HW35_00040 SM00382 ATPases associated with a variety of cellular activities HW35_00045 SM00357 Cold shock protein domain HW35_00055 SM00871 Bacterial transcription activator, effector binding domain HW35_00095 SM00382 ATPases associated with a variety of cellular activities HW35_00125 SM00855 Phosphoglycerate mutase family HW35_00205 SM00138 Methyltransferase, chemotaxis proteins HW35_00210 SM00448 cheY-homologous receiver domain HW35_00240 SM00448 cheY-homologous receiver domain HW35_00245 SM00073 Histidine Phosphotransfer domain HW35_00245 SM00260 Two component signalling adaptor domain HW35_00245 SM00387 Histidine kinase-like ATPases HW35_00245 SM01231 HW35_00245 HW35_00250 SM00260 Two component signalling adaptor domain HW35_00255 SM00260 Two component signalling adaptor domain HW35_00400 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). HW35_00400 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain HW35_00405 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). HW35_00405 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain HW35_00490 SM00382 ATPases associated with a variety of cellular activities HW35_00535 SM00962 SRP54-type protein, GTPase domain HW35_00555 SM01131 HW35_00555 HW35_00615 SM00342 helix_turn_helix, arabinose operon control protein HW35_00695 SM00382 ATPases associated with a variety of cellular activities HW35_00850 SM00345 helix_turn_helix gluconate operon transcriptional repressor HW35_00850 SM00866 HW35_00850 HW35_00855 SM00642 Alpha-amylase domain HW35_00885 SM00382 ATPases associated with a variety of cellular activities HW35_00965 SM00382 ATPases associated with a variety of cellular activities HW35_00975 SM01007 Class II Aldolase and Adducin N-terminal domain HW35_01015 SM01207 HW35_01015 HW35_01020 SM00881 CoA binding domain HW35_01025 SM00387 Histidine kinase-like ATPases HW35_01025 SM00433 TopoisomeraseII HW35_01030 SM00434 DNA Topoisomerase IV HW35_01095 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HW35_01110 SM00382 ATPases associated with a variety of cellular activities HW35_01135 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase HW35_01260 SM01400 HW35_01260 HW35_01275 SM00226 Low molecular weight phosphatase family HW35_01285 SM00347 helix_turn_helix multiple antibiotic resistance protein HW35_01340 SM00382 ATPases associated with a variety of cellular activities HW35_01355 SM00062 Bacterial periplasmic substrate-binding proteins HW35_01405 SM00530 Helix-turn-helix XRE-family like proteins HW35_01430 SM00450 Rhodanese Homology Domain HW35_01430 SM00849 Metallo-beta-lactamase superfamily HW35_01440 SM00450 Rhodanese Homology Domain HW35_01460 SM00382 ATPases associated with a variety of cellular activities HW35_01485 SM00530 Helix-turn-helix XRE-family like proteins HW35_01655 SM00318 Staphylococcal nuclease homologues HW35_01685 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. HW35_01720 SM01022 HW35_01720 HW35_01740 SM00387 Histidine kinase-like ATPases HW35_01740 SM00388 His Kinase A (phosphoacceptor) domain HW35_01745 SM00448 cheY-homologous receiver domain HW35_01745 SM00862 Transcriptional regulatory protein, C terminal HW35_01755 SM00864 Tubulin/FtsZ family, GTPase domain HW35_01760 SM01240 HW35_01760 HW35_01800 SM01007 Class II Aldolase and Adducin N-terminal domain HW35_01825 SM00382 ATPases associated with a variety of cellular activities HW35_01835 SM00354 helix_turn _helix lactose operon repressor HW35_01865 SM00346 helix_turn_helix isocitrate lyase regulation HW35_01910 SM00014 Acid phosphatase homologues HW35_01920 SM01130 HW35_01920 HW35_01985 SM00257 Lysin motif HW35_01985 SM00636 HW35_01985 HW35_02000 SM00490 helicase superfamily c-terminal domain HW35_02130 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain HW35_02130 SM00387 Histidine kinase-like ATPases HW35_02130 SM00388 His Kinase A (phosphoacceptor) domain HW35_02135 SM00448 cheY-homologous receiver domain HW35_02135 SM00862 Transcriptional regulatory protein, C terminal HW35_02255 SM00867 YceI-like domain HW35_02265 SM00422 helix_turn_helix, mercury resistance HW35_02275 SM00028 Tetratricopeptide repeats HW35_02285 SM00028 Tetratricopeptide repeats HW35_02330 SM00116 Domain in cystathionine beta-synthase and other proteins. HW35_02330 SM00382 ATPases associated with a variety of cellular activities HW35_02340 SM00345 helix_turn_helix gluconate operon transcriptional repressor HW35_02370 SM00382 ATPases associated with a variety of cellular activities HW35_02430 SM00091 PAS domain HW35_02475 SM00382 ATPases associated with a variety of cellular activities HW35_02590 SM00420 helix_turn_helix, Deoxyribose operon repressor HW35_02590 SM01134 HW35_02590 HW35_02600 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen HW35_02665 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. HW35_02665 SM00245 tail specific protease HW35_02720 SM00382 ATPases associated with a variety of cellular activities HW35_02735 SM00882 Coenzyme A transferase HW35_02740 SM00882 Coenzyme A transferase HW35_02795 SM00849 Metallo-beta-lactamase superfamily HW35_02825 SM00530 Helix-turn-helix XRE-family like proteins HW35_02900 SM00567 E-Z type HEAT repeats HW35_02900 SM00932 Scaffold protein Nfu/NifU N terminal HW35_02905 SM00382 ATPases associated with a variety of cellular activities HW35_02910 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. HW35_02945 SM00529 Helix-turn-helix diphteria tox regulatory element HW35_02950 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain HW35_02950 SM00437 Bacterial DNA topoisomerase I DNA-binding domain HW35_02950 SM00493 HW35_02950 HW35_02960 SM00357 Cold shock protein domain HW35_02995 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs HW35_02995 SM00475 5'-3' exonuclease HW35_03000 SM00450 Rhodanese Homology Domain HW35_03070 SM00491 HW35_03070 HW35_03075 SM00981 HW35_03075 HW35_03105 SM00487 DEAD-like helicases superfamily HW35_03105 SM00490 helicase superfamily c-terminal domain HW35_03110 SM00100 Cyclic nucleotide-monophosphate binding domain HW35_03110 SM00419 helix_turn_helix, cAMP Regulatory protein HW35_03175 SM00478 endonuclease III HW35_03175 SM00525 HW35_03175 HW35_03205 SM00479 HW35_03205 HW35_03205 SM00487 DEAD-like helicases superfamily HW35_03205 SM00491 HW35_03205 HW35_03245 SM00851 MGS-like domain HW35_03300 SM00914 HW35_03300 HW35_03305 SM00028 Tetratricopeptide repeats HW35_03345 SM00562 HW35_03345 HW35_03375 SM00411 bacterial (prokaryotic) histone like domain HW35_03425 SM00316 Ribosomal protein S1-like RNA-binding domain HW35_03430 SM00563 Phosphate acyltransferases HW35_03460 SM00870 HW35_03460 HW35_03475 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HW35_03505 SM00257 Lysin motif HW35_03515 SM00487 DEAD-like helicases superfamily HW35_03515 SM00490 helicase superfamily c-terminal domain HW35_03535 SM00257 Lysin motif HW35_03555 SM00091 PAS domain HW35_03555 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain HW35_03555 SM00387 Histidine kinase-like ATPases HW35_03555 SM00388 His Kinase A (phosphoacceptor) domain HW35_03560 SM00448 cheY-homologous receiver domain HW35_03560 SM00862 Transcriptional regulatory protein, C terminal HW35_03580 SM00363 S4 RNA-binding domain HW35_03675 SM00387 Histidine kinase-like ATPases HW35_03685 SM00936 Penicillin-binding protein 5, C-terminal domain HW35_03690 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain HW35_03785 SM00704 CDGSH-type zinc finger. Function unknown. HW35_03885 SM00861 Transketolase, pyrimidine binding domain HW35_03905 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HW35_03915 SM00091 PAS domain HW35_03915 SM00382 ATPases associated with a variety of cellular activities HW35_03935 SM00448 cheY-homologous receiver domain HW35_03940 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. HW35_03990 SM00878 Biotin carboxylase C-terminal domain HW35_04040 SM00382 ATPases associated with a variety of cellular activities HW35_04060 SM00841 Elongation factor P, C-terminal HW35_04060 SM01185 HW35_04060 HW35_04110 SM00855 Phosphoglycerate mutase family HW35_04140 SM00450 Rhodanese Homology Domain HW35_04160 SM00487 DEAD-like helicases superfamily HW35_04160 SM00490 helicase superfamily c-terminal domain HW35_04205 SM00382 ATPases associated with a variety of cellular activities HW35_04210 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor HW35_04225 SM00849 Metallo-beta-lactamase superfamily HW35_04295 SM00382 ATPases associated with a variety of cellular activities HW35_04365 SM00382 ATPases associated with a variety of cellular activities HW35_04375 SM00518 AP endonuclease family 2 HW35_04380 SM00487 DEAD-like helicases superfamily HW35_04380 SM00490 helicase superfamily c-terminal domain HW35_04420 SM00400 zinc finger HW35_04420 SM00493 HW35_04420 HW35_04435 SM00116 Domain in cystathionine beta-synthase and other proteins. HW35_04485 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. HW35_04520 SM00729 Elongator protein 3, MiaB family, Radical SAM HW35_04535 SM00271 DnaJ molecular chaperone homology domain HW35_04555 SM00729 Elongator protein 3, MiaB family, Radical SAM HW35_04560 SM00838 Elongation factor G C-terminus HW35_04600 SM00849 Metallo-beta-lactamase superfamily HW35_04610 SM00278 Helix-hairpin-helix DNA-binding motif class 1 HW35_04635 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. HW35_04645 SM01103 HW35_04645 HW35_04765 SM00732 Likely ribonuclease with RNase H fold. HW35_04775 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain HW35_04805 SM00028 Tetratricopeptide repeats HW35_04825 SM00382 ATPases associated with a variety of cellular activities HW35_04850 SM00382 ATPases associated with a variety of cellular activities HW35_04865 SM00354 helix_turn _helix lactose operon repressor HW35_04890 SM00287 Bacterial SH3 domain homologues HW35_04890 SM00646 HW35_04890 HW35_04900 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. HW35_04900 SM00954 Region found in RelA / SpoT proteins HW35_04945 SM01323 HW35_04945 HW35_04965 SM00382 ATPases associated with a variety of cellular activities HW35_04970 SM00278 Helix-hairpin-helix DNA-binding motif class 1 HW35_05035 SM01317 HW35_05035 HW35_05055 SM00316 Ribosomal protein S1-like RNA-binding domain HW35_05130 SM00382 ATPases associated with a variety of cellular activities HW35_05135 SM00382 ATPases associated with a variety of cellular activities HW35_05170 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. HW35_05170 SM00267 diguanylate cyclase HW35_05195 SM00257 Lysin motif HW35_05220 SM01004 Delta-aminolevulinic acid dehydratase HW35_05255 SM00382 ATPases associated with a variety of cellular activities HW35_05255 SM00464 Found in ATP-dependent protease La (LON) HW35_05260 SM00382 ATPases associated with a variety of cellular activities HW35_05265 SM00382 ATPases associated with a variety of cellular activities HW35_05265 SM00994 ClpX C4-type zinc finger HW35_05265 SM01086 C-terminal, D2-small domain, of ClpB protein HW35_05290 SM00382 ATPases associated with a variety of cellular activities HW35_05360 SM00909 Sporulation and spore germination HW35_05370 SM00347 helix_turn_helix multiple antibiotic resistance protein HW35_05400 SM00421 helix_turn_helix, Lux Regulon HW35_05440 SM00465 GIY-YIG type nucleases (URI domain) HW35_05455 SM00893 Electron transfer flavoprotein domain HW35_05460 SM00893 Electron transfer flavoprotein domain HW35_05485 SM00463 Small MutS-related domain HW35_05485 SM00533 DNA-binding domain of DNA mismatch repair MUTS family HW35_05485 SM00534 ATPase domain of DNA mismatch repair MUTS family HW35_05490 SM00278 Helix-hairpin-helix DNA-binding motif class 1 HW35_05490 SM00481 DNA polymerase alpha chain like domain HW35_05490 SM00483 DNA polymerase X family HW35_05525 SM00873 B3/4 domain HW35_05525 SM00874 tRNA synthetase B5 domain HW35_05525 SM00896 Ferredoxin-fold anticodon binding domain HW35_05535 SM00967 RNA 2'-O ribose methyltransferase substrate binding HW35_05575 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain HW35_05585 SM00382 ATPases associated with a variety of cellular activities HW35_05610 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HW35_05625 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain HW35_05625 SM01232 HW35_05625 HW35_05630 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs HW35_05630 SM00474 3'-5' exonuclease HW35_05630 SM00475 5'-3' exonuclease HW35_05630 SM00482 DNA polymerase A domain HW35_05640 SM00448 cheY-homologous receiver domain HW35_05640 SM00862 Transcriptional regulatory protein, C terminal HW35_05665 SM01329 HW35_05665 HW35_05705 SM00345 helix_turn_helix gluconate operon transcriptional repressor HW35_05710 SM00919 Malic enzyme, NAD binding domain HW35_05710 SM01274 HW35_05710 HW35_05715 SM00481 DNA polymerase alpha chain like domain HW35_05740 SM00116 Domain in cystathionine beta-synthase and other proteins. HW35_05750 SM00849 Metallo-beta-lactamase superfamily HW35_05760 SM01002 Alanine dehydrogenase/PNT, C-terminal domain HW35_05760 SM01003 Alanine dehydrogenase/PNT, N-terminal domain HW35_05785 SM00852 Probable molybdopterin binding domain HW35_05850 SM00981 HW35_05850 HW35_05885 SM00363 S4 RNA-binding domain HW35_05885 SM01390 HW35_05885 HW35_05895 SM00363 S4 RNA-binding domain HW35_05910 SM00116 Domain in cystathionine beta-synthase and other proteins. HW35_05920 SM00354 helix_turn _helix lactose operon repressor HW35_05925 SM00830 Chorismate mutase type II HW35_05950 SM00382 ATPases associated with a variety of cellular activities HW35_05950 SM00843 HW35_05950 HW35_05980 SM00849 Metallo-beta-lactamase superfamily HW35_06000 SM00642 Alpha-amylase domain HW35_06005 SM00046 Diacylglycerol kinase catalytic domain (presumed) HW35_06055 SM00420 helix_turn_helix, Deoxyribose operon repressor HW35_06065 SM00382 ATPases associated with a variety of cellular activities HW35_06090 SM00363 S4 RNA-binding domain HW35_06110 SM00450 Rhodanese Homology Domain HW35_06135 SM00729 Elongator protein 3, MiaB family, Radical SAM HW35_06185 SM00382 ATPases associated with a variety of cellular activities HW35_06215 SM00829 Enoylreductase HW35_06270 SM00382 ATPases associated with a variety of cellular activities HW35_06355 SM01234 HW35_06355 HW35_06360 SM00947 Carbonic anhydrase HW35_06375 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain HW35_06430 SM00642 Alpha-amylase domain HW35_06615 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). HW35_06615 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain HW35_06625 SM00257 Lysin motif HW35_06670 SM01018 B12 binding domain HW35_06675 SM00347 helix_turn_helix multiple antibiotic resistance protein HW35_06715 SM00028 Tetratricopeptide repeats HW35_06715 SM00530 Helix-turn-helix XRE-family like proteins HW35_06825 SM00316 Ribosomal protein S1-like RNA-binding domain HW35_06850 SM01350 HW35_06850 HW35_06855 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain HW35_06875 SM01298 HW35_06875 HW35_06880 SM00479 HW35_06880 HW35_07005 SM00729 Elongator protein 3, MiaB family, Radical SAM HW35_07075 SM00382 ATPases associated with a variety of cellular activities HW35_07090 SM00382 ATPases associated with a variety of cellular activities HW35_07090 SM00930 HW35_07090 HW35_07125 SM00493 HW35_07125 HW35_07180 SM00382 ATPases associated with a variety of cellular activities HW35_07220 SM00244 prohibitin homologues HW35_07235 SM00382 ATPases associated with a variety of cellular activities HW35_07245 SM00062 Bacterial periplasmic substrate-binding proteins HW35_07245 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. HW35_07320 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor HW35_07360 SM00316 Ribosomal protein S1-like RNA-binding domain HW35_07360 SM00357 Cold shock protein domain HW35_07360 SM00955 HW35_07360 HW35_07395 SM01192 HW35_07395 HW35_07395 SM01193 HW35_07395 HW35_07415 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain HW35_07470 SM00858 HW35_07470 HW35_07620 SM00028 Tetratricopeptide repeats HW35_07710 SM00382 ATPases associated with a variety of cellular activities HW35_07715 SM00487 DEAD-like helicases superfamily HW35_07715 SM00490 helicase superfamily c-terminal domain HW35_07775 SM00419 helix_turn_helix, cAMP Regulatory protein HW35_07785 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor HW35_07790 SM00062 Bacterial periplasmic substrate-binding proteins HW35_07790 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. HW35_07800 SM00382 ATPases associated with a variety of cellular activities HW35_07815 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. HW35_07820 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. HW35_07820 SM00245 tail specific protease HW35_07835 SM00382 ATPases associated with a variety of cellular activities HW35_07855 SM00937 HW35_07855 HW35_07860 SM00957 SecA DEAD-like domain HW35_07860 SM00958 SecA preprotein cross-linking domain HW35_07890 SM00487 DEAD-like helicases superfamily HW35_07890 SM00490 helicase superfamily c-terminal domain HW35_07900 SM00421 helix_turn_helix, Lux Regulon HW35_07900 SM00448 cheY-homologous receiver domain HW35_07905 SM00387 Histidine kinase-like ATPases HW35_08010 SM00984 UDP binding domain HW35_08065 SM00984 UDP binding domain HW35_08140 SM00926 Molybdopterin oxidoreductase Fe4S4 domain HW35_08195 SM00646 HW35_08195 HW35_08205 SM00344 helix_turn_helix ASNC type HW35_08370 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family HW35_08375 SM00354 helix_turn _helix lactose operon repressor HW35_08415 SM01266 HW35_08415 HW35_08440 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). HW35_08440 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain HW35_08525 SM00382 ATPases associated with a variety of cellular activities HW35_08570 SM00382 ATPases associated with a variety of cellular activities HW35_08625 SM00345 helix_turn_helix gluconate operon transcriptional repressor HW35_08625 SM00895 HW35_08625 HW35_08730 SM01126 HW35_08730 HW35_08780 SM00984 UDP binding domain HW35_08810 SM00481 DNA polymerase alpha chain like domain HW35_08870 SM00257 Lysin motif HW35_08895 SM00487 DEAD-like helicases superfamily HW35_08895 SM00490 helicase superfamily c-terminal domain HW35_08915 SM00062 Bacterial periplasmic substrate-binding proteins HW35_08915 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. HW35_08925 SM00382 ATPases associated with a variety of cellular activities HW35_09085 SM00382 ATPases associated with a variety of cellular activities HW35_09160 SM00226 Low molecular weight phosphatase family HW35_09190 SM00937 HW35_09190 HW35_09210 SM00357 Cold shock protein domain HW35_09210 SM00382 ATPases associated with a variety of cellular activities HW35_09210 SM00959 Rho termination factor, N-terminal domain HW35_09235 SM00448 cheY-homologous receiver domain HW35_09295 SM00155 Phospholipase D. Active site motifs. HW35_09310 SM00836 DALR anticodon binding domain HW35_09310 SM01016 Arginyl tRNA synthetase N terminal dom HW35_09355 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. HW35_09495 SM00382 ATPases associated with a variety of cellular activities HW35_09525 SM00382 ATPases associated with a variety of cellular activities HW35_09530 SM00382 ATPases associated with a variety of cellular activities HW35_09555 SM00382 ATPases associated with a variety of cellular activities HW35_09560 SM00382 ATPases associated with a variety of cellular activities HW35_09565 SM01022 HW35_09565 HW35_09585 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase HW35_09630 SM00345 helix_turn_helix gluconate operon transcriptional repressor HW35_09630 SM00895 HW35_09630 HW35_09705 SM00382 ATPases associated with a variety of cellular activities HW35_09780 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. HW35_09785 SM00849 Metallo-beta-lactamase superfamily HW35_09800 SM00091 PAS domain HW35_09800 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain HW35_09800 SM00387 Histidine kinase-like ATPases HW35_09800 SM00388 His Kinase A (phosphoacceptor) domain HW35_09805 SM00448 cheY-homologous receiver domain HW35_09805 SM00862 Transcriptional regulatory protein, C terminal HW35_09810 SM00257 Lysin motif HW35_09810 SM01208 HW35_09810 HW35_09835 SM00788 Adenylosuccinate synthetase HW35_09855 SM00267 diguanylate cyclase HW35_09895 SM00926 Molybdopterin oxidoreductase Fe4S4 domain HW35_09920 SM00470 ParB-like nuclease domain HW35_09930 SM00470 ParB-like nuclease domain HW35_09940 SM01228 HW35_09940 HW35_09950 SM00393 Putative single-stranded nucleic acids-binding domain HW35_09950 SM01245 HW35_09950 HW35_09970 SM00382 ATPases associated with a variety of cellular activities HW35_09970 SM00760 Bacterial dnaA protein helix-turn-helix domain HW35_09975 SM00480 DNA polymerase III beta subunit HW35_09995 SM00387 Histidine kinase-like ATPases HW35_09995 SM00433 TopoisomeraseII HW35_10000 SM00434 DNA Topoisomerase IV HW35_10040 SM00116 Domain in cystathionine beta-synthase and other proteins. HW35_10040 SM01240 HW35_10040 HW35_10045 SM00936 Penicillin-binding protein 5, C-terminal domain HW35_10080 SM00257 Lysin motif HW35_10080 SM00636 HW35_10080 HW35_10090 SM00382 ATPases associated with a variety of cellular activities HW35_10100 SM00493 HW35_10100 HW35_10180 SM00465 GIY-YIG type nucleases (URI domain) HW35_10190 SM00966 SpoVT / AbrB like domain HW35_10210 SM01208 HW35_10210 HW35_10215 SM00493 HW35_10215 HW35_10220 SM00650 Ribosomal RNA adenine dimethylases HW35_10265 SM01400 HW35_10265 HW35_10285 SM00487 DEAD-like helicases superfamily HW35_10285 SM00490 helicase superfamily c-terminal domain HW35_10285 SM00982 HW35_10285 HW35_10285 SM01058 CarD-like/TRCF domain HW35_10290 SM00966 SpoVT / AbrB like domain HW35_10305 SM00363 S4 RNA-binding domain HW35_10325 SM00316 Ribosomal protein S1-like RNA-binding domain HW35_10335 SM00331 Sigma factor PP2C-like phosphatases HW35_10335 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain HW35_10345 SM00220 Serine/Threonine protein kinases, catalytic domain HW35_10350 SM00977 TilS substrate C-terminal domain HW35_10360 SM00382 ATPases associated with a variety of cellular activities HW35_10395 SM00905 Dihydroneopterin aldolase HW35_10405 SM00530 Helix-turn-helix XRE-family like proteins HW35_10580 SM00382 ATPases associated with a variety of cellular activities HW35_10580 SM01086 C-terminal, D2-small domain, of ClpB protein HW35_10585 SM00382 ATPases associated with a variety of cellular activities HW35_10590 SM00670 Large family of predicted nucleotide-binding domains HW35_10615 SM00840 HW35_10615 HW35_10620 SM00535 Ribonuclease III family HW35_10625 SM00967 RNA 2'-O ribose methyltransferase substrate binding HW35_10635 SM00421 helix_turn_helix, Lux Regulon HW35_10645 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. HW35_10645 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. HW35_10650 SM00649 Ribosomal protein L11/L12 HW35_10680 SM00663 RNA polymerase I subunit A N-terminus HW35_10700 SM00838 Elongation factor G C-terminus HW35_10700 SM00889 Elongation factor G, domain IV HW35_10710 SM01403 HW35_10710 HW35_10730 SM01382 HW35_10730 HW35_10730 SM01383 HW35_10730 HW35_10745 SM00322 K homology RNA-binding domain HW35_10765 SM01374 HW35_10765 HW35_10770 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. HW35_10825 SM00316 Ribosomal protein S1-like RNA-binding domain HW35_10845 SM00662 RNA polymerases D HW35_10855 SM00382 ATPases associated with a variety of cellular activities HW35_10860 SM00382 ATPases associated with a variety of cellular activities HW35_10900 SM00382 ATPases associated with a variety of cellular activities HW35_10930 SM00382 ATPases associated with a variety of cellular activities HW35_10965 SM00646 HW35_10965 HW35_11160 SM00448 cheY-homologous receiver domain HW35_11160 SM00862 Transcriptional regulatory protein, C terminal HW35_11165 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain HW35_11165 SM00387 Histidine kinase-like ATPases HW35_11165 SM00388 His Kinase A (phosphoacceptor) domain HW35_11230 SM00347 helix_turn_helix multiple antibiotic resistance protein HW35_11275 SM00530 Helix-turn-helix XRE-family like proteins HW35_11280 SM00052 Putative diguanylate phosphodiesterase HW35_11280 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) HW35_11280 SM00091 PAS domain HW35_11280 SM00267 diguanylate cyclase HW35_11310 SM00257 Lysin motif HW35_11310 SM00631 HW35_11310 HW35_11320 SM00244 prohibitin homologues HW35_11340 SM00836 DALR anticodon binding domain HW35_11340 SM01016 Arginyl tRNA synthetase N terminal dom HW35_11375 SM00116 Domain in cystathionine beta-synthase and other proteins. HW35_11375 SM00924 MgtE intracellular N domain HW35_11420 SM01005 Alanine racemase, C-terminal domain HW35_11445 SM00316 Ribosomal protein S1-like RNA-binding domain HW35_11445 SM00732 Likely ribonuclease with RNase H fold. HW35_11455 SM00731 SprT homologues. HW35_11555 SM00382 ATPases associated with a variety of cellular activities HW35_11565 SM00881 CoA binding domain HW35_11580 SM00883 Chaperonin 10 Kd subunit HW35_11640 SM01061 CAT RNA binding domain HW35_11680 SM01001 AIR carboxylase HW35_11690 SM00998 Adenylosuccinate lyase C-terminus HW35_11705 SM01211 HW35_11705 HW35_11730 SM00798 AICARFT/IMPCHase bienzyme HW35_11730 SM00851 MGS-like domain HW35_11735 SM01209 HW35_11735 HW35_11735 SM01210 HW35_11735 HW35_11770 SM00278 Helix-hairpin-helix DNA-binding motif class 1 HW35_11770 SM00292 breast cancer carboxy-terminal domain HW35_11770 SM00532 Ligase N family HW35_11830 SM00845 GatB domain HW35_11845 SM01207 HW35_11845 HW35_11855 SM00046 Diacylglycerol kinase catalytic domain (presumed) HW35_11970 SM00116 Domain in cystathionine beta-synthase and other proteins. HW35_11970 SM01091 Transporter associated domain HW35_11990 SM01061 CAT RNA binding domain HW35_12015 SM00382 ATPases associated with a variety of cellular activities HW35_12080 SM00354 helix_turn _helix lactose operon repressor HW35_12090 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain HW35_12090 SM00387 Histidine kinase-like ATPases HW35_12095 SM00342 helix_turn_helix, arabinose operon control protein HW35_12095 SM00448 cheY-homologous receiver domain HW35_12110 SM00382 ATPases associated with a variety of cellular activities HW35_12120 SM00345 helix_turn_helix gluconate operon transcriptional repressor HW35_12125 SM00382 ATPases associated with a variety of cellular activities HW35_12235 SM00382 ATPases associated with a variety of cellular activities HW35_12250 SM00849 Metallo-beta-lactamase superfamily HW35_12270 SM00382 ATPases associated with a variety of cellular activities HW35_12275 SM00387 Histidine kinase-like ATPases HW35_12280 SM00448 cheY-homologous receiver domain HW35_12280 SM00862 Transcriptional regulatory protein, C terminal HW35_12325 SM00072 Guanylate kinase homologues. HW35_12350 SM00387 Histidine kinase-like ATPases HW35_12350 SM00388 His Kinase A (phosphoacceptor) domain HW35_12380 SM01038 Beta galactosidase small chain HW35_12395 SM00382 ATPases associated with a variety of cellular activities HW35_12400 SM00062 Bacterial periplasmic substrate-binding proteins HW35_12400 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. HW35_12470 SM00382 ATPases associated with a variety of cellular activities HW35_12480 SM00257 Lysin motif HW35_12515 SM00382 ATPases associated with a variety of cellular activities HW35_12530 SM00354 helix_turn _helix lactose operon repressor HW35_12570 SM00487 DEAD-like helicases superfamily HW35_12570 SM00490 helicase superfamily c-terminal domain HW35_12600 SM00354 helix_turn _helix lactose operon repressor HW35_12630 SM00116 Domain in cystathionine beta-synthase and other proteins. HW35_12710 SM00382 ATPases associated with a variety of cellular activities HW35_12725 SM00530 Helix-turn-helix XRE-family like proteins HW35_12735 SM00822 HW35_12735 HW35_12765 SM00823 Phosphopantetheine attachment site HW35_12770 SM00923 MbtH-like protein HW35_12895 SM00382 ATPases associated with a variety of cellular activities HW35_13000 SM00100 Cyclic nucleotide-monophosphate binding domain HW35_13000 SM00419 helix_turn_helix, cAMP Regulatory protein HW35_13005 SM00419 helix_turn_helix, cAMP Regulatory protein HW35_13080 SM00346 helix_turn_helix isocitrate lyase regulation HW35_13085 SM00859 Semialdehyde dehydrogenase, NAD binding domain HW35_13105 SM00479 HW35_13105 HW35_13145 SM00354 helix_turn _helix lactose operon repressor HW35_13175 SM00642 Alpha-amylase domain HW35_13245 SM00829 Enoylreductase HW35_13250 SM00829 Enoylreductase HW35_13285 SM01329 HW35_13285 HW35_13290 SM00917 LeuA allosteric (dimerisation) domain HW35_13325 SM00422 helix_turn_helix, mercury resistance HW35_13335 SM00062 Bacterial periplasmic substrate-binding proteins HW35_13335 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. HW35_13345 SM00382 ATPases associated with a variety of cellular activities HW35_13375 SM00341 Helicase and RNase D C-terminal HW35_13375 SM00487 DEAD-like helicases superfamily HW35_13375 SM00490 helicase superfamily c-terminal domain HW35_13375 SM00956 HW35_13375 HW35_13395 SM00382 ATPases associated with a variety of cellular activities HW35_13425 SM00387 Histidine kinase-like ATPases HW35_13430 SM00448 cheY-homologous receiver domain HW35_13430 SM00850 LytTr DNA-binding domain HW35_13455 SM00387 Histidine kinase-like ATPases HW35_13455 SM00388 His Kinase A (phosphoacceptor) domain HW35_13460 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. HW35_13475 SM00926 Molybdopterin oxidoreductase Fe4S4 domain HW35_13510 SM00421 helix_turn_helix, Lux Regulon HW35_13510 SM00448 cheY-homologous receiver domain HW35_13555 SM00989 HW35_13555 HW35_13565 SM00100 Cyclic nucleotide-monophosphate binding domain HW35_13565 SM00419 helix_turn_helix, cAMP Regulatory protein HW35_13570 SM00487 DEAD-like helicases superfamily HW35_13570 SM00490 helicase superfamily c-terminal domain HW35_13610 SM00387 Histidine kinase-like ATPases HW35_13615 SM00421 helix_turn_helix, Lux Regulon HW35_13615 SM00448 cheY-homologous receiver domain HW35_13650 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain HW35_13650 SM00437 Bacterial DNA topoisomerase I DNA-binding domain HW35_13650 SM00493 HW35_13650 HW35_13685 SM00530 Helix-turn-helix XRE-family like proteins HW35_13800 SM00226 Low molecular weight phosphatase family HW35_13810 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor HW35_13845 SM00014 Acid phosphatase homologues HW35_13850 SM00342 helix_turn_helix, arabinose operon control protein HW35_13850 SM00871 Bacterial transcription activator, effector binding domain HW35_13890 SM00347 helix_turn_helix multiple antibiotic resistance protein HW35_13945 SM00448 cheY-homologous receiver domain HW35_13950 SM00387 Histidine kinase-like ATPases HW35_13995 SM00487 DEAD-like helicases superfamily HW35_13995 SM00490 helicase superfamily c-terminal domain HW35_14050 SM00926 Molybdopterin oxidoreductase Fe4S4 domain HW35_14085 SM00422 helix_turn_helix, mercury resistance HW35_14090 SM00382 ATPases associated with a variety of cellular activities HW35_14095 SM00382 ATPases associated with a variety of cellular activities HW35_14125 SM00859 Semialdehyde dehydrogenase, NAD binding domain HW35_14145 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain HW35_14150 SM00851 MGS-like domain HW35_14150 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HW35_14240 SM00478 endonuclease III HW35_14240 SM00525 HW35_14240 HW35_14270 SM00382 ATPases associated with a variety of cellular activities HW35_14290 SM00382 ATPases associated with a variety of cellular activities HW35_14435 SM00857 Resolvase, N terminal domain HW35_14440 SM00530 Helix-turn-helix XRE-family like proteins HW35_14460 SM00530 Helix-turn-helix XRE-family like proteins HW35_14515 SM00382 ATPases associated with a variety of cellular activities HW35_14555 SM00873 B3/4 domain HW35_14560 SM00567 E-Z type HEAT repeats HW35_14600 SM00763 PrkA AAA domain HW35_14625 SM00345 helix_turn_helix gluconate operon transcriptional repressor HW35_14625 SM00866 HW35_14625 HW35_14645 SM00387 Histidine kinase-like ATPases HW35_14645 SM00388 His Kinase A (phosphoacceptor) domain HW35_14665 SM01133 HW35_14665 HW35_14720 SM01002 Alanine dehydrogenase/PNT, C-terminal domain HW35_14720 SM01003 Alanine dehydrogenase/PNT, N-terminal domain HW35_14770 SM00116 Domain in cystathionine beta-synthase and other proteins. HW35_14770 SM01091 Transporter associated domain HW35_14780 SM00387 Histidine kinase-like ATPases HW35_14780 SM00388 His Kinase A (phosphoacceptor) domain HW35_14805 SM00382 ATPases associated with a variety of cellular activities HW35_14855 SM00729 Elongator protein 3, MiaB family, Radical SAM HW35_14870 SM00382 ATPases associated with a variety of cellular activities HW35_14890 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. HW35_14920 SM00347 helix_turn_helix multiple antibiotic resistance protein HW35_14945 SM00382 ATPases associated with a variety of cellular activities HW35_14995 SM00849 Metallo-beta-lactamase superfamily HW35_15120 SM00642 Alpha-amylase domain HW35_15130 SM00316 Ribosomal protein S1-like RNA-binding domain HW35_15190 SM00729 Elongator protein 3, MiaB family, Radical SAM HW35_15195 SM00100 Cyclic nucleotide-monophosphate binding domain HW35_15195 SM00419 helix_turn_helix, cAMP Regulatory protein HW35_15200 SM00729 Elongator protein 3, MiaB family, Radical SAM HW35_15210 SM00852 Probable molybdopterin binding domain HW35_15225 SM00382 ATPases associated with a variety of cellular activities HW35_15225 SM01086 C-terminal, D2-small domain, of ClpB protein HW35_15255 SM00825 Beta-ketoacyl synthase HW35_15265 SM00382 ATPases associated with a variety of cellular activities HW35_15270 SM00382 ATPases associated with a variety of cellular activities HW35_15320 SM00382 ATPases associated with a variety of cellular activities HW35_15325 SM00382 ATPases associated with a variety of cellular activities HW35_15345 SM00155 Phospholipase D. Active site motifs. HW35_15375 SM01118 HW35_15375 HW35_15385 SM00954 Region found in RelA / SpoT proteins HW35_15495 SM00857 Resolvase, N terminal domain HW35_15545 SM00382 ATPases associated with a variety of cellular activities HW35_15560 SM00914 HW35_15560 HW35_15610 SM00382 ATPases associated with a variety of cellular activities HW35_15655 SM00729 Elongator protein 3, MiaB family, Radical SAM HW35_15695 SM01007 Class II Aldolase and Adducin N-terminal domain HW35_15720 SM00563 Phosphate acyltransferases HW35_15730 SM00382 ATPases associated with a variety of cellular activities HW35_15730 SM01086 C-terminal, D2-small domain, of ClpB protein HW35_15745 SM00347 helix_turn_helix multiple antibiotic resistance protein HW35_15750 SM00387 Histidine kinase-like ATPases HW35_15750 SM00388 His Kinase A (phosphoacceptor) domain HW35_15830 SM00052 Putative diguanylate phosphodiesterase HW35_15830 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) HW35_15830 SM00091 PAS domain HW35_15830 SM00267 diguanylate cyclase HW35_15865 SM00052 Putative diguanylate phosphodiesterase HW35_15915 SM00849 Metallo-beta-lactamase superfamily HW35_15935 SM00861 Transketolase, pyrimidine binding domain HW35_16020 SM00838 Elongation factor G C-terminus HW35_16050 SM00670 Large family of predicted nucleotide-binding domains HW35_16070 SM00878 Biotin carboxylase C-terminal domain HW35_16130 SM00116 Domain in cystathionine beta-synthase and other proteins. HW35_16215 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. HW35_16250 SM00878 Biotin carboxylase C-terminal domain HW35_16295 SM00740 HW35_16295 HW35_16300 SM00740 HW35_16300 HW35_16360 SM00842 Cell division protein FtsA HW35_16365 SM00864 Tubulin/FtsZ family, GTPase domain HW35_16365 SM00865 Tubulin/FtsZ family, C-terminal domain HW35_16425 SM00363 S4 RNA-binding domain HW35_16450 SM00363 S4 RNA-binding domain HW35_16480 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain HW35_16485 SM00851 MGS-like domain HW35_16485 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain HW35_16500 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family HW35_16515 SM00831 Cation transporter/ATPase, N-terminus HW35_16530 SM00072 Guanylate kinase homologues. HW35_16535 SM01409 HW35_16535 HW35_16545 SM00487 DEAD-like helicases superfamily HW35_16545 SM00490 helicase superfamily c-terminal domain HW35_16570 SM00331 Sigma factor PP2C-like phosphatases HW35_16570 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain HW35_16575 SM00220 Serine/Threonine protein kinases, catalytic domain HW35_16575 SM00740 HW35_16575 HW35_16590 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain HW35_16610 SM01120 HW35_16610 HW35_16610 SM01121 HW35_16610 HW35_16625 SM00487 DEAD-like helicases superfamily HW35_16625 SM00490 helicase superfamily c-terminal domain HW35_16640 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. HW35_16645 SM00822 HW35_16645 HW35_16655 SM00358 Double-stranded RNA binding motif HW35_16655 SM00535 Ribonuclease III family HW35_16660 SM00968 SMC proteins Flexible Hinge Domain HW35_16665 SM00382 ATPases associated with a variety of cellular activities HW35_16665 SM00962 SRP54-type protein, GTPase domain HW35_16665 SM00963 SRP54-type protein, helical bundle domain HW35_16675 SM00382 ATPases associated with a variety of cellular activities HW35_16675 SM00962 SRP54-type protein, GTPase domain HW35_16675 SM00963 SRP54-type protein, helical bundle domain HW35_16730 SM00881 CoA binding domain HW35_16740 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain HW35_16740 SM00437 Bacterial DNA topoisomerase I DNA-binding domain HW35_16740 SM00493 HW35_16740 HW35_16755 SM00382 ATPases associated with a variety of cellular activities HW35_16755 SM01086 C-terminal, D2-small domain, of ClpB protein HW35_16800 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. HW35_16805 SM00479 HW35_16805 HW35_16805 SM00481 DNA polymerase alpha chain like domain HW35_16815 SM00316 Ribosomal protein S1-like RNA-binding domain HW35_16815 SM00322 K homology RNA-binding domain HW35_16850 SM00904 Riboflavin kinase HW35_16855 SM01387 HW35_16855 HW35_16860 SM00316 Ribosomal protein S1-like RNA-binding domain HW35_16860 SM00322 K homology RNA-binding domain HW35_16890 SM00859 Semialdehyde dehydrogenase, NAD binding domain HW35_16900 SM01130 HW35_16900 HW35_16905 SM00849 Metallo-beta-lactamase superfamily HW35_16920 SM00382 ATPases associated with a variety of cellular activities HW35_16920 SM00843 HW35_16920 HW35_16925 SM00345 helix_turn_helix gluconate operon transcriptional repressor HW35_16925 SM00866 HW35_16925 HW35_16935 SM00382 ATPases associated with a variety of cellular activities HW35_16975 SM00530 Helix-turn-helix XRE-family like proteins HW35_16985 SM00852 Probable molybdopterin binding domain HW35_16990 SM00382 ATPases associated with a variety of cellular activities HW35_16995 SM00322 K homology RNA-binding domain HW35_16995 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. HW35_17025 SM00729 Elongator protein 3, MiaB family, Radical SAM HW35_17040 SM00903 Flavin reductase like domain HW35_17045 SM00382 ATPases associated with a variety of cellular activities HW35_17060 SM00347 helix_turn_helix multiple antibiotic resistance protein HW35_17075 SM00903 Flavin reductase like domain HW35_17120 SM00533 DNA-binding domain of DNA mismatch repair MUTS family HW35_17120 SM00534 ATPase domain of DNA mismatch repair MUTS family HW35_17125 SM00853 MutL C terminal dimerisation domain HW35_17125 SM01340 HW35_17125 HW35_17150 SM00382 ATPases associated with a variety of cellular activities HW35_17170 SM00422 helix_turn_helix, mercury resistance HW35_17175 SM01230 HW35_17175 HW35_17190 SM00857 Resolvase, N terminal domain HW35_17200 SM00861 Transketolase, pyrimidine binding domain HW35_17235 SM00382 ATPases associated with a variety of cellular activities HW35_17240 SM00382 ATPases associated with a variety of cellular activities HW35_17330 SM00893 Electron transfer flavoprotein domain HW35_17335 SM00893 Electron transfer flavoprotein domain HW35_17425 SM00855 Phosphoglycerate mutase family HW35_17450 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) HW35_17450 SM00091 PAS domain HW35_17450 SM00388 His Kinase A (phosphoacceptor) domain HW35_17455 SM00387 Histidine kinase-like ATPases HW35_17540 SM00357 Cold shock protein domain HW35_17575 SM00382 ATPases associated with a variety of cellular activities HW35_17590 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain HW35_17600 SM00382 ATPases associated with a variety of cellular activities HW35_17625 SM00347 helix_turn_helix multiple antibiotic resistance protein HW35_17645 SM00946 Prolyl-tRNA synthetase, C-terminal