locus-tag class description JI729_00005 PF11638 DnaA N-terminal domain JI729_00005 PF00308 Bacterial dnaA protein JI729_00005 PF08299 Bacterial dnaA protein helix-turn-helix JI729_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain JI729_00010 PF02767 DNA polymerase III beta subunit, central domain JI729_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain JI729_00020 PF02463 RecF/RecN/SMC N terminal domain JI729_00025 PF01751 Toprim domain JI729_00025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_00025 PF00204 DNA gyrase B JI729_00025 PF00986 DNA gyrase B subunit, carboxyl terminus JI729_00030 PF00521 DNA gyrase/topoisomerase IV, subunit A JI729_00030 PF03989 DNA gyrase C-terminal domain, beta-propeller JI729_00060 PF14175 YaaC-like Protein JI729_00065 PF00571 CBS domain JI729_00065 PF00478 IMP dehydrogenase / GMP reductase domain JI729_00070 PF00768 D-alanyl-D-alanine carboxypeptidase JI729_00070 PF07943 Penicillin-binding protein 5, C-terminal domain JI729_00075 PF01680 SOR/SNZ family JI729_00080 PF01174 SNO glutamine amidotransferase family JI729_00085 PF02403 Seryl-tRNA synthetase N-terminal domain JI729_00085 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JI729_00100 PF01712 Deoxynucleoside kinase JI729_00105 PF01712 Deoxynucleoside kinase JI729_00110 PF00857 Isochorismatase family JI729_00115 PF14437 MafB19-like deaminase JI729_00125 PF12169 DNA polymerase III subunits gamma and tau domain III JI729_00130 PF02575 YbaB/EbfC DNA-binding family JI729_00135 PF13662 Toprim domain JI729_00135 PF02132 RecR protein JI729_00140 PF10704 Protein of unknown function (DUF2508) JI729_00145 PF07441 SigmaK-factor processing regulatory protein BofA JI729_00180 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain JI729_00180 PF01276 Orn/Lys/Arg decarboxylase, major domain JI729_00185 PF02223 Thymidylate kinase JI729_00190 PF09115 DNA polymerase III, delta subunit, C terminal JI729_00195 PF04468 PSP1 C-terminal conserved region JI729_00200 PF06156 Initiation control protein YabA JI729_00205 PF05175 Methyltransferase small domain JI729_00210 PF01541 GIY-YIG catalytic domain JI729_00215 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JI729_00220 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin JI729_00220 PF18277 AbrB C-terminal domain JI729_00225 PF08264 Anticodon-binding domain of tRNA JI729_00225 PF01588 Putative tRNA binding domain JI729_00225 PF09334 tRNA synthetases class I (M) JI729_00230 PF01026 TatD related DNase JI729_00235 PF13331 Domain of unknown function (DUF4093) JI729_00235 PF13662 Toprim domain JI729_00240 PF00398 Ribosomal RNA adenine dimethylase JI729_00245 PF05582 YabG peptidase U57 JI729_00250 PF06257 Biofilm formation stimulator VEG JI729_00255 PF00269 Small, acid-soluble spore proteins, alpha/beta type JI729_00260 PF08544 GHMP kinases C terminal JI729_00260 PF00288 GHMP kinases N terminal domain JI729_00265 PF09182 Bacterial purine repressor, N-terminal JI729_00265 PF00156 Phosphoribosyl transferase domain JI729_00270 PF01042 Endoribonuclease L-PSP JI729_00275 PF04026 SpoVG JI729_00280 PF00132 Bacterial transferase hexapeptide (six repeats) JI729_00280 PF00483 Nucleotidyl transferase JI729_00285 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase JI729_00285 PF14572 Phosphoribosyl synthetase-associated domain JI729_00290 PF01195 Peptidyl-tRNA hydrolase JI729_00300 PF00270 DEAD/DEAH box helicase JI729_00300 PF17757 UvrB interaction domain JI729_00300 PF03461 TRCF domain JI729_00300 PF00271 Helicase conserved C-terminal domain JI729_00300 PF02559 CarD-like/TRCF domain JI729_00305 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin JI729_00305 PF15714 Stage V sporulation protein T C-terminal, transcription factor JI729_00310 PF01943 Polysaccharide biosynthesis protein JI729_00310 PF14667 Polysaccharide biosynthesis C-terminal domain JI729_00315 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JI729_00315 PF03819 MazG nucleotide pyrophosphohydrolase domain JI729_00320 PF01479 S4 domain JI729_00325 PF07873 YabP family JI729_00330 PF09578 Spore cortex protein YabQ (Spore_YabQ) JI729_00340 PF00575 S1 RNA binding domain JI729_00355 PF07228 Stage II sporulation protein E (SpoIIE) JI729_00360 PF01171 PP-loop family JI729_00360 PF11734 TilS substrate C-terminal domain JI729_00360 PF09179 TilS substrate binding domain JI729_00365 PF00156 Phosphoribosyl transferase domain JI729_00370 PF06480 FtsH Extracellular JI729_00370 PF01434 Peptidase family M41 JI729_00370 PF00004 ATPase family associated with various cellular activities (AAA) JI729_00370 PF17862 AAA+ lid domain JI729_00375 PF03309 Type III pantothenate kinase JI729_00380 PF01430 Hsp33 protein JI729_00385 PF00291 Pyridoxal-phosphate dependent enzyme JI729_00390 PF00425 chorismate binding enzyme JI729_00390 PF04715 Anthranilate synthase component I, N terminal region JI729_00395 PF00117 Glutamine amidotransferase class-I JI729_00400 PF01063 Amino-transferase class IV JI729_00405 PF00809 Pterin binding enzyme JI729_00410 PF02152 Dihydroneopterin aldolase JI729_00415 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) JI729_00420 PF01381 Helix-turn-helix JI729_00425 PF01207 Dihydrouridine synthase (Dus) JI729_00430 PF00152 tRNA synthetases class II (D, K and N) JI729_00430 PF01336 OB-fold nucleic acid binding domain JI729_00460 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE JI729_00465 PF00814 Glycoprotease family JI729_00470 PF00583 Acetyltransferase (GNAT) family JI729_00475 PF00814 Glycoprotease family JI729_00480 PF12848 ABC transporter JI729_00480 PF16326 ABC transporter C-terminal domain JI729_00480 PF00005 ABC transporter JI729_00485 PF02629 CoA binding domain JI729_00485 PF06971 Putative DNA-binding protein N-terminus JI729_00495 PF02517 CPBP intramembrane metalloprotease JI729_00500 PF00166 Chaperonin 10 Kd subunit JI729_00505 PF00118 TCP-1/cpn60 chaperonin family JI729_00510 PF00958 GMP synthase C terminal domain JI729_00510 PF00117 Glutamine amidotransferase class-I JI729_00510 PF02540 NAD synthase JI729_00515 PF00860 Permease family JI729_00520 PF00486 Transcriptional regulatory protein, C terminal JI729_00520 PF00072 Response regulator receiver domain JI729_00525 PF16736 Single Cache-like JI729_00525 PF00512 His Kinase A (phospho-acceptor) domain JI729_00525 PF00989 PAS fold JI729_00525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_00550 PF01323 DSBA-like thioredoxin domain JI729_00575 PF02673 Bacitracin resistance protein BacA JI729_00585 PF00005 ABC transporter JI729_00590 PF00512 His Kinase A (phospho-acceptor) domain JI729_00590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_00595 PF00486 Transcriptional regulatory protein, C terminal JI729_00595 PF00072 Response regulator receiver domain JI729_00615 PF05045 Rhamnan synthesis protein F JI729_00615 PF14307 Glycosyltransferase WbsX JI729_00630 PF16363 GDP-mannose 4,6 dehydratase JI729_00640 PF00535 Glycosyl transferase family 2 JI729_00660 PF00892 EamA-like transporter family JI729_00685 PF00731 AIR carboxylase JI729_00690 PF02222 ATP-grasp domain JI729_00690 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain JI729_00695 PF00206 Lyase JI729_00695 PF10397 Adenylosuccinate lyase C-terminus JI729_00700 PF01259 SAICAR synthetase JI729_00705 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase JI729_00715 PF00586 AIR synthase related protein, N-terminal domain JI729_00715 PF02769 AIR synthase related protein, C-terminal domain JI729_00715 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain JI729_00720 PF00156 Phosphoribosyl transferase domain JI729_00725 PF00586 AIR synthase related protein, N-terminal domain JI729_00725 PF02769 AIR synthase related protein, C-terminal domain JI729_00730 PF00551 Formyl transferase JI729_00735 PF02142 MGS-like domain JI729_00735 PF01808 AICARFT/IMPCHase bienzyme JI729_00740 PF02843 Phosphoribosylglycinamide synthetase, C domain JI729_00740 PF02844 Phosphoribosylglycinamide synthetase, N domain JI729_00740 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain JI729_00760 PF01884 PcrB family JI729_00765 PF13361 UvrD-like helicase C-terminal domain JI729_00765 PF00580 UvrD/REP helicase N-terminal domain JI729_00770 PF00533 BRCA1 C Terminus (BRCT) domain JI729_00770 PF12826 Helix-hairpin-helix motif JI729_00770 PF03119 NAD-dependent DNA ligase C4 zinc finger domain JI729_00770 PF03120 NAD-dependent DNA ligase OB-fold domain JI729_00770 PF01653 NAD-dependent DNA ligase adenylation domain JI729_00775 PF07537 CamS sex pheromone cAM373 precursor JI729_00780 PF01925 Sulfite exporter TauE/SafE JI729_00785 PF00171 Aldehyde dehydrogenase family JI729_00790 PF00857 Isochorismatase family JI729_00795 PF00005 ABC transporter JI729_00795 PF09383 NIL domain JI729_00800 PF00528 Binding-protein-dependent transport system inner membrane component JI729_00805 PF03180 NLPA lipoprotein JI729_00820 PF02374 Anion-transporting ATPase JI729_00820 PF17886 HSP20-like domain found in ArsA JI729_00825 PF01047 MarR family JI729_00830 PF05360 yiaA/B two helix domain JI729_00835 PF02686 Glu-tRNAGln amidotransferase C subunit JI729_00840 PF01425 Amidase JI729_00845 PF02934 GatB/GatE catalytic domain JI729_00845 PF02637 GatB domain JI729_00850 PF00781 Diacylglycerol kinase catalytic domain JI729_00855 PF13419 Haloacid dehalogenase-like hydrolase JI729_00860 PF00202 Aminotransferase class-III JI729_00865 PF00158 Sigma-54 interaction domain JI729_00870 PF00171 Aldehyde dehydrogenase family JI729_00875 PF00893 Small Multidrug Resistance protein JI729_00885 PF02073 Thermophilic metalloprotease (M29) JI729_00900 PF07670 Nucleoside recognition JI729_00900 PF07662 Na+ dependent nucleoside transporter C-terminus JI729_00900 PF01773 Na+ dependent nucleoside transporter N-terminus JI729_00905 PF05958 tRNA (Uracil-5-)-methyltransferase JI729_00905 PF13847 Methyltransferase domain JI729_00905 PF01938 TRAM domain JI729_00910 PF01207 Dihydrouridine synthase (Dus) JI729_00915 PF07308 Protein of unknown function (DUF1456) JI729_00930 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JI729_00930 PF13378 Enolase C-terminal domain-like JI729_00940 PF03553 Na+/H+ antiporter family JI729_00945 PF01546 Peptidase family M20/M25/M40 JI729_00945 PF07687 Peptidase dimerisation domain JI729_00955 PF13192 Thioredoxin domain JI729_00955 PF07992 Pyridine nucleotide-disulphide oxidoreductase JI729_00960 PF00578 AhpC/TSA family JI729_00965 PF01636 Phosphotransferase enzyme family JI729_00970 PF01008 Initiation factor 2 subunit family JI729_00975 PF00596 Class II Aldolase and Adducin N-terminal domain JI729_00980 PF01032 FecCD transport family JI729_00985 PF01032 FecCD transport family JI729_00990 PF01497 Periplasmic binding protein JI729_00995 PF07992 Pyridine nucleotide-disulphide oxidoreductase JI729_01005 PF12728 Helix-turn-helix domain JI729_01030 PF13426 PAS domain JI729_01030 PF13188 PAS domain JI729_01030 PF00512 His Kinase A (phospho-acceptor) domain JI729_01030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_01030 PF00989 PAS fold JI729_01050 PF10127 RNA repair pathway DNA polymerase beta family JI729_01055 PF07690 Major Facilitator Superfamily JI729_01060 PF00355 Rieske [2Fe-2S] domain JI729_01060 PF01266 FAD dependent oxidoreductase JI729_01070 PF00528 Binding-protein-dependent transport system inner membrane component JI729_01075 PF00497 Bacterial extracellular solute-binding proteins, family 3 JI729_01080 PF00005 ABC transporter JI729_01085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JI729_01085 PF12729 Four helix bundle sensory module for signal transduction JI729_01085 PF00672 HAMP domain JI729_01090 PF02863 Arginine repressor, C-terminal domain JI729_01090 PF01316 Arginine repressor, DNA binding domain JI729_01100 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JI729_01100 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JI729_01105 PF13520 Amino acid permease JI729_01110 PF00696 Amino acid kinase family JI729_01115 PF00027 Cyclic nucleotide-binding domain JI729_01115 PF13545 Crp-like helix-turn-helix domain JI729_01130 PF16657 Maltogenic Amylase, C-terminal domain JI729_01130 PF00128 Alpha amylase, catalytic domain JI729_01135 PF02378 Phosphotransferase system, EIIC JI729_01135 PF00367 phosphotransferase system, EIIB JI729_01135 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JI729_01140 PF03372 Endonuclease/Exonuclease/phosphatase family JI729_01145 PF01061 ABC-2 type transporter JI729_01150 PF01131 DNA topoisomerase JI729_01150 PF01751 Toprim domain JI729_01155 PF02110 Hydroxyethylthiazole kinase family JI729_01160 PF02581 Thiamine monophosphate synthase JI729_01165 PF03605 Anaerobic c4-dicarboxylate membrane transporter JI729_01170 PF00672 HAMP domain JI729_01170 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JI729_01175 PF07993 Male sterility protein JI729_01175 PF13193 AMP-binding enzyme C-terminal domain JI729_01175 PF00668 Condensation domain JI729_01175 PF00550 Phosphopantetheine attachment site JI729_01175 PF00501 AMP-binding enzyme JI729_01180 PF01910 Thiamine-binding protein JI729_01185 PF00528 Binding-protein-dependent transport system inner membrane component JI729_01195 PF00005 ABC transporter JI729_01205 PF00704 Glycosyl hydrolases family 18 JI729_01205 PF00041 Fibronectin type III domain JI729_01230 PF00440 Bacterial regulatory proteins, tetR family JI729_01230 PF08360 QacR-like protein, C-terminal region JI729_01245 PF11700 Vacuole effluxer Atg22 like JI729_01260 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JI729_01260 PF03129 Anticodon binding domain JI729_01260 PF09180 Prolyl-tRNA synthetase, C-terminal JI729_01270 PF00480 ROK family JI729_01275 PF02342 TerD domain JI729_01280 PF02342 TerD domain JI729_01285 PF02342 TerD domain JI729_01290 PF03741 Integral membrane protein TerC family JI729_01295 PF14266 Putative component of 'biosynthetic module' JI729_01300 PF05816 Toxic anion resistance protein (TelA) JI729_01305 PF00689 Cation transporting ATPase, C-terminus JI729_01305 PF00690 Cation transporter/ATPase, N-terminus JI729_01310 PF06569 Protein of unknown function (DUF1128) JI729_01315 PF01451 Low molecular weight phosphotyrosine protein phosphatase JI729_01325 PF03631 Virulence factor BrkB JI729_01335 PF00892 EamA-like transporter family JI729_01345 PF10502 Signal peptidase, peptidase S26 JI729_01355 PF09335 SNARE associated Golgi protein JI729_01370 PF16242 Pyridoxamine 5'-phosphate oxidase like JI729_01375 PF01699 Sodium/calcium exchanger protein JI729_01380 PF14167 YfkD-like protein JI729_01385 PF08756 YfkB-like domain JI729_01385 PF04055 Radical SAM superfamily JI729_01395 PF05683 Fumarase C-terminus JI729_01395 PF05681 Fumarate hydratase (Fumerase) JI729_01400 PF01522 Polysaccharide deacetylase JI729_01405 PF00730 HhH-GPD superfamily base excision DNA repair protein JI729_01410 PF05958 tRNA (Uracil-5-)-methyltransferase JI729_01410 PF01938 TRAM domain JI729_01415 PF01416 tRNA pseudouridine synthase JI729_01425 PF00158 Sigma-54 interaction domain JI729_01425 PF13426 PAS domain JI729_01425 PF02954 Bacterial regulatory protein, Fis family JI729_01435 PF00324 Amino acid permease JI729_01440 PF01546 Peptidase family M20/M25/M40 JI729_01440 PF07687 Peptidase dimerisation domain JI729_01465 PF04960 Glutaminase JI729_01470 PF00367 phosphotransferase system, EIIB JI729_01470 PF02378 Phosphotransferase system, EIIC JI729_01475 PF00144 Beta-lactamase JI729_01490 PF00535 Glycosyl transferase family 2 JI729_01495 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JI729_01495 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JI729_01495 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JI729_01500 PF00551 Formyl transferase JI729_01500 PF02911 Formyl transferase, C-terminal domain JI729_01500 PF01370 NAD dependent epimerase/dehydratase family JI729_01505 PF00535 Glycosyl transferase family 2 JI729_01515 PF01228 Glycine radical JI729_01515 PF02901 Pyruvate formate lyase-like JI729_01520 PF04055 Radical SAM superfamily JI729_01525 PF04101 Glycosyltransferase family 28 C-terminal domain JI729_01525 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase JI729_01540 PF01979 Amidohydrolase family JI729_01545 PF01370 NAD dependent epimerase/dehydratase family JI729_01545 PF08338 Domain of unknown function (DUF1731) JI729_01550 PF02631 RecX family JI729_01565 PF08176 Small acid-soluble spore protein K family JI729_01570 PF14043 WVELL protein JI729_01575 PF04307 LexA-binding, inner membrane-associated putative hydrolase JI729_01580 PF14815 NUDIX domain JI729_01580 PF00730 HhH-GPD superfamily base excision DNA repair protein JI729_01590 PF04259 Small, acid-soluble spore protein, gamma-type JI729_01595 PF14182 YgaB-like protein JI729_01600 PF04167 Protein of unknown function (DUF402) JI729_01605 PF00664 ABC transporter transmembrane region JI729_01605 PF00005 ABC transporter JI729_01610 PF06081 Aromatic acid exporter family member 1 JI729_01615 PF00310 Glutamine amidotransferases class-II JI729_01615 PF04898 Glutamate synthase central domain JI729_01615 PF01645 Conserved region in glutamate synthase JI729_01615 PF01493 GXGXG motif JI729_01620 PF00202 Aminotransferase class-III JI729_01625 PF00005 ABC transporter JI729_01640 PF07885 Ion channel JI729_01645 PF00578 AhpC/TSA family JI729_01650 PF01475 Ferric uptake regulator family JI729_01660 PF11023 Zinc-ribbon containing domain JI729_01760 PF01709 Transcriptional regulator JI729_01765 PF13344 Haloacid dehalogenase-like hydrolase JI729_01765 PF00293 NUDIX domain JI729_01770 PF00912 Transglycosylase JI729_01770 PF00905 Penicillin binding protein transpeptidase domain JI729_01775 PF13462 Thioredoxin JI729_01785 PF08331 Domain of unknown function (DUF1730) JI729_01790 PF12671 Putative amidase domain JI729_01795 PF00588 SpoU rRNA Methylase family JI729_01800 PF00563 EAL domain JI729_01800 PF00990 Diguanylate cyclase, GGDEF domain JI729_01800 PF03707 Bacterial signalling protein N terminal repeat JI729_01805 PF08298 PrkA AAA domain JI729_01805 PF06798 PrkA serine protein kinase C-terminal domain JI729_01810 PF04285 Protein of unknown function (DUF444) JI729_01825 PF02028 BCCT, betaine/carnitine/choline family transporter JI729_01830 PF18496 Collagenase G catalytic helper subdomain JI729_01830 PF01752 Collagenase JI729_01830 PF08453 Peptidase family M9 N-terminal JI729_01840 PF01145 SPFH domain / Band 7 family JI729_01840 PF15975 Flotillin JI729_01845 PF00672 HAMP domain JI729_01845 PF02743 Cache domain JI729_01845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JI729_01850 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JI729_01850 PF00989 PAS fold JI729_01850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_01850 PF17203 Single cache domain 3 JI729_01855 PF12431 Transcriptional regulator JI729_01855 PF00072 Response regulator receiver domain JI729_01860 PF03600 Citrate transporter JI729_01885 PF04309 Glycerol-3-phosphate responsive antiterminator JI729_01890 PF00005 ABC transporter JI729_01890 PF17912 MalK OB fold domain JI729_01895 PF00528 Binding-protein-dependent transport system inner membrane component JI729_01900 PF00528 Binding-protein-dependent transport system inner membrane component JI729_01905 PF13416 Bacterial extracellular solute-binding protein JI729_01910 PF00149 Calcineurin-like phosphoesterase JI729_01915 PF00486 Transcriptional regulatory protein, C terminal JI729_01915 PF00072 Response regulator receiver domain JI729_01920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_01920 PF00512 His Kinase A (phospho-acceptor) domain JI729_01930 PF13529 Peptidase_C39 like family JI729_01935 PF02743 Cache domain JI729_01935 PF00672 HAMP domain JI729_01935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JI729_01940 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JI729_01940 PF00989 PAS fold JI729_01940 PF17203 Single cache domain 3 JI729_01940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_01945 PF00072 Response regulator receiver domain JI729_01950 PF03390 2-hydroxycarboxylate transporter family JI729_01955 PF03949 Malic enzyme, NAD binding domain JI729_01955 PF00390 Malic enzyme, N-terminal domain JI729_01965 PF00892 EamA-like transporter family JI729_01970 PF00392 Bacterial regulatory proteins, gntR family JI729_01970 PF00155 Aminotransferase class I and II JI729_01980 PF00672 HAMP domain JI729_01980 PF00989 PAS fold JI729_01980 PF00512 His Kinase A (phospho-acceptor) domain JI729_01980 PF18698 Histidine kinase sensor domain JI729_01980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_01985 PF00486 Transcriptional regulatory protein, C terminal JI729_01985 PF00072 Response regulator receiver domain JI729_01995 PF02634 FdhD/NarQ family JI729_02000 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JI729_02000 PF01568 Molydopterin dinucleotide binding domain JI729_02000 PF00384 Molybdopterin oxidoreductase JI729_02000 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JI729_02000 PF00037 4Fe-4S binding domain JI729_02005 PF07849 Protein of unknown function (DUF1641) JI729_02015 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JI729_02015 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JI729_02020 PF13520 Amino acid permease JI729_02030 PF01022 Bacterial regulatory protein, arsR family JI729_02035 PF00403 Heavy-metal-associated domain JI729_02040 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain JI729_02040 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain JI729_02040 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family JI729_02055 PF02868 Thermolysin metallopeptidase, alpha-helical domain JI729_02055 PF07504 Fungalysin/Thermolysin Propeptide Motif JI729_02055 PF03413 Peptidase propeptide and YPEB domain JI729_02055 PF01447 Thermolysin metallopeptidase, catalytic domain JI729_02075 PF04294 VanW like protein JI729_02080 PF03816 Cell envelope-related transcriptional attenuator domain JI729_02085 PF07662 Na+ dependent nucleoside transporter C-terminus JI729_02085 PF01773 Na+ dependent nucleoside transporter N-terminus JI729_02090 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JI729_02095 PF00571 CBS domain JI729_02095 PF03471 Transporter associated domain JI729_02095 PF01595 Cyclin M transmembrane N-terminal domain JI729_02100 PF10415 Fumarase C C-terminus JI729_02100 PF00206 Lyase JI729_02105 PF02652 L-lactate permease JI729_02110 PF01022 Bacterial regulatory protein, arsR family JI729_02115 PF08141 Small acid-soluble spore protein H family JI729_02120 PF00854 POT family JI729_02125 PF01497 Periplasmic binding protein JI729_02130 PF01032 FecCD transport family JI729_02135 PF01032 FecCD transport family JI729_02140 PF00005 ABC transporter JI729_02145 PF08241 Methyltransferase domain JI729_02150 PF00155 Aminotransferase class I and II JI729_02155 PF01370 NAD dependent epimerase/dehydratase family JI729_02160 PF13344 Haloacid dehalogenase-like hydrolase JI729_02160 PF00293 NUDIX domain JI729_02165 PF00092 von Willebrand factor type A domain JI729_02170 PF07728 AAA domain (dynein-related subfamily) JI729_02175 PF13091 PLD-like domain JI729_02175 PF13396 Phospholipase_D-nuclease N-terminal JI729_02185 PF03707 Bacterial signalling protein N terminal repeat JI729_02185 PF00563 EAL domain JI729_02185 PF00990 Diguanylate cyclase, GGDEF domain JI729_02190 PF13520 Amino acid permease JI729_02195 PF00392 Bacterial regulatory proteins, gntR family JI729_02195 PF07702 UTRA domain JI729_02200 PF02378 Phosphotransferase system, EIIC JI729_02200 PF00367 phosphotransferase system, EIIB JI729_02205 PF00128 Alpha amylase, catalytic domain JI729_02205 PF16657 Maltogenic Amylase, C-terminal domain JI729_02220 PF03323 Bacillus/Clostridium GerA spore germination protein JI729_02225 PF01636 Phosphotransferase enzyme family JI729_02230 PF01235 Sodium:alanine symporter family JI729_02235 PF00005 ABC transporter JI729_02240 PF00497 Bacterial extracellular solute-binding proteins, family 3 JI729_02245 PF00528 Binding-protein-dependent transport system inner membrane component JI729_02250 PF00528 Binding-protein-dependent transport system inner membrane component JI729_02255 PF00324 Amino acid permease JI729_02270 PF08281 Sigma-70, region 4 JI729_02270 PF04542 Sigma-70 region 2 JI729_02280 PF08279 HTH domain JI729_02280 PF13280 WYL domain JI729_02285 PF01872 RibD C-terminal domain JI729_02290 PF00672 HAMP domain JI729_02290 PF18698 Histidine kinase sensor domain JI729_02290 PF00989 PAS fold JI729_02290 PF00512 His Kinase A (phospho-acceptor) domain JI729_02290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_02295 PF00072 Response regulator receiver domain JI729_02295 PF00486 Transcriptional regulatory protein, C terminal JI729_02305 PF00916 Sulfate permease family JI729_02305 PF01740 STAS domain JI729_02310 PF00582 Universal stress protein family JI729_02320 PF07690 Major Facilitator Superfamily JI729_02325 PF01047 MarR family JI729_02330 PF07690 Major Facilitator Superfamily JI729_02335 PF00356 Bacterial regulatory proteins, lacI family JI729_02340 PF00294 pfkB family carbohydrate kinase JI729_02345 PF05025 RbsD / FucU transport protein family JI729_02350 PF00005 ABC transporter JI729_02355 PF02653 Branched-chain amino acid transport system / permease component JI729_02360 PF13407 Periplasmic binding protein domain JI729_02365 PF00923 Transaldolase/Fructose-6-phosphate aldolase JI729_02370 PF05547 Immune inhibitor A peptidase M6 JI729_02390 PF00107 Zinc-binding dehydrogenase JI729_02390 PF08240 Alcohol dehydrogenase GroES-like domain JI729_02400 PF00882 Zinc dependent phospholipase C JI729_02405 PF03372 Endonuclease/Exonuclease/phosphatase family JI729_02435 PF02673 Bacitracin resistance protein BacA JI729_02440 PF00672 HAMP domain JI729_02440 PF02743 Cache domain JI729_02440 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JI729_02445 PF01476 LysM domain JI729_02445 PF06725 3D domain JI729_02450 PF01381 Helix-turn-helix JI729_02460 PF04203 Sortase domain JI729_02470 PF00854 POT family JI729_02475 PF05525 Branched-chain amino acid transport protein JI729_02490 PF00324 Amino acid permease JI729_02495 PF00860 Permease family JI729_02510 PF13673 Acetyltransferase (GNAT) domain JI729_02520 PF00999 Sodium/hydrogen exchanger family JI729_02520 PF02080 TrkA-C domain JI729_02520 PF02254 TrkA-N domain JI729_02530 PF00510 Cytochrome c oxidase subunit III JI729_02535 PF00115 Cytochrome C and Quinol oxidase polypeptide I JI729_02540 PF02790 Cytochrome C oxidase subunit II, transmembrane domain JI729_02545 PF00324 Amino acid permease JI729_02550 PF13529 Peptidase_C39 like family JI729_02555 PF07687 Peptidase dimerisation domain JI729_02555 PF01546 Peptidase family M20/M25/M40 JI729_02560 PF11755 Protein of unknown function (DUF3311) JI729_02565 PF00474 Sodium:solute symporter family JI729_02570 PF03323 Bacillus/Clostridium GerA spore germination protein JI729_02575 PF03845 Spore germination protein JI729_02580 PF05504 Spore germination B3/ GerAC like, C-terminal JI729_02590 PF02421 Ferrous iron transport protein B JI729_02590 PF07670 Nucleoside recognition JI729_02590 PF07664 Ferrous iron transport protein B C terminus JI729_02590 PF17910 FeoB cytosolic helical domain JI729_02595 PF02421 Ferrous iron transport protein B JI729_02595 PF07670 Nucleoside recognition JI729_02595 PF07664 Ferrous iron transport protein B C terminus JI729_02595 PF17910 FeoB cytosolic helical domain JI729_02600 PF02421 Ferrous iron transport protein B JI729_02600 PF07670 Nucleoside recognition JI729_02600 PF04023 FeoA domain JI729_02600 PF07664 Ferrous iron transport protein B C terminus JI729_02600 PF17910 FeoB cytosolic helical domain JI729_02605 PF12849 PBP superfamily domain JI729_02610 PF00528 Binding-protein-dependent transport system inner membrane component JI729_02615 PF00528 Binding-protein-dependent transport system inner membrane component JI729_02620 PF00873 AcrB/AcrD/AcrF family JI729_02740 PF00571 CBS domain JI729_02755 PF00246 Zinc carboxypeptidase JI729_02755 PF08239 Bacterial SH3 domain JI729_02760 PF03070 TENA/THI-4/PQQC family JI729_02765 PF00005 ABC transporter JI729_02770 PF00528 Binding-protein-dependent transport system inner membrane component JI729_02775 PF09084 NMT1/THI5 like JI729_02780 PF02581 Thiamine monophosphate synthase JI729_02785 PF01266 FAD dependent oxidoreductase JI729_02790 PF02597 ThiS family JI729_02795 PF05690 Thiazole biosynthesis protein ThiG JI729_02800 PF00899 ThiF family JI729_02805 PF08543 Phosphomethylpyrimidine kinase JI729_02830 PF03814 Potassium-transporting ATPase A subunit JI729_02840 PF02669 K+-transporting ATPase, c chain JI729_02845 PF02702 Osmosensitive K+ channel His kinase sensor domain JI729_02850 PF07690 Major Facilitator Superfamily JI729_02855 PF01047 MarR family JI729_02880 PF00005 ABC transporter JI729_02890 PF00860 Permease family JI729_02900 PF03734 L,D-transpeptidase catalytic domain JI729_02900 PF17969 L,D-transpeptidase C-terminal domain JI729_02910 PF00294 pfkB family carbohydrate kinase JI729_02915 PF08244 Glycosyl hydrolases family 32 C terminal JI729_02915 PF00251 Glycosyl hydrolases family 32 N-terminal domain JI729_02920 PF00367 phosphotransferase system, EIIB JI729_02920 PF02378 Phosphotransferase system, EIIC JI729_02925 PF00356 Bacterial regulatory proteins, lacI family JI729_02925 PF13407 Periplasmic binding protein domain JI729_02935 PF00085 Thioredoxin JI729_02940 PF02600 Disulfide bond formation protein DsbB JI729_02945 PF14148 YhdB-like protein JI729_02955 PF03845 Spore germination protein JI729_02965 PF03323 Bacillus/Clostridium GerA spore germination protein JI729_02975 PF00881 Nitroreductase family JI729_02980 PF04293 SpoVR like protein JI729_02990 PF00089 Trypsin JI729_03000 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JI729_03000 PF07992 Pyridine nucleotide-disulphide oxidoreductase JI729_03005 PF02583 Metal-sensitive transcriptional repressor JI729_03010 PF01206 Sulfurtransferase TusA JI729_03010 PF00581 Rhodanese-like domain JI729_03015 PF00753 Metallo-beta-lactamase superfamily JI729_03015 PF00581 Rhodanese-like domain JI729_03020 PF01206 Sulfurtransferase TusA JI729_03025 PF01206 Sulfurtransferase TusA JI729_03035 PF00581 Rhodanese-like domain JI729_03035 PF01206 Sulfurtransferase TusA JI729_03045 PF13686 DsrE/DsrF/DrsH-like family JI729_03050 PF01925 Sulfite exporter TauE/SafE JI729_03060 PF03816 Cell envelope-related transcriptional attenuator domain JI729_03065 PF08240 Alcohol dehydrogenase GroES-like domain JI729_03065 PF00107 Zinc-binding dehydrogenase JI729_03070 PF02690 Na+/Pi-cotransporter JI729_03075 PF07690 Major Facilitator Superfamily JI729_03085 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JI729_03085 PF08279 HTH domain JI729_03085 PF05043 Mga helix-turn-helix domain JI729_03085 PF00874 PRD domain JI729_03090 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit JI729_03095 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JI729_03100 PF02378 Phosphotransferase system, EIIC JI729_03120 PF01476 LysM domain JI729_03120 PF06725 3D domain JI729_03125 PF02687 FtsX-like permease family JI729_03125 PF12704 MacB-like periplasmic core domain JI729_03130 PF00005 ABC transporter JI729_03140 PF09529 Integral membrane protein (intg_mem_TP0381) JI729_03155 PF05525 Branched-chain amino acid transport protein JI729_03160 PF05067 Manganese containing catalase JI729_03165 PF12652 CotJB protein JI729_03170 PF11007 Spore coat associated protein JA (CotJA) JI729_03185 PF02735 Ku70/Ku80 beta-barrel domain JI729_03195 PF09335 SNARE associated Golgi protein JI729_03230 PF13520 Amino acid permease JI729_03235 PF00999 Sodium/hydrogen exchanger family JI729_03245 PF01380 SIS domain JI729_03245 PF01418 Helix-turn-helix domain, rpiR family JI729_03250 PF13580 SIS domain JI729_03255 PF02378 Phosphotransferase system, EIIC JI729_03255 PF00367 phosphotransferase system, EIIB JI729_03265 PF07681 DoxX JI729_03280 PF00892 EamA-like transporter family JI729_03285 PF01037 Lrp/AsnC ligand binding domain JI729_03290 PF00206 Lyase JI729_03290 PF14698 Argininosuccinate lyase C-terminal JI729_03290 PF00583 Acetyltransferase (GNAT) family JI729_03295 PF00106 short chain dehydrogenase JI729_03300 PF13411 MerR HTH family regulatory protein JI729_03305 PF00893 Small Multidrug Resistance protein JI729_03315 PF17934 Tetracyclin repressor-like, C-terminal domain JI729_03315 PF00440 Bacterial regulatory proteins, tetR family JI729_03320 PF07690 Major Facilitator Superfamily JI729_03325 PF01638 HxlR-like helix-turn-helix JI729_03335 PF02525 Flavodoxin-like fold JI729_03350 PF01965 DJ-1/PfpI family JI729_03355 PF00199 Catalase JI729_03355 PF06628 Catalase-related immune-responsive JI729_03355 PF18011 C-terminal domain found in long catalases JI729_03365 PF13520 Amino acid permease JI729_03370 PF01177 Asp/Glu/Hydantoin racemase JI729_03380 PF00171 Aldehyde dehydrogenase family JI729_03385 PF00005 ABC transporter JI729_03385 PF00664 ABC transporter transmembrane region JI729_03390 PF00005 ABC transporter JI729_03390 PF00664 ABC transporter transmembrane region JI729_03395 PF00497 Bacterial extracellular solute-binding proteins, family 3 JI729_03400 PF00528 Binding-protein-dependent transport system inner membrane component JI729_03405 PF00005 ABC transporter JI729_03410 PF00269 Small, acid-soluble spore proteins, alpha/beta type JI729_03420 PF14398 YheC/D like ATP-grasp JI729_03430 PF04286 Protein of unknown function (DUF445) JI729_03435 PF06133 Control of competence regulator ComK, YlbF/YmcA JI729_03445 PF07730 Histidine kinase JI729_03445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_03450 PF00196 Bacterial regulatory proteins, luxR family JI729_03450 PF00072 Response regulator receiver domain JI729_03495 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JI729_03495 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JI729_03495 PF00205 Thiamine pyrophosphate enzyme, central domain JI729_03500 PF03306 Alpha-acetolactate decarboxylase JI729_03515 PF00746 LPXTG cell wall anchor motif JI729_03515 PF10425 C-terminus of bacterial fibrinogen-binding adhesin JI729_03515 PF17961 Bacterial Ig domain JI729_03515 PF04650 YSIRK type signal peptide JI729_03515 PF17210 SdrD B-like domain JI729_03520 PF01471 Putative peptidoglycan binding domain JI729_03520 PF01510 N-acetylmuramoyl-L-alanine amidase JI729_03525 PF04055 Radical SAM superfamily JI729_03530 PF13193 AMP-binding enzyme C-terminal domain JI729_03530 PF00501 AMP-binding enzyme JI729_03545 PF00916 Sulfate permease family JI729_03545 PF01740 STAS domain JI729_03550 PF01943 Polysaccharide biosynthesis protein JI729_03550 PF14667 Polysaccharide biosynthesis C-terminal domain JI729_03570 PF00378 Enoyl-CoA hydratase/isomerase JI729_03590 PF05343 M42 glutamyl aminopeptidase JI729_03595 PF00395 S-layer homology domain JI729_03595 PF01520 N-acetylmuramoyl-L-alanine amidase JI729_03605 PF11121 Protein of unknown function (DUF2639) JI729_03610 PF05544 Proline racemase JI729_03615 PF02423 Ornithine cyclodeaminase/mu-crystallin family JI729_03625 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JI729_03630 PF00528 Binding-protein-dependent transport system inner membrane component JI729_03635 PF12911 N-terminal TM domain of oligopeptide transport permease C JI729_03635 PF00528 Binding-protein-dependent transport system inner membrane component JI729_03640 PF00005 ABC transporter JI729_03640 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JI729_03645 PF00005 ABC transporter JI729_03645 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JI729_03670 PF00753 Metallo-beta-lactamase superfamily JI729_03670 PF16123 Hydroxyacylglutathione hydrolase C-terminus JI729_03685 PF00005 ABC transporter JI729_03685 PF02687 FtsX-like permease family JI729_03685 PF12704 MacB-like periplasmic core domain JI729_03720 PF02423 Ornithine cyclodeaminase/mu-crystallin family JI729_03725 PF06013 Proteins of 100 residues with WXG JI729_03740 PF04740 LXG domain of WXG superfamily JI729_03740 PF14436 Bacterial EndoU nuclease JI729_03865 PF00083 Sugar (and other) transporter JI729_03870 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JI729_03870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_03875 PF12431 Transcriptional regulator JI729_03875 PF00072 Response regulator receiver domain JI729_03875 PF08279 HTH domain JI729_03880 PF03401 Tripartite tricarboxylate transporter family receptor JI729_03890 PF02976 DNA mismatch repair enzyme MutH JI729_03895 PF00145 C-5 cytosine-specific DNA methylase JI729_03905 PF01695 IstB-like ATP binding protein JI729_03940 PF03796 DnaB-like helicase C terminal domain JI729_03940 PF00772 DnaB-like helicase N terminal domain JI729_03955 PF01925 Sulfite exporter TauE/SafE JI729_03965 PF02954 Bacterial regulatory protein, Fis family JI729_03965 PF00158 Sigma-54 interaction domain JI729_03965 PF13426 PAS domain JI729_03970 PF07722 Peptidase C26 JI729_03975 PF03606 C4-dicarboxylate anaerobic carrier JI729_03990 PF07690 Major Facilitator Superfamily JI729_04005 PF09680 Family of unknown function JI729_04010 PF13302 Acetyltransferase (GNAT) domain JI729_04045 PF06013 Proteins of 100 residues with WXG JI729_04120 PF12146 Serine aminopeptidase, S33 JI729_04120 PF13026 Protein of unknown function (DUF3887) JI729_04140 PF02805 Metal binding domain of Ada JI729_04140 PF12833 Helix-turn-helix domain JI729_04185 PF01066 CDP-alcohol phosphatidyltransferase JI729_04205 PF02733 Dak1 domain JI729_04215 PF02733 Dak1 domain JI729_04245 PF00395 S-layer homology domain JI729_04290 PF11181 Heat induced stress protein YflT JI729_04315 PF01740 STAS domain JI729_04320 PF13581 Histidine kinase-like ATPase domain JI729_04325 PF04539 Sigma-70 region 3 JI729_04325 PF04545 Sigma-70, region 4 JI729_04325 PF04542 Sigma-70 region 2 JI729_04335 PF07228 Stage II sporulation protein E (SpoIIE) JI729_04335 PF13426 PAS domain JI729_04340 PF01739 CheR methyltransferase, SAM binding domain JI729_04340 PF03705 CheR methyltransferase, all-alpha domain JI729_04345 PF01627 Hpt domain JI729_04345 PF09984 Uncharacterised signal transduction histidine kinase domain (DUF2222) JI729_04345 PF00672 HAMP domain JI729_04345 PF00512 His Kinase A (phospho-acceptor) domain JI729_04345 PF00072 Response regulator receiver domain JI729_04345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_04370 PF01906 Putative heavy-metal-binding JI729_04385 PF07282 Putative transposase DNA-binding domain JI729_04385 PF01385 Probable transposase JI729_04385 PF12323 Helix-turn-helix domain JI729_04390 PF00107 Zinc-binding dehydrogenase JI729_04390 PF08240 Alcohol dehydrogenase GroES-like domain JI729_04395 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family JI729_04400 PF11121 Protein of unknown function (DUF2639) JI729_04415 PF00149 Calcineurin-like phosphoesterase JI729_04420 PF13514 AAA domain JI729_04425 PF01336 OB-fold nucleic acid binding domain JI729_04425 PF01966 HD domain JI729_04430 PF00144 Beta-lactamase JI729_04445 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JI729_04450 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JI729_04455 PF18801 response regulator aspartate phosphatase H, N terminal JI729_04455 PF17874 MalT-like TPR region JI729_04465 PF08386 TAP-like protein JI729_04465 PF00561 alpha/beta hydrolase fold JI729_04470 PF14147 Sporulation protein YhaL JI729_04485 PF00190 Cupin JI729_04495 PF04309 Glycerol-3-phosphate responsive antiterminator JI729_04500 PF00230 Major intrinsic protein JI729_04505 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JI729_04505 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JI729_04510 PF16901 C-terminal domain of alpha-glycerophosphate oxidase JI729_04510 PF01266 FAD dependent oxidoreductase JI729_04515 PF03551 Transcriptional regulator PadR-like family JI729_04530 PF08281 Sigma-70, region 4 JI729_04530 PF04542 Sigma-70 region 2 JI729_04540 PF01098 Cell cycle protein JI729_04555 PF13538 UvrD-like helicase C-terminal domain JI729_04575 PF01047 MarR family JI729_04580 PF12732 YtxH-like protein JI729_04585 PF01230 HIT domain JI729_04590 PF00005 ABC transporter JI729_04595 PF05975 Bacterial ABC transporter protein EcsB JI729_04600 PF12787 EcsC protein family JI729_04610 PF17934 Tetracyclin repressor-like, C-terminal domain JI729_04610 PF00440 Bacterial regulatory proteins, tetR family JI729_04620 PF03703 Bacterial PH domain JI729_04625 PF03703 Bacterial PH domain JI729_04650 PF10014 2OG-Fe dioxygenase JI729_04660 PF00892 EamA-like transporter family JI729_04665 PF03703 Bacterial PH domain JI729_04670 PF03703 Bacterial PH domain JI729_04675 PF03992 Antibiotic biosynthesis monooxygenase JI729_04680 PF00912 Transglycosylase JI729_04680 PF00905 Penicillin binding protein transpeptidase domain JI729_04685 PF01208 Uroporphyrinogen decarboxylase (URO-D) JI729_04690 PF00762 Ferrochelatase JI729_04695 PF01593 Flavin containing amine oxidoreductase JI729_04720 PF03965 Penicillinase repressor JI729_04730 PF17932 Tetracyclin repressor-like, C-terminal domain JI729_04730 PF00440 Bacterial regulatory proteins, tetR family JI729_04765 PF13302 Acetyltransferase (GNAT) domain JI729_04770 PF00356 Bacterial regulatory proteins, lacI family JI729_04775 PF14149 YhfH-like protein JI729_04780 PF12706 Beta-lactamase superfamily domain JI729_04785 PF10437 Bacterial lipoate protein ligase C-terminus JI729_04785 PF03099 Biotin/lipoate A/B protein ligase family JI729_04795 PF00501 AMP-binding enzyme JI729_04795 PF13193 AMP-binding enzyme C-terminal domain JI729_04800 PF00395 S-layer homology domain JI729_04800 PF01520 N-acetylmuramoyl-L-alanine amidase JI729_04810 PF00528 Binding-protein-dependent transport system inner membrane component JI729_04815 PF00528 Binding-protein-dependent transport system inner membrane component JI729_04820 PF00005 ABC transporter JI729_04820 PF12857 TOBE-like domain JI729_04820 PF17850 CysA C-terminal regulatory domain JI729_04890 PF07968 Leukocidin/Hemolysin toxin family JI729_04900 PF00149 Calcineurin-like phosphoesterase JI729_04905 PF01966 HD domain JI729_04910 PF13791 Sigma factor regulator C-terminal JI729_04910 PF13800 Sigma factor regulator N-terminal JI729_04915 PF04542 Sigma-70 region 2 JI729_04915 PF08281 Sigma-70, region 4 JI729_04920 PF06445 GyrI-like small molecule binding domain JI729_04920 PF12833 Helix-turn-helix domain JI729_04930 PF00512 His Kinase A (phospho-acceptor) domain JI729_04930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_04935 PF00486 Transcriptional regulatory protein, C terminal JI729_04935 PF00072 Response regulator receiver domain JI729_04960 PF01435 Peptidase family M48 JI729_04960 PF16491 CAAX prenyl protease N-terminal, five membrane helices JI729_04965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JI729_04965 PF00672 HAMP domain JI729_04965 PF02743 Cache domain JI729_04970 PF00395 S-layer homology domain JI729_04970 PF00331 Glycosyl hydrolase family 10 JI729_04970 PF06452 Carbohydrate family 9 binding domain-like JI729_04970 PF02018 Carbohydrate binding domain JI729_04980 PF01274 Malate synthase JI729_04985 PF00463 Isocitrate lyase family JI729_05000 PF00313 'Cold-shock' DNA-binding domain JI729_05020 PF09335 SNARE associated Golgi protein JI729_05025 PF10502 Signal peptidase, peptidase S26 JI729_05030 PF13361 UvrD-like helicase C-terminal domain JI729_05030 PF12705 PD-(D/E)XK nuclease superfamily JI729_05035 PF12705 PD-(D/E)XK nuclease superfamily JI729_05035 PF00580 UvrD/REP helicase N-terminal domain JI729_05035 PF13361 UvrD-like helicase C-terminal domain JI729_05045 PF10676 Spore germination protein gerPA/gerPF JI729_05050 PF10970 Spore germination protein GerPE JI729_05060 PF10737 Spore germination protein GerPC JI729_05065 PF10803 Spore germination GerPB JI729_05070 PF10676 Spore germination protein gerPA/gerPF JI729_05075 PF09388 Spo0E like sporulation regulatory protein JI729_05080 PF01557 Fumarylacetoacetate (FAA) hydrolase family JI729_05090 PF00202 Aminotransferase class-III JI729_05095 PF07457 Protein of unknown function (DUF1516) JI729_05105 PF00733 Asparagine synthase JI729_05105 PF13537 Glutamine amidotransferase domain JI729_05110 PF00762 Ferrochelatase JI729_05115 PF06628 Catalase-related immune-responsive JI729_05115 PF00199 Catalase JI729_05120 PF00909 Ammonium Transporter Family JI729_05125 PF00128 Alpha amylase, catalytic domain JI729_05135 PF04461 Protein of unknown function (DUF520) JI729_05140 PF13509 S1 domain JI729_05140 PF17783 CvfB-like winged helix domain JI729_05155 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JI729_05155 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JI729_05160 PF12758 Protein of unknown function (DUF3813) JI729_05175 PF14168 YjzC-like protein JI729_05180 PF00004 ATPase family associated with various cellular activities (AAA) JI729_05180 PF02861 Clp amino terminal domain, pathogenicity island component JI729_05180 PF07724 AAA domain (Cdc48 subfamily) JI729_05180 PF10431 C-terminal, D2-small domain, of ClpB protein JI729_05180 PF17871 AAA lid domain JI729_05200 PF10815 ComZ JI729_05205 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JI729_05205 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JI729_05210 PF00109 Beta-ketoacyl synthase, N-terminal domain JI729_05210 PF02801 Beta-ketoacyl synthase, C-terminal domain JI729_05215 PF10026 Predicted Zn-dependent protease (DUF2268) JI729_05220 PF12227 Protein of unknown function (DUF3603) JI729_05225 PF00579 tRNA synthetases class I (W and Y) JI729_05235 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JI729_05240 PF00528 Binding-protein-dependent transport system inner membrane component JI729_05245 PF00528 Binding-protein-dependent transport system inner membrane component JI729_05245 PF12911 N-terminal TM domain of oligopeptide transport permease C JI729_05250 PF00005 ABC transporter JI729_05250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JI729_05255 PF08352 Oligopeptide/dipeptide transporter, C-terminal region JI729_05255 PF00005 ABC transporter JI729_05260 PF01554 MatE JI729_05265 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JI729_05275 PF03960 ArsC family JI729_05280 PF03741 Integral membrane protein TerC family JI729_05285 PF05389 Negative regulator of genetic competence (MecA) JI729_05290 PF13396 Phospholipase_D-nuclease N-terminal JI729_05290 PF13091 PLD-like domain JI729_05300 PF01432 Peptidase family M3 JI729_05300 PF08439 Oligopeptidase F JI729_05315 PF01152 Bacterial-like globin JI729_05320 PF01928 CYTH domain JI729_05330 PF04607 Region found in RelA / SpoT proteins JI729_05335 PF01513 ATP-NAD kinase JI729_05340 PF00849 RNA pseudouridylate synthase JI729_05350 PF00149 Calcineurin-like phosphoesterase JI729_05355 PF01098 Cell cycle protein JI729_05360 PF00535 Glycosyl transferase family 2 JI729_05365 PF08241 Methyltransferase domain JI729_05370 PF05711 Macrocin-O-methyltransferase (TylF) JI729_05380 PF13181 Tetratricopeptide repeat JI729_05380 PF00535 Glycosyl transferase family 2 JI729_05400 PF00483 Nucleotidyl transferase JI729_05405 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase JI729_05410 PF16363 GDP-mannose 4,6 dehydratase JI729_05415 PF04321 RmlD substrate binding domain JI729_05435 PF07098 Protein of unknown function (DUF1360) JI729_05455 PF00580 UvrD/REP helicase N-terminal domain JI729_05455 PF13361 UvrD-like helicase C-terminal domain JI729_05460 PF13673 Acetyltransferase (GNAT) domain JI729_05470 PF00756 Putative esterase JI729_05485 PF02368 Bacterial Ig-like domain (group 2) JI729_05490 PF00474 Sodium:solute symporter family JI729_05495 PF00425 chorismate binding enzyme JI729_05495 PF04715 Anthranilate synthase component I, N terminal region JI729_05500 PF00117 Glutamine amidotransferase class-I JI729_05500 PF02885 Glycosyl transferase family, helical bundle domain JI729_05500 PF00591 Glycosyl transferase family, a/b domain JI729_05505 PF00591 Glycosyl transferase family, a/b domain JI729_05505 PF02885 Glycosyl transferase family, helical bundle domain JI729_05510 PF00218 Indole-3-glycerol phosphate synthase JI729_05515 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase JI729_05520 PF00291 Pyridoxal-phosphate dependent enzyme JI729_05525 PF00290 Tryptophan synthase alpha chain JI729_05535 PF02652 L-lactate permease JI729_05540 PF10042 Uncharacterized conserved protein (DUF2278) JI729_05565 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JI729_05565 PF07992 Pyridine nucleotide-disulphide oxidoreductase JI729_05575 PF00881 Nitroreductase family JI729_05590 PF00364 Biotin-requiring enzyme JI729_05590 PF02817 e3 binding domain JI729_05590 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JI729_05595 PF02779 Transketolase, pyrimidine binding domain JI729_05595 PF16870 2-oxoglutarate dehydrogenase C-terminal JI729_05595 PF00676 Dehydrogenase E1 component JI729_05640 PF07943 Penicillin-binding protein 5, C-terminal domain JI729_05640 PF00768 D-alanyl-D-alanine carboxypeptidase JI729_05650 PF12389 Camelysin metallo-endopeptidase JI729_05660 PF12389 Camelysin metallo-endopeptidase JI729_05665 PF01381 Helix-turn-helix JI729_05665 PF08671 Anti-repressor SinI JI729_05675 PF05547 Immune inhibitor A peptidase M6 JI729_05680 PF00171 Aldehyde dehydrogenase family JI729_05685 PF00005 ABC transporter JI729_05685 PF08402 TOBE domain JI729_05690 PF00528 Binding-protein-dependent transport system inner membrane component JI729_05695 PF00528 Binding-protein-dependent transport system inner membrane component JI729_05700 PF13416 Bacterial extracellular solute-binding protein JI729_05705 PF01569 PAP2 superfamily JI729_05710 PF03176 MMPL family JI729_05720 PF01479 S4 domain JI729_05720 PF00849 RNA pseudouridylate synthase JI729_05730 PF00188 Cysteine-rich secretory protein family JI729_05735 PF02754 Cysteine-rich domain JI729_05735 PF13183 4Fe-4S dicluster domain JI729_05740 PF02913 FAD linked oxidases, C-terminal domain JI729_05740 PF01565 FAD binding domain JI729_05745 PF05651 Putative sugar diacid recognition JI729_05745 PF13556 PucR C-terminal helix-turn-helix domain JI729_05745 PF17853 GGDEF-like domain JI729_05755 PF00072 Response regulator receiver domain JI729_05755 PF00486 Transcriptional regulatory protein, C terminal JI729_05760 PF00989 PAS fold JI729_05760 PF18698 Histidine kinase sensor domain JI729_05760 PF00512 His Kinase A (phospho-acceptor) domain JI729_05760 PF00672 HAMP domain JI729_05760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_05765 PF07729 FCD domain JI729_05765 PF00392 Bacterial regulatory proteins, gntR family JI729_05770 PF02754 Cysteine-rich domain JI729_05775 PF13183 4Fe-4S dicluster domain JI729_05775 PF02589 LUD domain JI729_05775 PF11870 Domain of unknown function (DUF3390) JI729_05780 PF02589 LUD domain JI729_05785 PF06750 Bacterial Peptidase A24 N-terminal domain JI729_05785 PF01478 Type IV leader peptidase family JI729_05795 PF01226 Formate/nitrite transporter JI729_05800 PF03741 Integral membrane protein TerC family JI729_05805 PF02386 Cation transport protein JI729_05810 PF00269 Small, acid-soluble spore proteins, alpha/beta type JI729_05815 PF01575 MaoC like domain JI729_05840 PF00561 alpha/beta hydrolase fold JI729_05850 PF02386 Cation transport protein JI729_05870 PF08402 TOBE domain JI729_05870 PF00005 ABC transporter JI729_05875 PF00528 Binding-protein-dependent transport system inner membrane component JI729_05880 PF13419 Haloacid dehalogenase-like hydrolase JI729_05885 PF00266 Aminotransferase class-V JI729_05895 PF08220 DeoR-like helix-turn-helix domain JI729_05895 PF00455 DeoR C terminal sensor domain JI729_05905 PF00596 Class II Aldolase and Adducin N-terminal domain JI729_05915 PF04748 Divergent polysaccharide deacetylase JI729_05920 PF09388 Spo0E like sporulation regulatory protein JI729_05925 PF00512 His Kinase A (phospho-acceptor) domain JI729_05925 PF02743 Cache domain JI729_05925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_05930 PF01047 MarR family JI729_05940 PF12867 DinB superfamily JI729_05945 PF13188 PAS domain JI729_05945 PF00989 PAS fold JI729_05945 PF13426 PAS domain JI729_05945 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_05945 PF00512 His Kinase A (phospho-acceptor) domain JI729_05950 PF06508 Queuosine biosynthesis protein QueC JI729_05955 PF01242 6-pyruvoyl tetrahydropterin synthase JI729_05960 PF04055 Radical SAM superfamily JI729_05965 PF14489 QueF-like protein JI729_05970 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) JI729_06000 PF07972 NrdI Flavodoxin like JI729_06005 PF00317 Ribonucleotide reductase, all-alpha domain JI729_06005 PF08343 Ribonucleotide reductase N-terminal JI729_06005 PF02867 Ribonucleotide reductase, barrel domain JI729_06015 PF13392 HNH endonuclease JI729_06020 PF00268 Ribonucleotide reductase, small chain JI729_06025 PF00392 Bacterial regulatory proteins, gntR family JI729_06030 PF00005 ABC transporter JI729_06040 PF00005 ABC transporter JI729_06060 PF01037 Lrp/AsnC ligand binding domain JI729_06070 PF00857 Isochorismatase family JI729_06080 PF02016 LD-carboxypeptidase N-terminal domain JI729_06080 PF17676 LD-carboxypeptidase C-terminal domain JI729_06085 PF03060 Nitronate monooxygenase JI729_06090 PF04914 DltD protein JI729_06095 PF00550 Phosphopantetheine attachment site JI729_06100 PF03062 MBOAT, membrane-bound O-acyltransferase family JI729_06105 PF13193 AMP-binding enzyme C-terminal domain JI729_06105 PF00501 AMP-binding enzyme JI729_06115 PF01546 Peptidase family M20/M25/M40 JI729_06115 PF07687 Peptidase dimerisation domain JI729_06125 PF00258 Flavodoxin JI729_06140 PF01636 Phosphotransferase enzyme family JI729_06160 PF01554 MatE JI729_06165 PF02673 Bacitracin resistance protein BacA JI729_06180 PF01047 MarR family JI729_06190 PF00375 Sodium:dicarboxylate symporter family JI729_06195 PF02386 Cation transport protein JI729_06205 PF09579 Sporulation protein YtfJ (Spore_YtfJ) JI729_06215 PF03698 Uncharacterised protein family (UPF0180) JI729_06225 PF01063 Amino-transferase class IV JI729_06230 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JI729_06230 PF00205 Thiamine pyrophosphate enzyme, central domain JI729_06230 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JI729_06235 PF10369 Small subunit of acetolactate synthase JI729_06235 PF01842 ACT domain JI729_06240 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain JI729_06240 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain JI729_06245 PF08502 LeuA allosteric (dimerisation) domain JI729_06245 PF00682 HMGL-like JI729_06250 PF00180 Isocitrate/isopropylmalate dehydrogenase JI729_06255 PF00330 Aconitase family (aconitate hydratase) JI729_06260 PF00694 Aconitase C-terminal domain JI729_06265 PF13393 Histidyl-tRNA synthetase JI729_06270 PF01634 ATP phosphoribosyltransferase JI729_06275 PF00815 Histidinol dehydrogenase JI729_06280 PF00475 Imidazoleglycerol-phosphate dehydratase JI729_06285 PF00117 Glutamine amidotransferase class-I JI729_06290 PF00977 Histidine biosynthesis protein JI729_06295 PF00977 Histidine biosynthesis protein JI729_06300 PF01502 Phosphoribosyl-AMP cyclohydrolase JI729_06305 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase JI729_06310 PF02811 PHP domain JI729_06320 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JI729_06320 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JI729_06325 PF01066 CDP-alcohol phosphatidyltransferase JI729_06330 PF00884 Sulfatase JI729_06340 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain JI729_06340 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain JI729_06350 PF01507 Phosphoadenosine phosphosulfate reductase family JI729_06355 PF01747 ATP-sulfurylase JI729_06355 PF14306 PUA-like domain JI729_06365 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JI729_06365 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JI729_06375 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JI729_06380 PF01903 CbiX JI729_06390 PF00209 Sodium:neurotransmitter symporter family JI729_06405 PF00375 Sodium:dicarboxylate symporter family JI729_06415 PF03553 Na+/H+ antiporter family JI729_06430 PF09922 Cell wall-active antibiotics response 4TMS YvqF JI729_06435 PF07730 Histidine kinase JI729_06435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_06435 PF00672 HAMP domain JI729_06440 PF00196 Bacterial regulatory proteins, luxR family JI729_06440 PF00072 Response regulator receiver domain JI729_06450 PF05525 Branched-chain amino acid transport protein JI729_06460 PF01209 ubiE/COQ5 methyltransferase family JI729_06485 PF00970 Oxidoreductase FAD-binding domain JI729_06485 PF00042 Globin JI729_06485 PF00175 Oxidoreductase NAD-binding domain JI729_06500 PF01925 Sulfite exporter TauE/SafE JI729_06505 PF01384 Phosphate transporter family JI729_06510 PF01865 Protein of unknown function DUF47 JI729_06515 PF00912 Transglycosylase JI729_06515 PF00905 Penicillin binding protein transpeptidase domain JI729_06530 PF00989 PAS fold JI729_06530 PF00512 His Kinase A (phospho-acceptor) domain JI729_06530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_06535 PF01904 Protein of unknown function DUF72 JI729_06545 PF00589 Phage integrase family JI729_06550 PF16736 Single Cache-like JI729_06550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_06550 PF00512 His Kinase A (phospho-acceptor) domain JI729_06550 PF00989 PAS fold JI729_06555 PF01048 Phosphorylase superfamily JI729_06565 PF03706 Lysylphosphatidylglycerol synthase TM region JI729_06565 PF09924 Uncharacterised conserved protein (DUF2156) JI729_06580 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JI729_06580 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JI729_06585 PF07943 Penicillin-binding protein 5, C-terminal domain JI729_06585 PF00768 D-alanyl-D-alanine carboxypeptidase JI729_06590 PF07670 Nucleoside recognition JI729_06595 PF07670 Nucleoside recognition JI729_06600 PF00849 RNA pseudouridylate synthase JI729_06600 PF01479 S4 domain JI729_06605 PF00578 AhpC/TSA family JI729_06610 PF05140 ResB-like family JI729_06615 PF01578 Cytochrome C assembly protein JI729_06620 PF00072 Response regulator receiver domain JI729_06620 PF00486 Transcriptional regulatory protein, C terminal JI729_06625 PF18698 Histidine kinase sensor domain JI729_06625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_06625 PF00672 HAMP domain JI729_06625 PF00512 His Kinase A (phospho-acceptor) domain JI729_06625 PF00989 PAS fold JI729_06630 PF01923 Cobalamin adenosyltransferase JI729_06645 PF12822 ECF transporter, substrate-specific component JI729_06660 PF00271 Helicase conserved C-terminal domain JI729_06660 PF00270 DEAD/DEAH box helicase JI729_06665 PF02517 CPBP intramembrane metalloprotease JI729_06675 PF00149 Calcineurin-like phosphoesterase JI729_06680 PF13411 MerR HTH family regulatory protein JI729_06685 PF05389 Negative regulator of genetic competence (MecA) JI729_06690 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JI729_06690 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JI729_06715 PF00710 Asparaginase, N-terminal JI729_06715 PF17763 Glutaminase/Asparaginase C-terminal domain JI729_06725 PF02224 Cytidylate kinase JI729_06730 PF00575 S1 RNA binding domain JI729_06735 PF01070 FMN-dependent dehydrogenase JI729_06740 PF14140 YpzI-like protein JI729_06750 PF14045 YIEGIA protein JI729_06760 PF01926 50S ribosome-binding GTPase JI729_06760 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal JI729_06765 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus JI729_06765 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus JI729_06775 PF10966 Protein of unknown function (DUF2768) JI729_06785 PF09547 Stage IV sporulation protein A (spore_IV_A) JI729_06790 PF00216 Bacterial DNA-binding protein JI729_06795 PF01227 GTP cyclohydrolase I JI729_06800 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 JI729_06805 PF01209 ubiE/COQ5 methyltransferase family JI729_06810 PF00348 Polyprenyl synthetase JI729_06815 PF00334 Nucleoside diphosphate kinase JI729_06820 PF01264 Chorismate synthase JI729_06825 PF01761 3-dehydroquinate synthase JI729_06830 PF00155 Aminotransferase class I and II JI729_06840 PF08864 UPF0302 domain JI729_06840 PF08858 IDEAL domain JI729_06845 PF10673 Protein of unknown function (DUF2487) JI729_06850 PF00355 Rieske [2Fe-2S] domain JI729_06855 PF00033 Cytochrome b/b6/petB JI729_06860 PF00032 Cytochrome b(C-terminal)/b6/petD JI729_06860 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JI729_06865 PF07187 Protein of unknown function (DUF1405) JI729_06875 PF09577 Sporulation protein YpjB (SpoYpjB) JI729_06880 PF04298 Putative neutral zinc metallopeptidase JI729_06890 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JI729_06890 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JI729_06895 PF03819 MazG nucleotide pyrophosphohydrolase domain JI729_06900 PF05173 Dihydrodipicolinate reductase, C-terminus JI729_06900 PF01113 Dihydrodipicolinate reductase, N-terminus JI729_06905 PF02142 MGS-like domain JI729_06910 PF02585 GlcNAc-PI de-N-acetylase JI729_06915 PF13439 Glycosyltransferase Family 4 JI729_06915 PF00534 Glycosyl transferases group 1 JI729_06920 PF01743 Poly A polymerase head domain JI729_06920 PF12627 Probable RNA and SrmB- binding site of polymerase A JI729_06920 PF13735 tRNA nucleotidyltransferase domain 2 putative JI729_06925 PF08279 HTH domain JI729_06925 PF03099 Biotin/lipoate A/B protein ligase family JI729_06925 PF02237 Biotin protein ligase C terminal domain JI729_06935 PF02548 Ketopantoate hydroxymethyltransferase JI729_06940 PF02569 Pantoate-beta-alanine ligase JI729_06945 PF02261 Aspartate decarboxylase JI729_06950 PF13307 Helicase C-terminal domain JI729_06950 PF00929 Exonuclease JI729_06950 PF04851 Type III restriction enzyme, res subunit JI729_06955 PF14084 Protein of unknown function (DUF4264) JI729_06965 PF00155 Aminotransferase class I and II JI729_06970 PF07261 Replication initiation and membrane attachment JI729_06975 PF00730 HhH-GPD superfamily base excision DNA repair protein JI729_06975 PF00633 Helix-hairpin-helix motif JI729_06975 PF10576 Iron-sulfur binding domain of endonuclease III JI729_06985 PF00912 Transglycosylase JI729_06985 PF00905 Penicillin binding protein transpeptidase domain JI729_06990 PF03838 Recombination protein U JI729_06995 PF10720 Protein of unknown function (DUF2515) JI729_07025 PF06908 YspA SLOG family JI729_07030 PF05103 DivIVA protein JI729_07040 PF02926 THUMP domain JI729_07040 PF01170 Putative RNA methylase family UPF0020 JI729_07050 PF13307 Helicase C-terminal domain JI729_07055 PF02074 Carboxypeptidase Taq (M32) metallopeptidase JI729_07065 PF00557 Metallopeptidase family M24 JI729_07070 PF00156 Phosphoribosyl transferase domain JI729_07075 PF00860 Permease family JI729_07080 PF04235 Protein of unknown function (DUF418) JI729_07085 PF00350 Dynamin family JI729_07095 PF00583 Acetyltransferase (GNAT) family JI729_07100 PF10752 Protein of unknown function (DUF2533) JI729_07105 PF00581 Rhodanese-like domain JI729_07140 PF00690 Cation transporter/ATPase, N-terminus JI729_07140 PF00689 Cation transporting ATPase, C-terminus JI729_07145 PF01367 5'-3' exonuclease, C-terminal SAM fold JI729_07145 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JI729_07160 PF13807 G-rich domain on putative tyrosine kinase JI729_07160 PF02706 Chain length determinant protein JI729_07170 PF02397 Bacterial sugar transferase JI729_07185 PF00535 Glycosyl transferase family 2 JI729_07190 PF13439 Glycosyltransferase Family 4 JI729_07190 PF00534 Glycosyl transferases group 1 JI729_07205 PF13673 Acetyltransferase (GNAT) domain JI729_07205 PF18014 Acetyltransferase (GNAT) domain JI729_07225 PF13456 Reverse transcriptase-like JI729_07230 PF01263 Aldose 1-epimerase JI729_07255 PF00313 'Cold-shock' DNA-binding domain JI729_07260 PF08892 YqcI/YcgG family JI729_07265 PF01810 LysE type translocator JI729_07285 PF00474 Sodium:solute symporter family JI729_07290 PF00202 Aminotransferase class-III JI729_07300 PF00999 Sodium/hydrogen exchanger family JI729_07305 PF17770 Ribonuclease J C-terminal domain JI729_07305 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JI729_07305 PF00753 Metallo-beta-lactamase superfamily JI729_07310 PF13411 MerR HTH family regulatory protein JI729_07310 PF06445 GyrI-like small molecule binding domain JI729_07320 PF04239 Protein of unknown function (DUF421) JI729_07325 PF02698 DUF218 domain JI729_07335 PF00881 Nitroreductase family JI729_07360 PF17209 Hfq protein JI729_07370 PF01618 MotA/TolQ/ExbB proton channel family JI729_07375 PF00691 OmpA family JI729_07375 PF13677 Membrane MotB of proton-channel complex MotA/MotB JI729_07380 PF00072 Response regulator receiver domain JI729_07385 PF01627 Hpt domain JI729_07385 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_07385 PF02895 Signal transducing histidine kinase, homodimeric domain JI729_07385 PF01584 CheW-like domain JI729_07385 PF07194 P2 response regulator binding domain JI729_07390 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JI729_07390 PF04509 CheC-like family JI729_07405 PF01739 CheR methyltransferase, SAM binding domain JI729_07405 PF03705 CheR methyltransferase, all-alpha domain JI729_07425 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JI729_07425 PF00460 Flagella basal body rod protein JI729_07430 PF00669 Bacterial flagellin N-terminal helical region JI729_07430 PF00700 Bacterial flagellin C-terminal helical region JI729_07435 PF07196 Flagellin hook IN motif JI729_07435 PF02465 Flagellar hook-associated protein 2 N-terminus JI729_07435 PF07195 Flagellar hook-associated protein 2 C-terminus JI729_07450 PF00460 Flagella basal body rod protein JI729_07460 PF02049 Flagellar hook-basal body complex protein FliE JI729_07465 PF01514 Secretory protein of YscJ/FliF family JI729_07465 PF08345 Flagellar M-ring protein C-terminal JI729_07470 PF01706 FliG C-terminal domain JI729_07470 PF14842 FliG N-terminal domain JI729_07470 PF14841 FliG middle domain JI729_07480 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JI729_07480 PF18269 T3SS EscN ATPase C-terminal domain JI729_07480 PF02874 ATP synthase alpha/beta family, beta-barrel domain JI729_07500 PF00460 Flagella basal body rod protein JI729_07500 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JI729_07500 PF07559 Flagellar basal body protein FlaE JI729_07515 PF01584 CheW-like domain JI729_07515 PF00072 Response regulator receiver domain JI729_07520 PF12181 DNA binding domain of the motility gene repressor (MogR) JI729_07525 PF00700 Bacterial flagellin C-terminal helical region JI729_07525 PF00669 Bacterial flagellin N-terminal helical region JI729_07530 PF00700 Bacterial flagellin C-terminal helical region JI729_07530 PF00669 Bacterial flagellin N-terminal helical region JI729_07535 PF01464 Transglycosylase SLT domain JI729_07545 PF02154 Flagellar motor switch protein FliM JI729_07545 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JI729_07550 PF04509 CheC-like family JI729_07550 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term JI729_07560 PF00813 FliP family JI729_07565 PF01313 Bacterial export proteins, family 3 JI729_07575 PF01312 FlhB HrpN YscU SpaS Family JI729_07580 PF00771 FHIPEP family JI729_07585 PF00448 SRP54-type protein, GTPase domain JI729_07590 PF06429 Flagellar basal body rod FlgEFG protein C-terminal JI729_07590 PF00460 Flagella basal body rod protein JI729_07595 PF02272 DHHA1 domain JI729_07595 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JI729_07595 PF01411 tRNA synthetases class II (A) JI729_07630 PF03992 Antibiotic biosynthesis monooxygenase JI729_07635 PF08141 Small acid-soluble spore protein H family JI729_07655 PF03466 LysR substrate binding domain JI729_07655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JI729_07660 PF08402 TOBE domain JI729_07660 PF00005 ABC transporter JI729_07670 PF00528 Binding-protein-dependent transport system inner membrane component JI729_07675 PF12706 Beta-lactamase superfamily domain JI729_07675 PF00753 Metallo-beta-lactamase superfamily JI729_07685 PF10787 Uncharacterised protein from bacillus cereus group JI729_07705 PF00300 Histidine phosphatase superfamily (branch 1) JI729_07715 PF00561 alpha/beta hydrolase fold JI729_07725 PF01047 MarR family JI729_07735 PF13537 Glutamine amidotransferase domain JI729_07735 PF00733 Asparagine synthase JI729_07755 PF16916 Dimerisation domain of Zinc Transporter JI729_07755 PF01545 Cation efflux family JI729_07765 PF07729 FCD domain JI729_07765 PF00392 Bacterial regulatory proteins, gntR family JI729_07770 PF00892 EamA-like transporter family JI729_07780 PF07683 Cobalamin synthesis protein cobW C-terminal domain JI729_07780 PF02492 CobW/HypB/UreG, nucleotide-binding domain JI729_07785 PF03773 Predicted permease JI729_07800 PF03553 Na+/H+ antiporter family JI729_07805 PF13411 MerR HTH family regulatory protein JI729_07815 PF10415 Fumarase C C-terminus JI729_07815 PF00206 Lyase JI729_07835 PF01554 MatE JI729_07840 PF03575 Peptidase family S51 JI729_07860 PF02683 Cytochrome C biogenesis protein transmembrane region JI729_07865 PF00578 AhpC/TSA family JI729_07880 PF00291 Pyridoxal-phosphate dependent enzyme JI729_07885 PF04286 Protein of unknown function (DUF445) JI729_07910 PF00072 Response regulator receiver domain JI729_07910 PF00196 Bacterial regulatory proteins, luxR family JI729_07915 PF13492 GAF domain JI729_07915 PF13185 GAF domain JI729_07915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_07915 PF07730 Histidine kinase JI729_07920 PF00005 ABC transporter JI729_07940 PF13091 PLD-like domain JI729_07945 PF00696 Amino acid kinase family JI729_07950 PF00375 Sodium:dicarboxylate symporter family JI729_07955 PF00206 Lyase JI729_07955 PF10415 Fumarase C C-terminus JI729_07960 PF00390 Malic enzyme, N-terminal domain JI729_07960 PF03949 Malic enzyme, NAD binding domain JI729_07965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_07970 PF00072 Response regulator receiver domain JI729_07970 PF08664 YcbB domain JI729_07975 PF00271 Helicase conserved C-terminal domain JI729_07975 PF00176 SNF2 family N-terminal domain JI729_07975 PF04434 SWIM zinc finger JI729_07985 PF03590 Aspartate-ammonia ligase JI729_07995 PF13840 ACT domain JI729_07995 PF00696 Amino acid kinase family JI729_08005 PF13761 Domain of unknown function (DUF4166) JI729_08010 PF14158 YndJ-like protein JI729_08015 PF09297 NADH pyrophosphatase zinc ribbon domain JI729_08015 PF00293 NUDIX domain JI729_08020 PF07690 Major Facilitator Superfamily JI729_08030 PF03976 Polyphosphate kinase 2 (PPK2) JI729_08035 PF10400 Virulence activator alpha C-term JI729_08035 PF03551 Transcriptional regulator PadR-like family JI729_08040 PF07690 Major Facilitator Superfamily JI729_08050 PF07690 Major Facilitator Superfamily JI729_08055 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III JI729_08055 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal JI729_08060 PF01926 50S ribosome-binding GTPase JI729_08060 PF13167 GTP-binding GTPase N-terminal JI729_08060 PF16360 GTP-binding GTPase Middle Region JI729_08065 PF07690 Major Facilitator Superfamily JI729_08070 PF00291 Pyridoxal-phosphate dependent enzyme JI729_08090 PF00209 Sodium:neurotransmitter symporter family JI729_08095 PF01522 Polysaccharide deacetylase JI729_08095 PF00457 Glycosyl hydrolases family 11 JI729_08095 PF03422 Carbohydrate binding module (family 6) JI729_08105 PF04239 Protein of unknown function (DUF421) JI729_08125 PF01625 Peptide methionine sulfoxide reductase JI729_08135 PF01063 Amino-transferase class IV JI729_08140 PF00205 Thiamine pyrophosphate enzyme, central domain JI729_08140 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JI729_08140 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JI729_08150 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain JI729_08150 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain JI729_08155 PF00920 Dehydratase family JI729_08160 PF00585 C-terminal regulatory domain of Threonine dehydratase JI729_08160 PF00291 Pyridoxal-phosphate dependent enzyme JI729_08170 PF09587 Bacterial capsule synthesis protein PGA_cap JI729_08185 PF07690 Major Facilitator Superfamily JI729_08190 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase JI729_08200 PF00072 Response regulator receiver domain JI729_08200 PF04397 LytTr DNA-binding domain JI729_08205 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain JI729_08205 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain JI729_08210 PF13673 Acetyltransferase (GNAT) domain JI729_08220 PF01979 Amidohydrolase family JI729_08225 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JI729_08230 PF13302 Acetyltransferase (GNAT) domain JI729_08235 PF00072 Response regulator receiver domain JI729_08235 PF00486 Transcriptional regulatory protein, C terminal JI729_08240 PF00512 His Kinase A (phospho-acceptor) domain JI729_08240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_08250 PF01566 Natural resistance-associated macrophage protein JI729_08255 PF00581 Rhodanese-like domain JI729_08255 PF17773 UPF0176 acylphosphatase like domain JI729_08255 PF12368 Rhodanase C-terminal JI729_08265 PF08546 Ketopantoate reductase PanE/ApbA C terminal JI729_08265 PF02558 Ketopantoate reductase PanE/ApbA JI729_08270 PF13520 Amino acid permease JI729_08280 PF05791 Bacillus haemolytic enterotoxin (HBL) JI729_08285 PF05791 Bacillus haemolytic enterotoxin (HBL) JI729_08295 PF01906 Putative heavy-metal-binding JI729_08305 PF00440 Bacterial regulatory proteins, tetR family JI729_08310 PF04198 Putative sugar-binding domain JI729_08315 PF01791 DeoC/LacD family aldolase JI729_08320 PF07662 Na+ dependent nucleoside transporter C-terminus JI729_08320 PF01773 Na+ dependent nucleoside transporter N-terminus JI729_08325 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain JI729_08325 PF02885 Glycosyl transferase family, helical bundle domain JI729_08325 PF00591 Glycosyl transferase family, a/b domain JI729_08330 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JI729_08340 PF07301 Protein of unknown function (DUF1453) JI729_08345 PF05979 Bacterial protein of unknown function (DUF896) JI729_08350 PF00557 Metallopeptidase family M24 JI729_08350 PF05195 Aminopeptidase P, N-terminal domain JI729_08360 PF00394 Multicopper oxidase JI729_08360 PF07731 Multicopper oxidase JI729_08360 PF07732 Multicopper oxidase JI729_08370 PF01396 Topoisomerase DNA binding C4 zinc finger JI729_08370 PF13342 C-terminal repeat of topoisomerase JI729_08370 PF01751 Toprim domain JI729_08370 PF01131 DNA topoisomerase JI729_08385 PF02525 Flavodoxin-like fold JI729_08390 PF05525 Branched-chain amino acid transport protein JI729_08395 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JI729_08400 PF04234 CopC domain JI729_08400 PF05425 Copper resistance protein D JI729_08400 PF13115 YtkA-like JI729_08405 PF07987 Domain of unkown function (DUF1775) JI729_08410 PF00892 EamA-like transporter family JI729_08415 PF03466 LysR substrate binding domain JI729_08415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JI729_08420 PF02082 Transcriptional regulator JI729_08425 PF01323 DSBA-like thioredoxin domain JI729_08430 PF00881 Nitroreductase family JI729_08435 PF01425 Amidase JI729_08440 PF01594 AI-2E family transporter JI729_08445 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JI729_08445 PF00056 lactate/malate dehydrogenase, NAD binding domain JI729_08450 PF01593 Flavin containing amine oxidoreductase JI729_08455 PF07683 Cobalamin synthesis protein cobW C-terminal domain JI729_08455 PF02492 CobW/HypB/UreG, nucleotide-binding domain JI729_08465 PF00005 ABC transporter JI729_08465 PF12399 Branched-chain amino acid ATP-binding cassette transporter JI729_08470 PF00005 ABC transporter JI729_08475 PF02653 Branched-chain amino acid transport system / permease component JI729_08485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JI729_08485 PF03466 LysR substrate binding domain JI729_08495 PF14552 Tautomerase enzyme JI729_08505 PF01047 MarR family JI729_08515 PF01654 Cytochrome bd terminal oxidase subunit I JI729_08520 PF02322 Cytochrome bd terminal oxidase subunit II JI729_08525 PF00664 ABC transporter transmembrane region JI729_08525 PF00005 ABC transporter JI729_08530 PF00664 ABC transporter transmembrane region JI729_08530 PF00005 ABC transporter JI729_08540 PF00535 Glycosyl transferase family 2 JI729_08545 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family JI729_08550 PF00132 Bacterial transferase hexapeptide (six repeats) JI729_08575 PF17676 LD-carboxypeptidase C-terminal domain JI729_08575 PF02016 LD-carboxypeptidase N-terminal domain JI729_08580 PF07943 Penicillin-binding protein 5, C-terminal domain JI729_08580 PF00768 D-alanyl-D-alanine carboxypeptidase JI729_08595 PF00877 NlpC/P60 family JI729_08595 PF01476 LysM domain JI729_08605 PF00664 ABC transporter transmembrane region JI729_08605 PF00005 ABC transporter JI729_08610 PF00486 Transcriptional regulatory protein, C terminal JI729_08610 PF00072 Response regulator receiver domain JI729_08615 PF00989 PAS fold JI729_08615 PF00512 His Kinase A (phospho-acceptor) domain JI729_08615 PF16736 Single Cache-like JI729_08615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_08620 PF00106 short chain dehydrogenase JI729_08625 PF04439 Streptomycin adenylyltransferase JI729_08630 PF01522 Polysaccharide deacetylase JI729_08650 PF01842 ACT domain JI729_08650 PF00742 Homoserine dehydrogenase JI729_08650 PF03447 Homoserine dehydrogenase, NAD binding domain JI729_08655 PF00291 Pyridoxal-phosphate dependent enzyme JI729_08660 PF00288 GHMP kinases N terminal domain JI729_08660 PF08544 GHMP kinases C terminal JI729_08675 PF03816 Cell envelope-related transcriptional attenuator domain JI729_08685 PF00486 Transcriptional regulatory protein, C terminal JI729_08685 PF00072 Response regulator receiver domain JI729_08690 PF00989 PAS fold JI729_08690 PF16736 Single Cache-like JI729_08690 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_08690 PF00512 His Kinase A (phospho-acceptor) domain JI729_08695 PF01522 Polysaccharide deacetylase JI729_08705 PF02308 MgtC family JI729_08710 PF00583 Acetyltransferase (GNAT) family JI729_08715 PF04183 IucA / IucC family JI729_08715 PF06276 Ferric iron reductase FhuF-like transporter JI729_08720 PF04183 IucA / IucC family JI729_08720 PF06276 Ferric iron reductase FhuF-like transporter JI729_08725 PF00501 AMP-binding enzyme JI729_08725 PF13193 AMP-binding enzyme C-terminal domain JI729_08740 PF01261 Xylose isomerase-like TIM barrel JI729_08745 PF00269 Small, acid-soluble spore proteins, alpha/beta type JI729_08750 PF07690 Major Facilitator Superfamily JI729_08755 PF01810 LysE type translocator JI729_08760 PF00155 Aminotransferase class I and II JI729_08760 PF00392 Bacterial regulatory proteins, gntR family JI729_08770 PF01734 Patatin-like phospholipase JI729_08795 PF00293 NUDIX domain JI729_08795 PF13344 Haloacid dehalogenase-like hydrolase JI729_08800 PF02540 NAD synthase JI729_08805 PF02687 FtsX-like permease family JI729_08810 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin JI729_08810 PF18277 AbrB C-terminal domain JI729_08815 PF00082 Subtilase family JI729_08825 PF05656 Protein of unknown function (DUF805) JI729_08845 PF03193 RsgA GTPase JI729_08850 PF00672 HAMP domain JI729_08850 PF02743 Cache domain JI729_08850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JI729_08870 PF00210 Ferritin-like domain JI729_08885 PF00296 Luciferase-like monooxygenase JI729_08895 PF01593 Flavin containing amine oxidoreductase JI729_08900 PF13302 Acetyltransferase (GNAT) domain JI729_08905 PF00248 Aldo/keto reductase family JI729_08910 PF07683 Cobalamin synthesis protein cobW C-terminal domain JI729_08910 PF02492 CobW/HypB/UreG, nucleotide-binding domain JI729_08915 PF00583 Acetyltransferase (GNAT) family JI729_08920 PF01297 Zinc-uptake complex component A periplasmic JI729_08930 PF13460 NAD(P)H-binding JI729_08935 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JI729_08940 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JI729_08940 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JI729_08950 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JI729_08955 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JI729_08965 PF00300 Histidine phosphatase superfamily (branch 1) JI729_08975 PF08757 CotH kinase protein JI729_08980 PF00293 NUDIX domain JI729_08985 PF09335 SNARE associated Golgi protein JI729_08990 PF01943 Polysaccharide biosynthesis protein JI729_08990 PF14667 Polysaccharide biosynthesis C-terminal domain JI729_09000 PF03773 Predicted permease JI729_09005 PF09323 Domain of unknown function (DUF1980) JI729_09010 PF03061 Thioesterase superfamily JI729_09020 PF13396 Phospholipase_D-nuclease N-terminal JI729_09020 PF13091 PLD-like domain JI729_09035 PF13460 NAD(P)H-binding JI729_09040 PF04306 Protein of unknown function (DUF456) JI729_09045 PF00571 CBS domain JI729_09045 PF01595 Cyclin M transmembrane N-terminal domain JI729_09045 PF03471 Transporter associated domain JI729_09060 PF05525 Branched-chain amino acid transport protein JI729_09065 PF01588 Putative tRNA binding domain JI729_09085 PF07454 Stage II sporulation protein P (SpoIIP) JI729_09095 PF02557 D-alanyl-D-alanine carboxypeptidase JI729_09105 PF07690 Major Facilitator Superfamily JI729_09115 PF01145 SPFH domain / Band 7 family JI729_09120 PF07454 Stage II sporulation protein P (SpoIIP) JI729_09125 PF00300 Histidine phosphatase superfamily (branch 1) JI729_09145 PF00842 Alanine racemase, C-terminal domain JI729_09145 PF01168 Alanine racemase, N-terminal domain JI729_09160 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase JI729_09165 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JI729_09165 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JI729_09170 PF00392 Bacterial regulatory proteins, gntR family JI729_09170 PF00155 Aminotransferase class I and II JI729_09200 PF00583 Acetyltransferase (GNAT) family JI729_09215 PF06013 Proteins of 100 residues with WXG JI729_09230 PF08817 WXG100 protein secretion system (Wss), protein YukD JI729_09235 PF10140 WXG100 protein secretion system (Wss), protein YukC JI729_09240 PF12538 DNA transporter JI729_09240 PF01580 FtsK/SpoIIIE family JI729_09340 PF09579 Sporulation protein YtfJ (Spore_YtfJ) JI729_09365 PF01209 ubiE/COQ5 methyltransferase family JI729_09370 PF01268 Formate--tetrahydrofolate ligase JI729_09380 PF00271 Helicase conserved C-terminal domain JI729_09380 PF00270 DEAD/DEAH box helicase JI729_09385 PF01261 Xylose isomerase-like TIM barrel JI729_09390 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JI729_09400 PF00107 Zinc-binding dehydrogenase JI729_09400 PF08240 Alcohol dehydrogenase GroES-like domain JI729_09405 PF08281 Sigma-70, region 4 JI729_09405 PF04542 Sigma-70 region 2 JI729_09430 PF00255 Glutathione peroxidase JI729_09435 PF13559 Domain of unknown function (DUF4129) JI729_09435 PF11992 Domain of unknown function (DUF3488) JI729_09435 PF01841 Transglutaminase-like superfamily JI729_09440 PF01882 Protein of unknown function DUF58 JI729_09445 PF07726 ATPase family associated with various cellular activities (AAA) JI729_09445 PF17863 AAA lid domain JI729_09460 PF00384 Molybdopterin oxidoreductase JI729_09460 PF01568 Molydopterin dinucleotide binding domain JI729_09460 PF14710 Respiratory nitrate reductase alpha N-terminal JI729_09465 PF14711 Respiratory nitrate reductase beta C-terminal JI729_09465 PF13247 4Fe-4S dicluster domain JI729_09470 PF02613 Nitrate reductase delta subunit JI729_09475 PF02665 Nitrate reductase gamma subunit JI729_09480 PF00027 Cyclic nucleotide-binding domain JI729_09480 PF00325 Bacterial regulatory proteins, crp family JI729_09485 PF04055 Radical SAM superfamily JI729_09485 PF06463 Molybdenum Cofactor Synthesis C JI729_09490 PF00899 ThiF family JI729_09495 PF03453 MoeA N-terminal region (domain I and II) JI729_09495 PF03454 MoeA C-terminal region (domain IV) JI729_09495 PF00994 Probable molybdopterin binding domain JI729_09500 PF02391 MoaE protein JI729_09505 PF02597 ThiS family JI729_09510 PF07690 Major Facilitator Superfamily JI729_09535 PF01903 CbiX JI729_09540 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases JI729_09545 PF00355 Rieske [2Fe-2S] domain JI729_09550 PF18267 Rubredoxin NAD+ reductase C-terminal domain JI729_09550 PF07992 Pyridine nucleotide-disulphide oxidoreductase JI729_09550 PF01077 Nitrite and sulphite reductase 4Fe-4S domain JI729_09550 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain JI729_09550 PF04324 BFD-like [2Fe-2S] binding domain JI729_09555 PF04405 Domain of Unknown function (DUF542) JI729_09555 PF01814 Hemerythrin HHE cation binding domain JI729_09590 PF04232 Stage V sporulation protein S (SpoVS) JI729_09595 PF14659 Phage integrase, N-terminal SAM-like domain JI729_09595 PF00589 Phage integrase family JI729_09600 PF06114 IrrE N-terminal-like domain JI729_09605 PF01381 Helix-turn-helix JI729_09685 PF00589 Phage integrase family JI729_09690 PF03992 Antibiotic biosynthesis monooxygenase JI729_09700 PF11553 Protein of unknown function (DUF3231) JI729_09710 PF00589 Phage integrase family JI729_09720 PF10668 Phage terminase small subunit JI729_09725 PF17288 Terminase RNAseH like domain JI729_09725 PF04466 Phage terminase large subunit JI729_09745 PF14550 Putative phage serine protease XkdF JI729_09865 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase JI729_09865 PF13457 GW (Gly-Tryp) dipeptide domain JI729_09875 PF00082 Subtilase family JI729_09885 PF18801 response regulator aspartate phosphatase H, N terminal JI729_09900 PF01966 HD domain JI729_09905 PF16326 ABC transporter C-terminal domain JI729_09905 PF12848 ABC transporter JI729_09905 PF00005 ABC transporter JI729_09920 PF00436 Single-strand binding protein family JI729_09930 PF08712 Scaffold protein Nfu/NifU N terminal JI729_09930 PF13769 Virulence factor JI729_09940 PF06491 Disulphide isomerase JI729_09945 PF04445 Putative SAM-dependent methyltransferase JI729_09950 PF05746 DALR anticodon binding domain JI729_09950 PF00750 tRNA synthetases class I (R) JI729_09950 PF03485 Arginyl tRNA synthetase N terminal domain JI729_09975 PF00133 tRNA synthetases class I (I, L, M and V) JI729_09975 PF08264 Anticodon-binding domain of tRNA JI729_09990 PF01336 OB-fold nucleic acid binding domain JI729_09990 PF00152 tRNA synthetases class II (D, K and N) JI729_09995 PF00209 Sodium:neurotransmitter symporter family JI729_10010 PF10997 Alternate to MurJ JI729_10015 PF13419 Haloacid dehalogenase-like hydrolase JI729_10025 PF00465 Iron-containing alcohol dehydrogenase JI729_10030 PF01177 Asp/Glu/Hydantoin racemase JI729_10035 PF01980 tRNA-methyltransferase O JI729_10040 PF00583 Acetyltransferase (GNAT) family JI729_10045 PF11188 Protein of unknown function (DUF2975) JI729_10050 PF13443 Cro/C1-type HTH DNA-binding domain JI729_10055 PF08645 Polynucleotide kinase 3 phosphatase JI729_10065 PF00005 ABC transporter JI729_10070 PF05975 Bacterial ABC transporter protein EcsB JI729_10075 PF14005 YpjP-like protein JI729_10080 PF13419 Haloacid dehalogenase-like hydrolase JI729_10095 PF00144 Beta-lactamase JI729_10095 PF07930 D-aminopeptidase, domain B JI729_10100 PF00303 Thymidylate synthase JI729_10105 PF00186 Dihydrofolate reductase JI729_10110 PF00905 Penicillin binding protein transpeptidase domain JI729_10110 PF03717 Penicillin-binding Protein dimerisation domain JI729_10110 PF05223 NTF2-like N-terminal transpeptidase domain JI729_10115 PF02525 Flavodoxin-like fold JI729_10120 PF01553 Acyltransferase JI729_10125 PF03006 Haemolysin-III related JI729_10130 PF02416 mttA/Hcf106 family JI729_10135 PF00902 Sec-independent protein translocase protein (TatC) JI729_10145 PF02645 Uncharacterised protein, DegV family COG1307 JI729_10155 PF02630 SCO1/SenC JI729_10160 PF00011 Hsp20/alpha crystallin family JI729_10165 PF00733 Asparagine synthase JI729_10165 PF13537 Glutamine amidotransferase domain JI729_10180 PF05036 Sporulation related domain JI729_10180 PF01520 N-acetylmuramoyl-L-alanine amidase JI729_10185 PF01497 Periplasmic binding protein JI729_10190 PF01063 Amino-transferase class IV JI729_10195 PF00881 Nitroreductase family JI729_10210 PF00857 Isochorismatase family JI729_10220 PF00011 Hsp20/alpha crystallin family JI729_10225 PF00924 Mechanosensitive ion channel JI729_10230 PF07730 Histidine kinase JI729_10230 PF13185 GAF domain JI729_10235 PF00196 Bacterial regulatory proteins, luxR family JI729_10235 PF00072 Response regulator receiver domain JI729_10240 PF01380 SIS domain JI729_10240 PF01418 Helix-turn-helix domain, rpiR family JI729_10245 PF02567 Phenazine biosynthesis-like protein JI729_10250 PF00107 Zinc-binding dehydrogenase JI729_10250 PF08240 Alcohol dehydrogenase GroES-like domain JI729_10265 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JI729_10265 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JI729_10270 PF02447 GntP family permease JI729_10275 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JI729_10275 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain JI729_10295 PF03358 NADPH-dependent FMN reductase JI729_10310 PF00571 CBS domain JI729_10310 PF00005 ABC transporter JI729_10315 PF00528 Binding-protein-dependent transport system inner membrane component JI729_10320 PF13520 Amino acid permease JI729_10350 PF03471 Transporter associated domain JI729_10350 PF01595 Cyclin M transmembrane N-terminal domain JI729_10350 PF00571 CBS domain JI729_10355 PF00171 Aldehyde dehydrogenase family JI729_10360 PF07997 Protein of unknown function (DUF1694) JI729_10365 PF09385 Histidine kinase N terminal JI729_10375 PF00202 Aminotransferase class-III JI729_10380 PF01144 Coenzyme A transferase JI729_10385 PF01144 Coenzyme A transferase JI729_10390 PF01546 Peptidase family M20/M25/M40 JI729_10390 PF07687 Peptidase dimerisation domain JI729_10395 PF00583 Acetyltransferase (GNAT) family JI729_10400 PF02954 Bacterial regulatory protein, Fis family JI729_10400 PF13426 PAS domain JI729_10400 PF00158 Sigma-54 interaction domain JI729_10405 PF12544 Lysine-2,3-aminomutase JI729_10410 PF14122 YokU-like protein, putative antitoxin JI729_10415 PF06855 YozE SAM-like fold JI729_10430 PF14162 YozD-like protein JI729_10440 PF08239 Bacterial SH3 domain JI729_10440 PF00069 Protein kinase domain JI729_10445 PF07070 SpoOM protein JI729_10450 PF01569 PAP2 superfamily JI729_10455 PF01545 Cation efflux family JI729_10455 PF16916 Dimerisation domain of Zinc Transporter JI729_10460 PF00085 Thioredoxin JI729_10520 PF10676 Spore germination protein gerPA/gerPF JI729_10555 PF00905 Penicillin binding protein transpeptidase domain JI729_10555 PF00912 Transglycosylase JI729_10565 PF07690 Major Facilitator Superfamily JI729_10570 PF01521 Iron-sulphur cluster biosynthesis JI729_10575 PF00285 Citrate synthase, C-terminal domain JI729_10580 PF03972 MmgE/PrpD family JI729_10590 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JI729_10590 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JI729_10590 PF02770 Acyl-CoA dehydrogenase, middle domain JI729_10595 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JI729_10595 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JI729_10600 PF00171 Aldehyde dehydrogenase family JI729_10605 PF01810 LysE type translocator JI729_10610 PF00378 Enoyl-CoA hydratase/isomerase JI729_10625 PF12320 Type 5 capsule protein repressor C-terminal domain JI729_10625 PF00149 Calcineurin-like phosphoesterase JI729_10630 PF13476 AAA domain JI729_10635 PF00589 Phage integrase family JI729_10635 PF14659 Phage integrase, N-terminal SAM-like domain JI729_10665 PF07319 Primosomal protein DnaI N-terminus JI729_10665 PF01695 IstB-like ATP binding protein JI729_10730 PF01367 5'-3' exonuclease, C-terminal SAM fold JI729_10730 PF01612 3'-5' exonuclease JI729_10730 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JI729_10730 PF00476 DNA polymerase family A JI729_10740 PF00269 Small, acid-soluble spore proteins, alpha/beta type JI729_10750 PF02075 Crossover junction endodeoxyribonuclease RuvC JI729_10770 PF02511 Thymidylate synthase complementing protein JI729_10795 PF00145 C-5 cytosine-specific DNA methylase JI729_10800 PF00145 C-5 cytosine-specific DNA methylase JI729_10840 PF00589 Phage integrase family JI729_10935 PF01510 N-acetylmuramoyl-L-alanine amidase JI729_10935 PF13457 GW (Gly-Tryp) dipeptide domain JI729_10990 PF01022 Bacterial regulatory protein, arsR family JI729_11000 PF07690 Major Facilitator Superfamily JI729_11005 PF00106 short chain dehydrogenase JI729_11010 PF00425 chorismate binding enzyme JI729_11015 PF13193 AMP-binding enzyme C-terminal domain JI729_11015 PF00501 AMP-binding enzyme JI729_11020 PF00550 Phosphopantetheine attachment site JI729_11020 PF00857 Isochorismatase family JI729_11025 PF00501 AMP-binding enzyme JI729_11025 PF00550 Phosphopantetheine attachment site JI729_11025 PF13193 AMP-binding enzyme C-terminal domain JI729_11025 PF00975 Thioesterase domain JI729_11025 PF00668 Condensation domain JI729_11030 PF03621 MbtH-like protein JI729_11035 PF07690 Major Facilitator Superfamily JI729_11050 PF00216 Bacterial DNA-binding protein JI729_11060 PF05163 DinB family JI729_11065 PF00082 Subtilase family JI729_11070 PF01235 Sodium:alanine symporter family JI729_11090 PF00849 RNA pseudouridylate synthase JI729_11090 PF01479 S4 domain JI729_11095 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JI729_11095 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JI729_11095 PF03129 Anticodon binding domain JI729_11095 PF02824 TGS domain JI729_11100 PF00005 ABC transporter JI729_11115 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JI729_11115 PF00205 Thiamine pyrophosphate enzyme, central domain JI729_11115 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JI729_11155 PF00027 Cyclic nucleotide-binding domain JI729_11165 PF00561 alpha/beta hydrolase fold JI729_11175 PF16123 Hydroxyacylglutathione hydrolase C-terminus JI729_11175 PF00753 Metallo-beta-lactamase superfamily JI729_11185 PF03176 MMPL family JI729_11195 PF00302 Chloramphenicol acetyltransferase JI729_11210 PF00583 Acetyltransferase (GNAT) family JI729_11235 PF01593 Flavin containing amine oxidoreductase JI729_11245 PF13302 Acetyltransferase (GNAT) domain JI729_11255 PF00313 'Cold-shock' DNA-binding domain JI729_11275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JI729_11275 PF03466 LysR substrate binding domain JI729_11280 PF02774 Semialdehyde dehydrogenase, dimerisation domain JI729_11280 PF01118 Semialdehyde dehydrogenase, NAD binding domain JI729_11295 PF03466 LysR substrate binding domain JI729_11295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JI729_11300 PF03473 MOSC domain JI729_11300 PF03475 3-alpha domain JI729_11315 PF00664 ABC transporter transmembrane region JI729_11315 PF00005 ABC transporter JI729_11320 PF00005 ABC transporter JI729_11320 PF00664 ABC transporter transmembrane region JI729_11370 PF07992 Pyridine nucleotide-disulphide oxidoreductase JI729_11370 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JI729_11375 PF04542 Sigma-70 region 2 JI729_11375 PF08281 Sigma-70, region 4 JI729_11375 PF12680 SnoaL-like domain JI729_11405 PF02638 Glycosyl hydrolase-like 10 JI729_11415 PF02378 Phosphotransferase system, EIIC JI729_11425 PF03702 Anhydro-N-acetylmuramic acid kinase JI729_11430 PF01869 BadF/BadG/BcrA/BcrD ATPase family JI729_11435 PF02660 Glycerol-3-phosphate acyltransferase JI729_11440 PF00266 Aminotransferase class-V JI729_11445 PF00291 Pyridoxal-phosphate dependent enzyme JI729_11450 PF01047 MarR family JI729_11455 PF07690 Major Facilitator Superfamily JI729_11465 PF00753 Metallo-beta-lactamase superfamily JI729_11465 PF16123 Hydroxyacylglutathione hydrolase C-terminus JI729_11475 PF00270 DEAD/DEAH box helicase JI729_11475 PF00271 Helicase conserved C-terminal domain JI729_11485 PF17932 Tetracyclin repressor-like, C-terminal domain JI729_11485 PF00440 Bacterial regulatory proteins, tetR family JI729_11500 PF09313 Domain of unknown function (DUF1971) JI729_11500 PF03848 Tellurite resistance protein TehB JI729_11510 PF08241 Methyltransferase domain JI729_11515 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JI729_11515 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JI729_11515 PF00205 Thiamine pyrophosphate enzyme, central domain JI729_11520 PF01047 MarR family JI729_11525 PF00300 Histidine phosphatase superfamily (branch 1) JI729_11530 PF14171 Toxin SpoIISA, type II toxin-antitoxin system JI729_11550 PF07687 Peptidase dimerisation domain JI729_11550 PF01546 Peptidase family M20/M25/M40 JI729_11565 PF00072 Response regulator receiver domain JI729_11565 PF00196 Bacterial regulatory proteins, luxR family JI729_11575 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin JI729_11575 PF18277 AbrB C-terminal domain JI729_11585 PF01925 Sulfite exporter TauE/SafE JI729_11590 PF00132 Bacterial transferase hexapeptide (six repeats) JI729_11595 PF07943 Penicillin-binding protein 5, C-terminal domain JI729_11595 PF00768 D-alanyl-D-alanine carboxypeptidase JI729_11610 PF07690 Major Facilitator Superfamily JI729_11615 PF00501 AMP-binding enzyme JI729_11615 PF00550 Phosphopantetheine attachment site JI729_11615 PF00668 Condensation domain JI729_11615 PF13193 AMP-binding enzyme C-terminal domain JI729_11620 PF07993 Male sterility protein JI729_11620 PF13193 AMP-binding enzyme C-terminal domain JI729_11620 PF00550 Phosphopantetheine attachment site JI729_11620 PF00668 Condensation domain JI729_11620 PF00501 AMP-binding enzyme JI729_11625 PF00501 AMP-binding enzyme JI729_11625 PF00550 Phosphopantetheine attachment site JI729_11625 PF00668 Condensation domain JI729_11625 PF13193 AMP-binding enzyme C-terminal domain JI729_11630 PF01648 4'-phosphopantetheinyl transferase superfamily JI729_11635 PF00975 Thioesterase domain JI729_11660 PF13302 Acetyltransferase (GNAT) domain JI729_11670 PF01520 N-acetylmuramoyl-L-alanine amidase JI729_11670 PF00395 S-layer homology domain JI729_11690 PF00027 Cyclic nucleotide-binding domain JI729_11690 PF01734 Patatin-like phospholipase JI729_11700 PF03315 Serine dehydratase beta chain JI729_11700 PF01842 ACT domain JI729_11705 PF03313 Serine dehydratase alpha chain JI729_11740 PF00282 Pyridoxal-dependent decarboxylase conserved domain JI729_11750 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family JI729_11775 PF00905 Penicillin binding protein transpeptidase domain JI729_11775 PF05223 NTF2-like N-terminal transpeptidase domain JI729_11775 PF03717 Penicillin-binding Protein dimerisation domain JI729_11780 PF04542 Sigma-70 region 2 JI729_11780 PF08281 Sigma-70, region 4 JI729_11790 PF00905 Penicillin binding protein transpeptidase domain JI729_11790 PF03717 Penicillin-binding Protein dimerisation domain JI729_11795 PF00905 Penicillin binding protein transpeptidase domain JI729_11795 PF03717 Penicillin-binding Protein dimerisation domain JI729_11805 PF00149 Calcineurin-like phosphoesterase JI729_11815 PF00005 ABC transporter JI729_11825 PF08359 YsiA-like protein, C-terminal region JI729_11825 PF00440 Bacterial regulatory proteins, tetR family JI729_11840 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JI729_11840 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JI729_11840 PF02770 Acyl-CoA dehydrogenase, middle domain JI729_11845 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JI729_11845 PF00289 Biotin carboxylase, N-terminal domain JI729_11845 PF02785 Biotin carboxylase C-terminal domain JI729_11850 PF00364 Biotin-requiring enzyme JI729_11855 PF00682 HMGL-like JI729_11860 PF00378 Enoyl-CoA hydratase/isomerase JI729_11865 PF01039 Carboxyl transferase domain JI729_11870 PF00501 AMP-binding enzyme JI729_11870 PF16177 Acetyl-coenzyme A synthetase N-terminus JI729_11870 PF13193 AMP-binding enzyme C-terminal domain JI729_11905 PF07943 Penicillin-binding protein 5, C-terminal domain JI729_11905 PF00768 D-alanyl-D-alanine carboxypeptidase JI729_11910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_11910 PF00512 His Kinase A (phospho-acceptor) domain JI729_11915 PF00072 Response regulator receiver domain JI729_11915 PF00486 Transcriptional regulatory protein, C terminal JI729_11920 PF01966 HD domain JI729_11930 PF01048 Phosphorylase superfamily JI729_11945 PF01447 Thermolysin metallopeptidase, catalytic domain JI729_11945 PF03413 Peptidase propeptide and YPEB domain JI729_11945 PF02868 Thermolysin metallopeptidase, alpha-helical domain JI729_11945 PF07504 Fungalysin/Thermolysin Propeptide Motif JI729_11960 PF00376 MerR family regulatory protein JI729_11960 PF09278 MerR, DNA binding JI729_11965 PF07690 Major Facilitator Superfamily JI729_11975 PF01638 HxlR-like helix-turn-helix JI729_11980 PF13847 Methyltransferase domain JI729_12015 PF00155 Aminotransferase class I and II JI729_12015 PF00392 Bacterial regulatory proteins, gntR family JI729_12020 PF02796 Helix-turn-helix domain of resolvase JI729_12020 PF00239 Resolvase, N terminal domain JI729_12030 PF01965 DJ-1/PfpI family JI729_12045 PF04239 Protein of unknown function (DUF421) JI729_12060 PF08450 SMP-30/Gluconolactonase/LRE-like region JI729_12075 PF07486 Cell Wall Hydrolase JI729_12085 PF00486 Transcriptional regulatory protein, C terminal JI729_12085 PF00072 Response regulator receiver domain JI729_12090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_12095 PF12848 ABC transporter JI729_12095 PF00005 ABC transporter JI729_12105 PF00005 ABC transporter JI729_12110 PF02687 FtsX-like permease family JI729_12130 PF00742 Homoserine dehydrogenase JI729_12130 PF03447 Homoserine dehydrogenase, NAD binding domain JI729_12130 PF01842 ACT domain JI729_12135 PF00392 Bacterial regulatory proteins, gntR family JI729_12135 PF00155 Aminotransferase class I and II JI729_12140 PF01820 D-ala D-ala ligase N-terminus JI729_12140 PF07478 D-ala D-ala ligase C-terminus JI729_12145 PF03070 TENA/THI-4/PQQC family JI729_12170 PF14659 Phage integrase, N-terminal SAM-like domain JI729_12170 PF00589 Phage integrase family JI729_12190 PF01381 Helix-turn-helix JI729_12215 PF18277 AbrB C-terminal domain JI729_12215 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin JI729_12295 PF00589 Phage integrase family JI729_12345 PF00574 Clp protease JI729_12415 PF04688 SPP1 phage holin JI729_12420 PF12123 N-acetylmuramoyl-l-alanine amidase JI729_12420 PF01510 N-acetylmuramoyl-L-alanine amidase JI729_12465 PF00067 Cytochrome P450 JI729_12475 PF00132 Bacterial transferase hexapeptide (six repeats) JI729_12480 PF07561 Domain of Unknown Function (DUF1540) JI729_12490 PF00067 Cytochrome P450 JI729_12505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_12505 PF00989 PAS fold JI729_12505 PF13426 PAS domain JI729_12505 PF13188 PAS domain JI729_12505 PF00512 His Kinase A (phospho-acceptor) domain JI729_12510 PF00905 Penicillin binding protein transpeptidase domain JI729_12510 PF03717 Penicillin-binding Protein dimerisation domain JI729_12515 PF10502 Signal peptidase, peptidase S26 JI729_12520 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase JI729_12525 PF01177 Asp/Glu/Hydantoin racemase JI729_12530 PF07155 ECF-type riboflavin transporter, S component JI729_12535 PF00005 ABC transporter JI729_12535 PF12558 ATP-binding cassette cobalt transporter JI729_12550 PF00512 His Kinase A (phospho-acceptor) domain JI729_12550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_12595 PF04229 GrpB protein JI729_12600 PF00107 Zinc-binding dehydrogenase JI729_12600 PF08240 Alcohol dehydrogenase GroES-like domain JI729_12605 PF01569 PAP2 superfamily JI729_12610 PF03717 Penicillin-binding Protein dimerisation domain JI729_12610 PF03793 PASTA domain JI729_12610 PF00905 Penicillin binding protein transpeptidase domain JI729_12615 PF08361 MAATS-type transcriptional repressor, C-terminal region JI729_12615 PF00440 Bacterial regulatory proteins, tetR family JI729_12665 PF07690 Major Facilitator Superfamily JI729_12670 PF07690 Major Facilitator Superfamily JI729_12685 PF03009 Glycerophosphoryl diester phosphodiesterase family JI729_12705 PF00392 Bacterial regulatory proteins, gntR family JI729_12705 PF00155 Aminotransferase class I and II JI729_12710 PF00892 EamA-like transporter family JI729_12715 PF01270 Glycosyl hydrolases family 8 JI729_12720 PF01156 Inosine-uridine preferring nucleoside hydrolase JI729_12730 PF01784 NIF3 (NGG1p interacting factor 3) JI729_12735 PF00293 NUDIX domain JI729_12745 PF00144 Beta-lactamase JI729_12755 PF07690 Major Facilitator Superfamily JI729_12765 PF00293 NUDIX domain JI729_12765 PF09297 NADH pyrophosphatase zinc ribbon domain JI729_12770 PF02768 DNA polymerase III beta subunit, C-terminal domain JI729_12770 PF02767 DNA polymerase III beta subunit, central domain JI729_12770 PF00712 DNA polymerase III beta subunit, N-terminal domain JI729_12780 PF12706 Beta-lactamase superfamily domain JI729_12790 PF09234 Domain of unknown function (DUF1963) JI729_12810 PF01734 Patatin-like phospholipase JI729_12815 PF08000 Bacterial PH domain JI729_12825 PF12867 DinB superfamily JI729_12840 PF02673 Bacitracin resistance protein BacA JI729_12850 PF01541 GIY-YIG catalytic domain JI729_12890 PF01266 FAD dependent oxidoreductase JI729_12920 PF13419 Haloacid dehalogenase-like hydrolase JI729_12925 PF00072 Response regulator receiver domain JI729_12925 PF00486 Transcriptional regulatory protein, C terminal JI729_12930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_12930 PF00989 PAS fold JI729_12930 PF16736 Single Cache-like JI729_12930 PF00512 His Kinase A (phospho-acceptor) domain JI729_12945 PF00005 ABC transporter JI729_12950 PF02687 FtsX-like permease family JI729_12950 PF12704 MacB-like periplasmic core domain JI729_12960 PF07859 alpha/beta hydrolase fold JI729_12965 PF00282 Pyridoxal-dependent decarboxylase conserved domain JI729_12970 PF13193 AMP-binding enzyme C-terminal domain JI729_12970 PF00501 AMP-binding enzyme JI729_12970 PF00550 Phosphopantetheine attachment site JI729_12970 PF00668 Condensation domain JI729_12980 PF03714 Bacterial pullanase-associated domain JI729_12980 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JI729_12980 PF00128 Alpha amylase, catalytic domain JI729_12985 PF07504 Fungalysin/Thermolysin Propeptide Motif JI729_12985 PF02868 Thermolysin metallopeptidase, alpha-helical domain JI729_12985 PF01447 Thermolysin metallopeptidase, catalytic domain JI729_12985 PF03413 Peptidase propeptide and YPEB domain JI729_12990 PF02872 5'-nucleotidase, C-terminal domain JI729_12990 PF00149 Calcineurin-like phosphoesterase JI729_13005 PF00344 SecY translocase JI729_13010 PF00892 EamA-like transporter family JI729_13015 PF00155 Aminotransferase class I and II JI729_13015 PF00392 Bacterial regulatory proteins, gntR family JI729_13020 PF00561 alpha/beta hydrolase fold JI729_13045 PF06081 Aromatic acid exporter family member 1 JI729_13045 PF06081 Aromatic acid exporter family member 1 JI729_13060 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) JI729_13065 PF03413 Peptidase propeptide and YPEB domain JI729_13065 PF14620 YpeB sporulation JI729_13070 PF01471 Putative peptidoglycan binding domain JI729_13070 PF07486 Cell Wall Hydrolase JI729_13090 PF03301 Tryptophan 2,3-dioxygenase JI729_13095 PF04199 Putative cyclase JI729_13100 PF00266 Aminotransferase class-V JI729_13105 PF00440 Bacterial regulatory proteins, tetR family JI729_13105 PF08359 YsiA-like protein, C-terminal region JI729_13110 PF00293 NUDIX domain JI729_13110 PF13344 Haloacid dehalogenase-like hydrolase JI729_13135 PF02954 Bacterial regulatory protein, Fis family JI729_13135 PF01590 GAF domain JI729_13135 PF00158 Sigma-54 interaction domain JI729_13145 PF13302 Acetyltransferase (GNAT) domain JI729_13150 PF08220 DeoR-like helix-turn-helix domain JI729_13150 PF00455 DeoR C terminal sensor domain JI729_13165 PF02082 Transcriptional regulator JI729_13185 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JI729_13185 PF07992 Pyridine nucleotide-disulphide oxidoreductase JI729_13190 PF02817 e3 binding domain JI729_13190 PF00364 Biotin-requiring enzyme JI729_13190 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JI729_13195 PF02780 Transketolase, C-terminal domain JI729_13195 PF02779 Transketolase, pyrimidine binding domain JI729_13200 PF00676 Dehydrogenase E1 component JI729_13210 PF00106 short chain dehydrogenase JI729_13220 PF00293 NUDIX domain JI729_13220 PF09297 NADH pyrophosphatase zinc ribbon domain JI729_13250 PF00528 Binding-protein-dependent transport system inner membrane component JI729_13255 PF00005 ABC transporter JI729_13255 PF00571 CBS domain JI729_13260 PF04069 Substrate binding domain of ABC-type glycine betaine transport system JI729_13265 PF00574 Clp protease JI729_13280 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) JI729_13285 PF13673 Acetyltransferase (GNAT) domain JI729_13290 PF18416 N-acetylglucosamine binding protein domain 2 JI729_13290 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading JI729_13295 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase JI729_13300 PF03781 Sulfatase-modifying factor enzyme 1 JI729_13305 PF01202 Shikimate kinase JI729_13315 PF10990 Protein of unknown function (DUF2809) JI729_13320 PF08241 Methyltransferase domain JI729_13325 PF04237 YjbR JI729_13370 PF00583 Acetyltransferase (GNAT) family JI729_13375 PF13538 UvrD-like helicase C-terminal domain JI729_13390 PF00570 HRDC domain JI729_13390 PF09382 RQC domain JI729_13390 PF00270 DEAD/DEAH box helicase JI729_13390 PF16124 RecQ zinc-binding JI729_13390 PF00271 Helicase conserved C-terminal domain JI729_13420 PF12123 N-acetylmuramoyl-l-alanine amidase JI729_13420 PF01510 N-acetylmuramoyl-L-alanine amidase JI729_13440 PF01368 DHH family JI729_13440 PF02833 DHHA2 domain JI729_13445 PF18416 N-acetylglucosamine binding protein domain 2 JI729_13445 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading JI729_13460 PF02627 Carboxymuconolactone decarboxylase family JI729_13465 PF01235 Sodium:alanine symporter family JI729_13470 PF00171 Aldehyde dehydrogenase family JI729_13475 PF00701 Dihydrodipicolinate synthetase family JI729_13480 PF05544 Proline racemase JI729_13485 PF05544 Proline racemase JI729_13490 PF01266 FAD dependent oxidoreductase JI729_13495 PF13426 PAS domain JI729_13495 PF02954 Bacterial regulatory protein, Fis family JI729_13495 PF00158 Sigma-54 interaction domain JI729_13500 PF07992 Pyridine nucleotide-disulphide oxidoreductase JI729_13500 PF04324 BFD-like [2Fe-2S] binding domain JI729_13510 PF04324 BFD-like [2Fe-2S] binding domain JI729_13510 PF07992 Pyridine nucleotide-disulphide oxidoreductase JI729_13525 PF08876 Domain of unknown function (DUF1836) JI729_13535 PF01966 HD domain JI729_13540 PF09335 SNARE associated Golgi protein JI729_13550 PF04914 DltD protein JI729_13560 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JI729_13565 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain JI729_13565 PF00877 NlpC/P60 family JI729_13570 PF13378 Enolase C-terminal domain-like JI729_13570 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JI729_13585 PF00248 Aldo/keto reductase family JI729_13590 PF01965 DJ-1/PfpI family JI729_13620 PF02129 X-Pro dipeptidyl-peptidase (S15 family) JI729_13620 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain JI729_13630 PF00512 His Kinase A (phospho-acceptor) domain JI729_13630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_13630 PF00672 HAMP domain JI729_13635 PF00486 Transcriptional regulatory protein, C terminal JI729_13635 PF00072 Response regulator receiver domain JI729_13655 PF13419 Haloacid dehalogenase-like hydrolase JI729_13660 PF01048 Phosphorylase superfamily JI729_13665 PF03808 Glycosyl transferase WecB/TagA/CpsF family JI729_13670 PF01432 Peptidase family M3 JI729_13670 PF08439 Oligopeptidase F JI729_13675 PF02645 Uncharacterised protein, DegV family COG1307 JI729_13680 PF07552 Spore Coat Protein X and V domain JI729_13715 PF07690 Major Facilitator Superfamily JI729_13725 PF04519 Polymer-forming cytoskeletal JI729_13730 PF13171 Protein of unknown function (DUF4004) JI729_13735 PF12793 Sugar transport-related sRNA regulator N-term JI729_13735 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JI729_13740 PF07690 Major Facilitator Superfamily JI729_13765 PF04226 Transglycosylase associated protein JI729_13815 PF00155 Aminotransferase class I and II JI729_13820 PF07977 FabA-like domain JI729_13825 PF03630 Fumble JI729_13845 PF00005 ABC transporter JI729_13895 PF01594 AI-2E family transporter JI729_13905 PF00296 Luciferase-like monooxygenase JI729_13910 PF00528 Binding-protein-dependent transport system inner membrane component JI729_13915 PF09084 NMT1/THI5 like JI729_13920 PF00005 ABC transporter JI729_13945 PF02522 Aminoglycoside 3-N-acetyltransferase JI729_13965 PF13536 Putative multidrug resistance efflux transporter JI729_13970 PF12867 DinB superfamily JI729_13990 PF08713 DNA alkylation repair enzyme JI729_13995 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JI729_14005 PF01522 Polysaccharide deacetylase JI729_14010 PF03741 Integral membrane protein TerC family JI729_14015 PF00884 Sulfatase JI729_14020 PF12848 ABC transporter JI729_14020 PF00005 ABC transporter JI729_14025 PF03176 MMPL family JI729_14030 PF00440 Bacterial regulatory proteins, tetR family JI729_14030 PF16295 Tetracyclin repressor-like, C-terminal domain JI729_14040 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JI729_14045 PF01842 ACT domain JI729_14045 PF02153 Prephenate dehydrogenase JI729_14050 PF00155 Aminotransferase class I and II JI729_14055 PF01264 Chorismate synthase JI729_14060 PF01817 Chorismate mutase type II JI729_14060 PF00793 DAHP synthetase I family JI729_14080 PF01636 Phosphotransferase enzyme family JI729_14100 PF01476 LysM domain JI729_14100 PF06725 3D domain JI729_14110 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JI729_14120 PF06039 Malate:quinone oxidoreductase (Mqo) JI729_14125 PF13407 Periplasmic binding protein domain JI729_14130 PF02653 Branched-chain amino acid transport system / permease component JI729_14135 PF02653 Branched-chain amino acid transport system / permease component JI729_14140 PF00005 ABC transporter JI729_14145 PF04198 Putative sugar-binding domain JI729_14145 PF00325 Bacterial regulatory proteins, crp family JI729_14150 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JI729_14150 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JI729_14160 PF01791 DeoC/LacD family aldolase JI729_14165 PF03992 Antibiotic biosynthesis monooxygenase JI729_14185 PF01773 Na+ dependent nucleoside transporter N-terminus JI729_14185 PF07662 Na+ dependent nucleoside transporter C-terminus JI729_14190 PF00171 Aldehyde dehydrogenase family JI729_14195 PF00696 Amino acid kinase family JI729_14195 PF01472 PUA domain JI729_14200 PF14748 Pyrroline-5-carboxylate reductase dimerisation JI729_14200 PF03807 NADP oxidoreductase coenzyme F420-dependent JI729_14205 PF01546 Peptidase family M20/M25/M40 JI729_14210 PF01614 Bacterial transcriptional regulator JI729_14210 PF09339 IclR helix-turn-helix domain JI729_14215 PF00324 Amino acid permease JI729_14225 PF00487 Fatty acid desaturase JI729_14230 PF05547 Immune inhibitor A peptidase M6 JI729_14235 PF04294 VanW like protein JI729_14240 PF00245 Alkaline phosphatase JI729_14245 PF11188 Protein of unknown function (DUF2975) JI729_14250 PF13443 Cro/C1-type HTH DNA-binding domain JI729_14275 PF13302 Acetyltransferase (GNAT) domain JI729_14280 PF12681 Glyoxalase-like domain JI729_14300 PF07726 ATPase family associated with various cellular activities (AAA) JI729_14300 PF17863 AAA lid domain JI729_14315 PF07690 Major Facilitator Superfamily JI729_14325 PF00535 Glycosyl transferase family 2 JI729_14335 PF00535 Glycosyl transferase family 2 JI729_14340 PF00535 Glycosyl transferase family 2 JI729_14350 PF00202 Aminotransferase class-III JI729_14355 PF00199 Catalase JI729_14355 PF06628 Catalase-related immune-responsive JI729_14360 PF01752 Collagenase JI729_14360 PF08453 Peptidase family M9 N-terminal JI729_14360 PF04151 Bacterial pre-peptidase C-terminal domain JI729_14360 PF18496 Collagenase G catalytic helper subdomain JI729_14370 PF13382 Adenine deaminase C-terminal domain JI729_14370 PF01979 Amidohydrolase family JI729_14375 PF00144 Beta-lactamase JI729_14395 PF07726 ATPase family associated with various cellular activities (AAA) JI729_14395 PF17863 AAA lid domain JI729_14460 PF14436 Bacterial EndoU nuclease JI729_14460 PF04740 LXG domain of WXG superfamily JI729_14480 PF00881 Nitroreductase family JI729_14485 PF01047 MarR family JI729_14490 PF14492 Elongation Factor G, domain II JI729_14490 PF00679 Elongation factor G C-terminus JI729_14490 PF00009 Elongation factor Tu GTP binding domain JI729_14490 PF03764 Elongation factor G, domain IV JI729_14500 PF00293 NUDIX domain JI729_14505 PF05406 WGR domain JI729_14510 PF16363 GDP-mannose 4,6 dehydratase JI729_14520 PF12833 Helix-turn-helix domain JI729_14525 PF11734 TilS substrate C-terminal domain JI729_14525 PF14437 MafB19-like deaminase JI729_14525 PF01171 PP-loop family JI729_14535 PF00583 Acetyltransferase (GNAT) family JI729_14550 PF00892 EamA-like transporter family JI729_14555 PF00392 Bacterial regulatory proteins, gntR family JI729_14555 PF00155 Aminotransferase class I and II JI729_14560 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 JI729_14565 PF13031 Protein of unknown function (DUF3892) JI729_14570 PF00512 His Kinase A (phospho-acceptor) domain JI729_14570 PF00672 HAMP domain JI729_14575 PF00072 Response regulator receiver domain JI729_14575 PF00486 Transcriptional regulatory protein, C terminal JI729_14580 PF00561 alpha/beta hydrolase fold JI729_14610 PF01925 Sulfite exporter TauE/SafE JI729_14620 PF00324 Amino acid permease JI729_14630 PF08713 DNA alkylation repair enzyme JI729_14650 PF00293 NUDIX domain JI729_14655 PF04989 Cephalosporin hydroxylase JI729_14660 PF10502 Signal peptidase, peptidase S26 JI729_14665 PF03717 Penicillin-binding Protein dimerisation domain JI729_14665 PF00905 Penicillin binding protein transpeptidase domain JI729_14675 PF02146 Sir2 family JI729_14680 PF01470 Pyroglutamyl peptidase JI729_14695 PF03746 LamB/YcsF family JI729_14700 PF02626 Carboxyltransferase domain, subdomain A and B JI729_14705 PF02682 Carboxyltransferase domain, subdomain C and D JI729_14710 PF09339 IclR helix-turn-helix domain JI729_14710 PF01614 Bacterial transcriptional regulator JI729_14715 PF10502 Signal peptidase, peptidase S26 JI729_14720 PF03932 CutC family JI729_14735 PF02770 Acyl-CoA dehydrogenase, middle domain JI729_14735 PF08028 Acyl-CoA dehydrogenase, C-terminal domain JI729_14735 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JI729_14750 PF07670 Nucleoside recognition JI729_14765 PF02915 Rubrerythrin JI729_14780 PF00440 Bacterial regulatory proteins, tetR family JI729_14785 PF00391 PEP-utilising enzyme, mobile domain JI729_14785 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain JI729_14795 PF00753 Metallo-beta-lactamase superfamily JI729_14800 PF10710 Protein of unknown function (DUF2512) JI729_14805 PF11553 Protein of unknown function (DUF3231) JI729_14810 PF00269 Small, acid-soluble spore proteins, alpha/beta type JI729_14815 PF13823 Alcohol dehydrogenase GroES-associated JI729_14815 PF00107 Zinc-binding dehydrogenase JI729_14815 PF08240 Alcohol dehydrogenase GroES-like domain JI729_14825 PF10415 Fumarase C C-terminus JI729_14825 PF00206 Lyase JI729_14830 PF17763 Glutaminase/Asparaginase C-terminal domain JI729_14830 PF00710 Asparaginase, N-terminal JI729_14835 PF01381 Helix-turn-helix JI729_14855 PF05504 Spore germination B3/ GerAC like, C-terminal JI729_14860 PF03845 Spore germination protein JI729_14865 PF03323 Bacillus/Clostridium GerA spore germination protein JI729_14875 PF13426 PAS domain JI729_14875 PF13188 PAS domain JI729_14875 PF00989 PAS fold JI729_14875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_14875 PF00512 His Kinase A (phospho-acceptor) domain JI729_14880 PF05791 Bacillus haemolytic enterotoxin (HBL) JI729_14885 PF05791 Bacillus haemolytic enterotoxin (HBL) JI729_14900 PF12833 Helix-turn-helix domain JI729_14900 PF17853 GGDEF-like domain JI729_14910 PF00269 Small, acid-soluble spore proteins, alpha/beta type JI729_14915 PF01541 GIY-YIG catalytic domain JI729_14915 PF08459 UvrC Helix-hairpin-helix N-terminal JI729_14915 PF02151 UvrB/uvrC motif JI729_14915 PF12826 Helix-hairpin-helix motif JI729_14920 PF13520 Amino acid permease JI729_14930 PF13564 DoxX-like family JI729_14935 PF03949 Malic enzyme, NAD binding domain JI729_14935 PF00390 Malic enzyme, N-terminal domain JI729_14950 PF03845 Spore germination protein JI729_14955 PF03323 Bacillus/Clostridium GerA spore germination protein JI729_14960 PF08664 YcbB domain JI729_14960 PF00072 Response regulator receiver domain JI729_14965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_14970 PF04960 Glutaminase JI729_14975 PF01235 Sodium:alanine symporter family JI729_14990 PF00144 Beta-lactamase JI729_15000 PF17936 Bacterial Ig domain JI729_15000 PF02872 5'-nucleotidase, C-terminal domain JI729_15000 PF00149 Calcineurin-like phosphoesterase JI729_15005 PF00561 alpha/beta hydrolase fold JI729_15010 PF00857 Isochorismatase family JI729_15020 PF03466 LysR substrate binding domain JI729_15020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JI729_15025 PF01047 MarR family JI729_15030 PF01544 CorA-like Mg2+ transporter protein JI729_15050 PF12146 Serine aminopeptidase, S33 JI729_15050 PF13026 Protein of unknown function (DUF3887) JI729_15065 PF03073 TspO/MBR family JI729_15070 PF00875 DNA photolyase JI729_15070 PF03441 FAD binding domain of DNA photolyase JI729_15080 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) JI729_15085 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JI729_15085 PF00361 Proton-conducting membrane transporter JI729_15090 PF10057 Uncharacterized conserved protein (DUF2294) JI729_15095 PF01522 Polysaccharide deacetylase JI729_15100 PF01520 N-acetylmuramoyl-L-alanine amidase JI729_15100 PF08239 Bacterial SH3 domain JI729_15105 PF16736 Single Cache-like JI729_15105 PF00512 His Kinase A (phospho-acceptor) domain JI729_15105 PF00989 PAS fold JI729_15105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_15110 PF00486 Transcriptional regulatory protein, C terminal JI729_15110 PF00072 Response regulator receiver domain JI729_15125 PF10842 Protein of unknown function (DUF2642) JI729_15140 PF02559 CarD-like/TRCF domain JI729_15155 PF12146 Serine aminopeptidase, S33 JI729_15155 PF13026 Protein of unknown function (DUF3887) JI729_15165 PF00144 Beta-lactamase JI729_15170 PF00144 Beta-lactamase JI729_15175 PF00892 EamA-like transporter family JI729_15185 PF13091 PLD-like domain JI729_15190 PF01040 UbiA prenyltransferase family JI729_15210 PF01451 Low molecular weight phosphotyrosine protein phosphatase JI729_15215 PF01758 Sodium Bile acid symporter family JI729_15220 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JI729_15225 PF01022 Bacterial regulatory protein, arsR family JI729_15235 PF01872 RibD C-terminal domain JI729_15240 PF00550 Phosphopantetheine attachment site JI729_15240 PF07993 Male sterility protein JI729_15245 PF00440 Bacterial regulatory proteins, tetR family JI729_15245 PF18665 Tetracyclin repressor-like, C-terminal domain JI729_15260 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JI729_15300 PF00067 Cytochrome P450 JI729_15300 PF00175 Oxidoreductase NAD-binding domain JI729_15300 PF00258 Flavodoxin JI729_15300 PF00667 FAD binding domain JI729_15305 PF07690 Major Facilitator Superfamily JI729_15320 PF00291 Pyridoxal-phosphate dependent enzyme JI729_15330 PF01139 tRNA-splicing ligase RtcB JI729_15345 PF01510 N-acetylmuramoyl-L-alanine amidase JI729_15345 PF12123 N-acetylmuramoyl-l-alanine amidase JI729_15485 PF00772 DnaB-like helicase N terminal domain JI729_15485 PF03796 DnaB-like helicase C terminal domain JI729_15515 PF10549 ORF11CD3 domain JI729_15515 PF09669 Phage regulatory protein Rha (Phage_pRha) JI729_15575 PF01726 LexA DNA binding domain JI729_15575 PF00717 Peptidase S24-like JI729_15580 PF00239 Resolvase, N terminal domain JI729_15580 PF02796 Helix-turn-helix domain of resolvase JI729_15600 PF00005 ABC transporter JI729_15605 PF02687 FtsX-like permease family JI729_15620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_15620 PF00512 His Kinase A (phospho-acceptor) domain JI729_15620 PF00672 HAMP domain JI729_15625 PF00072 Response regulator receiver domain JI729_15625 PF00486 Transcriptional regulatory protein, C terminal JI729_15630 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JI729_15630 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JI729_15655 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JI729_15655 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JI729_15655 PF01842 ACT domain JI729_15660 PF00266 Aminotransferase class-V JI729_15695 PF01510 N-acetylmuramoyl-L-alanine amidase JI729_15695 PF01476 LysM domain JI729_15695 PF01471 Putative peptidoglycan binding domain JI729_15945 PF04634 Protein of unknown function, DUF600 JI729_16025 PF02557 D-alanyl-D-alanine carboxypeptidase JI729_16030 PF09587 Bacterial capsule synthesis protein PGA_cap JI729_16035 PF14044 NETI protein JI729_16040 PF07690 Major Facilitator Superfamily JI729_16050 PF12697 Alpha/beta hydrolase family JI729_16055 PF01047 MarR family JI729_16060 PF07690 Major Facilitator Superfamily JI729_16075 PF02667 Short chain fatty acid transporter JI729_16085 PF02525 Flavodoxin-like fold JI729_16105 PF14256 YwiC-like protein JI729_16115 PF00005 ABC transporter JI729_16135 PF03737 Aldolase/RraA JI729_16140 PF03606 C4-dicarboxylate anaerobic carrier JI729_16145 PF04231 Endonuclease I JI729_16160 PF04073 Aminoacyl-tRNA editing domain JI729_16165 PF03129 Anticodon binding domain JI729_16165 PF13393 Histidyl-tRNA synthetase JI729_16180 PF01638 HxlR-like helix-turn-helix JI729_16185 PF00881 Nitroreductase family JI729_16195 PF00224 Pyruvate kinase, barrel domain JI729_16195 PF02887 Pyruvate kinase, alpha/beta domain JI729_16195 PF00391 PEP-utilising enzyme, mobile domain JI729_16225 PF00005 ABC transporter JI729_16250 PF13419 Haloacid dehalogenase-like hydrolase JI729_16260 PF13350 Tyrosine phosphatase family JI729_16275 PF00293 NUDIX domain JI729_16275 PF13344 Haloacid dehalogenase-like hydrolase JI729_16280 PF00579 tRNA synthetases class I (W and Y) JI729_16285 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase JI729_16285 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain JI729_16285 PF13288 DXP reductoisomerase C-terminal domain JI729_16290 PF01594 AI-2E family transporter JI729_16330 PF07690 Major Facilitator Superfamily JI729_16350 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JI729_16360 PF03471 Transporter associated domain JI729_16360 PF00571 CBS domain JI729_16360 PF01595 Cyclin M transmembrane N-terminal domain JI729_16365 PF13411 MerR HTH family regulatory protein JI729_16375 PF00483 Nucleotidyl transferase JI729_16380 PF16363 GDP-mannose 4,6 dehydratase JI729_16385 PF08421 Putative zinc binding domain JI729_16385 PF08484 C-methyltransferase C-terminal domain JI729_16390 PF01370 NAD dependent epimerase/dehydratase family JI729_16405 PF00892 EamA-like transporter family JI729_16415 PF00805 Pentapeptide repeats (8 copies) JI729_16420 PF06906 Protein of unknown function (DUF1272) JI729_16425 PF10282 Lactonase, 7-bladed beta-propeller JI729_16430 PF02782 FGGY family of carbohydrate kinases, C-terminal domain JI729_16430 PF00370 FGGY family of carbohydrate kinases, N-terminal domain JI729_16435 PF02447 GntP family permease JI729_16440 PF00923 Transaldolase/Fructose-6-phosphate aldolase JI729_16445 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JI729_16445 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain JI729_16450 PF02780 Transketolase, C-terminal domain JI729_16450 PF00456 Transketolase, thiamine diphosphate binding domain JI729_16450 PF02779 Transketolase, pyrimidine binding domain JI729_16455 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain JI729_16455 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain JI729_16465 PF00109 Beta-ketoacyl synthase, N-terminal domain JI729_16465 PF00698 Acyl transferase domain JI729_16465 PF14765 Polyketide synthase dehydratase JI729_16465 PF00550 Phosphopantetheine attachment site JI729_16465 PF16197 Ketoacyl-synthetase C-terminal extension JI729_16465 PF00107 Zinc-binding dehydrogenase JI729_16465 PF08240 Alcohol dehydrogenase GroES-like domain JI729_16465 PF02801 Beta-ketoacyl synthase, C-terminal domain JI729_16465 PF08659 KR domain JI729_16470 PF07504 Fungalysin/Thermolysin Propeptide Motif JI729_16470 PF02868 Thermolysin metallopeptidase, alpha-helical domain JI729_16470 PF01447 Thermolysin metallopeptidase, catalytic domain JI729_16470 PF03413 Peptidase propeptide and YPEB domain JI729_16480 PF12729 Four helix bundle sensory module for signal transduction JI729_16480 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JI729_16480 PF00672 HAMP domain JI729_16485 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) JI729_16490 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JI729_16490 PF01872 RibD C-terminal domain JI729_16495 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JI729_16495 PF00925 GTP cyclohydrolase II JI729_16500 PF01638 HxlR-like helix-turn-helix JI729_16510 PF03928 Haem-degrading JI729_16545 PF03960 ArsC family JI729_16550 PF00392 Bacterial regulatory proteins, gntR family JI729_16550 PF07702 UTRA domain JI729_16555 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JI729_16555 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JI729_16595 PF02567 Phenazine biosynthesis-like protein JI729_16605 PF13302 Acetyltransferase (GNAT) domain JI729_16610 PF13193 AMP-binding enzyme C-terminal domain JI729_16610 PF00501 AMP-binding enzyme JI729_16615 PF02525 Flavodoxin-like fold JI729_16620 PF01638 HxlR-like helix-turn-helix JI729_16630 PF01022 Bacterial regulatory protein, arsR family JI729_16635 PF01522 Polysaccharide deacetylase JI729_16640 PF12791 Anti-sigma factor N-terminus JI729_16645 PF04542 Sigma-70 region 2 JI729_16650 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 JI729_16650 PF00535 Glycosyl transferase family 2 JI729_16670 PF01810 LysE type translocator JI729_16690 PF01061 ABC-2 type transporter JI729_16695 PF00005 ABC transporter JI729_16695 PF13732 Domain of unknown function (DUF4162) JI729_16710 PF03063 Prismane/CO dehydrogenase family JI729_16715 PF00753 Metallo-beta-lactamase superfamily JI729_16720 PF01183 Glycosyl hydrolases family 25 JI729_16720 PF01471 Putative peptidoglycan binding domain JI729_16730 PF12650 Domain of unknown function (DUF3784) JI729_16780 PF00753 Metallo-beta-lactamase superfamily JI729_16790 PF00324 Amino acid permease JI729_16795 PF07690 Major Facilitator Superfamily JI729_16820 PF02585 GlcNAc-PI de-N-acetylase JI729_16825 PF08830 Protein of unknown function (DUF1806) JI729_16830 PF03600 Citrate transporter JI729_16845 PF01497 Periplasmic binding protein JI729_16850 PF01032 FecCD transport family JI729_16855 PF01032 FecCD transport family JI729_16860 PF05675 Protein of unknown function (DUF817) JI729_16865 PF13170 Protein of unknown function (DUF4003) JI729_16880 PF10901 Protein of unknown function (DUF2690) JI729_16890 PF03466 LysR substrate binding domain JI729_16890 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JI729_16895 PF08240 Alcohol dehydrogenase GroES-like domain JI729_16895 PF00107 Zinc-binding dehydrogenase JI729_16910 PF00488 MutS domain V JI729_16910 PF01713 Smr domain JI729_16920 PF09154 Domain of unknown function (DUF1939) JI729_16920 PF00128 Alpha amylase, catalytic domain JI729_16925 PF00797 N-acetyltransferase JI729_16930 PF01432 Peptidase family M3 JI729_16930 PF08439 Oligopeptidase F JI729_16935 PF04371 Porphyromonas-type peptidyl-arginine deiminase JI729_16950 PF06146 Phosphate-starvation-inducible E JI729_16955 PF04371 Porphyromonas-type peptidyl-arginine deiminase JI729_16960 PF00144 Beta-lactamase JI729_16975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JI729_16975 PF03466 LysR substrate binding domain JI729_16985 PF03009 Glycerophosphoryl diester phosphodiesterase family JI729_16990 PF01494 FAD binding domain JI729_16995 PF01022 Bacterial regulatory protein, arsR family JI729_17000 PF08240 Alcohol dehydrogenase GroES-like domain JI729_17000 PF00107 Zinc-binding dehydrogenase JI729_17005 PF02696 Uncharacterized ACR, YdiU/UPF0061 family JI729_17010 PF17874 MalT-like TPR region JI729_17010 PF18801 response regulator aspartate phosphatase H, N terminal JI729_17020 PF04299 Putative FMN-binding domain JI729_17025 PF04229 GrpB protein JI729_17025 PF13673 Acetyltransferase (GNAT) domain JI729_17035 PF01758 Sodium Bile acid symporter family JI729_17040 PF01565 FAD binding domain JI729_17040 PF02913 FAD linked oxidases, C-terminal domain JI729_17065 PF01066 CDP-alcohol phosphatidyltransferase JI729_17070 PF00581 Rhodanese-like domain JI729_17070 PF00753 Metallo-beta-lactamase superfamily JI729_17075 PF07992 Pyridine nucleotide-disulphide oxidoreductase JI729_17085 PF00483 Nucleotidyl transferase JI729_17095 PF01370 NAD dependent epimerase/dehydratase family JI729_17100 PF16363 GDP-mannose 4,6 dehydratase JI729_17105 PF07282 Putative transposase DNA-binding domain JI729_17105 PF01385 Probable transposase JI729_17105 PF12323 Helix-turn-helix domain JI729_17110 PF18801 response regulator aspartate phosphatase H, N terminal JI729_17120 PF02743 Cache domain JI729_17120 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JI729_17120 PF00672 HAMP domain JI729_17145 PF00512 His Kinase A (phospho-acceptor) domain JI729_17145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_17150 PF00072 Response regulator receiver domain JI729_17150 PF00486 Transcriptional regulatory protein, C terminal JI729_17155 PF00975 Thioesterase domain JI729_17155 PF00501 AMP-binding enzyme JI729_17155 PF13193 AMP-binding enzyme C-terminal domain JI729_17155 PF00550 Phosphopantetheine attachment site JI729_17155 PF00668 Condensation domain JI729_17160 PF00550 Phosphopantetheine attachment site JI729_17160 PF18563 TubC N-terminal docking domain JI729_17160 PF00668 Condensation domain JI729_17160 PF13193 AMP-binding enzyme C-terminal domain JI729_17160 PF00501 AMP-binding enzyme JI729_17165 PF00550 Phosphopantetheine attachment site JI729_17165 PF00668 Condensation domain JI729_17165 PF13193 AMP-binding enzyme C-terminal domain JI729_17165 PF00501 AMP-binding enzyme JI729_17170 PF00975 Thioesterase domain JI729_17175 PF01648 4'-phosphopantetheinyl transferase superfamily JI729_17180 PF07690 Major Facilitator Superfamily JI729_17185 PF01569 PAP2 superfamily JI729_17195 PF00005 ABC transporter JI729_17220 PF03707 Bacterial signalling protein N terminal repeat JI729_17220 PF00563 EAL domain JI729_17220 PF00990 Diguanylate cyclase, GGDEF domain JI729_17225 PF00005 ABC transporter JI729_17225 PF16326 ABC transporter C-terminal domain JI729_17255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_17255 PF00512 His Kinase A (phospho-acceptor) domain JI729_17255 PF00989 PAS fold JI729_17260 PF18496 Collagenase G catalytic helper subdomain JI729_17260 PF08453 Peptidase family M9 N-terminal JI729_17260 PF01752 Collagenase JI729_17265 PF02308 MgtC family JI729_17275 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JI729_17280 PF04294 VanW like protein JI729_17290 PF13039 Protein of unknown function (DUF3900) JI729_17290 PF13037 Domain of unknown function (DUF3898) JI729_17305 PF00313 'Cold-shock' DNA-binding domain JI729_17315 PF00258 Flavodoxin JI729_17325 PF00293 NUDIX domain JI729_17335 PF00132 Bacterial transferase hexapeptide (six repeats) JI729_17345 PF00106 short chain dehydrogenase JI729_17355 PF14698 Argininosuccinate lyase C-terminal JI729_17355 PF00206 Lyase JI729_17365 PF01156 Inosine-uridine preferring nucleoside hydrolase JI729_17370 PF00474 Sodium:solute symporter family JI729_17380 PF00171 Aldehyde dehydrogenase family JI729_17395 PF13249 Squalene-hopene cyclase N-terminal domain JI729_17395 PF13243 Squalene-hopene cyclase C-terminal domain JI729_17400 PF02681 Divergent PAP2 family JI729_17405 PF00892 EamA-like transporter family JI729_17410 PF06961 Protein of unknown function (DUF1294) JI729_17425 PF10609 NUBPL iron-transfer P-loop NTPase JI729_17435 PF02391 MoaE protein JI729_17440 PF03454 MoeA C-terminal region (domain IV) JI729_17440 PF03453 MoeA N-terminal region (domain I and II) JI729_17440 PF00994 Probable molybdopterin binding domain JI729_17445 PF00899 ThiF family JI729_17450 PF01226 Formate/nitrite transporter JI729_17455 PF06463 Molybdenum Cofactor Synthesis C JI729_17455 PF04055 Radical SAM superfamily JI729_17460 PF02634 FdhD/NarQ family JI729_17465 PF10057 Uncharacterized conserved protein (DUF2294) JI729_17470 PF07849 Protein of unknown function (DUF1641) JI729_17475 PF00384 Molybdopterin oxidoreductase JI729_17475 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region JI729_17475 PF00037 4Fe-4S binding domain JI729_17475 PF01568 Molydopterin dinucleotide binding domain JI729_17475 PF04879 Molybdopterin oxidoreductase Fe4S4 domain JI729_17480 PF03323 Bacillus/Clostridium GerA spore germination protein JI729_17525 PF08241 Methyltransferase domain JI729_17530 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JI729_17535 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JI729_17540 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle JI729_17545 PF00375 Sodium:dicarboxylate symporter family JI729_17550 PF03816 Cell envelope-related transcriptional attenuator domain JI729_17560 PF08281 Sigma-70, region 4 JI729_17560 PF04542 Sigma-70 region 2 JI729_17570 PF13732 Domain of unknown function (DUF4162) JI729_17570 PF00005 ABC transporter JI729_17580 PF02894 Oxidoreductase family, C-terminal alpha/beta domain JI729_17580 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JI729_17585 PF00521 DNA gyrase/topoisomerase IV, subunit A JI729_17585 PF03989 DNA gyrase C-terminal domain, beta-propeller JI729_17590 PF00986 DNA gyrase B subunit, carboxyl terminus JI729_17590 PF01751 Toprim domain JI729_17590 PF00204 DNA gyrase B JI729_17590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_17595 PF13380 CoA binding domain JI729_17600 PF13180 PDZ domain JI729_17605 PF00072 Response regulator receiver domain JI729_17605 PF00486 Transcriptional regulatory protein, C terminal JI729_17610 PF04055 Radical SAM superfamily JI729_17615 PF03477 ATP cone domain JI729_17615 PF13597 Anaerobic ribonucleoside-triphosphate reductase JI729_17620 PF02660 Glycerol-3-phosphate acyltransferase JI729_17625 PF01521 Iron-sulphur cluster biosynthesis JI729_17630 PF03061 Thioesterase superfamily JI729_17635 PF00704 Glycosyl hydrolases family 18 JI729_17635 PF01476 LysM domain JI729_17645 PF08177 Small acid-soluble spore protein N family JI729_17650 PF13040 Fur-regulated basic protein B JI729_17655 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JI729_17655 PF07733 Bacterial DNA polymerase III alpha NTPase domain JI729_17655 PF11490 DNA polymerase III polC-type N-terminus II JI729_17655 PF02811 PHP domain JI729_17655 PF00929 Exonuclease JI729_17655 PF01336 OB-fold nucleic acid binding domain JI729_17655 PF14579 Helix-hairpin-helix motif JI729_17660 PF00578 AhpC/TSA family JI729_17670 PF00005 ABC transporter JI729_17670 PF00664 ABC transporter transmembrane region JI729_17675 PF00694 Aconitase C-terminal domain JI729_17675 PF00330 Aconitase family (aconitate hydratase) JI729_17685 PF01522 Polysaccharide deacetylase JI729_17695 PF08179 Small acid-soluble spore protein P family JI729_17705 PF07690 Major Facilitator Superfamily JI729_17715 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JI729_17715 PF01411 tRNA synthetases class II (A) JI729_17715 PF02272 DHHA1 domain JI729_17720 PF00293 NUDIX domain JI729_17720 PF13344 Haloacid dehalogenase-like hydrolase JI729_17740 PF00108 Thiolase, N-terminal domain JI729_17740 PF02803 Thiolase, C-terminal domain JI729_17745 PF00501 AMP-binding enzyme JI729_17745 PF13193 AMP-binding enzyme C-terminal domain JI729_17750 PF02632 BioY family JI729_17755 PF13193 AMP-binding enzyme C-terminal domain JI729_17755 PF00501 AMP-binding enzyme JI729_17760 PF01381 Helix-turn-helix JI729_17780 PF05532 CsbD-like JI729_17800 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JI729_17800 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JI729_17810 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_17810 PF00512 His Kinase A (phospho-acceptor) domain JI729_17810 PF13426 PAS domain JI729_17810 PF00989 PAS fold JI729_17810 PF13188 PAS domain JI729_17815 PF01738 Dienelactone hydrolase family JI729_17820 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JI729_17825 PF00474 Sodium:solute symporter family JI729_17830 PF01645 Conserved region in glutamate synthase JI729_17835 PF00724 NADH:flavin oxidoreductase / NADH oxidase family JI729_17840 PF02559 CarD-like/TRCF domain JI729_17845 PF00491 Arginase family JI729_17850 PF01979 Amidohydrolase family JI729_17855 PF17391 Urocanase N-terminal domain JI729_17855 PF01175 Urocanase Rossmann-like domain JI729_17855 PF17392 Urocanase C-terminal domain JI729_17860 PF00221 Aromatic amino acid lyase JI729_17865 PF09021 HutP JI729_17870 PF01209 ubiE/COQ5 methyltransferase family JI729_17875 PF01965 DJ-1/PfpI family JI729_17890 PF11084 Protein of unknown function (DUF2621) JI729_17910 PF07301 Protein of unknown function (DUF1453) JI729_17915 PF02683 Cytochrome C biogenesis protein transmembrane region JI729_17925 PF01546 Peptidase family M20/M25/M40 JI729_17925 PF07687 Peptidase dimerisation domain JI729_17935 PF00005 ABC transporter JI729_17950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JI729_17950 PF03466 LysR substrate binding domain JI729_17955 PF03788 LrgA family JI729_17960 PF04172 LrgB-like family JI729_17965 PF13344 Haloacid dehalogenase-like hydrolase JI729_17965 PF00293 NUDIX domain JI729_17975 PF01925 Sulfite exporter TauE/SafE JI729_17995 PF01183 Glycosyl hydrolases family 25 JI729_17995 PF08239 Bacterial SH3 domain JI729_18000 PF00664 ABC transporter transmembrane region JI729_18000 PF00005 ABC transporter JI729_18005 PF00664 ABC transporter transmembrane region JI729_18005 PF00005 ABC transporter JI729_18010 PF03672 Uncharacterised protein family (UPF0154) JI729_18015 PF10747 Sporulation inhibitor of replication protein SirA JI729_18020 PF02779 Transketolase, pyrimidine binding domain JI729_18020 PF02780 Transketolase, C-terminal domain JI729_18020 PF00456 Transketolase, thiamine diphosphate binding domain JI729_18025 PF00528 Binding-protein-dependent transport system inner membrane component JI729_18030 PF00528 Binding-protein-dependent transport system inner membrane component JI729_18035 PF00005 ABC transporter JI729_18040 PF00497 Bacterial extracellular solute-binding proteins, family 3 JI729_18045 PF02872 5'-nucleotidase, C-terminal domain JI729_18045 PF00149 Calcineurin-like phosphoesterase JI729_18050 PF05979 Bacterial protein of unknown function (DUF896) JI729_18055 PF00239 Resolvase, N terminal domain JI729_18060 PF00717 Peptidase S24-like JI729_18060 PF01726 LexA DNA binding domain JI729_18075 PF03551 Transcriptional regulator PadR-like family JI729_18085 PF01551 Peptidase family M23 JI729_18085 PF10145 Phage-related minor tail protein JI729_18085 PF01464 Transglycosylase SLT domain JI729_18125 PF01726 LexA DNA binding domain JI729_18125 PF00717 Peptidase S24-like JI729_18130 PF03951 Glutamine synthetase, beta-Grasp domain JI729_18130 PF00120 Glutamine synthetase, catalytic domain JI729_18135 PF13411 MerR HTH family regulatory protein JI729_18140 PF06838 Methionine gamma-lyase JI729_18145 PF13167 GTP-binding GTPase N-terminal JI729_18145 PF01926 50S ribosome-binding GTPase JI729_18145 PF16360 GTP-binding GTPase Middle Region JI729_18150 PF03458 UPF0126 domain JI729_18160 PF17866 AAA lid domain JI729_18160 PF00004 ATPase family associated with various cellular activities (AAA) JI729_18175 PF17209 Hfq protein JI729_18190 PF01476 LysM domain JI729_18190 PF06725 3D domain JI729_18195 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JI729_18195 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 JI729_18200 PF00294 pfkB family carbohydrate kinase JI729_18205 PF08220 DeoR-like helix-turn-helix domain JI729_18205 PF00455 DeoR C terminal sensor domain JI729_18210 PF00465 Iron-containing alcohol dehydrogenase JI729_18215 PF04238 Protein of unknown function (DUF420) JI729_18225 PF00324 Amino acid permease JI729_18230 PF00041 Fibronectin type III domain JI729_18230 PF00704 Glycosyl hydrolases family 18 JI729_18235 PF10518 TAT (twin-arginine translocation) pathway signal sequence JI729_18235 PF00149 Calcineurin-like phosphoesterase JI729_18240 PF01226 Formate/nitrite transporter JI729_18245 PF00216 Bacterial DNA-binding protein JI729_18255 PF00403 Heavy-metal-associated domain JI729_18260 PF00403 Heavy-metal-associated domain JI729_18265 PF02583 Metal-sensitive transcriptional repressor JI729_18275 PF00756 Putative esterase JI729_18280 PF00005 ABC transporter JI729_18285 PF01032 FecCD transport family JI729_18290 PF01032 FecCD transport family JI729_18295 PF01497 Periplasmic binding protein JI729_18300 PF03372 Endonuclease/Exonuclease/phosphatase family JI729_18305 PF12833 Helix-turn-helix domain JI729_18305 PF02805 Metal binding domain of Ada JI729_18310 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain JI729_18310 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain JI729_18315 PF00730 HhH-GPD superfamily base excision DNA repair protein JI729_18315 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain JI729_18320 PF01546 Peptidase family M20/M25/M40 JI729_18320 PF07687 Peptidase dimerisation domain JI729_18340 PF00561 alpha/beta hydrolase fold JI729_18345 PF03707 Bacterial signalling protein N terminal repeat JI729_18345 PF00990 Diguanylate cyclase, GGDEF domain JI729_18345 PF00563 EAL domain JI729_18350 PF03033 Glycosyltransferase family 28 N-terminal domain JI729_18350 PF04101 Glycosyltransferase family 28 C-terminal domain JI729_18360 PF16363 GDP-mannose 4,6 dehydratase JI729_18365 PF08485 Polysaccharide biosynthesis protein C-terminal JI729_18365 PF02719 Polysaccharide biosynthesis protein JI729_18380 PF10787 Uncharacterised protein from bacillus cereus group JI729_18385 PF04172 LrgB-like family JI729_18390 PF03788 LrgA family JI729_18395 PF00155 Aminotransferase class I and II JI729_18395 PF00392 Bacterial regulatory proteins, gntR family JI729_18405 PF00392 Bacterial regulatory proteins, gntR family JI729_18405 PF07702 UTRA domain JI729_18410 PF00232 Glycosyl hydrolase family 1 JI729_18415 PF00388 Phosphatidylinositol-specific phospholipase C, X domain JI729_18420 PF00082 Subtilase family JI729_18425 PF07486 Cell Wall Hydrolase JI729_18435 PF00884 Sulfatase JI729_18440 PF00350 Dynamin family JI729_18450 PF08676 MutL C terminal dimerisation domain JI729_18450 PF01119 DNA mismatch repair protein, C-terminal domain JI729_18455 PF01624 MutS domain I JI729_18455 PF05188 MutS domain II JI729_18455 PF05192 MutS domain III JI729_18455 PF05190 MutS family domain IV JI729_18455 PF00488 MutS domain V JI729_18460 PF10628 Outer spore coat protein E (CotE) JI729_18465 PF06133 Control of competence regulator ComK, YlbF/YmcA JI729_18470 PF01938 TRAM domain JI729_18470 PF04055 Radical SAM superfamily JI729_18470 PF00919 Uncharacterized protein family UPF0004 JI729_18475 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JI729_18480 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II JI729_18480 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg JI729_18480 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase JI729_18485 PF01244 Membrane dipeptidase (Peptidase family M19) JI729_18490 PF04232 Stage V sporulation protein S (SpoVS) JI729_18495 PF13277 YmdB-like protein JI729_18500 PF01966 HD domain JI729_18500 PF00013 KH domain JI729_18500 PF12072 Domain of unknown function (DUF3552) JI729_18505 PF00154 recA bacterial DNA recombination protein JI729_18515 PF00994 Probable molybdopterin binding domain JI729_18515 PF18146 Damage-inducible protein CinA KH domain JI729_18515 PF02464 Competence-damaged protein JI729_18520 PF01066 CDP-alcohol phosphatidyltransferase JI729_18525 PF13464 Domain of unknown function (DUF4115) JI729_18530 PF11868 Protein of unknown function (DUF3388) JI729_18535 PF11588 Protein of unknown function (DUF3243) JI729_18545 PF00675 Insulinase (Peptidase family M16) JI729_18545 PF05193 Peptidase M16 inactive domain JI729_18550 PF05193 Peptidase M16 inactive domain JI729_18555 PF02653 Branched-chain amino acid transport system / permease component JI729_18560 PF02653 Branched-chain amino acid transport system / permease component JI729_18565 PF00005 ABC transporter JI729_18570 PF02608 ABC transporter substrate-binding protein PnrA-like JI729_18575 PF07702 UTRA domain JI729_18575 PF00392 Bacterial regulatory proteins, gntR family JI729_18580 PF09397 Ftsk gamma domain JI729_18580 PF17854 FtsK alpha domain JI729_18580 PF01580 FtsK/SpoIIIE family JI729_18585 PF14035 YlzJ-like protein JI729_18590 PF00574 Clp protease JI729_18595 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JI729_18595 PF17770 Ribonuclease J C-terminal domain JI729_18595 PF00753 Metallo-beta-lactamase superfamily JI729_18600 PF00701 Dihydrodipicolinate synthetase family JI729_18605 PF00696 Amino acid kinase family JI729_18605 PF13840 ACT domain JI729_18610 PF01118 Semialdehyde dehydrogenase, NAD binding domain JI729_18610 PF02774 Semialdehyde dehydrogenase, dimerisation domain JI729_18615 PF02441 Flavoprotein JI729_18620 PF14436 Bacterial EndoU nuclease JI729_18620 PF04740 LXG domain of WXG superfamily JI729_18630 PF01510 N-acetylmuramoyl-L-alanine amidase JI729_18660 PF00313 'Cold-shock' DNA-binding domain JI729_18670 PF00589 Phage integrase family JI729_18715 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JI729_18715 PF16924 Dipicolinate synthase subunit A N-terminal domain JI729_18720 PF05239 PRC-barrel domain JI729_18725 PF05193 Peptidase M16 inactive domain JI729_18725 PF00675 Insulinase (Peptidase family M16) JI729_18730 PF01522 Polysaccharide deacetylase JI729_18735 PF03725 3' exoribonuclease family, domain 2 JI729_18735 PF01138 3' exoribonuclease family, domain 1 JI729_18735 PF00575 S1 RNA binding domain JI729_18735 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain JI729_18735 PF00013 KH domain JI729_18740 PF00312 Ribosomal protein S15 JI729_18745 PF06574 FAD synthetase JI729_18745 PF01687 Riboflavin kinase JI729_18750 PF16198 tRNA pseudouridylate synthase B C-terminal domain JI729_18750 PF01509 TruB family pseudouridylate synthase (N terminal domain) JI729_18755 PF02033 Ribosome-binding factor A JI729_18760 PF04456 Protein of unknown function (DUF503) JI729_18765 PF00009 Elongation factor Tu GTP binding domain JI729_18765 PF04760 Translation initiation factor IF-2, N-terminal region JI729_18765 PF11987 Translation-initiation factor 2 JI729_18770 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family JI729_18775 PF04296 Protein of unknown function (DUF448) JI729_18780 PF13184 NusA-like KH domain JI729_18780 PF00575 S1 RNA binding domain JI729_18780 PF08529 NusA N-terminal domain JI729_18785 PF02576 RimP N-terminal domain JI729_18785 PF17384 RimP C-terminal SH3 domain JI729_18790 PF14480 DNA polymerase III polC-type N-terminus I JI729_18790 PF07733 Bacterial DNA polymerase III alpha NTPase domain JI729_18790 PF02811 PHP domain JI729_18790 PF14579 Helix-hairpin-helix motif JI729_18790 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JI729_18790 PF00929 Exonuclease JI729_18790 PF11490 DNA polymerase III polC-type N-terminus II JI729_18795 PF04073 Aminoacyl-tRNA editing domain JI729_18795 PF03129 Anticodon binding domain JI729_18795 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JI729_18800 PF02163 Peptidase family M50 JI729_18800 PF17820 PDZ domain JI729_18805 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase JI729_18805 PF13288 DXP reductoisomerase C-terminal domain JI729_18805 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain JI729_18815 PF01255 Putative undecaprenyl diphosphate synthase JI729_18820 PF01765 Ribosome recycling factor JI729_18825 PF00696 Amino acid kinase family JI729_18830 PF00889 Elongation factor TS JI729_18835 PF00318 Ribosomal protein S2 JI729_18840 PF08222 CodY helix-turn-helix domain JI729_18840 PF06018 CodY GAF-like domain JI729_18845 PF07724 AAA domain (Cdc48 subfamily) JI729_18845 PF00004 ATPase family associated with various cellular activities (AAA) JI729_18845 PF10431 C-terminal, D2-small domain, of ClpB protein JI729_18850 PF00227 Proteasome subunit JI729_18855 PF02899 Phage integrase, N-terminal SAM-like domain JI729_18855 PF00589 Phage integrase family JI729_18860 PF01134 Glucose inhibited division protein A JI729_18865 PF01396 Topoisomerase DNA binding C4 zinc finger JI729_18865 PF01751 Toprim domain JI729_18865 PF01131 DNA topoisomerase JI729_18870 PF02481 DNA recombination-mediator protein A JI729_18875 PF00549 CoA-ligase JI729_18875 PF02629 CoA binding domain JI729_18880 PF00549 CoA-ligase JI729_18880 PF08442 ATP-grasp domain JI729_18885 PF01351 Ribonuclease HII JI729_18890 PF01926 50S ribosome-binding GTPase JI729_18895 PF10502 Signal peptidase, peptidase S26 JI729_18900 PF01245 Ribosomal protein L19 JI729_18905 PF01746 tRNA (Guanine-1)-methyltransferase JI729_18910 PF05239 PRC-barrel domain JI729_18910 PF01782 RimM N-terminal domain JI729_18920 PF00886 Ribosomal protein S16 JI729_18925 PF02881 SRP54-type protein, helical bundle domain JI729_18925 PF00448 SRP54-type protein, GTPase domain JI729_18925 PF02978 Signal peptide binding domain JI729_18930 PF04297 Putative helix-turn-helix protein, YlxM / p13 like JI729_18935 PF02881 SRP54-type protein, helical bundle domain JI729_18935 PF00448 SRP54-type protein, GTPase domain JI729_18940 PF02463 RecF/RecN/SMC N terminal domain JI729_18940 PF06470 SMC proteins Flexible Hinge Domain JI729_18945 PF00035 Double-stranded RNA binding motif JI729_18945 PF14622 Ribonuclease-III-like JI729_18950 PF00550 Phosphopantetheine attachment site JI729_18960 PF00698 Acyl transferase domain JI729_18965 PF02504 Fatty acid synthesis protein JI729_18970 PF03061 Thioesterase superfamily JI729_18975 PF17191 RecG wedge domain JI729_18975 PF00271 Helicase conserved C-terminal domain JI729_18975 PF00270 DEAD/DEAH box helicase JI729_18980 PF02734 DAK2 domain JI729_18980 PF13684 Dihydroxyacetone kinase family JI729_18985 PF03780 Asp23 family, cell envelope-related function JI729_18990 PF00830 Ribosomal L28 family JI729_18995 PF08183 Stage V sporulation protein family JI729_19000 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain JI729_19000 PF04263 Thiamin pyrophosphokinase, catalytic domain JI729_19005 PF00834 Ribulose-phosphate 3 epimerase family JI729_19010 PF16745 RsgA N-terminal domain JI729_19010 PF03193 RsgA GTPase JI729_19015 PF03793 PASTA domain JI729_19015 PF00069 Protein kinase domain JI729_19025 PF04055 Radical SAM superfamily JI729_19030 PF01189 16S rRNA methyltransferase RsmB/F JI729_19030 PF01029 NusB family JI729_19035 PF00551 Formyl transferase JI729_19035 PF02911 Formyl transferase, C-terminal domain JI729_19040 PF01327 Polypeptide deformylase JI729_19045 PF17764 3′ DNA-binding domain (3′BD) JI729_19045 PF04851 Type III restriction enzyme, res subunit JI729_19045 PF00271 Helicase conserved C-terminal domain JI729_19045 PF18074 Primosomal protein N C-terminal domain JI729_19045 PF18319 PriA DNA helicase Cys-rich region (CRR) domain JI729_19050 PF04127 DNA / pantothenate metabolism flavoprotein JI729_19050 PF02441 Flavoprotein JI729_19055 PF01192 RNA polymerase Rpb6 JI729_19060 PF00625 Guanylate kinase JI729_19065 PF04025 Domain of unknown function (DUF370) JI729_19070 PF03755 YicC-like family, N-terminal region JI729_19070 PF08340 Domain of unknown function (DUF1732) JI729_19075 PF00689 Cation transporting ATPase, C-terminus JI729_19075 PF00690 Cation transporter/ATPase, N-terminus JI729_19080 PF05670 NFACT protein RNA binding domain JI729_19090 PF01321 Creatinase/Prolidase N-terminal domain JI729_19090 PF00557 Metallopeptidase family M24 JI729_19110 PF00156 Phosphoribosyl transferase domain JI729_19115 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family JI729_19120 PF01180 Dihydroorotate dehydrogenase JI729_19125 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B JI729_19130 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain JI729_19130 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JI729_19130 PF02142 MGS-like domain JI729_19135 PF00117 Glutamine amidotransferase class-I JI729_19135 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain JI729_19140 PF01979 Amidohydrolase family JI729_19145 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JI729_19145 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JI729_19150 PF00860 Permease family JI729_19155 PF00156 Phosphoribosyl transferase domain JI729_19160 PF01479 S4 domain JI729_19160 PF00849 RNA pseudouridylate synthase JI729_19165 PF01252 Signal peptidase (SPase) II JI729_19175 PF06827 Zinc finger found in FPG and IleRS JI729_19175 PF00133 tRNA synthetases class I (I, L, M and V) JI729_19175 PF08264 Anticodon-binding domain of tRNA JI729_19180 PF05103 DivIVA protein JI729_19185 PF17774 Putative RNA-binding domain in YlmH JI729_19185 PF01479 S4 domain JI729_19190 PF02325 YGGT family JI729_19195 PF04472 Cell division protein SepF JI729_19200 PF01168 Alanine racemase, N-terminal domain JI729_19205 PF02578 Multi-copper polyphenol oxidoreductase laccase JI729_19210 PF05239 PRC-barrel domain JI729_19215 PF04542 Sigma-70 region 2 JI729_19215 PF04545 Sigma-70, region 4 JI729_19215 PF04539 Sigma-70 region 3 JI729_19220 PF04545 Sigma-70, region 4 JI729_19220 PF04542 Sigma-70 region 2 JI729_19225 PF03419 Sporulation factor SpoIIGA JI729_19230 PF00091 Tubulin/FtsZ family, GTPase domain JI729_19230 PF12327 FtsZ family, C-terminal domain JI729_19235 PF02491 SHS2 domain inserted in FTSA JI729_19240 PF03799 Cell division protein FtsQ JI729_19240 PF08478 POTRA domain, FtsQ-type JI729_19245 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JI729_19245 PF01565 FAD binding domain JI729_19250 PF03033 Glycosyltransferase family 28 N-terminal domain JI729_19250 PF04101 Glycosyltransferase family 28 C-terminal domain JI729_19255 PF01098 Cell cycle protein JI729_19260 PF08245 Mur ligase middle domain JI729_19260 PF02875 Mur ligase family, glutamate ligase domain JI729_19265 PF00953 Glycosyl transferase family 4 JI729_19265 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 JI729_19270 PF02875 Mur ligase family, glutamate ligase domain JI729_19270 PF08245 Mur ligase middle domain JI729_19270 PF01225 Mur ligase family, catalytic domain JI729_19275 PF03717 Penicillin-binding Protein dimerisation domain JI729_19275 PF03793 PASTA domain JI729_19275 PF00905 Penicillin binding protein transpeptidase domain JI729_19280 PF00905 Penicillin binding protein transpeptidase domain JI729_19280 PF03717 Penicillin-binding Protein dimerisation domain JI729_19280 PF03793 PASTA domain JI729_19285 PF04977 Septum formation initiator JI729_19290 PF01795 MraW methylase family JI729_19295 PF10079 Bacillithiol biosynthesis BshC JI729_19300 PF08546 Ketopantoate reductase PanE/ApbA C terminal JI729_19300 PF02558 Ketopantoate reductase PanE/ApbA JI729_19305 PF00583 Acetyltransferase (GNAT) family JI729_19315 PF01783 Ribosomal L32p protein family JI729_19320 PF02620 Large ribosomal RNA subunit accumulation protein YceD JI729_19325 PF05636 HIGH Nucleotidyl Transferase JI729_19330 PF13180 PDZ domain JI729_19330 PF05362 Lon protease (S16) C-terminal proteolytic domain JI729_19335 PF01734 Patatin-like phospholipase JI729_19340 PF07670 Nucleoside recognition JI729_19345 PF01467 Cytidylyltransferase-like JI729_19360 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) JI729_19365 PF06133 Control of competence regulator ComK, YlbF/YmcA JI729_19370 PF00300 Histidine phosphatase superfamily (branch 1) JI729_19375 PF14003 YlbE-like protein JI729_19380 PF14071 Putative coat protein JI729_19385 PF00188 Cysteine-rich secretory protein family JI729_19385 PF14504 CAP-associated N-terminal JI729_19390 PF08868 YugN-like family JI729_19395 PF00795 Carbon-nitrogen hydrolase JI729_19400 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) JI729_19405 PF03626 Prokaryotic Cytochrome C oxidase subunit IV JI729_19410 PF00510 Cytochrome c oxidase subunit III JI729_19415 PF00115 Cytochrome C and Quinol oxidase polypeptide I JI729_19420 PF00034 Cytochrome c JI729_19420 PF00116 Cytochrome C oxidase subunit II, periplasmic domain JI729_19420 PF02790 Cytochrome C oxidase subunit II, transmembrane domain JI729_19425 PF01040 UbiA prenyltransferase family JI729_19430 PF02628 Cytochrome oxidase assembly protein JI729_19435 PF02436 Conserved carboxylase domain JI729_19435 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JI729_19435 PF00289 Biotin carboxylase, N-terminal domain JI729_19435 PF00682 HMGL-like JI729_19435 PF00364 Biotin-requiring enzyme JI729_19435 PF02785 Biotin carboxylase C-terminal domain JI729_19440 PF01098 Cell cycle protein JI729_19445 PF07408 Protein of unknown function (DUF1507) JI729_19455 PF13638 PIN domain JI729_19455 PF02562 PhoH-like protein JI729_19465 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) JI729_19475 PF14036 YlaH-like protein JI729_19480 PF00009 Elongation factor Tu GTP binding domain JI729_19480 PF03144 Elongation factor Tu domain 2 JI729_19480 PF00679 Elongation factor G C-terminus JI729_19480 PF14492 Elongation Factor G, domain II JI729_19490 PF00459 Inositol monophosphatase family JI729_19500 PF06335 Protein of unknown function (DUF1054) JI729_19505 PF05256 Uncharacterised protein family (UPF0223) JI729_19510 PF01276 Orn/Lys/Arg decarboxylase, major domain JI729_19510 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain JI729_19550 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JI729_19550 PF07992 Pyridine nucleotide-disulphide oxidoreductase JI729_19555 PF00364 Biotin-requiring enzyme JI729_19555 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JI729_19555 PF02817 e3 binding domain JI729_19560 PF02779 Transketolase, pyrimidine binding domain JI729_19560 PF02780 Transketolase, C-terminal domain JI729_19565 PF00676 Dehydrogenase E1 component JI729_19575 PF01327 Polypeptide deformylase JI729_19585 PF07288 Protein of unknown function (DUF1447) JI729_19590 PF00753 Metallo-beta-lactamase superfamily JI729_19590 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain JI729_19590 PF17770 Ribonuclease J C-terminal domain JI729_19595 PF02254 TrkA-N domain JI729_19595 PF02080 TrkA-C domain JI729_19605 PF01546 Peptidase family M20/M25/M40 JI729_19605 PF07687 Peptidase dimerisation domain JI729_19610 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal JI729_19610 PF00132 Bacterial transferase hexapeptide (six repeats) JI729_19610 PF14602 Hexapeptide repeat of succinyl-transferase JI729_19615 PF03466 LysR substrate binding domain JI729_19615 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JI729_19630 PF04308 Ribonuclease H-like JI729_19640 PF08796 Protein of unknown function (DUF1797) JI729_19655 PF00563 EAL domain JI729_19655 PF10388 EAL-domain associated signalling protein domain JI729_19665 PF10518 TAT (twin-arginine translocation) pathway signal sequence JI729_19665 PF00149 Calcineurin-like phosphoesterase JI729_19675 PF13090 Polyphosphate kinase C-terminal domain 2 JI729_19675 PF02503 Polyphosphate kinase middle domain JI729_19675 PF17941 Polyphosphate kinase C-terminal domain 1 JI729_19675 PF13089 Polyphosphate kinase N-terminal domain JI729_19680 PF02541 Ppx/GppA phosphatase family JI729_19685 PF14177 YkyB-like protein JI729_19710 PF07690 Major Facilitator Superfamily JI729_19720 PF08267 Cobalamin-independent synthase, N-terminal domain JI729_19720 PF01717 Cobalamin-independent synthase, Catalytic domain JI729_19730 PF14040 Deoxyribonuclease NucA/NucB JI729_19740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_19740 PF00512 His Kinase A (phospho-acceptor) domain JI729_19750 PF00155 Aminotransferase class I and II JI729_19755 PF00356 Bacterial regulatory proteins, lacI family JI729_19755 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JI729_19760 PF00528 Binding-protein-dependent transport system inner membrane component JI729_19765 PF00528 Binding-protein-dependent transport system inner membrane component JI729_19770 PF13416 Bacterial extracellular solute-binding protein JI729_19775 PF02903 Alpha amylase, N-terminal ig-like domain JI729_19775 PF16657 Maltogenic Amylase, C-terminal domain JI729_19775 PF00128 Alpha amylase, catalytic domain JI729_19780 PF00128 Alpha amylase, catalytic domain JI729_19780 PF16657 Maltogenic Amylase, C-terminal domain JI729_19785 PF17912 MalK OB fold domain JI729_19785 PF00005 ABC transporter JI729_19785 PF03459 TOBE domain JI729_19825 PF02803 Thiolase, C-terminal domain JI729_19825 PF00108 Thiolase, N-terminal domain JI729_19830 PF00293 NUDIX domain JI729_19855 PF03551 Transcriptional regulator PadR-like family JI729_19870 PF01008 Initiation factor 2 subunit family JI729_19875 PF01636 Phosphotransferase enzyme family JI729_19880 PF00795 Carbon-nitrogen hydrolase JI729_19885 PF00155 Aminotransferase class I and II JI729_19890 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain JI729_19890 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain JI729_19900 PF00596 Class II Aldolase and Adducin N-terminal domain JI729_19905 PF03079 ARD/ARD' family JI729_19920 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase JI729_19920 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase JI729_19925 PF00144 Beta-lactamase JI729_19930 PF00990 Diguanylate cyclase, GGDEF domain JI729_19930 PF08448 PAS fold JI729_19935 PF00881 Nitroreductase family JI729_19950 PF05524 PEP-utilising enzyme, N-terminal JI729_19950 PF02896 PEP-utilising enzyme, TIM barrel domain JI729_19950 PF00391 PEP-utilising enzyme, mobile domain JI729_19955 PF00381 PTS HPr component phosphorylation site JI729_19960 PF00367 phosphotransferase system, EIIB JI729_19960 PF02378 Phosphotransferase system, EIIC JI729_19960 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JI729_19965 PF00874 PRD domain JI729_19965 PF03123 CAT RNA binding domain JI729_19975 PF00392 Bacterial regulatory proteins, gntR family JI729_19975 PF07702 UTRA domain JI729_19980 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase JI729_19985 PF01979 Amidohydrolase family JI729_19995 PF04079 Segregation and condensation complex subunit ScpB JI729_20000 PF02616 Segregation and condensation protein ScpA JI729_20010 PF03745 Domain of unknown function (DUF309) JI729_20015 PF00583 Acetyltransferase (GNAT) family JI729_20020 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD JI729_20025 PF06207 Protein of unknown function (DUF1002) JI729_20035 PF03323 Bacillus/Clostridium GerA spore germination protein JI729_20040 PF14097 Stage V sporulation protein AE1 JI729_20045 PF03862 SpoVAC/SpoVAEB sporulation membrane protein JI729_20050 PF07451 Stage V sporulation protein AD (SpoVAD) JI729_20055 PF03862 SpoVAC/SpoVAEB sporulation membrane protein JI729_20060 PF13782 Stage V sporulation protein AB JI729_20065 PF12164 Stage V sporulation protein AA JI729_20075 PF00209 Sodium:neurotransmitter symporter family JI729_20080 PF04542 Sigma-70 region 2 JI729_20080 PF04539 Sigma-70 region 3 JI729_20080 PF04545 Sigma-70, region 4 JI729_20085 PF13581 Histidine kinase-like ATPase domain JI729_20090 PF01740 STAS domain JI729_20095 PF07943 Penicillin-binding protein 5, C-terminal domain JI729_20095 PF00768 D-alanyl-D-alanine carboxypeptidase JI729_20100 PF00392 Bacterial regulatory proteins, gntR family JI729_20105 PF00005 ABC transporter JI729_20120 PF01047 MarR family JI729_20130 PF00860 Permease family JI729_20135 PF01544 CorA-like Mg2+ transporter protein JI729_20140 PF02885 Glycosyl transferase family, helical bundle domain JI729_20140 PF00591 Glycosyl transferase family, a/b domain JI729_20140 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain JI729_20145 PF01048 Phosphorylase superfamily JI729_20150 PF01676 Metalloenzyme superfamily JI729_20155 PF13115 YtkA-like JI729_20160 PF02899 Phage integrase, N-terminal SAM-like domain JI729_20160 PF00589 Phage integrase family JI729_20165 PF14004 Protein of unknown function (DUF4227) JI729_20170 PF01475 Ferric uptake regulator family JI729_20175 PF01944 Stage II sporulation protein M JI729_20185 PF00293 NUDIX domain JI729_20190 PF13072 Mother cell inhibitor of FtsZ JI729_20195 PF00248 Aldo/keto reductase family JI729_20200 PF00248 Aldo/keto reductase family JI729_20205 PF04229 GrpB protein JI729_20205 PF13673 Acetyltransferase (GNAT) domain JI729_20215 PF00149 Calcineurin-like phosphoesterase JI729_20215 PF00746 LPXTG cell wall anchor motif JI729_20215 PF02872 5'-nucleotidase, C-terminal domain JI729_20215 PF00565 Staphylococcal nuclease homologue JI729_20225 PF12146 Serine aminopeptidase, S33 JI729_20230 PF13726 Na+-H+ antiporter family JI729_20230 PF03553 Na+/H+ antiporter family JI729_20235 PF00356 Bacterial regulatory proteins, lacI family JI729_20240 PF00583 Acetyltransferase (GNAT) family JI729_20245 PF12146 Serine aminopeptidase, S33 JI729_20250 PF10827 Protein of unknown function (DUF2552) JI729_20260 PF01872 RibD C-terminal domain JI729_20260 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JI729_20265 PF00677 Lumazine binding domain JI729_20270 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase JI729_20270 PF00925 GTP cyclohydrolase II JI729_20275 PF00885 6,7-dimethyl-8-ribityllumazine synthase JI729_20285 PF04055 Radical SAM superfamily JI729_20285 PF06968 Biotin and Thiamin Synthesis associated domain JI729_20290 PF13847 Methyltransferase domain JI729_20295 PF08241 Methyltransferase domain JI729_20295 PF12697 Alpha/beta hydrolase family JI729_20300 PF00155 Aminotransferase class I and II JI729_20310 PF00202 Aminotransferase class-III JI729_20320 PF03553 Na+/H+ antiporter family JI729_20325 PF00149 Calcineurin-like phosphoesterase JI729_20325 PF02872 5'-nucleotidase, C-terminal domain JI729_20335 PF01037 Lrp/AsnC ligand binding domain JI729_20335 PF13404 AsnC-type helix-turn-helix domain JI729_20350 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain JI729_20350 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain JI729_20355 PF00202 Aminotransferase class-III JI729_20360 PF00696 Amino acid kinase family JI729_20365 PF01960 ArgJ family JI729_20370 PF01118 Semialdehyde dehydrogenase, NAD binding domain JI729_20370 PF02774 Semialdehyde dehydrogenase, dimerisation domain JI729_20380 PF00106 short chain dehydrogenase JI729_20385 PF00753 Metallo-beta-lactamase superfamily JI729_20390 PF03807 NADP oxidoreductase coenzyme F420-dependent JI729_20390 PF14748 Pyrroline-5-carboxylate reductase dimerisation JI729_20395 PF03313 Serine dehydratase alpha chain JI729_20400 PF03315 Serine dehydratase beta chain JI729_20400 PF01842 ACT domain JI729_20410 PF12706 Beta-lactamase superfamily domain JI729_20410 PF00753 Metallo-beta-lactamase superfamily JI729_20425 PF00689 Cation transporting ATPase, C-terminus JI729_20425 PF00690 Cation transporter/ATPase, N-terminus JI729_20430 PF02308 MgtC family JI729_20435 PF11798 IMS family HHH motif JI729_20435 PF00817 impB/mucB/samB family JI729_20435 PF11799 impB/mucB/samB family C-terminal domain JI729_20440 PF01546 Peptidase family M20/M25/M40 JI729_20440 PF07687 Peptidase dimerisation domain JI729_20445 PF13302 Acetyltransferase (GNAT) domain JI729_20460 PF03734 L,D-transpeptidase catalytic domain JI729_20465 PF06081 Aromatic acid exporter family member 1 JI729_20465 PF11728 Putative aromatic acid exporter C-terminal domain JI729_20470 PF00005 ABC transporter JI729_20475 PF00528 Binding-protein-dependent transport system inner membrane component JI729_20480 PF00497 Bacterial extracellular solute-binding proteins, family 3 JI729_20485 PF06491 Disulphide isomerase JI729_20495 PF00293 NUDIX domain JI729_20495 PF09297 NADH pyrophosphatase zinc ribbon domain JI729_20500 PF04239 Protein of unknown function (DUF421) JI729_20505 PF01098 Cell cycle protein JI729_20510 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) JI729_20510 PF02817 e3 binding domain JI729_20510 PF00364 Biotin-requiring enzyme JI729_20515 PF02779 Transketolase, pyrimidine binding domain JI729_20515 PF02780 Transketolase, C-terminal domain JI729_20520 PF00676 Dehydrogenase E1 component JI729_20525 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain JI729_20525 PF07992 Pyridine nucleotide-disulphide oxidoreductase JI729_20530 PF00871 Acetokinase family JI729_20535 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase JI729_20535 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain JI729_20540 PF01515 Phosphate acetyl/butaryl transferase JI729_20545 PF00989 PAS fold JI729_20545 PF02954 Bacterial regulatory protein, Fis family JI729_20545 PF00158 Sigma-54 interaction domain JI729_20555 PF03009 Glycerophosphoryl diester phosphodiesterase family JI729_20560 PF14174 YycC-like protein JI729_20570 PF08769 Sporulation initiation factor Spo0A C terminal JI729_20570 PF00072 Response regulator receiver domain JI729_20575 PF05580 SpoIVB peptidase S55 JI729_20575 PF17820 PDZ domain JI729_20580 PF13476 AAA domain JI729_20585 PF01316 Arginine repressor, DNA binding domain JI729_20585 PF02863 Arginine repressor, C-terminal domain JI729_20590 PF01479 S4 domain JI729_20590 PF01728 FtsJ-like methyltransferase JI729_20595 PF13292 1-deoxy-D-xylulose-5-phosphate synthase JI729_20595 PF02779 Transketolase, pyrimidine binding domain JI729_20595 PF02780 Transketolase, C-terminal domain JI729_20600 PF00348 Polyprenyl synthetase JI729_20605 PF02609 Exonuclease VII small subunit JI729_20610 PF13742 OB-fold nucleic acid binding domain JI729_20610 PF02601 Exonuclease VII, large subunit JI729_20615 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain JI729_20615 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain JI729_20620 PF01029 NusB family JI729_20625 PF03780 Asp23 family, cell envelope-related function JI729_20630 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain JI729_20630 PF02785 Biotin carboxylase C-terminal domain JI729_20630 PF00289 Biotin carboxylase, N-terminal domain JI729_20635 PF00364 Biotin-requiring enzyme JI729_20645 PF12685 SpoIIIAH-like protein JI729_20655 PF09581 Stage III sporulation protein AF (Spore_III_AF) JI729_20660 PF09546 Stage III sporulation protein AE (spore_III_AE) JI729_20665 PF06686 Stage III sporulation protein AC/AD protein family JI729_20670 PF06686 Stage III sporulation protein AC/AD protein family JI729_20675 PF09548 Stage III sporulation protein AB (spore_III_AB) JI729_20700 PF08207 Elongation factor P (EF-P) KOW-like domain JI729_20700 PF01132 Elongation factor P (EF-P) OB domain JI729_20700 PF09285 Elongation factor P, C-terminal JI729_20705 PF01321 Creatinase/Prolidase N-terminal domain JI729_20705 PF00557 Metallopeptidase family M24 JI729_20710 PF01220 Dehydroquinase class II JI729_20715 PF11085 Conserved membrane protein YqhR JI729_20720 PF07136 Protein of unknown function (DUF1385) JI729_20730 PF13419 Haloacid dehalogenase-like hydrolase JI729_20735 PF01325 Iron dependent repressor, N-terminal DNA binding domain JI729_20735 PF02742 Iron dependent repressor, metal binding and dimerisation domain JI729_20760 PF03099 Biotin/lipoate A/B protein ligase family JI729_20765 PF00581 Rhodanese-like domain JI729_20775 PF00356 Bacterial regulatory proteins, lacI family JI729_20775 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JI729_20785 PF00893 Small Multidrug Resistance protein JI729_20790 PF00893 Small Multidrug Resistance protein JI729_20820 PF00005 ABC transporter JI729_20825 PF00392 Bacterial regulatory proteins, gntR family JI729_20840 PF02347 Glycine cleavage system P-protein JI729_20845 PF02347 Glycine cleavage system P-protein JI729_20850 PF01571 Aminomethyltransferase folate-binding domain JI729_20850 PF08669 Glycine cleavage T-protein C-terminal barrel domain JI729_20855 PF00176 SNF2 family N-terminal domain JI729_20855 PF00271 Helicase conserved C-terminal domain JI729_20860 PF11079 Bacterial protein YqhG of unknown function JI729_20880 PF14038 YqzE-like protein JI729_20885 PF01202 Shikimate kinase JI729_20920 PF00482 Type II secretion system (T2SS), protein F JI729_20925 PF00437 Type II/IV secretion system protein JI729_20935 PF11117 Protein of unknown function (DUF2626) JI729_20940 PF00375 Sodium:dicarboxylate symporter family JI729_20975 PF04101 Glycosyltransferase family 28 C-terminal domain JI729_20975 PF03033 Glycosyltransferase family 28 N-terminal domain JI729_20980 PF02965 Vitamin B12 dependent methionine synthase, activation domain JI729_20980 PF02574 Homocysteine S-methyltransferase JI729_20980 PF00809 Pterin binding enzyme JI729_20980 PF02607 B12 binding domain JI729_20980 PF02310 B12 binding domain JI729_20985 PF02574 Homocysteine S-methyltransferase JI729_20985 PF02219 Methylenetetrahydrofolate reductase JI729_20990 PF01053 Cys/Met metabolism PLP-dependent enzyme JI729_20995 PF01053 Cys/Met metabolism PLP-dependent enzyme JI729_21005 PF01022 Bacterial regulatory protein, arsR family JI729_21015 PF00753 Metallo-beta-lactamase superfamily JI729_21020 PF10958 Protein of unknown function (DUF2759) JI729_21025 PF00480 ROK family JI729_21030 PF06014 Bacterial protein of unknown function (DUF910) JI729_21035 PF01812 5-formyltetrahydrofolate cyclo-ligase family JI729_21040 PF00471 Ribosomal protein L33 JI729_21045 PF00483 Nucleotidyl transferase JI729_21050 PF01895 PhoU domain JI729_21055 PF00005 ABC transporter JI729_21060 PF00528 Binding-protein-dependent transport system inner membrane component JI729_21065 PF00528 Binding-protein-dependent transport system inner membrane component JI729_21070 PF12849 PBP superfamily domain JI729_21075 PF00905 Penicillin binding protein transpeptidase domain JI729_21075 PF03717 Penicillin-binding Protein dimerisation domain JI729_21080 PF07690 Major Facilitator Superfamily JI729_21085 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JI729_21085 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JI729_21095 PF06691 Protein of unknown function (DUF1189) JI729_21105 PF04551 GcpE protein JI729_21110 PF01475 Ferric uptake regulator family JI729_21115 PF00950 ABC 3 transport family JI729_21120 PF00005 ABC transporter JI729_21125 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JI729_21125 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JI729_21130 PF11116 Protein of unknown function (DUF2624) JI729_21135 PF01261 Xylose isomerase-like TIM barrel JI729_21140 PF00270 DEAD/DEAH box helicase JI729_21140 PF00271 Helicase conserved C-terminal domain JI729_21150 PF02401 LytB protein JI729_21155 PF01784 NIF3 (NGG1p interacting factor 3) JI729_21160 PF04816 tRNA (adenine(22)-N(1))-methyltransferase JI729_21165 PF13442 Cytochrome C oxidase, cbb3-type, subunit III JI729_21170 PF04545 Sigma-70, region 4 JI729_21170 PF03979 Sigma-70 factor, region 1.1 JI729_21170 PF04539 Sigma-70 region 3 JI729_21170 PF00140 Sigma-70 factor, region 1.2 JI729_21170 PF04542 Sigma-70 region 2 JI729_21175 PF08275 DNA primase catalytic core, N-terminal domain JI729_21175 PF10410 DnaB-helicase binding domain of primase JI729_21175 PF01807 CHC2 zinc finger JI729_21180 PF03618 Kinase/pyrophosphorylase JI729_21185 PF00571 CBS domain JI729_21185 PF08279 HTH domain JI729_21190 PF11967 Recombination protein O N terminal JI729_21190 PF02565 Recombination protein O C terminal JI729_21200 PF07650 KH domain JI729_21200 PF01926 50S ribosome-binding GTPase JI729_21205 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JI729_21210 PF01219 Prokaryotic diacylglycerol kinase JI729_21215 PF02130 Uncharacterized protein family UPF0054 JI729_21220 PF07697 7TM-HD extracellular JI729_21220 PF07698 7TM receptor with intracellular HD hydrolase JI729_21220 PF01966 HD domain JI729_21225 PF02562 PhoH-like protein JI729_21230 PF06898 Putative stage IV sporulation protein YqfD JI729_21235 PF07873 YabP family JI729_21240 PF09424 Yqey-like protein JI729_21245 PF01165 Ribosomal protein S21 JI729_21250 PF01938 TRAM domain JI729_21250 PF00919 Uncharacterized protein family UPF0004 JI729_21250 PF04055 Radical SAM superfamily JI729_21255 PF04452 RNA methyltransferase JI729_21265 PF00226 DnaJ domain JI729_21265 PF00684 DnaJ central domain JI729_21265 PF01556 DnaJ C terminal domain JI729_21270 PF00012 Hsp70 protein JI729_21275 PF01025 GrpE JI729_21280 PF01628 HrcA protein C terminal domain JI729_21285 PF04055 Radical SAM superfamily JI729_21285 PF06969 HemN C-terminal domain JI729_21290 PF01638 HxlR-like helix-turn-helix JI729_21295 PF00009 Elongation factor Tu GTP binding domain JI729_21295 PF06421 GTP-binding protein LepA C-terminus JI729_21295 PF03144 Elongation factor Tu domain 2 JI729_21295 PF00679 Elongation factor G C-terminus JI729_21305 PF03418 Germination protease JI729_21310 PF01649 Ribosomal protein S20 JI729_21315 PF06144 DNA polymerase III, delta subunit JI729_21320 PF14141 YqzM-like protein JI729_21325 PF03772 Competence protein JI729_21325 PF00753 Metallo-beta-lactamase superfamily JI729_21325 PF13567 Domain of unknown function (DUF4131) JI729_21330 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region JI729_21335 PF10531 SLBB domain JI729_21340 PF03807 NADP oxidoreductase coenzyme F420-dependent JI729_21340 PF14748 Pyrroline-5-carboxylate reductase dimerisation JI729_21345 PF13649 Methyltransferase domain JI729_21355 PF01966 HD domain JI729_21360 PF01467 Cytidylyltransferase-like JI729_21365 PF01985 CRS1 / YhbY (CRM) domain JI729_21370 PF01488 Shikimate / quinate 5-dehydrogenase JI729_21370 PF18317 Shikimate 5'-dehydrogenase C-terminal domain JI729_21370 PF08501 Shikimate dehydrogenase substrate binding domain JI729_21375 PF01926 50S ribosome-binding GTPase JI729_21390 PF02666 Phosphatidylserine decarboxylase JI729_21395 PF04542 Sigma-70 region 2 JI729_21395 PF04545 Sigma-70, region 4 JI729_21405 PF16244 Domain of unknown function (DUF4901) JI729_21410 PF00471 Ribosomal protein L33 JI729_21415 PF00881 Nitroreductase family JI729_21420 PF04607 Region found in RelA / SpoT proteins JI729_21430 PF00245 Alkaline phosphatase JI729_21435 PF00583 Acetyltransferase (GNAT) family JI729_21440 PF00561 alpha/beta hydrolase fold JI729_21440 PF08386 TAP-like protein JI729_21475 PF02225 PA domain JI729_21475 PF00082 Subtilase family JI729_21475 PF05922 Peptidase inhibitor I9 JI729_21475 PF13860 FlgD Ig-like domain JI729_21480 PF00351 Biopterin-dependent aromatic amino acid hydroxylase JI729_21490 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily JI729_21495 PF07681 DoxX JI729_21525 PF00005 ABC transporter JI729_21530 PF01032 FecCD transport family JI729_21535 PF01497 Periplasmic binding protein JI729_21540 PF14143 YrhC-like protein JI729_21545 PF00171 Aldehyde dehydrogenase family JI729_21545 PF00465 Iron-containing alcohol dehydrogenase JI729_21550 PF01053 Cys/Met metabolism PLP-dependent enzyme JI729_21555 PF00291 Pyridoxal-phosphate dependent enzyme JI729_21560 PF01048 Phosphorylase superfamily JI729_21565 PF08241 Methyltransferase domain JI729_21580 PF03717 Penicillin-binding Protein dimerisation domain JI729_21580 PF00905 Penicillin binding protein transpeptidase domain JI729_21590 PF01272 Transcription elongation factor, GreA/GreB, C-term JI729_21590 PF03449 Transcription elongation factor, N-terminal JI729_21595 PF00485 Phosphoribulokinase / Uridine kinase family JI729_21600 PF16325 Peptidase family U32 C-terminal domain JI729_21600 PF01136 Peptidase family U32 JI729_21605 PF01136 Peptidase family U32 JI729_21610 PF01596 O-methyltransferase JI729_21615 PF02618 YceG-like family JI729_21620 PF06949 Protein of unknown function (DUF1292) JI729_21625 PF03652 Holliday junction resolvase JI729_21630 PF06135 IreB regulatory phosphoprotein JI729_21635 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JI729_21635 PF01411 tRNA synthetases class II (A) JI729_21635 PF02272 DHHA1 domain JI729_21645 PF01594 AI-2E family transporter JI729_21665 PF13538 UvrD-like helicase C-terminal domain JI729_21665 PF14490 Helix-hairpin-helix containing domain JI729_21665 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain JI729_21680 PF00266 Aminotransferase class-V JI729_21685 PF02082 Transcriptional regulator JI729_21690 PF16193 AAA C-terminal domain JI729_21690 PF05496 Holliday junction DNA helicase RuvB P-loop domain JI729_21690 PF12002 MgsA AAA+ ATPase C terminal JI729_21700 PF00899 ThiF family JI729_21705 PF00152 tRNA synthetases class II (D, K and N) JI729_21705 PF02938 GAD domain JI729_21705 PF01336 OB-fold nucleic acid binding domain JI729_21710 PF13393 Histidyl-tRNA synthetase JI729_21710 PF03129 Anticodon binding domain JI729_21720 PF02580 D-Tyr-tRNA(Tyr) deacylase JI729_21725 PF02824 TGS domain JI729_21725 PF13291 ACT domain JI729_21725 PF04607 Region found in RelA / SpoT proteins JI729_21730 PF00156 Phosphoribosyl transferase domain JI729_21735 PF10141 Single-strand DNA-specific exonuclease, C terminal domain JI729_21735 PF02272 DHHA1 domain JI729_21735 PF17768 RecJ OB domain JI729_21735 PF01368 DHH family JI729_21740 PF16916 Dimerisation domain of Zinc Transporter JI729_21740 PF01545 Cation efflux family JI729_21745 PF02355 Protein export membrane protein JI729_21745 PF07549 SecD/SecF GG Motif JI729_21750 PF13797 Post-transcriptional regulator JI729_21755 PF01943 Polysaccharide biosynthesis protein JI729_21755 PF14667 Polysaccharide biosynthesis C-terminal domain JI729_21760 PF04239 Protein of unknown function (DUF421) JI729_21770 PF02699 Preprotein translocase subunit JI729_21775 PF01702 Queuine tRNA-ribosyltransferase JI729_21780 PF02547 Queuosine biosynthesis protein JI729_21785 PF11146 Protein of unknown function (DUF2905) JI729_21790 PF05496 Holliday junction DNA helicase RuvB P-loop domain JI729_21790 PF17864 RuvB AAA lid domain JI729_21790 PF05491 RuvB C-terminal winged helix domain JI729_21795 PF01330 RuvA N terminal domain JI729_21795 PF07499 RuvA, C-terminal domain JI729_21800 PF01497 Periplasmic binding protein JI729_21820 PF01476 LysM domain JI729_21825 PF02445 Quinolinate synthetase A protein JI729_21830 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain JI729_21830 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain JI729_21835 PF02910 Fumarate reductase flavoprotein C-term JI729_21835 PF00890 FAD binding domain JI729_21840 PF00266 Aminotransferase class-V JI729_21845 PF08279 HTH domain JI729_21845 PF02829 3H domain JI729_21850 PF03475 3-alpha domain JI729_21850 PF03473 MOSC domain JI729_21860 PF00800 Prephenate dehydratase JI729_21860 PF01842 ACT domain JI729_21865 PF02687 FtsX-like permease family JI729_21870 PF02687 FtsX-like permease family JI729_21875 PF00005 ABC transporter JI729_21880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_21885 PF00486 Transcriptional regulatory protein, C terminal JI729_21885 PF00072 Response regulator receiver domain JI729_21890 PF01926 50S ribosome-binding GTPase JI729_21890 PF01018 GTP1/OBG JI729_21890 PF09269 Domain of unknown function (DUF1967) JI729_21895 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain JI729_21895 PF14682 Sporulation initiation phospho-transferase B, C-terminal JI729_21900 PF01016 Ribosomal L27 protein JI729_21905 PF04327 Cysteine protease Prp JI729_21910 PF00829 Ribosomal prokaryotic L21 protein JI729_21915 PF10150 Ribonuclease E/G family JI729_21915 PF00575 S1 RNA binding domain JI729_21920 PF02163 Peptidase family M50 JI729_21925 PF01551 Peptidase family M23 JI729_21930 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain JI729_21935 PF03775 Septum formation inhibitor MinC, C-terminal domain JI729_21945 PF04085 rod shape-determining protein MreC JI729_21955 PF04002 RadC-like JAB domain JI729_21960 PF02545 Maf-like protein JI729_21970 PF08245 Mur ligase middle domain JI729_21970 PF02875 Mur ligase family, glutamate ligase domain JI729_21975 PF10458 Valyl tRNA synthetase tRNA binding arm JI729_21975 PF08264 Anticodon-binding domain of tRNA JI729_21975 PF00133 tRNA synthetases class I (I, L, M and V) JI729_21985 PF01476 LysM domain JI729_21990 PF00202 Aminotransferase class-III JI729_21995 PF00490 Delta-aminolevulinic acid dehydratase JI729_22000 PF02602 Uroporphyrinogen-III synthase HemD JI729_22005 PF03900 Porphobilinogen deaminase, C-terminal domain JI729_22005 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain JI729_22010 PF01578 Cytochrome C assembly protein JI729_22015 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain JI729_22015 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain JI729_22015 PF01488 Shikimate / quinate 5-dehydrogenase JI729_22020 PF01047 MarR family JI729_22025 PF02566 OsmC-like protein JI729_22030 PF01926 50S ribosome-binding GTPase JI729_22035 PF02190 ATP-dependent protease La (LON) substrate-binding domain JI729_22035 PF05362 Lon protease (S16) C-terminal proteolytic domain JI729_22035 PF00004 ATPase family associated with various cellular activities (AAA) JI729_22040 PF00004 ATPase family associated with various cellular activities (AAA) JI729_22040 PF05362 Lon protease (S16) C-terminal proteolytic domain JI729_22045 PF07724 AAA domain (Cdc48 subfamily) JI729_22045 PF10431 C-terminal, D2-small domain, of ClpB protein JI729_22045 PF06689 ClpX C4-type zinc finger JI729_22050 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase JI729_22050 PF05698 Bacterial trigger factor protein (TF) C-terminus JI729_22050 PF05697 Bacterial trigger factor protein (TF) JI729_22070 PF08000 Bacterial PH domain JI729_22070 PF11724 YvbH-like oligomerisation region JI729_22110 PF12850 Calcineurin-like phosphoesterase superfamily domain JI729_22115 PF01725 Ham1 family JI729_22120 PF01138 3' exoribonuclease family, domain 1 JI729_22120 PF03725 3' exoribonuclease family, domain 2 JI729_22125 PF10646 Sporulation and spore germination JI729_22130 PF01177 Asp/Glu/Hydantoin racemase JI729_22140 PF00196 Bacterial regulatory proteins, luxR family JI729_22145 PF00860 Permease family JI729_22150 PF07969 Amidohydrolase family JI729_22155 PF04024 PspC domain JI729_22160 PF07883 Cupin domain JI729_22160 PF01381 Helix-turn-helix JI729_22165 PF13536 Putative multidrug resistance efflux transporter JI729_22170 PF00230 Major intrinsic protein JI729_22175 PF02082 Transcriptional regulator JI729_22185 PF00005 ABC transporter JI729_22185 PF13732 Domain of unknown function (DUF4162) JI729_22190 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) JI729_22195 PF13677 Membrane MotB of proton-channel complex MotA/MotB JI729_22195 PF00691 OmpA family JI729_22200 PF01618 MotA/TolQ/ExbB proton channel family JI729_22205 PF02557 D-alanyl-D-alanine carboxypeptidase JI729_22210 PF03061 Thioesterase superfamily JI729_22215 PF13085 2Fe-2S iron-sulfur cluster binding domain JI729_22215 PF13183 4Fe-4S dicluster domain JI729_22220 PF00890 FAD binding domain JI729_22220 PF02910 Fumarate reductase flavoprotein C-term JI729_22225 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit JI729_22230 PF10702 Protein of unknown function (DUF2507) JI729_22235 PF02151 UvrB/uvrC motif JI729_22235 PF01541 GIY-YIG catalytic domain JI729_22235 PF08459 UvrC Helix-hairpin-helix N-terminal JI729_22240 PF00085 Thioredoxin JI729_22245 PF00766 Electron transfer flavoprotein FAD-binding domain JI729_22245 PF01012 Electron transfer flavoprotein domain JI729_22250 PF01012 Electron transfer flavoprotein domain JI729_22255 PF00378 Enoyl-CoA hydratase/isomerase JI729_22260 PF08359 YsiA-like protein, C-terminal region JI729_22260 PF00440 Bacterial regulatory proteins, tetR family JI729_22265 PF00501 AMP-binding enzyme JI729_22265 PF13193 AMP-binding enzyme C-terminal domain JI729_22275 PF01497 Periplasmic binding protein JI729_22280 PF01032 FecCD transport family JI729_22295 PF05163 DinB family JI729_22325 PF00005 ABC transporter JI729_22330 PF00512 His Kinase A (phospho-acceptor) domain JI729_22330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_22335 PF00072 Response regulator receiver domain JI729_22335 PF00486 Transcriptional regulatory protein, C terminal JI729_22345 PF09962 Uncharacterized conserved protein (DUF2196) JI729_22350 PF10672 S-adenosylmethionine-dependent methyltransferase JI729_22350 PF17785 PUA-like domain JI729_22355 PF03992 Antibiotic biosynthesis monooxygenase JI729_22360 PF04203 Sortase domain JI729_22365 PF00005 ABC transporter JI729_22370 PF01032 FecCD transport family JI729_22375 PF01497 Periplasmic binding protein JI729_22380 PF05031 Iron Transport-associated domain JI729_22390 PF05031 Iron Transport-associated domain JI729_22395 PF05525 Branched-chain amino acid transport protein JI729_22400 PF00849 RNA pseudouridylate synthase JI729_22400 PF01479 S4 domain JI729_22405 PF01713 Smr domain JI729_22405 PF00488 MutS domain V JI729_22410 PF14791 DNA polymerase beta thumb JI729_22410 PF14716 Helix-hairpin-helix domain JI729_22410 PF02811 PHP domain JI729_22415 PF02674 Colicin V production protein JI729_22420 PF05164 Cell division protein ZapA JI729_22425 PF11858 Domain of unknown function (DUF3378) JI729_22425 PF01351 Ribonuclease HII JI729_22445 PF00152 tRNA synthetases class II (D, K and N) JI729_22445 PF01336 OB-fold nucleic acid binding domain JI729_22450 PF03484 tRNA synthetase B5 domain JI729_22450 PF03483 B3/4 domain JI729_22450 PF03147 Ferredoxin-fold anticodon binding domain JI729_22450 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain JI729_22450 PF01588 Putative tRNA binding domain JI729_22455 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain JI729_22455 PF01409 tRNA synthetases class II core domain (F) JI729_22460 PF08032 RNA 2'-O ribose methyltransferase substrate binding JI729_22460 PF00588 SpoU rRNA Methylase family JI729_22465 PF14098 Small, acid-soluble spore protein I JI729_22470 PF01966 HD domain JI729_22490 PF07690 Major Facilitator Superfamily JI729_22500 PF16859 Tetracyclin repressor-like, C-terminal domain JI729_22500 PF00440 Bacterial regulatory proteins, tetR family JI729_22505 PF05343 M42 glutamyl aminopeptidase JI729_22515 PF00453 Ribosomal protein L20 JI729_22520 PF01632 Ribosomal protein L35 JI729_22525 PF05198 Translation initiation factor IF-3, N-terminal domain JI729_22525 PF00707 Translation initiation factor IF-3, C-terminal domain JI729_22530 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JI729_22530 PF03129 Anticodon binding domain JI729_22530 PF02824 TGS domain JI729_22530 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain JI729_22535 PF08812 YtxC-like family JI729_22540 PF13783 Domain of unknown function (DUF4177) JI729_22545 PF07319 Primosomal protein DnaI N-terminus JI729_22545 PF01695 IstB-like ATP binding protein JI729_22550 PF07261 Replication initiation and membrane attachment JI729_22555 PF03477 ATP cone domain JI729_22560 PF02675 S-adenosylmethionine decarboxylase JI729_22565 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JI729_22565 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JI729_22570 PF01121 Dephospho-CoA kinase JI729_22575 PF02659 Putative manganese efflux pump JI729_22580 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain JI729_22580 PF06827 Zinc finger found in FPG and IleRS JI729_22580 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain JI729_22585 PF00476 DNA polymerase family A JI729_22585 PF01367 5'-3' exonuclease, C-terminal SAM fold JI729_22585 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain JI729_22590 PF16736 Single Cache-like JI729_22590 PF00989 PAS fold JI729_22590 PF00512 His Kinase A (phospho-acceptor) domain JI729_22590 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_22595 PF00072 Response regulator receiver domain JI729_22595 PF00486 Transcriptional regulatory protein, C terminal JI729_22610 PF00056 lactate/malate dehydrogenase, NAD binding domain JI729_22610 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JI729_22615 PF00180 Isocitrate/isopropylmalate dehydrogenase JI729_22620 PF00285 Citrate synthase, C-terminal domain JI729_22625 PF04284 Protein of unknown function (DUF441) JI729_22630 PF01594 AI-2E family transporter JI729_22635 PF04186 FxsA cytoplasmic membrane protein JI729_22640 PF02887 Pyruvate kinase, alpha/beta domain JI729_22640 PF00391 PEP-utilising enzyme, mobile domain JI729_22640 PF00224 Pyruvate kinase, barrel domain JI729_22645 PF00365 Phosphofructokinase JI729_22650 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit JI729_22655 PF01039 Carboxyl transferase domain JI729_22655 PF17848 Acetyl-coA carboxylase zinc finger domain JI729_22660 PF00392 Bacterial regulatory proteins, gntR family JI729_22665 PF03949 Malic enzyme, NAD binding domain JI729_22665 PF00390 Malic enzyme, N-terminal domain JI729_22670 PF17657 Bacterial DNA polymerase III alpha subunit finger domain JI729_22670 PF01336 OB-fold nucleic acid binding domain JI729_22670 PF07733 Bacterial DNA polymerase III alpha NTPase domain JI729_22670 PF14579 Helix-hairpin-helix motif JI729_22670 PF02811 PHP domain JI729_22675 PF14034 Sporulation protein YtrH JI729_22685 PF02272 DHHA1 domain JI729_22685 PF01368 DHH family JI729_22690 PF14007 YtpI-like protein JI729_22700 PF07085 DRTGG domain JI729_22700 PF00571 CBS domain JI729_22700 PF03061 Thioesterase superfamily JI729_22700 PF00392 Bacterial regulatory proteins, gntR family JI729_22715 PF01321 Creatinase/Prolidase N-terminal domain JI729_22715 PF00557 Metallopeptidase family M24 JI729_22750 PF12746 GNAT acetyltransferase JI729_22755 PF07883 Cupin domain JI729_22765 PF05222 Alanine dehydrogenase/PNT, N-terminal domain JI729_22765 PF01262 Alanine dehydrogenase/PNT, C-terminal domain JI729_22775 PF00582 Universal stress protein family JI729_22795 PF14698 Argininosuccinate lyase C-terminal JI729_22795 PF00206 Lyase JI729_22800 PF00764 Arginosuccinate synthase JI729_22815 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JI729_22815 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JI729_22820 PF12787 EcsC protein family JI729_22835 PF00871 Acetokinase family JI729_22840 PF02384 N-6 DNA Methylase JI729_22845 PF08534 Redoxin JI729_22850 PF09579 Sporulation protein YtfJ (Spore_YtfJ) JI729_22860 PF01513 ATP-NAD kinase JI729_22865 PF07969 Amidohydrolase family JI729_22875 PF00501 AMP-binding enzyme JI729_22875 PF13193 AMP-binding enzyme C-terminal domain JI729_22880 PF00269 Small, acid-soluble spore proteins, alpha/beta type JI729_22885 PF02568 Thiamine biosynthesis protein (ThiI) JI729_22885 PF02926 THUMP domain JI729_22890 PF00266 Aminotransferase class-V JI729_22895 PF06160 Septation ring formation regulator, EzrA JI729_22900 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JI729_22900 PF03466 LysR substrate binding domain JI729_22905 PF00892 EamA-like transporter family JI729_22910 PF00440 Bacterial regulatory proteins, tetR family JI729_22915 PF13185 GAF domain JI729_22920 PF01053 Cys/Met metabolism PLP-dependent enzyme JI729_22925 PF01479 S4 domain JI729_22925 PF00163 Ribosomal protein S4/S9 N-terminal domain JI729_22930 PF14436 Bacterial EndoU nuclease JI729_22930 PF04740 LXG domain of WXG superfamily JI729_22970 PF00579 tRNA synthetases class I (W and Y) JI729_22970 PF01479 S4 domain JI729_22980 PF08281 Sigma-70, region 4 JI729_22980 PF04542 Sigma-70 region 2 JI729_22990 PF12464 Maltose acetyltransferase JI729_22990 PF14602 Hexapeptide repeat of succinyl-transferase JI729_22995 PF00501 AMP-binding enzyme JI729_22995 PF13193 AMP-binding enzyme C-terminal domain JI729_23000 PF00583 Acetyltransferase (GNAT) family JI729_23005 PF00571 CBS domain JI729_23010 PF00850 Histone deacetylase domain JI729_23025 PF00486 Transcriptional regulatory protein, C terminal JI729_23025 PF00072 Response regulator receiver domain JI729_23030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_23030 PF00512 His Kinase A (phospho-acceptor) domain JI729_23030 PF00989 PAS fold JI729_23030 PF16736 Single Cache-like JI729_23035 PF12796 Ankyrin repeats (3 copies) JI729_23040 PF01408 Oxidoreductase family, NAD-binding Rossmann fold JI729_23045 PF01741 Large-conductance mechanosensitive channel, MscL JI729_23070 PF00356 Bacterial regulatory proteins, lacI family JI729_23075 PF00793 DAHP synthetase I family JI729_23075 PF01817 Chorismate mutase type II JI729_23080 PF07537 CamS sex pheromone cAM373 precursor JI729_23085 PF11009 Protein of unknown function (DUF2847) JI729_23095 PF02073 Thermophilic metalloprotease (M29) JI729_23110 PF13302 Acetyltransferase (GNAT) domain JI729_23115 PF02875 Mur ligase family, glutamate ligase domain JI729_23115 PF01225 Mur ligase family, catalytic domain JI729_23115 PF08245 Mur ligase middle domain JI729_23125 PF01580 FtsK/SpoIIIE family JI729_23125 PF17854 FtsK alpha domain JI729_23125 PF09397 Ftsk gamma domain JI729_23130 PF01476 LysM domain JI729_23130 PF01520 N-acetylmuramoyl-L-alanine amidase JI729_23140 PF01588 Putative tRNA binding domain JI729_23140 PF14794 Domain of unknown function (DUF4479) JI729_23145 PF07285 Protein of unknown function (DUF1444) JI729_23150 PF00085 Thioredoxin JI729_23155 PF01931 Protein of unknown function DUF84 JI729_23160 PF05343 M42 glutamyl aminopeptidase JI729_23170 PF00753 Metallo-beta-lactamase superfamily JI729_23175 PF02390 Putative methyltransferase JI729_23180 PF14165 YtzH-like protein JI729_23185 PF01636 Phosphotransferase enzyme family JI729_23190 PF17999 Pullulanase N1-terminal domain JI729_23190 PF00128 Alpha amylase, catalytic domain JI729_23190 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JI729_23195 PF02834 LigT like Phosphoesterase JI729_23200 PF01546 Peptidase family M20/M25/M40 JI729_23205 PF08220 DeoR-like helix-turn-helix domain JI729_23210 PF00849 RNA pseudouridylate synthase JI729_23210 PF01479 S4 domain JI729_23215 PF01943 Polysaccharide biosynthesis protein JI729_23215 PF14667 Polysaccharide biosynthesis C-terminal domain JI729_23225 PF07690 Major Facilitator Superfamily JI729_23230 PF01022 Bacterial regulatory protein, arsR family JI729_23235 PF08327 Activator of Hsp90 ATPase homolog 1-like protein JI729_23245 PF10957 Sporulation protein Cse60 JI729_23255 PF02559 CarD-like/TRCF domain JI729_23265 PF06800 Sugar transport protein JI729_23280 PF02391 MoaE protein JI729_23285 PF03205 Molybdopterin guanine dinucleotide synthesis protein B JI729_23290 PF03453 MoeA N-terminal region (domain I and II) JI729_23290 PF03454 MoeA C-terminal region (domain IV) JI729_23290 PF00994 Probable molybdopterin binding domain JI729_23295 PF01967 MoaC family JI729_23300 PF00899 ThiF family JI729_23305 PF06463 Molybdenum Cofactor Synthesis C JI729_23305 PF04055 Radical SAM superfamily JI729_23325 PF00581 Rhodanese-like domain JI729_23335 PF00561 alpha/beta hydrolase fold JI729_23340 PF03323 Bacillus/Clostridium GerA spore germination protein JI729_23345 PF03845 Spore germination protein JI729_23375 PF00133 tRNA synthetases class I (I, L, M and V) JI729_23375 PF08264 Anticodon-binding domain of tRNA JI729_23375 PF09334 tRNA synthetases class I (M) JI729_23375 PF13603 Leucyl-tRNA synthetase, Domain 2 JI729_23380 PF07690 Major Facilitator Superfamily JI729_23385 PF00999 Sodium/hydrogen exchanger family JI729_23390 PF02080 TrkA-C domain JI729_23395 PF00589 Phage integrase family JI729_23405 PF00005 ABC transporter JI729_23410 PF04235 Protein of unknown function (DUF418) JI729_23410 PF07786 Protein of unknown function (DUF1624) JI729_23420 PF10732 Protein of unknown function (DUF2524) JI729_23425 PF04055 Radical SAM superfamily JI729_23425 PF16199 Radical_SAM C-terminal domain JI729_23430 PF06962 Putative rRNA methylase JI729_23435 PF01177 Asp/Glu/Hydantoin racemase JI729_23445 PF10776 Protein of unknown function (DUF2600) JI729_23450 PF12146 Serine aminopeptidase, S33 JI729_23455 PF00132 Bacterial transferase hexapeptide (six repeats) JI729_23460 PF01569 PAP2 superfamily JI729_23465 PF13439 Glycosyltransferase Family 4 JI729_23465 PF00534 Glycosyl transferases group 1 JI729_23470 PF12804 MobA-like NTP transferase domain JI729_23475 PF00994 Probable molybdopterin binding domain JI729_23490 PF13302 Acetyltransferase (GNAT) domain JI729_23495 PF00438 S-adenosylmethionine synthetase, N-terminal domain JI729_23495 PF02773 S-adenosylmethionine synthetase, C-terminal domain JI729_23495 PF02772 S-adenosylmethionine synthetase, central domain JI729_23500 PF01293 Phosphoenolpyruvate carboxykinase JI729_23535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_23535 PF00512 His Kinase A (phospho-acceptor) domain JI729_23535 PF00989 PAS fold JI729_23535 PF13188 PAS domain JI729_23535 PF13426 PAS domain JI729_23540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_23540 PF02743 Cache domain JI729_23540 PF00512 His Kinase A (phospho-acceptor) domain JI729_23550 PF08386 TAP-like protein JI729_23550 PF00561 alpha/beta hydrolase fold JI729_23555 PF00884 Sulfatase JI729_23580 PF00005 ABC transporter JI729_23585 PF00528 Binding-protein-dependent transport system inner membrane component JI729_23600 PF13419 Haloacid dehalogenase-like hydrolase JI729_23610 PF00293 NUDIX domain JI729_23640 PF02664 S-Ribosylhomocysteinase (LuxS) JI729_23645 PF01809 Putative membrane protein insertion efficiency factor JI729_23650 PF00484 Carbonic anhydrase JI729_23655 PF01654 Cytochrome bd terminal oxidase subunit I JI729_23660 PF02322 Cytochrome bd terminal oxidase subunit II JI729_23665 PF10676 Spore germination protein gerPA/gerPF JI729_23675 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JI729_23675 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JI729_23695 PF04012 PspA/IM30 family JI729_23710 PF07670 Nucleoside recognition JI729_23710 PF02421 Ferrous iron transport protein B JI729_23710 PF17910 FeoB cytosolic helical domain JI729_23710 PF07664 Ferrous iron transport protein B C terminus JI729_23720 PF09515 Thiamine transporter protein (Thia_YuaJ) JI729_23725 PF00512 His Kinase A (phospho-acceptor) domain JI729_23725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_23725 PF00672 HAMP domain JI729_23730 PF00486 Transcriptional regulatory protein, C terminal JI729_23730 PF00072 Response regulator receiver domain JI729_23755 PF00156 Phosphoribosyl transferase domain JI729_23760 PF00781 Diacylglycerol kinase catalytic domain JI729_23795 PF09335 SNARE associated Golgi protein JI729_23800 PF00398 Ribosomal RNA adenine dimethylase JI729_23805 PF02687 FtsX-like permease family JI729_23810 PF00005 ABC transporter JI729_23815 PF12833 Helix-turn-helix domain JI729_23815 PF06445 GyrI-like small molecule binding domain JI729_23825 PF00005 ABC transporter JI729_23830 PF07853 Protein of unknown function (DUF1648) JI729_23830 PF13630 SdpI/YhfL protein family JI729_23835 PF01022 Bacterial regulatory protein, arsR family JI729_23840 PF00486 Transcriptional regulatory protein, C terminal JI729_23840 PF00072 Response regulator receiver domain JI729_23845 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_23850 PF02687 FtsX-like permease family JI729_23855 PF02687 FtsX-like permease family JI729_23860 PF00005 ABC transporter JI729_23865 PF02687 FtsX-like permease family JI729_23875 PF02447 GntP family permease JI729_23880 PF07702 UTRA domain JI729_23880 PF00392 Bacterial regulatory proteins, gntR family JI729_23890 PF07071 KDGP aldolase JI729_23895 PF03841 L-seryl-tRNA selenium transferase JI729_23900 PF01979 Amidohydrolase family JI729_23905 PF02557 D-alanyl-D-alanine carboxypeptidase JI729_23910 PF00512 His Kinase A (phospho-acceptor) domain JI729_23910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_23915 PF00072 Response regulator receiver domain JI729_23915 PF00486 Transcriptional regulatory protein, C terminal JI729_23920 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain JI729_23920 PF13378 Enolase C-terminal domain-like JI729_23925 PF07282 Putative transposase DNA-binding domain JI729_23925 PF01385 Probable transposase JI729_23925 PF12323 Helix-turn-helix domain JI729_23935 PF13193 AMP-binding enzyme C-terminal domain JI729_23935 PF00501 AMP-binding enzyme JI729_23940 PF00378 Enoyl-CoA hydratase/isomerase JI729_23945 PF12697 Alpha/beta hydrolase family JI729_23950 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain JI729_23950 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain JI729_23950 PF16582 Middle domain of thiamine pyrophosphate JI729_23955 PF00425 chorismate binding enzyme JI729_23960 PF01040 UbiA prenyltransferase family JI729_23965 PF01258 Prokaryotic dksA/traR C4-type zinc finger JI729_23970 PF00313 'Cold-shock' DNA-binding domain JI729_23990 PF00343 Carbohydrate phosphorylase JI729_23995 PF00534 Glycosyl transferases group 1 JI729_23995 PF08323 Starch synthase catalytic domain JI729_24000 PF00483 Nucleotidyl transferase JI729_24005 PF00483 Nucleotidyl transferase JI729_24010 PF02806 Alpha amylase, C-terminal all-beta domain JI729_24010 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) JI729_24010 PF00128 Alpha amylase, catalytic domain JI729_24025 PF00056 lactate/malate dehydrogenase, NAD binding domain JI729_24025 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JI729_24120 PF05697 Bacterial trigger factor protein (TF) JI729_24120 PF05698 Bacterial trigger factor protein (TF) C-terminus JI729_24155 PF02308 MgtC family JI729_24160 PF02254 TrkA-N domain JI729_24160 PF07885 Ion channel JI729_24165 PF08868 YugN-like family JI729_24170 PF00342 Phosphoglucose isomerase JI729_24175 PF04070 Domain of unknown function (DUF378) JI729_24180 PF00575 S1 RNA binding domain JI729_24185 PF00155 Aminotransferase class I and II JI729_24190 PF01037 Lrp/AsnC ligand binding domain JI729_24195 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain JI729_24195 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain JI729_24200 PF08386 TAP-like protein JI729_24200 PF00561 alpha/beta hydrolase fold JI729_24210 PF00155 Aminotransferase class I and II JI729_24225 PF08810 Kinase associated protein B JI729_24230 PF00929 Exonuclease JI729_24235 PF03600 Citrate transporter JI729_24250 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) JI729_24250 PF03129 Anticodon binding domain JI729_24255 PF03061 Thioesterase superfamily JI729_24265 PF02632 BioY family JI729_24270 PF00483 Nucleotidyl transferase JI729_24275 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II JI729_24275 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III JI729_24275 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain JI729_24275 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I JI729_24280 PF10372 Bacterial membrane-spanning protein N-terminus JI729_24280 PF02457 DisA bacterial checkpoint controller nucleotide-binding JI729_24295 PF00892 EamA-like transporter family JI729_24300 PF01040 UbiA prenyltransferase family JI729_24310 PF02789 Cytosol aminopeptidase family, N-terminal domain JI729_24310 PF00883 Cytosol aminopeptidase family, catalytic domain JI729_24315 PF06725 3D domain JI729_24325 PF13344 Haloacid dehalogenase-like hydrolase JI729_24325 PF00293 NUDIX domain JI729_24330 PF07992 Pyridine nucleotide-disulphide oxidoreductase JI729_24335 PF07992 Pyridine nucleotide-disulphide oxidoreductase JI729_24345 PF06445 GyrI-like small molecule binding domain JI729_24360 PF04463 Protein of unknown function (DUF523) JI729_24370 PF01521 Iron-sulphur cluster biosynthesis JI729_24375 PF01678 Diaminopimelate epimerase JI729_24380 PF07293 Protein of unknown function (DUF1450) JI729_24385 PF07992 Pyridine nucleotide-disulphide oxidoreductase JI729_24395 PF00005 ABC transporter JI729_24395 PF09383 NIL domain JI729_24400 PF03649 Uncharacterised protein family (UPF0014) JI729_24405 PF08274 PhnA Zinc-Ribbon JI729_24405 PF03831 PhnA domain JI729_24450 PF13427 Domain of unknown function (DUF4111) JI729_24450 PF01909 Nucleotidyltransferase domain JI729_24455 PF07315 Protein of unknown function (DUF1462) JI729_24460 PF01106 NifU-like domain JI729_24475 PF04608 Phosphatidylglycerophosphatase A JI729_24495 PF11202 Phosphoribosyl transferase (PRTase) JI729_24495 PF15608 PELOTA RNA binding domain JI729_24505 PF02525 Flavodoxin-like fold JI729_24510 PF13344 Haloacid dehalogenase-like hydrolase JI729_24520 PF01934 Protein of unknown function DUF86 JI729_24525 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded JI729_24540 PF06265 Protein of unknown function (DUF1027) JI729_24545 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) JI729_24550 PF07739 TipAS antibiotic-recognition domain JI729_24550 PF13411 MerR HTH family regulatory protein JI729_24555 PF10086 YhfC intramembrane metalloprotease JI729_24575 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family JI729_24575 PF04055 Radical SAM superfamily JI729_24580 PF01551 Peptidase family M23 JI729_24585 PF09560 Sporulation protein YunB (Spo_YunB) JI729_24590 PF08827 Domain of unknown function (DUF1805) JI729_24595 PF02872 5'-nucleotidase, C-terminal domain JI729_24600 PF01458 Uncharacterized protein family (UPF0051) JI729_24605 PF01592 NifU-like N terminal domain JI729_24610 PF00266 Aminotransferase class-V JI729_24615 PF01458 Uncharacterized protein family (UPF0051) JI729_24620 PF00005 ABC transporter JI729_24625 PF03180 NLPA lipoprotein JI729_24630 PF03180 NLPA lipoprotein JI729_24635 PF00528 Binding-protein-dependent transport system inner membrane component JI729_24640 PF09383 NIL domain JI729_24640 PF00005 ABC transporter JI729_24650 PF00085 Thioredoxin JI729_24655 PF01751 Toprim domain JI729_24660 PF01597 Glycine cleavage H-protein JI729_24665 PF03960 ArsC family JI729_24685 PF00056 lactate/malate dehydrogenase, NAD binding domain JI729_24685 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain JI729_24705 PF00440 Bacterial regulatory proteins, tetR family JI729_24705 PF13305 Tetracyclin repressor-like, C-terminal domain JI729_24710 PF00753 Metallo-beta-lactamase superfamily JI729_24715 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JI729_24715 PF02770 Acyl-CoA dehydrogenase, middle domain JI729_24715 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JI729_24720 PF02803 Thiolase, C-terminal domain JI729_24720 PF00108 Thiolase, N-terminal domain JI729_24725 PF00378 Enoyl-CoA hydratase/isomerase JI729_24725 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JI729_24725 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JI729_24730 PF14115 YuzL-like protein JI729_24735 PF00768 D-alanyl-D-alanine carboxypeptidase JI729_24735 PF07943 Penicillin-binding protein 5, C-terminal domain JI729_24740 PF01619 Proline dehydrogenase JI729_24745 PF10835 Protein of unknown function (DUF2573) JI729_24750 PF01910 Thiamine-binding protein JI729_24755 PF00672 HAMP domain JI729_24755 PF02743 Cache domain JI729_24755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JI729_24770 PF07690 Major Facilitator Superfamily JI729_24775 PF13520 Amino acid permease JI729_24790 PF02096 60Kd inner membrane protein JI729_24800 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) JI729_24800 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 JI729_24835 PF09335 SNARE associated Golgi protein JI729_24845 PF03734 L,D-transpeptidase catalytic domain JI729_24845 PF17969 L,D-transpeptidase C-terminal domain JI729_24850 PF00486 Transcriptional regulatory protein, C terminal JI729_24850 PF00072 Response regulator receiver domain JI729_24855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_24855 PF00989 PAS fold JI729_24855 PF16736 Single Cache-like JI729_24855 PF00512 His Kinase A (phospho-acceptor) domain JI729_24870 PF08264 Anticodon-binding domain of tRNA JI729_24870 PF09334 tRNA synthetases class I (M) JI729_24880 PF00672 HAMP domain JI729_24880 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JI729_24880 PF02743 Cache domain JI729_24885 PF02743 Cache domain JI729_24885 PF00672 HAMP domain JI729_24885 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JI729_24890 PF01883 Iron-sulfur cluster assembly protein JI729_24895 PF03413 Peptidase propeptide and YPEB domain JI729_24895 PF07504 Fungalysin/Thermolysin Propeptide Motif JI729_24895 PF01447 Thermolysin metallopeptidase, catalytic domain JI729_24895 PF02868 Thermolysin metallopeptidase, alpha-helical domain JI729_24900 PF17954 Quercetinase C-terminal cupin domain JI729_24900 PF02678 Pirin JI729_24905 PF01047 MarR family JI729_24915 PF00999 Sodium/hydrogen exchanger family JI729_24920 PF02080 TrkA-C domain JI729_24925 PF01235 Sodium:alanine symporter family JI729_24930 PF00210 Ferritin-like domain JI729_24945 PF03641 Possible lysine decarboxylase JI729_24955 PF00210 Ferritin-like domain JI729_24960 PF04235 Protein of unknown function (DUF418) JI729_24965 PF07662 Na+ dependent nucleoside transporter C-terminus JI729_24965 PF01773 Na+ dependent nucleoside transporter N-terminus JI729_24970 PF07662 Na+ dependent nucleoside transporter C-terminus JI729_24970 PF01773 Na+ dependent nucleoside transporter N-terminus JI729_24975 PF01235 Sodium:alanine symporter family JI729_24980 PF01235 Sodium:alanine symporter family JI729_24985 PF13460 NAD(P)H-binding JI729_25000 PF00248 Aldo/keto reductase family JI729_25005 PF07690 Major Facilitator Superfamily JI729_25010 PF01638 HxlR-like helix-turn-helix JI729_25015 PF07849 Protein of unknown function (DUF1641) JI729_25020 PF07992 Pyridine nucleotide-disulphide oxidoreductase JI729_25025 PF00579 tRNA synthetases class I (W and Y) JI729_25025 PF01479 S4 domain JI729_25030 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain JI729_25030 PF01565 FAD binding domain JI729_25040 PF17202 Single cache domain 3 JI729_25040 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JI729_25040 PF00672 HAMP domain JI729_25050 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JI729_25055 PF02537 CrcB-like protein, Camphor Resistance (CrcB) JI729_25070 PF07690 Major Facilitator Superfamily JI729_25075 PF12848 ABC transporter JI729_25075 PF00005 ABC transporter JI729_25080 PF13302 Acetyltransferase (GNAT) domain JI729_25090 PF06146 Phosphate-starvation-inducible E JI729_25100 PF00857 Isochorismatase family JI729_25105 PF01037 Lrp/AsnC ligand binding domain JI729_25115 PF17440 Thiol-activated cytolysin beta sandwich domain JI729_25115 PF01289 Thiol-activated cytolysin JI729_25120 PF00005 ABC transporter JI729_25125 PF01032 FecCD transport family JI729_25130 PF01032 FecCD transport family JI729_25140 PF00072 Response regulator receiver domain JI729_25140 PF00486 Transcriptional regulatory protein, C terminal JI729_25150 PF01668 SmpB protein JI729_25160 PF08206 Ribonuclease B OB domain JI729_25160 PF00773 RNB domain JI729_25160 PF00575 S1 RNA binding domain JI729_25160 PF17876 Cold shock domain JI729_25165 PF12146 Serine aminopeptidase, S33 JI729_25170 PF03840 Preprotein translocase SecG subunit JI729_25175 PF04172 LrgB-like family JI729_25180 PF03788 LrgA family JI729_25185 PF01156 Inosine-uridine preferring nucleoside hydrolase JI729_25190 PF03952 Enolase, N-terminal domain JI729_25190 PF00113 Enolase, C-terminal TIM barrel domain JI729_25195 PF01676 Metalloenzyme superfamily JI729_25195 PF06415 BPG-independent PGAM N-terminus (iPGM_N) JI729_25200 PF00121 Triosephosphate isomerase JI729_25205 PF00162 Phosphoglycerate kinase JI729_25210 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain JI729_25210 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain JI729_25215 PF04198 Putative sugar-binding domain JI729_25225 PF04963 Sigma-54 factor, core binding domain JI729_25225 PF00309 Sigma-54 factor, Activator interacting domain (AID) JI729_25225 PF04552 Sigma-54, DNA binding domain JI729_25235 PF00005 ABC transporter JI729_25235 PF13732 Domain of unknown function (DUF4162) JI729_25240 PF07730 Histidine kinase JI729_25240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_25245 PF00196 Bacterial regulatory proteins, luxR family JI729_25245 PF00072 Response regulator receiver domain JI729_25265 PF03862 SpoVAC/SpoVAEB sporulation membrane protein JI729_25270 PF07451 Stage V sporulation protein AD (SpoVAD) JI729_25275 PF03862 SpoVAC/SpoVAEB sporulation membrane protein JI729_25285 PF04239 Protein of unknown function (DUF421) JI729_25290 PF00574 Clp protease JI729_25295 PF00381 PTS HPr component phosphorylation site JI729_25300 PF02650 WhiA C-terminal HTH domain JI729_25300 PF10298 WhiA N-terminal LAGLIDADG-like domain JI729_25300 PF14527 WhiA LAGLIDADG-like domain JI729_25305 PF01933 Uncharacterised protein family UPF0052 JI729_25310 PF03668 P-loop ATPase protein family JI729_25315 PF00293 NUDIX domain JI729_25325 PF07992 Pyridine nucleotide-disulphide oxidoreductase JI729_25335 PF14602 Hexapeptide repeat of succinyl-transferase JI729_25340 PF13419 Haloacid dehalogenase-like hydrolase JI729_25345 PF01790 Prolipoprotein diacylglyceryl transferase JI729_25350 PF07475 HPr Serine kinase C-terminal domain JI729_25350 PF02603 HPr Serine kinase N terminus JI729_25355 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV JI729_25365 PF17755 UvrA DNA-binding domain JI729_25365 PF17760 UvrA interaction domain JI729_25365 PF00005 ABC transporter JI729_25370 PF02151 UvrB/uvrC motif JI729_25370 PF17757 UvrB interaction domain JI729_25370 PF04851 Type III restriction enzyme, res subunit JI729_25370 PF00271 Helicase conserved C-terminal domain JI729_25370 PF12344 Ultra-violet resistance protein B JI729_25380 PF13411 MerR HTH family regulatory protein JI729_25380 PF07739 TipAS antibiotic-recognition domain JI729_25395 PF03601 Conserved hypothetical protein 698 JI729_25400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JI729_25400 PF03466 LysR substrate binding domain JI729_25405 PF09278 MerR, DNA binding JI729_25405 PF00376 MerR family regulatory protein JI729_25410 PF03358 NADPH-dependent FMN reductase JI729_25415 PF00005 ABC transporter JI729_25415 PF12848 ABC transporter JI729_25420 PF01906 Putative heavy-metal-binding JI729_25425 PF00664 ABC transporter transmembrane region JI729_25425 PF00005 ABC transporter JI729_25430 PF17820 PDZ domain JI729_25435 PF03572 Peptidase family S41 JI729_25435 PF17820 PDZ domain JI729_25435 PF01471 Putative peptidoglycan binding domain JI729_25440 PF02687 FtsX-like permease family JI729_25440 PF18075 FtsX extracellular domain JI729_25445 PF00005 ABC transporter JI729_25460 PF07517 SecA DEAD-like domain JI729_25460 PF07516 SecA Wing and Scaffold domain JI729_25460 PF01043 SecA preprotein cross-linking domain JI729_25460 PF02810 SEC-C motif JI729_25470 PF00005 ABC transporter JI729_25500 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus JI729_25500 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein JI729_25505 PF00313 'Cold-shock' DNA-binding domain JI729_25515 PF04851 Type III restriction enzyme, res subunit JI729_25515 PF00271 Helicase conserved C-terminal domain JI729_25520 PF01476 LysM domain JI729_25520 PF00877 NlpC/P60 family JI729_25525 PF01638 HxlR-like helix-turn-helix JI729_25530 PF02645 Uncharacterised protein, DegV family COG1307 JI729_25535 PF09186 Domain of unknown function (DUF1949) JI729_25535 PF01205 Uncharacterized protein family UPF0029 JI729_25540 PF03816 Cell envelope-related transcriptional attenuator domain JI729_25545 PF02350 UDP-N-acetylglucosamine 2-epimerase JI729_25550 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain JI729_25550 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain JI729_25550 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain JI729_25555 PF00953 Glycosyl transferase family 4 JI729_25560 PF01522 Polysaccharide deacetylase JI729_25565 PF00158 Sigma-54 interaction domain JI729_25565 PF03610 PTS system fructose IIA component JI729_25565 PF00874 PRD domain JI729_25575 PF02417 Chromate transporter JI729_25580 PF04794 YdjC-like protein JI729_25585 PF11975 Family 4 glycosyl hydrolase C-terminal domain JI729_25585 PF02056 Family 4 glycosyl hydrolase JI729_25590 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit JI729_25595 PF02378 Phosphotransferase system, EIIC JI729_25600 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JI729_25605 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit JI729_25610 PF02378 Phosphotransferase system, EIIC JI729_25615 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit JI729_25620 PF00375 Sodium:dicarboxylate symporter family JI729_25640 PF03466 LysR substrate binding domain JI729_25640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family JI729_25655 PF01654 Cytochrome bd terminal oxidase subunit I JI729_25660 PF02322 Cytochrome bd terminal oxidase subunit II JI729_25665 PF02040 Arsenical pump membrane protein JI729_25670 PF01964 Radical SAM ThiC family JI729_25670 PF13667 ThiC-associated domain JI729_25675 PF02652 L-lactate permease JI729_25685 PF09988 Uncharacterized metal-binding protein (DUF2227) JI729_25695 PF00884 Sulfatase JI729_25700 PF01063 Amino-transferase class IV JI729_25705 PF00877 NlpC/P60 family JI729_25705 PF01476 LysM domain JI729_25710 PF01773 Na+ dependent nucleoside transporter N-terminus JI729_25710 PF07662 Na+ dependent nucleoside transporter C-terminus JI729_25725 PF02028 BCCT, betaine/carnitine/choline family transporter JI729_25730 PF01476 LysM domain JI729_25730 PF06725 3D domain JI729_25755 PF04434 SWIM zinc finger JI729_25760 PF00176 SNF2 family N-terminal domain JI729_25760 PF00271 Helicase conserved C-terminal domain JI729_25760 PF12419 SNF2 Helicase protein JI729_25790 PF04542 Sigma-70 region 2 JI729_25790 PF04545 Sigma-70, region 4 JI729_25820 PF02687 FtsX-like permease family JI729_25820 PF12704 MacB-like periplasmic core domain JI729_25825 PF00005 ABC transporter JI729_25845 PF07690 Major Facilitator Superfamily JI729_25860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_25860 PF00512 His Kinase A (phospho-acceptor) domain JI729_25860 PF16736 Single Cache-like JI729_25860 PF00989 PAS fold JI729_25865 PF00486 Transcriptional regulatory protein, C terminal JI729_25865 PF00072 Response regulator receiver domain JI729_25870 PF16363 GDP-mannose 4,6 dehydratase JI729_25875 PF16363 GDP-mannose 4,6 dehydratase JI729_25885 PF03816 Cell envelope-related transcriptional attenuator domain JI729_25895 PF04230 Polysaccharide pyruvyl transferase JI729_25900 PF00535 Glycosyl transferase family 2 JI729_25905 PF00534 Glycosyl transferases group 1 JI729_25905 PF13439 Glycosyltransferase Family 4 JI729_25915 PF02397 Bacterial sugar transferase JI729_25920 PF00535 Glycosyl transferase family 2 JI729_25925 PF00483 Nucleotidyl transferase JI729_25935 PF13614 AAA domain JI729_25940 PF02706 Chain length determinant protein JI729_25940 PF13807 G-rich domain on putative tyrosine kinase JI729_25945 PF13614 AAA domain JI729_25950 PF07977 FabA-like domain JI729_25960 PF12116 Stage III sporulation protein D JI729_25970 PF01551 Peptidase family M23 JI729_25980 PF00005 ABC transporter JI729_25985 PF00072 Response regulator receiver domain JI729_25985 PF04397 LytTr DNA-binding domain JI729_25990 PF08486 Stage II sporulation protein JI729_25995 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JI729_26005 PF06612 Protein of unknown function (DUF1146) JI729_26010 PF00361 Proton-conducting membrane transporter JI729_26015 PF00361 Proton-conducting membrane transporter JI729_26020 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus JI729_26020 PF00361 Proton-conducting membrane transporter JI729_26020 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus JI729_26025 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L JI729_26030 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 JI729_26040 PF00146 NADH dehydrogenase JI729_26045 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit JI729_26050 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit JI729_26055 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit JI729_26060 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 JI729_26065 PF03707 Bacterial signalling protein N terminal repeat JI729_26065 PF00563 EAL domain JI729_26065 PF00990 Diguanylate cyclase, GGDEF domain JI729_26080 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain JI729_26080 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain JI729_26085 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JI729_26085 PF02874 ATP synthase alpha/beta family, beta-barrel domain JI729_26090 PF00231 ATP synthase JI729_26095 PF02874 ATP synthase alpha/beta family, beta-barrel domain JI729_26095 PF00306 ATP synthase alpha/beta chain, C terminal domain JI729_26095 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JI729_26100 PF00213 ATP synthase delta (OSCP) subunit JI729_26105 PF00430 ATP synthase B/B' CF(0) JI729_26110 PF00137 ATP synthase subunit C JI729_26115 PF00119 ATP synthase A chain JI729_26120 PF03899 ATP synthase I chain JI729_26140 PF00464 Serine hydroxymethyltransferase JI729_26145 PF04260 Protein of unknown function (DUF436) JI729_26150 PF02502 Ribose/Galactose Isomerase JI729_26155 PF01451 Low molecular weight phosphotyrosine protein phosphatase JI729_26160 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 JI729_26165 PF07681 DoxX JI729_26170 PF01613 Flavin reductase like domain JI729_26180 PF02659 Putative manganese efflux pump JI729_26185 PF03481 Putative GTP-binding controlling metal-binding JI729_26185 PF01300 Telomere recombination JI729_26195 PF09551 Stage II sporulation protein R (spore_II_R) JI729_26200 PF17827 PrmC N-terminal domain JI729_26200 PF13847 Methyltransferase domain JI729_26205 PF00472 RF-1 domain JI729_26205 PF03462 PCRF domain JI729_26210 PF00265 Thymidine kinase JI729_26215 PF01197 Ribosomal protein L31 JI729_26220 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain JI729_26220 PF07497 Rho termination factor, RNA-binding domain JI729_26220 PF07498 Rho termination factor, N-terminal domain JI729_26225 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded JI729_26230 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) JI729_26235 PF01116 Fructose-bisphosphate aldolase class-II JI729_26240 PF00072 Response regulator receiver domain JI729_26245 PF10740 Domain of unknown function (DUF2529) JI729_26250 PF06418 CTP synthase N-terminus JI729_26250 PF00117 Glutamine amidotransferase class-I JI729_26255 PF05066 HB1, ASXL, restriction endonuclease HTH domain JI729_26265 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JI729_26265 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JI729_26265 PF02770 Acyl-CoA dehydrogenase, middle domain JI729_26270 PF02770 Acyl-CoA dehydrogenase, middle domain JI729_26270 PF00441 Acyl-CoA dehydrogenase, C-terminal domain JI729_26270 PF02771 Acyl-CoA dehydrogenase, N-terminal domain JI729_26275 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain JI729_26275 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain JI729_26280 PF02803 Thiolase, C-terminal domain JI729_26280 PF00108 Thiolase, N-terminal domain JI729_26285 PF02754 Cysteine-rich domain JI729_26285 PF13183 4Fe-4S dicluster domain JI729_26290 PF13091 PLD-like domain JI729_26295 PF03851 UV-endonuclease UvdE JI729_26300 PF03707 Bacterial signalling protein N terminal repeat JI729_26300 PF00563 EAL domain JI729_26300 PF00990 Diguanylate cyclase, GGDEF domain JI729_26315 PF03413 Peptidase propeptide and YPEB domain JI729_26315 PF01447 Thermolysin metallopeptidase, catalytic domain JI729_26315 PF02868 Thermolysin metallopeptidase, alpha-helical domain JI729_26315 PF07504 Fungalysin/Thermolysin Propeptide Motif JI729_26320 PF00196 Bacterial regulatory proteins, luxR family JI729_26320 PF00072 Response regulator receiver domain JI729_26325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_26325 PF07730 Histidine kinase JI729_26335 PF00005 ABC transporter JI729_26340 PF00557 Metallopeptidase family M24 JI729_26350 PF02225 PA domain JI729_26350 PF04389 Peptidase family M28 JI729_26370 PF08281 Sigma-70, region 4 JI729_26370 PF04542 Sigma-70 region 2 JI729_26375 PF00750 tRNA synthetases class I (R) JI729_26375 PF05746 DALR anticodon binding domain JI729_26375 PF03485 Arginyl tRNA synthetase N terminal domain JI729_26380 PF09148 Domain of unknown function (DUF1934) JI729_26385 PF17676 LD-carboxypeptidase C-terminal domain JI729_26385 PF02016 LD-carboxypeptidase N-terminal domain JI729_26400 PF00491 Arginase family JI729_26405 PF17284 Spermidine synthase tetramerisation domain JI729_26410 PF07690 Major Facilitator Superfamily JI729_26415 PF13411 MerR HTH family regulatory protein JI729_26420 PF03009 Glycerophosphoryl diester phosphodiesterase family JI729_26425 PF00912 Transglycosylase JI729_26425 PF00905 Penicillin binding protein transpeptidase domain JI729_26430 PF08741 YwhD family JI729_26435 PF02163 Peptidase family M50 JI729_26440 PF01361 Tautomerase enzyme JI729_26445 PF01966 HD domain JI729_26450 PF01497 Periplasmic binding protein JI729_26455 PF00005 ABC transporter JI729_26460 PF01032 FecCD transport family JI729_26465 PF01032 FecCD transport family JI729_26470 PF07293 Protein of unknown function (DUF1450) JI729_26480 PF03099 Biotin/lipoate A/B protein ligase family JI729_26485 PF01515 Phosphate acetyl/butaryl transferase JI729_26490 PF06778 Chlorite dismutase JI729_26495 PF07943 Penicillin-binding protein 5, C-terminal domain JI729_26495 PF00768 D-alanyl-D-alanine carboxypeptidase JI729_26500 PF07486 Cell Wall Hydrolase JI729_26505 PF09671 Spore coat protein (Spore_GerQ) JI729_26510 PF04241 Protein of unknown function (DUF423) JI729_26520 PF02254 TrkA-N domain JI729_26520 PF07885 Ion channel JI729_26525 PF00860 Permease family JI729_26535 PF12823 Domain of unknown function (DUF3817) JI729_26540 PF03167 Uracil DNA glycosylase superfamily JI729_26545 PF12679 ABC-2 family transporter protein JI729_26550 PF00005 ABC transporter JI729_26555 PF13472 GDSL-like Lipase/Acylhydrolase family JI729_26560 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family JI729_26560 PF00356 Bacterial regulatory proteins, lacI family JI729_26570 PF01842 ACT domain JI729_26570 PF03447 Homoserine dehydrogenase, NAD binding domain JI729_26570 PF00742 Homoserine dehydrogenase JI729_26575 PF04204 Homoserine O-succinyltransferase JI729_26580 PF01053 Cys/Met metabolism PLP-dependent enzyme JI729_26590 PF13419 Haloacid dehalogenase-like hydrolase JI729_26595 PF00027 Cyclic nucleotide-binding domain JI729_26600 PF02525 Flavodoxin-like fold JI729_26605 PF00196 Bacterial regulatory proteins, luxR family JI729_26605 PF00072 Response regulator receiver domain JI729_26610 PF07730 Histidine kinase JI729_26610 PF13185 GAF domain JI729_26615 PF08543 Phosphomethylpyrimidine kinase JI729_26620 PF07694 5TMR of 5TMR-LYT JI729_26620 PF00990 Diguanylate cyclase, GGDEF domain JI729_26625 PF04328 Selenoprotein, putative JI729_26630 PF02554 Carbon starvation protein CstA JI729_26630 PF13722 5TM C-terminal transporter carbon starvation CstA JI729_26635 PF00072 Response regulator receiver domain JI729_26635 PF04397 LytTr DNA-binding domain JI729_26640 PF07690 Major Facilitator Superfamily JI729_26645 PF03808 Glycosyl transferase WecB/TagA/CpsF family JI729_26650 PF00534 Glycosyl transferases group 1 JI729_26650 PF13439 Glycosyltransferase Family 4 JI729_26660 PF03458 UPF0126 domain JI729_26665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain JI729_26675 PF03061 Thioesterase superfamily JI729_26680 PF00535 Glycosyl transferase family 2 JI729_26690 PF00535 Glycosyl transferase family 2 JI729_26705 PF00535 Glycosyl transferase family 2 JI729_26710 PF12848 ABC transporter JI729_26710 PF00005 ABC transporter JI729_26715 PF00440 Bacterial regulatory proteins, tetR family JI729_26720 PF00873 AcrB/AcrD/AcrF family JI729_26725 PF01641 SelR domain JI729_26725 PF01625 Peptide methionine sulfoxide reductase JI729_26730 PF01594 AI-2E family transporter JI729_26735 PF04172 LrgB-like family JI729_26740 PF03788 LrgA family JI729_26745 PF00072 Response regulator receiver domain JI729_26745 PF04397 LytTr DNA-binding domain JI729_26750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_26750 PF06580 Histidine kinase JI729_26750 PF13492 GAF domain JI729_26750 PF07694 5TMR of 5TMR-LYT JI729_26755 PF07690 Major Facilitator Superfamily JI729_26760 PF02028 BCCT, betaine/carnitine/choline family transporter JI729_26765 PF02898 Nitric oxide synthase, oxygenase domain JI729_26770 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain JI729_26770 PF02777 Iron/manganese superoxide dismutases, C-terminal domain JI729_26780 PF02293 AmiS/UreI family transporter JI729_26785 PF16363 GDP-mannose 4,6 dehydratase JI729_26790 PF03006 Haemolysin-III related JI729_26800 PF00271 Helicase conserved C-terminal domain JI729_26800 PF00270 DEAD/DEAH box helicase JI729_26800 PF03880 DbpA RNA binding domain JI729_26805 PF00478 IMP dehydrogenase / GMP reductase domain JI729_26825 PF13426 PAS domain JI729_26825 PF13188 PAS domain JI729_26825 PF00989 PAS fold JI729_26825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_26825 PF00512 His Kinase A (phospho-acceptor) domain JI729_26830 PF02590 Predicted SPOUT methyltransferase JI729_26840 PF13180 PDZ domain JI729_26845 PF00753 Metallo-beta-lactamase superfamily JI729_26850 PF09648 YycH protein JI729_26860 PF13426 PAS domain JI729_26860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase JI729_26860 PF00512 His Kinase A (phospho-acceptor) domain JI729_26860 PF00672 HAMP domain JI729_26865 PF00072 Response regulator receiver domain JI729_26865 PF00486 Transcriptional regulatory protein, C terminal JI729_26890 PF00709 Adenylosuccinate synthetase JI729_26895 PF00772 DnaB-like helicase N terminal domain JI729_26895 PF03796 DnaB-like helicase C terminal domain JI729_26900 PF03948 Ribosomal protein L9, C-terminal domain JI729_26900 PF01281 Ribosomal protein L9, N-terminal domain JI729_26905 PF02272 DHHA1 domain JI729_26905 PF01368 DHH family JI729_26910 PF09991 Predicted membrane protein (DUF2232) JI729_26915 PF01084 Ribosomal protein S18 JI729_26920 PF00436 Single-strand binding protein family JI729_26925 PF01250 Ribosomal protein S6 JI729_26930 PF01926 50S ribosome-binding GTPase JI729_26930 PF06071 Protein of unknown function (DUF933) JI729_26935 PF06107 Bacterial protein of unknown function (DUF951) JI729_26940 PF00924 Mechanosensitive ion channel JI729_26945 PF06866 Protein of unknown function (DUF1256) JI729_26950 PF17762 HTH domain found in ParB protein JI729_26950 PF02195 ParB-like nuclease domain JI729_26955 PF13614 AAA domain JI729_26960 PF17762 HTH domain found in ParB protein JI729_26960 PF02195 ParB-like nuclease domain JI729_26965 PF02527 rRNA small subunit methyltransferase G JI729_26970 PF01134 Glucose inhibited division protein A JI729_26970 PF13932 GidA associated domain JI729_26975 PF12631 MnmE helical domain JI729_26975 PF10396 GTP-binding protein TrmE N-terminus JI729_26975 PF01926 50S ribosome-binding GTPase JI729_26980 PF01424 R3H domain JI729_26980 PF14804 Jag N-terminus JI729_26985 PF02096 60Kd inner membrane protein JI729_26990 PF00825 Ribonuclease P JI729_26995 PF00468 Ribosomal protein L34