AUL54_00015	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AUL54_00015	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AUL54_00015	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AUL54_00015	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AUL54_00015	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AUL54_00015	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AUL54_00025	PWY-5381	pyridine nucleotide cycling (plants)
AUL54_00110	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AUL54_00110	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AUL54_00110	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AUL54_00110	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AUL54_00110	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AUL54_00110	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AUL54_00110	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AUL54_00110	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AUL54_00130	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AUL54_00130	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AUL54_00130	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AUL54_00130	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AUL54_00130	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AUL54_00130	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AUL54_00130	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AUL54_00130	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AUL54_00165	PWY-3841	folate transformations II
AUL54_00165	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AUL54_00165	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AUL54_00165	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AUL54_00165	PWY-7199	pyrimidine deoxyribonucleosides salvage
AUL54_00165	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AUL54_00170	PWY-3841	folate transformations II
AUL54_00170	PWY-6614	tetrahydrofolate biosynthesis
AUL54_00355	PWY-7817	AUL54_00355
AUL54_00380	PWY-5101	L-isoleucine biosynthesis II
AUL54_00380	PWY-5103	L-isoleucine biosynthesis III
AUL54_00380	PWY-5104	L-isoleucine biosynthesis IV
AUL54_00380	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AUL54_00400	PWY-3841	folate transformations II
AUL54_00400	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AUL54_00400	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AUL54_00400	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AUL54_00400	PWY-7199	pyrimidine deoxyribonucleosides salvage
AUL54_00400	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AUL54_00405	PWY-3841	folate transformations II
AUL54_00405	PWY-6614	tetrahydrofolate biosynthesis
AUL54_00580	PWY-4702	phytate degradation I
AUL54_00675	PWY-4202	arsenate detoxification I (glutaredoxin)
AUL54_00675	PWY-5532	adenosine nucleotides degradation IV
AUL54_00675	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AUL54_00675	PWY-6608	guanosine nucleotides degradation III
AUL54_00675	PWY-6609	adenine and adenosine salvage III
AUL54_00675	PWY-6611	adenine and adenosine salvage V
AUL54_00675	PWY-6620	guanine and guanosine salvage
AUL54_00675	PWY-6627	salinosporamide A biosynthesis
AUL54_00675	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
AUL54_00675	PWY-7179	purine deoxyribonucleosides degradation I
AUL54_00675	PWY-7179-1	purine deoxyribonucleosides degradation
AUL54_00800	PWY-6854	ethylene biosynthesis III (microbes)
AUL54_00815	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AUL54_00820	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AUL54_00840	PWY-6854	ethylene biosynthesis III (microbes)
AUL54_01260	PWY-3341	L-proline biosynthesis III
AUL54_01260	PWY-4981	L-proline biosynthesis II (from arginine)
AUL54_01260	PWY-6344	L-ornithine degradation II (Stickland reaction)
AUL54_01265	PWY-3341	L-proline biosynthesis III
AUL54_01265	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AUL54_01315	PWY-4041	&gamma;-glutamyl cycle
AUL54_01315	PWY-4061	glutathione-mediated detoxification I
AUL54_01315	PWY-5826	hypoglycin biosynthesis
AUL54_01315	PWY-6842	glutathione-mediated detoxification II
AUL54_01315	PWY-7112	4-hydroxy-2-nonenal detoxification
AUL54_01315	PWY-7559	glutathione degradation (DUG pathway - yeast)
AUL54_01350	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AUL54_01350	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AUL54_01420	PWY-4381	fatty acid biosynthesis initiation I
AUL54_01420	PWY-5743	3-hydroxypropanoate cycle
AUL54_01420	PWY-5744	glyoxylate assimilation
AUL54_01420	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AUL54_01420	PWY-6722	candicidin biosynthesis
AUL54_01430	PWY-3801	sucrose degradation II (sucrose synthase)
AUL54_01430	PWY-6527	stachyose degradation
AUL54_01430	PWY-7238	sucrose biosynthesis II
AUL54_01430	PWY-7343	UDP-glucose biosynthesis
AUL54_01430	PWY-7817	AUL54_01430
AUL54_01440	PWY-6578	8-amino-7-oxononanoate biosynthesis III
AUL54_01450	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AUL54_01450	PWY-6578	8-amino-7-oxononanoate biosynthesis III
AUL54_01450	PWY-7147	8-amino-7-oxononanoate biosynthesis II
AUL54_01455	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
AUL54_01460	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
AUL54_01490	PWY-4381	fatty acid biosynthesis initiation I
AUL54_01490	PWY-6799	fatty acid biosynthesis (plant mitochondria)
AUL54_01490	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AUL54_01665	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AUL54_01665	PWY-5723	Rubisco shunt
AUL54_01665	PWY-6891	thiazole biosynthesis II (Bacillus)
AUL54_01665	PWY-6892	thiazole biosynthesis I (E. coli)
AUL54_01665	PWY-6901	superpathway of glucose and xylose degradation
AUL54_01665	PWY-7560	methylerythritol phosphate pathway II
AUL54_01810	PWY-4261	glycerol degradation I
AUL54_01860	PWY-381	nitrate reduction II (assimilatory)
AUL54_01860	PWY-5675	nitrate reduction V (assimilatory)
AUL54_01860	PWY-6549	L-glutamine biosynthesis III
AUL54_01860	PWY-6963	ammonia assimilation cycle I
AUL54_01860	PWY-6964	ammonia assimilation cycle II
AUL54_01900	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AUL54_01900	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AUL54_01900	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AUL54_01900	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AUL54_01900	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AUL54_01900	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AUL54_01900	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AUL54_01900	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AUL54_01905	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AUL54_01905	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AUL54_01905	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AUL54_01905	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AUL54_01905	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AUL54_01905	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AUL54_01905	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AUL54_01905	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AUL54_01930	PWY-2781	<i>cis</i>-zeatin biosynthesis
AUL54_02030	PWY-6174	mevalonate pathway II (archaea)
AUL54_02030	PWY-7391	isoprene biosynthesis II (engineered)
AUL54_02030	PWY-7524	mevalonate pathway III (archaea)
AUL54_02030	PWY-7571	ferrichrome A biosynthesis
AUL54_02030	PWY-922	mevalonate pathway I
AUL54_02040	PWY-4381	fatty acid biosynthesis initiation I
AUL54_02040	PWY-6799	fatty acid biosynthesis (plant mitochondria)
AUL54_02040	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AUL54_02050	PWY-4381	fatty acid biosynthesis initiation I
AUL54_02050	PWY-6799	fatty acid biosynthesis (plant mitochondria)
AUL54_02050	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AUL54_02120	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AUL54_02120	PWY-6578	8-amino-7-oxononanoate biosynthesis III
AUL54_02120	PWY-7147	8-amino-7-oxononanoate biosynthesis II
AUL54_02125	PWY-7378	aminopropanol phosphate biosynthesis II
AUL54_02160	PWY-5269	cardiolipin biosynthesis II
AUL54_02160	PWY-5668	cardiolipin biosynthesis I
AUL54_02160	PWY-7817	AUL54_02160
AUL54_02235	PWY-2941	L-lysine biosynthesis II
AUL54_02235	PWY-2942	L-lysine biosynthesis III
AUL54_02235	PWY-5097	L-lysine biosynthesis VI
AUL54_02240	PWY-2941	L-lysine biosynthesis II
AUL54_02240	PWY-2942	L-lysine biosynthesis III
AUL54_02240	PWY-5097	L-lysine biosynthesis VI
AUL54_02240	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
AUL54_02240	PWY-6559	spermidine biosynthesis II
AUL54_02240	PWY-6562	norspermidine biosynthesis
AUL54_02240	PWY-7153	grixazone biosynthesis
AUL54_02240	PWY-7977	AUL54_02240
AUL54_02245	PWY-2941	L-lysine biosynthesis II
AUL54_02245	PWY-2942	L-lysine biosynthesis III
AUL54_02245	PWY-5097	L-lysine biosynthesis VI
AUL54_02245	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AUL54_02245	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
AUL54_02245	PWY-6559	spermidine biosynthesis II
AUL54_02245	PWY-6562	norspermidine biosynthesis
AUL54_02245	PWY-7153	grixazone biosynthesis
AUL54_02245	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AUL54_02245	PWY-7977	AUL54_02245
AUL54_02285	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
AUL54_02285	PWY-6167	flavin biosynthesis II (archaea)
AUL54_02285	PWY-6168	flavin biosynthesis III (fungi)
AUL54_02285	PWY-7863	AUL54_02285
AUL54_02345	PWY-7560	methylerythritol phosphate pathway II
AUL54_02350	PWY-5667	CDP-diacylglycerol biosynthesis I
AUL54_02350	PWY-5981	CDP-diacylglycerol biosynthesis III
AUL54_02350	PWY-7817	AUL54_02350
AUL54_02505	PWY-7980	AUL54_02505
AUL54_02575	PWY-5392	reductive TCA cycle II
AUL54_02575	PWY-5537	pyruvate fermentation to acetate V
AUL54_02575	PWY-5538	pyruvate fermentation to acetate VI
AUL54_02575	PWY-5690	TCA cycle II (plants and fungi)
AUL54_02575	PWY-5913	TCA cycle VI (obligate autotrophs)
AUL54_02575	PWY-6728	methylaspartate cycle
AUL54_02575	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AUL54_02575	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AUL54_02580	PWY-5392	reductive TCA cycle II
AUL54_02580	PWY-5537	pyruvate fermentation to acetate V
AUL54_02580	PWY-5538	pyruvate fermentation to acetate VI
AUL54_02580	PWY-5690	TCA cycle II (plants and fungi)
AUL54_02580	PWY-5913	TCA cycle VI (obligate autotrophs)
AUL54_02580	PWY-6728	methylaspartate cycle
AUL54_02580	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AUL54_02580	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AUL54_02610	PWY-6829	tRNA methylation (yeast)
AUL54_02610	PWY-7285	methylwyosine biosynthesis
AUL54_02610	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
AUL54_02670	PWY-5367	petroselinate biosynthesis
AUL54_02670	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AUL54_02670	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AUL54_02670	PWY-5989	stearate biosynthesis II (bacteria and plants)
AUL54_02670	PWY-5994	palmitate biosynthesis I (animals and fungi)
AUL54_02670	PWY-6113	superpathway of mycolate biosynthesis
AUL54_02670	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AUL54_02670	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AUL54_02670	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AUL54_02670	PWY-7663	gondoate biosynthesis (anaerobic)
AUL54_02670	PWY-7664	oleate biosynthesis IV (anaerobic)
AUL54_02670	PWY-7858	AUL54_02670
AUL54_02670	PWYG-321	mycolate biosynthesis
AUL54_02675	PWY-4381	fatty acid biosynthesis initiation I
AUL54_02675	PWY-6799	fatty acid biosynthesis (plant mitochondria)
AUL54_02675	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AUL54_02725	PWY-6898	thiamin salvage III
AUL54_02725	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AUL54_02725	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AUL54_02725	PWY-7356	thiamin salvage IV (yeast)
AUL54_02730	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AUL54_02730	PWY-5723	Rubisco shunt
AUL54_02775	PWY-7851	AUL54_02775
AUL54_02785	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AUL54_02815	PWY-5194	siroheme biosynthesis
AUL54_02815	PWY-5196	factor 430 biosynthesis
AUL54_02815	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AUL54_02820	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AUL54_02825	PWY-5194	siroheme biosynthesis
AUL54_02825	PWY-5196	factor 430 biosynthesis
AUL54_02825	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AUL54_02830	PWY-5340	sulfate activation for sulfonation
AUL54_02835	PWY-5278	sulfite oxidation III
AUL54_02835	PWY-5340	sulfate activation for sulfonation
AUL54_02835	PWY-6683	sulfate reduction III (assimilatory)
AUL54_02835	PWY-6932	selenate reduction
AUL54_02850	PWY-5686	UMP biosynthesis
AUL54_02850	PWY-7790	AUL54_02850
AUL54_02850	PWY-7791	AUL54_02850
AUL54_02855	PWY-5686	UMP biosynthesis
AUL54_02855	PWY-7790	AUL54_02855
AUL54_02855	PWY-7791	AUL54_02855
AUL54_02870	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AUL54_02870	PWY-5686	UMP biosynthesis
AUL54_02870	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AUL54_02870	PWY-7790	AUL54_02870
AUL54_02870	PWY-7791	AUL54_02870
AUL54_02875	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AUL54_02875	PWY-5686	UMP biosynthesis
AUL54_02875	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AUL54_02875	PWY-7790	AUL54_02875
AUL54_02875	PWY-7791	AUL54_02875
AUL54_02880	PWY-5686	UMP biosynthesis
AUL54_02880	PWY-7790	AUL54_02880
AUL54_02880	PWY-7791	AUL54_02880
AUL54_02885	PWY-5686	UMP biosynthesis
AUL54_02885	PWY-7790	AUL54_02885
AUL54_02885	PWY-7791	AUL54_02885
AUL54_02895	PWY-7183	pyrimidine nucleobases salvage I
AUL54_02905	PWY-7884	AUL54_02905
AUL54_02940	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AUL54_03000	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AUL54_03000	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AUL54_03000	PWY-7953	AUL54_03000
AUL54_03005	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AUL54_03005	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AUL54_03005	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AUL54_03005	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AUL54_03010	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AUL54_03010	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AUL54_03010	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AUL54_03010	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AUL54_03015	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AUL54_03015	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AUL54_03020	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AUL54_03020	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AUL54_03020	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AUL54_03060	PWY-6654	phosphopantothenate biosynthesis III
AUL54_03100	PWY-7851	AUL54_03100
AUL54_03150	PWY-3781	aerobic respiration I (cytochrome c)
AUL54_03150	PWY-4521	arsenite oxidation I (respiratory)
AUL54_03150	PWY-6692	Fe(II) oxidation
AUL54_03150	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AUL54_03160	PWY-3781	aerobic respiration I (cytochrome c)
AUL54_03160	PWY-4521	arsenite oxidation I (respiratory)
AUL54_03160	PWY-6692	Fe(II) oxidation
AUL54_03160	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AUL54_03180	PWY-5750	itaconate biosynthesis
AUL54_03180	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AUL54_03180	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
AUL54_03185	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AUL54_03185	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AUL54_03185	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AUL54_03185	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AUL54_03315	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
AUL54_03315	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AUL54_03375	PWY-4381	fatty acid biosynthesis initiation I
AUL54_03375	PWY-6799	fatty acid biosynthesis (plant mitochondria)
AUL54_03375	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AUL54_03410	PWY-6610	adenine and adenosine salvage IV
AUL54_03450	PWY-6654	phosphopantothenate biosynthesis III
AUL54_03510	PWY-6823	molybdenum cofactor biosynthesis
AUL54_03510	PWY-7887	AUL54_03510
AUL54_03520	PWY-6823	molybdenum cofactor biosynthesis
AUL54_03530	PWY-5964	guanylyl molybdenum cofactor biosynthesis
AUL54_03530	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
AUL54_03560	PWY-2941	L-lysine biosynthesis II
AUL54_03565	PWY-2941	L-lysine biosynthesis II
AUL54_03725	PWY-7799	AUL54_03725
AUL54_03725	PWY-7800	AUL54_03725
AUL54_03780	PWY-6700	queuosine biosynthesis
AUL54_03785	PWY-6703	preQ<sub>0</sub> biosynthesis
AUL54_03795	PWY-6703	preQ<sub>0</sub> biosynthesis
AUL54_03840	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
AUL54_03840	PWY-5389	3-methylthiopropanoate biosynthesis
AUL54_03845	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
AUL54_03850	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
AUL54_03855	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
AUL54_03855	PWY-5532	adenosine nucleotides degradation IV
AUL54_03855	PWY-5723	Rubisco shunt
AUL54_03870	PWY-6754	<i>S</i>-methyl-5'-thioadenosine degradation I
AUL54_03875	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
AUL54_03875	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
AUL54_04010	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AUL54_04010	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
AUL54_04010	PWY-6936	seleno-amino acid biosynthesis
AUL54_04010	PWY-702	L-methionine biosynthesis II
AUL54_04065	PWY-3341	L-proline biosynthesis III
AUL54_04065	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AUL54_04070	PWY-3341	L-proline biosynthesis III
AUL54_04070	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AUL54_04075	PWY-2201	folate transformations I
AUL54_04075	PWY-5497	purine nucleobases degradation II (anaerobic)
AUL54_04075	PWY-7909	AUL54_04075
AUL54_04460	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AUL54_04460	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AUL54_04470	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AUL54_04470	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AUL54_04470	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AUL54_04470	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AUL54_04485	PWY-1881	formate oxidation to CO<sub>2</sub>
AUL54_04485	PWY-5497	purine nucleobases degradation II (anaerobic)
AUL54_04485	PWY-6696	oxalate degradation III
AUL54_04485	PWY-7985	AUL54_04485
AUL54_04540	PWY-3821	galactose degradation III
AUL54_04540	PWY-6317	galactose degradation I (Leloir pathway)
AUL54_04540	PWY-6527	stachyose degradation
AUL54_04545	PWY-3821	galactose degradation III
AUL54_04545	PWY-6317	galactose degradation I (Leloir pathway)
AUL54_04545	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
AUL54_04545	PWY-6527	stachyose degradation
AUL54_04545	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
AUL54_04545	PWY-7344	UDP-D-galactose biosynthesis
AUL54_04550	PWY-6317	galactose degradation I (Leloir pathway)
AUL54_04550	PWY-6527	stachyose degradation
AUL54_04765	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AUL54_04765	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AUL54_04765	PWY-5989	stearate biosynthesis II (bacteria and plants)
AUL54_04765	PWY-6113	superpathway of mycolate biosynthesis
AUL54_04765	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AUL54_04765	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AUL54_04765	PWY-7663	gondoate biosynthesis (anaerobic)
AUL54_04765	PWY-7664	oleate biosynthesis IV (anaerobic)
AUL54_04765	PWY-7858	AUL54_04765
AUL54_04765	PWYG-321	mycolate biosynthesis
AUL54_04770	PWY-6910	hydroxymethylpyrimidine salvage
AUL54_04770	PWY-7356	thiamin salvage IV (yeast)
AUL54_04770	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AUL54_04780	PWY-6891	thiazole biosynthesis II (Bacillus)
AUL54_04780	PWY-6892	thiazole biosynthesis I (E. coli)
AUL54_04790	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AUL54_04790	PWY-7806	AUL54_04790
AUL54_04795	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AUL54_04795	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AUL54_04795	PWY-6897	thiamin salvage II
AUL54_04795	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AUL54_04795	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AUL54_04795	PWY-7356	thiamin salvage IV (yeast)
AUL54_04795	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AUL54_04800	PWY-6899	base-degraded thiamin salvage
AUL54_04800	PWY-7356	thiamin salvage IV (yeast)
AUL54_04820	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AUL54_04820	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AUL54_04820	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
AUL54_04960	PWY-4381	fatty acid biosynthesis initiation I
AUL54_05000	PWY-4981	L-proline biosynthesis II (from arginine)
AUL54_05000	PWY-4984	urea cycle
AUL54_05000	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AUL54_05005	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AUL54_05005	PWY-5686	UMP biosynthesis
AUL54_05005	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AUL54_05005	PWY-7790	AUL54_05005
AUL54_05005	PWY-7791	AUL54_05005
AUL54_05010	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AUL54_05010	PWY-5686	UMP biosynthesis
AUL54_05010	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AUL54_05010	PWY-7790	AUL54_05010
AUL54_05010	PWY-7791	AUL54_05010
AUL54_05020	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AUL54_05020	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AUL54_05025	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AUL54_05030	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AUL54_05030	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AUL54_05095	PWY-2201	folate transformations I
AUL54_05095	PWY-3841	folate transformations II
AUL54_05375	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AUL54_05375	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AUL54_05400	PWY-4381	fatty acid biosynthesis initiation I
AUL54_05415	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AUL54_05425	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
AUL54_05425	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
AUL54_05425	PWY-7766	AUL54_05425
AUL54_05430	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AUL54_05430	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AUL54_05430	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AUL54_05430	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AUL54_05715	PWY-5667	CDP-diacylglycerol biosynthesis I
AUL54_05715	PWY-5981	CDP-diacylglycerol biosynthesis III
AUL54_05715	PWY-6453	stigma estolide biosynthesis
AUL54_05715	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
AUL54_05715	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
AUL54_05715	PWY-7587	oleate biosynthesis III (cyanobacteria)
AUL54_05715	PWY-7589	palmitoleate biosynthesis III (cyanobacteria)
AUL54_05715	PWY-7782	AUL54_05715
AUL54_05775	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AUL54_05775	PWY-5491	diethylphosphate degradation
AUL54_05825	PWY-6749	CMP-legionaminate biosynthesis I
AUL54_05830	PWY-4261	glycerol degradation I
AUL54_05830	PWY-6118	glycerol-3-phosphate shuttle
AUL54_05830	PWY-6952	glycerophosphodiester degradation
AUL54_05835	PWY-4261	glycerol degradation I
AUL54_06010	PWY-6700	queuosine biosynthesis
AUL54_06110	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
AUL54_06260	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AUL54_06720	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
AUL54_06720	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AUL54_06840	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AUL54_06840	PWY-6416	quinate degradation II
AUL54_06840	PWY-6707	gallate biosynthesis
AUL54_06845	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AUL54_06915	PWY-7799	AUL54_06915
AUL54_06915	PWY-7800	AUL54_06915
AUL54_07110	PWY-5451	acetone degradation I (to methylglyoxal)
AUL54_07110	PWY-5665	vanillin biosynthesis I
AUL54_07110	PWY-6398	melatonin degradation I
AUL54_07110	PWY-6992	1,5-anhydrofructose degradation
AUL54_07110	PWY-7466	acetone degradation III (to propane-1,2-diol)
AUL54_07110	PWY-7826	AUL54_07110
AUL54_07250	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
AUL54_07310	PWY-6610	adenine and adenosine salvage IV
AUL54_07320	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AUL54_07320	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AUL54_07320	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AUL54_07325	PWY-6123	inosine-5'-phosphate biosynthesis I
AUL54_07325	PWY-6124	inosine-5'-phosphate biosynthesis II
AUL54_07325	PWY-7234	inosine-5'-phosphate biosynthesis III
AUL54_07330	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AUL54_07330	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
AUL54_07335	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AUL54_07335	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AUL54_07335	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AUL54_07340	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AUL54_07340	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AUL54_07340	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AUL54_07340	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
AUL54_07345	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AUL54_07345	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AUL54_07345	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AUL54_07350	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AUL54_07350	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AUL54_07350	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AUL54_07355	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AUL54_07355	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AUL54_07355	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AUL54_07360	PWY-6123	inosine-5'-phosphate biosynthesis I
AUL54_07360	PWY-6124	inosine-5'-phosphate biosynthesis II
AUL54_07360	PWY-7234	inosine-5'-phosphate biosynthesis III
AUL54_07365	PWY-6123	inosine-5'-phosphate biosynthesis I
AUL54_07365	PWY-6124	inosine-5'-phosphate biosynthesis II
AUL54_07365	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AUL54_07365	PWY-7234	inosine-5'-phosphate biosynthesis III
AUL54_07375	PWY-6123	inosine-5'-phosphate biosynthesis I
AUL54_07375	PWY-7234	inosine-5'-phosphate biosynthesis III
AUL54_07415	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AUL54_07445	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AUL54_07445	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AUL54_07455	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
AUL54_07455	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
AUL54_07455	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
AUL54_07610	PWY-6823	molybdenum cofactor biosynthesis
AUL54_07640	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AUL54_07640	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AUL54_07640	PWY-6896	thiamin salvage I
AUL54_07640	PWY-6897	thiamin salvage II
AUL54_07805	PWY-6349	CDP-archaeol biosynthesis
AUL54_08380	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AUL54_08390	PWY-6012	acyl carrier protein metabolism I
AUL54_08390	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
AUL54_08390	PWY-6289	petrobactin biosynthesis
AUL54_08415	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AUL54_08415	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AUL54_08415	PWY-7953	AUL54_08415
AUL54_08420	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AUL54_08420	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AUL54_08420	PWY-7953	AUL54_08420
AUL54_08695	PWY-4041	&gamma;-glutamyl cycle
AUL54_08695	PWY-7942	AUL54_08695
AUL54_08710	PWY-4041	&gamma;-glutamyl cycle
AUL54_08710	PWY-7942	AUL54_08710
AUL54_08720	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AUL54_08720	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AUL54_08720	PWY-5989	stearate biosynthesis II (bacteria and plants)
AUL54_08720	PWY-5994	palmitate biosynthesis I (animals and fungi)
AUL54_08720	PWY-6113	superpathway of mycolate biosynthesis
AUL54_08720	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AUL54_08720	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AUL54_08720	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AUL54_08720	PWY-7663	gondoate biosynthesis (anaerobic)
AUL54_08720	PWY-7664	oleate biosynthesis IV (anaerobic)
AUL54_08720	PWY-7858	AUL54_08720
AUL54_08720	PWYG-321	mycolate biosynthesis
AUL54_08725	PWY-6531	mannitol cycle
AUL54_08830	PWY-2941	L-lysine biosynthesis II
AUL54_08830	PWY-2942	L-lysine biosynthesis III
AUL54_08830	PWY-5097	L-lysine biosynthesis VI
AUL54_08830	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
AUL54_08830	PWY-6559	spermidine biosynthesis II
AUL54_08830	PWY-6562	norspermidine biosynthesis
AUL54_08830	PWY-7153	grixazone biosynthesis
AUL54_08830	PWY-7977	AUL54_08830
AUL54_08940	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
AUL54_08940	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
AUL54_08940	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
AUL54_08940	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
AUL54_08940	PWY-6978	plastoquinol-9 biosynthesis II
AUL54_08975	PWY-6012	acyl carrier protein metabolism I
AUL54_08975	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
AUL54_08975	PWY-6289	petrobactin biosynthesis
AUL54_09010	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AUL54_09010	PWY-5686	UMP biosynthesis
AUL54_09010	PWY-7790	AUL54_09010
AUL54_09010	PWY-7791	AUL54_09010
AUL54_09010	PWY-7796	AUL54_09010
AUL54_09055	PWY-6683	sulfate reduction III (assimilatory)
AUL54_09065	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AUL54_09065	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AUL54_09065	PWY-5194	siroheme biosynthesis
AUL54_09065	PWY-5196	factor 430 biosynthesis
AUL54_09065	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
AUL54_09070	PWY-101	photosynthesis light reactions
AUL54_09085	PWY-6853	ethylene biosynthesis II (microbes)
AUL54_09090	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
AUL54_09090	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AUL54_09105	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AUL54_09160	PWY-5481	pyruvate fermentation to lactate
AUL54_09160	PWY-6901	superpathway of glucose and xylose degradation
AUL54_09310	PWY-6857	retinol biosynthesis
AUL54_09335	PWY-7942	AUL54_09335
AUL54_09420	PWY-5057	L-valine degradation II
AUL54_09420	PWY-5076	L-leucine degradation III
AUL54_09420	PWY-5078	L-isoleucine degradation II
AUL54_09420	PWY-5101	L-isoleucine biosynthesis II
AUL54_09420	PWY-5103	L-isoleucine biosynthesis III
AUL54_09420	PWY-5104	L-isoleucine biosynthesis IV
AUL54_09420	PWY-5108	L-isoleucine biosynthesis V
AUL54_09420	PWY-7767	AUL54_09420
AUL54_09440	PWY-5669	phosphatidylethanolamine biosynthesis I
AUL54_09450	PWY-5669	phosphatidylethanolamine biosynthesis I
AUL54_09460	PWY-6349	CDP-archaeol biosynthesis
AUL54_09490	PWY-7431	aromatic biogenic amine degradation (bacteria)
AUL54_09630	PWY-6749	CMP-legionaminate biosynthesis I
AUL54_09635	PWY-6749	CMP-legionaminate biosynthesis I
AUL54_09850	PWY-7883	AUL54_09850
AUL54_09930	PWY-7799	AUL54_09930
AUL54_09930	PWY-7800	AUL54_09930
AUL54_09935	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AUL54_10150	PWY-6936	seleno-amino acid biosynthesis
AUL54_10150	PWY-7274	D-cycloserine biosynthesis
AUL54_10150	PWY-7870	AUL54_10150
AUL54_10155	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AUL54_10160	PWY-7560	methylerythritol phosphate pathway II
AUL54_10165	PWY-7560	methylerythritol phosphate pathway II
AUL54_10295	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AUL54_10295	PWY-6148	tetrahydromethanopterin biosynthesis
AUL54_10295	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AUL54_10295	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AUL54_10295	PWY-7852	AUL54_10295
AUL54_10295	PWY-7853	AUL54_10295
AUL54_10300	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AUL54_10300	PWY-6148	tetrahydromethanopterin biosynthesis
AUL54_10300	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
AUL54_10300	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AUL54_10305	PWY-6614	tetrahydrofolate biosynthesis
AUL54_10315	PWY-5958	acridone alkaloid biosynthesis
AUL54_10315	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AUL54_10315	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AUL54_10320	PWY-5958	acridone alkaloid biosynthesis
AUL54_10320	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AUL54_10320	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AUL54_10325	PWY-6936	seleno-amino acid biosynthesis
AUL54_10340	PWY-3961	phosphopantothenate biosynthesis II
AUL54_10350	PWY-6599	guanine and guanosine salvage II
AUL54_10350	PWY-6609	adenine and adenosine salvage III
AUL54_10350	PWY-6610	adenine and adenosine salvage IV
AUL54_10350	PWY-6620	guanine and guanosine salvage
AUL54_10435	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
AUL54_10450	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AUL54_10470	PWY-7560	methylerythritol phosphate pathway II
AUL54_10560	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AUL54_10560	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AUL54_10560	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AUL54_10560	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AUL54_10560	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AUL54_10560	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AUL54_10680	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
AUL54_10685	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
AUL54_10690	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
AUL54_10695	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AUL54_10695	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AUL54_10700	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AUL54_10700	PWY-6596	adenosine nucleotides degradation I
AUL54_10700	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AUL54_11020	PWY-7805	AUL54_11020
AUL54_11020	PWY-7807	AUL54_11020
AUL54_11040	PWY-7805	AUL54_11040
AUL54_11040	PWY-7807	AUL54_11040
AUL54_11100	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
AUL54_11185	PWY-3341	L-proline biosynthesis III
AUL54_11185	PWY-4981	L-proline biosynthesis II (from arginine)
AUL54_11185	PWY-6344	L-ornithine degradation II (Stickland reaction)
AUL54_11185	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AUL54_11195	PWY-31	canavanine degradation
AUL54_11195	PWY-4984	urea cycle
AUL54_11195	PWY-6305	putrescine biosynthesis IV
AUL54_11195	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AUL54_11290	PWY-5484	glycolysis II (from fructose 6-phosphate)
AUL54_11395	PWY-5642	2,4-dinitrotoluene degradation
AUL54_11400	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
AUL54_11420	PWY-5940	streptomycin biosynthesis
AUL54_11420	PWY-7237	<i>myo</i>-, <i>chiro</i>- and <i>scillo</i>-inositol degradation
AUL54_11420	PWY-7241	<I>myo</I>-inositol degradation II
AUL54_11435	PWY-1042	glycolysis IV (plant cytosol)
AUL54_11435	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AUL54_11435	PWY-5484	glycolysis II (from fructose 6-phosphate)
AUL54_11435	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AUL54_11435	PWY-7385	1,3-propanediol biosynthesis (engineered)
AUL54_11505	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
AUL54_11515	PWY-7181	pyrimidine deoxyribonucleosides degradation
AUL54_11690	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AUL54_11690	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
AUL54_11690	PWY-6936	seleno-amino acid biosynthesis
AUL54_11690	PWY-702	L-methionine biosynthesis II
AUL54_11705	PWY-3821	galactose degradation III
AUL54_11705	PWY-6317	galactose degradation I (Leloir pathway)
AUL54_11705	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
AUL54_11705	PWY-6527	stachyose degradation
AUL54_11705	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
AUL54_11705	PWY-7344	UDP-D-galactose biosynthesis
AUL54_11845	PWY-40	putrescine biosynthesis I
AUL54_11845	PWY-6305	putrescine biosynthesis IV
AUL54_11865	PWY-5057	L-valine degradation II
AUL54_11865	PWY-5076	L-leucine degradation III
AUL54_11865	PWY-5078	L-isoleucine degradation II
AUL54_11865	PWY-5101	L-isoleucine biosynthesis II
AUL54_11865	PWY-5103	L-isoleucine biosynthesis III
AUL54_11865	PWY-5104	L-isoleucine biosynthesis IV
AUL54_11865	PWY-5108	L-isoleucine biosynthesis V
AUL54_11865	PWY-7767	AUL54_11865
AUL54_11895	PWY-5839	menaquinol-7 biosynthesis
AUL54_11895	PWY-5851	demethylmenaquinol-9 biosynthesis
AUL54_11895	PWY-5852	demethylmenaquinol-8 biosynthesis I
AUL54_11895	PWY-5853	demethylmenaquinol-6 biosynthesis I
AUL54_11895	PWY-5890	menaquinol-10 biosynthesis
AUL54_11895	PWY-5891	menaquinol-11 biosynthesis
AUL54_11895	PWY-5892	menaquinol-12 biosynthesis
AUL54_11895	PWY-5895	menaquinol-13 biosynthesis
AUL54_11920	PWY-5386	methylglyoxal degradation I
AUL54_11950	PWY-6897	thiamin salvage II
AUL54_11950	PWY-7356	thiamin salvage IV (yeast)
AUL54_11950	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AUL54_11955	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
AUL54_11955	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
AUL54_11955	PWY-6897	thiamin salvage II
AUL54_11955	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
AUL54_11955	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
AUL54_11955	PWY-7356	thiamin salvage IV (yeast)
AUL54_11955	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AUL54_12005	PWY-3821	galactose degradation III
AUL54_12005	PWY-6317	galactose degradation I (Leloir pathway)
AUL54_12005	PWY-6527	stachyose degradation
AUL54_12010	PWY-6317	galactose degradation I (Leloir pathway)
AUL54_12010	PWY-6527	stachyose degradation
AUL54_12025	PWY-3781	aerobic respiration I (cytochrome c)
AUL54_12025	PWY-4521	arsenite oxidation I (respiratory)
AUL54_12025	PWY-6692	Fe(II) oxidation
AUL54_12025	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AUL54_12050	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AUL54_12050	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AUL54_12050	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AUL54_12050	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AUL54_12095	PWY-6910	hydroxymethylpyrimidine salvage
AUL54_12095	PWY-7356	thiamin salvage IV (yeast)
AUL54_12095	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
AUL54_12170	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AUL54_12185	PWY-3221	dTDP-L-rhamnose biosynthesis II
AUL54_12185	PWY-6808	dTDP-D-forosamine biosynthesis
AUL54_12185	PWY-6942	dTDP-D-desosamine biosynthesis
AUL54_12185	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
AUL54_12185	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
AUL54_12185	PWY-6974	dTDP-L-olivose biosynthesis
AUL54_12185	PWY-6976	dTDP-L-mycarose biosynthesis
AUL54_12185	PWY-7104	dTDP-L-megosamine biosynthesis
AUL54_12185	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
AUL54_12185	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
AUL54_12185	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
AUL54_12185	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
AUL54_12185	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
AUL54_12185	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
AUL54_12185	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
AUL54_12185	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
AUL54_12185	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
AUL54_12185	PWY-7688	AUL54_12185
AUL54_12185	PWY-7814	AUL54_12185
AUL54_12205	PWY-6853	ethylene biosynthesis II (microbes)
AUL54_12270	PWY-1281	sulfoacetaldehyde degradation I
AUL54_12270	PWY-5482	pyruvate fermentation to acetate II
AUL54_12270	PWY-5485	pyruvate fermentation to acetate IV
AUL54_12270	PWY-5497	purine nucleobases degradation II (anaerobic)
AUL54_12270	PWY-6637	sulfolactate degradation II
AUL54_12285	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AUL54_12285	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AUL54_12380	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AUL54_12380	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AUL54_12380	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AUL54_12380	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AUL54_12390	PWY-40	putrescine biosynthesis I
AUL54_12390	PWY-6305	putrescine biosynthesis IV
AUL54_12430	PWY-6748	nitrate reduction VII (denitrification)
AUL54_12435	PWY-6748	nitrate reduction VII (denitrification)
AUL54_12490	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
AUL54_12490	PWY-7177	UTP and CTP dephosphorylation II
AUL54_12490	PWY-7185	UTP and CTP dephosphorylation I
AUL54_12505	PWY-1042	glycolysis IV (plant cytosol)
AUL54_12505	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AUL54_12505	PWY-5484	glycolysis II (from fructose 6-phosphate)
AUL54_12505	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AUL54_12505	PWY-7385	1,3-propanediol biosynthesis (engineered)
AUL54_12510	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AUL54_12510	PWY-5723	Rubisco shunt
AUL54_12515	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AUL54_12515	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AUL54_12515	PWY-7953	AUL54_12515
AUL54_12520	PWY-5484	glycolysis II (from fructose 6-phosphate)
AUL54_12530	PWY-7980	AUL54_12530
AUL54_12540	PWY-7199	pyrimidine deoxyribonucleosides salvage
AUL54_12620	PWY-1622	formaldehyde assimilation I (serine pathway)
AUL54_12620	PWY-181	photorespiration
AUL54_12620	PWY-2161	folate polyglutamylation
AUL54_12620	PWY-2201	folate transformations I
AUL54_12620	PWY-3661	glycine betaine degradation I
AUL54_12620	PWY-3661-1	glycine betaine degradation II (mammalian)
AUL54_12620	PWY-3841	folate transformations II
AUL54_12620	PWY-5497	purine nucleobases degradation II (anaerobic)
AUL54_12625	PWY-7183	pyrimidine nucleobases salvage I
AUL54_12655	PWY-7980	AUL54_12655
AUL54_12665	PWY-7980	AUL54_12665
AUL54_12690	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AUL54_12690	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AUL54_12690	PWY-7953	AUL54_12690
AUL54_12715	PWY-6823	molybdenum cofactor biosynthesis
AUL54_12735	PWY-5704	urea degradation II
AUL54_12740	PWY-5704	urea degradation II
AUL54_12745	PWY-5704	urea degradation II
AUL54_12755	PWY-6717	(1,4)-&beta;-xylan degradation
AUL54_12755	PWY-6784	cellulose and hemicellulose degradation (cellulolosome)
AUL54_12800	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AUL54_12800	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AUL54_12800	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AUL54_12800	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AUL54_12865	PWY-5971	palmitate biosynthesis II (bacteria and plants)
AUL54_12865	PWY-5973	<i>cis</i>-vaccenate biosynthesis
AUL54_12865	PWY-5989	stearate biosynthesis II (bacteria and plants)
AUL54_12865	PWY-5994	palmitate biosynthesis I (animals and fungi)
AUL54_12865	PWY-6113	superpathway of mycolate biosynthesis
AUL54_12865	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
AUL54_12865	PWY-6519	8-amino-7-oxononanoate biosynthesis I
AUL54_12865	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AUL54_12865	PWY-7663	gondoate biosynthesis (anaerobic)
AUL54_12865	PWY-7664	oleate biosynthesis IV (anaerobic)
AUL54_12865	PWY-7858	AUL54_12865
AUL54_12865	PWYG-321	mycolate biosynthesis
AUL54_12930	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
AUL54_12930	PWY-7820	AUL54_12930
AUL54_12980	PWY-4041	&gamma;-glutamyl cycle
AUL54_12980	PWY-4061	glutathione-mediated detoxification I
AUL54_12980	PWY-5826	hypoglycin biosynthesis
AUL54_12980	PWY-6842	glutathione-mediated detoxification II
AUL54_12980	PWY-7112	4-hydroxy-2-nonenal detoxification
AUL54_12980	PWY-7559	glutathione degradation (DUG pathway - yeast)
AUL54_13025	PWY-5101	L-isoleucine biosynthesis II
AUL54_13025	PWY-5103	L-isoleucine biosynthesis III
AUL54_13025	PWY-5104	L-isoleucine biosynthesis IV
AUL54_13025	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AUL54_13025	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AUL54_13025	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AUL54_13025	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AUL54_13030	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AUL54_13140	PWY-3861	mannitol degradation II
AUL54_13140	PWY-3881	mannitol biosynthesis
AUL54_13140	PWY-5659	GDP-mannose biosynthesis
AUL54_13140	PWY-6992	1,5-anhydrofructose degradation
AUL54_13140	PWY-7456	mannan degradation
AUL54_13140	PWY-7586	&beta;-1,4-D-mannosyl-<i>N</i>-acetyl-D-glucosamine degradation
AUL54_13140	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
AUL54_13155	PWY-7815	AUL54_13155
AUL54_13155	PWY-7816	AUL54_13155
AUL54_13155	PWY-7819	AUL54_13155
AUL54_13160	PWY-7815	AUL54_13160
AUL54_13160	PWY-7816	AUL54_13160
AUL54_13160	PWY-7819	AUL54_13160
AUL54_13185	PWY-3801	sucrose degradation II (sucrose synthase)
AUL54_13185	PWY-6527	stachyose degradation
AUL54_13185	PWY-7238	sucrose biosynthesis II
AUL54_13185	PWY-7343	UDP-glucose biosynthesis
AUL54_13185	PWY-7817	AUL54_13185
AUL54_13230	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
AUL54_13230	PWY-7820	AUL54_13230
AUL54_13255	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AUL54_13255	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AUL54_13255	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AUL54_13495	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AUL54_13495	PWY-6855	chitin degradation I (archaea)
AUL54_13495	PWY-6906	chitin derivatives degradation
AUL54_13500	PWY-6906	chitin derivatives degradation
AUL54_13500	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
AUL54_13500	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
AUL54_13515	PWY-7805	AUL54_13515
AUL54_13515	PWY-7807	AUL54_13515
AUL54_13650	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AUL54_13650	PWY-5743	3-hydroxypropanoate cycle
AUL54_13650	PWY-5744	glyoxylate assimilation
AUL54_13650	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AUL54_13650	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AUL54_13650	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AUL54_13650	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AUL54_13920	PWY-4261	glycerol degradation I
AUL54_13920	PWY-5530	sorbitol biosynthesis II
AUL54_13980	PWY-1042	glycolysis IV (plant cytosol)
AUL54_13980	PWY-5484	glycolysis II (from fructose 6-phosphate)
AUL54_13980	PWY-6901	superpathway of glucose and xylose degradation
AUL54_13980	PWY-7003	glycerol degradation to butanol
AUL54_13985	PWY-1042	glycolysis IV (plant cytosol)
AUL54_13985	PWY-5484	glycolysis II (from fructose 6-phosphate)
AUL54_13985	PWY-6886	1-butanol autotrophic biosynthesis
AUL54_13985	PWY-6901	superpathway of glucose and xylose degradation
AUL54_13985	PWY-7003	glycerol degradation to butanol
AUL54_13990	PWY-1042	glycolysis IV (plant cytosol)
AUL54_13990	PWY-5484	glycolysis II (from fructose 6-phosphate)
AUL54_13990	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AUL54_13990	PWY-7003	glycerol degradation to butanol
AUL54_13995	PWY-1042	glycolysis IV (plant cytosol)
AUL54_13995	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AUL54_13995	PWY-5484	glycolysis II (from fructose 6-phosphate)
AUL54_13995	PWY-5723	Rubisco shunt
AUL54_13995	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AUL54_13995	PWY-6886	1-butanol autotrophic biosynthesis
AUL54_13995	PWY-6901	superpathway of glucose and xylose degradation
AUL54_13995	PWY-7003	glycerol degradation to butanol
AUL54_13995	PWY-7124	ethylene biosynthesis V (engineered)
AUL54_13995	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AUL54_14000	PWY-1042	glycolysis IV (plant cytosol)
AUL54_14000	PWY-1622	formaldehyde assimilation I (serine pathway)
AUL54_14000	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AUL54_14000	PWY-5484	glycolysis II (from fructose 6-phosphate)
AUL54_14000	PWY-5723	Rubisco shunt
AUL54_14000	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AUL54_14000	PWY-6886	1-butanol autotrophic biosynthesis
AUL54_14000	PWY-6901	superpathway of glucose and xylose degradation
AUL54_14000	PWY-7003	glycerol degradation to butanol
AUL54_14000	PWY-7124	ethylene biosynthesis V (engineered)
AUL54_14000	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AUL54_14305	PWY-6683	sulfate reduction III (assimilatory)
AUL54_14310	PWY-6683	sulfate reduction III (assimilatory)
AUL54_14420	PWY-6698	oxalate degradation V
AUL54_14530	PWY-5392	reductive TCA cycle II
AUL54_14530	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AUL54_14530	PWY-5690	TCA cycle II (plants and fungi)
AUL54_14530	PWY-5913	TCA cycle VI (obligate autotrophs)
AUL54_14530	PWY-6728	methylaspartate cycle
AUL54_14530	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AUL54_14530	PWY-7254	TCA cycle VII (acetate-producers)
AUL54_14530	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AUL54_14620	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
AUL54_14620	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
AUL54_14630	PWY-1361	benzoyl-CoA degradation I (aerobic)
AUL54_14630	PWY-5109	2-methylbutanoate biosynthesis
AUL54_14630	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AUL54_14630	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AUL54_14630	PWY-5177	glutaryl-CoA degradation
AUL54_14630	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AUL54_14630	PWY-6435	4-hydroxybenzoate biosynthesis V
AUL54_14630	PWY-6583	pyruvate fermentation to butanol I
AUL54_14630	PWY-6863	pyruvate fermentation to hexanol
AUL54_14630	PWY-6883	pyruvate fermentation to butanol II
AUL54_14630	PWY-6944	androstenedione degradation
AUL54_14630	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AUL54_14630	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AUL54_14630	PWY-7007	methyl ketone biosynthesis
AUL54_14630	PWY-7046	4-coumarate degradation (anaerobic)
AUL54_14630	PWY-7094	fatty acid salvage
AUL54_14630	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AUL54_14630	PWY-735	jasmonic acid biosynthesis
AUL54_14630	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AUL54_14630	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AUL54_14630	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AUL54_14630	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AUL54_14630	PWY-7726	AUL54_14630
AUL54_14630	PWY-7778	AUL54_14630
AUL54_14630	PWY-7779	AUL54_14630
AUL54_14705	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AUL54_14900	PWY-6832	2-aminoethylphosphonate degradation II
AUL54_14920	PWY-5497	purine nucleobases degradation II (anaerobic)
AUL54_14920	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AUL54_14920	PWY-6538	caffeine degradation III (bacteria, via demethylation)
AUL54_14920	PWY-6596	adenosine nucleotides degradation I
AUL54_14920	PWY-6606	guanosine nucleotides degradation II
AUL54_14920	PWY-6607	guanosine nucleotides degradation I
AUL54_14920	PWY-6608	guanosine nucleotides degradation III
AUL54_14920	PWY-6999	theophylline degradation
AUL54_14925	PWY-5497	purine nucleobases degradation II (anaerobic)
AUL54_14925	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AUL54_14925	PWY-6538	caffeine degradation III (bacteria, via demethylation)
AUL54_14925	PWY-6596	adenosine nucleotides degradation I
AUL54_14925	PWY-6606	guanosine nucleotides degradation II
AUL54_14925	PWY-6607	guanosine nucleotides degradation I
AUL54_14925	PWY-6608	guanosine nucleotides degradation III
AUL54_14925	PWY-6999	theophylline degradation
AUL54_14930	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AUL54_14930	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AUL54_14935	PWY-5691	urate degradation to allantoin I
AUL54_14935	PWY-7394	urate degradation to allantoin II
AUL54_14935	PWY-7849	AUL54_14935
AUL54_14940	PWY-5691	urate degradation to allantoin I
AUL54_14940	PWY-7394	urate degradation to allantoin II
AUL54_14940	PWY-7849	AUL54_14940
AUL54_14960	PWY-5697	allantoin degradation to ureidoglycolate I (urea producing)
AUL54_14960	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
AUL54_14995	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AUL54_14995	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AUL54_15035	PWY-702	L-methionine biosynthesis II
AUL54_15070	PWY-2941	L-lysine biosynthesis II
AUL54_15070	PWY-5097	L-lysine biosynthesis VI
AUL54_15125	PWY-101	photosynthesis light reactions
AUL54_15180	PWY-5901	2,3-dihydroxybenzoate biosynthesis
AUL54_15185	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AUL54_15185	PWY-5901	2,3-dihydroxybenzoate biosynthesis
AUL54_15185	PWY-6406	salicylate biosynthesis I
AUL54_15295	PWY-5381	pyridine nucleotide cycling (plants)
AUL54_15420	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AUL54_15420	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AUL54_15420	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AUL54_15420	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AUL54_15500	PWY-3801	sucrose degradation II (sucrose synthase)
AUL54_15500	PWY-5054	sorbitol biosynthesis I
AUL54_15500	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
AUL54_15500	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AUL54_15500	PWY-5659	GDP-mannose biosynthesis
AUL54_15500	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AUL54_15500	PWY-621	sucrose degradation III (sucrose invertase)
AUL54_15500	PWY-622	starch biosynthesis
AUL54_15500	PWY-6981	chitin biosynthesis
AUL54_15500	PWY-6992	1,5-anhydrofructose degradation
AUL54_15500	PWY-7238	sucrose biosynthesis II
AUL54_15500	PWY-7347	sucrose biosynthesis III
AUL54_15500	PWY-7385	1,3-propanediol biosynthesis (engineered)
AUL54_15550	PWY-723	alkylnitronates degradation
AUL54_15600	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
AUL54_15645	PWY-7883	AUL54_15645
AUL54_15665	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
AUL54_15665	PWY-7494	choline degradation IV
AUL54_15830	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AUL54_15830	PWY-5901	2,3-dihydroxybenzoate biosynthesis
AUL54_15830	PWY-6406	salicylate biosynthesis I
AUL54_15835	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AUL54_15840	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AUL54_15845	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AUL54_15850	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AUL54_15855	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
AUL54_15880	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
AUL54_15880	PWY-5743	3-hydroxypropanoate cycle
AUL54_15880	PWY-5744	glyoxylate assimilation
AUL54_15880	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AUL54_15880	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AUL54_15880	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AUL54_15880	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AUL54_15890	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
AUL54_15890	PWY-6153	autoinducer AI-2 biosynthesis I
AUL54_15890	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
AUL54_15915	PWY-6502	oxidized GTP and dGTP detoxification
AUL54_15945	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AUL54_15945	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
AUL54_15950	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
AUL54_15950	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
AUL54_16160	PWY-6936	seleno-amino acid biosynthesis
AUL54_16345	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AUL54_16345	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AUL54_16345	PWY-7953	AUL54_16345
AUL54_16365	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
AUL54_16365	PWY-3461	L-tyrosine biosynthesis II
AUL54_16365	PWY-3462	L-phenylalanine biosynthesis II
AUL54_16365	PWY-6120	L-tyrosine biosynthesis III
AUL54_16365	PWY-6164	3-dehydroquinate biosynthesis I
AUL54_16365	PWY-6627	salinosporamide A biosynthesis
AUL54_16365	PWY-7626	bacilysin biosynthesis
AUL54_16365	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
AUL54_16520	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AUL54_16545	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
AUL54_16545	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AUL54_16545	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
AUL54_16580	PWY-5482	pyruvate fermentation to acetate II
AUL54_16580	PWY-5485	pyruvate fermentation to acetate IV
AUL54_16580	PWY-5497	purine nucleobases degradation II (anaerobic)
AUL54_16590	PWY-4983	L-citrulline-nitric oxide cycle
AUL54_16590	PWY-4984	urea cycle
AUL54_16590	PWY-5	canavanine biosynthesis
AUL54_16590	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AUL54_16590	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AUL54_16595	PWY-4983	L-citrulline-nitric oxide cycle
AUL54_16595	PWY-4984	urea cycle
AUL54_16595	PWY-5	canavanine biosynthesis
AUL54_16595	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
AUL54_16595	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
AUL54_16610	PWY-1281	sulfoacetaldehyde degradation I
AUL54_16610	PWY-5482	pyruvate fermentation to acetate II
AUL54_16610	PWY-5485	pyruvate fermentation to acetate IV
AUL54_16610	PWY-5497	purine nucleobases degradation II (anaerobic)
AUL54_16610	PWY-6637	sulfolactate degradation II
AUL54_16620	PWY-7805	AUL54_16620
AUL54_16620	PWY-7807	AUL54_16620
AUL54_16650	PWY-4381	fatty acid biosynthesis initiation I
AUL54_16650	PWY-5743	3-hydroxypropanoate cycle
AUL54_16650	PWY-5744	glyoxylate assimilation
AUL54_16650	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AUL54_16650	PWY-6722	candicidin biosynthesis
AUL54_16655	PWY-4381	fatty acid biosynthesis initiation I
AUL54_16655	PWY-5743	3-hydroxypropanoate cycle
AUL54_16655	PWY-5744	glyoxylate assimilation
AUL54_16655	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AUL54_16655	PWY-6722	candicidin biosynthesis
AUL54_16660	PWY-1042	glycolysis IV (plant cytosol)
AUL54_16660	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
AUL54_16660	PWY-5484	glycolysis II (from fructose 6-phosphate)
AUL54_16660	PWY-7385	1,3-propanediol biosynthesis (engineered)
AUL54_16665	PWY-1042	glycolysis IV (plant cytosol)
AUL54_16665	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
AUL54_16665	PWY-5484	glycolysis II (from fructose 6-phosphate)
AUL54_16665	PWY-5723	Rubisco shunt
AUL54_16665	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
AUL54_16665	PWY-6886	1-butanol autotrophic biosynthesis
AUL54_16665	PWY-6901	superpathway of glucose and xylose degradation
AUL54_16665	PWY-7003	glycerol degradation to butanol
AUL54_16665	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
AUL54_16665	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AUL54_16690	PWY-5913	TCA cycle VI (obligate autotrophs)
AUL54_16690	PWY-6549	L-glutamine biosynthesis III
AUL54_16690	PWY-6728	methylaspartate cycle
AUL54_16690	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AUL54_16690	PWY-7124	ethylene biosynthesis V (engineered)
AUL54_16690	PWY-7254	TCA cycle VII (acetate-producers)
AUL54_16690	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AUL54_16695	PWY-1622	formaldehyde assimilation I (serine pathway)
AUL54_16695	PWY-5392	reductive TCA cycle II
AUL54_16695	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AUL54_16695	PWY-5690	TCA cycle II (plants and fungi)
AUL54_16695	PWY-5913	TCA cycle VI (obligate autotrophs)
AUL54_16695	PWY-6728	methylaspartate cycle
AUL54_16695	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AUL54_16695	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
AUL54_16695	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AUL54_16725	PWY-7851	AUL54_16725
AUL54_16745	PWY-1042	glycolysis IV (plant cytosol)
AUL54_16745	PWY-5484	glycolysis II (from fructose 6-phosphate)
AUL54_16745	PWY-6901	superpathway of glucose and xylose degradation
AUL54_16745	PWY-7003	glycerol degradation to butanol
AUL54_16750	PWY-6834	spermidine biosynthesis III
AUL54_16850	PWY-4261	glycerol degradation I
AUL54_16855	PWY-6961	L-ascorbate degradation II (bacterial, aerobic)
AUL54_16865	PWY-6349	CDP-archaeol biosynthesis
AUL54_17005	PWY-2941	L-lysine biosynthesis II
AUL54_17005	PWY-2942	L-lysine biosynthesis III
AUL54_17005	PWY-5097	L-lysine biosynthesis VI
AUL54_17005	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
AUL54_17005	PWY-6559	spermidine biosynthesis II
AUL54_17005	PWY-6562	norspermidine biosynthesis
AUL54_17005	PWY-7153	grixazone biosynthesis
AUL54_17005	PWY-7977	AUL54_17005
AUL54_17020	PWY-3781	aerobic respiration I (cytochrome c)
AUL54_17020	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AUL54_17020	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AUL54_17020	PWY-5690	TCA cycle II (plants and fungi)
AUL54_17020	PWY-6728	methylaspartate cycle
AUL54_17020	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AUL54_17020	PWY-7254	TCA cycle VII (acetate-producers)
AUL54_17020	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AUL54_17025	PWY-3781	aerobic respiration I (cytochrome c)
AUL54_17025	PWY-4302	aerobic respiration III (alternative oxidase pathway)
AUL54_17025	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AUL54_17025	PWY-5690	TCA cycle II (plants and fungi)
AUL54_17025	PWY-6728	methylaspartate cycle
AUL54_17025	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AUL54_17025	PWY-7254	TCA cycle VII (acetate-producers)
AUL54_17025	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
AUL54_17045	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
AUL54_17045	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
AUL54_17130	PWY-5101	L-isoleucine biosynthesis II
AUL54_17130	PWY-5103	L-isoleucine biosynthesis III
AUL54_17130	PWY-5104	L-isoleucine biosynthesis IV
AUL54_17130	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AUL54_17130	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AUL54_17130	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AUL54_17130	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AUL54_17135	PWY-5101	L-isoleucine biosynthesis II
AUL54_17135	PWY-5103	L-isoleucine biosynthesis III
AUL54_17135	PWY-5104	L-isoleucine biosynthesis IV
AUL54_17135	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
AUL54_17135	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
AUL54_17135	PWY-6389	(<i>S</i>)-acetoin biosynthesis
AUL54_17135	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AUL54_17140	PWY-5103	L-isoleucine biosynthesis III
AUL54_17140	PWY-7111	pyruvate fermentation to isobutanol (engineered)
AUL54_17145	PWY-6871	3-methylbutanol biosynthesis
AUL54_17150	PWY-7396	butanol and isobutanol biosynthesis (engineered)
AUL54_17200	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AUL54_17210	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AUL54_17210	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AUL54_17215	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AUL54_17215	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AUL54_17220	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AUL54_17220	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
AUL54_17225	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
AUL54_17250	PWY-2161	folate polyglutamylation
AUL54_17340	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
AUL54_17350	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AUL54_17355	PWY-5316	nicotine biosynthesis
AUL54_17355	PWY-7342	superpathway of nicotine biosynthesis
AUL54_17360	PWY-5316	nicotine biosynthesis
AUL54_17360	PWY-5381	pyridine nucleotide cycling (plants)
AUL54_17360	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AUL54_17360	PWY-7342	superpathway of nicotine biosynthesis
AUL54_17365	PWY-5316	nicotine biosynthesis
AUL54_17365	PWY-7342	superpathway of nicotine biosynthesis
AUL54_17400	PWY-6700	queuosine biosynthesis
AUL54_17405	PWY-6700	queuosine biosynthesis
AUL54_17450	PWY-7805	AUL54_17450
AUL54_17450	PWY-7807	AUL54_17450
AUL54_17455	PWY-6605	adenine and adenosine salvage II
AUL54_17455	PWY-6610	adenine and adenosine salvage IV
AUL54_17455	PWY-7805	AUL54_17455
AUL54_17455	PWY-7807	AUL54_17455
AUL54_17470	PWY-7883	AUL54_17470
AUL54_17505	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
AUL54_17510	PWY-7887	AUL54_17510
AUL54_17510	PWY-7892	AUL54_17510
AUL54_17600	PWY-7193	pyrimidine ribonucleosides salvage I
AUL54_17630	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
AUL54_17630	PWY-6153	autoinducer AI-2 biosynthesis I
AUL54_17630	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
AUL54_17655	PWY-1881	formate oxidation to CO<sub>2</sub>
AUL54_17655	PWY-5497	purine nucleobases degradation II (anaerobic)
AUL54_17655	PWY-6696	oxalate degradation III
AUL54_17655	PWY-7985	AUL54_17655
AUL54_17680	PWY-5451	acetone degradation I (to methylglyoxal)
AUL54_17680	PWY-5665	vanillin biosynthesis I
AUL54_17680	PWY-6398	melatonin degradation I
AUL54_17680	PWY-6992	1,5-anhydrofructose degradation
AUL54_17680	PWY-7466	acetone degradation III (to propane-1,2-diol)
AUL54_17680	PWY-7826	AUL54_17680
AUL54_17880	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AUL54_17890	PWY-5381	pyridine nucleotide cycling (plants)
AUL54_17890	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
AUL54_17890	PWY-7761	AUL54_17890
AUL54_17910	PWY-3341	L-proline biosynthesis III
AUL54_17910	PWY-4981	L-proline biosynthesis II (from arginine)
AUL54_17910	PWY-6344	L-ornithine degradation II (Stickland reaction)
AUL54_17920	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AUL54_18055	PWY-7039	phosphatidate metabolism, as a signaling molecule
AUL54_18055	PWY-7817	AUL54_18055
AUL54_18060	PWY-6556	pyrimidine ribonucleosides salvage II
AUL54_18060	PWY-7181	pyrimidine deoxyribonucleosides degradation
AUL54_18060	PWY-7193	pyrimidine ribonucleosides salvage I
AUL54_18060	PWY-7199	pyrimidine deoxyribonucleosides salvage
AUL54_18125	PWY-7560	methylerythritol phosphate pathway II
AUL54_18190	PWY-6854	ethylene biosynthesis III (microbes)
AUL54_18255	PWY-2722	trehalose degradation IV
AUL54_18255	PWY-2723	trehalose degradation V
AUL54_18255	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
AUL54_18255	PWY-5661	GDP-glucose biosynthesis
AUL54_18255	PWY-621	sucrose degradation III (sucrose invertase)
AUL54_18255	PWY-7238	sucrose biosynthesis II
AUL54_18255	PWY-7385	1,3-propanediol biosynthesis (engineered)
AUL54_18410	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AUL54_18410	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AUL54_18440	PWY-7799	AUL54_18440
AUL54_18440	PWY-7800	AUL54_18440
AUL54_18515	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
AUL54_18515	PWY-2201	folate transformations I
AUL54_18515	PWY-3841	folate transformations II
AUL54_18515	PWY-5030	L-histidine degradation III
AUL54_18515	PWY-5497	purine nucleobases degradation II (anaerobic)
AUL54_18515	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
AUL54_18515	PWY-7909	AUL54_18515
AUL54_18535	PWY-6891	thiazole biosynthesis II (Bacillus)
AUL54_18535	PWY-6892	thiazole biosynthesis I (E. coli)
AUL54_18535	PWY-7560	methylerythritol phosphate pathway II
AUL54_18565	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
AUL54_18590	PWY-7511	protein ubiquitylation
AUL54_18620	PWY-1361	benzoyl-CoA degradation I (aerobic)
AUL54_18620	PWY-5109	2-methylbutanoate biosynthesis
AUL54_18620	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
AUL54_18620	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
AUL54_18620	PWY-5177	glutaryl-CoA degradation
AUL54_18620	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AUL54_18620	PWY-6435	4-hydroxybenzoate biosynthesis V
AUL54_18620	PWY-6583	pyruvate fermentation to butanol I
AUL54_18620	PWY-6863	pyruvate fermentation to hexanol
AUL54_18620	PWY-6883	pyruvate fermentation to butanol II
AUL54_18620	PWY-6944	androstenedione degradation
AUL54_18620	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
AUL54_18620	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
AUL54_18620	PWY-7007	methyl ketone biosynthesis
AUL54_18620	PWY-7046	4-coumarate degradation (anaerobic)
AUL54_18620	PWY-7094	fatty acid salvage
AUL54_18620	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
AUL54_18620	PWY-735	jasmonic acid biosynthesis
AUL54_18620	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
AUL54_18620	PWY-7606	docosahexaenoate biosynthesis III (mammals)
AUL54_18620	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
AUL54_18620	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
AUL54_18620	PWY-7726	AUL54_18620
AUL54_18620	PWY-7778	AUL54_18620
AUL54_18620	PWY-7779	AUL54_18620
AUL54_18640	PWY-5747	2-methylcitrate cycle II
AUL54_18655	PWY-1281	sulfoacetaldehyde degradation I
AUL54_18655	PWY-5482	pyruvate fermentation to acetate II
AUL54_18655	PWY-5485	pyruvate fermentation to acetate IV
AUL54_18655	PWY-5497	purine nucleobases degradation II (anaerobic)
AUL54_18655	PWY-6637	sulfolactate degradation II
AUL54_18665	PWY-5482	pyruvate fermentation to acetate II
AUL54_18665	PWY-5485	pyruvate fermentation to acetate IV
AUL54_18665	PWY-5497	purine nucleobases degradation II (anaerobic)
AUL54_18670	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
AUL54_18670	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
AUL54_18725	PWY-5386	methylglyoxal degradation I
AUL54_18725	PWY-5741	ethylmalonyl-CoA pathway
AUL54_18725	PWY-5743	3-hydroxypropanoate cycle
AUL54_18725	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AUL54_18725	PWY-6728	methylaspartate cycle
AUL54_18725	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AUL54_18725	PWY-7854	AUL54_18725
AUL54_18730	PWY-4381	fatty acid biosynthesis initiation I
AUL54_18730	PWY-5743	3-hydroxypropanoate cycle
AUL54_18730	PWY-5744	glyoxylate assimilation
AUL54_18730	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
AUL54_18730	PWY-6722	candicidin biosynthesis
AUL54_18760	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
AUL54_18785	PWY-4381	fatty acid biosynthesis initiation I
AUL54_18785	PWY-6799	fatty acid biosynthesis (plant mitochondria)
AUL54_18785	PWY-723	alkylnitronates degradation
AUL54_18785	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
AUL54_18850	PWY-6174	mevalonate pathway II (archaea)
AUL54_18850	PWY-7391	isoprene biosynthesis II (engineered)
AUL54_18850	PWY-7524	mevalonate pathway III (archaea)
AUL54_18850	PWY-7571	ferrichrome A biosynthesis
AUL54_18850	PWY-922	mevalonate pathway I
AUL54_18860	PWY-3341	L-proline biosynthesis III
AUL54_18860	PWY-4981	L-proline biosynthesis II (from arginine)
AUL54_18860	PWY-6344	L-ornithine degradation II (Stickland reaction)
AUL54_18880	PWY-3961	phosphopantothenate biosynthesis II
AUL54_18980	PWY-5392	reductive TCA cycle II
AUL54_18980	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
AUL54_18980	PWY-5690	TCA cycle II (plants and fungi)
AUL54_18980	PWY-5913	TCA cycle VI (obligate autotrophs)
AUL54_18980	PWY-6728	methylaspartate cycle
AUL54_18980	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
AUL54_18980	PWY-7254	TCA cycle VII (acetate-producers)
AUL54_18980	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
AUL54_19025	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
AUL54_19030	PWY-4202	arsenate detoxification I (glutaredoxin)
AUL54_19030	PWY-5532	adenosine nucleotides degradation IV
AUL54_19030	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
AUL54_19030	PWY-6608	guanosine nucleotides degradation III
AUL54_19030	PWY-6609	adenine and adenosine salvage III
AUL54_19030	PWY-6611	adenine and adenosine salvage V
AUL54_19030	PWY-6620	guanine and guanosine salvage
AUL54_19030	PWY-6627	salinosporamide A biosynthesis
AUL54_19030	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
AUL54_19030	PWY-7179	purine deoxyribonucleosides degradation I
AUL54_19030	PWY-7179-1	purine deoxyribonucleosides degradation
AUL54_19035	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AUL54_19035	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AUL54_19090	PWY-2941	L-lysine biosynthesis II
AUL54_19090	PWY-2942	L-lysine biosynthesis III
AUL54_19090	PWY-5097	L-lysine biosynthesis VI
AUL54_19120	PWY-7991	AUL54_19120
AUL54_19125	PWY-6167	flavin biosynthesis II (archaea)
AUL54_19125	PWY-6168	flavin biosynthesis III (fungi)
AUL54_19125	PWY-7980	AUL54_19125
AUL54_19130	PWY-6167	flavin biosynthesis II (archaea)
AUL54_19130	PWY-6168	flavin biosynthesis III (fungi)
AUL54_19130	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
AUL54_19130	PWY-7991	AUL54_19130
AUL54_19135	PWY-6167	flavin biosynthesis II (archaea)
AUL54_19135	PWY-6168	flavin biosynthesis III (fungi)
AUL54_19165	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AUL54_19165	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AUL54_19300	PWY-7205	CMP phosphorylation
AUL54_19310	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
AUL54_19310	PWY-6174	mevalonate pathway II (archaea)
AUL54_19310	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
AUL54_19310	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
AUL54_19310	PWY-7102	bisabolene biosynthesis
AUL54_19310	PWY-7391	isoprene biosynthesis II (engineered)
AUL54_19310	PWY-7524	mevalonate pathway III (archaea)
AUL54_19310	PWY-7560	methylerythritol phosphate pathway II
AUL54_19310	PWY-922	mevalonate pathway I
AUL54_19325	PWY-5667	CDP-diacylglycerol biosynthesis I
AUL54_19325	PWY-5981	CDP-diacylglycerol biosynthesis III
AUL54_19325	PWY-7902	AUL54_19325
AUL54_19350	PWY-5663	tetrahydrobiopterin biosynthesis I
AUL54_19350	PWY-5664	tetrahydrobiopterin biosynthesis II
AUL54_19350	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
AUL54_19350	PWY-6703	preQ<sub>0</sub> biosynthesis
AUL54_19350	PWY-6983	tetrahydrobiopterin biosynthesis III
AUL54_19350	PWY-7442	drosopterin and aurodrosopterin biosynthesis
AUL54_19350	PWY-7852	AUL54_19350
AUL54_19360	PWY-5807	heptaprenyl diphosphate biosynthesis
AUL54_19365	PWY-5839	menaquinol-7 biosynthesis
AUL54_19365	PWY-5844	menaquinol-9 biosynthesis
AUL54_19365	PWY-5849	menaquinol-6 biosynthesis
AUL54_19365	PWY-5890	menaquinol-10 biosynthesis
AUL54_19365	PWY-5891	menaquinol-11 biosynthesis
AUL54_19365	PWY-5892	menaquinol-12 biosynthesis
AUL54_19365	PWY-5895	menaquinol-13 biosynthesis
AUL54_19370	PWY-5807	heptaprenyl diphosphate biosynthesis
AUL54_19375	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
AUL54_19375	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
AUL54_19375	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
AUL54_19375	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
AUL54_19375	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
AUL54_19375	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
AUL54_19375	PWY-7205	CMP phosphorylation
AUL54_19375	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
AUL54_19375	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AUL54_19375	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
AUL54_19375	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
AUL54_19375	PWY-7224	purine deoxyribonucleosides salvage
AUL54_19375	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
AUL54_19375	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
AUL54_19385	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AUL54_19390	PWY-6164	3-dehydroquinate biosynthesis I
AUL54_19395	PWY-3461	L-tyrosine biosynthesis II
AUL54_19395	PWY-3462	L-phenylalanine biosynthesis II
AUL54_19395	PWY-6120	L-tyrosine biosynthesis III
AUL54_19395	PWY-6627	salinosporamide A biosynthesis
AUL54_19395	PWY-7626	bacilysin biosynthesis
AUL54_19400	PWY-5958	acridone alkaloid biosynthesis
AUL54_19400	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
AUL54_19400	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
AUL54_19435	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
AUL54_19440	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
AUL54_19460	PWY-101	photosynthesis light reactions
AUL54_19485	PWY-6698	oxalate degradation V
AUL54_19500	PWY-2941	L-lysine biosynthesis II
AUL54_19500	PWY-2942	L-lysine biosynthesis III
AUL54_19500	PWY-5097	L-lysine biosynthesis VI
AUL54_19525	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
AUL54_19525	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
AUL54_19530	PWY-6654	phosphopantothenate biosynthesis III
AUL54_19540	PWY-5155	&beta;-alanine biosynthesis III
AUL54_19580	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
AUL54_19580	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
AUL54_19580	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
AUL54_19580	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
AUL54_20310	PWY-7805	AUL54_20310
AUL54_20310	PWY-7807	AUL54_20310
