54_08575	COG0494	nUDIX hydrolase
AUL54_08580	COG0531	amino acid
AUL54_08590	COG1215	transferase activity, transferring glycosyl groups
AUL54_08595	COG5298	Protein conserved in bacteria
AUL54_08600	COG3706	GGDEF domain
AUL54_08605	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
AUL54_08610	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
AUL54_08610	COG0551	DNA topoisomerase type I activity
AUL54_08615	COG1522	sequence-specific DNA binding
AUL54_08620	COG2814	Major facilitator Superfamily
AUL54_08630	COG3871	stress protein (general stress protein 26)
AUL54_08635	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AUL54_08640	COG1917	Cupin 2, conserved barrel domain protein
AUL54_08645	COG1028	Short-chain dehydrogenase reductase Sdr
AUL54_08650	COG0318	PFAM AMP-dependent synthetase and ligase
AUL54_08655	COG3711	transcriptional antiterminator
AUL54_08660	COG4989	oxidoreductase activity
AUL54_08665	COG0768	penicillin binding
AUL54_08670	COG2329	Antibiotic biosynthesis monooxygenase
AUL54_08680	COG2755	lipolytic protein G-D-S-L family
AUL54_08685	COG1414	Transcriptional regulator
AUL54_08690	COG1984	allophanate hydrolase subunit 2
AUL54_08695	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
AUL54_08705	COG1914	H( )-stimulated, divalent metal cation uptake system
AUL54_08715	COG0561	phosphatase activity
AUL54_08720	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
AUL54_08730	COG4668	phosphoenolpyruvate-dependent sugar phosphotransferase system
AUL54_08735	COG2213	PTS system mannitol-specific
AUL54_08745	COG1349	DNA-binding transcription factor activity
AUL54_08750	COG1276	copper resistance
AUL54_08750	COG2372	response to copper ion
AUL54_08755	COG4549	nuclear export factor GLE1
AUL54_08760	COG1028	Short-chain dehydrogenase reductase Sdr
AUL54_08765	COG4975	Glucose uptake
AUL54_08770	COG1012	belongs to the aldehyde dehydrogenase family
AUL54_08775	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
AUL54_08780	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AUL54_08785	COG0640	Transcriptional regulator
AUL54_08790	COG1359	(4S)-4-hydroxy-5-phosphonooxypentane-2,3-dione isomerase activity
AUL54_08795	COG0778	Nitroreductase
AUL54_08800	COG1309	transcriptional regulator
AUL54_08805	COG2814	Major facilitator Superfamily
AUL54_08810	COG4607	ABC-type enterochelin transport system periplasmic component
AUL54_08815	COG4604	ABC transporter, ATP-binding protein
AUL54_08820	COG4605	iron ion homeostasis
AUL54_08825	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AUL54_08830	COG0527	aspartate kinase activity
AUL54_08840	COG0457	Tetratricopeptide repeat
AUL54_08845	COG3850	Histidine kinase
AUL54_08845	COG5002	protein histidine kinase activity
AUL54_08850	COG0745	RESPONSE REGULATOR receiver
AUL54_08855	COG0577	efflux transmembrane transporter activity
AUL54_08860	COG1136	(ABC) transporter
AUL54_08865	COG2079	MmgE PrpD family protein
AUL54_08875	COG1126	abc transporter atp-binding protein
AUL54_08880	COG0765	amino acid transport
AUL54_08885	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AUL54_08900	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
AUL54_08910	COG0697	spore germination
AUL54_08920	COG5434	Belongs to the glycosyl hydrolase 28 family
AUL54_08925	COG3104	oligopeptide transport
AUL54_08940	COG0043	3-octaprenyl-4-hydroxybenzoate carboxy-lyase activity
AUL54_08945	COG0163	prenyltransferase activity
AUL54_08950	COG0583	DNA-binding transcription factor activity
AUL54_08955	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AUL54_08960	COG0765	amino acid transport
AUL54_08965	COG1126	abc transporter atp-binding protein
AUL54_08970	COG2364	Membrane
AUL54_08985	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
AUL54_08990	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AUL54_08995	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AUL54_09000	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AUL54_09005	COG1733	regulation of RNA biosynthetic process
AUL54_09010	COG0269	3-dehydro-L-gulonate-6-phosphate decarboxylase activity
AUL54_09015	COG0794	Belongs to the SIS family. GutQ KpsF subfamily
AUL54_09020	COG3209	COG3209 Rhs family protein
AUL54_09030	COG2723	6-phospho-beta-galactosidase activity
AUL54_09040	COG1714	RDD family
AUL54_09045	COG1063	alcohol dehydrogenase
AUL54_09050	COG0523	cobalamin synthesis protein
AUL54_09055	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
AUL54_09060	COG2146	nitrite reductase [NAD(P)H] activity
AUL54_09065	COG1587	Uroporphyrinogen-III synthase
AUL54_09065	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
AUL54_09075	COG2508	Transcriptional regulator
AUL54_09080	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
AUL54_09085	COG1012	belongs to the aldehyde dehydrogenase family
AUL54_09090	COG0506	proline dehydrogenase activity
AUL54_09095	COG3541	Predicted nucleotidyltransferase
AUL54_09100	COG3458	cephalosporin-C deacetylase activity
AUL54_09105	COG0703	Catalyzes the specific phosphorylation of the 3-hydroxyl group of shikimic acid using ATP as a cosubstrate
AUL54_09110	COG2271	Major facilitator Superfamily
AUL54_09130	COG3665	Urea carboxylase-associated protein
AUL54_09135	COG1113	amino acid transport
AUL54_09140	COG3403	YqcI/YcgG family
AUL54_09145	COG1280	lysine exporter protein (LysE YggA)
AUL54_09150	COG1846	Transcriptional regulator
AUL54_09155	COG2814	Major facilitator Superfamily
AUL54_09165	COG0366	Alpha amylase catalytic
AUL54_09175	COG1288	antiporter activity
AUL54_09180	COG1473	amidohydrolase
AUL54_09190	COG2113	Glycine betaine
AUL54_09195	COG4176	ABC-type proline glycine betaine transport system permease component
AUL54_09200	COG0517	IMP dehydrogenase activity
AUL54_09200	COG4175	Glycine betaine
AUL54_09205	COG0477	Major facilitator Superfamily
AUL54_09210	COG3853	Toxic anion resistance protein (TelA)
AUL54_09220	COG0861	Integral membrane protein TerC family
AUL54_09225	COG2310	stress, protein
AUL54_09230	COG2310	stress, protein
AUL54_09235	COG2310	stress, protein
AUL54_09245	COG1108	ABC-type Mn2 Zn2 transport systems permease components
AUL54_09250	COG1121	(ABC) transporter
AUL54_09255	COG0803	Belongs to the bacterial solute-binding protein 9 family
AUL54_09260	COG0366	Alpha amylase catalytic
AUL54_09270	COG1028	Short-chain dehydrogenase reductase Sdr
AUL54_09275	COG0457	Tetratricopeptide repeat
AUL54_09280	COG1876	peptidase activity
AUL54_09285	COG1595	DNA-templated transcription, initiation
AUL54_09290	COG1595	DNA-templated transcription, initiation
AUL54_09300	COG0667	Aldo Keto reductase
AUL54_09305	COG3012	SEC-C Motif Domain Protein
AUL54_09305	COG1405	negative regulation of cell septum assembly
AUL54_09310	COG1075	acetyltransferases and hydrolases with the alpha beta hydrolase fold
AUL54_09315	COG0252	asparaginase activity
AUL54_09320	COG1309	transcriptional regulator
AUL54_09325	COG0477	Major facilitator Superfamily
AUL54_09330	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
AUL54_09335	COG2039	Removes 5-oxoproline from various penultimate amino acid residues except L-proline
AUL54_09340	COG0805	protein transport
AUL54_09345	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
AUL54_09350	COG3540	Alkaline phosphatase
AUL54_09355	COG3773	Cell wall hydrolase
AUL54_09365	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AUL54_09370	COG2259	Doxx family
AUL54_09375	COG0346	lactoylglutathione lyase activity
AUL54_09380	COG0778	Nitroreductase
AUL54_09385	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
AUL54_09390	COG0784	Response regulator, receiver
AUL54_09395	COG4191	Histidine kinase
AUL54_09400	COG2066	Belongs to the glutaminase family
AUL54_09405	COG1115	amino acid carrier protein
AUL54_09410	COG2040	homocysteine
AUL54_09415	COG0833	amino acid
AUL54_09420	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AUL54_09425	COG1301	dicarboxylic acid transport
AUL54_09440	COG0688	phosphatidylethanolamine metabolic process
AUL54_09445	COG0586	Pfam SNARE associated Golgi protein
AUL54_09450	COG1183	phosphatidylcholine synthase activity
AUL54_09460	COG0371	Dehydrogenase
AUL54_09470	COG5444	nuclease activity
AUL54_09480	COG3409	Peptidoglycan-binding domain 1 protein
AUL54_09490	COG2368	4-hydroxyphenylacetate
AUL54_09500	COG2271	Major facilitator Superfamily
AUL54_09505	COG0584	glycerophosphoryl diester phosphodiesterase
AUL54_09520	COG3863	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
AUL54_09525	COG0531	amino acid
AUL54_09555	COG0842	Transport permease protein
AUL54_09555	COG1511	domain protein
AUL54_09565	COG1131	(ABC) transporter
AUL54_09570	COG2197	response regulator
AUL54_09575	COG4585	Histidine kinase
AUL54_09580	COG1011	Hydrolase
AUL54_09585	COG1113	amino acid transport
AUL54_09590	COG1846	Transcriptional regulator
AUL54_09595	COG1380	Effector of murein hydrolase LrgA
AUL54_09600	COG1346	cytolysis
AUL54_09625	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
AUL54_09640	COG4856	YbbR-like protein
AUL54_09645	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
AUL54_09650	COG5662	AntiSigma factor
AUL54_09655	COG1595	DNA-templated transcription, initiation
AUL54_09685	COG1683	Conserved Protein
AUL54_09690	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
AUL54_09700	COG1263	PTS System
AUL54_09700	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AUL54_09705	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
AUL54_09710	COG1472	Belongs to the glycosyl hydrolase 3 family
AUL54_09715	COG3876	Protein conserved in bacteria
AUL54_09720	COG2207	Transcriptional regulator
AUL54_09720	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
AUL54_09725	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
AUL54_09730	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AUL54_09735	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AUL54_09740	COG2819	hydrolase of the alpha beta superfamily
AUL54_09745	COG0385	Bile acid
AUL54_09750	COG0659	secondary active sulfate transmembrane transporter activity
AUL54_09765	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
AUL54_09770	COG0738	Major facilitator superfamily
AUL54_09830	COG0726	polysaccharide deacetylase
AUL54_09835	COG2194	sulfuric ester hydrolase activity
AUL54_09845	COG0489	protein tyrosine kinase activity
AUL54_09850	COG0860	N-Acetylmuramoyl-L-alanine amidase
AUL54_09860	COG2318	DinB family
AUL54_09865	COG2226	methyltransferase
AUL54_09885	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
AUL54_09890	COG1122	ATPase activity
AUL54_09895	COG1122	ATPase activity
AUL54_09920	COG0257	Belongs to the bacterial ribosomal protein bL36 family
AUL54_09925	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
AUL54_09930	COG0024	Methionine aminopeptidase
AUL54_09940	COG0201	protein transport
AUL54_09950	COG1841	ribosomal large subunit assembly
AUL54_09955	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
AUL54_09995	COG0255	Belongs to the universal ribosomal protein uL29 family
AUL54_10000	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
AUL54_10010	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
AUL54_10015	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
AUL54_10025	COG0089	rRNA binding
AUL54_10040	COG0051	transcription antitermination factor activity, RNA binding
AUL54_10045	COG0596	Alpha beta hydrolase
AUL54_10070	COG1358	cellular component organization or biogenesis
AUL54_10085	COG2813	Specifically methylates the guanine in position
AUL54_10090	COG0222	ribosome binding
AUL54_10105	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
AUL54_10110	COG0250	Participates in transcription elongation, termination and antitermination
AUL54_10115	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
AUL54_10120	COG0267	Belongs to the bacterial ribosomal protein bL33 family
AUL54_10125	COG1595	DNA-templated transcription, initiation
AUL54_10130	COG3688	RNA-binding protein containing a PIN domain
AUL54_10135	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AUL54_10140	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
AUL54_10150	COG1045	serine acetyltransferase
AUL54_10170	COG4956	integral membrane protein (PIN domain superfamily)
AUL54_10175	COG1623	Has also diadenylate cyclase activity, catalyzing the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP). c- di-AMP acts as a signaling molecule that couples DNA integrity with progression of sporulation. The rise in c-di-AMP level generated by DisA while scanning the chromosome, operates as a positive signal that advances sporulation
AUL54_10180	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
AUL54_10185	COG0542	response to heat
AUL54_10195	COG3880	PFAM UvrB UvrC protein
AUL54_10200	COG4463	regulation of RNA biosynthetic process
AUL54_10280	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
AUL54_10285	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
AUL54_10290	COG1396	sequence-specific DNA binding
AUL54_10295	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
AUL54_10300	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
AUL54_10305	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
AUL54_10310	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AUL54_10315	COG0512	Glutamine amidotransferase of anthranilate synthase
AUL54_10320	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
AUL54_10325	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
AUL54_10330	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
AUL54_10345	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
AUL54_10355	COG0037	tRNA processing
AUL54_10360	COG0515	serine threonine protein kinase
AUL54_10365	COG2304	oxidoreductase activity
AUL54_10370	COG2208	phosphoserine phosphatase activity
AUL54_10385	COG1098	S1 RNA binding domain
AUL54_10390	COG2919	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic
AUL54_10405	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
AUL54_10410	COG3956	TIGRFAM MazG family protein
AUL54_10415	COG2244	polysaccharide biosynthetic process
AUL54_10420	COG2002	toxin-antitoxin pair type II binding
AUL54_10425	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
AUL54_10445	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
AUL54_10460	COG0251	oxidation-reduction process
AUL54_10465	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
AUL54_10480	COG4466	Protein conserved in bacteria
AUL54_10490	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
AUL54_10495	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
AUL54_10500	COG3584	3D domain protein
AUL54_10500	COG3583	domain protein
AUL54_10505	COG0084	hydrolase, TatD family'
AUL54_10510	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AUL54_10510	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AUL54_10515	COG2002	toxin-antitoxin pair type II binding
AUL54_10520	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
AUL54_10530	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
AUL54_10540	COG1774	PSP1 C-terminal conserved region
AUL54_10545	COG0470	DNA polymerase III
AUL54_10550	COG1728	Protein conserved in bacteria
AUL54_10555	COG3870	Protein conserved in bacteria
AUL54_10565	COG1982	Orn Lys Arg decarboxylase major
AUL54_10570	COG3853	Toxic anion resistance protein (TelA)
AUL54_10575	COG4915	5-bromo-4-chloroindolyl phosphate hydrolysis protein
AUL54_10625	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
AUL54_10630	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
AUL54_10645	COG0590	tRNA wobble adenosine to inosine editing
AUL54_10650	COG1335	isochorismatase
AUL54_10655	COG3858	chitin binding
AUL54_10655	COG1388	LysM domain
AUL54_10660	COG1428	Deoxynucleoside kinase
AUL54_10665	COG1428	Deoxynucleoside kinase
AUL54_10695	COG1686	Belongs to the peptidase S11 family
AUL54_10700	COG0516	GMP reductase activity
AUL54_10700	COG0517	IMP dehydrogenase activity
AUL54_10735	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
AUL54_10740	COG0187	DNA topoisomerase II activity
AUL54_10755	COG2501	S4 domain
AUL54_10760	COG0592	DNA-directed DNA polymerase activity
AUL54_10775	COG0706	membrane insertase activity
AUL54_10780	COG1847	R3H domain protein
AUL54_10805	COG1192	Involved in chromosome partitioning
AUL54_10810	COG1475	DNA binding
AUL54_10825	COG3949	Membrane
AUL54_10830	COG4481	Protein conserved in bacteria
AUL54_10835	COG0243	molybdopterin cofactor binding
AUL54_10840	COG0012	GTP binding
AUL54_10850	COG0629	single-stranded DNA binding
AUL54_10860	COG2169	Transcriptional regulator
AUL54_10865	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
AUL54_10870	COG0708	Exodeoxyribonuclease III
AUL54_10875	COG1609	Transcriptional regulator
AUL54_10880	COG0346	lactoylglutathione lyase activity
AUL54_10885	COG0477	Major facilitator Superfamily
AUL54_10885	COG2814	Major facilitator Superfamily
AUL54_10890	COG1266	CAAX protease self-immunity
AUL54_10895	COG1331	Highly conserved protein containing a thioredoxin domain
AUL54_10900	COG2195	Cleaves the N-terminal amino acid of tripeptides
AUL54_10910	COG1131	(ABC) transporter
AUL54_10945	COG0697	spore germination
AUL54_10950	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AUL54_10955	COG2153	protein acetylation
AUL54_10960	COG1846	Transcriptional regulator
AUL54_10965	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
AUL54_10970	COG1846	Transcriptional regulator
AUL54_10975	COG0778	Nitroreductase
AUL54_10985	COG0583	DNA-binding transcription factor activity
AUL54_10990	COG2211	Major facilitator Superfamily
AUL54_10995	COG2318	DinB family
AUL54_11000	COG1802	Transcriptional regulator
AUL54_11005	COG1621	beta-fructofuranosidase activity
AUL54_11010	COG1621	beta-fructofuranosidase activity
AUL54_11015	COG0697	spore germination
AUL54_11025	COG1733	regulation of RNA biosynthetic process
AUL54_11030	COG5577	PFAM Coat F domain
AUL54_11035	COG4241	membrane
AUL54_11040	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
AUL54_11060	COG0438	transferase activity, transferring glycosyl groups
AUL54_11065	COG0027	Involved in the de novo purine biosynthesis. Catalyzes the transfer of formate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR). Formate is provided by PurU via hydrolysis of 10-formyl-tetrahydrofolate
AUL54_11075	COG0438	transferase activity, transferring glycosyl groups
AUL54_11090	COG0305	Participates in initiation and elongation during chromosome replication
AUL54_11095	COG0346	lactoylglutathione lyase activity
AUL54_11130	COG0745	RESPONSE REGULATOR receiver
AUL54_11135	COG5002	protein histidine kinase activity
AUL54_11140	COG4863	YycH protein
AUL54_11145	COG4853	Protein conserved in bacteria
AUL54_11150	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
AUL54_11155	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AUL54_11170	COG3829	transcription factor binding
AUL54_11175	COG0640	Transcriptional regulator
AUL54_11180	COG5658	integral membrane protein
AUL54_11185	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
AUL54_11190	COG0833	amino acid
AUL54_11195	COG0010	Belongs to the arginase family
AUL54_11200	COG0457	Tetratricopeptide repeat
AUL54_11205	COG0456	acetyltransferase
AUL54_11210	COG3863	Permuted papain-like amidase enzyme, YaeF/YiiX, C92 family
AUL54_11265	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
AUL54_11270	COG2068	MobA-Related Protein
AUL54_11285	COG2080	2 iron, 2 sulfur cluster binding
AUL54_11295	COG1113	amino acid transport
AUL54_11300	COG3634	alkyl hydroperoxide reductase activity
AUL54_11305	COG0450	alkyl hydroperoxide reductase
AUL54_11315	COG1714	RDD family
AUL54_11320	COG2814	Major facilitator Superfamily
AUL54_11325	COG0640	Transcriptional regulator
AUL54_11335	COG1520	Part of the outer membrane protein assembly complex, which is involved in assembly and insertion of beta-barrel proteins into the outer membrane
AUL54_11340	COG1012	belongs to the aldehyde dehydrogenase family
AUL54_11345	COG1309	transcriptional regulator
AUL54_11350	COG3239	Fatty acid desaturase
AUL54_11355	COG4585	Histidine kinase
AUL54_11360	COG2197	response regulator
AUL54_11365	COG1028	Short-chain dehydrogenase reductase Sdr
AUL54_11380	COG2814	Major facilitator Superfamily
AUL54_11385	COG0667	Aldo Keto reductase
AUL54_11390	COG1349	DNA-binding transcription factor activity
AUL54_11425	COG1082	Xylose isomerase domain protein TIM barrel
AUL54_11435	COG0191	fructose-bisphosphate aldolase activity
AUL54_11440	COG0745	RESPONSE REGULATOR receiver
AUL54_11445	COG2205	protein histidine kinase activity
AUL54_11450	COG1136	(ABC) transporter
AUL54_11455	COG0577	efflux transmembrane transporter activity
AUL54_11460	COG5294	Protein conserved in bacteria
AUL54_11465	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
AUL54_11495	COG0561	phosphatase activity
AUL54_11500	COG2390	Transcriptional regulator
AUL54_11510	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
AUL54_11515	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
AUL54_11535	COG2190	(PTS) system
AUL54_11535	COG1263	PTS System
AUL54_11535	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AUL54_11540	COG2723	6-phospho-beta-galactosidase activity
AUL54_11545	COG0589	response to stress
AUL54_11550	COG0697	spore germination
AUL54_11560	COG3209	COG3209 Rhs family protein
AUL54_11640	COG0513	Belongs to the DEAD box helicase family
AUL54_11645	COG2270	Major facilitator Superfamily
AUL54_11650	COG3711	transcriptional antiterminator
AUL54_11655	COG2273	Hydrolase Family 16
AUL54_11660	COG2851	Citrate transporter
AUL54_11665	COG0753	catalase activity
AUL54_11665	COG0693	protein deglycase activity
AUL54_11680	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
AUL54_11685	COG0500	methyltransferase
AUL54_11690	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
AUL54_11695	COG4894	glucomannan catabolic process
AUL54_11705	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
AUL54_11715	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
AUL54_11720	COG2508	Transcriptional regulator
AUL54_11725	COG3842	ATPase activity
AUL54_11730	COG0726	polysaccharide deacetylase
AUL54_11735	COG3493	citrate carrier protein
AUL54_11740	COG1271	oxidase subunit
AUL54_11745	COG1294	oxidase, subunit
AUL54_11750	COG4988	ABC transporter
AUL54_11755	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
AUL54_11760	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
AUL54_11765	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
AUL54_11770	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
AUL54_11775	COG0753	catalase activity
AUL54_11780	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
AUL54_11785	COG0640	Transcriptional regulator
AUL54_11790	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
AUL54_11795	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AUL54_11800	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AUL54_11810	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
AUL54_11810	COG3711	transcriptional antiterminator
AUL54_11815	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
AUL54_11820	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
AUL54_11825	COG1447	Phosphotransferase system cellobiose-specific component IIA
AUL54_11830	COG1486	melibiose metabolic process
AUL54_11865	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
AUL54_11870	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
AUL54_11880	COG1696	Membrane protein involved in D-alanine export
AUL54_11895	COG1575	Belongs to the MenA family. Type 1 subfamily
AUL54_11900	COG2357	RelA SpoT domain protein
AUL54_11905	COG1442	glycosyl transferase family 8
AUL54_11910	COG1404	Belongs to the peptidase S8 family
AUL54_11915	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
AUL54_11920	COG0346	lactoylglutathione lyase activity
AUL54_11925	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
AUL54_11930	COG4895	conserved protein (DUF2196)
AUL54_11935	COG1346	cytolysis
AUL54_11945	COG0583	DNA-binding transcription factor activity
AUL54_11960	COG0672	)-iron permease
AUL54_11965	COG2822	iron ion transport
AUL54_11970	COG2837	iron assimilation
AUL54_11975	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
AUL54_11985	COG2813	Specifically methylates the guanine in position
AUL54_11995	COG1309	transcriptional regulator
AUL54_12000	COG2246	polysaccharide biosynthetic process
AUL54_12005	COG0153	Catalyzes the transfer of the gamma-phosphate of ATP to D-galactose to form alpha-D-galactose-1-phosphate (Gal-1-P)
AUL54_12010	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
AUL54_12015	COG2261	transglycosylase associated protein
AUL54_12020	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
AUL54_12025	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
AUL54_12045	COG0454	-acetyltransferase
AUL54_12050	COG0772	Belongs to the SEDS family
AUL54_12055	COG0778	Nitroreductase
AUL54_12065	COG1404	Belongs to the peptidase S8 family
AUL54_12075	COG3711	transcriptional antiterminator
AUL54_12080	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
AUL54_12080	COG1263	PTS System
AUL54_12085	COG1621	beta-fructofuranosidase activity
AUL54_12095	COG0351	phosphomethylpyrimidine kinase
AUL54_12100	COG1695	Transcriptional regulator
AUL54_12115	COG1216	Glycosyl transferase, family 2
AUL54_12130	COG2233	PERMEase
AUL54_12135	COG2363	Small membrane protein
AUL54_12145	COG0463	Glycosyl transferase, family 2
AUL54_12150	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
AUL54_12155	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
AUL54_12160	COG0456	acetyltransferase
AUL54_12165	COG2089	acid synthase
AUL54_12170	COG1861	Spore coat polysaccharide biosynthesis protein F CMP-KDO synthetase
AUL54_12175	COG3980	spore coat polysaccharide biosynthesis protein
AUL54_12180	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
AUL54_12185	COG1088	dTDP-glucose 4,6-dehydratase activity
AUL54_12190	COG1091	dTDP-4-dehydrorhamnose reductase activity
AUL54_12195	COG1898	dTDP-4-dehydrorhamnose 3,5-epimerase activity
AUL54_12200	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
AUL54_12205	COG1012	belongs to the aldehyde dehydrogenase family
AUL54_12210	COG4187	Peptidase family M20/M25/M40
AUL54_12215	COG0833	amino acid
AUL54_12220	COG2814	Major facilitator Superfamily
AUL54_12225	COG2814	Major facilitator Superfamily
AUL54_12255	COG0436	Aminotransferase
AUL54_12260	COG1028	Short-chain dehydrogenase reductase Sdr
AUL54_12270	COG0280	phosphate acetyltransferase
AUL54_12275	COG2855	membrane
AUL54_12280	COG0583	DNA-binding transcription factor activity
AUL54_12310	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
AUL54_12315	COG1131	(ABC) transporter
AUL54_12325	COG1695	Transcriptional regulator
AUL54_12340	COG1078	dGTPase activity
AUL54_12345	COG3465	dGTPase activity
AUL54_12350	COG0531	amino acid
AUL54_12355	COG1846	Transcriptional regulator
AUL54_12360	COG1942	4-Oxalocrotonate Tautomerase
AUL54_12365	COG1994	Peptidase M50
AUL54_12380	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AUL54_12385	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
AUL54_12390	COG0010	Belongs to the arginase family
AUL54_12395	COG0457	Tetratricopeptide repeat
AUL54_12400	COG4506	Protein conserved in bacteria
AUL54_12410	COG2223	nitrite transmembrane transporter activity
AUL54_12415	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AUL54_12425	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
AUL54_12430	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
AUL54_12435	COG1140	nitrate reductase beta subunit
AUL54_12440	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
AUL54_12445	COG2181	nitrate reductase activity
AUL54_12455	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AUL54_12460	COG1132	(ABC) transporter
AUL54_12475	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AUL54_12480	COG2181	nitrate reductase activity
AUL54_12480	COG0247	lactate metabolic process
AUL54_12495	COG4821	SIS domain
AUL54_12500	COG2204	response regulator
AUL54_12505	COG0191	fructose-bisphosphate aldolase activity
AUL54_12515	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
AUL54_12520	COG1494	fructose-1,6-bisphosphatase
AUL54_12530	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
AUL54_12535	COG0254	rRNA binding
AUL54_12545	COG0281	malic enzyme
AUL54_12550	COG0679	Auxin Efflux Carrier
AUL54_12555	COG0789	Transcriptional regulator
AUL54_12560	COG0346	lactoylglutathione lyase activity
AUL54_12565	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
AUL54_12570	COG2890	protein-(glutamine-N5) methyltransferase activity
AUL54_12590	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
AUL54_12595	COG0009	L-threonylcarbamoyladenylate synthase
AUL54_12605	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
AUL54_12610	COG0698	ribose 5-phosphate isomerase
AUL54_12640	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
AUL54_12680	COG4836	Membrane
AUL54_12690	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
AUL54_12695	COG2385	sporulation resulting in formation of a cellular spore
AUL54_12700	COG2304	oxidoreductase activity
AUL54_12705	COG2304	oxidoreductase activity
AUL54_12710	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
AUL54_12720	COG0457	Tetratricopeptide repeat
AUL54_12725	COG1994	Peptidase M50
AUL54_12730	COG3237	CsbD-like
AUL54_12735	COG0831	urea catabolic process
AUL54_12750	COG1959	2 iron, 2 sulfur cluster binding
AUL54_12755	COG0726	polysaccharide deacetylase
AUL54_12765	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AUL54_12780	COG1247	-acetyltransferase
AUL54_12785	COG0739	heme binding
AUL54_12795	COG0671	phosphoesterase, PA-phosphatase related
AUL54_12800	COG0772	Belongs to the SEDS family
AUL54_12805	COG0347	Belongs to the P(II) protein family
AUL54_12810	COG0004	ammonium transporteR
AUL54_12815	COG1335	isochorismatase
AUL54_12820	COG0477	Major facilitator Superfamily
AUL54_12825	COG1953	Uracil, thiamine, allantoin
AUL54_12830	COG2814	Major facilitator Superfamily
AUL54_12835	COG1846	Transcriptional regulator
AUL54_12840	COG1609	Transcriptional regulator
AUL54_12845	COG1077	Cell shape determining protein MreB Mrl
AUL54_12850	COG4786	Flagellar basal body rod
AUL54_12855	COG4786	Flagellar basal body rod
AUL54_12860	COG0457	Tetratricopeptide repeat
AUL54_12890	COG1349	DNA-binding transcription factor activity
AUL54_12895	COG0561	phosphatase activity
AUL54_12900	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
AUL54_12905	COG4715	Zinc finger, swim domain protein
AUL54_12915	COG3944	biosynthesis protein
AUL54_12920	COG0489	protein tyrosine kinase activity
AUL54_12925	COG4464	protein tyrosine phosphatase activity
AUL54_12930	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
AUL54_12945	COG5444	nuclease activity
AUL54_12965	COG2059	Chromate
AUL54_12970	COG2059	Chromate
AUL54_12975	COG1522	sequence-specific DNA binding
AUL54_12980	COG0405	Gamma-glutamyltransferase
AUL54_12990	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
AUL54_13000	COG5337	Spore coat protein CotH
AUL54_13015	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
AUL54_13020	COG0583	DNA-binding transcription factor activity
AUL54_13025	COG0028	Belongs to the TPP enzyme family
AUL54_13030	COG3527	Alpha-acetolactate decarboxylase
AUL54_13035	COG2249	NAD(P)H dehydrogenase (quinone) activity
AUL54_13040	COG3103	Sh3 type 3 domain protein
AUL54_13045	COG1879	ABC-type sugar transport system periplasmic component
AUL54_13050	COG1172	Belongs to the binding-protein-dependent transport system permease family
AUL54_13055	COG1129	ABC transporter
AUL54_13065	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AUL54_13070	COG1609	Transcriptional regulator
AUL54_13080	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
AUL54_13090	COG2843	Capsule synthesis protein
AUL54_13095	COG0791	NLP P60 protein
AUL54_13100	COG2433	Pfam Transposase IS66
AUL54_13105	COG0561	phosphatase activity
AUL54_13110	COG1316	TRANSCRIPTIONal
AUL54_13115	COG2814	Major facilitator Superfamily
AUL54_13120	COG0463	Glycosyl transferase, family 2
AUL54_13130	COG0814	amino acid
AUL54_13135	COG0697	spore germination
AUL54_13140	COG1482	cell wall glycoprotein biosynthetic process
AUL54_13145	COG4193	domain, Protein
AUL54_13150	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
AUL54_13155	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
AUL54_13160	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
AUL54_13170	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
AUL54_13175	COG1682	transport, permease protein
AUL54_13180	COG1134	teichoic acid transport
AUL54_13185	COG1210	Utp--glucose-1-phosphate uridylyltransferase
AUL54_13190	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
AUL54_13195	COG1316	TRANSCRIPTIONal
AUL54_13205	COG2385	sporulation resulting in formation of a cellular spore
AUL54_13205	COG2247	cell wall binding repeat
AUL54_13210	COG0860	N-Acetylmuramoyl-L-alanine amidase
AUL54_13210	COG2247	cell wall binding repeat
AUL54_13220	COG2244	polysaccharide biosynthetic process
AUL54_13225	COG0297	glycogen (starch) synthase activity
AUL54_13225	COG0438	transferase activity, transferring glycosyl groups
AUL54_13230	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
AUL54_13235	COG3307	-O-antigen
AUL54_13240	COG3206	protein involved in exopolysaccharide biosynthesis
AUL54_13245	COG1215	transferase activity, transferring glycosyl groups
AUL54_13250	COG0438	transferase activity, transferring glycosyl groups
AUL54_13255	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
AUL54_13260	COG1316	TRANSCRIPTIONal
AUL54_13265	COG1739	Uncharacterized protein family UPF0029
AUL54_13270	COG4585	Histidine kinase
AUL54_13275	COG2197	response regulator
AUL54_13280	COG1307	EDD domain protein, DegV family
AUL54_13285	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
AUL54_13295	COG1040	competence protein
AUL54_13305	COG2747	anti-sigma28 factor FlgM
AUL54_13310	COG3418	PFAM FlgN family protein
AUL54_13315	COG4786	Flagellar basal body rod
AUL54_13315	COG1256	bacterial-type flagellum assembly
AUL54_13320	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AUL54_13340	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
AUL54_13345	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
AUL54_13350	COG1516	flagellar protein fliS
AUL54_13365	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
AUL54_13375	COG1186	Peptide chain release factor 2 directs the termination of translation in response to the peptide chain termination codons UGA and UAA
AUL54_13380	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
AUL54_13385	COG2010	Cytochrome c
AUL54_13390	COG2884	Cell division ATP-binding protein ftsE
AUL54_13395	COG2177	Part of the ABC transporter FtsEX involved in
AUL54_13400	COG3420	alginic acid biosynthetic process
AUL54_13405	COG0793	Belongs to the peptidase S41A family
AUL54_13405	COG3409	Peptidoglycan-binding domain 1 protein
AUL54_13415	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AUL54_13425	COG2814	Major facilitator Superfamily
AUL54_13430	COG1309	transcriptional regulator
AUL54_13435	COG0574	Belongs to the PEP-utilizing enzyme family
AUL54_13435	COG3848	Pyruvate phosphate dikinase
AUL54_13440	COG4897	Protein conserved in bacteria
AUL54_13450	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
AUL54_13465	COG3595	metallopeptidase activity
AUL54_13470	COG1983	PspC domain protein
AUL54_13475	COG1950	PFAM Membrane protein of
AUL54_13480	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
AUL54_13485	COG1309	transcriptional regulator
AUL54_13500	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
AUL54_13520	COG0110	maltose O-acetyltransferase activity
AUL54_13525	COG4990	cell redox homeostasis
AUL54_13540	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
AUL54_13565	COG0140	phosphoribosyl-ATP diphosphatase activity
AUL54_13565	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
AUL54_13570	COG1132	(ABC) transporter
AUL54_13580	COG0745	RESPONSE REGULATOR receiver
AUL54_13585	COG5002	protein histidine kinase activity
AUL54_13590	COG0457	Tetratricopeptide repeat
AUL54_13600	COG3883	PFAM NLP P60 protein
AUL54_13600	COG0791	NLP P60 protein
AUL54_13605	COG0492	ferredoxin-NADP+ reductase activity
AUL54_13610	COG1051	belongs to the nudix hydrolase family
AUL54_13620	COG0391	Required for morphogenesis under gluconeogenic growth conditions
AUL54_13630	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
AUL54_13635	COG2162	N-hydroxyarylamine O-acetyltransferase activity
AUL54_13640	COG4290	ribonuclease
AUL54_13645	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
AUL54_13650	COG0288	reversible hydration of carbon dioxide
AUL54_13655	COG0659	secondary active sulfate transmembrane transporter activity
AUL54_13660	COG1694	Mazg nucleotide pyrophosphohydrolase
AUL54_13665	COG1611	Belongs to the LOG family
AUL54_13675	COG0477	Major facilitator Superfamily
AUL54_13675	COG2814	Major facilitator Superfamily
AUL54_13680	COG2828	Protein conserved in bacteria
AUL54_13685	COG0583	DNA-binding transcription factor activity
AUL54_13695	COG1609	Transcriptional regulator
AUL54_13765	COG3479	Phenolic acid decarboxylase
AUL54_13770	COG0456	acetyltransferase
AUL54_13775	COG2364	Membrane
AUL54_13780	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
AUL54_13790	COG2272	Belongs to the type-B carboxylesterase lipase family
AUL54_13795	COG1396	sequence-specific DNA binding
AUL54_13800	COG3944	biosynthesis protein
AUL54_13805	COG0489	protein tyrosine kinase activity
AUL54_13810	COG1086	Polysaccharide biosynthesis protein
AUL54_13815	COG0438	transferase activity, transferring glycosyl groups
AUL54_13820	COG1215	transferase activity, transferring glycosyl groups
AUL54_13825	COG0438	transferase activity, transferring glycosyl groups
AUL54_13835	COG1216	Glycosyl transferase, family 2
AUL54_13840	COG5039	Polysaccharide pyruvyl transferase
AUL54_13845	COG1216	Glycosyl transferase, family 2
AUL54_13850	COG2244	polysaccharide biosynthetic process
AUL54_13855	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
AUL54_13860	COG0110	maltose O-acetyltransferase activity
AUL54_13865	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
AUL54_13870	COG5039	Polysaccharide pyruvyl transferase
AUL54_13880	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
AUL54_13885	COG1620	l-lactate permease
AUL54_13890	COG2186	Transcriptional regulator
AUL54_13895	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
AUL54_13920	COG1070	Carbohydrate kinase
AUL54_13925	COG1737	Transcriptional regulator
AUL54_13930	COG1113	amino acid transport
AUL54_13940	COG2801	Transposase and inactivated derivatives
AUL54_13945	COG0697	spore germination
AUL54_13950	COG0583	DNA-binding transcription factor activity
AUL54_13960	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AUL54_13965	COG1609	Transcriptional regulator
AUL54_13970	COG2814	Major facilitator Superfamily
AUL54_13975	COG2390	Transcriptional regulator
AUL54_13980	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
AUL54_13985	COG0126	phosphoglycerate kinase activity
AUL54_14005	COG0456	acetyltransferase
AUL54_14010	COG4640	response to antibiotic
AUL54_14015	COG3064	Membrane
AUL54_14025	COG2095	MarC family integral membrane protein
AUL54_14030	COG1510	regulation of RNA biosynthetic process
AUL54_14035	COG1125	glycine betaine transport
AUL54_14035	COG0517	IMP dehydrogenase activity
AUL54_14040	COG1174	glycine betaine transport
AUL54_14045	COG1732	Glycine betaine
AUL54_14050	COG1174	glycine betaine transport
AUL54_14055	COG1510	regulation of RNA biosynthetic process
AUL54_14060	COG0517	IMP dehydrogenase activity
AUL54_14060	COG1125	glycine betaine transport
AUL54_14070	COG1732	Glycine betaine
AUL54_14075	COG1174	glycine betaine transport
AUL54_14105	COG1733	regulation of RNA biosynthetic process
AUL54_14110	COG1396	sequence-specific DNA binding
AUL54_14115	COG1396	sequence-specific DNA binding
AUL54_14120	COG1476	TRANSCRIPTIONal
AUL54_14125	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
AUL54_14130	COG1647	Serine aminopeptidase, S33
AUL54_14135	COG0557	exoribonuclease II activity
AUL54_14170	COG2732	(Barnase) inhibitor
AUL54_14175	COG1028	Short-chain dehydrogenase reductase Sdr
AUL54_14180	COG0583	DNA-binding transcription factor activity
AUL54_14185	COG0454	-acetyltransferase
AUL54_14190	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AUL54_14195	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AUL54_14200	COG0765	amino acid transport
AUL54_14205	COG0765	amino acid transport
AUL54_14210	COG1126	abc transporter atp-binding protein
AUL54_14215	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AUL54_14220	COG0695	Has a glutathione-disulfide oxidoreductase activity in the presence of NADPH and glutathione reductase. Reduces low molecular weight disulfides and proteins
AUL54_14225	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
AUL54_14240	COG2814	Major facilitator Superfamily
AUL54_14255	COG0673	inositol 2-dehydrogenase activity
AUL54_14260	COG1937	Protein conserved in bacteria
AUL54_14265	COG2608	mercury ion transmembrane transporter activity
AUL54_14270	COG2217	Heavy metal translocating P-type atpase
AUL54_14275	COG2217	Heavy metal translocating P-type atpase
AUL54_14280	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
AUL54_14285	COG1495	Required for disulfide bond formation in some periplasmic proteins. Acts by oxidizing the DsbA protein
AUL54_14295	COG2860	membrane
AUL54_14300	COG3973	AAA domain
AUL54_14305	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
AUL54_14325	COG0656	L-ascorbic acid biosynthetic process
AUL54_14330	COG0842	Transport permease protein
AUL54_14340	COG1131	(ABC) transporter
AUL54_14345	COG3850	Histidine kinase
AUL54_14350	COG2197	response regulator
AUL54_14355	COG4149	molybdate abc transporter
AUL54_14360	COG0725	ABC transporter, periplasmic molybdate-binding protein
AUL54_14365	COG1910	domain protein
AUL54_14370	COG1368	sulfuric ester hydrolase activity
AUL54_14375	COG1988	membrane-bound metal-dependent
AUL54_14385	COG0531	amino acid
AUL54_14390	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
AUL54_14395	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
AUL54_14400	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AUL54_14405	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AUL54_14410	COG1120	ATPase activity
AUL54_14420	COG2140	Oxalate decarboxylase
AUL54_14425	COG1191	sigma factor activity
AUL54_14435	COG0745	RESPONSE REGULATOR receiver
AUL54_14440	COG2205	protein histidine kinase activity
AUL54_14445	COG3386	PFAM SMP-30 Gluconolaconase
AUL54_14450	COG1028	Short-chain dehydrogenase reductase Sdr
AUL54_14455	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
AUL54_14460	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
AUL54_14465	COG1120	ATPase activity
AUL54_14470	COG2096	Adenosyltransferase
AUL54_14475	COG2814	Major facilitator Superfamily
AUL54_14480	COG4758	membrane
AUL54_14485	COG1842	Phage shock protein A
AUL54_14490	COG3595	metallopeptidase activity
AUL54_14495	COG4758	membrane
AUL54_14500	COG4585	Histidine kinase
AUL54_14505	COG2197	response regulator
AUL54_14515	COG0814	amino acid
AUL54_14520	COG0697	spore germination
AUL54_14530	COG0114	fumarate hydratase activity
AUL54_14535	COG1309	transcriptional regulator
AUL54_14540	COG2770	Histidine kinase
AUL54_14540	COG2205	protein histidine kinase activity
AUL54_14545	COG0745	RESPONSE REGULATOR receiver
AUL54_14550	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
AUL54_14555	COG0783	Belongs to the Dps family
AUL54_14560	COG1028	Short-chain dehydrogenase reductase Sdr
AUL54_14575	COG1120	ATPase activity
AUL54_14595	COG1942	4-Oxalocrotonate Tautomerase
AUL54_14600	COG0477	Major facilitator Superfamily
AUL54_14605	COG1846	Transcriptional regulator
AUL54_14610	COG5577	PFAM Coat F domain
AUL54_14630	COG1024	Enoyl-CoA hydratase
AUL54_14630	COG1250	3-hydroxyacyl-CoA dehydrogenase
AUL54_14635	COG0183	Belongs to the thiolase family
AUL54_14640	COG1960	acyl-CoA dehydrogenase activity
AUL54_14645	COG1393	Belongs to the ArsC family
AUL54_14660	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
AUL54_14665	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AUL54_14675	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
AUL54_14680	COG2011	ABC-type metal ion transport system permease component
AUL54_14685	COG1464	Belongs to the NlpA lipoprotein family
AUL54_14690	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
AUL54_14695	COG0396	ATPase activity
AUL54_14700	COG0719	Fe-S assembly protein
AUL54_14705	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
AUL54_14710	COG0822	iron-sulfur transferase activity
AUL54_14715	COG0719	Fe-S assembly protein
AUL54_14755	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AUL54_14770	COG2323	membrane
AUL54_14775	COG5444	nuclease activity
AUL54_14800	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
AUL54_14805	COG0322	excinuclease ABC activity
AUL54_14830	COG0789	Transcriptional regulator
AUL54_14835	COG2222	sugar isomerase
AUL54_14840	COG1653	transport
AUL54_14845	COG1175	transmembrane transport
AUL54_14850	COG0395	ABC-type sugar transport system, permease component
AUL54_14855	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
AUL54_14860	COG2188	Transcriptional regulator
AUL54_14865	COG3842	ATPase activity
AUL54_14870	COG1116	anion transmembrane transporter activity
AUL54_14875	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AUL54_14880	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AUL54_14890	COG2356	endonuclease I
AUL54_14895	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AUL54_14900	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
AUL54_14905	COG1975	Xanthine and CO dehydrogenases maturation factor, XdhC CoxF family
AUL54_14910	COG2068	MobA-Related Protein
AUL54_14920	COG1529	Aldehyde oxidase and xanthine dehydrogenase
AUL54_14925	COG2080	2 iron, 2 sulfur cluster binding
AUL54_14930	COG1794	racemase activity, acting on amino acids and derivatives
AUL54_14935	COG2351	hydroxyisourate hydrolase activity
AUL54_14940	COG3648	Uricase
AUL54_14940	COG3195	allantoin biosynthetic process
AUL54_14945	COG2233	PERMEase
AUL54_14950	COG2233	PERMEase
AUL54_14955	COG2508	Transcriptional regulator
AUL54_14960	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
AUL54_14970	COG1801	Protein of unknown function DUF72
AUL54_14975	COG0730	response to heat
AUL54_14980	COG0737	Belongs to the 5'-nucleotidase family
AUL54_14990	COG0739	heme binding
AUL54_15000	COG4470	Protein conserved in bacteria
AUL54_15005	COG2445	Protein of unknown function DUF86
AUL54_15010	COG0647	UMP catabolic process
AUL54_15015	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
AUL54_15020	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
AUL54_15025	COG0460	homoserine dehydrogenase
AUL54_15030	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
AUL54_15040	COG0823	Involved in the tonB-independent uptake of proteins
AUL54_15040	COG1506	peptidase
AUL54_15040	COG4946	Tricorn protease homolog
AUL54_15045	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
AUL54_15050	COG4837	Protein of unknown function (DUF1462)
AUL54_15055	COG1252	NADH dehydrogenase
AUL54_15065	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
AUL54_15075	COG0316	Belongs to the HesB IscA family
AUL54_15080	COG3967	Belongs to the short-chain dehydrogenases reductases (SDR) family
AUL54_15105	COG1131	(ABC) transporter
AUL54_15135	COG1252	NADH dehydrogenase
AUL54_15145	COG3584	3D domain protein
AUL54_15150	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
AUL54_15160	COG2056	Na+-H+ antiporter family
AUL54_15165	COG1268	BioY protein
AUL54_15170	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
AUL54_15175	COG2819	hydrolase of the alpha beta superfamily
AUL54_15180	COG1028	Short-chain dehydrogenase reductase Sdr
AUL54_15185	COG1169	isochorismate synthase
AUL54_15190	COG1021	2,3-dihydroxybenzoate-AMP ligase
AUL54_15195	COG3433	isochorismatase activity
AUL54_15195	COG1535	isochorismatase
AUL54_15200	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AUL54_15205	COG3251	PFAM MbtH domain protein
AUL54_15210	COG5634	Uncharacterized conserved protein (DUF2278)
AUL54_15215	COG0686	Belongs to the AlaDH PNT family
AUL54_15220	COG2508	Transcriptional regulator
AUL54_15220	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
AUL54_15225	COG4842	Belongs to the WXG100 family
AUL54_15230	COG5417	Belongs to the EsaB family
AUL54_15235	COG4499	WXG100 protein secretion system (Wss), protein YukC
AUL54_15240	COG0433	COG0433 Predicted ATPase
AUL54_15240	COG1674	ftsk spoiiie
AUL54_15245	COG1511	domain protein
AUL54_15255	COG1028	Short-chain dehydrogenase reductase Sdr
AUL54_15260	COG1418	mRNA catabolic process
AUL54_15270	COG0628	permease
AUL54_15285	COG5506	Protein of unknown function (DUF1694)
AUL54_15290	COG1335	isochorismatase
AUL54_15295	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
AUL54_15300	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
AUL54_15315	COG0142	geranyltranstransferase activity
AUL54_15325	COG4585	Histidine kinase
AUL54_15330	COG2197	response regulator
AUL54_15335	COG2050	protein possibly involved in aromatic compounds catabolism
AUL54_15340	COG1320	monovalent cation:proton antiporter activity
AUL54_15345	COG2212	antiporter activity
AUL54_15350	COG1863	multisubunit Na H antiporter MnhE subunit
AUL54_15355	COG0651	ATP synthesis coupled electron transport
AUL54_15360	COG1006	Multisubunit Na H antiporter MnhC subunit
AUL54_15365	COG2111	Na H antiporter
AUL54_15370	COG2111	Na H antiporter
AUL54_15370	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
AUL54_15400	COG4565	transcriptional regulatory protein
AUL54_15405	COG3290	protein histidine kinase activity
AUL54_15415	COG3011	Protein conserved in bacteria
AUL54_15420	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AUL54_15425	COG2814	Major facilitator Superfamily
AUL54_15430	COG5018	Exonuclease
AUL54_15440	COG2205	protein histidine kinase activity
AUL54_15445	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
AUL54_15455	COG2267	carboxylic ester hydrolase activity
AUL54_15460	COG1522	sequence-specific DNA binding
AUL54_15465	COG0436	Aminotransferase
AUL54_15470	COG1098	S1 RNA binding domain
AUL54_15475	COG2155	Conserved Protein
AUL54_15480	COG1979	alcohol dehydrogenase
AUL54_15485	COG1979	alcohol dehydrogenase
AUL54_15490	COG1335	isochorismatase
AUL54_15515	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
AUL54_15530	COG2738	Putative neutral zinc metallopeptidase
AUL54_15535	COG1253	flavin adenine dinucleotide binding
AUL54_15540	COG0366	Alpha amylase catalytic
AUL54_15545	COG0432	Pfam Uncharacterised protein family UPF0047
AUL54_15550	COG2070	2-Nitropropane dioxygenase
AUL54_15565	COG0840	transmembrane signaling receptor activity
AUL54_15570	COG0840	transmembrane signaling receptor activity
AUL54_15575	COG0840	transmembrane signaling receptor activity
AUL54_15580	COG0840	transmembrane signaling receptor activity
AUL54_15585	COG0693	protein deglycase activity
AUL54_15590	COG0673	inositol 2-dehydrogenase activity
AUL54_15595	COG0628	permease
AUL54_15620	COG0457	Tetratricopeptide repeat
AUL54_15640	COG1017	nitric oxide dioxygenase activity
AUL54_15640	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AUL54_15645	COG1705	Flagellar rod assembly protein muramidase FlgJ
AUL54_15650	COG0569	domain protein
AUL54_15660	COG1510	regulation of RNA biosynthetic process
AUL54_15670	COG1454	alcohol dehydrogenase
AUL54_15680	COG2318	DinB family
AUL54_15685	COG1585	Membrane protein implicated in regulation of membrane protease activity
AUL54_15695	COG3859	Proton-coupled thiamine transporter YuaJ
AUL54_15820	COG3476	COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog)
AUL54_15825	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
AUL54_15830	COG1169	isochorismate synthase
AUL54_15840	COG0596	Alpha beta hydrolase
AUL54_15845	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
AUL54_15855	COG4948	Mandelate Racemase Muconate Lactonizing
AUL54_15865	COG1294	oxidase, subunit
AUL54_15870	COG1271	oxidase subunit
AUL54_15880	COG0288	reversible hydration of carbon dioxide
AUL54_15905	COG0783	Belongs to the Dps family
AUL54_15910	COG4824	toxin secretion phage lysis holin
AUL54_15915	COG0494	nUDIX hydrolase
AUL54_15920	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
AUL54_15925	COG1116	anion transmembrane transporter activity
AUL54_15930	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
AUL54_15935	COG1506	peptidase
AUL54_15955	COG0367	asparagine synthase
AUL54_15960	COG1113	amino acid transport
AUL54_15965	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
AUL54_15970	COG2267	carboxylic ester hydrolase activity
AUL54_15990	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
AUL54_15995	COG1242	4 iron, 4 sulfur cluster binding
AUL54_16000	COG0477	Major facilitator Superfamily
AUL54_16015	COG1725	Transcriptional regulator
AUL54_16020	COG1131	(ABC) transporter
AUL54_16040	COG1136	(ABC) transporter
AUL54_16045	COG0577	efflux transmembrane transporter activity
AUL54_16050	COG0745	RESPONSE REGULATOR receiver
AUL54_16055	COG2205	protein histidine kinase activity
AUL54_16060	COG1136	(ABC) transporter
AUL54_16065	COG0577	efflux transmembrane transporter activity
AUL54_16070	COG5522	Integral membrane protein (intg_mem_TP0381)
AUL54_16075	COG2814	Major facilitator Superfamily
AUL54_16080	COG1366	Belongs to the anti-sigma-factor antagonist family
AUL54_16080	COG2202	Pas domain
AUL54_16095	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AUL54_16115	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
AUL54_16120	COG2081	HI0933 family
AUL54_16125	COG2244	polysaccharide biosynthetic process
AUL54_16130	COG1187	pseudouridine synthase activity
AUL54_16135	COG1349	DNA-binding transcription factor activity
AUL54_16140	COG1131	(ABC) transporter
AUL54_16145	COG4473	ABC transporter
AUL54_16150	COG2252	PERMEase
AUL54_16155	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
AUL54_16160	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
AUL54_16165	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
AUL54_16175	COG1597	lipid kinase activity
AUL54_16180	COG0510	thiamine kinase activity
AUL54_16195	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AUL54_16200	COG0281	malic enzyme
AUL54_16205	COG5584	Small secreted protein
AUL54_16210	COG1363	Peptidase, m42
AUL54_16220	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
AUL54_16230	COG2323	membrane
AUL54_16245	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AUL54_16280	COG0860	N-Acetylmuramoyl-L-alanine amidase
AUL54_16325	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AUL54_16335	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AUL54_16340	COG1674	ftsk spoiiie
AUL54_16350	COG4768	protein containing a divergent version of the methyl-accepting chemotaxis-like domain
AUL54_16355	COG4980	gas vesicle protein
AUL54_16360	COG3118	belongs to the thioredoxin family
AUL54_16365	COG1605	Chorismate mutase
AUL54_16365	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
AUL54_16370	COG1609	Transcriptional regulator
AUL54_16375	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
AUL54_16380	COG1360	Flagellar Motor Protein
AUL54_16385	COG0123	including yeast histone deacetylase and acetoin utilization protein
AUL54_16390	COG0517	IMP dehydrogenase activity
AUL54_16395	COG0454	-acetyltransferase
AUL54_16400	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AUL54_16420	COG1378	Sugar-specific transcriptional regulator TrmB
AUL54_16425	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
AUL54_16440	COG0693	protein deglycase activity
AUL54_16450	COG1018	Is involved in NO detoxification in an aerobic process, termed nitric oxide dioxygenase (NOD) reaction that utilizes O(2) and NAD(P)H to convert NO to nitrate, which protects the bacterium from various noxious nitrogen compounds. Therefore, plays a central role in the inducible response to nitrosative stress
AUL54_16450	COG1017	nitric oxide dioxygenase activity
AUL54_16475	COG4282	regulation of fungal-type cell wall biogenesis
AUL54_16480	COG1012	belongs to the aldehyde dehydrogenase family
AUL54_16490	COG2199	diguanylate cyclase activity
AUL54_16490	COG2203	Gaf domain
AUL54_16495	COG1956	GAF domain-containing protein
AUL54_16500	COG1309	transcriptional regulator
AUL54_16505	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
AUL54_16515	COG1114	Component of the transport system for branched-chain amino acids
AUL54_16520	COG1104	cysteine desulfurase activity
AUL54_16535	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
AUL54_16540	COG1574	metal-dependent hydrolase with the TIM-barrel fold
AUL54_16545	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
AUL54_16550	COG0616	signal peptide processing
AUL54_16555	COG1714	RDD family
AUL54_16565	COG3874	Sporulation protein YtfJ
AUL54_16570	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
AUL54_16575	COG0827	DNA restriction-modification system
AUL54_16585	COG0521	Mo-molybdopterin cofactor biosynthetic process
AUL54_16600	COG1028	Short-chain dehydrogenase reductase Sdr
AUL54_16610	COG4109	DRTGG domain
AUL54_16620	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
AUL54_16640	COG0587	DNA-directed DNA polymerase activity
AUL54_16645	COG0281	malic enzyme
AUL54_16665	COG0469	pyruvate kinase activity
AUL54_16670	COG3030	protein affecting phage T7 exclusion by the F plasmid
AUL54_16675	COG0628	permease
AUL54_16685	COG0372	Belongs to the citrate synthase family
AUL54_16690	COG0538	isocitrate dehydrogenase activity
AUL54_16700	COG0745	RESPONSE REGULATOR receiver
AUL54_16705	COG5002	protein histidine kinase activity
AUL54_16710	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AUL54_16710	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
AUL54_16715	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
AUL54_16720	COG1971	Probably functions as a manganese efflux pump
AUL54_16725	COG0237	dephospho-CoA kinase activity
AUL54_16730	COG0656	L-ascorbic acid biosynthetic process
AUL54_16735	COG2814	Major facilitator Superfamily
AUL54_16740	COG1733	regulation of RNA biosynthetic process
AUL54_16745	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
AUL54_16760	COG3611	Membrane attachment protein
AUL54_16765	COG1484	DNA-dependent DNA replication
AUL54_16770	COG0398	Pfam SNARE associated Golgi protein
AUL54_16790	COG3275	phosphorelay sensor kinase activity
AUL54_16795	COG3279	Response regulator of the LytR AlgR family
AUL54_16800	COG1380	Effector of murein hydrolase LrgA
AUL54_16805	COG1346	cytolysis
AUL54_16810	COG0290	IF-3 binds to the 30S ribosomal subunit and shifts the equilibrum between 70S ribosomes and their 50S and 30S subunits in favor of the free subunits, thus enhancing the availability of 30S subunits on which protein synthesis initiation begins
AUL54_16825	COG3326	Membrane
AUL54_16835	COG1363	Peptidase, m42
AUL54_16840	COG3507	Belongs to the glycosyl hydrolase 43 family
AUL54_16845	COG2160	L-arabinose isomerase activity
AUL54_16850	COG1069	ribulokinase activity
AUL54_16855	COG0235	Class ii aldolase
AUL54_16860	COG0647	UMP catabolic process
AUL54_16870	COG1653	transport
AUL54_16875	COG1175	transmembrane transport
AUL54_16880	COG0395	ABC-type sugar transport system, permease component
AUL54_16885	COG3534	alpha-L-arabinofuranosidase
AUL54_16890	COG1966	Carbon starvation protein
AUL54_16895	COG0247	lactate metabolic process
AUL54_16900	COG0277	FAD linked oxidase domain protein
AUL54_16905	COG3835	regulator
AUL54_16915	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
AUL54_16920	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
AUL54_16925	COG0072	phenylalanine-tRNA ligase activity
AUL54_16925	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
AUL54_16940	COG1286	toxin biosynthetic process
AUL54_16945	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
AUL54_16945	COG1796	DNA polymerase
AUL54_16955	COG3766	membrane
AUL54_16965	COG0318	PFAM AMP-dependent synthetase and ligase
AUL54_16970	COG1309	transcriptional regulator
AUL54_16975	COG1024	Enoyl-CoA hydratase
AUL54_16980	COG2086	electron transfer activity
AUL54_16985	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
AUL54_16990	COG3534	alpha-L-arabinofuranosidase
AUL54_16995	COG3118	belongs to the thioredoxin family
AUL54_17005	COG0527	aspartate kinase activity
AUL54_17010	COG1719	4-vinyl reductase, 4VR
AUL54_17015	COG2009	succinate dehydrogenase
AUL54_17020	COG1053	succinate dehydrogenase
AUL54_17025	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
AUL54_17030	COG0824	Thioesterase
AUL54_17035	COG2197	response regulator
AUL54_17040	COG1846	Transcriptional regulator
AUL54_17050	COG5401	PFAM Sporulation and spore germination
AUL54_17060	COG0127	Pyrophosphatase that catalyzes the hydrolysis of nucleoside triphosphates to their monophosphate derivatives, with a high preference for the non-canonical purine nucleotides XTP (xanthosine triphosphate), dITP (deoxyinosine triphosphate) and ITP. Seems to function as a house-cleaning enzyme that removes non-canonical purine nucleotides from the nucleotide pool, thus preventing their incorporation into DNA RNA and avoiding chromosomal lesions
AUL54_17065	COG0622	Phosphoesterase
AUL54_17085	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
AUL54_17130	COG0028	Belongs to the TPP enzyme family
AUL54_17135	COG0440	acetolactate synthase activity
AUL54_17150	COG0473	3-isopropylmalate dehydrogenase activity
AUL54_17165	COG1477	protein flavinylation
AUL54_17165	COG0457	Tetratricopeptide repeat
AUL54_17180	COG0470	DNA polymerase III
AUL54_17180	COG1067	ATP-dependent peptidase activity
AUL54_17185	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
AUL54_17205	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
AUL54_17215	COG1587	Uroporphyrinogen-III synthase
AUL54_17220	COG0113	porphobilinogen synthase activity
AUL54_17230	COG1388	LysM domain
AUL54_17235	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
AUL54_17245	COG0525	valine-tRNA ligase activity
AUL54_17250	COG0285	dihydrofolate synthase activity
AUL54_17255	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
AUL54_17275	COG1077	Cell shape determining protein MreB Mrl
AUL54_17280	COG1792	Involved in formation and maintenance of cell shape
AUL54_17285	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
AUL54_17295	COG2894	cell division
AUL54_17300	COG0739	heme binding
AUL54_17305	COG1994	Peptidase M50
AUL54_17315	COG2868	ribosomal protein
AUL54_17320	COG0211	Belongs to the bacterial ribosomal protein bL27 family
AUL54_17325	COG3290	protein histidine kinase activity
AUL54_17340	COG0077	Prephenate dehydratase
AUL54_17345	COG1827	regulation of RNA biosynthetic process
AUL54_17350	COG1104	cysteine desulfurase activity
AUL54_17355	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
AUL54_17360	COG0157	Belongs to the NadC ModD family
AUL54_17370	COG1388	LysM domain
AUL54_17410	COG1862	Preprotein translocase
AUL54_17420	COG2323	membrane
AUL54_17435	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
AUL54_17435	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
AUL54_17440	COG0490	domain, Protein
AUL54_17445	COG5416	Lipopolysaccharide assembly protein A domain
AUL54_17450	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
AUL54_17450	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
AUL54_17460	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
AUL54_17465	COG1490	D-aminoacyl-tRNA deacylase activity
AUL54_17470	COG4991	sh3 domain protein
AUL54_17470	COG3103	Sh3 type 3 domain protein
AUL54_17470	COG0860	N-Acetylmuramoyl-L-alanine amidase
AUL54_17490	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
AUL54_17495	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
AUL54_17500	COG1959	2 iron, 2 sulfur cluster binding
AUL54_17505	COG1104	cysteine desulfurase activity
AUL54_17515	COG0457	Tetratricopeptide repeat
AUL54_17520	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
AUL54_17525	COG3881	PFAM PRC-barrel domain
AUL54_17535	COG0765	amino acid transport
AUL54_17540	COG0765	amino acid transport
AUL54_17545	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AUL54_17550	COG1126	abc transporter atp-binding protein
AUL54_17555	COG0628	permease
AUL54_17565	COG4472	Bacterial protein of unknown function (DUF965)
AUL54_17580	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
AUL54_17610	COG0768	penicillin binding
AUL54_17635	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
AUL54_17640	COG0626	cystathionine gamma-synthase activity
AUL54_17650	COG2427	Protein of unknown function (DUF1641)
AUL54_17655	COG3383	formate dehydrogenase (NAD+) activity
AUL54_17660	COG5609	conserved protein (DUF2294)
AUL54_17665	COG2116	formate transmembrane transporter activity
AUL54_17670	COG2226	methyltransferase
AUL54_17675	COG1309	transcriptional regulator
AUL54_17680	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
AUL54_17680	COG2124	cytochrome p450
AUL54_17685	COG2814	Major facilitator Superfamily
AUL54_17690	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
AUL54_17705	COG0561	phosphatase activity
AUL54_17720	COG2318	DinB family
AUL54_17730	COG2814	Major facilitator Superfamily
AUL54_17740	COG0563	adenylate kinase activity
AUL54_17745	COG2207	Transcriptional regulator
AUL54_17745	COG3708	Transcriptional regulator
AUL54_17790	COG5484	DNA packaging
AUL54_17800	COG0656	L-ascorbic acid biosynthetic process
AUL54_17820	COG1733	regulation of RNA biosynthetic process
AUL54_17840	COG0398	Pfam SNARE associated Golgi protein
AUL54_17845	COG3409	Peptidoglycan-binding domain 1 protein
AUL54_17845	COG5632	N-Acetylmuramoyl-L-alanine amidase
AUL54_17850	COG5632	N-Acetylmuramoyl-L-alanine amidase
AUL54_17850	COG1388	LysM domain
AUL54_17850	COG3409	Peptidoglycan-binding domain 1 protein
AUL54_17855	COG0726	polysaccharide deacetylase
AUL54_17860	COG2755	lipolytic protein G-D-S-L family
AUL54_17870	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
AUL54_17875	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
AUL54_17880	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
AUL54_17885	COG1534	Rna-binding protein
AUL54_17895	COG1713	HD superfamily hydrolase involved in NAD metabolism
AUL54_17900	COG0799	negative regulation of ribosome biogenesis
AUL54_17905	COG2226	methyltransferase
AUL54_17910	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
AUL54_17915	COG1596	polysaccharide export
AUL54_17915	COG1555	photosystem II stabilization
AUL54_17920	COG2131	deaminase
AUL54_17925	COG0658	competence protein
AUL54_17925	COG2333	competence protein COMEC
AUL54_17930	COG1466	dna polymerase III delta subunit
AUL54_17945	COG0860	N-Acetylmuramoyl-L-alanine amidase
AUL54_17960	COG0635	Involved in the biosynthesis of porphyrin-containing compound
AUL54_17990	COG1385	rRNA (uridine-N3-)-methyltransferase activity
AUL54_17995	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
AUL54_18000	COG1283	sodium-dependent phosphate transmembrane transporter activity
AUL54_18005	COG0828	Belongs to the bacterial ribosomal protein bS21 family
AUL54_18010	COG1610	YqeY-like protein
AUL54_18015	COG1030	water channel activity
AUL54_18020	COG4864	UPF0365 protein
AUL54_18035	COG0561	phosphatase activity
AUL54_18040	COG1702	phosphate starvation-inducible protein PhoH
AUL54_18045	COG1480	7TM receptor with intracellular HD hydrolase
AUL54_18055	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
AUL54_18060	COG0295	cytidine deaminase activity
AUL54_18065	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
AUL54_18080	COG0751	glycine-tRNA ligase activity
AUL54_18085	COG0517	IMP dehydrogenase activity
AUL54_18100	COG0358	DNA primase activity
AUL54_18105	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
AUL54_18110	COG2010	Cytochrome c
AUL54_18115	COG2384	SAM-dependent methyltransferase
AUL54_18120	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
AUL54_18135	COG0513	Belongs to the DEAD box helicase family
AUL54_18150	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
AUL54_18155	COG0735	belongs to the Fur family
AUL54_18160	COG5663	Belongs to the 5'(3')-deoxyribonucleotidase family
AUL54_18165	COG4709	membrane
AUL54_18175	COG1388	LysM domain
AUL54_18180	COG5521	maltodextrose utilization protein MalA
AUL54_18185	COG2839	Protein conserved in bacteria
AUL54_18190	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
AUL54_18195	COG0477	Major facilitator Superfamily
AUL54_18205	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
AUL54_18210	COG0573	inorganic phosphate transmembrane transporter activity
AUL54_18215	COG0581	inorganic phosphate transmembrane transporter activity
AUL54_18220	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
AUL54_18225	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
AUL54_18230	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
AUL54_18240	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
AUL54_18245	COG1757	Na H antiporter
AUL54_18250	COG4483	Protein conserved in bacteria
AUL54_18255	COG1940	carbohydrate kinase activity
AUL54_18260	COG2866	Carboxypeptidase
AUL54_18270	COG0011	TIGRFAM Protein of
AUL54_18275	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AUL54_18285	COG1393	Belongs to the ArsC family
AUL54_18295	COG1366	Belongs to the anti-sigma-factor antagonist family
AUL54_18300	COG1253	flavin adenine dinucleotide binding
AUL54_18305	COG0598	Magnesium transport protein CorA
AUL54_18310	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
AUL54_18315	COG1459	type II secretion system
AUL54_18320	COG4537	Required for transformation and DNA binding
AUL54_18325	COG4970	Tfp pilus assembly protein FimT
AUL54_18335	COG4940	Competence protein ComGF
AUL54_18360	COG0681	Belongs to the peptidase S26 family
AUL54_18370	COG1396	sequence-specific DNA binding
AUL54_18385	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
AUL54_18405	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
AUL54_18420	COG1752	Esterase of the alpha-beta hydrolase superfamily
AUL54_18430	COG3872	metal-dependent enzyme
AUL54_18440	COG0006	proline dipeptidase activity
AUL54_18455	COG3854	ATPases associated with a variety of cellular activities
AUL54_18495	COG0511	ligase activity, forming carbon-carbon bonds
AUL54_18500	COG0439	Biotin carboxylase
AUL54_18505	COG1302	Protein conserved in bacteria
AUL54_18520	COG1570	exodeoxyribonuclease VII activity
AUL54_18530	COG0142	geranyltranstransferase activity
AUL54_18540	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
AUL54_18550	COG0497	DNA recombination
AUL54_18555	COG0750	zinc metalloprotease
AUL54_18560	COG0745	RESPONSE REGULATOR receiver
AUL54_18565	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
AUL54_18580	COG1902	pentaerythritol trinitrate reductase activity
AUL54_18605	COG0860	N-Acetylmuramoyl-L-alanine amidase
AUL54_18610	COG0584	glycerophosphoryl diester phosphodiesterase
AUL54_18615	COG0183	Belongs to the thiolase family
AUL54_18620	COG1250	3-hydroxyacyl-CoA dehydrogenase
AUL54_18625	COG1960	acyl-CoA dehydrogenase activity
AUL54_18630	COG0372	Belongs to the citrate synthase family
AUL54_18635	COG2079	MmgE PrpD family protein
AUL54_18640	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
AUL54_18650	COG3290	protein histidine kinase activity
AUL54_18650	COG3829	transcription factor binding
AUL54_18655	COG0280	phosphate acetyltransferase
AUL54_18660	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
AUL54_18665	COG3426	butyrate kinase activity
AUL54_18670	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
AUL54_18675	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
AUL54_18680	COG0022	dehydrogenase e1 component
AUL54_18685	COG0508	dehydrogenase complex catalyzes the overall conversion of
AUL54_18690	COG1597	lipid kinase activity
AUL54_18700	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
AUL54_18705	COG0765	amino acid transport
AUL54_18710	COG1126	abc transporter atp-binding protein
AUL54_18715	COG4129	membrane
AUL54_18720	COG1376	ErfK ybiS ycfS ynhG family protein
AUL54_18725	COG0346	lactoylglutathione lyase activity
AUL54_18730	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
AUL54_18735	COG2195	Cleaves the N-terminal amino acid of tripeptides
AUL54_18740	COG0706	membrane insertase activity
AUL54_18755	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
AUL54_18760	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
AUL54_18770	COG0596	Alpha beta hydrolase
AUL54_18780	COG0250	Participates in transcription elongation, termination and antitermination
AUL54_18785	COG2070	2-Nitropropane dioxygenase
AUL54_18785	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
AUL54_18800	COG0318	PFAM AMP-dependent synthetase and ligase
AUL54_18805	COG1028	Short-chain dehydrogenase reductase Sdr
AUL54_18810	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AUL54_18810	COG1028	Short-chain dehydrogenase reductase Sdr
AUL54_18810	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AUL54_18810	COG3321	synthase
AUL54_18810	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AUL54_18815	COG1028	Short-chain dehydrogenase reductase Sdr
AUL54_18815	COG3321	synthase
AUL54_18815	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AUL54_18815	COG0318	PFAM AMP-dependent synthetase and ligase
AUL54_18815	COG0300	oxidoreductase activity
AUL54_18820	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AUL54_18820	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AUL54_18820	COG1028	Short-chain dehydrogenase reductase Sdr
AUL54_18820	COG3321	synthase
AUL54_18820	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AUL54_18825	COG1028	Short-chain dehydrogenase reductase Sdr
AUL54_18825	COG0300	oxidoreductase activity
AUL54_18825	COG0318	PFAM AMP-dependent synthetase and ligase
AUL54_18825	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AUL54_18825	COG3321	synthase
AUL54_18830	COG0318	PFAM AMP-dependent synthetase and ligase
AUL54_18830	COG0300	oxidoreductase activity
AUL54_18830	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AUL54_18830	COG1028	Short-chain dehydrogenase reductase Sdr
AUL54_18830	COG3321	synthase
AUL54_18835	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AUL54_18835	COG1028	Short-chain dehydrogenase reductase Sdr
AUL54_18835	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AUL54_18835	COG3321	synthase
AUL54_18835	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AUL54_18840	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
AUL54_18840	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
AUL54_18840	COG3321	synthase
AUL54_18840	COG1028	Short-chain dehydrogenase reductase Sdr
AUL54_18840	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
AUL54_18845	COG2124	cytochrome p450
AUL54_18850	COG3425	synthase
AUL54_18855	COG1024	Enoyl-CoA hydratase
AUL54_18860	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
AUL54_18865	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
AUL54_18870	COG0300	oxidoreductase activity
AUL54_18875	COG3048	D-serine ammonia-lyase activity
AUL54_18885	COG0346	lactoylglutathione lyase activity
AUL54_18895	COG0628	permease
AUL54_18910	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
AUL54_18915	COG0456	acetyltransferase
AUL54_18920	COG2329	Antibiotic biosynthesis monooxygenase
AUL54_18925	COG0456	acetyltransferase
AUL54_18925	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
AUL54_18930	COG4918	Iron-sulphur cluster biosynthesis
AUL54_18940	COG1073	alpha beta
AUL54_18950	COG0667	Aldo Keto reductase
AUL54_18960	COG0494	nUDIX hydrolase
AUL54_18965	COG1379	DNA repair
AUL54_18970	COG1396	sequence-specific DNA binding
AUL54_18975	COG0252	asparaginase activity
AUL54_18980	COG1027	Aspartate ammonia-lyase
AUL54_18985	COG1757	Na H antiporter
AUL54_18990	COG0281	malic enzyme
AUL54_19005	COG1300	Membrane
AUL54_19010	COG0735	belongs to the Fur family
AUL54_19020	COG4974	Belongs to the 'phage' integrase family
AUL54_19025	COG1015	Phosphotransfer between the C1 and C5 carbon atoms of pentose
AUL54_19030	COG0005	The purine nucleoside phosphorylases catalyze the phosphorolytic breakdown of the N-glycosidic bond in the beta- (deoxy)ribonucleoside molecules, with the formation of the corresponding free purine bases and pentose-1-phosphate
AUL54_19035	COG1686	Belongs to the peptidase S11 family
AUL54_19040	COG1366	Belongs to the anti-sigma-factor antagonist family
AUL54_19050	COG1191	sigma factor activity
AUL54_19070	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
AUL54_19085	COG0697	spore germination
AUL54_19090	COG0019	diaminopimelate decarboxylase activity
AUL54_19095	COG4086	secreted protein
AUL54_19100	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
AUL54_19110	COG0681	Belongs to the peptidase S26 family
AUL54_19120	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AUL54_19120	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
AUL54_19125	COG0307	riboflavin synthase, alpha
AUL54_19140	COG0456	acetyltransferase
AUL54_19145	COG1547	Domain of unknown function (DUF309)
AUL54_19165	COG1686	Belongs to the peptidase S11 family
AUL54_19170	COG2715	membrane protein required for spore maturation
AUL54_19175	COG0700	Nucleoside recognition
AUL54_19180	COG1187	pseudouridine synthase activity
AUL54_19185	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
AUL54_19190	COG1333	cytochrome c biogenesis protein
AUL54_19195	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
AUL54_19200	COG0745	RESPONSE REGULATOR receiver
AUL54_19205	COG5002	protein histidine kinase activity
AUL54_19210	COG1595	DNA-templated transcription, initiation
AUL54_19220	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
AUL54_19225	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
AUL54_19230	COG1141	Ferredoxin
AUL54_19235	COG4955	Helix-turn-helix domain
AUL54_19240	COG0514	ATP-dependent DNA helicase (RecQ)
AUL54_19245	COG1266	CAAX protease self-immunity
AUL54_19250	COG1388	LysM domain
AUL54_19260	COG1408	metallophosphoesterase
AUL54_19265	COG4862	establishment of competence for transformation
AUL54_19270	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
AUL54_19275	COG0492	ferredoxin-NADP+ reductase activity
AUL54_19280	COG2339	peptidase activity
AUL54_19285	COG3409	Peptidoglycan-binding domain 1 protein
AUL54_19285	COG3773	Cell wall hydrolase
AUL54_19290	COG2959	enzyme of heme biosynthesis
AUL54_19295	COG5581	Acts as a flagellar brake, regulating swimming and swarming in a bis-(3'-5') cyclic diguanylic acid (c-di-GMP)- dependent manner. Binds 1 c-di-GMP dimer per subunit. Increasing levels of c-di-GMP lead to decreased motility
AUL54_19305	COG0539	negative regulation of cytoplasmic translation
AUL54_19340	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
AUL54_19345	COG0776	regulation of translation
AUL54_19360	COG0142	geranyltranstransferase activity
AUL54_19370	COG0142	geranyltranstransferase activity
AUL54_19375	COG0105	UTP biosynthetic process
AUL54_19380	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
AUL54_19395	COG4401	Chorismate mutase type I
AUL54_19400	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
AUL54_19435	COG0287	Prephenate dehydrogenase
AUL54_19445	COG0457	Tetratricopeptide repeat
AUL54_19460	COG0723	plastoquinol--plastocyanin reductase activity
AUL54_19465	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
AUL54_19470	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
AUL54_19470	COG2010	Cytochrome c
AUL54_19475	COG4347	Protein of unknown function (DUF1405)
AUL54_19485	COG2140	Oxalate decarboxylase
AUL54_19490	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
AUL54_19495	COG1694	Mazg nucleotide pyrophosphohydrolase
AUL54_19510	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
AUL54_19515	COG0438	transferase activity, transferring glycosyl groups
AUL54_19525	COG1654	Acts both as a biotin-- acetyl-CoA-carboxylase ligase and a biotin-operon repressor. In the presence of ATP, BirA activates biotin to form the BirA-biotinyl-5'-adenylate (BirA-bio- 5'-AMP or holoBirA) complex. HoloBirA can either transfer the biotinyl moiety to the biotin carboxyl carrier protein (BCCP) subunit of acetyl-CoA carboxylase, or bind to the biotin operator site and inhibit transcription of the operon
AUL54_19525	COG0340	biotin-[acetyl-CoA-carboxylase] ligase activity
AUL54_19545	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
AUL54_19545	COG1199	ATP-dependent helicase activity
AUL54_19550	COG5353	protein conserved in bacteria
AUL54_19555	COG0436	Aminotransferase
AUL54_19565	COG3935	DnaD domain protein
AUL54_19570	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
AUL54_19580	COG4499	WXG100 protein secretion system (Wss), protein YukC
AUL54_19580	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
AUL54_19620	COG0071	Belongs to the small heat shock protein (HSP20) family
AUL54_19625	COG2190	(PTS) system
AUL54_19630	COG1111	helicase
AUL54_19630	COG1205	dead DEAH box helicase
AUL54_19635	COG3359	exonuclease
AUL54_19655	COG0116	Belongs to the methyltransferase superfamily
AUL54_19665	COG1199	ATP-dependent helicase activity
AUL54_19670	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
AUL54_19680	COG2233	PERMEase
AUL54_19690	COG1525	nuclease
AUL54_19695	COG4282	regulation of fungal-type cell wall biogenesis
AUL54_19705	COG5444	nuclease activity
AUL54_19740	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
AUL54_19745	COG0457	Tetratricopeptide repeat
AUL54_19770	COG3409	Peptidoglycan-binding domain 1 protein
AUL54_19770	COG5632	N-Acetylmuramoyl-L-alanine amidase
AUL54_19775	COG5434	Belongs to the glycosyl hydrolase 28 family
AUL54_19795	COG0739	heme binding
AUL54_19795	COG1196	nuclear chromosome segregation
AUL54_19795	COG0741	lytic transglycosylase activity
AUL54_19910	COG4373	Mu-like prophage FluMu protein gp28
AUL54_19950	COG0776	regulation of translation
AUL54_20055	COG3655	Transcriptional regulator
AUL54_20165	COG3655	Transcriptional regulator
AUL54_20215	COG4474	Belongs to the UPF0398 family
AUL54_20235	COG1793	dna ligase
AUL54_20240	COG2135	peptidase activity
AUL54_20260	COG4195	phage-related replication protein
AUL54_20265	COG3420	alginic acid biosynthetic process
AUL54_20265	COG5434	Belongs to the glycosyl hydrolase 28 family
AUL54_20290	COG2887	Belongs to the helicase family. UvrD subfamily
AUL54_20300	COG0305	Participates in initiation and elongation during chromosome replication
AUL54_20305	COG0358	DNA primase activity
AUL54_20310	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity