AUL54_00005 SM00481 DNA polymerase alpha chain like domain AUL54_00310 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AUL54_00310 SM00475 5'-3' exonuclease AUL54_00350 SM00357 Cold shock protein domain AUL54_00375 SM00567 E-Z type HEAT repeats AUL54_00375 SM00932 Scaffold protein Nfu/NifU N terminal AUL54_00450 SM00347 helix_turn_helix multiple antibiotic resistance protein AUL54_00470 SM00857 Resolvase, N terminal domain AUL54_00495 SM00860 SMI1 / KNR4 family AUL54_00505 SM00860 SMI1 / KNR4 family AUL54_00510 SM00860 SMI1 / KNR4 family AUL54_00550 SM00422 helix_turn_helix, mercury resistance AUL54_00615 SM00871 Bacterial transcription activator, effector binding domain AUL54_00625 SM00882 Coenzyme A transferase AUL54_00630 SM00882 Coenzyme A transferase AUL54_00665 SM00014 Acid phosphatase homologues AUL54_00695 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AUL54_00695 SM00245 tail specific protease AUL54_00700 SM00345 helix_turn_helix gluconate operon transcriptional repressor AUL54_00700 SM00866 AUL54_00700 AUL54_00795 SM00257 Lysin motif AUL54_00805 SM00382 ATPases associated with a variety of cellular activities AUL54_00810 SM00327 von Willebrand factor (vWF) type A domain AUL54_00815 SM00861 Transketolase, pyrimidine binding domain AUL54_00825 SM00849 Metallo-beta-lactamase superfamily AUL54_00905 SM00341 Helicase and RNase D C-terminal AUL54_00905 SM00487 DEAD-like helicases superfamily AUL54_00905 SM00490 helicase superfamily c-terminal domain AUL54_00905 SM00956 AUL54_00905 AUL54_00910 SM00257 Lysin motif AUL54_00945 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AUL54_00955 SM00849 Metallo-beta-lactamase superfamily AUL54_00965 SM00342 helix_turn_helix, arabinose operon control protein AUL54_00975 SM00530 Helix-turn-helix XRE-family like proteins AUL54_01035 SM00507 HNH nucleases AUL54_01110 SM00710 Parallel beta-helix repeats AUL54_01195 SM00860 SMI1 / KNR4 family AUL54_01205 SM00347 helix_turn_helix multiple antibiotic resistance protein AUL54_01220 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AUL54_01250 SM00822 AUL54_01250 AUL54_01265 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AUL54_01290 SM00829 Enoylreductase AUL54_01300 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AUL54_01305 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AUL54_01355 SM00823 Phosphopantetheine attachment site AUL54_01360 SM00823 Phosphopantetheine attachment site AUL54_01365 SM00823 Phosphopantetheine attachment site AUL54_01365 SM01294 AUL54_01365 AUL54_01370 SM00823 Phosphopantetheine attachment site AUL54_01370 SM01294 AUL54_01370 AUL54_01400 SM00878 Biotin carboxylase C-terminal domain AUL54_01460 SM00729 Elongator protein 3, MiaB family, Radical SAM AUL54_01460 SM00876 Biotin and Thiamin Synthesis associated domain AUL54_01475 SM00882 Coenzyme A transferase AUL54_01480 SM00882 Coenzyme A transferase AUL54_01490 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AUL54_01495 SM00823 Phosphopantetheine attachment site AUL54_01495 SM00825 Beta-ketoacyl synthase AUL54_01500 SM00823 Phosphopantetheine attachment site AUL54_01505 SM00823 Phosphopantetheine attachment site AUL54_01505 SM00824 Thioesterase AUL54_01510 SM00606 Cellulose Binding Domain Type IV AUL54_01525 SM01067 Cellulose binding domain AUL54_01560 SM00434 DNA Topoisomerase IV AUL54_01565 SM00387 Histidine kinase-like ATPases AUL54_01565 SM00433 TopoisomeraseII AUL54_01570 SM00881 CoA binding domain AUL54_01575 SM01207 AUL54_01575 AUL54_01640 SM00448 cheY-homologous receiver domain AUL54_01665 SM00861 Transketolase, pyrimidine binding domain AUL54_01675 SM00857 Resolvase, N terminal domain AUL54_01680 SM00257 Lysin motif AUL54_01720 SM00710 Parallel beta-helix repeats AUL54_01780 SM00829 Enoylreductase AUL54_01850 SM00860 SMI1 / KNR4 family AUL54_01860 SM01230 AUL54_01860 AUL54_01865 SM00422 helix_turn_helix, mercury resistance AUL54_01880 SM00382 ATPases associated with a variety of cellular activities AUL54_01890 SM00646 AUL54_01890 AUL54_01995 SM00823 Phosphopantetheine attachment site AUL54_01995 SM00825 Beta-ketoacyl synthase AUL54_01995 SM01294 AUL54_01995 AUL54_02000 SM00822 AUL54_02000 AUL54_02000 SM00823 Phosphopantetheine attachment site AUL54_02000 SM00825 Beta-ketoacyl synthase AUL54_02000 SM00826 AUL54_02000 AUL54_02000 SM01294 AUL54_02000 AUL54_02005 SM00822 AUL54_02005 AUL54_02005 SM00823 Phosphopantetheine attachment site AUL54_02005 SM00825 Beta-ketoacyl synthase AUL54_02005 SM00826 AUL54_02005 AUL54_02005 SM01294 AUL54_02005 AUL54_02010 SM00822 AUL54_02010 AUL54_02010 SM00823 Phosphopantetheine attachment site AUL54_02010 SM00825 Beta-ketoacyl synthase AUL54_02010 SM00826 AUL54_02010 AUL54_02010 SM01294 AUL54_02010 AUL54_02015 SM00822 AUL54_02015 AUL54_02015 SM00823 Phosphopantetheine attachment site AUL54_02015 SM00825 Beta-ketoacyl synthase AUL54_02015 SM00826 AUL54_02015 AUL54_02015 SM01294 AUL54_02015 AUL54_02040 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AUL54_02045 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AUL54_02050 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AUL54_02055 SM00849 Metallo-beta-lactamase superfamily AUL54_02095 SM00853 MutL C terminal dimerisation domain AUL54_02095 SM01340 AUL54_02095 AUL54_02100 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AUL54_02100 SM00534 ATPase domain of DNA mismatch repair MUTS family AUL54_02115 SM00729 Elongator protein 3, MiaB family, Radical SAM AUL54_02125 SM00829 Enoylreductase AUL54_02140 SM00322 K homology RNA-binding domain AUL54_02140 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AUL54_02150 SM00382 ATPases associated with a variety of cellular activities AUL54_02155 SM00852 Probable molybdopterin binding domain AUL54_02165 SM00530 Helix-turn-helix XRE-family like proteins AUL54_02200 SM00347 helix_turn_helix multiple antibiotic resistance protein AUL54_02210 SM00345 helix_turn_helix gluconate operon transcriptional repressor AUL54_02210 SM00866 AUL54_02210 AUL54_02215 SM00382 ATPases associated with a variety of cellular activities AUL54_02215 SM00843 AUL54_02215 AUL54_02230 SM00849 Metallo-beta-lactamase superfamily AUL54_02235 SM01130 AUL54_02235 AUL54_02245 SM00859 Semialdehyde dehydrogenase, NAD binding domain AUL54_02275 SM00316 Ribosomal protein S1-like RNA-binding domain AUL54_02275 SM00322 K homology RNA-binding domain AUL54_02280 SM01387 AUL54_02280 AUL54_02285 SM00904 Riboflavin kinase AUL54_02320 SM00316 Ribosomal protein S1-like RNA-binding domain AUL54_02320 SM00322 K homology RNA-binding domain AUL54_02330 SM00479 AUL54_02330 AUL54_02330 SM00481 DNA polymerase alpha chain like domain AUL54_02340 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AUL54_02400 SM00260 Two component signalling adaptor domain AUL54_02405 SM00073 Histidine Phosphotransfer domain AUL54_02405 SM00260 Two component signalling adaptor domain AUL54_02405 SM00387 Histidine kinase-like ATPases AUL54_02405 SM01231 AUL54_02405 AUL54_02410 SM00448 cheY-homologous receiver domain AUL54_02420 SM00962 SRP54-type protein, GTPase domain AUL54_02455 SM00448 cheY-homologous receiver domain AUL54_02505 SM00382 ATPases associated with a variety of cellular activities AUL54_02545 SM00382 ATPases associated with a variety of cellular activities AUL54_02545 SM01086 C-terminal, D2-small domain, of ClpB protein AUL54_02565 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AUL54_02565 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AUL54_02565 SM00493 AUL54_02565 AUL54_02575 SM00881 CoA binding domain AUL54_02635 SM00382 ATPases associated with a variety of cellular activities AUL54_02635 SM00962 SRP54-type protein, GTPase domain AUL54_02635 SM00963 SRP54-type protein, helical bundle domain AUL54_02650 SM00382 ATPases associated with a variety of cellular activities AUL54_02650 SM00962 SRP54-type protein, GTPase domain AUL54_02650 SM00963 SRP54-type protein, helical bundle domain AUL54_02655 SM00968 SMC proteins Flexible Hinge Domain AUL54_02660 SM00358 Double-stranded RNA binding motif AUL54_02660 SM00535 Ribonuclease III family AUL54_02670 SM00822 AUL54_02670 AUL54_02675 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AUL54_02690 SM00487 DEAD-like helicases superfamily AUL54_02690 SM00490 helicase superfamily c-terminal domain AUL54_02705 SM01120 AUL54_02705 AUL54_02705 SM01121 AUL54_02705 AUL54_02725 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain AUL54_02740 SM00220 Serine/Threonine protein kinases, catalytic domain AUL54_02740 SM00740 AUL54_02740 AUL54_02745 SM00331 Sigma factor PP2C-like phosphatases AUL54_02745 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AUL54_02770 SM00487 DEAD-like helicases superfamily AUL54_02770 SM00490 helicase superfamily c-terminal domain AUL54_02780 SM01409 AUL54_02780 AUL54_02785 SM00072 Guanylate kinase homologues. AUL54_02800 SM00831 Cation transporter/ATPase, N-terminus AUL54_02855 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AUL54_02870 SM00851 MGS-like domain AUL54_02870 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AUL54_02870 SM01209 AUL54_02870 AUL54_02875 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AUL54_02900 SM00363 S4 RNA-binding domain AUL54_02925 SM00363 S4 RNA-binding domain AUL54_02960 SM00382 ATPases associated with a variety of cellular activities AUL54_02985 SM00864 Tubulin/FtsZ family, GTPase domain AUL54_02985 SM00865 Tubulin/FtsZ family, C-terminal domain AUL54_02990 SM00842 Cell division protein FtsA AUL54_03030 SM00740 AUL54_03030 AUL54_03035 SM00740 AUL54_03035 AUL54_03135 SM00116 Domain in cystathionine beta-synthase and other proteins. AUL54_03180 SM00878 Biotin carboxylase C-terminal domain AUL54_03205 SM00670 Large family of predicted nucleotide-binding domains AUL54_03225 SM00838 Elongation factor G C-terminus AUL54_03325 SM00861 Transketolase, pyrimidine binding domain AUL54_03340 SM00822 AUL54_03340 AUL54_03340 SM00823 Phosphopantetheine attachment site AUL54_03340 SM01294 AUL54_03340 AUL54_03345 SM00822 AUL54_03345 AUL54_03345 SM00823 Phosphopantetheine attachment site AUL54_03345 SM00825 Beta-ketoacyl synthase AUL54_03345 SM01294 AUL54_03345 AUL54_03350 SM00822 AUL54_03350 AUL54_03350 SM00823 Phosphopantetheine attachment site AUL54_03350 SM00825 Beta-ketoacyl synthase AUL54_03350 SM01294 AUL54_03350 AUL54_03355 SM00822 AUL54_03355 AUL54_03355 SM00823 Phosphopantetheine attachment site AUL54_03355 SM00825 Beta-ketoacyl synthase AUL54_03355 SM01294 AUL54_03355 AUL54_03360 SM00822 AUL54_03360 AUL54_03360 SM00823 Phosphopantetheine attachment site AUL54_03360 SM00825 Beta-ketoacyl synthase AUL54_03360 SM01294 AUL54_03360 AUL54_03365 SM00822 AUL54_03365 AUL54_03365 SM00823 Phosphopantetheine attachment site AUL54_03365 SM00825 Beta-ketoacyl synthase AUL54_03365 SM00826 AUL54_03365 AUL54_03370 SM00822 AUL54_03370 AUL54_03370 SM00823 Phosphopantetheine attachment site AUL54_03370 SM00825 Beta-ketoacyl synthase AUL54_03370 SM00826 AUL54_03370 AUL54_03370 SM01294 AUL54_03370 AUL54_03375 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AUL54_03405 SM00849 Metallo-beta-lactamase superfamily AUL54_03425 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AUL54_03425 SM00091 PAS domain AUL54_03425 SM00387 Histidine kinase-like ATPases AUL54_03425 SM00388 His Kinase A (phosphoacceptor) domain AUL54_03430 SM00966 SpoVT / AbrB like domain AUL54_03455 SM00382 ATPases associated with a variety of cellular activities AUL54_03480 SM00420 helix_turn_helix, Deoxyribose operon repressor AUL54_03480 SM01134 AUL54_03480 AUL54_03485 SM01066 Carbohydrate binding domain AUL54_03490 SM00382 ATPases associated with a variety of cellular activities AUL54_03520 SM00852 Probable molybdopterin binding domain AUL54_03615 SM00052 Putative diguanylate phosphodiesterase AUL54_03635 SM00257 Lysin motif AUL54_03650 SM00260 Two component signalling adaptor domain AUL54_03650 SM00448 cheY-homologous receiver domain AUL54_03660 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AUL54_03660 SM00091 PAS domain AUL54_03660 SM00387 Histidine kinase-like ATPases AUL54_03660 SM00388 His Kinase A (phosphoacceptor) domain AUL54_03685 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AUL54_03685 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AUL54_03715 SM01061 CAT RNA binding domain AUL54_03720 SM00354 helix_turn _helix lactose operon repressor AUL54_03770 SM00822 AUL54_03770 AUL54_03810 SM00382 ATPases associated with a variety of cellular activities AUL54_03810 SM01086 C-terminal, D2-small domain, of ClpB protein AUL54_03825 SM00347 helix_turn_helix multiple antibiotic resistance protein AUL54_03830 SM00387 Histidine kinase-like ATPases AUL54_03830 SM00388 His Kinase A (phosphoacceptor) domain AUL54_03845 SM01007 Class II Aldolase and Adducin N-terminal domain AUL54_03885 SM00091 PAS domain AUL54_03885 SM00387 Histidine kinase-like ATPases AUL54_03885 SM00388 His Kinase A (phosphoacceptor) domain AUL54_03940 SM00052 Putative diguanylate phosphodiesterase AUL54_03940 SM00267 diguanylate cyclase AUL54_03945 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen AUL54_03960 SM00347 helix_turn_helix multiple antibiotic resistance protein AUL54_03970 SM00422 helix_turn_helix, mercury resistance AUL54_03975 SM00116 Domain in cystathionine beta-synthase and other proteins. AUL54_03975 SM00924 MgtE intracellular N domain AUL54_03980 SM00257 Lysin motif AUL54_03980 SM00636 AUL54_03980 AUL54_03990 SM00382 ATPases associated with a variety of cellular activities AUL54_04035 SM00028 Tetratricopeptide repeats AUL54_04055 SM00347 helix_turn_helix multiple antibiotic resistance protein AUL54_04070 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AUL54_04110 SM00382 ATPases associated with a variety of cellular activities AUL54_04120 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AUL54_04135 SM00382 ATPases associated with a variety of cellular activities AUL54_04160 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AUL54_04205 SM00257 Lysin motif AUL54_04205 SM00644 AUL54_04205 AUL54_04270 SM00257 Lysin motif AUL54_04360 SM00382 ATPases associated with a variety of cellular activities AUL54_04375 SM00530 Helix-turn-helix XRE-family like proteins AUL54_04395 SM00257 Lysin motif AUL54_04395 SM00644 AUL54_04395 AUL54_04405 SM00028 Tetratricopeptide repeats AUL54_04425 SM00354 helix_turn _helix lactose operon repressor AUL54_04450 SM00382 ATPases associated with a variety of cellular activities AUL54_04485 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AUL54_04485 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AUL54_04510 SM00612 AUL54_04510 AUL54_04520 SM00420 helix_turn_helix, Deoxyribose operon repressor AUL54_04520 SM01134 AUL54_04520 AUL54_04560 SM00347 helix_turn_helix multiple antibiotic resistance protein AUL54_04690 SM00966 SpoVT / AbrB like domain AUL54_04695 SM00382 ATPases associated with a variety of cellular activities AUL54_04825 SM00954 Region found in RelA / SpoT proteins AUL54_04835 SM01118 AUL54_04835 AUL54_04890 SM00382 ATPases associated with a variety of cellular activities AUL54_04895 SM00382 ATPases associated with a variety of cellular activities AUL54_04940 SM00382 ATPases associated with a variety of cellular activities AUL54_04945 SM00382 ATPases associated with a variety of cellular activities AUL54_04955 SM00825 Beta-ketoacyl synthase AUL54_05005 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AUL54_05010 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AUL54_05030 SM00859 Semialdehyde dehydrogenase, NAD binding domain AUL54_05085 SM00316 Ribosomal protein S1-like RNA-binding domain AUL54_05110 SM00345 helix_turn_helix gluconate operon transcriptional repressor AUL54_05125 SM00342 helix_turn_helix, arabinose operon control protein AUL54_05245 SM00347 helix_turn_helix multiple antibiotic resistance protein AUL54_05285 SM00894 Excalibur calcium-binding domain AUL54_05305 SM00914 AUL54_05305 AUL54_05320 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AUL54_05340 SM00855 Phosphoglycerate mutase family AUL54_05380 SM00849 Metallo-beta-lactamase superfamily AUL54_05460 SM00382 ATPases associated with a variety of cellular activities AUL54_05490 SM00347 helix_turn_helix multiple antibiotic resistance protein AUL54_05525 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AUL54_05545 SM00382 ATPases associated with a variety of cellular activities AUL54_05580 SM00729 Elongator protein 3, MiaB family, Radical SAM AUL54_05630 SM00382 ATPases associated with a variety of cellular activities AUL54_05635 SM00382 ATPases associated with a variety of cellular activities AUL54_05690 SM01091 Transporter associated domain AUL54_05705 SM00422 helix_turn_helix, mercury resistance AUL54_05710 SM01091 Transporter associated domain AUL54_05715 SM00563 Phosphate acyltransferases AUL54_05770 SM00257 Lysin motif AUL54_05775 SM00098 Alkaline phosphatase homologues AUL54_05795 SM00257 Lysin motif AUL54_05820 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AUL54_05820 SM00387 Histidine kinase-like ATPases AUL54_05865 SM00116 Domain in cystathionine beta-synthase and other proteins. AUL54_05915 SM00267 diguanylate cyclase AUL54_05920 SM00357 Cold shock protein domain AUL54_05930 SM00382 ATPases associated with a variety of cellular activities AUL54_05935 SM00382 ATPases associated with a variety of cellular activities AUL54_05940 SM00345 helix_turn_helix gluconate operon transcriptional repressor AUL54_05970 SM00347 helix_turn_helix multiple antibiotic resistance protein AUL54_05980 SM00763 PrkA AAA domain AUL54_06010 SM00567 E-Z type HEAT repeats AUL54_06025 SM00530 Helix-turn-helix XRE-family like proteins AUL54_06055 SM00062 Bacterial periplasmic substrate-binding proteins AUL54_06060 SM00382 ATPases associated with a variety of cellular activities AUL54_06070 SM01060 AUL54_06070 AUL54_06075 SM00382 ATPases associated with a variety of cellular activities AUL54_06080 SM00382 ATPases associated with a variety of cellular activities AUL54_06270 SM00382 ATPases associated with a variety of cellular activities AUL54_06300 SM00478 endonuclease III AUL54_06300 SM00525 AUL54_06300 AUL54_06315 SM00644 AUL54_06315 AUL54_06425 SM00507 HNH nucleases AUL54_06475 SM00382 ATPases associated with a variety of cellular activities AUL54_06525 SM00530 Helix-turn-helix XRE-family like proteins AUL54_06570 SM00287 Bacterial SH3 domain homologues AUL54_06625 SM00347 helix_turn_helix multiple antibiotic resistance protein AUL54_06680 SM00382 ATPases associated with a variety of cellular activities AUL54_06685 SM00382 ATPases associated with a variety of cellular activities AUL54_06715 SM00382 ATPases associated with a variety of cellular activities AUL54_06730 SM00861 Transketolase, pyrimidine binding domain AUL54_06760 SM00478 endonuclease III AUL54_06825 SM00226 Low molecular weight phosphatase family AUL54_06850 SM00354 helix_turn _helix lactose operon repressor AUL54_06955 SM00448 cheY-homologous receiver domain AUL54_06960 SM00387 Histidine kinase-like ATPases AUL54_06985 SM00656 AUL54_06985 AUL54_07000 SM00829 Enoylreductase AUL54_07010 SM00487 DEAD-like helicases superfamily AUL54_07010 SM00490 helicase superfamily c-terminal domain AUL54_07015 SM00382 ATPases associated with a variety of cellular activities AUL54_07025 SM00422 helix_turn_helix, mercury resistance AUL54_07045 SM00382 ATPases associated with a variety of cellular activities AUL54_07060 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AUL54_07125 SM00347 helix_turn_helix multiple antibiotic resistance protein AUL54_07230 SM00046 Diacylglycerol kinase catalytic domain (presumed) AUL54_07245 SM00845 GatB domain AUL54_07280 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AUL54_07280 SM00292 breast cancer carboxy-terminal domain AUL54_07280 SM00532 Ligase N family AUL54_07320 SM01209 AUL54_07320 AUL54_07320 SM01210 AUL54_07320 AUL54_07325 SM00798 AICARFT/IMPCHase bienzyme AUL54_07325 SM00851 MGS-like domain AUL54_07350 SM01211 AUL54_07350 AUL54_07365 SM00998 Adenylosuccinate lyase C-terminus AUL54_07375 SM01001 AIR carboxylase AUL54_07420 SM00460 Transglutaminase/protease-like homologues AUL54_07455 SM01209 AUL54_07455 AUL54_07500 SM00829 Enoylreductase AUL54_07555 SM00829 Enoylreductase AUL54_07560 SM00028 Tetratricopeptide repeats AUL54_07560 SM00382 ATPases associated with a variety of cellular activities AUL54_07580 SM00883 Chaperonin 10 Kd subunit AUL54_07605 SM00881 CoA binding domain AUL54_07615 SM00382 ATPases associated with a variety of cellular activities AUL54_07685 SM00829 Enoylreductase AUL54_07725 SM00345 helix_turn_helix gluconate operon transcriptional repressor AUL54_07725 SM00895 AUL54_07725 AUL54_07760 SM00345 helix_turn_helix gluconate operon transcriptional repressor AUL54_07760 SM00895 AUL54_07760 AUL54_07765 SM01329 AUL54_07765 AUL54_07790 SM00530 Helix-turn-helix XRE-family like proteins AUL54_07795 SM00825 Beta-ketoacyl synthase AUL54_07820 SM00382 ATPases associated with a variety of cellular activities AUL54_07835 SM00421 helix_turn_helix, Lux Regulon AUL54_07835 SM00448 cheY-homologous receiver domain AUL54_07840 SM00387 Histidine kinase-like ATPases AUL54_07845 SM01266 AUL54_07845 AUL54_07890 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AUL54_07890 SM00387 Histidine kinase-like ATPases AUL54_07890 SM00388 His Kinase A (phosphoacceptor) domain AUL54_07895 SM00448 cheY-homologous receiver domain AUL54_07895 SM00862 Transcriptional regulatory protein, C terminal AUL54_07915 SM00345 helix_turn_helix gluconate operon transcriptional repressor AUL54_07925 SM00422 helix_turn_helix, mercury resistance AUL54_07930 SM00829 Enoylreductase AUL54_08005 SM00347 helix_turn_helix multiple antibiotic resistance protein AUL54_08060 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AUL54_08070 SM01058 CarD-like/TRCF domain AUL54_08075 SM00357 Cold shock protein domain AUL54_08100 SM00347 helix_turn_helix multiple antibiotic resistance protein AUL54_08155 SM00028 Tetratricopeptide repeats AUL54_08160 SM00487 DEAD-like helicases superfamily AUL54_08160 SM00490 helicase superfamily c-terminal domain AUL54_08270 SM00530 Helix-turn-helix XRE-family like proteins AUL54_08320 SM00731 SprT homologues. AUL54_08325 SM00316 Ribosomal protein S1-like RNA-binding domain AUL54_08325 SM00732 Likely ribonuclease with RNase H fold. AUL54_08330 SM00331 Sigma factor PP2C-like phosphatases AUL54_08330 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AUL54_08350 SM00331 Sigma factor PP2C-like phosphatases AUL54_08355 SM00387 Histidine kinase-like ATPases AUL54_08380 SM01005 Alanine racemase, C-terminal domain AUL54_08410 SM00487 DEAD-like helicases superfamily AUL54_08410 SM00490 helicase superfamily c-terminal domain AUL54_08455 SM00382 ATPases associated with a variety of cellular activities AUL54_08470 SM00448 cheY-homologous receiver domain AUL54_08475 SM00091 PAS domain AUL54_08475 SM00387 Histidine kinase-like ATPases AUL54_08600 SM00267 diguanylate cyclase AUL54_08610 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AUL54_08610 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AUL54_08610 SM00493 AUL54_08610 AUL54_08615 SM00344 helix_turn_helix ASNC type AUL54_08685 SM00346 helix_turn_helix isocitrate lyase regulation AUL54_08690 SM00797 Allophanate hydrolase subunit 2 AUL54_08695 SM00796 Allophanate hydrolase subunit 1 AUL54_08745 SM00420 helix_turn_helix, Deoxyribose operon repressor AUL54_08780 SM00345 helix_turn_helix gluconate operon transcriptional repressor AUL54_08785 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AUL54_08815 SM00382 ATPases associated with a variety of cellular activities AUL54_08840 SM00028 Tetratricopeptide repeats AUL54_08845 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AUL54_08845 SM00387 Histidine kinase-like ATPases AUL54_08845 SM00388 His Kinase A (phosphoacceptor) domain AUL54_08850 SM00448 cheY-homologous receiver domain AUL54_08850 SM00862 Transcriptional regulatory protein, C terminal AUL54_08860 SM00382 ATPases associated with a variety of cellular activities AUL54_08875 SM00382 ATPases associated with a variety of cellular activities AUL54_08885 SM00062 Bacterial periplasmic substrate-binding proteins AUL54_08920 SM00710 Parallel beta-helix repeats AUL54_08955 SM00062 Bacterial periplasmic substrate-binding proteins AUL54_08965 SM00382 ATPases associated with a variety of cellular activities AUL54_08990 SM00823 Phosphopantetheine attachment site AUL54_08990 SM00824 Thioesterase AUL54_08995 SM00823 Phosphopantetheine attachment site AUL54_09000 SM00823 Phosphopantetheine attachment site AUL54_09010 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AUL54_09050 SM00833 Cobalamin synthesis protein cobW C-terminal domain AUL54_09150 SM00347 helix_turn_helix multiple antibiotic resistance protein AUL54_09165 SM00632 AUL54_09165 AUL54_09165 SM00642 Alpha-amylase domain AUL54_09200 SM00116 Domain in cystathionine beta-synthase and other proteins. AUL54_09200 SM00382 ATPases associated with a variety of cellular activities AUL54_09250 SM00382 ATPases associated with a variety of cellular activities AUL54_09260 SM00642 Alpha-amylase domain AUL54_09275 SM00028 Tetratricopeptide repeats AUL54_09315 SM00870 AUL54_09315 AUL54_09390 SM00448 cheY-homologous receiver domain AUL54_09395 SM00387 Histidine kinase-like ATPases AUL54_09430 SM00450 Rhodanese Homology Domain AUL54_09465 SM00530 Helix-turn-helix XRE-family like proteins AUL54_09565 SM00382 ATPases associated with a variety of cellular activities AUL54_09570 SM00421 helix_turn_helix, Lux Regulon AUL54_09570 SM00448 cheY-homologous receiver domain AUL54_09590 SM00347 helix_turn_helix multiple antibiotic resistance protein AUL54_09720 SM00342 helix_turn_helix, arabinose operon control protein AUL54_09755 SM00829 Enoylreductase AUL54_09835 SM01251 AUL54_09835 AUL54_09850 SM00646 AUL54_09850 AUL54_09890 SM00382 ATPases associated with a variety of cellular activities AUL54_09895 SM00382 ATPases associated with a variety of cellular activities AUL54_09905 SM00662 RNA polymerases D AUL54_09925 SM00316 Ribosomal protein S1-like RNA-binding domain AUL54_09980 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AUL54_09985 SM01374 AUL54_09985 AUL54_10005 SM00322 K homology RNA-binding domain AUL54_10020 SM01382 AUL54_10020 AUL54_10020 SM01383 AUL54_10020 AUL54_10040 SM01403 AUL54_10040 AUL54_10055 SM00838 Elongation factor G C-terminus AUL54_10055 SM00889 Elongation factor G, domain IV AUL54_10075 SM00663 RNA polymerase I subunit A N-terminus AUL54_10105 SM00649 Ribosomal protein L11/L12 AUL54_10110 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AUL54_10110 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AUL54_10135 SM00967 RNA 2'-O ribose methyltransferase substrate binding AUL54_10140 SM00535 Ribonuclease III family AUL54_10145 SM00840 AUL54_10145 AUL54_10170 SM00670 Large family of predicted nucleotide-binding domains AUL54_10180 SM00382 ATPases associated with a variety of cellular activities AUL54_10185 SM00382 ATPases associated with a variety of cellular activities AUL54_10185 SM01086 C-terminal, D2-small domain, of ClpB protein AUL54_10290 SM00530 Helix-turn-helix XRE-family like proteins AUL54_10300 SM00905 Dihydroneopterin aldolase AUL54_10345 SM00382 ATPases associated with a variety of cellular activities AUL54_10355 SM00977 TilS substrate C-terminal domain AUL54_10360 SM00220 Serine/Threonine protein kinases, catalytic domain AUL54_10370 SM00331 Sigma factor PP2C-like phosphatases AUL54_10370 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AUL54_10385 SM00316 Ribosomal protein S1-like RNA-binding domain AUL54_10405 SM00363 S4 RNA-binding domain AUL54_10420 SM00966 SpoVT / AbrB like domain AUL54_10425 SM00487 DEAD-like helicases superfamily AUL54_10425 SM00490 helicase superfamily c-terminal domain AUL54_10425 SM00982 AUL54_10425 AUL54_10425 SM01058 CarD-like/TRCF domain AUL54_10445 SM01400 AUL54_10445 AUL54_10490 SM00650 Ribosomal RNA adenine dimethylases AUL54_10495 SM00493 AUL54_10495 AUL54_10500 SM01208 AUL54_10500 AUL54_10515 SM00966 SpoVT / AbrB like domain AUL54_10525 SM00465 GIY-YIG type nucleases (URI domain) AUL54_10620 SM00493 AUL54_10620 AUL54_10630 SM00382 ATPases associated with a variety of cellular activities AUL54_10655 SM00257 Lysin motif AUL54_10655 SM00636 AUL54_10655 AUL54_10695 SM00936 Penicillin-binding protein 5, C-terminal domain AUL54_10700 SM00116 Domain in cystathionine beta-synthase and other proteins. AUL54_10700 SM01240 AUL54_10700 AUL54_10735 SM00434 DNA Topoisomerase IV AUL54_10740 SM00387 Histidine kinase-like ATPases AUL54_10740 SM00433 TopoisomeraseII AUL54_10760 SM00480 DNA polymerase III beta subunit AUL54_10765 SM00382 ATPases associated with a variety of cellular activities AUL54_10765 SM00760 Bacterial dnaA protein helix-turn-helix domain AUL54_10780 SM00393 Putative single-stranded nucleic acids-binding domain AUL54_10780 SM01245 AUL54_10780 AUL54_10790 SM01228 AUL54_10790 AUL54_10800 SM00470 ParB-like nuclease domain AUL54_10810 SM00470 ParB-like nuclease domain AUL54_10835 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AUL54_10860 SM00342 helix_turn_helix, arabinose operon control protein AUL54_10875 SM00354 helix_turn _helix lactose operon repressor AUL54_10910 SM00382 ATPases associated with a variety of cellular activities AUL54_10950 SM00345 helix_turn_helix gluconate operon transcriptional repressor AUL54_10960 SM00347 helix_turn_helix multiple antibiotic resistance protein AUL54_10970 SM00347 helix_turn_helix multiple antibiotic resistance protein AUL54_11000 SM00345 helix_turn_helix gluconate operon transcriptional repressor AUL54_11000 SM00895 AUL54_11000 AUL54_11005 SM00640 Glycosyl hydrolases family 32 AUL54_11020 SM01131 AUL54_11020 AUL54_11040 SM00267 diguanylate cyclase AUL54_11090 SM00382 ATPases associated with a variety of cellular activities AUL54_11100 SM00788 Adenylosuccinate synthetase AUL54_11130 SM00448 cheY-homologous receiver domain AUL54_11130 SM00862 Transcriptional regulatory protein, C terminal AUL54_11135 SM00091 PAS domain AUL54_11135 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AUL54_11135 SM00387 Histidine kinase-like ATPases AUL54_11135 SM00388 His Kinase A (phosphoacceptor) domain AUL54_11150 SM00849 Metallo-beta-lactamase superfamily AUL54_11155 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AUL54_11165 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AUL54_11165 SM00387 Histidine kinase-like ATPases AUL54_11165 SM00388 His Kinase A (phosphoacceptor) domain AUL54_11170 SM00382 ATPases associated with a variety of cellular activities AUL54_11175 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AUL54_11200 SM00028 Tetratricopeptide repeats AUL54_11275 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AUL54_11280 SM01092 CO dehydrogenase flavoprotein C-terminal domain AUL54_11325 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AUL54_11335 SM00564 beta-propeller repeat AUL54_11360 SM00421 helix_turn_helix, Lux Regulon AUL54_11360 SM00448 cheY-homologous receiver domain AUL54_11375 SM00387 Histidine kinase-like ATPases AUL54_11390 SM00420 helix_turn_helix, Deoxyribose operon repressor AUL54_11390 SM01134 AUL54_11390 AUL54_11440 SM00448 cheY-homologous receiver domain AUL54_11440 SM00862 Transcriptional regulatory protein, C terminal AUL54_11445 SM00387 Histidine kinase-like ATPases AUL54_11450 SM00382 ATPases associated with a variety of cellular activities AUL54_11505 SM01133 AUL54_11505 AUL54_11515 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain AUL54_11525 SM00901 AUL54_11525 AUL54_11555 SM00656 AUL54_11555 AUL54_11640 SM00487 DEAD-like helicases superfamily AUL54_11640 SM00490 helicase superfamily c-terminal domain AUL54_11650 SM01061 CAT RNA binding domain AUL54_11665 SM01060 AUL54_11665 AUL54_11725 SM00382 ATPases associated with a variety of cellular activities AUL54_11750 SM00382 ATPases associated with a variety of cellular activities AUL54_11755 SM00382 ATPases associated with a variety of cellular activities AUL54_11775 SM01060 AUL54_11775 AUL54_11785 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AUL54_11840 SM00091 PAS domain AUL54_11840 SM00382 ATPases associated with a variety of cellular activities AUL54_11900 SM00954 Region found in RelA / SpoT proteins AUL54_11925 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AUL54_12075 SM01061 CAT RNA binding domain AUL54_12085 SM00640 Glycosyl hydrolases family 32 AUL54_12120 SM00986 Uracil DNA glycosylase superfamily AUL54_12120 SM00987 UreE urease accessory protein, C-terminal domain AUL54_12165 SM00858 AUL54_12165 AUL54_12200 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AUL54_12315 SM00382 ATPases associated with a variety of cellular activities AUL54_12340 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AUL54_12355 SM00347 helix_turn_helix multiple antibiotic resistance protein AUL54_12395 SM00028 Tetratricopeptide repeats AUL54_12405 SM00836 DALR anticodon binding domain AUL54_12405 SM01016 Arginyl tRNA synthetase N terminal dom AUL54_12415 SM00100 Cyclic nucleotide-monophosphate binding domain AUL54_12415 SM00419 helix_turn_helix, cAMP Regulatory protein AUL54_12430 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AUL54_12455 SM00155 Phospholipase D. Active site motifs. AUL54_12460 SM00382 ATPases associated with a variety of cellular activities AUL54_12475 SM00155 Phospholipase D. Active site motifs. AUL54_12500 SM00448 cheY-homologous receiver domain AUL54_12530 SM00357 Cold shock protein domain AUL54_12530 SM00382 ATPases associated with a variety of cellular activities AUL54_12530 SM00959 Rho termination factor, N-terminal domain AUL54_12545 SM00919 Malic enzyme, NAD binding domain AUL54_12545 SM01274 AUL54_12545 AUL54_12565 SM00937 AUL54_12565 AUL54_12605 SM00226 Low molecular weight phosphatase family AUL54_12665 SM00382 ATPases associated with a variety of cellular activities AUL54_12700 SM00327 von Willebrand factor (vWF) type A domain AUL54_12705 SM00327 von Willebrand factor (vWF) type A domain AUL54_12715 SM00729 Elongator protein 3, MiaB family, Radical SAM AUL54_12720 SM00028 Tetratricopeptide repeats AUL54_12765 SM00155 Phospholipase D. Active site motifs. AUL54_12795 SM00014 Acid phosphatase homologues AUL54_12805 SM00938 Nitrogen regulatory protein P-II AUL54_12835 SM00347 helix_turn_helix multiple antibiotic resistance protein AUL54_12860 SM00028 Tetratricopeptide repeats AUL54_12890 SM00420 helix_turn_helix, Deoxyribose operon repressor AUL54_12890 SM01134 AUL54_12890 AUL54_12900 SM00487 DEAD-like helicases superfamily AUL54_12900 SM00490 helicase superfamily c-terminal domain AUL54_12930 SM00984 UDP binding domain AUL54_12975 SM00344 helix_turn_helix ASNC type AUL54_12990 SM00903 Flavin reductase like domain AUL54_13040 SM00287 Bacterial SH3 domain homologues AUL54_13055 SM00382 ATPases associated with a variety of cellular activities AUL54_13070 SM00354 helix_turn _helix lactose operon repressor AUL54_13090 SM00854 Bacterial capsule synthesis protein PGA_cap AUL54_13145 SM00047 Lysozyme subfamily 2 AUL54_13145 SM00287 Bacterial SH3 domain homologues AUL54_13180 SM00382 ATPases associated with a variety of cellular activities AUL54_13210 SM00646 AUL54_13210 AUL54_13230 SM00984 UDP binding domain AUL54_13270 SM00387 Histidine kinase-like ATPases AUL54_13275 SM00421 helix_turn_helix, Lux Regulon AUL54_13275 SM00448 cheY-homologous receiver domain AUL54_13285 SM00487 DEAD-like helicases superfamily AUL54_13285 SM00490 helicase superfamily c-terminal domain AUL54_13370 SM00957 SecA DEAD-like domain AUL54_13370 SM00958 SecA preprotein cross-linking domain AUL54_13375 SM00937 AUL54_13375 AUL54_13390 SM00382 ATPases associated with a variety of cellular activities AUL54_13400 SM00710 Parallel beta-helix repeats AUL54_13400 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses AUL54_13405 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AUL54_13405 SM00245 tail specific protease AUL54_13415 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AUL54_13445 SM00487 DEAD-like helicases superfamily AUL54_13445 SM00490 helicase superfamily c-terminal domain AUL54_13450 SM00382 ATPases associated with a variety of cellular activities AUL54_13490 SM00345 helix_turn_helix gluconate operon transcriptional repressor AUL54_13490 SM00866 AUL54_13490 AUL54_13570 SM00382 ATPases associated with a variety of cellular activities AUL54_13580 SM00448 cheY-homologous receiver domain AUL54_13580 SM00862 Transcriptional regulatory protein, C terminal AUL54_13585 SM00387 Histidine kinase-like ATPases AUL54_13585 SM00388 His Kinase A (phosphoacceptor) domain AUL54_13590 SM00028 Tetratricopeptide repeats AUL54_13650 SM00947 Carbonic anhydrase AUL54_13695 SM00354 helix_turn _helix lactose operon repressor AUL54_13705 SM00640 Glycosyl hydrolases family 32 AUL54_13795 SM00530 Helix-turn-helix XRE-family like proteins AUL54_13890 SM00345 helix_turn_helix gluconate operon transcriptional repressor AUL54_13890 SM00895 AUL54_13890 AUL54_13965 SM00345 helix_turn_helix gluconate operon transcriptional repressor AUL54_13980 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AUL54_14000 SM01192 AUL54_14000 AUL54_14000 SM01193 AUL54_14000 AUL54_14035 SM00116 Domain in cystathionine beta-synthase and other proteins. AUL54_14035 SM00382 ATPases associated with a variety of cellular activities AUL54_14060 SM00116 Domain in cystathionine beta-synthase and other proteins. AUL54_14060 SM00382 ATPases associated with a variety of cellular activities AUL54_14080 SM00382 ATPases associated with a variety of cellular activities AUL54_14095 SM00448 cheY-homologous receiver domain AUL54_14095 SM00862 Transcriptional regulatory protein, C terminal AUL54_14100 SM00387 Histidine kinase-like ATPases AUL54_14100 SM00388 His Kinase A (phosphoacceptor) domain AUL54_14110 SM00530 Helix-turn-helix XRE-family like proteins AUL54_14115 SM00530 Helix-turn-helix XRE-family like proteins AUL54_14120 SM00530 Helix-turn-helix XRE-family like proteins AUL54_14135 SM00316 Ribosomal protein S1-like RNA-binding domain AUL54_14135 SM00357 Cold shock protein domain AUL54_14135 SM00955 AUL54_14135 AUL54_14190 SM00062 Bacterial periplasmic substrate-binding proteins AUL54_14195 SM00062 Bacterial periplasmic substrate-binding proteins AUL54_14210 SM00382 ATPases associated with a variety of cellular activities AUL54_14245 SM00530 Helix-turn-helix XRE-family like proteins AUL54_14340 SM00382 ATPases associated with a variety of cellular activities AUL54_14350 SM00421 helix_turn_helix, Lux Regulon AUL54_14350 SM00448 cheY-homologous receiver domain AUL54_14410 SM00382 ATPases associated with a variety of cellular activities AUL54_14420 SM00835 Cupin AUL54_14435 SM00448 cheY-homologous receiver domain AUL54_14435 SM00862 Transcriptional regulatory protein, C terminal AUL54_14440 SM00387 Histidine kinase-like ATPases AUL54_14440 SM00388 His Kinase A (phosphoacceptor) domain AUL54_14465 SM00382 ATPases associated with a variety of cellular activities AUL54_14500 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AUL54_14500 SM00387 Histidine kinase-like ATPases AUL54_14505 SM00421 helix_turn_helix, Lux Regulon AUL54_14505 SM00448 cheY-homologous receiver domain AUL54_14540 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AUL54_14540 SM00387 Histidine kinase-like ATPases AUL54_14540 SM00388 His Kinase A (phosphoacceptor) domain AUL54_14545 SM00448 cheY-homologous receiver domain AUL54_14545 SM00862 Transcriptional regulatory protein, C terminal AUL54_14550 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AUL54_14575 SM00382 ATPases associated with a variety of cellular activities AUL54_14605 SM00347 helix_turn_helix multiple antibiotic resistance protein AUL54_14605 SM00529 Helix-turn-helix diphteria tox regulatory element AUL54_14660 SM00493 AUL54_14660 AUL54_14675 SM00382 ATPases associated with a variety of cellular activities AUL54_14675 SM00930 AUL54_14675 AUL54_14695 SM00382 ATPases associated with a variety of cellular activities AUL54_14735 SM00257 Lysin motif AUL54_14805 SM00465 GIY-YIG type nucleases (URI domain) AUL54_14820 SM00752 Horizontally Transferred TransMembrane Domain AUL54_14830 SM00422 helix_turn_helix, mercury resistance AUL54_14860 SM00345 helix_turn_helix gluconate operon transcriptional repressor AUL54_14860 SM00866 AUL54_14860 AUL54_14865 SM00382 ATPases associated with a variety of cellular activities AUL54_14870 SM00382 ATPases associated with a variety of cellular activities AUL54_14880 SM00062 Bacterial periplasmic substrate-binding proteins AUL54_14920 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AUL54_14995 SM00729 Elongator protein 3, MiaB family, Radical SAM AUL54_15105 SM00382 ATPases associated with a variety of cellular activities AUL54_15120 SM01240 AUL54_15120 AUL54_15180 SM00822 AUL54_15180 AUL54_15200 SM00823 Phosphopantetheine attachment site AUL54_15200 SM00824 Thioesterase AUL54_15205 SM00923 MbtH-like protein AUL54_15215 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AUL54_15215 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AUL54_15260 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AUL54_15300 SM00052 Putative diguanylate phosphodiesterase AUL54_15325 SM00387 Histidine kinase-like ATPases AUL54_15330 SM00421 helix_turn_helix, Lux Regulon AUL54_15330 SM00448 cheY-homologous receiver domain AUL54_15390 SM00382 ATPases associated with a variety of cellular activities AUL54_15400 SM00448 cheY-homologous receiver domain AUL54_15405 SM00091 PAS domain AUL54_15405 SM00387 Histidine kinase-like ATPases AUL54_15430 SM00479 AUL54_15430 AUL54_15435 SM01298 AUL54_15435 AUL54_15440 SM00387 Histidine kinase-like ATPases AUL54_15440 SM00388 His Kinase A (phosphoacceptor) domain AUL54_15460 SM00344 helix_turn_helix ASNC type AUL54_15470 SM00316 Ribosomal protein S1-like RNA-binding domain AUL54_15535 SM01091 Transporter associated domain AUL54_15540 SM00642 Alpha-amylase domain AUL54_15565 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AUL54_15565 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AUL54_15565 SM00319 Homologues of the ligand binding domain of Tar AUL54_15570 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AUL54_15570 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AUL54_15570 SM00319 Homologues of the ligand binding domain of Tar AUL54_15575 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AUL54_15575 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AUL54_15575 SM00319 Homologues of the ligand binding domain of Tar AUL54_15580 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AUL54_15580 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AUL54_15580 SM00319 Homologues of the ligand binding domain of Tar AUL54_15620 SM00028 Tetratricopeptide repeats AUL54_15635 SM00835 Cupin AUL54_15645 SM00047 Lysozyme subfamily 2 AUL54_15855 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AUL54_15880 SM00947 Carbonic anhydrase AUL54_15885 SM01234 AUL54_15885 AUL54_15925 SM00382 ATPases associated with a variety of cellular activities AUL54_15995 SM00729 Elongator protein 3, MiaB family, Radical SAM AUL54_16005 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AUL54_16015 SM00345 helix_turn_helix gluconate operon transcriptional repressor AUL54_16020 SM00382 ATPases associated with a variety of cellular activities AUL54_16040 SM00382 ATPases associated with a variety of cellular activities AUL54_16050 SM00448 cheY-homologous receiver domain AUL54_16050 SM00862 Transcriptional regulatory protein, C terminal AUL54_16055 SM00387 Histidine kinase-like ATPases AUL54_16060 SM00382 ATPases associated with a variety of cellular activities AUL54_16080 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AUL54_16080 SM00091 PAS domain AUL54_16095 SM00450 Rhodanese Homology Domain AUL54_16130 SM00363 S4 RNA-binding domain AUL54_16135 SM00420 helix_turn_helix, Deoxyribose operon repressor AUL54_16140 SM00382 ATPases associated with a variety of cellular activities AUL54_16175 SM00046 Diacylglycerol kinase catalytic domain (presumed) AUL54_16195 SM00849 Metallo-beta-lactamase superfamily AUL54_16200 SM00919 Malic enzyme, NAD binding domain AUL54_16200 SM01274 AUL54_16200 AUL54_16220 SM00155 Phospholipase D. Active site motifs. AUL54_16290 SM00857 Resolvase, N terminal domain AUL54_16340 SM00382 ATPases associated with a variety of cellular activities AUL54_16340 SM00843 AUL54_16340 AUL54_16365 SM00830 Chorismate mutase type II AUL54_16370 SM00354 helix_turn _helix lactose operon repressor AUL54_16390 SM00116 Domain in cystathionine beta-synthase and other proteins. AUL54_16405 SM00363 S4 RNA-binding domain AUL54_16475 SM00860 SMI1 / KNR4 family AUL54_16485 SM00363 S4 RNA-binding domain AUL54_16485 SM01390 AUL54_16485 AUL54_16490 SM00267 diguanylate cyclase AUL54_16525 SM00981 AUL54_16525 AUL54_16585 SM00852 Probable molybdopterin binding domain AUL54_16605 SM00849 Metallo-beta-lactamase superfamily AUL54_16610 SM00116 Domain in cystathionine beta-synthase and other proteins. AUL54_16640 SM00481 DNA polymerase alpha chain like domain AUL54_16645 SM00919 Malic enzyme, NAD binding domain AUL54_16645 SM01274 AUL54_16645 AUL54_16690 SM01329 AUL54_16690 AUL54_16700 SM00448 cheY-homologous receiver domain AUL54_16700 SM00862 Transcriptional regulatory protein, C terminal AUL54_16705 SM00091 PAS domain AUL54_16705 SM00387 Histidine kinase-like ATPases AUL54_16705 SM00388 His Kinase A (phosphoacceptor) domain AUL54_16710 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AUL54_16710 SM00474 3'-5' exonuclease AUL54_16710 SM00475 5'-3' exonuclease AUL54_16710 SM00482 DNA polymerase A domain AUL54_16715 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AUL54_16715 SM01232 AUL54_16715 AUL54_16745 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AUL54_16765 SM00382 ATPases associated with a variety of cellular activities AUL54_16780 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AUL54_16790 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AUL54_16790 SM00387 Histidine kinase-like ATPases AUL54_16795 SM00448 cheY-homologous receiver domain AUL54_16795 SM00850 LytTr DNA-binding domain AUL54_16855 SM01007 Class II Aldolase and Adducin N-terminal domain AUL54_16885 SM00813 Alpha-L-arabinofuranosidase C-terminus AUL54_16915 SM00967 RNA 2'-O ribose methyltransferase substrate binding AUL54_16925 SM00873 B3/4 domain AUL54_16925 SM00874 tRNA synthetase B5 domain AUL54_16925 SM00896 Ferredoxin-fold anticodon binding domain AUL54_16945 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AUL54_16945 SM00481 DNA polymerase alpha chain like domain AUL54_16945 SM00483 DNA polymerase X family AUL54_16950 SM00463 Small MutS-related domain AUL54_16950 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AUL54_16950 SM00534 ATPase domain of DNA mismatch repair MUTS family AUL54_16980 SM00893 Electron transfer flavoprotein domain AUL54_16985 SM00893 Electron transfer flavoprotein domain AUL54_16990 SM00813 Alpha-L-arabinofuranosidase C-terminus AUL54_17000 SM00465 GIY-YIG type nucleases (URI domain) AUL54_17035 SM00421 helix_turn_helix, Lux Regulon AUL54_17040 SM00347 helix_turn_helix multiple antibiotic resistance protein AUL54_17050 SM00909 Sporulation and spore germination AUL54_17085 SM00487 DEAD-like helicases superfamily AUL54_17085 SM00490 helicase superfamily c-terminal domain AUL54_17145 SM00917 LeuA allosteric (dimerisation) domain AUL54_17150 SM01329 AUL54_17150 AUL54_17175 SM00382 ATPases associated with a variety of cellular activities AUL54_17175 SM00994 ClpX C4-type zinc finger AUL54_17175 SM01086 C-terminal, D2-small domain, of ClpB protein AUL54_17180 SM00382 ATPases associated with a variety of cellular activities AUL54_17185 SM00382 ATPases associated with a variety of cellular activities AUL54_17185 SM00464 Found in ATP-dependent protease La (LON) AUL54_17220 SM01004 Delta-aminolevulinic acid dehydratase AUL54_17230 SM00257 Lysin motif AUL54_17325 SM01317 AUL54_17325 AUL54_17370 SM00257 Lysin motif AUL54_17385 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AUL54_17390 SM00382 ATPases associated with a variety of cellular activities AUL54_17410 SM01323 AUL54_17410 AUL54_17460 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AUL54_17460 SM00954 Region found in RelA / SpoT proteins AUL54_17470 SM00287 Bacterial SH3 domain homologues AUL54_17470 SM00646 AUL54_17470 AUL54_17495 SM00382 ATPases associated with a variety of cellular activities AUL54_17515 SM00028 Tetratricopeptide repeats AUL54_17520 SM00382 ATPases associated with a variety of cellular activities AUL54_17545 SM00062 Bacterial periplasmic substrate-binding proteins AUL54_17545 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AUL54_17550 SM00382 ATPases associated with a variety of cellular activities AUL54_17560 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AUL54_17570 SM00732 Likely ribonuclease with RNase H fold. AUL54_17655 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AUL54_17655 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AUL54_17695 SM00849 Metallo-beta-lactamase superfamily AUL54_17745 SM00342 helix_turn_helix, arabinose operon control protein AUL54_17745 SM00871 Bacterial transcription activator, effector binding domain AUL54_17795 SM00422 helix_turn_helix, mercury resistance AUL54_17885 SM01103 AUL54_17885 AUL54_17895 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AUL54_17915 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AUL54_17925 SM00849 Metallo-beta-lactamase superfamily AUL54_17955 SM00838 Elongation factor G C-terminus AUL54_17960 SM00729 Elongator protein 3, MiaB family, Radical SAM AUL54_17980 SM00271 DnaJ molecular chaperone homology domain AUL54_17995 SM00729 Elongator protein 3, MiaB family, Radical SAM AUL54_18045 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AUL54_18085 SM00116 Domain in cystathionine beta-synthase and other proteins. AUL54_18100 SM00400 zinc finger AUL54_18100 SM00493 AUL54_18100 AUL54_18135 SM00487 DEAD-like helicases superfamily AUL54_18135 SM00490 helicase superfamily c-terminal domain AUL54_18140 SM00518 AP endonuclease family 2 AUL54_18175 SM00257 Lysin motif AUL54_18220 SM00382 ATPases associated with a variety of cellular activities AUL54_18225 SM00382 ATPases associated with a variety of cellular activities AUL54_18260 SM00631 AUL54_18260 AUL54_18275 SM00849 Metallo-beta-lactamase superfamily AUL54_18300 SM01091 Transporter associated domain AUL54_18310 SM00382 ATPases associated with a variety of cellular activities AUL54_18370 SM00530 Helix-turn-helix XRE-family like proteins AUL54_18385 SM00487 DEAD-like helicases superfamily AUL54_18385 SM00490 helicase superfamily c-terminal domain AUL54_18405 SM00450 Rhodanese Homology Domain AUL54_18415 SM00529 Helix-turn-helix diphteria tox regulatory element AUL54_18445 SM00841 Elongation factor P, C-terminal AUL54_18445 SM01185 AUL54_18445 AUL54_18455 SM00382 ATPases associated with a variety of cellular activities AUL54_18500 SM00878 Biotin carboxylase C-terminal domain AUL54_18535 SM00861 Transketolase, pyrimidine binding domain AUL54_18540 SM00363 S4 RNA-binding domain AUL54_18555 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AUL54_18560 SM00448 cheY-homologous receiver domain AUL54_18565 SM01005 Alanine racemase, C-terminal domain AUL54_18590 SM00530 Helix-turn-helix XRE-family like proteins AUL54_18605 SM00646 AUL54_18605 AUL54_18650 SM00091 PAS domain AUL54_18650 SM00382 ATPases associated with a variety of cellular activities AUL54_18660 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AUL54_18680 SM00861 Transketolase, pyrimidine binding domain AUL54_18690 SM00046 Diacylglycerol kinase catalytic domain (presumed) AUL54_18700 SM00062 Bacterial periplasmic substrate-binding proteins AUL54_18700 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AUL54_18710 SM00382 ATPases associated with a variety of cellular activities AUL54_18755 SM01350 AUL54_18755 AUL54_18780 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AUL54_18785 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AUL54_18810 SM00822 AUL54_18810 AUL54_18810 SM00823 Phosphopantetheine attachment site AUL54_18810 SM00825 Beta-ketoacyl synthase AUL54_18810 SM00826 AUL54_18810 AUL54_18810 SM01294 AUL54_18810 AUL54_18815 SM00822 AUL54_18815 AUL54_18815 SM00823 Phosphopantetheine attachment site AUL54_18815 SM00825 Beta-ketoacyl synthase AUL54_18815 SM01294 AUL54_18815 AUL54_18820 SM00822 AUL54_18820 AUL54_18820 SM00823 Phosphopantetheine attachment site AUL54_18820 SM00825 Beta-ketoacyl synthase AUL54_18820 SM00826 AUL54_18820 AUL54_18820 SM01294 AUL54_18820 AUL54_18825 SM00822 AUL54_18825 AUL54_18825 SM00823 Phosphopantetheine attachment site AUL54_18825 SM00825 Beta-ketoacyl synthase AUL54_18825 SM00826 AUL54_18825 AUL54_18825 SM01294 AUL54_18825 AUL54_18830 SM00822 AUL54_18830 AUL54_18830 SM00823 Phosphopantetheine attachment site AUL54_18830 SM00825 Beta-ketoacyl synthase AUL54_18830 SM01294 AUL54_18830 AUL54_18835 SM00822 AUL54_18835 AUL54_18835 SM00823 Phosphopantetheine attachment site AUL54_18835 SM00825 Beta-ketoacyl synthase AUL54_18835 SM00826 AUL54_18835 AUL54_18840 SM00823 Phosphopantetheine attachment site AUL54_18840 SM00825 Beta-ketoacyl synthase AUL54_18840 SM00829 Enoylreductase AUL54_18840 SM01294 AUL54_18840 AUL54_18865 SM00849 Metallo-beta-lactamase superfamily AUL54_18970 SM00530 Helix-turn-helix XRE-family like proteins AUL54_18975 SM00870 AUL54_18975 AUL54_18990 SM00919 Malic enzyme, NAD binding domain AUL54_18990 SM01274 AUL54_18990 AUL54_19035 SM00936 Penicillin-binding protein 5, C-terminal domain AUL54_19045 SM00387 Histidine kinase-like ATPases AUL54_19180 SM00363 S4 RNA-binding domain AUL54_19200 SM00448 cheY-homologous receiver domain AUL54_19200 SM00862 Transcriptional regulatory protein, C terminal AUL54_19205 SM00091 PAS domain AUL54_19205 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AUL54_19205 SM00387 Histidine kinase-like ATPases AUL54_19205 SM00388 His Kinase A (phosphoacceptor) domain AUL54_19240 SM00487 DEAD-like helicases superfamily AUL54_19240 SM00490 helicase superfamily c-terminal domain AUL54_19250 SM00257 Lysin motif AUL54_19270 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AUL54_19305 SM00316 Ribosomal protein S1-like RNA-binding domain AUL54_19345 SM00411 bacterial (prokaryotic) histone like domain AUL54_19375 SM00562 AUL54_19375 AUL54_19380 SM00138 Methyltransferase, chemotaxis proteins AUL54_19445 SM00028 Tetratricopeptide repeats AUL54_19450 SM00914 AUL54_19450 AUL54_19485 SM00835 Cupin AUL54_19505 SM00851 MGS-like domain AUL54_19545 SM00479 AUL54_19545 AUL54_19545 SM00487 DEAD-like helicases superfamily AUL54_19545 SM00491 AUL54_19545 AUL54_19570 SM00478 endonuclease III AUL54_19570 SM00525 AUL54_19570 AUL54_19580 SM00060 Fibronectin type 3 domain AUL54_19630 SM00487 DEAD-like helicases superfamily AUL54_19630 SM00490 helicase superfamily c-terminal domain AUL54_19655 SM00981 AUL54_19655 AUL54_19665 SM00491 AUL54_19665 AUL54_19685 SM00857 Resolvase, N terminal domain AUL54_19690 SM00318 Staphylococcal nuclease homologues AUL54_19690 SM00894 Excalibur calcium-binding domain AUL54_19695 SM00860 SMI1 / KNR4 family AUL54_19710 SM00860 SMI1 / KNR4 family AUL54_19745 SM00028 Tetratricopeptide repeats AUL54_19770 SM00644 AUL54_19770 AUL54_19775 SM00710 Parallel beta-helix repeats AUL54_19950 SM00411 bacterial (prokaryotic) histone like domain AUL54_19975 SM00864 Tubulin/FtsZ family, GTPase domain AUL54_20165 SM00530 Helix-turn-helix XRE-family like proteins AUL54_20220 SM00507 HNH nucleases AUL54_20265 SM00710 Parallel beta-helix repeats