QR42_00005 SM00382 ATPases associated with a variety of cellular activities QR42_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain QR42_00010 SM00480 DNA polymerase III beta subunit QR42_00030 SM00387 Histidine kinase-like ATPases QR42_00030 SM00433 TopoisomeraseII QR42_00035 SM00434 DNA Topoisomerase IV QR42_00070 SM00116 Domain in cystathionine beta-synthase and other proteins. QR42_00070 SM01240 QR42_00070 QR42_00075 SM00936 Penicillin-binding protein 5, C-terminal domain QR42_00080 SM00345 helix_turn_helix gluconate operon transcriptional repressor QR42_00100 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QR42_00120 SM00257 Lysin motif QR42_00120 SM00636 QR42_00120 QR42_00135 SM00382 ATPases associated with a variety of cellular activities QR42_00145 SM00493 QR42_00145 QR42_00240 SM00465 GIY-YIG type nucleases (URI domain) QR42_00250 SM00966 SpoVT / AbrB like domain QR42_00265 SM01208 QR42_00265 QR42_00270 SM00493 QR42_00270 QR42_00275 SM00650 Ribosomal RNA adenine dimethylases QR42_00320 SM01400 QR42_00320 QR42_00340 SM00487 DEAD-like helicases superfamily QR42_00340 SM00490 helicase superfamily c-terminal domain QR42_00340 SM00982 QR42_00340 QR42_00340 SM01058 CarD-like/TRCF domain QR42_00345 SM00966 SpoVT / AbrB like domain QR42_00360 SM00363 S4 RNA-binding domain QR42_00380 SM00316 Ribosomal protein S1-like RNA-binding domain QR42_00395 SM00331 Sigma factor PP2C-like phosphatases QR42_00395 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain QR42_00405 SM00220 Serine/Threonine protein kinases, catalytic domain QR42_00410 SM00977 TilS substrate C-terminal domain QR42_00420 SM00382 ATPases associated with a variety of cellular activities QR42_00465 SM00905 Dihydroneopterin aldolase QR42_00475 SM00530 Helix-turn-helix XRE-family like proteins QR42_00580 SM00382 ATPases associated with a variety of cellular activities QR42_00580 SM01086 C-terminal, D2-small domain, of ClpB protein QR42_00585 SM00382 ATPases associated with a variety of cellular activities QR42_00595 SM00670 Large family of predicted nucleotide-binding domains QR42_00620 SM00840 QR42_00620 QR42_00625 SM00535 Ribonuclease III family QR42_00630 SM00967 RNA 2'-O ribose methyltransferase substrate binding QR42_00650 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. QR42_00650 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. QR42_00655 SM00649 Ribosomal protein L11/L12 QR42_00685 SM00663 RNA polymerase I subunit A N-terminus QR42_00705 SM00838 Elongation factor G C-terminus QR42_00705 SM00889 Elongation factor G, domain IV QR42_00720 SM01403 QR42_00720 QR42_00740 SM01382 QR42_00740 QR42_00740 SM01383 QR42_00740 QR42_00755 SM00322 K homology RNA-binding domain QR42_00775 SM01374 QR42_00775 QR42_00780 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. QR42_00840 SM00316 Ribosomal protein S1-like RNA-binding domain QR42_00860 SM00662 RNA polymerases D QR42_00870 SM00382 ATPases associated with a variety of cellular activities QR42_00875 SM00382 ATPases associated with a variety of cellular activities QR42_00925 SM00646 QR42_00925 QR42_00940 SM01251 QR42_00940 QR42_01090 SM00382 ATPases associated with a variety of cellular activities QR42_01105 SM00382 ATPases associated with a variety of cellular activities QR42_01135 SM00345 helix_turn_helix gluconate operon transcriptional repressor QR42_01140 SM00382 ATPases associated with a variety of cellular activities QR42_01150 SM00530 Helix-turn-helix XRE-family like proteins QR42_01205 SM00825 Beta-ketoacyl synthase QR42_01210 SM00530 Helix-turn-helix XRE-family like proteins QR42_01235 SM00450 Rhodanese Homology Domain QR42_01240 SM00450 Rhodanese Homology Domain QR42_01245 SM00450 Rhodanese Homology Domain QR42_01245 SM00849 Metallo-beta-lactamase superfamily QR42_01260 SM00946 Prolyl-tRNA synthetase, C-terminal QR42_01275 SM00347 helix_turn_helix multiple antibiotic resistance protein QR42_01325 SM00450 Rhodanese Homology Domain QR42_01340 SM01061 CAT RNA binding domain QR42_01375 SM00872 Alpha mannosidase, middle domain QR42_01475 SM00829 Enoylreductase QR42_01480 SM00347 helix_turn_helix multiple antibiotic resistance protein QR42_01515 SM00387 Histidine kinase-like ATPases QR42_01520 SM00448 cheY-homologous receiver domain QR42_01535 SM00421 helix_turn_helix, Lux Regulon QR42_01535 SM00448 cheY-homologous receiver domain QR42_01540 SM00387 Histidine kinase-like ATPases QR42_01555 SM00387 Histidine kinase-like ATPases QR42_01560 SM00448 cheY-homologous receiver domain QR42_01560 SM00850 LytTr DNA-binding domain QR42_01565 SM00382 ATPases associated with a variety of cellular activities QR42_01660 SM00116 Domain in cystathionine beta-synthase and other proteins. QR42_01660 SM00382 ATPases associated with a variety of cellular activities QR42_01705 SM00354 helix_turn _helix lactose operon repressor QR42_01800 SM00346 helix_turn_helix isocitrate lyase regulation QR42_01810 SM01130 QR42_01810 QR42_01815 SM00354 helix_turn _helix lactose operon repressor QR42_01880 SM00062 Bacterial periplasmic substrate-binding proteins QR42_01895 SM00344 helix_turn_helix ASNC type QR42_01910 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QR42_01910 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QR42_01940 SM00382 ATPases associated with a variety of cellular activities QR42_01955 SM00823 Phosphopantetheine attachment site QR42_01960 SM00823 Phosphopantetheine attachment site QR42_01965 SM00823 Phosphopantetheine attachment site QR42_01970 SM00822 QR42_01970 QR42_01975 SM00822 QR42_01975 QR42_01980 SM00824 Thioesterase QR42_01990 SM00345 helix_turn_helix gluconate operon transcriptional repressor QR42_02025 SM00382 ATPases associated with a variety of cellular activities QR42_02035 SM00062 Bacterial periplasmic substrate-binding proteins QR42_02060 SM00345 helix_turn_helix gluconate operon transcriptional repressor QR42_02060 SM00895 QR42_02060 QR42_02085 SM00710 Parallel beta-helix repeats QR42_02100 SM00062 Bacterial periplasmic substrate-binding proteins QR42_02100 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. QR42_02110 SM00382 ATPases associated with a variety of cellular activities QR42_02130 SM00448 cheY-homologous receiver domain QR42_02130 SM00862 Transcriptional regulatory protein, C terminal QR42_02135 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QR42_02135 SM00387 Histidine kinase-like ATPases QR42_02135 SM00388 His Kinase A (phosphoacceptor) domain QR42_02140 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. QR42_02165 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor QR42_02170 SM00345 helix_turn_helix gluconate operon transcriptional repressor QR42_02220 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QR42_02220 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QR42_02220 SM01049 QR42_02220 QR42_02245 SM00894 Excalibur calcium-binding domain QR42_02270 SM00796 Allophanate hydrolase subunit 1 QR42_02275 SM00797 Allophanate hydrolase subunit 2 QR42_02280 SM00346 helix_turn_helix isocitrate lyase regulation QR42_02320 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor QR42_02330 SM00829 Enoylreductase QR42_02405 SM00345 helix_turn_helix gluconate operon transcriptional repressor QR42_02405 SM00895 QR42_02405 QR42_02410 SM00342 helix_turn_helix, arabinose operon control protein QR42_02420 SM01329 QR42_02420 QR42_02425 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain QR42_02425 SM00437 Bacterial DNA topoisomerase I DNA-binding domain QR42_02425 SM00493 QR42_02425 QR42_02435 SM00267 diguanylate cyclase QR42_02510 SM00091 PAS domain QR42_02510 SM00387 Histidine kinase-like ATPases QR42_02515 SM00448 cheY-homologous receiver domain QR42_02535 SM00382 ATPases associated with a variety of cellular activities QR42_02575 SM00487 DEAD-like helicases superfamily QR42_02575 SM00490 helicase superfamily c-terminal domain QR42_02605 SM01005 Alanine racemase, C-terminal domain QR42_02635 SM00331 Sigma factor PP2C-like phosphatases QR42_02655 SM00331 Sigma factor PP2C-like phosphatases QR42_02655 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain QR42_02660 SM00316 Ribosomal protein S1-like RNA-binding domain QR42_02660 SM00732 Likely ribonuclease with RNase H fold. QR42_02665 SM00731 SprT homologues. QR42_02675 SM00861 Transketolase, pyrimidine binding domain QR42_02690 SM00382 ATPases associated with a variety of cellular activities QR42_02735 SM00357 Cold shock protein domain QR42_02740 SM01058 CarD-like/TRCF domain QR42_02745 SM00829 Enoylreductase QR42_02750 SM00422 helix_turn_helix, mercury resistance QR42_02805 SM00870 QR42_02805 QR42_02815 SM00347 helix_turn_helix multiple antibiotic resistance protein QR42_02870 SM00347 helix_turn_helix multiple antibiotic resistance protein QR42_02890 SM00530 Helix-turn-helix XRE-family like proteins QR42_03000 SM00382 ATPases associated with a variety of cellular activities QR42_03010 SM00881 CoA binding domain QR42_03040 SM00883 Chaperonin 10 Kd subunit QR42_03125 SM00460 Transglutaminase/protease-like homologues QR42_03140 SM00342 helix_turn_helix, arabinose operon control protein QR42_03145 SM00917 LeuA allosteric (dimerisation) domain QR42_03220 SM01001 AIR carboxylase QR42_03230 SM00998 Adenylosuccinate lyase C-terminus QR42_03245 SM01211 QR42_03245 QR42_03270 SM00798 AICARFT/IMPCHase bienzyme QR42_03270 SM00851 MGS-like domain QR42_03275 SM01209 QR42_03275 QR42_03275 SM01210 QR42_03275 QR42_03300 SM00882 Coenzyme A transferase QR42_03305 SM00882 Coenzyme A transferase QR42_03355 SM00278 Helix-hairpin-helix DNA-binding motif class 1 QR42_03355 SM00292 breast cancer carboxy-terminal domain QR42_03355 SM00532 Ligase N family QR42_03390 SM00845 GatB domain QR42_03410 SM00046 Diacylglycerol kinase catalytic domain (presumed) QR42_03580 SM00028 Tetratricopeptide repeats QR42_03585 SM00382 ATPases associated with a variety of cellular activities QR42_03595 SM00422 helix_turn_helix, mercury resistance QR42_03605 SM00382 ATPases associated with a variety of cellular activities QR42_03610 SM00487 DEAD-like helicases superfamily QR42_03610 SM00490 helicase superfamily c-terminal domain QR42_03625 SM00829 Enoylreductase QR42_03655 SM00320 WD40 repeats QR42_03675 SM00387 Histidine kinase-like ATPases QR42_03680 SM00448 cheY-homologous receiver domain QR42_03695 SM00631 QR42_03695 QR42_03765 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QR42_03765 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QR42_03780 SM00642 Alpha-amylase domain QR42_03785 SM00345 helix_turn_helix gluconate operon transcriptional repressor QR42_03785 SM00866 QR42_03785 QR42_03815 SM00226 Low molecular weight phosphatase family QR42_03890 SM00478 endonuclease III QR42_03910 SM00422 helix_turn_helix, mercury resistance QR42_03910 SM00871 Bacterial transcription activator, effector binding domain QR42_03925 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain QR42_04005 SM00342 helix_turn_helix, arabinose operon control protein QR42_04015 SM00382 ATPases associated with a variety of cellular activities QR42_04040 SM00829 Enoylreductase QR42_04055 SM00347 helix_turn_helix multiple antibiotic resistance protein QR42_04075 SM00530 Helix-turn-helix XRE-family like proteins QR42_04130 SM00835 Cupin QR42_04150 SM00478 endonuclease III QR42_04180 SM00382 ATPases associated with a variety of cellular activities QR42_04185 SM00382 ATPases associated with a variety of cellular activities QR42_04190 SM00382 ATPases associated with a variety of cellular activities QR42_04350 SM00855 Phosphoglycerate mutase family QR42_04395 SM00382 ATPases associated with a variety of cellular activities QR42_04400 SM00062 Bacterial periplasmic substrate-binding proteins QR42_04420 SM00382 ATPases associated with a variety of cellular activities QR42_04455 SM00567 E-Z type HEAT repeats QR42_04475 SM00763 PrkA AAA domain QR42_04505 SM00357 Cold shock protein domain QR42_04510 SM00267 diguanylate cyclase QR42_04540 SM00138 Methyltransferase, chemotaxis proteins QR42_04540 SM00387 Histidine kinase-like ATPases QR42_04540 SM00388 His Kinase A (phosphoacceptor) domain QR42_04545 SM00318 Staphylococcal nuclease homologues QR42_04620 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. QR42_04625 SM00421 helix_turn_helix, Lux Regulon QR42_04625 SM00448 cheY-homologous receiver domain QR42_04645 SM01060 QR42_04645 QR42_04665 SM00098 Alkaline phosphatase homologues QR42_04670 SM00257 Lysin motif QR42_04695 SM00563 Phosphate acyltransferases QR42_04700 SM01091 Transporter associated domain QR42_04710 SM01091 Transporter associated domain QR42_04780 SM00382 ATPases associated with a variety of cellular activities QR42_04785 SM00382 ATPases associated with a variety of cellular activities QR42_04805 SM00382 ATPases associated with a variety of cellular activities QR42_04845 SM00729 Elongator protein 3, MiaB family, Radical SAM QR42_04895 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. QR42_04930 SM00347 helix_turn_helix multiple antibiotic resistance protein QR42_04960 SM00382 ATPases associated with a variety of cellular activities QR42_05030 SM00849 Metallo-beta-lactamase superfamily QR42_05060 SM00855 Phosphoglycerate mutase family QR42_05065 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QR42_05080 SM00914 QR42_05080 QR42_05095 SM00345 helix_turn_helix gluconate operon transcriptional repressor QR42_05260 SM00342 helix_turn_helix, arabinose operon control protein QR42_05300 SM01006 Siderophore biosynthesis protein domain QR42_05320 SM01018 B12 binding domain QR42_05335 SM00316 Ribosomal protein S1-like RNA-binding domain QR42_05345 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QR42_05345 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QR42_05400 SM00859 Semialdehyde dehydrogenase, NAD binding domain QR42_05420 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain QR42_05425 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain QR42_05480 SM00825 Beta-ketoacyl synthase QR42_05490 SM00382 ATPases associated with a variety of cellular activities QR42_05495 SM00382 ATPases associated with a variety of cellular activities QR42_05540 SM00382 ATPases associated with a variety of cellular activities QR42_05545 SM00382 ATPases associated with a variety of cellular activities QR42_05575 SM00155 Phospholipase D. Active site motifs. QR42_05610 SM01118 QR42_05610 QR42_05620 SM00954 Region found in RelA / SpoT proteins QR42_05780 SM00829 Enoylreductase QR42_05785 SM00347 helix_turn_helix multiple antibiotic resistance protein QR42_05795 SM00347 helix_turn_helix multiple antibiotic resistance protein QR42_05840 SM01059 Chloramphenicol acetyltransferase QR42_05845 SM00028 Tetratricopeptide repeats QR42_05865 SM00860 SMI1 / KNR4 family QR42_05905 SM00028 Tetratricopeptide repeats QR42_05915 SM00871 Bacterial transcription activator, effector binding domain QR42_05930 SM01005 Alanine racemase, C-terminal domain QR42_05935 SM00829 Enoylreductase QR42_05945 SM00612 QR42_05945 QR42_05970 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QR42_05990 SM00257 Lysin motif QR42_05990 SM00644 QR42_05990 QR42_06015 SM01022 QR42_06015 QR42_06065 SM00829 Enoylreductase QR42_06075 SM00861 Transketolase, pyrimidine binding domain QR42_06080 SM01059 Chloramphenicol acetyltransferase QR42_06120 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. QR42_06145 SM00382 ATPases associated with a variety of cellular activities QR42_06160 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain QR42_06170 SM00382 ATPases associated with a variety of cellular activities QR42_06205 SM00342 helix_turn_helix, arabinose operon control protein QR42_06230 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase QR42_06240 SM00028 Tetratricopeptide repeats QR42_06255 SM00347 helix_turn_helix multiple antibiotic resistance protein QR42_06285 SM00530 Helix-turn-helix XRE-family like proteins QR42_06290 SM00448 cheY-homologous receiver domain QR42_06290 SM00862 Transcriptional regulatory protein, C terminal QR42_06295 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QR42_06295 SM00387 Histidine kinase-like ATPases QR42_06295 SM00388 His Kinase A (phosphoacceptor) domain QR42_06310 SM00116 Domain in cystathionine beta-synthase and other proteins. QR42_06310 SM00924 MgtE intracellular N domain QR42_06330 SM00422 helix_turn_helix, mercury resistance QR42_06340 SM00347 helix_turn_helix multiple antibiotic resistance protein QR42_06345 SM00052 Putative diguanylate phosphodiesterase QR42_06345 SM00267 diguanylate cyclase QR42_06400 SM00091 PAS domain QR42_06400 SM00387 Histidine kinase-like ATPases QR42_06400 SM00388 His Kinase A (phosphoacceptor) domain QR42_06435 SM01007 Class II Aldolase and Adducin N-terminal domain QR42_06450 SM00387 Histidine kinase-like ATPases QR42_06450 SM00388 His Kinase A (phosphoacceptor) domain QR42_06455 SM00347 helix_turn_helix multiple antibiotic resistance protein QR42_06470 SM00382 ATPases associated with a variety of cellular activities QR42_06470 SM01086 C-terminal, D2-small domain, of ClpB protein QR42_06550 SM00354 helix_turn _helix lactose operon repressor QR42_06555 SM01061 CAT RNA binding domain QR42_06585 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QR42_06585 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QR42_06610 SM00091 PAS domain QR42_06610 SM00387 Histidine kinase-like ATPases QR42_06610 SM00388 His Kinase A (phosphoacceptor) domain QR42_06635 SM00260 Two component signalling adaptor domain QR42_06635 SM00448 cheY-homologous receiver domain QR42_06645 SM00342 helix_turn_helix, arabinose operon control protein QR42_06665 SM00257 Lysin motif QR42_06680 SM00052 Putative diguanylate phosphodiesterase QR42_06780 SM00852 Probable molybdopterin binding domain QR42_06815 SM00382 ATPases associated with a variety of cellular activities QR42_06825 SM00420 helix_turn_helix, Deoxyribose operon repressor QR42_06825 SM01134 QR42_06825 QR42_06850 SM00382 ATPases associated with a variety of cellular activities QR42_06865 SM00966 SpoVT / AbrB like domain QR42_06870 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) QR42_06870 SM00091 PAS domain QR42_06870 SM00387 Histidine kinase-like ATPases QR42_06870 SM00388 His Kinase A (phosphoacceptor) domain QR42_06890 SM00849 Metallo-beta-lactamase superfamily QR42_06925 SM00861 Transketolase, pyrimidine binding domain QR42_07005 SM00838 Elongation factor G C-terminus QR42_07025 SM00670 Large family of predicted nucleotide-binding domains QR42_07050 SM00878 Biotin carboxylase C-terminal domain QR42_07100 SM00116 Domain in cystathionine beta-synthase and other proteins. QR42_07175 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains QR42_07210 SM00740 QR42_07210 QR42_07215 SM00740 QR42_07215 QR42_07270 SM00842 Cell division protein FtsA QR42_07275 SM00864 Tubulin/FtsZ family, GTPase domain QR42_07275 SM00865 Tubulin/FtsZ family, C-terminal domain QR42_07305 SM00858 QR42_07305 QR42_07330 SM00382 ATPases associated with a variety of cellular activities QR42_07360 SM00363 S4 RNA-binding domain QR42_07385 SM00363 S4 RNA-binding domain QR42_07410 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain QR42_07415 SM00851 MGS-like domain QR42_07415 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain QR42_07415 SM01209 QR42_07415 QR42_07430 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family QR42_07480 SM00831 Cation transporter/ATPase, N-terminus QR42_07495 SM00072 Guanylate kinase homologues. QR42_07500 SM01409 QR42_07500 QR42_07510 SM00487 DEAD-like helicases superfamily QR42_07510 SM00490 helicase superfamily c-terminal domain QR42_07535 SM00331 Sigma factor PP2C-like phosphatases QR42_07535 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain QR42_07540 SM00220 Serine/Threonine protein kinases, catalytic domain QR42_07540 SM00740 QR42_07540 QR42_07555 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain QR42_07575 SM01120 QR42_07575 QR42_07575 SM01121 QR42_07575 QR42_07590 SM00487 DEAD-like helicases superfamily QR42_07590 SM00490 helicase superfamily c-terminal domain QR42_07605 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. QR42_07610 SM00822 QR42_07610 QR42_07620 SM00358 Double-stranded RNA binding motif QR42_07620 SM00535 Ribonuclease III family QR42_07625 SM00968 SMC proteins Flexible Hinge Domain QR42_07630 SM00382 ATPases associated with a variety of cellular activities QR42_07630 SM00962 SRP54-type protein, GTPase domain QR42_07630 SM00963 SRP54-type protein, helical bundle domain QR42_07640 SM00382 ATPases associated with a variety of cellular activities QR42_07640 SM00962 SRP54-type protein, GTPase domain QR42_07640 SM00963 SRP54-type protein, helical bundle domain QR42_07700 SM00881 CoA binding domain QR42_07710 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain QR42_07710 SM00437 Bacterial DNA topoisomerase I DNA-binding domain QR42_07710 SM00493 QR42_07710 QR42_07730 SM00382 ATPases associated with a variety of cellular activities QR42_07730 SM01086 C-terminal, D2-small domain, of ClpB protein QR42_07770 SM00382 ATPases associated with a variety of cellular activities QR42_07820 SM00448 cheY-homologous receiver domain QR42_07855 SM00962 SRP54-type protein, GTPase domain QR42_07865 SM00448 cheY-homologous receiver domain QR42_07870 SM00073 Histidine Phosphotransfer domain QR42_07870 SM00260 Two component signalling adaptor domain QR42_07870 SM00387 Histidine kinase-like ATPases QR42_07870 SM01231 QR42_07870 QR42_07875 SM00260 Two component signalling adaptor domain QR42_07935 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. QR42_07945 SM00479 QR42_07945 QR42_07945 SM00481 DNA polymerase alpha chain like domain QR42_07950 SM01067 Cellulose binding domain QR42_07960 SM00633 Glycosyl hydrolase family 10 QR42_07980 SM00382 ATPases associated with a variety of cellular activities QR42_08030 SM00316 Ribosomal protein S1-like RNA-binding domain QR42_08030 SM00322 K homology RNA-binding domain QR42_08065 SM00904 Riboflavin kinase QR42_08070 SM01387 QR42_08070 QR42_08075 SM00316 Ribosomal protein S1-like RNA-binding domain QR42_08075 SM00322 K homology RNA-binding domain QR42_08110 SM00859 Semialdehyde dehydrogenase, NAD binding domain QR42_08120 SM01130 QR42_08120 QR42_08125 SM00849 Metallo-beta-lactamase superfamily QR42_08140 SM00382 ATPases associated with a variety of cellular activities QR42_08140 SM00843 QR42_08140 QR42_08145 SM00345 helix_turn_helix gluconate operon transcriptional repressor QR42_08145 SM00866 QR42_08145 QR42_08170 SM00347 helix_turn_helix multiple antibiotic resistance protein QR42_08195 SM00530 Helix-turn-helix XRE-family like proteins QR42_08205 SM00852 Probable molybdopterin binding domain QR42_08210 SM00382 ATPases associated with a variety of cellular activities QR42_08220 SM00322 K homology RNA-binding domain QR42_08220 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. QR42_08240 SM00829 Enoylreductase QR42_08250 SM00729 Elongator protein 3, MiaB family, Radical SAM QR42_08265 SM00533 DNA-binding domain of DNA mismatch repair MUTS family QR42_08265 SM00534 ATPase domain of DNA mismatch repair MUTS family QR42_08270 SM00853 MutL C terminal dimerisation domain QR42_08270 SM01340 QR42_08270 QR42_08290 SM01058 CarD-like/TRCF domain QR42_08300 SM00028 Tetratricopeptide repeats QR42_08380 SM00646 QR42_08380 QR42_08385 SM00382 ATPases associated with a variety of cellular activities QR42_08400 SM00422 helix_turn_helix, mercury resistance QR42_08405 SM01230 QR42_08405 QR42_08410 SM00891 ERCC4 domain QR42_08490 SM00506 Appr-1"-p processing enzyme QR42_08510 SM00028 Tetratricopeptide repeats QR42_08525 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen QR42_08595 SM00020 Trypsin-like serine protease QR42_08625 SM00257 Lysin motif QR42_08630 SM00857 Resolvase, N terminal domain QR42_08640 SM00861 Transketolase, pyrimidine binding domain QR42_08730 SM01207 QR42_08730 QR42_08735 SM00881 CoA binding domain QR42_08740 SM00387 Histidine kinase-like ATPases QR42_08740 SM00433 TopoisomeraseII QR42_08745 SM00434 DNA Topoisomerase IV QR42_08810 SM00347 helix_turn_helix multiple antibiotic resistance protein QR42_08855 SM00422 helix_turn_helix, mercury resistance QR42_08870 SM01061 CAT RNA binding domain QR42_08880 SM00387 Histidine kinase-like ATPases QR42_08880 SM00388 His Kinase A (phosphoacceptor) domain QR42_08885 SM00448 cheY-homologous receiver domain QR42_08885 SM00862 Transcriptional regulatory protein, C terminal QR42_08895 SM00606 Cellulose Binding Domain Type IV QR42_08925 SM00354 helix_turn _helix lactose operon repressor QR42_08985 SM00347 helix_turn_helix multiple antibiotic resistance protein QR42_09020 SM00155 Phospholipase D. Active site motifs. QR42_09030 SM00100 Cyclic nucleotide-monophosphate binding domain QR42_09085 SM00878 Biotin carboxylase C-terminal domain QR42_09110 SM00420 helix_turn_helix, Deoxyribose operon repressor QR42_09110 SM01134 QR42_09110 QR42_09255 SM00382 ATPases associated with a variety of cellular activities QR42_09260 SM00382 ATPases associated with a variety of cellular activities QR42_09265 SM00422 helix_turn_helix, mercury resistance QR42_09280 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase QR42_09295 SM00926 Molybdopterin oxidoreductase Fe4S4 domain QR42_09360 SM00849 Metallo-beta-lactamase superfamily QR42_09365 SM00871 Bacterial transcription activator, effector binding domain QR42_09380 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor QR42_09420 SM00257 Lysin motif QR42_09425 SM00341 Helicase and RNase D C-terminal QR42_09425 SM00487 DEAD-like helicases superfamily QR42_09425 SM00490 helicase superfamily c-terminal domain QR42_09425 SM00956 QR42_09425 QR42_09475 SM00861 Transketolase, pyrimidine binding domain QR42_09480 SM00327 von Willebrand factor (vWF) type A domain QR42_09485 SM00382 ATPases associated with a variety of cellular activities QR42_09495 SM00257 Lysin motif QR42_09565 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. QR42_09565 SM00245 tail specific protease QR42_09595 SM00014 Acid phosphatase homologues QR42_09620 SM00091 PAS domain QR42_09620 SM00382 ATPases associated with a variety of cellular activities QR42_09670 SM00347 helix_turn_helix multiple antibiotic resistance protein QR42_09770 SM00567 E-Z type HEAT repeats QR42_09770 SM00932 Scaffold protein Nfu/NifU N terminal QR42_09775 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. QR42_09805 SM00357 Cold shock protein domain QR42_09840 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs QR42_09840 SM00475 5'-3' exonuclease QR42_09885 SM00491 QR42_09885 QR42_09895 SM00981 QR42_09895 QR42_09915 SM00487 DEAD-like helicases superfamily QR42_09915 SM00490 helicase superfamily c-terminal domain QR42_09975 SM00478 endonuclease III QR42_09975 SM00525 QR42_09975 QR42_09995 SM00479 QR42_09995 QR42_09995 SM00491 QR42_09995 QR42_10035 SM00851 MGS-like domain QR42_10085 SM00914 QR42_10085 QR42_10090 SM00028 Tetratricopeptide repeats QR42_10155 SM00138 Methyltransferase, chemotaxis proteins QR42_10160 SM00562 QR42_10160 QR42_10190 SM00411 bacterial (prokaryotic) histone like domain QR42_10235 SM01240 QR42_10235 QR42_10240 SM00316 Ribosomal protein S1-like RNA-binding domain QR42_10280 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase QR42_10300 SM00257 Lysin motif QR42_10310 SM00487 DEAD-like helicases superfamily QR42_10310 SM00490 helicase superfamily c-terminal domain QR42_10335 SM00257 Lysin motif QR42_10350 SM00091 PAS domain QR42_10350 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QR42_10350 SM00387 Histidine kinase-like ATPases QR42_10350 SM00388 His Kinase A (phosphoacceptor) domain QR42_10355 SM00448 cheY-homologous receiver domain QR42_10355 SM00862 Transcriptional regulatory protein, C terminal QR42_10375 SM00363 S4 RNA-binding domain QR42_10510 SM00387 Histidine kinase-like ATPases QR42_10520 SM00936 Penicillin-binding protein 5, C-terminal domain QR42_10600 SM00028 Tetratricopeptide repeats QR42_10665 SM00849 Metallo-beta-lactamase superfamily QR42_10700 SM00849 Metallo-beta-lactamase superfamily QR42_10710 SM00345 helix_turn_helix gluconate operon transcriptional repressor QR42_10710 SM00866 QR42_10710 QR42_10745 SM01350 QR42_10745 QR42_10770 SM00260 Two component signalling adaptor domain QR42_10800 SM00382 ATPases associated with a variety of cellular activities QR42_10810 SM00062 Bacterial periplasmic substrate-binding proteins QR42_10810 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. QR42_10820 SM00046 Diacylglycerol kinase catalytic domain (presumed) QR42_10835 SM00861 Transketolase, pyrimidine binding domain QR42_10855 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase QR42_10865 SM00091 PAS domain QR42_10865 SM00382 ATPases associated with a variety of cellular activities QR42_10890 SM00448 cheY-homologous receiver domain QR42_10895 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. QR42_10910 SM00363 S4 RNA-binding domain QR42_10915 SM00861 Transketolase, pyrimidine binding domain QR42_10950 SM00878 Biotin carboxylase C-terminal domain QR42_10995 SM00382 ATPases associated with a variety of cellular activities QR42_11005 SM00841 Elongation factor P, C-terminal QR42_11005 SM01185 QR42_11005 QR42_11040 SM00529 Helix-turn-helix diphteria tox regulatory element QR42_11050 SM00450 Rhodanese Homology Domain QR42_11070 SM00487 DEAD-like helicases superfamily QR42_11070 SM00490 helicase superfamily c-terminal domain QR42_11080 SM00530 Helix-turn-helix XRE-family like proteins QR42_11140 SM00382 ATPases associated with a variety of cellular activities QR42_11165 SM00849 Metallo-beta-lactamase superfamily QR42_11185 SM00631 QR42_11185 QR42_11205 SM00028 Tetratricopeptide repeats QR42_11235 SM00382 ATPases associated with a variety of cellular activities QR42_11240 SM00382 ATPases associated with a variety of cellular activities QR42_11325 SM00382 ATPases associated with a variety of cellular activities QR42_11340 SM00518 AP endonuclease family 2 QR42_11345 SM00487 DEAD-like helicases superfamily QR42_11345 SM00490 helicase superfamily c-terminal domain QR42_11380 SM00400 zinc finger QR42_11380 SM00493 QR42_11380 QR42_11395 SM00116 Domain in cystathionine beta-synthase and other proteins. QR42_11435 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. QR42_11485 SM00729 Elongator protein 3, MiaB family, Radical SAM QR42_11500 SM00271 DnaJ molecular chaperone homology domain QR42_11520 SM00729 Elongator protein 3, MiaB family, Radical SAM QR42_11525 SM00838 Elongation factor G C-terminus QR42_11560 SM00849 Metallo-beta-lactamase superfamily QR42_11570 SM00278 Helix-hairpin-helix DNA-binding motif class 1 QR42_11590 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. QR42_11600 SM01103 QR42_11600 QR42_11635 SM00028 Tetratricopeptide repeats QR42_11705 SM01007 Class II Aldolase and Adducin N-terminal domain QR42_11715 SM00345 helix_turn_helix gluconate operon transcriptional repressor QR42_11725 SM00347 helix_turn_helix multiple antibiotic resistance protein QR42_11740 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family QR42_11900 SM00382 ATPases associated with a variety of cellular activities QR42_11905 SM00062 Bacterial periplasmic substrate-binding proteins QR42_11925 SM00829 Enoylreductase QR42_12050 SM00732 Likely ribonuclease with RNase H fold. QR42_12060 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain QR42_12070 SM00382 ATPases associated with a variety of cellular activities QR42_12075 SM00062 Bacterial periplasmic substrate-binding proteins QR42_12075 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. QR42_12105 SM00028 Tetratricopeptide repeats QR42_12125 SM00382 ATPases associated with a variety of cellular activities QR42_12145 SM00287 Bacterial SH3 domain homologues QR42_12145 SM00646 QR42_12145 QR42_12155 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. QR42_12155 SM00954 Region found in RelA / SpoT proteins QR42_12205 SM01323 QR42_12205 QR42_12225 SM00382 ATPases associated with a variety of cellular activities QR42_12230 SM00278 Helix-hairpin-helix DNA-binding motif class 1 QR42_12265 SM00257 Lysin motif QR42_12310 SM01317 QR42_12310 QR42_12405 SM00257 Lysin motif QR42_12415 SM01004 Delta-aminolevulinic acid dehydratase QR42_12450 SM00382 ATPases associated with a variety of cellular activities QR42_12450 SM00464 Found in ATP-dependent protease La (LON) QR42_12455 SM00382 ATPases associated with a variety of cellular activities QR42_12460 SM00382 ATPases associated with a variety of cellular activities QR42_12460 SM00994 ClpX C4-type zinc finger QR42_12460 SM01086 C-terminal, D2-small domain, of ClpB protein QR42_12485 SM01329 QR42_12485 QR42_12490 SM00917 LeuA allosteric (dimerisation) domain QR42_12545 SM00612 QR42_12545 QR42_12580 SM00909 Sporulation and spore germination QR42_12590 SM00347 helix_turn_helix multiple antibiotic resistance protein QR42_12595 SM00421 helix_turn_helix, Lux Regulon QR42_12650 SM00465 GIY-YIG type nucleases (URI domain) QR42_12660 SM00813 Alpha-L-arabinofuranosidase C-terminus QR42_12665 SM00893 Electron transfer flavoprotein domain QR42_12670 SM00893 Electron transfer flavoprotein domain QR42_12700 SM00463 Small MutS-related domain QR42_12700 SM00533 DNA-binding domain of DNA mismatch repair MUTS family QR42_12700 SM00534 ATPase domain of DNA mismatch repair MUTS family QR42_12705 SM00278 Helix-hairpin-helix DNA-binding motif class 1 QR42_12705 SM00481 DNA polymerase alpha chain like domain QR42_12705 SM00483 DNA polymerase X family QR42_12725 SM00873 B3/4 domain QR42_12725 SM00874 tRNA synthetase B5 domain QR42_12725 SM00896 Ferredoxin-fold anticodon binding domain QR42_12735 SM00967 RNA 2'-O ribose methyltransferase substrate binding QR42_12790 SM00448 cheY-homologous receiver domain QR42_12790 SM00850 LytTr DNA-binding domain QR42_12795 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. QR42_12795 SM00387 Histidine kinase-like ATPases QR42_12805 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) QR42_12805 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QR42_12810 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain QR42_12825 SM00382 ATPases associated with a variety of cellular activities QR42_12850 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain QR42_12865 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain QR42_12865 SM01232 QR42_12865 QR42_12870 SM00278 Helix-hairpin-helix DNA-binding motif class 1 QR42_12870 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs QR42_12870 SM00474 3'-5' exonuclease QR42_12870 SM00475 5'-3' exonuclease QR42_12870 SM00482 DNA polymerase A domain QR42_12875 SM00387 Histidine kinase-like ATPases QR42_12875 SM00388 His Kinase A (phosphoacceptor) domain QR42_12880 SM00448 cheY-homologous receiver domain QR42_12880 SM00862 Transcriptional regulatory protein, C terminal QR42_12890 SM01329 QR42_12890 QR42_12935 SM00919 Malic enzyme, NAD binding domain QR42_12935 SM01274 QR42_12935 QR42_12940 SM00481 DNA polymerase alpha chain like domain QR42_12970 SM00116 Domain in cystathionine beta-synthase and other proteins. QR42_12975 SM00849 Metallo-beta-lactamase superfamily QR42_13000 SM00852 Probable molybdopterin binding domain QR42_13045 SM00487 DEAD-like helicases superfamily QR42_13045 SM00490 helicase superfamily c-terminal domain QR42_13060 SM00421 helix_turn_helix, Lux Regulon QR42_13060 SM00448 cheY-homologous receiver domain QR42_13070 SM00448 cheY-homologous receiver domain QR42_13070 SM00862 Transcriptional regulatory protein, C terminal QR42_13075 SM00387 Histidine kinase-like ATPases QR42_13080 SM00382 ATPases associated with a variety of cellular activities QR42_13100 SM00347 helix_turn_helix multiple antibiotic resistance protein QR42_13125 SM00981 QR42_13125 QR42_13160 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. QR42_13165 SM00363 S4 RNA-binding domain QR42_13165 SM01390 QR42_13165 QR42_13190 SM00363 S4 RNA-binding domain QR42_13205 SM00116 Domain in cystathionine beta-synthase and other proteins. QR42_13215 SM00354 helix_turn _helix lactose operon repressor QR42_13220 SM00830 Chorismate mutase type II QR42_13245 SM00382 ATPases associated with a variety of cellular activities QR42_13245 SM00843 QR42_13245 QR42_13285 SM00919 Malic enzyme, NAD binding domain QR42_13285 SM01274 QR42_13285 QR42_13290 SM00849 Metallo-beta-lactamase superfamily QR42_13350 SM00420 helix_turn_helix, Deoxyribose operon repressor QR42_13355 SM00363 S4 RNA-binding domain QR42_13390 SM00450 Rhodanese Homology Domain QR42_13420 SM00342 helix_turn_helix, arabinose operon control protein QR42_13470 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) QR42_13470 SM00091 PAS domain QR42_13485 SM00382 ATPases associated with a variety of cellular activities QR42_13495 SM00382 ATPases associated with a variety of cellular activities QR42_13500 SM00345 helix_turn_helix gluconate operon transcriptional repressor QR42_13535 SM00729 Elongator protein 3, MiaB family, Radical SAM QR42_13595 SM00563 Phosphate acyltransferases QR42_13610 SM00382 ATPases associated with a variety of cellular activities QR42_13670 SM01234 QR42_13670 QR42_13675 SM00947 Carbonic anhydrase QR42_13710 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain QR42_13890 SM00244 prohibitin homologues QR42_13930 SM00644 QR42_13930 QR42_14005 SM00257 Lysin motif QR42_14085 SM00421 helix_turn_helix, Lux Regulon QR42_14105 SM00530 Helix-turn-helix XRE-family like proteins QR42_14110 SM00530 Helix-turn-helix XRE-family like proteins QR42_14120 SM00729 Elongator protein 3, MiaB family, Radical SAM QR42_14120 SM00876 Biotin and Thiamin Synthesis associated domain QR42_14155 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QR42_14155 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QR42_14155 SM00319 Homologues of the ligand binding domain of Tar QR42_14160 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QR42_14160 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QR42_14165 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QR42_14165 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QR42_14165 SM00319 Homologues of the ligand binding domain of Tar QR42_14170 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QR42_14170 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QR42_14170 SM00319 Homologues of the ligand binding domain of Tar QR42_14195 SM01091 Transporter associated domain QR42_14245 SM00316 Ribosomal protein S1-like RNA-binding domain QR42_14255 SM00344 helix_turn_helix ASNC type QR42_14275 SM00387 Histidine kinase-like ATPases QR42_14275 SM00388 His Kinase A (phosphoacceptor) domain QR42_14280 SM01298 QR42_14280 QR42_14285 SM00479 QR42_14285 QR42_14310 SM00387 Histidine kinase-like ATPases QR42_14315 SM00448 cheY-homologous receiver domain QR42_14325 SM00382 ATPases associated with a variety of cellular activities QR42_14390 SM00421 helix_turn_helix, Lux Regulon QR42_14390 SM00448 cheY-homologous receiver domain QR42_14395 SM00387 Histidine kinase-like ATPases QR42_14420 SM00052 Putative diguanylate phosphodiesterase QR42_14470 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. QR42_14515 SM01002 Alanine dehydrogenase/PNT, C-terminal domain QR42_14515 SM01003 Alanine dehydrogenase/PNT, N-terminal domain QR42_14570 SM00422 helix_turn_helix, mercury resistance QR42_14665 SM00729 Elongator protein 3, MiaB family, Radical SAM QR42_14700 SM00835 Cupin QR42_14755 SM00388 His Kinase A (phosphoacceptor) domain QR42_14760 SM00448 cheY-homologous receiver domain QR42_14760 SM00862 Transcriptional regulatory protein, C terminal QR42_14835 SM00382 ATPases associated with a variety of cellular activities QR42_14855 SM00382 ATPases associated with a variety of cellular activities QR42_14855 SM00930 QR42_14855 QR42_14870 SM00493 QR42_14870 QR42_14920 SM00382 ATPases associated with a variety of cellular activities QR42_14935 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. QR42_14940 SM00448 cheY-homologous receiver domain QR42_14940 SM00862 Transcriptional regulatory protein, C terminal QR42_14945 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QR42_14945 SM00387 Histidine kinase-like ATPases QR42_14945 SM00388 His Kinase A (phosphoacceptor) domain QR42_14980 SM00421 helix_turn_helix, Lux Regulon QR42_14980 SM00448 cheY-homologous receiver domain QR42_14985 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QR42_14985 SM00387 Histidine kinase-like ATPases QR42_15010 SM00342 helix_turn_helix, arabinose operon control protein QR42_15040 SM00382 ATPases associated with a variety of cellular activities QR42_15055 SM00710 Parallel beta-helix repeats QR42_15060 SM00858 QR42_15060 QR42_15070 SM00354 helix_turn _helix lactose operon repressor QR42_15080 SM00387 Histidine kinase-like ATPases QR42_15080 SM00388 His Kinase A (phosphoacceptor) domain QR42_15085 SM00448 cheY-homologous receiver domain QR42_15085 SM00862 Transcriptional regulatory protein, C terminal QR42_15090 SM00382 ATPases associated with a variety of cellular activities QR42_15120 SM00347 helix_turn_helix multiple antibiotic resistance protein QR42_15180 SM00382 ATPases associated with a variety of cellular activities QR42_15205 SM00448 cheY-homologous receiver domain QR42_15210 SM00387 Histidine kinase-like ATPases QR42_15245 SM00267 diguanylate cyclase QR42_15280 SM00316 Ribosomal protein S1-like RNA-binding domain QR42_15280 SM00357 Cold shock protein domain QR42_15280 SM00955 QR42_15280 QR42_15295 SM00966 SpoVT / AbrB like domain QR42_15300 SM00530 Helix-turn-helix XRE-family like proteins QR42_15305 SM00530 Helix-turn-helix XRE-family like proteins QR42_15310 SM00530 Helix-turn-helix XRE-family like proteins QR42_15335 SM00116 Domain in cystathionine beta-synthase and other proteins. QR42_15335 SM00382 ATPases associated with a variety of cellular activities QR42_15375 SM00382 ATPases associated with a variety of cellular activities QR42_15385 SM01192 QR42_15385 QR42_15385 SM01193 QR42_15385 QR42_15405 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain QR42_15430 SM00091 PAS domain QR42_15430 SM00382 ATPases associated with a variety of cellular activities QR42_15435 SM00345 helix_turn_helix gluconate operon transcriptional repressor QR42_15435 SM00895 QR42_15435 QR42_15455 SM00382 ATPases associated with a variety of cellular activities QR42_15460 SM00382 ATPases associated with a variety of cellular activities QR42_15545 SM00530 Helix-turn-helix XRE-family like proteins QR42_15575 SM00382 ATPases associated with a variety of cellular activities QR42_15580 SM00382 ATPases associated with a variety of cellular activities QR42_15585 SM00382 ATPases associated with a variety of cellular activities QR42_15650 SM00947 Carbonic anhydrase QR42_15705 SM00028 Tetratricopeptide repeats QR42_15805 SM00345 helix_turn_helix gluconate operon transcriptional repressor QR42_15805 SM00866 QR42_15805 QR42_15840 SM00382 ATPases associated with a variety of cellular activities QR42_15845 SM00487 DEAD-like helicases superfamily QR42_15845 SM00490 helicase superfamily c-terminal domain QR42_15880 SM00448 cheY-homologous receiver domain QR42_15880 SM00862 Transcriptional regulatory protein, C terminal QR42_15885 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QR42_15885 SM00387 Histidine kinase-like ATPases QR42_15885 SM00388 His Kinase A (phosphoacceptor) domain QR42_15915 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. QR42_15925 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. QR42_15925 SM00245 tail specific protease QR42_15945 SM00382 ATPases associated with a variety of cellular activities QR42_15970 SM00937 QR42_15970 QR42_15975 SM00957 SecA DEAD-like domain QR42_15975 SM00958 SecA preprotein cross-linking domain QR42_15985 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QR42_15985 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QR42_16065 SM00487 DEAD-like helicases superfamily QR42_16065 SM00490 helicase superfamily c-terminal domain QR42_16075 SM00421 helix_turn_helix, Lux Regulon QR42_16075 SM00448 cheY-homologous receiver domain QR42_16080 SM00387 Histidine kinase-like ATPases QR42_16125 SM00984 UDP binding domain QR42_16150 SM00646 QR42_16150 QR42_16180 SM00382 ATPases associated with a variety of cellular activities QR42_16190 SM00984 UDP binding domain QR42_16250 SM00047 Lysozyme subfamily 2 QR42_16250 SM00287 Bacterial SH3 domain homologues QR42_16280 SM00342 helix_turn_helix, arabinose operon control protein QR42_16280 SM00448 cheY-homologous receiver domain QR42_16285 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QR42_16285 SM00387 Histidine kinase-like ATPases QR42_16310 SM00354 helix_turn _helix lactose operon repressor QR42_16365 SM00854 Bacterial capsule synthesis protein PGA_cap QR42_16395 SM00354 helix_turn _helix lactose operon repressor QR42_16410 SM00382 ATPases associated with a variety of cellular activities QR42_16425 SM00903 Flavin reductase like domain QR42_16445 SM00344 helix_turn_helix ASNC type QR42_16460 SM00984 UDP binding domain QR42_16470 SM00487 DEAD-like helicases superfamily QR42_16470 SM00490 helicase superfamily c-terminal domain QR42_16475 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) QR42_16475 SM00091 PAS domain QR42_16505 SM00028 Tetratricopeptide repeats QR42_16530 SM00347 helix_turn_helix multiple antibiotic resistance protein QR42_16540 SM00014 Acid phosphatase homologues QR42_16550 SM00062 Bacterial periplasmic substrate-binding proteins QR42_16550 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. QR42_16560 SM00382 ATPases associated with a variety of cellular activities QR42_16570 SM00938 Nitrogen regulatory protein P-II QR42_16595 SM00382 ATPases associated with a variety of cellular activities QR42_16620 SM00833 Cobalamin synthesis protein cobW C-terminal domain QR42_16630 SM00729 Elongator protein 3, MiaB family, Radical SAM QR42_16650 SM00327 von Willebrand factor (vWF) type A domain QR42_16655 SM00327 von Willebrand factor (vWF) type A domain QR42_16690 SM00382 ATPases associated with a variety of cellular activities QR42_16755 SM00226 Low molecular weight phosphatase family QR42_16790 SM00937 QR42_16790 QR42_16805 SM00919 Malic enzyme, NAD binding domain QR42_16805 SM01274 QR42_16805 QR42_16820 SM00357 Cold shock protein domain QR42_16820 SM00382 ATPases associated with a variety of cellular activities QR42_16820 SM00959 Rho termination factor, N-terminal domain QR42_16845 SM00448 cheY-homologous receiver domain QR42_16895 SM00155 Phospholipase D. Active site motifs. QR42_16920 SM00382 ATPases associated with a variety of cellular activities QR42_16925 SM00155 Phospholipase D. Active site motifs. QR42_16935 SM00836 DALR anticodon binding domain QR42_16935 SM01016 Arginyl tRNA synthetase N terminal dom QR42_17025 SM00062 Bacterial periplasmic substrate-binding proteins QR42_17035 SM00382 ATPases associated with a variety of cellular activities QR42_17045 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. QR42_17070 SM00028 Tetratricopeptide repeats QR42_17080 SM00860 SMI1 / KNR4 family QR42_17150 SM00344 helix_turn_helix ASNC type QR42_17220 SM00858 QR42_17220 QR42_17255 SM00835 Cupin QR42_17280 SM00986 Uracil DNA glycosylase superfamily QR42_17280 SM00987 UreE urease accessory protein, C-terminal domain QR42_17320 SM00640 Glycosyl hydrolases family 32 QR42_17330 SM01061 CAT RNA binding domain QR42_17405 SM00342 helix_turn_helix, arabinose operon control protein QR42_17480 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase QR42_17490 SM00382 ATPases associated with a variety of cellular activities QR42_17500 SM00062 Bacterial periplasmic substrate-binding proteins QR42_17500 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. QR42_17510 SM00954 Region found in RelA / SpoT proteins QR42_17520 SM00382 ATPases associated with a variety of cellular activities QR42_17530 SM00710 Parallel beta-helix repeats QR42_17585 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase QR42_17605 SM00656 QR42_17605 QR42_17610 SM00382 ATPases associated with a variety of cellular activities QR42_17615 SM00382 ATPases associated with a variety of cellular activities QR42_17630 SM00382 ATPases associated with a variety of cellular activities QR42_17650 SM00382 ATPases associated with a variety of cellular activities QR42_17665 SM00725 NEAr Transporter domain QR42_17670 SM00725 NEAr Transporter domain QR42_17675 SM00725 NEAr Transporter domain QR42_17765 SM00870 QR42_17765 QR42_17770 SM00530 Helix-turn-helix XRE-family like proteins QR42_17775 SM00530 Helix-turn-helix XRE-family like proteins QR42_17850 SM01061 CAT RNA binding domain QR42_17860 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QR42_17870 SM00382 ATPases associated with a variety of cellular activities QR42_17920 SM00347 helix_turn_helix multiple antibiotic resistance protein QR42_17920 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor QR42_17925 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain QR42_17935 SM01133 QR42_17935 QR42_17970 SM00421 helix_turn_helix, Lux Regulon QR42_17980 SM00422 helix_turn_helix, mercury resistance QR42_17990 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) QR42_17990 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QR42_18055 SM00354 helix_turn _helix lactose operon repressor QR42_18100 SM00382 ATPases associated with a variety of cellular activities QR42_18145 SM00382 ATPases associated with a variety of cellular activities QR42_18155 SM00028 Tetratricopeptide repeats QR42_18160 SM01061 CAT RNA binding domain QR42_18200 SM00530 Helix-turn-helix XRE-family like proteins QR42_18215 SM00354 helix_turn _helix lactose operon repressor QR42_18265 SM00345 helix_turn_helix gluconate operon transcriptional repressor QR42_18265 SM00866 QR42_18265 QR42_18305 SM00849 Metallo-beta-lactamase superfamily QR42_18315 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor QR42_18340 SM00382 ATPases associated with a variety of cellular activities QR42_18360 SM00382 ATPases associated with a variety of cellular activities QR42_18380 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. QR42_18385 SM00849 Metallo-beta-lactamase superfamily QR42_18400 SM00091 PAS domain QR42_18400 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QR42_18400 SM00387 Histidine kinase-like ATPases QR42_18400 SM00388 His Kinase A (phosphoacceptor) domain QR42_18405 SM00448 cheY-homologous receiver domain QR42_18405 SM00862 Transcriptional regulatory protein, C terminal QR42_18445 SM00788 Adenylosuccinate synthetase QR42_18455 SM00382 ATPases associated with a variety of cellular activities QR42_18485 SM00822 QR42_18485 QR42_18505 SM00823 Phosphopantetheine attachment site QR42_18510 SM00923 MbtH-like protein QR42_18515 SM00342 helix_turn_helix, arabinose operon control protein QR42_18540 SM00267 diguanylate cyclase QR42_18550 SM01131 QR42_18550 QR42_18570 SM01060 QR42_18570 QR42_18595 SM00382 ATPases associated with a variety of cellular activities QR42_18645 SM00470 ParB-like nuclease domain QR42_18660 SM00470 ParB-like nuclease domain QR42_18670 SM01228 QR42_18670 QR42_18680 SM00393 Putative single-stranded nucleic acids-binding domain QR42_18680 SM01245 QR42_18680