locus-tag class description DOE78_00005 PF08299 Bacterial dnaA protein helix-turn-helix DOE78_00005 PF11638 DnaA N-terminal domain DOE78_00005 PF00308 Bacterial dnaA protein DOE78_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain DOE78_00010 PF02767 DNA polymerase III beta subunit, central domain DOE78_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain DOE78_00020 PF02463 RecF/RecN/SMC N terminal domain DOE78_00025 PF04025 Domain of unknown function (DUF370) DOE78_00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_00030 PF01751 Toprim domain DOE78_00030 PF00204 DNA gyrase B DOE78_00030 PF00986 DNA gyrase B subunit, carboxyl terminus DOE78_00035 PF03989 DNA gyrase C-terminal domain, beta-propeller DOE78_00035 PF00521 DNA gyrase/topoisomerase IV, subunit A DOE78_00040 PF01966 HD domain DOE78_00070 PF14175 YaaC-like Protein DOE78_00075 PF00571 CBS domain DOE78_00075 PF00478 IMP dehydrogenase / GMP reductase domain DOE78_00080 PF07943 Penicillin-binding protein 5, C-terminal domain DOE78_00080 PF00768 D-alanyl-D-alanine carboxypeptidase DOE78_00085 PF01680 SOR/SNZ family DOE78_00090 PF01174 SNO glutamine amidotransferase family DOE78_00095 PF02403 Seryl-tRNA synthetase N-terminal domain DOE78_00095 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DOE78_00105 PF01712 Deoxynucleoside kinase DOE78_00110 PF01712 Deoxynucleoside kinase DOE78_00115 PF00704 Glycosyl hydrolases family 18 DOE78_00115 PF01476 LysM domain DOE78_00120 PF00857 Isochorismatase family DOE78_00125 PF14437 MafB19-like deaminase DOE78_00135 PF12169 DNA polymerase III subunits gamma and tau domain III DOE78_00145 PF13662 Toprim domain DOE78_00145 PF02132 RecR protein DOE78_00150 PF10704 Protein of unknown function (DUF2508) DOE78_00155 PF07441 SigmaK-factor processing regulatory protein BofA DOE78_00185 PF10764 Inhibitor of sigma-G Gin DOE78_00190 PF01276 Orn/Lys/Arg decarboxylase, major domain DOE78_00190 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DOE78_00195 PF02223 Thymidylate kinase DOE78_00200 PF06153 Cyclic-di-AMP receptor DOE78_00205 PF03885 Protein of unknown function (DUF327) DOE78_00210 PF09115 DNA polymerase III, delta subunit, C terminal DOE78_00215 PF04468 PSP1 C-terminal conserved region DOE78_00220 PF06156 Initiation control protein YabA DOE78_00225 PF05175 Methyltransferase small domain DOE78_00230 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DOE78_00235 PF18277 AbrB C-terminal domain DOE78_00235 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin DOE78_00240 PF08264 Anticodon-binding domain of tRNA DOE78_00240 PF09334 tRNA synthetases class I (M) DOE78_00240 PF01588 Putative tRNA binding domain DOE78_00245 PF01026 TatD related DNase DOE78_00250 PF07501 G5 domain DOE78_00250 PF06725 3D domain DOE78_00250 PF03990 G5-linked-Ubiquitin-like domain DOE78_00255 PF13662 Toprim domain DOE78_00255 PF13331 Domain of unknown function (DUF4093) DOE78_00260 PF00398 Ribosomal RNA adenine dimethylase DOE78_00265 PF05582 YabG peptidase U57 DOE78_00275 PF06257 Biofilm formation stimulator VEG DOE78_00280 PF00269 Small, acid-soluble spore proteins, alpha/beta type DOE78_00285 PF08544 GHMP kinases C terminal DOE78_00285 PF00288 GHMP kinases N terminal domain DOE78_00290 PF09182 Bacterial purine repressor, N-terminal DOE78_00290 PF00156 Phosphoribosyl transferase domain DOE78_00295 PF01042 Endoribonuclease L-PSP DOE78_00300 PF04026 SpoVG DOE78_00305 PF00132 Bacterial transferase hexapeptide (six repeats) DOE78_00305 PF00483 Nucleotidyl transferase DOE78_00310 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DOE78_00310 PF14572 Phosphoribosyl synthetase-associated domain DOE78_00315 PF14693 Ribosomal protein TL5, C-terminal domain DOE78_00315 PF01386 Ribosomal L25p family DOE78_00320 PF01195 Peptidyl-tRNA hydrolase DOE78_00325 PF10955 Protein of unknown function (DUF2757) DOE78_00330 PF17757 UvrB interaction domain DOE78_00330 PF03461 TRCF domain DOE78_00330 PF02559 CarD-like/TRCF domain DOE78_00330 PF00271 Helicase conserved C-terminal domain DOE78_00330 PF00270 DEAD/DEAH box helicase DOE78_00335 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin DOE78_00335 PF15714 Stage V sporulation protein T C-terminal, transcription factor DOE78_00340 PF01943 Polysaccharide biosynthesis protein DOE78_00340 PF14667 Polysaccharide biosynthesis C-terminal domain DOE78_00345 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DOE78_00345 PF03819 MazG nucleotide pyrophosphohydrolase domain DOE78_00350 PF01479 S4 domain DOE78_00355 PF07873 YabP family DOE78_00360 PF09578 Spore cortex protein YabQ (Spore_YabQ) DOE78_00370 PF00575 S1 RNA binding domain DOE78_00380 PF07228 Stage II sporulation protein E (SpoIIE) DOE78_00385 PF00092 von Willebrand factor type A domain DOE78_00390 PF00069 Protein kinase domain DOE78_00395 PF09179 TilS substrate binding domain DOE78_00395 PF01171 PP-loop family DOE78_00395 PF11734 TilS substrate C-terminal domain DOE78_00405 PF06480 FtsH Extracellular DOE78_00405 PF17862 AAA+ lid domain DOE78_00405 PF00004 ATPase family associated with various cellular activities (AAA) DOE78_00405 PF01434 Peptidase family M41 DOE78_00410 PF03309 Type III pantothenate kinase DOE78_00415 PF01430 Hsp33 protein DOE78_00420 PF13145 PPIC-type PPIASE domain DOE78_00425 PF00291 Pyridoxal-phosphate dependent enzyme DOE78_00430 PF04715 Anthranilate synthase component I, N terminal region DOE78_00430 PF00425 chorismate binding enzyme DOE78_00435 PF00117 Glutamine amidotransferase class-I DOE78_00440 PF01063 Amino-transferase class IV DOE78_00445 PF00809 Pterin binding enzyme DOE78_00450 PF02152 Dihydroneopterin aldolase DOE78_00455 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) DOE78_00460 PF01381 Helix-turn-helix DOE78_00465 PF01207 Dihydrouridine synthase (Dus) DOE78_00470 PF00152 tRNA synthetases class II (D, K and N) DOE78_00470 PF01336 OB-fold nucleic acid binding domain DOE78_00550 PF17727 CtsR C-terminal dimerization domain DOE78_00550 PF05848 CtsR N-terminal HTH domain DOE78_00555 PF02151 UvrB/uvrC motif DOE78_00560 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain DOE78_00565 PF00004 ATPase family associated with various cellular activities (AAA) DOE78_00565 PF10431 C-terminal, D2-small domain, of ClpB protein DOE78_00565 PF07724 AAA domain (Cdc48 subfamily) DOE78_00565 PF02861 Clp amino terminal domain, pathogenicity island component DOE78_00565 PF17871 AAA lid domain DOE78_00570 PF18073 Rubredoxin metal binding domain DOE78_00580 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase DOE78_00585 PF02542 YgbB family DOE78_00590 PF00749 tRNA synthetases class I (E and Q), catalytic domain DOE78_00595 PF06426 Serine acetyltransferase, N-terminal DOE78_00595 PF00132 Bacterial transferase hexapeptide (six repeats) DOE78_00600 PF09190 DALR domain DOE78_00600 PF01406 tRNA synthetases class I (C) catalytic domain DOE78_00605 PF00636 Ribonuclease III domain DOE78_00610 PF00588 SpoU rRNA Methylase family DOE78_00610 PF08032 RNA 2'-O ribose methyltransferase substrate binding DOE78_00615 PF05991 YacP-like NYN domain DOE78_00620 PF04542 Sigma-70 region 2 DOE78_00620 PF08281 Sigma-70, region 4 DOE78_00625 PF00471 Ribosomal protein L33 DOE78_00630 PF00584 SecE/Sec61-gamma subunits of protein translocation complex DOE78_00635 PF00467 KOW motif DOE78_00635 PF02357 Transcription termination factor nusG DOE78_00640 PF00298 Ribosomal protein L11, RNA binding domain DOE78_00640 PF03946 Ribosomal protein L11, N-terminal domain DOE78_00645 PF00687 Ribosomal protein L1p/L10e family DOE78_00650 PF00466 Ribosomal protein L10 DOE78_00655 PF00542 Ribosomal protein L7/L12 C-terminal domain DOE78_00655 PF16320 Ribosomal protein L7/L12 dimerisation domain DOE78_00660 PF05175 Methyltransferase small domain DOE78_00665 PF04563 RNA polymerase beta subunit DOE78_00665 PF04561 RNA polymerase Rpb2, domain 2 DOE78_00665 PF00562 RNA polymerase Rpb2, domain 6 DOE78_00665 PF10385 RNA polymerase beta subunit external 1 domain DOE78_00665 PF04565 RNA polymerase Rpb2, domain 3 DOE78_00665 PF04560 RNA polymerase Rpb2, domain 7 DOE78_00670 PF04997 RNA polymerase Rpb1, domain 1 DOE78_00670 PF05000 RNA polymerase Rpb1, domain 4 DOE78_00670 PF00623 RNA polymerase Rpb1, domain 2 DOE78_00670 PF04983 RNA polymerase Rpb1, domain 3 DOE78_00670 PF04998 RNA polymerase Rpb1, domain 5 DOE78_00675 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family DOE78_00680 PF00164 Ribosomal protein S12/S23 DOE78_00685 PF00177 Ribosomal protein S7p/S5e DOE78_00690 PF14492 Elongation Factor G, domain II DOE78_00690 PF03764 Elongation factor G, domain IV DOE78_00690 PF03144 Elongation factor Tu domain 2 DOE78_00690 PF00009 Elongation factor Tu GTP binding domain DOE78_00690 PF00679 Elongation factor G C-terminus DOE78_00695 PF03143 Elongation factor Tu C-terminal domain DOE78_00695 PF00009 Elongation factor Tu GTP binding domain DOE78_00695 PF03144 Elongation factor Tu domain 2 DOE78_00700 PF01507 Phosphoadenosine phosphosulfate reductase family DOE78_00705 PF01384 Phosphate transporter family DOE78_00710 PF14306 PUA-like domain DOE78_00710 PF01747 ATP-sulfurylase DOE78_00720 PF00338 Ribosomal protein S10p/S20e DOE78_00725 PF00297 Ribosomal protein L3 DOE78_00730 PF00573 Ribosomal protein L4/L1 family DOE78_00735 PF00276 Ribosomal protein L23 DOE78_00740 PF03947 Ribosomal Proteins L2, C-terminal domain DOE78_00740 PF00181 Ribosomal Proteins L2, RNA binding domain DOE78_00745 PF00203 Ribosomal protein S19 DOE78_00750 PF00237 Ribosomal protein L22p/L17e DOE78_00755 PF00189 Ribosomal protein S3, C-terminal domain DOE78_00755 PF07650 KH domain DOE78_00760 PF00252 Ribosomal protein L16p/L10e DOE78_00765 PF00831 Ribosomal L29 protein DOE78_00770 PF00366 Ribosomal protein S17 DOE78_00775 PF00238 Ribosomal protein L14p/L23e DOE78_00780 PF00467 KOW motif DOE78_00780 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 DOE78_00785 PF00673 ribosomal L5P family C-terminus DOE78_00785 PF00281 Ribosomal protein L5 DOE78_00790 PF00253 Ribosomal protein S14p/S29e DOE78_00795 PF00410 Ribosomal protein S8 DOE78_00800 PF00347 Ribosomal protein L6 DOE78_00805 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast DOE78_00810 PF03719 Ribosomal protein S5, C-terminal domain DOE78_00810 PF00333 Ribosomal protein S5, N-terminal domain DOE78_00815 PF00327 Ribosomal protein L30p/L7e DOE78_00820 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A DOE78_00825 PF00344 SecY translocase DOE78_00830 PF05191 Adenylate kinase, active site lid DOE78_00835 PF00557 Metallopeptidase family M24 DOE78_00840 PF01176 Translation initiation factor 1A / IF-1 DOE78_00845 PF00444 Ribosomal protein L36 DOE78_00850 PF00416 Ribosomal protein S13/S18 DOE78_00855 PF00411 Ribosomal protein S11 DOE78_00860 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain DOE78_00860 PF01000 RNA polymerase Rpb3/RpoA insert domain DOE78_00860 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain DOE78_00865 PF01196 Ribosomal protein L17 DOE78_00870 PF00005 ABC transporter DOE78_00875 PF00005 ABC transporter DOE78_00880 PF02361 Cobalt transport protein DOE78_00885 PF01416 tRNA pseudouridine synthase DOE78_00890 PF00572 Ribosomal protein L13 DOE78_00895 PF00380 Ribosomal protein S9/S16 DOE78_00900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_00900 PF00512 His Kinase A (phospho-acceptor) domain DOE78_00900 PF13426 PAS domain DOE78_00900 PF00989 PAS fold DOE78_00900 PF13188 PAS domain DOE78_00910 PF01520 N-acetylmuramoyl-L-alanine amidase DOE78_00915 PF10609 NUBPL iron-transfer P-loop NTPase DOE78_00920 PF17898 Spore germination GerD central core domain DOE78_00925 PF14089 KinB-signalling pathway activation in sporulation DOE78_00930 PF01522 Polysaccharide deacetylase DOE78_00995 PF00491 Arginase family DOE78_01005 PF08281 Sigma-70, region 4 DOE78_01005 PF04542 Sigma-70 region 2 DOE78_01010 PF13490 Putative zinc-finger DOE78_01015 PF02457 DisA bacterial checkpoint controller nucleotide-binding DOE78_01020 PF07949 YbbR-like protein DOE78_01025 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DOE78_01025 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DOE78_01025 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DOE78_01025 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DOE78_01030 PF01380 SIS domain DOE78_01035 PF02915 Rubrerythrin DOE78_01040 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DOE78_01040 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE78_01045 PF00753 Metallo-beta-lactamase superfamily DOE78_01045 PF00581 Rhodanese-like domain DOE78_01055 PF02583 Metal-sensitive transcriptional repressor DOE78_01060 PF13686 DsrE/DsrF/DrsH-like family DOE78_01075 PF00581 Rhodanese-like domain DOE78_01075 PF01206 Sulfurtransferase TusA DOE78_01080 PF00753 Metallo-beta-lactamase superfamily DOE78_01080 PF00581 Rhodanese-like domain DOE78_01085 PF01206 Sulfurtransferase TusA DOE78_01090 PF01925 Sulfite exporter TauE/SafE DOE78_01100 PF03323 Bacillus/Clostridium GerA spore germination protein DOE78_01105 PF05504 Spore germination B3/ GerAC like, C-terminal DOE78_01120 PF03466 LysR substrate binding domain DOE78_01120 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE78_01125 PF00175 Oxidoreductase NAD-binding domain DOE78_01125 PF00258 Flavodoxin DOE78_01125 PF00667 FAD binding domain DOE78_01130 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DOE78_01130 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DOE78_01135 PF13520 Amino acid permease DOE78_01145 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DOE78_01145 PF02378 Phosphotransferase system, EIIC DOE78_01155 PF08279 HTH domain DOE78_01155 PF05043 Mga helix-turn-helix domain DOE78_01155 PF00874 PRD domain DOE78_01155 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DOE78_01155 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DOE78_01160 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DOE78_01165 PF01232 Mannitol dehydrogenase Rossmann domain DOE78_01165 PF08125 Mannitol dehydrogenase C-terminal domain DOE78_01170 PF14139 YpzG-like protein DOE78_01175 PF00171 Aldehyde dehydrogenase family DOE78_01175 PF00465 Iron-containing alcohol dehydrogenase DOE78_01185 PF00210 Ferritin-like domain DOE78_01190 PF01098 Cell cycle protein DOE78_01200 PF03323 Bacillus/Clostridium GerA spore germination protein DOE78_01205 PF05504 Spore germination B3/ GerAC like, C-terminal DOE78_01215 PF00571 CBS domain DOE78_01215 PF01769 Divalent cation transporter DOE78_01215 PF03448 MgtE intracellular N domain DOE78_01225 PF00266 Aminotransferase class-V DOE78_01230 PF02660 Glycerol-3-phosphate acyltransferase DOE78_01235 PF01497 Periplasmic binding protein DOE78_01240 PF01032 FecCD transport family DOE78_01245 PF00005 ABC transporter DOE78_01250 PF02654 Cobalamin-5-phosphate synthase DOE78_01260 PF01923 Cobalamin adenosyltransferase DOE78_01265 PF12681 Glyoxalase-like domain DOE78_01270 PF00768 D-alanyl-D-alanine carboxypeptidase DOE78_01270 PF07943 Penicillin-binding protein 5, C-terminal domain DOE78_01275 PF01820 D-ala D-ala ligase N-terminus DOE78_01275 PF07478 D-ala D-ala ligase C-terminus DOE78_01280 PF02875 Mur ligase family, glutamate ligase domain DOE78_01280 PF08245 Mur ligase middle domain DOE78_01280 PF01225 Mur ligase family, catalytic domain DOE78_01295 PF00271 Helicase conserved C-terminal domain DOE78_01295 PF00270 DEAD/DEAH box helicase DOE78_01300 PF03851 UV-endonuclease UvdE DOE78_01305 PF03703 Bacterial PH domain DOE78_01310 PF03703 Bacterial PH domain DOE78_01315 PF01694 Rhomboid family DOE78_01320 PF01648 4'-phosphopantetheinyl transferase superfamily DOE78_01335 PF01402 Ribbon-helix-helix protein, copG family DOE78_01340 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system DOE78_01345 PF08678 Rsbr N terminal DOE78_01345 PF01740 STAS domain DOE78_01350 PF01740 STAS domain DOE78_01355 PF13581 Histidine kinase-like ATPase domain DOE78_01360 PF07228 Stage II sporulation protein E (SpoIIE) DOE78_01360 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain DOE78_01365 PF01740 STAS domain DOE78_01370 PF13581 Histidine kinase-like ATPase domain DOE78_01375 PF04542 Sigma-70 region 2 DOE78_01375 PF04539 Sigma-70 region 3 DOE78_01375 PF04545 Sigma-70, region 4 DOE78_01380 PF07228 Stage II sporulation protein E (SpoIIE) DOE78_01385 PF09371 Tex-like protein N-terminal domain DOE78_01385 PF16921 Tex protein YqgF-like domain DOE78_01385 PF00575 S1 RNA binding domain DOE78_01385 PF17674 HHH domain DOE78_01395 PF10263 SprT-like family DOE78_01395 PF17283 SprT-like zinc ribbon domain DOE78_01480 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE DOE78_01485 PF00814 Glycoprotease family DOE78_01490 PF00583 Acetyltransferase (GNAT) family DOE78_01495 PF00814 Glycoprotease family DOE78_01500 PF00005 ABC transporter DOE78_01500 PF12848 ABC transporter DOE78_01500 PF16326 ABC transporter C-terminal domain DOE78_01505 PF01967 MoaC family DOE78_01510 PF06971 Putative DNA-binding protein N-terminus DOE78_01510 PF02629 CoA binding domain DOE78_01520 PF02517 CPBP intramembrane metalloprotease DOE78_01525 PF00166 Chaperonin 10 Kd subunit DOE78_01530 PF00118 TCP-1/cpn60 chaperonin family DOE78_01535 PF00072 Response regulator receiver domain DOE78_01535 PF08664 YcbB domain DOE78_01540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_01545 PF01235 Sodium:alanine symporter family DOE78_01550 PF04960 Glutaminase DOE78_01555 PF17763 Glutaminase/Asparaginase C-terminal domain DOE78_01555 PF00710 Asparaginase, N-terminal DOE78_01560 PF10415 Fumarase C C-terminus DOE78_01560 PF00206 Lyase DOE78_01565 PF03553 Na+/H+ antiporter family DOE78_01600 PF00293 NUDIX domain DOE78_01605 PF00155 Aminotransferase class I and II DOE78_01610 PF01381 Helix-turn-helix DOE78_01610 PF07883 Cupin domain DOE78_01615 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DOE78_01620 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_01625 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_01630 PF00005 ABC transporter DOE78_01630 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DOE78_01635 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DOE78_01635 PF00005 ABC transporter DOE78_01645 PF00092 von Willebrand factor type A domain DOE78_01665 PF02743 Cache domain DOE78_01665 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE78_01665 PF00672 HAMP domain DOE78_01670 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE78_01670 PF12729 Four helix bundle sensory module for signal transduction DOE78_01670 PF00672 HAMP domain DOE78_01675 PF07690 Major Facilitator Superfamily DOE78_01680 PF00092 von Willebrand factor type A domain DOE78_01700 PF00437 Type II/IV secretion system protein DOE78_01750 PF00149 Calcineurin-like phosphoesterase DOE78_01750 PF02872 5'-nucleotidase, C-terminal domain DOE78_01755 PF13419 Haloacid dehalogenase-like hydrolase DOE78_01760 PF03636 Glycosyl hydrolase family 65, N-terminal domain DOE78_01760 PF03632 Glycosyl hydrolase family 65 central catalytic domain DOE78_01760 PF03633 Glycosyl hydrolase family 65, C-terminal domain DOE78_01765 PF07726 ATPase family associated with various cellular activities (AAA) DOE78_01765 PF17863 AAA lid domain DOE78_01770 PF01882 Protein of unknown function DUF58 DOE78_01775 PF01841 Transglutaminase-like superfamily DOE78_01775 PF13559 Domain of unknown function (DUF4129) DOE78_01775 PF11992 Domain of unknown function (DUF3488) DOE78_01780 PF02540 NAD synthase DOE78_01780 PF00117 Glutamine amidotransferase class-I DOE78_01780 PF00958 GMP synthase C terminal domain DOE78_01785 PF00860 Permease family DOE78_01790 PF03123 CAT RNA binding domain DOE78_01790 PF00874 PRD domain DOE78_01795 PF02378 Phosphotransferase system, EIIC DOE78_01795 PF00367 phosphotransferase system, EIIB DOE78_01795 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DOE78_01815 PF13520 Amino acid permease DOE78_01825 PF00731 AIR carboxylase DOE78_01830 PF02222 ATP-grasp domain DOE78_01830 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain DOE78_01835 PF10397 Adenylosuccinate lyase C-terminus DOE78_01835 PF00206 Lyase DOE78_01840 PF01259 SAICAR synthetase DOE78_01845 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase DOE78_01855 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain DOE78_01855 PF02769 AIR synthase related protein, C-terminal domain DOE78_01855 PF00586 AIR synthase related protein, N-terminal domain DOE78_01860 PF00156 Phosphoribosyl transferase domain DOE78_01870 PF00551 Formyl transferase DOE78_01875 PF01808 AICARFT/IMPCHase bienzyme DOE78_01875 PF02142 MGS-like domain DOE78_01880 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain DOE78_01880 PF02843 Phosphoribosylglycinamide synthetase, C domain DOE78_01880 PF02844 Phosphoribosylglycinamide synthetase, N domain DOE78_01885 PF11127 Protein of unknown function (DUF2892) DOE78_01890 PF13382 Adenine deaminase C-terminal domain DOE78_01890 PF01979 Amidohydrolase family DOE78_01895 PF17479 Protein of unknown function (DUF3048) C-terminal domain DOE78_01895 PF11258 Protein of unknown function (DUF3048) N-terminal domain DOE78_01900 PF01371 Trp repressor protein DOE78_01905 PF01884 PcrB family DOE78_01910 PF13361 UvrD-like helicase C-terminal domain DOE78_01910 PF00580 UvrD/REP helicase N-terminal domain DOE78_01915 PF12826 Helix-hairpin-helix motif DOE78_01915 PF01653 NAD-dependent DNA ligase adenylation domain DOE78_01915 PF00533 BRCA1 C Terminus (BRCT) domain DOE78_01915 PF03119 NAD-dependent DNA ligase C4 zinc finger domain DOE78_01915 PF03120 NAD-dependent DNA ligase OB-fold domain DOE78_01920 PF07537 CamS sex pheromone cAM373 precursor DOE78_01925 PF00171 Aldehyde dehydrogenase family DOE78_01930 PF00474 Sodium:solute symporter family DOE78_01935 PF00245 Alkaline phosphatase DOE78_01940 PF11611 Domain of unknown function (DUF4352) DOE78_01940 PF08139 Prokaryotic membrane lipoprotein lipid attachment site DOE78_01950 PF00463 Isocitrate lyase family DOE78_01955 PF07997 Protein of unknown function (DUF1694) DOE78_01960 PF02686 Glu-tRNAGln amidotransferase C subunit DOE78_01965 PF01425 Amidase DOE78_01970 PF02637 GatB domain DOE78_01970 PF02934 GatB/GatE catalytic domain DOE78_01985 PF00474 Sodium:solute symporter family DOE78_01995 PF00781 Diacylglycerol kinase catalytic domain DOE78_02000 PF01938 TRAM domain DOE78_02000 PF05958 tRNA (Uracil-5-)-methyltransferase DOE78_02000 PF13847 Methyltransferase domain DOE78_02005 PF00484 Carbonic anhydrase DOE78_02015 PF10057 Uncharacterized conserved protein (DUF2294) DOE78_02025 PF05199 GMC oxidoreductase DOE78_02025 PF00732 GMC oxidoreductase DOE78_02035 PF03737 Aldolase/RraA DOE78_02085 PF00158 Sigma-54 interaction domain DOE78_02085 PF18024 Helix-turn-helix domain DOE78_02090 PF00701 Dihydrodipicolinate synthetase family DOE78_02095 PF00465 Iron-containing alcohol dehydrogenase DOE78_02100 PF17042 Nucleotide-binding C-terminal domain DOE78_02100 PF07005 Sugar-binding N-terminal domain DOE78_02105 PF04166 Pyridoxal phosphate biosynthetic protein PdxA DOE78_02130 PF00497 Bacterial extracellular solute-binding proteins, family 3 DOE78_02135 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_02140 PF00005 ABC transporter DOE78_02155 PF01207 Dihydrouridine synthase (Dus) DOE78_02180 PF00892 EamA-like transporter family DOE78_02205 PF13411 MerR HTH family regulatory protein DOE78_02215 PF02525 Flavodoxin-like fold DOE78_02230 PF01625 Peptide methionine sulfoxide reductase DOE78_02230 PF01641 SelR domain DOE78_02240 PF00583 Acetyltransferase (GNAT) family DOE78_02255 PF01037 Lrp/AsnC ligand binding domain DOE78_02260 PF03009 Glycerophosphoryl diester phosphodiesterase family DOE78_02265 PF13538 UvrD-like helicase C-terminal domain DOE78_02275 PF13091 PLD-like domain DOE78_02280 PF01022 Bacterial regulatory protein, arsR family DOE78_02285 PF00106 short chain dehydrogenase DOE78_02295 PF13472 GDSL-like Lipase/Acylhydrolase family DOE78_02305 PF00561 alpha/beta hydrolase fold DOE78_02310 PF00440 Bacterial regulatory proteins, tetR family DOE78_02325 PF07883 Cupin domain DOE78_02340 PF04239 Protein of unknown function (DUF421) DOE78_02345 PF00141 Peroxidase DOE78_02360 PF07690 Major Facilitator Superfamily DOE78_02380 PF03323 Bacillus/Clostridium GerA spore germination protein DOE78_02385 PF05504 Spore germination B3/ GerAC like, C-terminal DOE78_02390 PF03845 Spore germination protein DOE78_02405 PF02435 Levansucrase/Invertase DOE78_02410 PF02435 Levansucrase/Invertase DOE78_02415 PF02435 Levansucrase/Invertase DOE78_02420 PF00367 phosphotransferase system, EIIB DOE78_02420 PF02378 Phosphotransferase system, EIIC DOE78_02425 PF00874 PRD domain DOE78_02425 PF03123 CAT RNA binding domain DOE78_02430 PF00881 Nitroreductase family DOE78_02445 PF03641 Possible lysine decarboxylase DOE78_02450 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DOE78_02450 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE78_02480 PF07885 Ion channel DOE78_02490 PF00596 Class II Aldolase and Adducin N-terminal domain DOE78_02495 PF09388 Spo0E like sporulation regulatory protein DOE78_02510 PF13407 Periplasmic binding protein domain DOE78_02515 PF02743 Cache domain DOE78_02515 PF00672 HAMP domain DOE78_02515 PF06580 Histidine kinase DOE78_02515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_02520 PF12833 Helix-turn-helix domain DOE78_02520 PF01497 Periplasmic binding protein DOE78_02525 PF00005 ABC transporter DOE78_02530 PF02653 Branched-chain amino acid transport system / permease component DOE78_02535 PF02653 Branched-chain amino acid transport system / permease component DOE78_02540 PF13407 Periplasmic binding protein domain DOE78_02550 PF12833 Helix-turn-helix domain DOE78_02550 PF07883 Cupin domain DOE78_02565 PF02743 Cache domain DOE78_02565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_02565 PF06580 Histidine kinase DOE78_02565 PF00672 HAMP domain DOE78_02570 PF12833 Helix-turn-helix domain DOE78_02570 PF00072 Response regulator receiver domain DOE78_02600 PF00480 ROK family DOE78_02605 PF00924 Mechanosensitive ion channel DOE78_02615 PF01361 Tautomerase enzyme DOE78_02625 PF13787 Protein of unknown function with HXXEE motif DOE78_02630 PF12822 ECF transporter, substrate-specific component DOE78_02640 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DOE78_02640 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DOE78_02645 PF06134 L-rhamnose isomerase (RhaA) DOE78_02650 PF00455 DeoR C terminal sensor domain DOE78_02650 PF08220 DeoR-like helix-turn-helix domain DOE78_02655 PF00486 Transcriptional regulatory protein, C terminal DOE78_02655 PF00072 Response regulator receiver domain DOE78_02660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_02660 PF00672 HAMP domain DOE78_02660 PF00512 His Kinase A (phospho-acceptor) domain DOE78_02675 PF12704 MacB-like periplasmic core domain DOE78_02675 PF02687 FtsX-like permease family DOE78_02675 PF00005 ABC transporter DOE78_02680 PF02687 FtsX-like permease family DOE78_02680 PF12704 MacB-like periplasmic core domain DOE78_02695 PF00465 Iron-containing alcohol dehydrogenase DOE78_02705 PF13333 Integrase core domain DOE78_02705 PF00665 Integrase core domain DOE78_02715 PF02567 Phenazine biosynthesis-like protein DOE78_02720 PF00248 Aldo/keto reductase family DOE78_02725 PF12833 Helix-turn-helix domain DOE78_02725 PF06719 AraC-type transcriptional regulator N-terminus DOE78_02730 PF00381 PTS HPr component phosphorylation site DOE78_02735 PF00107 Zinc-binding dehydrogenase DOE78_02735 PF08240 Alcohol dehydrogenase GroES-like domain DOE78_02740 PF13411 MerR HTH family regulatory protein DOE78_02745 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_02745 PF07694 5TMR of 5TMR-LYT DOE78_02745 PF06580 Histidine kinase DOE78_02760 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_02765 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_02770 PF16338 Domain of unknown function (DUF4968) DOE78_02770 PF17137 Domain of unknown function (DUF5110) DOE78_02770 PF13802 Galactose mutarotase-like DOE78_02770 PF01055 Glycosyl hydrolases family 31 DOE78_02775 PF02903 Alpha amylase, N-terminal ig-like domain DOE78_02775 PF00128 Alpha amylase, catalytic domain DOE78_02775 PF16657 Maltogenic Amylase, C-terminal domain DOE78_02785 PF00005 ABC transporter DOE78_02790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_02795 PF00072 Response regulator receiver domain DOE78_02795 PF00486 Transcriptional regulatory protein, C terminal DOE78_02800 PF00072 Response regulator receiver domain DOE78_02800 PF00990 Diguanylate cyclase, GGDEF domain DOE78_02805 PF01593 Flavin containing amine oxidoreductase DOE78_02810 PF00270 DEAD/DEAH box helicase DOE78_02810 PF00271 Helicase conserved C-terminal domain DOE78_02810 PF03880 DbpA RNA binding domain DOE78_02825 PF03466 LysR substrate binding domain DOE78_02825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE78_02830 PF01220 Dehydroquinase class II DOE78_02840 PF00440 Bacterial regulatory proteins, tetR family DOE78_02845 PF07690 Major Facilitator Superfamily DOE78_02850 PF00072 Response regulator receiver domain DOE78_02850 PF00486 Transcriptional regulatory protein, C terminal DOE78_02855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_02855 PF00672 HAMP domain DOE78_02855 PF00512 His Kinase A (phospho-acceptor) domain DOE78_02860 PF00005 ABC transporter DOE78_02865 PF02687 FtsX-like permease family DOE78_02865 PF12704 MacB-like periplasmic core domain DOE78_02865 PF00005 ABC transporter DOE78_02870 PF00317 Ribonucleotide reductase, all-alpha domain DOE78_02870 PF02867 Ribonucleotide reductase, barrel domain DOE78_02870 PF03477 ATP cone domain DOE78_02875 PF00268 Ribonucleotide reductase, small chain DOE78_02880 PF00258 Flavodoxin DOE78_02885 PF07730 Histidine kinase DOE78_02890 PF00072 Response regulator receiver domain DOE78_02890 PF00196 Bacterial regulatory proteins, luxR family DOE78_02895 PF00005 ABC transporter DOE78_02910 PF00547 Urease, gamma subunit DOE78_02915 PF00699 Urease beta subunit DOE78_02920 PF01979 Amidohydrolase family DOE78_02920 PF00449 Urease alpha-subunit, N-terminal domain DOE78_02925 PF02814 UreE urease accessory protein, N-terminal domain DOE78_02925 PF05194 UreE urease accessory protein, C-terminal domain DOE78_02930 PF01730 UreF DOE78_02935 PF02492 CobW/HypB/UreG, nucleotide-binding domain DOE78_02940 PF01774 UreD urease accessory protein DOE78_02945 PF13386 Cytochrome C biogenesis protein transmembrane region DOE78_02955 PF08447 PAS fold DOE78_02955 PF00989 PAS fold DOE78_02955 PF00512 His Kinase A (phospho-acceptor) domain DOE78_02955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_02970 PF05525 Branched-chain amino acid transport protein DOE78_03000 PF00392 Bacterial regulatory proteins, gntR family DOE78_03005 PF00005 ABC transporter DOE78_03020 PF00183 Hsp90 protein DOE78_03030 PF12708 Pectate lyase superfamily protein DOE78_03030 PF11962 Peptidase_G2, IMC autoproteolytic cleavage domain DOE78_03040 PF01329 Pterin 4 alpha carbinolamine dehydratase DOE78_03045 PF07690 Major Facilitator Superfamily DOE78_03050 PF01266 FAD dependent oxidoreductase DOE78_03065 PF00487 Fatty acid desaturase DOE78_03070 PF01741 Large-conductance mechanosensitive channel, MscL DOE78_03080 PF10502 Signal peptidase, peptidase S26 DOE78_03085 PF13520 Amino acid permease DOE78_03090 PF00005 ABC transporter DOE78_03095 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_03100 PF00497 Bacterial extracellular solute-binding proteins, family 3 DOE78_03105 PF00392 Bacterial regulatory proteins, gntR family DOE78_03105 PF07729 FCD domain DOE78_03110 PF01053 Cys/Met metabolism PLP-dependent enzyme DOE78_03115 PF12728 Helix-turn-helix domain DOE78_03120 PF00497 Bacterial extracellular solute-binding proteins, family 3 DOE78_03130 PF00005 ABC transporter DOE78_03135 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DOE78_03140 PF06738 Putative threonine/serine exporter DOE78_03160 PF03845 Spore germination protein DOE78_03165 PF03323 Bacillus/Clostridium GerA spore germination protein DOE78_03170 PF05504 Spore germination B3/ GerAC like, C-terminal DOE78_03175 PF00271 Helicase conserved C-terminal domain DOE78_03175 PF00270 DEAD/DEAH box helicase DOE78_03180 PF01425 Amidase DOE78_03200 PF01266 FAD dependent oxidoreductase DOE78_03200 PF00355 Rieske [2Fe-2S] domain DOE78_03205 PF06827 Zinc finger found in FPG and IleRS DOE78_03205 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DOE78_03205 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DOE78_03210 PF00188 Cysteine-rich secretory protein family DOE78_03225 PF09922 Cell wall-active antibiotics response 4TMS YvqF DOE78_03230 PF00672 HAMP domain DOE78_03230 PF07730 Histidine kinase DOE78_03230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_03235 PF00072 Response regulator receiver domain DOE78_03235 PF00196 Bacterial regulatory proteins, luxR family DOE78_03240 PF12848 ABC transporter DOE78_03240 PF16326 ABC transporter C-terminal domain DOE78_03240 PF00005 ABC transporter DOE78_03245 PF01943 Polysaccharide biosynthesis protein DOE78_03255 PF00313 'Cold-shock' DNA-binding domain DOE78_03265 PF08361 MAATS-type transcriptional repressor, C-terminal region DOE78_03265 PF00440 Bacterial regulatory proteins, tetR family DOE78_03270 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DOE78_03270 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DOE78_03275 PF10925 Protein of unknown function (DUF2680) DOE78_03280 PF14489 QueF-like protein DOE78_03285 PF00672 HAMP domain DOE78_03285 PF02743 Cache domain DOE78_03285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE78_03290 PF10127 RNA repair pathway DNA polymerase beta family DOE78_03300 PF12867 DinB superfamily DOE78_03305 PF00005 ABC transporter DOE78_03310 PF02687 FtsX-like permease family DOE78_03315 PF00672 HAMP domain DOE78_03315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_03315 PF00512 His Kinase A (phospho-acceptor) domain DOE78_03320 PF00486 Transcriptional regulatory protein, C terminal DOE78_03320 PF00072 Response regulator receiver domain DOE78_03325 PF01032 FecCD transport family DOE78_03330 PF01032 FecCD transport family DOE78_03335 PF00005 ABC transporter DOE78_03340 PF01497 Periplasmic binding protein DOE78_03345 PF03992 Antibiotic biosynthesis monooxygenase DOE78_03350 PF04239 Protein of unknown function (DUF421) DOE78_03355 PF00708 Acylphosphatase DOE78_03365 PF02073 Thermophilic metalloprotease (M29) DOE78_03370 PF07690 Major Facilitator Superfamily DOE78_03375 PF01131 DNA topoisomerase DOE78_03375 PF01751 Toprim domain DOE78_03380 PF10417 C-terminal domain of 1-Cys peroxiredoxin DOE78_03380 PF00578 AhpC/TSA family DOE78_03385 PF00578 AhpC/TSA family DOE78_03385 PF10417 C-terminal domain of 1-Cys peroxiredoxin DOE78_03390 PF09350 Domain of unknown function (DUF1992) DOE78_03395 PF01618 MotA/TolQ/ExbB proton channel family DOE78_03400 PF00691 OmpA family DOE78_03400 PF13677 Membrane MotB of proton-channel complex MotA/MotB DOE78_03405 PF00294 pfkB family carbohydrate kinase DOE78_03410 PF04227 Indigoidine synthase A like protein DOE78_03425 PF08671 Anti-repressor SinI DOE78_03425 PF01381 Helix-turn-helix DOE78_03430 PF00557 Metallopeptidase family M24 DOE78_03440 PF00072 Response regulator receiver domain DOE78_03440 PF01966 HD domain DOE78_03445 PF06569 Protein of unknown function (DUF1128) DOE78_03450 PF01451 Low molecular weight phosphotyrosine protein phosphatase DOE78_03460 PF03631 Virulence factor BrkB DOE78_03470 PF07690 Major Facilitator Superfamily DOE78_03480 PF16242 Pyridoxamine 5'-phosphate oxidase like DOE78_03485 PF01699 Sodium/calcium exchanger protein DOE78_03495 PF14167 YfkD-like protein DOE78_03500 PF08756 YfkB-like domain DOE78_03500 PF04055 Radical SAM superfamily DOE78_03520 PF05681 Fumarate hydratase (Fumerase) DOE78_03520 PF05683 Fumarase C-terminus DOE78_03525 PF01202 Shikimate kinase DOE78_03530 PF01522 Polysaccharide deacetylase DOE78_03550 PF02899 Phage integrase, N-terminal SAM-like domain DOE78_03550 PF00589 Phage integrase family DOE78_03570 PF00730 HhH-GPD superfamily base excision DNA repair protein DOE78_03575 PF05958 tRNA (Uracil-5-)-methyltransferase DOE78_03575 PF01938 TRAM domain DOE78_03580 PF07308 Protein of unknown function (DUF1456) DOE78_03590 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_03595 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_03600 PF05048 Periplasmic copper-binding protein (NosD) DOE78_03600 PF18835 Beta helix repeat of Inulin fructotransferase DOE78_03610 PF02743 Cache domain DOE78_03610 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_03610 PF06580 Histidine kinase DOE78_03610 PF00672 HAMP domain DOE78_03615 PF00072 Response regulator receiver domain DOE78_03615 PF12833 Helix-turn-helix domain DOE78_03625 PF00106 short chain dehydrogenase DOE78_03630 PF01380 SIS domain DOE78_03635 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DOE78_03645 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) DOE78_03650 PF08240 Alcohol dehydrogenase GroES-like domain DOE78_03650 PF00107 Zinc-binding dehydrogenase DOE78_03655 PF01638 HxlR-like helix-turn-helix DOE78_03670 PF03323 Bacillus/Clostridium GerA spore germination protein DOE78_03675 PF12848 ABC transporter DOE78_03675 PF00005 ABC transporter DOE78_03680 PF00892 EamA-like transporter family DOE78_03695 PF13556 PucR C-terminal helix-turn-helix domain DOE78_03695 PF05651 Putative sugar diacid recognition DOE78_03695 PF17853 GGDEF-like domain DOE78_03700 PF02447 GntP family permease DOE78_03705 PF02595 Glycerate kinase family DOE78_03710 PF00005 ABC transporter DOE78_03715 PF01497 Periplasmic binding protein DOE78_03720 PF01032 FecCD transport family DOE78_03725 PF01032 FecCD transport family DOE78_03735 PF00072 Response regulator receiver domain DOE78_03735 PF00486 Transcriptional regulatory protein, C terminal DOE78_03740 PF00512 His Kinase A (phospho-acceptor) domain DOE78_03740 PF00989 PAS fold DOE78_03740 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_03740 PF16736 Single Cache-like DOE78_03745 PF01497 Periplasmic binding protein DOE78_03750 PF18698 Histidine kinase sensor domain DOE78_03750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_03750 PF00989 PAS fold DOE78_03750 PF00512 His Kinase A (phospho-acceptor) domain DOE78_03750 PF00672 HAMP domain DOE78_03755 PF00486 Transcriptional regulatory protein, C terminal DOE78_03755 PF00072 Response regulator receiver domain DOE78_03770 PF01370 NAD dependent epimerase/dehydratase family DOE78_03775 PF13439 Glycosyltransferase Family 4 DOE78_03775 PF00534 Glycosyl transferases group 1 DOE78_03780 PF01636 Phosphotransferase enzyme family DOE78_03790 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase DOE78_03790 PF14572 Phosphoribosyl synthetase-associated domain DOE78_03815 PF00990 Diguanylate cyclase, GGDEF domain DOE78_03825 PF02872 5'-nucleotidase, C-terminal domain DOE78_03825 PF00149 Calcineurin-like phosphoesterase DOE78_03830 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain DOE78_03830 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DOE78_03835 PF02447 GntP family permease DOE78_03840 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DOE78_03840 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DOE78_03845 PF00392 Bacterial regulatory proteins, gntR family DOE78_03845 PF07729 FCD domain DOE78_03860 PF01225 Mur ligase family, catalytic domain DOE78_03860 PF02875 Mur ligase family, glutamate ligase domain DOE78_03860 PF08245 Mur ligase middle domain DOE78_03880 PF07568 Histidine kinase DOE78_03880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_03880 PF12282 Signal transduction histidine kinase DOE78_03885 PF03861 ANTAR domain DOE78_03885 PF00072 Response regulator receiver domain DOE78_03890 PF06277 Ethanolamine utilisation protein EutA DOE78_03895 PF06751 Ethanolamine ammonia lyase large subunit (EutB) DOE78_03900 PF05985 Ethanolamine ammonia-lyase light chain (EutC) DOE78_03905 PF04346 Ethanolamine utilisation protein, EutH DOE78_03915 PF02696 Uncharacterized ACR, YdiU/UPF0061 family DOE78_03920 PF01773 Na+ dependent nucleoside transporter N-terminus DOE78_03920 PF07662 Na+ dependent nucleoside transporter C-terminus DOE78_03930 PF01497 Periplasmic binding protein DOE78_03935 PF07995 Glucose / Sorbosone dehydrogenase DOE78_03940 PF00665 Integrase core domain DOE78_03940 PF13333 Integrase core domain DOE78_03945 PF00176 SNF2 family N-terminal domain DOE78_03945 PF00271 Helicase conserved C-terminal domain DOE78_03945 PF04434 SWIM zinc finger DOE78_03955 PF13416 Bacterial extracellular solute-binding protein DOE78_03960 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_03965 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_03970 PF08533 Beta-galactosidase C-terminal domain DOE78_03970 PF08532 Beta-galactosidase trimerisation domain DOE78_03970 PF02449 Beta-galactosidase DOE78_03975 PF07745 Glycosyl hydrolase family 53 DOE78_03980 PF00356 Bacterial regulatory proteins, lacI family DOE78_04000 PF12833 Helix-turn-helix domain DOE78_04005 PF10509 Galactokinase galactose-binding signature DOE78_04005 PF00288 GHMP kinases N terminal domain DOE78_04005 PF08544 GHMP kinases C terminal DOE78_04010 PF16363 GDP-mannose 4,6 dehydratase DOE78_04015 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain DOE78_04015 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain DOE78_04020 PF01263 Aldose 1-epimerase DOE78_04025 PF01758 Sodium Bile acid symporter family DOE78_04045 PF00348 Polyprenyl synthetase DOE78_04050 PF02535 ZIP Zinc transporter DOE78_04080 PF00296 Luciferase-like monooxygenase DOE78_04095 PF02566 OsmC-like protein DOE78_04100 PF01047 MarR family DOE78_04110 PF00248 Aldo/keto reductase family DOE78_04125 PF02805 Metal binding domain of Ada DOE78_04125 PF12833 Helix-turn-helix domain DOE78_04130 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain DOE78_04130 PF00730 HhH-GPD superfamily base excision DNA repair protein DOE78_04135 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DOE78_04135 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DOE78_04140 PF00082 Subtilase family DOE78_04145 PF00258 Flavodoxin DOE78_04155 PF00258 Flavodoxin DOE78_04160 PF13407 Periplasmic binding protein domain DOE78_04165 PF00005 ABC transporter DOE78_04170 PF02653 Branched-chain amino acid transport system / permease component DOE78_04180 PF00672 HAMP domain DOE78_04180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_04180 PF02743 Cache domain DOE78_04180 PF06580 Histidine kinase DOE78_04185 PF00196 Bacterial regulatory proteins, luxR family DOE78_04185 PF00072 Response regulator receiver domain DOE78_04190 PF13407 Periplasmic binding protein domain DOE78_04195 PF08281 Sigma-70, region 4 DOE78_04195 PF12680 SnoaL-like domain DOE78_04195 PF04542 Sigma-70 region 2 DOE78_04200 PF01593 Flavin containing amine oxidoreductase DOE78_04215 PF00258 Flavodoxin DOE78_04215 PF00753 Metallo-beta-lactamase superfamily DOE78_04220 PF14759 Reductase C-terminal DOE78_04220 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE78_04225 PF00301 Rubredoxin DOE78_04230 PF00027 Cyclic nucleotide-binding domain DOE78_04230 PF13545 Crp-like helix-turn-helix domain DOE78_04240 PF00072 Response regulator receiver domain DOE78_04245 PF00324 Amino acid permease DOE78_04250 PF03845 Spore germination protein DOE78_04255 PF03323 Bacillus/Clostridium GerA spore germination protein DOE78_04260 PF05504 Spore germination B3/ GerAC like, C-terminal DOE78_04280 PF07690 Major Facilitator Superfamily DOE78_04285 PF05362 Lon protease (S16) C-terminal proteolytic domain DOE78_04285 PF13180 PDZ domain DOE78_04300 PF02311 AraC-like ligand binding domain DOE78_04300 PF12833 Helix-turn-helix domain DOE78_04310 PF00392 Bacterial regulatory proteins, gntR family DOE78_04320 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_04325 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_04330 PF16369 C-terminal lipocalin-like domain DOE78_04330 PF04616 Glycosyl hydrolases family 43 DOE78_04335 PF04616 Glycosyl hydrolases family 43 DOE78_04335 PF16369 C-terminal lipocalin-like domain DOE78_04345 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DOE78_04345 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DOE78_04350 PF00596 Class II Aldolase and Adducin N-terminal domain DOE78_04355 PF02610 L-arabinose isomerase DOE78_04355 PF11762 L-arabinose isomerase C-terminal domain DOE78_04360 PF02780 Transketolase, C-terminal domain DOE78_04360 PF00456 Transketolase, thiamine diphosphate binding domain DOE78_04360 PF02779 Transketolase, pyrimidine binding domain DOE78_04365 PF06964 Alpha-L-arabinofuranosidase C-terminal domain DOE78_04375 PF06964 Alpha-L-arabinofuranosidase C-terminal domain DOE78_04380 PF01263 Aldose 1-epimerase DOE78_04385 PF13685 Iron-containing alcohol dehydrogenase DOE78_04390 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain DOE78_04390 PF04616 Glycosyl hydrolases family 43 DOE78_04395 PF05270 Alpha-L-arabinofuranosidase B (ABFB) domain DOE78_04395 PF04616 Glycosyl hydrolases family 43 DOE78_04400 PF01554 MatE DOE78_04415 PF06725 3D domain DOE78_04415 PF01476 LysM domain DOE78_04430 PF07690 Major Facilitator Superfamily DOE78_04435 PF00440 Bacterial regulatory proteins, tetR family DOE78_04440 PF00106 short chain dehydrogenase DOE78_04445 PF12833 Helix-turn-helix domain DOE78_04445 PF12625 Arabinose-binding domain of AraC transcription regulator, N-term DOE78_04455 PF07690 Major Facilitator Superfamily DOE78_04475 PF00892 EamA-like transporter family DOE78_04485 PF00293 NUDIX domain DOE78_04500 PF01476 LysM domain DOE78_04500 PF03734 L,D-transpeptidase catalytic domain DOE78_04515 PF00929 Exonuclease DOE78_04515 PF02811 PHP domain DOE78_04515 PF14579 Helix-hairpin-helix motif DOE78_04515 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DOE78_04515 PF07733 Bacterial DNA polymerase III alpha NTPase domain DOE78_04515 PF11490 DNA polymerase III polC-type N-terminus II DOE78_04520 PF02086 D12 class N6 adenine-specific DNA methyltransferase DOE78_04535 PF00210 Ferritin-like domain DOE78_04540 PF07690 Major Facilitator Superfamily DOE78_04550 PF02463 RecF/RecN/SMC N terminal domain DOE78_04575 PF02567 Phenazine biosynthesis-like protein DOE78_04585 PF01810 LysE type translocator DOE78_04590 PF01152 Bacterial-like globin DOE78_04595 PF00583 Acetyltransferase (GNAT) family DOE78_04605 PF00990 Diguanylate cyclase, GGDEF domain DOE78_04605 PF03707 Bacterial signalling protein N terminal repeat DOE78_04605 PF00563 EAL domain DOE78_04630 PF00174 Oxidoreductase molybdopterin binding domain DOE78_04635 PF01048 Phosphorylase superfamily DOE78_04655 PF00497 Bacterial extracellular solute-binding proteins, family 3 DOE78_04660 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_04665 PF00005 ABC transporter DOE78_04670 PF04962 KduI/IolB family DOE78_04680 PF04074 YhcH/YjgK/YiaL DOE78_04685 PF03812 2-keto-3-deoxygluconate permease DOE78_04690 PF00294 pfkB family carbohydrate kinase DOE78_04695 PF01614 Bacterial transcriptional regulator DOE78_04695 PF09339 IclR helix-turn-helix domain DOE78_04700 PF01081 KDPG and KHG aldolase DOE78_04705 PF05067 Manganese containing catalase DOE78_04715 PF00324 Amino acid permease DOE78_04720 PF02574 Homocysteine S-methyltransferase DOE78_04745 PF00005 ABC transporter DOE78_04755 PF02824 TGS domain DOE78_04755 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DOE78_04755 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DOE78_04755 PF03129 Anticodon binding domain DOE78_04760 PF08447 PAS fold DOE78_04760 PF00512 His Kinase A (phospho-acceptor) domain DOE78_04760 PF00989 PAS fold DOE78_04760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_04775 PF13171 Protein of unknown function (DUF4004) DOE78_04785 PF04519 Polymer-forming cytoskeletal DOE78_04800 PF03176 MMPL family DOE78_04805 PF00873 AcrB/AcrD/AcrF family DOE78_04810 PF04055 Radical SAM superfamily DOE78_04810 PF06968 Biotin and Thiamin Synthesis associated domain DOE78_04825 PF01209 ubiE/COQ5 methyltransferase family DOE78_04830 PF10502 Signal peptidase, peptidase S26 DOE78_04835 PF00497 Bacterial extracellular solute-binding proteins, family 3 DOE78_04840 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_04845 PF00005 ABC transporter DOE78_04860 PF03746 LamB/YcsF family DOE78_04875 PF03551 Transcriptional regulator PadR-like family DOE78_04885 PF03831 PhnA domain DOE78_04885 PF08274 PhnA Zinc-Ribbon DOE78_04895 PF00313 'Cold-shock' DNA-binding domain DOE78_04900 PF12729 Four helix bundle sensory module for signal transduction DOE78_04900 PF00672 HAMP domain DOE78_04900 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE78_04925 PF00909 Ammonium Transporter Family DOE78_04955 PF00106 short chain dehydrogenase DOE78_04960 PF01380 SIS domain DOE78_04965 PF01547 Bacterial extracellular solute-binding protein DOE78_04970 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_04975 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_04980 PF00294 pfkB family carbohydrate kinase DOE78_04985 PF00392 Bacterial regulatory proteins, gntR family DOE78_04985 PF07702 UTRA domain DOE78_04990 PF07690 Major Facilitator Superfamily DOE78_04995 PF04324 BFD-like [2Fe-2S] binding domain DOE78_04995 PF18267 Rubredoxin NAD+ reductase C-terminal domain DOE78_04995 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE78_04995 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DOE78_04995 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DOE78_05000 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DOE78_05000 PF00384 Molybdopterin oxidoreductase DOE78_05000 PF01568 Molydopterin dinucleotide binding domain DOE78_05005 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DOE78_05005 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE78_05005 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DOE78_05005 PF18267 Rubredoxin NAD+ reductase C-terminal domain DOE78_05005 PF04324 BFD-like [2Fe-2S] binding domain DOE78_05010 PF00355 Rieske [2Fe-2S] domain DOE78_05025 PF01546 Peptidase family M20/M25/M40 DOE78_05025 PF07687 Peptidase dimerisation domain DOE78_05035 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DOE78_05035 PF13378 Enolase C-terminal domain-like DOE78_05045 PF09962 Uncharacterized conserved protein (DUF2196) DOE78_05055 PF01654 Cytochrome bd terminal oxidase subunit I DOE78_05060 PF02322 Cytochrome bd terminal oxidase subunit II DOE78_05065 PF00005 ABC transporter DOE78_05065 PF00664 ABC transporter transmembrane region DOE78_05070 PF00664 ABC transporter transmembrane region DOE78_05070 PF00005 ABC transporter DOE78_05080 PF02743 Cache domain DOE78_05080 PF00672 HAMP domain DOE78_05080 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE78_05085 PF11700 Vacuole effluxer Atg22 like DOE78_05095 PF05547 Immune inhibitor A peptidase M6 DOE78_05095 PF00801 PKD domain DOE78_05100 PF01546 Peptidase family M20/M25/M40 DOE78_05100 PF07687 Peptidase dimerisation domain DOE78_05115 PF08338 Domain of unknown function (DUF1731) DOE78_05115 PF01370 NAD dependent epimerase/dehydratase family DOE78_05120 PF02631 RecX family DOE78_05125 PF00106 short chain dehydrogenase DOE78_05130 PF08838 Protein of unknown function (DUF1811) DOE78_05135 PF08176 Small acid-soluble spore protein K family DOE78_05140 PF14043 WVELL protein DOE78_05145 PF04307 LexA-binding, inner membrane-associated putative hydrolase DOE78_05150 PF00730 HhH-GPD superfamily base excision DNA repair protein DOE78_05150 PF14815 NUDIX domain DOE78_05165 PF04259 Small, acid-soluble spore protein, gamma-type DOE78_05170 PF14182 YgaB-like protein DOE78_05175 PF04167 Protein of unknown function (DUF402) DOE78_05180 PF00005 ABC transporter DOE78_05180 PF00664 ABC transporter transmembrane region DOE78_05185 PF00005 ABC transporter DOE78_05185 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DOE78_05190 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DOE78_05190 PF00005 ABC transporter DOE78_05195 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DOE78_05210 PF06081 Aromatic acid exporter family member 1 DOE78_05215 PF00310 Glutamine amidotransferases class-II DOE78_05215 PF01493 GXGXG motif DOE78_05215 PF04898 Glutamate synthase central domain DOE78_05215 PF01645 Conserved region in glutamate synthase DOE78_05220 PF00202 Aminotransferase class-III DOE78_05225 PF00005 ABC transporter DOE78_05240 PF07885 Ion channel DOE78_05245 PF00578 AhpC/TSA family DOE78_05250 PF01923 Cobalamin adenosyltransferase DOE78_05255 PF01475 Ferric uptake regulator family DOE78_05260 PF11023 Zinc-ribbon containing domain DOE78_05265 PF14540 Nucleotidyltransferase-like DOE78_05265 PF18576 Helix-turn-helix domain DOE78_05365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_05365 PF00512 His Kinase A (phospho-acceptor) domain DOE78_05375 PF01638 HxlR-like helix-turn-helix DOE78_05380 PF07690 Major Facilitator Superfamily DOE78_05385 PF00248 Aldo/keto reductase family DOE78_05395 PF08331 Domain of unknown function (DUF1730) DOE78_05400 PF12671 Putative amidase domain DOE78_05405 PF00588 SpoU rRNA Methylase family DOE78_05410 PF00881 Nitroreductase family DOE78_05415 PF08298 PrkA AAA domain DOE78_05415 PF06798 PrkA serine protein kinase C-terminal domain DOE78_05435 PF00072 Response regulator receiver domain DOE78_05435 PF01966 HD domain DOE78_05445 PF00149 Calcineurin-like phosphoesterase DOE78_05455 PF02602 Uroporphyrinogen-III synthase HemD DOE78_05460 PF00293 NUDIX domain DOE78_05465 PF00196 Bacterial regulatory proteins, luxR family DOE78_05465 PF00072 Response regulator receiver domain DOE78_05470 PF01740 STAS domain DOE78_05480 PF14748 Pyrroline-5-carboxylate reductase dimerisation DOE78_05480 PF03807 NADP oxidoreductase coenzyme F420-dependent DOE78_05485 PF00990 Diguanylate cyclase, GGDEF domain DOE78_05485 PF00072 Response regulator receiver domain DOE78_05495 PF00535 Glycosyl transferase family 2 DOE78_05505 PF00072 Response regulator receiver domain DOE78_05505 PF00486 Transcriptional regulatory protein, C terminal DOE78_05510 PF16736 Single Cache-like DOE78_05510 PF00989 PAS fold DOE78_05510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_05510 PF00512 His Kinase A (phospho-acceptor) domain DOE78_05515 PF01479 S4 domain DOE78_05515 PF00849 RNA pseudouridylate synthase DOE78_05520 PF17326 Family of unknown function (DUF5365) DOE78_05525 PF00085 Thioredoxin DOE78_05530 PF02600 Disulfide bond formation protein DsbB DOE78_05535 PF17932 Tetracyclin repressor-like, C-terminal domain DOE78_05535 PF00440 Bacterial regulatory proteins, tetR family DOE78_05540 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DOE78_05540 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DOE78_05540 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DOE78_05540 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DOE78_05545 PF14148 YhdB-like protein DOE78_05555 PF01476 LysM domain DOE78_05555 PF00246 Zinc carboxypeptidase DOE78_05565 PF04293 SpoVR like protein DOE78_05570 PF13529 Peptidase_C39 like family DOE78_05575 PF03741 Integral membrane protein TerC family DOE78_05680 PF00072 Response regulator receiver domain DOE78_05680 PF00486 Transcriptional regulatory protein, C terminal DOE78_05685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_05685 PF00672 HAMP domain DOE78_05685 PF00512 His Kinase A (phospho-acceptor) domain DOE78_05690 PF13180 PDZ domain DOE78_05710 PF01595 Cyclin M transmembrane N-terminal domain DOE78_05710 PF03471 Transporter associated domain DOE78_05710 PF00571 CBS domain DOE78_05715 PF13411 MerR HTH family regulatory protein DOE78_05720 PF00989 PAS fold DOE78_05720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_05720 PF00512 His Kinase A (phospho-acceptor) domain DOE78_05730 PF07664 Ferrous iron transport protein B C terminus DOE78_05730 PF07670 Nucleoside recognition DOE78_05730 PF02421 Ferrous iron transport protein B DOE78_05730 PF17910 FeoB cytosolic helical domain DOE78_05740 PF01381 Helix-turn-helix DOE78_05750 PF07690 Major Facilitator Superfamily DOE78_05755 PF00005 ABC transporter DOE78_05755 PF00664 ABC transporter transmembrane region DOE78_05760 PF00664 ABC transporter transmembrane region DOE78_05760 PF00005 ABC transporter DOE78_05765 PF00269 Small, acid-soluble spore proteins, alpha/beta type DOE78_05775 PF00005 ABC transporter DOE78_05775 PF03459 TOBE domain DOE78_05775 PF17912 MalK OB fold domain DOE78_05780 PF13556 PucR C-terminal helix-turn-helix domain DOE78_05785 PF02583 Metal-sensitive transcriptional repressor DOE78_05790 PF14398 YheC/D like ATP-grasp DOE78_05795 PF14398 YheC/D like ATP-grasp DOE78_05800 PF14398 YheC/D like ATP-grasp DOE78_05805 PF14398 YheC/D like ATP-grasp DOE78_05810 PF04286 Protein of unknown function (DUF445) DOE78_05815 PF06133 Control of competence regulator ComK, YlbF/YmcA DOE78_05825 PF04055 Radical SAM superfamily DOE78_05835 PF00378 Enoyl-CoA hydratase/isomerase DOE78_05840 PF00005 ABC transporter DOE78_05840 PF13732 Domain of unknown function (DUF4162) DOE78_05850 PF00149 Calcineurin-like phosphoesterase DOE78_05855 PF13514 AAA domain DOE78_05860 PF01966 HD domain DOE78_05870 PF05698 Bacterial trigger factor protein (TF) C-terminus DOE78_05880 PF09680 Family of unknown function DOE78_05900 PF01047 MarR family DOE78_05915 PF17099 Tryptophan transporter TrpP DOE78_05920 PF00266 Aminotransferase class-V DOE78_05925 PF01230 HIT domain DOE78_05930 PF00005 ABC transporter DOE78_05935 PF05975 Bacterial ABC transporter protein EcsB DOE78_05945 PF12787 EcsC protein family DOE78_05950 PF01546 Peptidase family M20/M25/M40 DOE78_05950 PF07687 Peptidase dimerisation domain DOE78_05955 PF10282 Lactonase, 7-bladed beta-propeller DOE78_05960 PF08279 HTH domain DOE78_05960 PF05043 Mga helix-turn-helix domain DOE78_05960 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DOE78_05960 PF00874 PRD domain DOE78_05965 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DOE78_05970 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DOE78_05975 PF02378 Phosphotransferase system, EIIC DOE78_05980 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit DOE78_05985 PF00232 Glycosyl hydrolase family 1 DOE78_05990 PF00381 PTS HPr component phosphorylation site DOE78_06010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_06010 PF00672 HAMP domain DOE78_06010 PF07730 Histidine kinase DOE78_06015 PF00072 Response regulator receiver domain DOE78_06015 PF00196 Bacterial regulatory proteins, luxR family DOE78_06020 PF03992 Antibiotic biosynthesis monooxygenase DOE78_06025 PF01208 Uroporphyrinogen decarboxylase (URO-D) DOE78_06040 PF17932 Tetracyclin repressor-like, C-terminal domain DOE78_06040 PF00440 Bacterial regulatory proteins, tetR family DOE78_06050 PF14149 YhfH-like protein DOE78_06055 PF12706 Beta-lactamase superfamily domain DOE78_06060 PF03099 Biotin/lipoate A/B protein ligase family DOE78_06060 PF10437 Bacterial lipoate protein ligase C-terminus DOE78_06065 PF16363 GDP-mannose 4,6 dehydratase DOE78_06070 PF07875 Coat F domain DOE78_06080 PF13193 AMP-binding enzyme C-terminal domain DOE78_06080 PF00501 AMP-binding enzyme DOE78_06085 PF00378 Enoyl-CoA hydratase/isomerase DOE78_06100 PF09383 NIL domain DOE78_06100 PF00005 ABC transporter DOE78_06105 PF03591 AzlC protein DOE78_06115 PF01435 Peptidase family M48 DOE78_06115 PF16491 CAAX prenyl protease N-terminal, five membrane helices DOE78_06120 PF08858 IDEAL domain DOE78_06125 PF06338 ComK protein DOE78_06135 PF07676 WD40-like Beta Propeller Repeat DOE78_06135 PF00326 Prolyl oligopeptidase family DOE78_06140 PF09335 SNARE associated Golgi protein DOE78_06150 PF00561 alpha/beta hydrolase fold DOE78_06155 PF00455 DeoR C terminal sensor domain DOE78_06155 PF08220 DeoR-like helix-turn-helix domain DOE78_06165 PF12705 PD-(D/E)XK nuclease superfamily DOE78_06170 PF12705 PD-(D/E)XK nuclease superfamily DOE78_06170 PF00580 UvrD/REP helicase N-terminal domain DOE78_06170 PF13361 UvrD-like helicase C-terminal domain DOE78_06180 PF10676 Spore germination protein gerPA/gerPF DOE78_06195 PF10737 Spore germination protein GerPC DOE78_06200 PF10803 Spore germination GerPB DOE78_06205 PF10676 Spore germination protein gerPA/gerPF DOE78_06210 PF13193 AMP-binding enzyme C-terminal domain DOE78_06210 PF00501 AMP-binding enzyme DOE78_06215 PF04235 Protein of unknown function (DUF418) DOE78_06220 PF01557 Fumarylacetoacetate (FAA) hydrolase family DOE78_06225 PF07457 Protein of unknown function (DUF1516) DOE78_06235 PF00733 Asparagine synthase DOE78_06235 PF13537 Glutamine amidotransferase domain DOE78_06240 PF01593 Flavin containing amine oxidoreductase DOE78_06255 PF01554 MatE DOE78_06260 PF16657 Maltogenic Amylase, C-terminal domain DOE78_06260 PF02903 Alpha amylase, N-terminal ig-like domain DOE78_06260 PF00128 Alpha amylase, catalytic domain DOE78_06265 PF13416 Bacterial extracellular solute-binding protein DOE78_06270 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_06275 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_06280 PF16657 Maltogenic Amylase, C-terminal domain DOE78_06280 PF00128 Alpha amylase, catalytic domain DOE78_06280 PF02903 Alpha amylase, N-terminal ig-like domain DOE78_06285 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DOE78_06285 PF00356 Bacterial regulatory proteins, lacI family DOE78_06295 PF00682 HMGL-like DOE78_06295 PF07836 DmpG-like communication domain DOE78_06300 PF07690 Major Facilitator Superfamily DOE78_06305 PF10057 Uncharacterized conserved protein (DUF2294) DOE78_06310 PF12838 4Fe-4S dicluster domain DOE78_06310 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DOE78_06310 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region DOE78_06310 PF01568 Molydopterin dinucleotide binding domain DOE78_06310 PF00384 Molybdopterin oxidoreductase DOE78_06315 PF02634 FdhD/NarQ family DOE78_06320 PF01810 LysE type translocator DOE78_06335 PF03466 LysR substrate binding domain DOE78_06335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE78_06340 PF00106 short chain dehydrogenase DOE78_06345 PF07690 Major Facilitator Superfamily DOE78_06355 PF02589 LUD domain DOE78_06360 PF02589 LUD domain DOE78_06360 PF13183 4Fe-4S dicluster domain DOE78_06360 PF11870 Domain of unknown function (DUF3390) DOE78_06365 PF02754 Cysteine-rich domain DOE78_06370 PF00392 Bacterial regulatory proteins, gntR family DOE78_06370 PF07729 FCD domain DOE78_06375 PF04461 Protein of unknown function (DUF520) DOE78_06380 PF13509 S1 domain DOE78_06380 PF17783 CvfB-like winged helix domain DOE78_06390 PF02645 Uncharacterised protein, DegV family COG1307 DOE78_06395 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DOE78_06395 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DOE78_06405 PF12758 Protein of unknown function (DUF3813) DOE78_06415 PF00326 Prolyl oligopeptidase family DOE78_06420 PF01883 Iron-sulfur cluster assembly protein DOE78_06425 PF13186 Iron-sulfur cluster-binding domain DOE78_06425 PF04055 Radical SAM superfamily DOE78_06430 PF00027 Cyclic nucleotide-binding domain DOE78_06430 PF00325 Bacterial regulatory proteins, crp family DOE78_06435 PF04055 Radical SAM superfamily DOE78_06435 PF06463 Molybdenum Cofactor Synthesis C DOE78_06440 PF04405 Domain of Unknown function (DUF542) DOE78_06440 PF01814 Hemerythrin HHE cation binding domain DOE78_06445 PF03453 MoeA N-terminal region (domain I and II) DOE78_06445 PF03454 MoeA C-terminal region (domain IV) DOE78_06445 PF00994 Probable molybdopterin binding domain DOE78_06450 PF03205 Molybdopterin guanine dinucleotide synthesis protein B DOE78_06455 PF14256 YwiC-like protein DOE78_06460 PF00027 Cyclic nucleotide-binding domain DOE78_06460 PF00325 Bacterial regulatory proteins, crp family DOE78_06465 PF02774 Semialdehyde dehydrogenase, dimerisation domain DOE78_06465 PF01118 Semialdehyde dehydrogenase, NAD binding domain DOE78_06470 PF01960 ArgJ family DOE78_06475 PF00696 Amino acid kinase family DOE78_06480 PF00202 Aminotransferase class-III DOE78_06485 PF00117 Glutamine amidotransferase class-I DOE78_06485 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DOE78_06490 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DOE78_06490 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DOE78_06495 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DOE78_06495 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DOE78_06500 PF14168 YjzC-like protein DOE78_06505 PF17871 AAA lid domain DOE78_06505 PF10431 C-terminal, D2-small domain, of ClpB protein DOE78_06505 PF00004 ATPase family associated with various cellular activities (AAA) DOE78_06505 PF02861 Clp amino terminal domain, pathogenicity island component DOE78_06505 PF07724 AAA domain (Cdc48 subfamily) DOE78_06525 PF02608 ABC transporter substrate-binding protein PnrA-like DOE78_06530 PF10815 ComZ DOE78_06540 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DOE78_06540 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DOE78_06545 PF00109 Beta-ketoacyl synthase, N-terminal domain DOE78_06545 PF02801 Beta-ketoacyl synthase, C-terminal domain DOE78_06550 PF10026 Predicted Zn-dependent protease (DUF2268) DOE78_06555 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DOE78_06555 PF00005 ABC transporter DOE78_06560 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DOE78_06560 PF00005 ABC transporter DOE78_06565 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DOE78_06570 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_06575 PF12911 N-terminal TM domain of oligopeptide transport permease C DOE78_06575 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_06585 PF12227 Protein of unknown function (DUF3603) DOE78_06590 PF00579 tRNA synthetases class I (W and Y) DOE78_06600 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DOE78_06605 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_06610 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_06610 PF12911 N-terminal TM domain of oligopeptide transport permease C DOE78_06615 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DOE78_06615 PF00005 ABC transporter DOE78_06620 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DOE78_06620 PF00005 ABC transporter DOE78_06630 PF13508 Acetyltransferase (GNAT) domain DOE78_06635 PF03960 ArsC family DOE78_06640 PF05389 Negative regulator of genetic competence (MecA) DOE78_06645 PF13091 PLD-like domain DOE78_06645 PF13396 Phospholipase_D-nuclease N-terminal DOE78_06655 PF01432 Peptidase family M3 DOE78_06655 PF08439 Oligopeptidase F DOE78_06665 PF01152 Bacterial-like globin DOE78_06670 PF01464 Transglycosylase SLT domain DOE78_06675 PF01928 CYTH domain DOE78_06685 PF04607 Region found in RelA / SpoT proteins DOE78_06690 PF01513 ATP-NAD kinase DOE78_06695 PF00849 RNA pseudouridylate synthase DOE78_06700 PF00149 Calcineurin-like phosphoesterase DOE78_06705 PF03448 MgtE intracellular N domain DOE78_06705 PF01769 Divalent cation transporter DOE78_06705 PF00571 CBS domain DOE78_06710 PF02080 TrkA-C domain DOE78_06710 PF02254 TrkA-N domain DOE78_06710 PF00999 Sodium/hydrogen exchanger family DOE78_06720 PF12792 CSS motif domain associated with EAL DOE78_06720 PF00563 EAL domain DOE78_06730 PF03862 SpoVAC/SpoVAEB sporulation membrane protein DOE78_06735 PF07451 Stage V sporulation protein AD (SpoVAD) DOE78_06740 PF03862 SpoVAC/SpoVAEB sporulation membrane protein DOE78_06750 PF14069 Stage VI sporulation protein F DOE78_06755 PF13361 UvrD-like helicase C-terminal domain DOE78_06755 PF00580 UvrD/REP helicase N-terminal domain DOE78_06765 PF13673 Acetyltransferase (GNAT) domain DOE78_06775 PF00756 Putative esterase DOE78_06780 PF16868 NMT1-like family DOE78_06800 PF13217 Protein of unknown function (DUF4025) DOE78_06805 PF01475 Ferric uptake regulator family DOE78_06810 PF18801 response regulator aspartate phosphatase H, N terminal DOE78_06815 PF00082 Subtilase family DOE78_06835 PF03006 Haemolysin-III related DOE78_06845 PF00909 Ammonium Transporter Family DOE78_06855 PF02811 PHP domain DOE78_06855 PF00929 Exonuclease DOE78_06855 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DOE78_06855 PF07733 Bacterial DNA polymerase III alpha NTPase domain DOE78_06855 PF11490 DNA polymerase III polC-type N-terminus II DOE78_06855 PF14480 DNA polymerase III polC-type N-terminus I DOE78_06860 PF03447 Homoserine dehydrogenase, NAD binding domain DOE78_06860 PF00742 Homoserine dehydrogenase DOE78_06860 PF01842 ACT domain DOE78_06870 PF13823 Alcohol dehydrogenase GroES-associated DOE78_06870 PF08240 Alcohol dehydrogenase GroES-like domain DOE78_06870 PF00107 Zinc-binding dehydrogenase DOE78_06905 PF01026 TatD related DNase DOE78_06910 PF00005 ABC transporter DOE78_06915 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_06920 PF01910 Thiamine-binding protein DOE78_06925 PF09084 NMT1/THI5 like DOE78_06930 PF00009 Elongation factor Tu GTP binding domain DOE78_06930 PF03144 Elongation factor Tu domain 2 DOE78_06930 PF16658 Class II release factor RF3, C-terminal domain DOE78_06935 PF00990 Diguanylate cyclase, GGDEF domain DOE78_06935 PF00563 EAL domain DOE78_06935 PF00360 Phytochrome region DOE78_06935 PF01590 GAF domain DOE78_06940 PF00873 AcrB/AcrD/AcrF family DOE78_06955 PF04542 Sigma-70 region 2 DOE78_06960 PF12791 Anti-sigma factor N-terminus DOE78_06965 PF00269 Small, acid-soluble spore proteins, alpha/beta type DOE78_06980 PF01757 Acyltransferase family DOE78_06985 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase DOE78_06990 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II DOE78_06990 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg DOE78_06995 PF12729 Four helix bundle sensory module for signal transduction DOE78_06995 PF00672 HAMP domain DOE78_06995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE78_07000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_07000 PF13426 PAS domain DOE78_07000 PF13188 PAS domain DOE78_07000 PF00989 PAS fold DOE78_07000 PF00512 His Kinase A (phospho-acceptor) domain DOE78_07005 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain DOE78_07005 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DOE78_07010 PF01636 Phosphotransferase enzyme family DOE78_07015 PF00795 Carbon-nitrogen hydrolase DOE78_07020 PF00155 Aminotransferase class I and II DOE78_07025 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain DOE78_07025 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain DOE78_07035 PF00596 Class II Aldolase and Adducin N-terminal domain DOE78_07040 PF03079 ARD/ARD' family DOE78_07050 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DOE78_07050 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DOE78_07055 PF02535 ZIP Zinc transporter DOE78_07060 PF01012 Electron transfer flavoprotein domain DOE78_07065 PF01012 Electron transfer flavoprotein domain DOE78_07065 PF00766 Electron transfer flavoprotein FAD-binding domain DOE78_07090 PF04405 Domain of Unknown function (DUF542) DOE78_07090 PF01814 Hemerythrin HHE cation binding domain DOE78_07095 PF07690 Major Facilitator Superfamily DOE78_07100 PF01636 Phosphotransferase enzyme family DOE78_07105 PF00512 His Kinase A (phospho-acceptor) domain DOE78_07105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_07105 PF02743 Cache domain DOE78_07110 PF01047 MarR family DOE78_07120 PF00004 ATPase family associated with various cellular activities (AAA) DOE78_07120 PF07724 AAA domain (Cdc48 subfamily) DOE78_07120 PF17871 AAA lid domain DOE78_07120 PF10431 C-terminal, D2-small domain, of ClpB protein DOE78_07145 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) DOE78_07165 PF00381 PTS HPr component phosphorylation site DOE78_07170 PF00391 PEP-utilising enzyme, mobile domain DOE78_07170 PF02896 PEP-utilising enzyme, TIM barrel domain DOE78_07170 PF05524 PEP-utilising enzyme, N-terminal DOE78_07185 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DOE78_07185 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DOE78_07190 PF00155 Aminotransferase class I and II DOE78_07200 PF00072 Response regulator receiver domain DOE78_07200 PF01584 CheW-like domain DOE78_07205 PF14177 YkyB-like protein DOE78_07210 PF02541 Ppx/GppA phosphatase family DOE78_07215 PF13089 Polyphosphate kinase N-terminal domain DOE78_07215 PF02503 Polyphosphate kinase middle domain DOE78_07215 PF13090 Polyphosphate kinase C-terminal domain 2 DOE78_07215 PF17941 Polyphosphate kinase C-terminal domain 1 DOE78_07220 PF03707 Bacterial signalling protein N terminal repeat DOE78_07220 PF00990 Diguanylate cyclase, GGDEF domain DOE78_07220 PF00563 EAL domain DOE78_07225 PF00149 Calcineurin-like phosphoesterase DOE78_07225 PF10518 TAT (twin-arginine translocation) pathway signal sequence DOE78_07235 PF13529 Peptidase_C39 like family DOE78_07240 PF10388 EAL-domain associated signalling protein domain DOE78_07240 PF00563 EAL domain DOE78_07260 PF00753 Metallo-beta-lactamase superfamily DOE78_07265 PF08796 Protein of unknown function (DUF1797) DOE78_07275 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE78_07275 PF03466 LysR substrate binding domain DOE78_07280 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal DOE78_07280 PF00132 Bacterial transferase hexapeptide (six repeats) DOE78_07280 PF14602 Hexapeptide repeat of succinyl-transferase DOE78_07285 PF01546 Peptidase family M20/M25/M40 DOE78_07285 PF07687 Peptidase dimerisation domain DOE78_07290 PF00578 AhpC/TSA family DOE78_07290 PF10417 C-terminal domain of 1-Cys peroxiredoxin DOE78_07295 PF00578 AhpC/TSA family DOE78_07300 PF00005 ABC transporter DOE78_07300 PF00664 ABC transporter transmembrane region DOE78_07305 PF00664 ABC transporter transmembrane region DOE78_07305 PF00005 ABC transporter DOE78_07310 PF02254 TrkA-N domain DOE78_07310 PF02080 TrkA-C domain DOE78_07315 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DOE78_07315 PF17770 Ribonuclease J C-terminal domain DOE78_07315 PF00753 Metallo-beta-lactamase superfamily DOE78_07325 PF01327 Polypeptide deformylase DOE78_07335 PF00676 Dehydrogenase E1 component DOE78_07340 PF02780 Transketolase, C-terminal domain DOE78_07340 PF02779 Transketolase, pyrimidine binding domain DOE78_07345 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DOE78_07345 PF02817 e3 binding domain DOE78_07345 PF00364 Biotin-requiring enzyme DOE78_07350 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE78_07350 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DOE78_07380 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain DOE78_07380 PF01276 Orn/Lys/Arg decarboxylase, major domain DOE78_07385 PF05256 Uncharacterised protein family (UPF0223) DOE78_07390 PF06335 Protein of unknown function (DUF1054) DOE78_07400 PF00459 Inositol monophosphatase family DOE78_07405 PF00583 Acetyltransferase (GNAT) family DOE78_07420 PF14036 YlaH-like protein DOE78_07430 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) DOE78_07440 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) DOE78_07445 PF02562 PhoH-like protein DOE78_07445 PF13638 PIN domain DOE78_07455 PF07408 Protein of unknown function (DUF1507) DOE78_07460 PF01098 Cell cycle protein DOE78_07465 PF00682 HMGL-like DOE78_07465 PF00289 Biotin carboxylase, N-terminal domain DOE78_07465 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DOE78_07465 PF00364 Biotin-requiring enzyme DOE78_07465 PF02436 Conserved carboxylase domain DOE78_07465 PF02785 Biotin carboxylase C-terminal domain DOE78_07470 PF02628 Cytochrome oxidase assembly protein DOE78_07475 PF01040 UbiA prenyltransferase family DOE78_07480 PF00034 Cytochrome c DOE78_07480 PF02790 Cytochrome C oxidase subunit II, transmembrane domain DOE78_07480 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DOE78_07485 PF00115 Cytochrome C and Quinol oxidase polypeptide I DOE78_07490 PF00510 Cytochrome c oxidase subunit III DOE78_07495 PF03626 Prokaryotic Cytochrome C oxidase subunit IV DOE78_07500 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) DOE78_07525 PF08868 YugN-like family DOE78_07530 PF00571 CBS domain DOE78_07535 PF00188 Cysteine-rich secretory protein family DOE78_07535 PF14504 CAP-associated N-terminal DOE78_07550 PF14071 Putative coat protein DOE78_07555 PF14003 YlbE-like protein DOE78_07565 PF06133 Control of competence regulator ComK, YlbF/YmcA DOE78_07570 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) DOE78_07590 PF01467 Cytidylyltransferase-like DOE78_07595 PF07670 Nucleoside recognition DOE78_07600 PF01734 Patatin-like phospholipase DOE78_07605 PF05362 Lon protease (S16) C-terminal proteolytic domain DOE78_07605 PF13180 PDZ domain DOE78_07610 PF05636 HIGH Nucleotidyl Transferase DOE78_07615 PF02620 Large ribosomal RNA subunit accumulation protein YceD DOE78_07620 PF01783 Ribosomal L32p protein family DOE78_07625 PF00378 Enoyl-CoA hydratase/isomerase DOE78_07635 PF00583 Acetyltransferase (GNAT) family DOE78_07640 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DOE78_07640 PF00289 Biotin carboxylase, N-terminal domain DOE78_07640 PF02785 Biotin carboxylase C-terminal domain DOE78_07645 PF00364 Biotin-requiring enzyme DOE78_07650 PF01039 Carboxyl transferase domain DOE78_07655 PF02558 Ketopantoate reductase PanE/ApbA DOE78_07655 PF08546 Ketopantoate reductase PanE/ApbA C terminal DOE78_07665 PF10079 Bacillithiol biosynthesis BshC DOE78_07675 PF02381 MraZ protein, putative antitoxin-like DOE78_07680 PF01795 MraW methylase family DOE78_07685 PF04977 Septum formation initiator DOE78_07695 PF00905 Penicillin binding protein transpeptidase domain DOE78_07695 PF03793 PASTA domain DOE78_07695 PF03717 Penicillin-binding Protein dimerisation domain DOE78_07700 PF02875 Mur ligase family, glutamate ligase domain DOE78_07700 PF08245 Mur ligase middle domain DOE78_07700 PF01225 Mur ligase family, catalytic domain DOE78_07705 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 DOE78_07705 PF00953 Glycosyl transferase family 4 DOE78_07710 PF08245 Mur ligase middle domain DOE78_07710 PF02875 Mur ligase family, glutamate ligase domain DOE78_07715 PF01098 Cell cycle protein DOE78_07720 PF04101 Glycosyltransferase family 28 C-terminal domain DOE78_07720 PF03033 Glycosyltransferase family 28 N-terminal domain DOE78_07725 PF01565 FAD binding domain DOE78_07725 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain DOE78_07730 PF08478 POTRA domain, FtsQ-type DOE78_07735 PF05949 Bacterial protein of unknown function (DUF881) DOE78_07740 PF05949 Bacterial protein of unknown function (DUF881) DOE78_07745 PF06947 Protein of unknown function (DUF1290) DOE78_07750 PF02491 SHS2 domain inserted in FTSA DOE78_07755 PF12327 FtsZ family, C-terminal domain DOE78_07755 PF00091 Tubulin/FtsZ family, GTPase domain DOE78_07760 PF03419 Sporulation factor SpoIIGA DOE78_07765 PF04542 Sigma-70 region 2 DOE78_07765 PF04545 Sigma-70, region 4 DOE78_07770 PF04545 Sigma-70, region 4 DOE78_07770 PF04542 Sigma-70 region 2 DOE78_07770 PF04539 Sigma-70 region 3 DOE78_07775 PF05239 PRC-barrel domain DOE78_07785 PF01168 Alanine racemase, N-terminal domain DOE78_07790 PF04472 Cell division protein SepF DOE78_07795 PF02325 YGGT family DOE78_07800 PF01479 S4 domain DOE78_07800 PF17774 Putative RNA-binding domain in YlmH DOE78_07805 PF05103 DivIVA protein DOE78_07810 PF08264 Anticodon-binding domain of tRNA DOE78_07810 PF00133 tRNA synthetases class I (I, L, M and V) DOE78_07810 PF06827 Zinc finger found in FPG and IleRS DOE78_07815 PF01258 Prokaryotic dksA/traR C4-type zinc finger DOE78_07820 PF01252 Signal peptidase (SPase) II DOE78_07825 PF01479 S4 domain DOE78_07825 PF00849 RNA pseudouridylate synthase DOE78_07830 PF00156 Phosphoribosyl transferase domain DOE78_07835 PF00860 Permease family DOE78_07840 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain DOE78_07840 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain DOE78_07845 PF01979 Amidohydrolase family DOE78_07850 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain DOE78_07850 PF00117 Glutamine amidotransferase class-I DOE78_07855 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DOE78_07855 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DOE78_07855 PF02142 MGS-like domain DOE78_07860 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B DOE78_07860 PF00970 Oxidoreductase FAD-binding domain DOE78_07865 PF01180 Dihydroorotate dehydrogenase DOE78_07870 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family DOE78_07875 PF00156 Phosphoribosyl transferase domain DOE78_07885 PF00690 Cation transporter/ATPase, N-terminus DOE78_07885 PF00689 Cation transporting ATPase, C-terminus DOE78_07890 PF08340 Domain of unknown function (DUF1732) DOE78_07890 PF03755 YicC-like family, N-terminal region DOE78_07895 PF04025 Domain of unknown function (DUF370) DOE78_07900 PF00625 Guanylate kinase DOE78_07905 PF01192 RNA polymerase Rpb6 DOE78_07910 PF04127 DNA / pantothenate metabolism flavoprotein DOE78_07910 PF02441 Flavoprotein DOE78_07915 PF00271 Helicase conserved C-terminal domain DOE78_07915 PF17764 3′ DNA-binding domain (3′BD) DOE78_07915 PF18074 Primosomal protein N C-terminal domain DOE78_07915 PF04851 Type III restriction enzyme, res subunit DOE78_07915 PF18319 PriA DNA helicase Cys-rich region (CRR) domain DOE78_07920 PF01327 Polypeptide deformylase DOE78_07925 PF02911 Formyl transferase, C-terminal domain DOE78_07925 PF00551 Formyl transferase DOE78_07930 PF01029 NusB family DOE78_07930 PF01189 16S rRNA methyltransferase RsmB/F DOE78_07935 PF04055 Radical SAM superfamily DOE78_07945 PF00069 Protein kinase domain DOE78_07945 PF03793 PASTA domain DOE78_07950 PF16745 RsgA N-terminal domain DOE78_07950 PF03193 RsgA GTPase DOE78_07955 PF00834 Ribulose-phosphate 3 epimerase family DOE78_07960 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain DOE78_07960 PF04263 Thiamin pyrophosphokinase, catalytic domain DOE78_07965 PF08183 Stage V sporulation protein family DOE78_07970 PF00830 Ribosomal L28 family DOE78_07975 PF03780 Asp23 family, cell envelope-related function DOE78_07980 PF13684 Dihydroxyacetone kinase family DOE78_07980 PF02734 DAK2 domain DOE78_07985 PF01842 ACT domain DOE78_07985 PF03315 Serine dehydratase beta chain DOE78_07990 PF03313 Serine dehydratase alpha chain DOE78_07995 PF00270 DEAD/DEAH box helicase DOE78_07995 PF17191 RecG wedge domain DOE78_07995 PF00271 Helicase conserved C-terminal domain DOE78_08000 PF01575 MaoC like domain DOE78_08000 PF08279 HTH domain DOE78_08005 PF02504 Fatty acid synthesis protein DOE78_08010 PF00698 Acyl transferase domain DOE78_08020 PF00550 Phosphopantetheine attachment site DOE78_08030 PF06470 SMC proteins Flexible Hinge Domain DOE78_08030 PF02463 RecF/RecN/SMC N terminal domain DOE78_08035 PF02881 SRP54-type protein, helical bundle domain DOE78_08035 PF00448 SRP54-type protein, GTPase domain DOE78_08040 PF04297 Putative helix-turn-helix protein, YlxM / p13 like DOE78_08045 PF02881 SRP54-type protein, helical bundle domain DOE78_08045 PF02978 Signal peptide binding domain DOE78_08045 PF00448 SRP54-type protein, GTPase domain DOE78_08050 PF00886 Ribosomal protein S16 DOE78_08060 PF11068 YlqD protein DOE78_08065 PF01782 RimM N-terminal domain DOE78_08065 PF05239 PRC-barrel domain DOE78_08070 PF01746 tRNA (Guanine-1)-methyltransferase DOE78_08075 PF01245 Ribosomal protein L19 DOE78_08080 PF10502 Signal peptidase, peptidase S26 DOE78_08085 PF01926 50S ribosome-binding GTPase DOE78_08090 PF01351 Ribonuclease HII DOE78_08100 PF01312 FlhB HrpN YscU SpaS Family DOE78_08105 PF08442 ATP-grasp domain DOE78_08105 PF00549 CoA-ligase DOE78_08110 PF02629 CoA binding domain DOE78_08110 PF00549 CoA-ligase DOE78_08115 PF02481 DNA recombination-mediator protein A DOE78_08120 PF01131 DNA topoisomerase DOE78_08120 PF01396 Topoisomerase DNA binding C4 zinc finger DOE78_08120 PF01751 Toprim domain DOE78_08125 PF01134 Glucose inhibited division protein A DOE78_08130 PF02899 Phage integrase, N-terminal SAM-like domain DOE78_08130 PF00589 Phage integrase family DOE78_08135 PF00227 Proteasome subunit DOE78_08140 PF00004 ATPase family associated with various cellular activities (AAA) DOE78_08140 PF10431 C-terminal, D2-small domain, of ClpB protein DOE78_08140 PF07724 AAA domain (Cdc48 subfamily) DOE78_08145 PF06018 CodY GAF-like domain DOE78_08145 PF08222 CodY helix-turn-helix domain DOE78_08150 PF00460 Flagella basal body rod protein DOE78_08155 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DOE78_08155 PF00460 Flagella basal body rod protein DOE78_08160 PF02049 Flagellar hook-basal body complex protein FliE DOE78_08165 PF08345 Flagellar M-ring protein C-terminal DOE78_08165 PF01514 Secretory protein of YscJ/FliF family DOE78_08170 PF14842 FliG N-terminal domain DOE78_08170 PF01706 FliG C-terminal domain DOE78_08170 PF14841 FliG middle domain DOE78_08175 PF02108 Flagellar assembly protein FliH DOE78_08180 PF02874 ATP synthase alpha/beta family, beta-barrel domain DOE78_08180 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DOE78_08180 PF18269 T3SS EscN ATPase C-terminal domain DOE78_08185 PF02050 Flagellar FliJ protein DOE78_08200 PF03963 Flagellar hook capping protein - N-terminal region DOE78_08210 PF00460 Flagella basal body rod protein DOE78_08210 PF07559 Flagellar basal body protein FlaE DOE78_08210 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DOE78_08215 PF06289 Flagellar and Swarming motility proteins DOE78_08220 PF03748 Flagellar basal body-associated protein FliL DOE78_08225 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DOE78_08225 PF02154 Flagellar motor switch protein FliM DOE78_08230 PF04509 CheC-like family DOE78_08230 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term DOE78_08235 PF00072 Response regulator receiver domain DOE78_08240 PF04347 Flagellar biosynthesis protein, FliO DOE78_08245 PF00813 FliP family DOE78_08250 PF01313 Bacterial export proteins, family 3 DOE78_08255 PF01311 Bacterial export proteins, family 1 DOE78_08260 PF01312 FlhB HrpN YscU SpaS Family DOE78_08265 PF00771 FHIPEP family DOE78_08270 PF00448 SRP54-type protein, GTPase domain DOE78_08275 PF10609 NUBPL iron-transfer P-loop NTPase DOE78_08280 PF00072 Response regulator receiver domain DOE78_08280 PF01339 CheB methylesterase DOE78_08285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_08285 PF02895 Signal transducing histidine kinase, homodimeric domain DOE78_08285 PF01627 Hpt domain DOE78_08285 PF07194 P2 response regulator binding domain DOE78_08285 PF01584 CheW-like domain DOE78_08290 PF01584 CheW-like domain DOE78_08295 PF04509 CheC-like family DOE78_08300 PF03975 CheD chemotactic sensory transduction DOE78_08305 PF04542 Sigma-70 region 2 DOE78_08305 PF04545 Sigma-70, region 4 DOE78_08305 PF04539 Sigma-70 region 3 DOE78_08320 PF00318 Ribosomal protein S2 DOE78_08325 PF00889 Elongation factor TS DOE78_08330 PF00696 Amino acid kinase family DOE78_08335 PF01765 Ribosome recycling factor DOE78_08340 PF01255 Putative undecaprenyl diphosphate synthase DOE78_08350 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain DOE78_08350 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase DOE78_08350 PF13288 DXP reductoisomerase C-terminal domain DOE78_08355 PF02163 Peptidase family M50 DOE78_08355 PF13180 PDZ domain DOE78_08360 PF04073 Aminoacyl-tRNA editing domain DOE78_08360 PF03129 Anticodon binding domain DOE78_08360 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DOE78_08365 PF14579 Helix-hairpin-helix motif DOE78_08365 PF07733 Bacterial DNA polymerase III alpha NTPase domain DOE78_08365 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DOE78_08365 PF11490 DNA polymerase III polC-type N-terminus II DOE78_08365 PF00929 Exonuclease DOE78_08365 PF02811 PHP domain DOE78_08365 PF14480 DNA polymerase III polC-type N-terminus I DOE78_08370 PF02576 RimP N-terminal domain DOE78_08370 PF17384 RimP C-terminal SH3 domain DOE78_08375 PF00575 S1 RNA binding domain DOE78_08375 PF08529 NusA N-terminal domain DOE78_08375 PF13184 NusA-like KH domain DOE78_08380 PF04296 Protein of unknown function (DUF448) DOE78_08385 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family DOE78_08390 PF11987 Translation-initiation factor 2 DOE78_08390 PF00009 Elongation factor Tu GTP binding domain DOE78_08390 PF04760 Translation initiation factor IF-2, N-terminal region DOE78_08395 PF04456 Protein of unknown function (DUF503) DOE78_08400 PF02033 Ribosome-binding factor A DOE78_08405 PF16198 tRNA pseudouridylate synthase B C-terminal domain DOE78_08405 PF01509 TruB family pseudouridylate synthase (N terminal domain) DOE78_08410 PF06574 FAD synthetase DOE78_08410 PF01687 Riboflavin kinase DOE78_08415 PF00312 Ribosomal protein S15 DOE78_08420 PF00013 KH domain DOE78_08420 PF01138 3' exoribonuclease family, domain 1 DOE78_08420 PF00575 S1 RNA binding domain DOE78_08420 PF03725 3' exoribonuclease family, domain 2 DOE78_08420 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain DOE78_08425 PF01522 Polysaccharide deacetylase DOE78_08430 PF05193 Peptidase M16 inactive domain DOE78_08430 PF00675 Insulinase (Peptidase family M16) DOE78_08435 PF05239 PRC-barrel domain DOE78_08440 PF16924 Dipicolinate synthase subunit A N-terminal domain DOE78_08440 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DOE78_08445 PF02441 Flavoprotein DOE78_08450 PF02774 Semialdehyde dehydrogenase, dimerisation domain DOE78_08450 PF01118 Semialdehyde dehydrogenase, NAD binding domain DOE78_08455 PF13840 ACT domain DOE78_08455 PF00696 Amino acid kinase family DOE78_08460 PF00701 Dihydrodipicolinate synthetase family DOE78_08465 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DOE78_08465 PF00753 Metallo-beta-lactamase superfamily DOE78_08465 PF17770 Ribonuclease J C-terminal domain DOE78_08470 PF00574 Clp protease DOE78_08480 PF17854 FtsK alpha domain DOE78_08480 PF09397 Ftsk gamma domain DOE78_08480 PF01580 FtsK/SpoIIIE family DOE78_08485 PF07702 UTRA domain DOE78_08485 PF00392 Bacterial regulatory proteins, gntR family DOE78_08510 PF00990 Diguanylate cyclase, GGDEF domain DOE78_08515 PF05193 Peptidase M16 inactive domain DOE78_08520 PF00675 Insulinase (Peptidase family M16) DOE78_08520 PF05193 Peptidase M16 inactive domain DOE78_08530 PF11588 Protein of unknown function (DUF3243) DOE78_08535 PF11868 Protein of unknown function (DUF3388) DOE78_08540 PF13464 Domain of unknown function (DUF4115) DOE78_08545 PF01066 CDP-alcohol phosphatidyltransferase DOE78_08550 PF18146 Damage-inducible protein CinA KH domain DOE78_08550 PF02464 Competence-damaged protein DOE78_08550 PF00994 Probable molybdopterin binding domain DOE78_08555 PF00154 recA bacterial DNA recombination protein DOE78_08560 PF12072 Domain of unknown function (DUF3552) DOE78_08560 PF00013 KH domain DOE78_08560 PF01966 HD domain DOE78_08565 PF13277 YmdB-like protein DOE78_08570 PF04232 Stage V sporulation protein S (SpoVS) DOE78_08575 PF01244 Membrane dipeptidase (Peptidase family M19) DOE78_08580 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II DOE78_08580 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase DOE78_08580 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg DOE78_08585 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DOE78_08590 PF04055 Radical SAM superfamily DOE78_08590 PF01938 TRAM domain DOE78_08590 PF00919 Uncharacterized protein family UPF0004 DOE78_08595 PF06133 Control of competence regulator ComK, YlbF/YmcA DOE78_08600 PF10628 Outer spore coat protein E (CotE) DOE78_08605 PF05188 MutS domain II DOE78_08605 PF01624 MutS domain I DOE78_08605 PF05190 MutS family domain IV DOE78_08605 PF00488 MutS domain V DOE78_08605 PF05192 MutS domain III DOE78_08610 PF01119 DNA mismatch repair protein, C-terminal domain DOE78_08610 PF08676 MutL C terminal dimerisation domain DOE78_08635 PF17209 Hfq protein DOE78_08640 PF00004 ATPase family associated with various cellular activities (AAA) DOE78_08640 PF17866 AAA lid domain DOE78_08645 PF01926 50S ribosome-binding GTPase DOE78_08645 PF13167 GTP-binding GTPase N-terminal DOE78_08645 PF16360 GTP-binding GTPase Middle Region DOE78_08650 PF06838 Methionine gamma-lyase DOE78_08655 PF13411 MerR HTH family regulatory protein DOE78_08660 PF00120 Glutamine synthetase, catalytic domain DOE78_08660 PF03951 Glutamine synthetase, beta-Grasp domain DOE78_08670 PF00717 Peptidase S24-like DOE78_08670 PF01726 LexA DNA binding domain DOE78_08675 PF01476 LysM domain DOE78_08680 PF00239 Resolvase, N terminal domain DOE78_08685 PF05979 Bacterial protein of unknown function (DUF896) DOE78_08690 PF02779 Transketolase, pyrimidine binding domain DOE78_08690 PF02780 Transketolase, C-terminal domain DOE78_08690 PF00456 Transketolase, thiamine diphosphate binding domain DOE78_08695 PF10747 Sporulation inhibitor of replication protein SirA DOE78_08710 PF00005 ABC transporter DOE78_08710 PF00664 ABC transporter transmembrane region DOE78_08715 PF00005 ABC transporter DOE78_08715 PF00664 ABC transporter transmembrane region DOE78_08725 PF02683 Cytochrome C biogenesis protein transmembrane region DOE78_08730 PF00072 Response regulator receiver domain DOE78_08735 PF07301 Protein of unknown function (DUF1453) DOE78_08740 PF11084 Protein of unknown function (DUF2621) DOE78_08750 PF00069 Protein kinase domain DOE78_08750 PF03793 PASTA domain DOE78_08755 PF00069 Protein kinase domain DOE78_08755 PF03793 PASTA domain DOE78_08760 PF03793 PASTA domain DOE78_08760 PF00069 Protein kinase domain DOE78_08775 PF13439 Glycosyltransferase Family 4 DOE78_08775 PF00534 Glycosyl transferases group 1 DOE78_08780 PF09296 NADH pyrophosphatase-like rudimentary NUDIX domain DOE78_08780 PF00293 NUDIX domain DOE78_08780 PF09297 NADH pyrophosphatase zinc ribbon domain DOE78_08785 PF03793 PASTA domain DOE78_08785 PF00069 Protein kinase domain DOE78_08790 PF01370 NAD dependent epimerase/dehydratase family DOE78_08795 PF09671 Spore coat protein (Spore_GerQ) DOE78_08800 PF12833 Helix-turn-helix domain DOE78_08800 PF10114 Sensory domain found in PocR DOE78_08805 PF02743 Cache domain DOE78_08805 PF06580 Histidine kinase DOE78_08805 PF00672 HAMP domain DOE78_08805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_08815 PF00480 ROK family DOE78_08825 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_08830 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_08875 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DOE78_08875 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DOE78_08880 PF07470 Glycosyl Hydrolase Family 88 DOE78_08890 PF13472 GDSL-like Lipase/Acylhydrolase family DOE78_08895 PF02449 Beta-galactosidase DOE78_08895 PF08533 Beta-galactosidase C-terminal domain DOE78_08895 PF08532 Beta-galactosidase trimerisation domain DOE78_08900 PF05336 L-rhamnose mutarotase DOE78_08905 PF00664 ABC transporter transmembrane region DOE78_08905 PF00005 ABC transporter DOE78_08910 PF00005 ABC transporter DOE78_08910 PF00664 ABC transporter transmembrane region DOE78_08915 PF02743 Cache domain DOE78_08915 PF00672 HAMP domain DOE78_08915 PF06580 Histidine kinase DOE78_08915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_08920 PF12833 Helix-turn-helix domain DOE78_08920 PF00072 Response regulator receiver domain DOE78_08925 PF13416 Bacterial extracellular solute-binding protein DOE78_08930 PF13416 Bacterial extracellular solute-binding protein DOE78_08935 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_08940 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_08945 PF04854 Protein of unknown function, DUF624 DOE78_08950 PF13472 GDSL-like Lipase/Acylhydrolase family DOE78_08950 PF07859 alpha/beta hydrolase fold DOE78_08955 PF05167 Uncharacterised ACR (DUF711) DOE78_08965 PF13407 Periplasmic binding protein domain DOE78_08975 PF02653 Branched-chain amino acid transport system / permease component DOE78_08980 PF00171 Aldehyde dehydrogenase family DOE78_08985 PF00375 Sodium:dicarboxylate symporter family DOE78_09000 PF02653 Branched-chain amino acid transport system / permease component DOE78_09005 PF11862 Domain of unknown function (DUF3382) DOE78_09005 PF02653 Branched-chain amino acid transport system / permease component DOE78_09010 PF00005 ABC transporter DOE78_09010 PF12399 Branched-chain amino acid ATP-binding cassette transporter DOE78_09015 PF00005 ABC transporter DOE78_09020 PF07905 Purine catabolism regulatory protein-like family DOE78_09020 PF13556 PucR C-terminal helix-turn-helix domain DOE78_09020 PF17853 GGDEF-like domain DOE78_09025 PF07859 alpha/beta hydrolase fold DOE78_09025 PF13472 GDSL-like Lipase/Acylhydrolase family DOE78_09030 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DOE78_09030 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DOE78_09035 PF00378 Enoyl-CoA hydratase/isomerase DOE78_09040 PF00501 AMP-binding enzyme DOE78_09040 PF13193 AMP-binding enzyme C-terminal domain DOE78_09050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DOE78_09050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DOE78_09050 PF02770 Acyl-CoA dehydrogenase, middle domain DOE78_09055 PF02803 Thiolase, C-terminal domain DOE78_09055 PF00108 Thiolase, N-terminal domain DOE78_09060 PF00676 Dehydrogenase E1 component DOE78_09065 PF02779 Transketolase, pyrimidine binding domain DOE78_09065 PF02780 Transketolase, C-terminal domain DOE78_09070 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DOE78_09070 PF00364 Biotin-requiring enzyme DOE78_09070 PF02817 e3 binding domain DOE78_09075 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE78_09075 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DOE78_09080 PF00107 Zinc-binding dehydrogenase DOE78_09080 PF08240 Alcohol dehydrogenase GroES-like domain DOE78_09085 PF00158 Sigma-54 interaction domain DOE78_09085 PF02954 Bacterial regulatory protein, Fis family DOE78_09085 PF01590 GAF domain DOE78_09090 PF00356 Bacterial regulatory proteins, lacI family DOE78_09095 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_09100 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_09105 PF01547 Bacterial extracellular solute-binding protein DOE78_09110 PF08244 Glycosyl hydrolases family 32 C terminal DOE78_09110 PF00251 Glycosyl hydrolases family 32 N-terminal domain DOE78_09115 PF00251 Glycosyl hydrolases family 32 N-terminal domain DOE78_09115 PF08244 Glycosyl hydrolases family 32 C terminal DOE78_09120 PF05525 Branched-chain amino acid transport protein DOE78_09125 PF03060 Nitronate monooxygenase DOE78_09130 PF00042 Globin DOE78_09130 PF00970 Oxidoreductase FAD-binding domain DOE78_09130 PF00175 Oxidoreductase NAD-binding domain DOE78_09135 PF02082 Transcriptional regulator DOE78_09140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE78_09140 PF03466 LysR substrate binding domain DOE78_09145 PF07883 Cupin domain DOE78_09155 PF01557 Fumarylacetoacetate (FAA) hydrolase family DOE78_09160 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DOE78_09165 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DOE78_09185 PF01614 Bacterial transcriptional regulator DOE78_09185 PF09339 IclR helix-turn-helix domain DOE78_09190 PF03480 Bacterial extracellular solute-binding protein, family 7 DOE78_09200 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DOE78_09205 PF00355 Rieske [2Fe-2S] domain DOE78_09205 PF00848 Ring hydroxylating alpha subunit (catalytic domain) DOE78_09210 PF00866 Ring hydroxylating beta subunit DOE78_09215 PF00171 Aldehyde dehydrogenase family DOE78_09220 PF01557 Fumarylacetoacetate (FAA) hydrolase family DOE78_09225 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation DOE78_09225 PF01118 Semialdehyde dehydrogenase, NAD binding domain DOE78_09230 PF00682 HMGL-like DOE78_09230 PF07836 DmpG-like communication domain DOE78_09240 PF01361 Tautomerase enzyme DOE78_09245 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase DOE78_09245 PF01871 AMMECR1 DOE78_09250 PF01494 FAD binding domain DOE78_09260 PF00294 pfkB family carbohydrate kinase DOE78_09265 PF01547 Bacterial extracellular solute-binding protein DOE78_09270 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_09275 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_09280 PF01261 Xylose isomerase-like TIM barrel DOE78_09305 PF03401 Tripartite tricarboxylate transporter family receptor DOE78_09315 PF01970 Tripartite tricarboxylate transporter TctA family DOE78_09320 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain DOE78_09320 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_09320 PF00989 PAS fold DOE78_09320 PF17203 Single cache domain 3 DOE78_09325 PF12431 Transcriptional regulator DOE78_09325 PF00072 Response regulator receiver domain DOE78_09335 PF00005 ABC transporter DOE78_09365 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DOE78_09365 PF09125 Cytochrome C oxidase subunit II, transmembrane DOE78_09370 PF00115 Cytochrome C and Quinol oxidase polypeptide I DOE78_09385 PF13028 Protein of unknown function (DUF3889) DOE78_09410 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DOE78_09420 PF01557 Fumarylacetoacetate (FAA) hydrolase family DOE78_09430 PF01494 FAD binding domain DOE78_09435 PF06039 Malate:quinone oxidoreductase (Mqo) DOE78_09440 PF00291 Pyridoxal-phosphate dependent enzyme DOE78_09440 PF13291 ACT domain DOE78_09445 PF01380 SIS domain DOE78_09445 PF01418 Helix-turn-helix domain, rpiR family DOE78_09450 PF00232 Glycosyl hydrolase family 1 DOE78_09460 PF05656 Protein of unknown function (DUF805) DOE78_09465 PF17770 Ribonuclease J C-terminal domain DOE78_09465 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain DOE78_09465 PF00753 Metallo-beta-lactamase superfamily DOE78_09485 PF00583 Acetyltransferase (GNAT) family DOE78_09490 PF00196 Bacterial regulatory proteins, luxR family DOE78_09490 PF13185 GAF domain DOE78_09495 PF07859 alpha/beta hydrolase fold DOE78_09505 PF00300 Histidine phosphatase superfamily (branch 1) DOE78_09510 PF01202 Shikimate kinase DOE78_09520 PF13536 Putative multidrug resistance efflux transporter DOE78_09530 PF00293 NUDIX domain DOE78_09545 PF13426 PAS domain DOE78_09545 PF01740 STAS domain DOE78_09550 PF01032 FecCD transport family DOE78_09555 PF01032 FecCD transport family DOE78_09560 PF00005 ABC transporter DOE78_09565 PF00583 Acetyltransferase (GNAT) family DOE78_09570 PF01636 Phosphotransferase enzyme family DOE78_09575 PF13411 MerR HTH family regulatory protein DOE78_09575 PF07739 TipAS antibiotic-recognition domain DOE78_09585 PF01370 NAD dependent epimerase/dehydratase family DOE78_09585 PF02911 Formyl transferase, C-terminal domain DOE78_09585 PF00551 Formyl transferase DOE78_09590 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DOE78_09590 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DOE78_09590 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DOE78_09595 PF00535 Glycosyl transferase family 2 DOE78_09600 PF00535 Glycosyl transferase family 2 DOE78_09605 PF00535 Glycosyl transferase family 2 DOE78_09635 PF07690 Major Facilitator Superfamily DOE78_09640 PF00881 Nitroreductase family DOE78_09650 PF00535 Glycosyl transferase family 2 DOE78_09655 PF16363 GDP-mannose 4,6 dehydratase DOE78_09660 PF01370 NAD dependent epimerase/dehydratase family DOE78_09665 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DOE78_09665 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DOE78_09665 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DOE78_09680 PF13439 Glycosyltransferase Family 4 DOE78_09680 PF00534 Glycosyl transferases group 1 DOE78_09685 PF00535 Glycosyl transferase family 2 DOE78_09690 PF00535 Glycosyl transferase family 2 DOE78_09705 PF01022 Bacterial regulatory protein, arsR family DOE78_09710 PF08327 Activator of Hsp90 ATPase homolog 1-like protein DOE78_09715 PF00486 Transcriptional regulatory protein, C terminal DOE78_09715 PF00072 Response regulator receiver domain DOE78_09740 PF13302 Acetyltransferase (GNAT) domain DOE78_09750 PF01713 Smr domain DOE78_09750 PF00488 MutS domain V DOE78_09770 PF00563 EAL domain DOE78_09770 PF00990 Diguanylate cyclase, GGDEF domain DOE78_09770 PF03707 Bacterial signalling protein N terminal repeat DOE78_09785 PF02080 TrkA-C domain DOE78_09785 PF06826 Predicted Permease Membrane Region DOE78_09805 PF00356 Bacterial regulatory proteins, lacI family DOE78_09805 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family DOE78_09810 PF08386 TAP-like protein DOE78_09810 PF00561 alpha/beta hydrolase fold DOE78_09815 PF07694 5TMR of 5TMR-LYT DOE78_09815 PF00990 Diguanylate cyclase, GGDEF domain DOE78_09820 PF16916 Dimerisation domain of Zinc Transporter DOE78_09820 PF01545 Cation efflux family DOE78_09835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_09835 PF00512 His Kinase A (phospho-acceptor) domain DOE78_09835 PF00989 PAS fold DOE78_09835 PF08447 PAS fold DOE78_09840 PF04463 Protein of unknown function (DUF523) DOE78_09845 PF00005 ABC transporter DOE78_09850 PF12679 ABC-2 family transporter protein DOE78_09860 PF13276 HTH-like domain DOE78_09860 PF13333 Integrase core domain DOE78_09860 PF00665 Integrase core domain DOE78_09865 PF00565 Staphylococcal nuclease homologue DOE78_09870 PF02770 Acyl-CoA dehydrogenase, middle domain DOE78_09870 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DOE78_09870 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DOE78_09875 PF00293 NUDIX domain DOE78_09880 PF00155 Aminotransferase class I and II DOE78_09880 PF00392 Bacterial regulatory proteins, gntR family DOE78_09900 PF00990 Diguanylate cyclase, GGDEF domain DOE78_09900 PF17158 Membrane-associated sensor, integral membrane domain DOE78_09905 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DOE78_09915 PF04607 Region found in RelA / SpoT proteins DOE78_09920 PF00625 Guanylate kinase DOE78_09930 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal DOE78_09930 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal DOE78_09940 PF03551 Transcriptional regulator PadR-like family DOE78_09955 PF02525 Flavodoxin-like fold DOE78_09960 PF13302 Acetyltransferase (GNAT) domain DOE78_09975 PF03707 Bacterial signalling protein N terminal repeat DOE78_09975 PF00990 Diguanylate cyclase, GGDEF domain DOE78_09975 PF00563 EAL domain DOE78_09980 PF03109 ABC1 family DOE78_09985 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DOE78_10000 PF17340 Family of unknown function (DUF5370) DOE78_10020 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain DOE78_10025 PF01047 MarR family DOE78_10030 PF01479 S4 domain DOE78_10030 PF00579 tRNA synthetases class I (W and Y) DOE78_10045 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE78_10045 PF00672 HAMP domain DOE78_10045 PF05227 CHASE3 domain DOE78_10050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_10050 PF00512 His Kinase A (phospho-acceptor) domain DOE78_10050 PF13188 PAS domain DOE78_10050 PF00989 PAS fold DOE78_10050 PF13426 PAS domain DOE78_10060 PF03129 Anticodon binding domain DOE78_10060 PF13393 Histidyl-tRNA synthetase DOE78_10065 PF00583 Acetyltransferase (GNAT) family DOE78_10070 PF03992 Antibiotic biosynthesis monooxygenase DOE78_10080 PF00805 Pentapeptide repeats (8 copies) DOE78_10095 PF00085 Thioredoxin DOE78_10100 PF01872 RibD C-terminal domain DOE78_10105 PF13419 Haloacid dehalogenase-like hydrolase DOE78_10120 PF00480 ROK family DOE78_10130 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DOE78_10145 PF01738 Dienelactone hydrolase family DOE78_10155 PF00158 Sigma-54 interaction domain DOE78_10155 PF13426 PAS domain DOE78_10155 PF02954 Bacterial regulatory protein, Fis family DOE78_10160 PF00171 Aldehyde dehydrogenase family DOE78_10165 PF00202 Aminotransferase class-III DOE78_10170 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DOE78_10170 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DOE78_10180 PF00324 Amino acid permease DOE78_10190 PF00753 Metallo-beta-lactamase superfamily DOE78_10195 PF13426 PAS domain DOE78_10195 PF13188 PAS domain DOE78_10195 PF00989 PAS fold DOE78_10195 PF00512 His Kinase A (phospho-acceptor) domain DOE78_10195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_10210 PF03741 Integral membrane protein TerC family DOE78_10240 PF00107 Zinc-binding dehydrogenase DOE78_10240 PF08240 Alcohol dehydrogenase GroES-like domain DOE78_10245 PF01925 Sulfite exporter TauE/SafE DOE78_10250 PF02082 Transcriptional regulator DOE78_10255 PF10055 Uncharacterized small protein (DUF2292) DOE78_10270 PF00005 ABC transporter DOE78_10275 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_10290 PF01810 LysE type translocator DOE78_10295 PF00571 CBS domain DOE78_10295 PF01380 SIS domain DOE78_10300 PF00232 Glycosyl hydrolase family 1 DOE78_10310 PF13407 Periplasmic binding protein domain DOE78_10310 PF00356 Bacterial regulatory proteins, lacI family DOE78_10315 PF00367 phosphotransferase system, EIIB DOE78_10315 PF02378 Phosphotransferase system, EIIC DOE78_10320 PF00251 Glycosyl hydrolases family 32 N-terminal domain DOE78_10320 PF08244 Glycosyl hydrolases family 32 C terminal DOE78_10325 PF00294 pfkB family carbohydrate kinase DOE78_10330 PF00557 Metallopeptidase family M24 DOE78_10335 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal DOE78_10335 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III DOE78_10360 PF00860 Permease family DOE78_10370 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DOE78_10375 PF01613 Flavin reductase like domain DOE78_10380 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DOE78_10385 PF01738 Dienelactone hydrolase family DOE78_10405 PF04439 Streptomycin adenylyltransferase DOE78_10420 PF01636 Phosphotransferase enzyme family DOE78_10430 PF02954 Bacterial regulatory protein, Fis family DOE78_10430 PF00158 Sigma-54 interaction domain DOE78_10430 PF13426 PAS domain DOE78_10435 PF00171 Aldehyde dehydrogenase family DOE78_10440 PF01619 Proline dehydrogenase DOE78_10445 PF01381 Helix-turn-helix DOE78_10450 PF17763 Glutaminase/Asparaginase C-terminal domain DOE78_10450 PF00710 Asparaginase, N-terminal DOE78_10455 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DOE78_10455 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DOE78_10460 PF07486 Cell Wall Hydrolase DOE78_10465 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain DOE78_10465 PF01740 STAS domain DOE78_10470 PF03707 Bacterial signalling protein N terminal repeat DOE78_10470 PF00563 EAL domain DOE78_10470 PF00990 Diguanylate cyclase, GGDEF domain DOE78_10475 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase DOE78_10475 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DOE78_10480 PF07486 Cell Wall Hydrolase DOE78_10485 PF00990 Diguanylate cyclase, GGDEF domain DOE78_10485 PF17158 Membrane-associated sensor, integral membrane domain DOE78_10495 PF01810 LysE type translocator DOE78_10505 PF09997 Predicted membrane protein (DUF2238) DOE78_10515 PF01839 FG-GAP repeat DOE78_10515 PF18370 Rhamnogalacturonan I lyases beta-sheet domain DOE78_10520 PF03707 Bacterial signalling protein N terminal repeat DOE78_10520 PF00990 Diguanylate cyclase, GGDEF domain DOE78_10520 PF00563 EAL domain DOE78_10525 PF12849 PBP superfamily domain DOE78_10530 PF02694 Uncharacterised BCR, YnfA/UPF0060 family DOE78_10535 PF13673 Acetyltransferase (GNAT) domain DOE78_10540 PF07690 Major Facilitator Superfamily DOE78_10545 PF00672 HAMP domain DOE78_10545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE78_10545 PF02743 Cache domain DOE78_10560 PF00171 Aldehyde dehydrogenase family DOE78_10565 PF00465 Iron-containing alcohol dehydrogenase DOE78_10570 PF00155 Aminotransferase class I and II DOE78_10570 PF00392 Bacterial regulatory proteins, gntR family DOE78_10575 PF00583 Acetyltransferase (GNAT) family DOE78_10580 PF12823 Domain of unknown function (DUF3817) DOE78_10590 PF03061 Thioesterase superfamily DOE78_10595 PF18370 Rhamnogalacturonan I lyases beta-sheet domain DOE78_10610 PF00672 HAMP domain DOE78_10610 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE78_10610 PF17202 Single cache domain 3 DOE78_10625 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DOE78_10630 PF00027 Cyclic nucleotide-binding domain DOE78_10640 PF00912 Transglycosylase DOE78_10640 PF00905 Penicillin binding protein transpeptidase domain DOE78_10650 PF02416 mttA/Hcf106 family DOE78_10655 PF00902 Sec-independent protein translocase protein (TatC) DOE78_10665 PF02421 Ferrous iron transport protein B DOE78_10665 PF07664 Ferrous iron transport protein B C terminus DOE78_10665 PF07670 Nucleoside recognition DOE78_10665 PF17910 FeoB cytosolic helical domain DOE78_10670 PF07664 Ferrous iron transport protein B C terminus DOE78_10670 PF17910 FeoB cytosolic helical domain DOE78_10670 PF02421 Ferrous iron transport protein B DOE78_10670 PF07670 Nucleoside recognition DOE78_10675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_10675 PF00512 His Kinase A (phospho-acceptor) domain DOE78_10680 PF00392 Bacterial regulatory proteins, gntR family DOE78_10680 PF07702 UTRA domain DOE78_10685 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_10690 PF00005 ABC transporter DOE78_10695 PF01380 SIS domain DOE78_10700 PF00497 Bacterial extracellular solute-binding proteins, family 3 DOE78_10705 PF03466 LysR substrate binding domain DOE78_10705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE78_10710 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DOE78_10710 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DOE78_10715 PF00294 pfkB family carbohydrate kinase DOE78_10725 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DOE78_10725 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DOE78_10735 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DOE78_10735 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DOE78_10750 PF00155 Aminotransferase class I and II DOE78_10760 PF00881 Nitroreductase family DOE78_10770 PF12706 Beta-lactamase superfamily domain DOE78_10775 PF00924 Mechanosensitive ion channel DOE78_10780 PF01740 STAS domain DOE78_10780 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain DOE78_10785 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DOE78_10800 PF00486 Transcriptional regulatory protein, C terminal DOE78_10800 PF00072 Response regulator receiver domain DOE78_10805 PF16736 Single Cache-like DOE78_10805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_10805 PF00512 His Kinase A (phospho-acceptor) domain DOE78_10805 PF00989 PAS fold DOE78_10810 PF04239 Protein of unknown function (DUF421) DOE78_10830 PF02082 Transcriptional regulator DOE78_10835 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE78_10845 PF02743 Cache domain DOE78_10845 PF00672 HAMP domain DOE78_10845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE78_10870 PF01740 STAS domain DOE78_10870 PF08678 Rsbr N terminal DOE78_10890 PF02743 Cache domain DOE78_10890 PF00672 HAMP domain DOE78_10890 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE78_10895 PF01156 Inosine-uridine preferring nucleoside hydrolase DOE78_10910 PF08447 PAS fold DOE78_10910 PF00989 PAS fold DOE78_10910 PF00512 His Kinase A (phospho-acceptor) domain DOE78_10910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_10930 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DOE78_10935 PF02378 Phosphotransferase system, EIIC DOE78_10940 PF04794 YdjC-like protein DOE78_10945 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit DOE78_10950 PF11975 Family 4 glycosyl hydrolase C-terminal domain DOE78_10950 PF02056 Family 4 glycosyl hydrolase DOE78_10960 PF13302 Acetyltransferase (GNAT) domain DOE78_10965 PF00135 Carboxylesterase family DOE78_10975 PF12833 Helix-turn-helix domain DOE78_10975 PF17853 GGDEF-like domain DOE78_11000 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DOE78_11000 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DOE78_11005 PF08281 Sigma-70, region 4 DOE78_11005 PF04542 Sigma-70 region 2 DOE78_11035 PF06865 Pyrimidine/purine nucleoside phosphorylase DOE78_11045 PF01381 Helix-turn-helix DOE78_11060 PF00293 NUDIX domain DOE78_11065 PF00120 Glutamine synthetase, catalytic domain DOE78_11065 PF03951 Glutamine synthetase, beta-Grasp domain DOE78_11070 PF04854 Protein of unknown function, DUF624 DOE78_11080 PF06580 Histidine kinase DOE78_11080 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_11080 PF00672 HAMP domain DOE78_11080 PF02743 Cache domain DOE78_11085 PF02954 Bacterial regulatory protein, Fis family DOE78_11085 PF00072 Response regulator receiver domain DOE78_11085 PF00158 Sigma-54 interaction domain DOE78_11100 PF10997 Alternate to MurJ DOE78_11125 PF07470 Glycosyl Hydrolase Family 88 DOE78_11140 PF00583 Acetyltransferase (GNAT) family DOE78_11145 PF13426 PAS domain DOE78_11145 PF13188 PAS domain DOE78_11145 PF00989 PAS fold DOE78_11145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_11145 PF00512 His Kinase A (phospho-acceptor) domain DOE78_11155 PF00005 ABC transporter DOE78_11160 PF02687 FtsX-like permease family DOE78_11160 PF12704 MacB-like periplasmic core domain DOE78_11165 PF08281 Sigma-70, region 4 DOE78_11165 PF12680 SnoaL-like domain DOE78_11165 PF04542 Sigma-70 region 2 DOE78_11175 PF01098 Cell cycle protein DOE78_11185 PF00912 Transglycosylase DOE78_11185 PF00905 Penicillin binding protein transpeptidase domain DOE78_11220 PF02311 AraC-like ligand binding domain DOE78_11220 PF12833 Helix-turn-helix domain DOE78_11230 PF13673 Acetyltransferase (GNAT) domain DOE78_11235 PF01047 MarR family DOE78_11240 PF00583 Acetyltransferase (GNAT) family DOE78_11245 PF04299 Putative FMN-binding domain DOE78_11260 PF02632 BioY family DOE78_11310 PF00990 Diguanylate cyclase, GGDEF domain DOE78_11310 PF08448 PAS fold DOE78_11325 PF04134 Protein of unknown function, DUF393 DOE78_11330 PF08338 Domain of unknown function (DUF1731) DOE78_11330 PF01370 NAD dependent epimerase/dehydratase family DOE78_11350 PF13361 UvrD-like helicase C-terminal domain DOE78_11350 PF00580 UvrD/REP helicase N-terminal domain DOE78_11350 PF12705 PD-(D/E)XK nuclease superfamily DOE78_11360 PF13302 Acetyltransferase (GNAT) domain DOE78_11380 PF00483 Nucleotidyl transferase DOE78_11405 PF14765 Polyketide synthase dehydratase DOE78_11405 PF00698 Acyl transferase domain DOE78_11405 PF00550 Phosphopantetheine attachment site DOE78_11405 PF08659 KR domain DOE78_11405 PF08990 Erythronolide synthase docking DOE78_11405 PF02801 Beta-ketoacyl synthase, C-terminal domain DOE78_11405 PF00109 Beta-ketoacyl synthase, N-terminal domain DOE78_11405 PF16197 Ketoacyl-synthetase C-terminal extension DOE78_11405 PF08240 Alcohol dehydrogenase GroES-like domain DOE78_11415 PF00722 Glycosyl hydrolases family 16 DOE78_11420 PF00356 Bacterial regulatory proteins, lacI family DOE78_11425 PF13443 Cro/C1-type HTH DNA-binding domain DOE78_11430 PF11188 Protein of unknown function (DUF2975) DOE78_11465 PF00266 Aminotransferase class-V DOE78_11500 PF05872 Bacterial protein of unknown function (DUF853) DOE78_11535 PF00772 DnaB-like helicase N terminal domain DOE78_11535 PF03796 DnaB-like helicase C terminal domain DOE78_11545 PF00565 Staphylococcal nuclease homologue DOE78_11570 PF17862 AAA+ lid domain DOE78_11570 PF00004 ATPase family associated with various cellular activities (AAA) DOE78_11570 PF01434 Peptidase family M41 DOE78_11625 PF08240 Alcohol dehydrogenase GroES-like domain DOE78_11625 PF00107 Zinc-binding dehydrogenase DOE78_11645 PF12833 Helix-turn-helix domain DOE78_11660 PF00107 Zinc-binding dehydrogenase DOE78_11660 PF08240 Alcohol dehydrogenase GroES-like domain DOE78_11665 PF00456 Transketolase, thiamine diphosphate binding domain DOE78_11670 PF02779 Transketolase, pyrimidine binding domain DOE78_11670 PF02780 Transketolase, C-terminal domain DOE78_11680 PF00171 Aldehyde dehydrogenase family DOE78_11710 PF02954 Bacterial regulatory protein, Fis family DOE78_11710 PF13426 PAS domain DOE78_11710 PF00158 Sigma-54 interaction domain DOE78_11715 PF08240 Alcohol dehydrogenase GroES-like domain DOE78_11715 PF00107 Zinc-binding dehydrogenase DOE78_11720 PF00230 Major intrinsic protein DOE78_11725 PF03063 Prismane/CO dehydrogenase family DOE78_11735 PF03358 NADPH-dependent FMN reductase DOE78_11740 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DOE78_11745 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DOE78_11760 PF17886 HSP20-like domain found in ArsA DOE78_11760 PF02374 Anion-transporting ATPase DOE78_11775 PF12833 Helix-turn-helix domain DOE78_11775 PF10114 Sensory domain found in PocR DOE78_11780 PF13478 XdhC Rossmann domain DOE78_11780 PF02625 XdhC and CoxI family DOE78_11790 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DOE78_11790 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DOE78_11800 PF03450 CO dehydrogenase flavoprotein C-terminal domain DOE78_11800 PF00941 FAD binding domain in molybdopterin dehydrogenase DOE78_11805 PF00111 2Fe-2S iron-sulfur cluster binding domain DOE78_11805 PF01799 [2Fe-2S] binding domain DOE78_11810 PF00501 AMP-binding enzyme DOE78_11810 PF13193 AMP-binding enzyme C-terminal domain DOE78_11815 PF00378 Enoyl-CoA hydratase/isomerase DOE78_11820 PF01740 STAS domain DOE78_11820 PF00916 Sulfate permease family DOE78_11825 PF07098 Protein of unknown function (DUF1360) DOE78_11835 PF08378 Nuclease-related domain DOE78_11850 PF13302 Acetyltransferase (GNAT) domain DOE78_11885 PF02056 Family 4 glycosyl hydrolase DOE78_11885 PF11975 Family 4 glycosyl hydrolase C-terminal domain DOE78_11910 PF13416 Bacterial extracellular solute-binding protein DOE78_11915 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_11920 PF00005 ABC transporter DOE78_11920 PF08402 TOBE domain DOE78_11925 PF00990 Diguanylate cyclase, GGDEF domain DOE78_11925 PF00563 EAL domain DOE78_11925 PF03707 Bacterial signalling protein N terminal repeat DOE78_11935 PF01547 Bacterial extracellular solute-binding protein DOE78_11940 PF06580 Histidine kinase DOE78_11940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_11940 PF02743 Cache domain DOE78_11940 PF00672 HAMP domain DOE78_11945 PF12833 Helix-turn-helix domain DOE78_11945 PF00072 Response regulator receiver domain DOE78_11955 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_11960 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_11965 PF00251 Glycosyl hydrolases family 32 N-terminal domain DOE78_11965 PF08244 Glycosyl hydrolases family 32 C terminal DOE78_11975 PF00571 CBS domain DOE78_11975 PF01595 Cyclin M transmembrane N-terminal domain DOE78_11975 PF03471 Transporter associated domain DOE78_11990 PF07683 Cobalamin synthesis protein cobW C-terminal domain DOE78_11990 PF02492 CobW/HypB/UreG, nucleotide-binding domain DOE78_11995 PF00253 Ribosomal protein S14p/S29e DOE78_12005 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DOE78_12010 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_12015 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_12020 PF00005 ABC transporter DOE78_12020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DOE78_12025 PF00005 ABC transporter DOE78_12025 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DOE78_12030 PF07563 Protein of unknown function (DUF1541) DOE78_12040 PF07454 Stage II sporulation protein P (SpoIIP) DOE78_12045 PF00356 Bacterial regulatory proteins, lacI family DOE78_12050 PF01547 Bacterial extracellular solute-binding protein DOE78_12055 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_12060 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_12075 PF00248 Aldo/keto reductase family DOE78_12085 PF07729 FCD domain DOE78_12085 PF00392 Bacterial regulatory proteins, gntR family DOE78_12090 PF01053 Cys/Met metabolism PLP-dependent enzyme DOE78_12095 PF00005 ABC transporter DOE78_12095 PF09383 NIL domain DOE78_12100 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_12110 PF03180 NLPA lipoprotein DOE78_12115 PF03807 NADP oxidoreductase coenzyme F420-dependent DOE78_12115 PF14748 Pyrroline-5-carboxylate reductase dimerisation DOE78_12130 PF00135 Carboxylesterase family DOE78_12145 PF00293 NUDIX domain DOE78_12150 PF01717 Cobalamin-independent synthase, Catalytic domain DOE78_12165 PF01661 Macro domain DOE78_12190 PF00128 Alpha amylase, catalytic domain DOE78_12190 PF16657 Maltogenic Amylase, C-terminal domain DOE78_12200 PF00672 HAMP domain DOE78_12200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_12200 PF02743 Cache domain DOE78_12200 PF06580 Histidine kinase DOE78_12205 PF00072 Response regulator receiver domain DOE78_12205 PF04397 LytTr DNA-binding domain DOE78_12215 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_12220 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_12250 PF03466 LysR substrate binding domain DOE78_12250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE78_12255 PF00310 Glutamine amidotransferases class-II DOE78_12255 PF04898 Glutamate synthase central domain DOE78_12255 PF01645 Conserved region in glutamate synthase DOE78_12255 PF01493 GXGXG motif DOE78_12260 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DOE78_12260 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE78_12265 PF00216 Bacterial DNA-binding protein DOE78_12270 PF00356 Bacterial regulatory proteins, lacI family DOE78_12275 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DOE78_12275 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DOE78_12285 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DOE78_12285 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DOE78_12290 PF13407 Periplasmic binding protein domain DOE78_12295 PF00005 ABC transporter DOE78_12300 PF02653 Branched-chain amino acid transport system / permease component DOE78_12350 PF00795 Carbon-nitrogen hydrolase DOE78_12380 PF03323 Bacillus/Clostridium GerA spore germination protein DOE78_12385 PF05504 Spore germination B3/ GerAC like, C-terminal DOE78_12390 PF00324 Amino acid permease DOE78_12405 PF00682 HMGL-like DOE78_12405 PF08502 LeuA allosteric (dimerisation) domain DOE78_12425 PF00085 Thioredoxin DOE78_12430 PF00724 NADH:flavin oxidoreductase / NADH oxidase family DOE78_12470 PF00188 Cysteine-rich secretory protein family DOE78_12480 PF13614 AAA domain DOE78_12490 PF00893 Small Multidrug Resistance protein DOE78_12495 PF00893 Small Multidrug Resistance protein DOE78_12500 PF00440 Bacterial regulatory proteins, tetR family DOE78_12505 PF00881 Nitroreductase family DOE78_12510 PF01047 MarR family DOE78_12520 PF08713 DNA alkylation repair enzyme DOE78_12525 PF00072 Response regulator receiver domain DOE78_12545 PF13419 Haloacid dehalogenase-like hydrolase DOE78_12555 PF00324 Amino acid permease DOE78_12575 PF07228 Stage II sporulation protein E (SpoIIE) DOE78_12575 PF13426 PAS domain DOE78_12580 PF01740 STAS domain DOE78_12585 PF02586 SOS response associated peptidase (SRAP) DOE78_12590 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DOE78_12590 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DOE78_12595 PF00589 Phage integrase family DOE78_12600 PF02080 TrkA-C domain DOE78_12600 PF00999 Sodium/hydrogen exchanger family DOE78_12600 PF03471 Transporter associated domain DOE78_12605 PF02535 ZIP Zinc transporter DOE78_12610 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) DOE78_12635 PF03992 Antibiotic biosynthesis monooxygenase DOE78_12645 PF00857 Isochorismatase family DOE78_12650 PF08892 YqcI/YcgG family DOE78_12655 PF12787 EcsC protein family DOE78_12660 PF00478 IMP dehydrogenase / GMP reductase domain DOE78_12665 PF01569 PAP2 superfamily DOE78_12680 PF07681 DoxX DOE78_12685 PF01435 Peptidase family M48 DOE78_12695 PF07690 Major Facilitator Superfamily DOE78_12715 PF01593 Flavin containing amine oxidoreductase DOE78_12725 PF02416 mttA/Hcf106 family DOE78_12730 PF00902 Sec-independent protein translocase protein (TatC) DOE78_12735 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DOE78_12735 PF08279 HTH domain DOE78_12735 PF00874 PRD domain DOE78_12735 PF05043 Mga helix-turn-helix domain DOE78_12740 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DOE78_12745 PF00365 Phosphofructokinase DOE78_12755 PF03611 PTS system sugar-specific permease component DOE78_12765 PF01116 Fructose-bisphosphate aldolase class-II DOE78_12775 PF07690 Major Facilitator Superfamily DOE78_12790 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DOE78_12790 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DOE78_12795 PF01903 CbiX DOE78_12800 PF02571 Precorrin-6x reductase CbiJ/CobK DOE78_12805 PF02570 Precorrin-8X methylmutase DOE78_12810 PF01888 CbiD DOE78_12815 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DOE78_12820 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DOE78_12825 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DOE78_12830 PF11760 Cobalamin synthesis G N-terminal DOE78_12830 PF11761 Cobalamin biosynthesis central region DOE78_12830 PF01890 Cobalamin synthesis G C-terminus DOE78_12835 PF07685 CobB/CobQ-like glutamine amidotransferase domain DOE78_12835 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DOE78_12840 PF12557 Cob(I)alamin adenosyltransferase N terminal DOE78_12840 PF02572 ATP:corrinoid adenosyltransferase BtuR/CobO/CobP DOE78_12855 PF00149 Calcineurin-like phosphoesterase DOE78_12870 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_12875 PF00005 ABC transporter DOE78_12895 PF00893 Small Multidrug Resistance protein DOE78_12900 PF00893 Small Multidrug Resistance protein DOE78_12905 PF06508 Queuosine biosynthesis protein QueC DOE78_12910 PF01242 6-pyruvoyl tetrahydropterin synthase DOE78_12915 PF04055 Radical SAM superfamily DOE78_12920 PF07690 Major Facilitator Superfamily DOE78_12925 PF07690 Major Facilitator Superfamily DOE78_12930 PF16369 C-terminal lipocalin-like domain DOE78_12930 PF04616 Glycosyl hydrolases family 43 DOE78_12960 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DOE78_12965 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE78_12965 PF00672 HAMP domain DOE78_12965 PF02743 Cache domain DOE78_12970 PF13407 Periplasmic binding protein domain DOE78_12975 PF01554 MatE DOE78_12980 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE78_12980 PF02743 Cache domain DOE78_12980 PF00672 HAMP domain DOE78_12985 PF02110 Hydroxyethylthiazole kinase family DOE78_12990 PF02581 Thiamine monophosphate synthase DOE78_12995 PF08543 Phosphomethylpyrimidine kinase DOE78_13000 PF05690 Thiazole biosynthesis protein ThiG DOE78_13005 PF04055 Radical SAM superfamily DOE78_13005 PF06968 Biotin and Thiamin Synthesis associated domain DOE78_13020 PF00005 ABC transporter DOE78_13025 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_13030 PF09084 NMT1/THI5 like DOE78_13040 PF02581 Thiamine monophosphate synthase DOE78_13045 PF00899 ThiF family DOE78_13055 PF00704 Glycosyl hydrolases family 18 DOE78_13060 PF00583 Acetyltransferase (GNAT) family DOE78_13095 PF13673 Acetyltransferase (GNAT) domain DOE78_13095 PF04229 GrpB protein DOE78_13100 PF00486 Transcriptional regulatory protein, C terminal DOE78_13100 PF00072 Response regulator receiver domain DOE78_13105 PF00512 His Kinase A (phospho-acceptor) domain DOE78_13105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_13105 PF00672 HAMP domain DOE78_13120 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DOE78_13140 PF17922 Tetracyclin repressor-like, C-terminal domain DOE78_13140 PF00440 Bacterial regulatory proteins, tetR family DOE78_13145 PF00440 Bacterial regulatory proteins, tetR family DOE78_13145 PF17922 Tetracyclin repressor-like, C-terminal domain DOE78_13150 PF02074 Carboxypeptidase Taq (M32) metallopeptidase DOE78_13165 PF04012 PspA/IM30 family DOE78_13175 PF01432 Peptidase family M3 DOE78_13175 PF08439 Oligopeptidase F DOE78_13200 PF00313 'Cold-shock' DNA-binding domain DOE78_13205 PF12320 Type 5 capsule protein repressor C-terminal domain DOE78_13205 PF00149 Calcineurin-like phosphoesterase DOE78_13210 PF13476 AAA domain DOE78_13215 PF09106 Elongation factor SelB, winged helix DOE78_13215 PF09107 Elongation factor SelB, winged helix DOE78_13215 PF00009 Elongation factor Tu GTP binding domain DOE78_13215 PF09105 Elongation factor SelB, winged helix DOE78_13215 PF03144 Elongation factor Tu domain 2 DOE78_13220 PF01740 STAS domain DOE78_13225 PF00795 Carbon-nitrogen hydrolase DOE78_13230 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE78_13230 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region DOE78_13230 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster DOE78_13235 PF01180 Dihydroorotate dehydrogenase DOE78_13240 PF01979 Amidohydrolase family DOE78_13245 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin DOE78_13255 PF07905 Purine catabolism regulatory protein-like family DOE78_13255 PF17853 GGDEF-like domain DOE78_13255 PF13556 PucR C-terminal helix-turn-helix domain DOE78_13260 PF00171 Aldehyde dehydrogenase family DOE78_13265 PF00202 Aminotransferase class-III DOE78_13270 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DOE78_13270 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DOE78_13275 PF07687 Peptidase dimerisation domain DOE78_13275 PF01546 Peptidase family M20/M25/M40 DOE78_13285 PF04324 BFD-like [2Fe-2S] binding domain DOE78_13285 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain DOE78_13285 PF01077 Nitrite and sulphite reductase 4Fe-4S domain DOE78_13285 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE78_13285 PF18267 Rubredoxin NAD+ reductase C-terminal domain DOE78_13290 PF00355 Rieske [2Fe-2S] domain DOE78_13295 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DOE78_13300 PF14824 Sirohaem biosynthesis protein central DOE78_13305 PF00884 Sulfatase DOE78_13315 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain DOE78_13315 PF00749 tRNA synthetases class I (E and Q), catalytic domain DOE78_13320 PF00877 NlpC/P60 family DOE78_13320 PF01476 LysM domain DOE78_13325 PF05343 M42 glutamyl aminopeptidase DOE78_13330 PF00512 His Kinase A (phospho-acceptor) domain DOE78_13330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_13330 PF00989 PAS fold DOE78_13330 PF08447 PAS fold DOE78_13345 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DOE78_13345 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DOE78_13355 PF13538 UvrD-like helicase C-terminal domain DOE78_13360 PF07687 Peptidase dimerisation domain DOE78_13360 PF01546 Peptidase family M20/M25/M40 DOE78_13370 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DOE78_13375 PF01741 Large-conductance mechanosensitive channel, MscL DOE78_13395 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_13400 PF00005 ABC transporter DOE78_13410 PF00155 Aminotransferase class I and II DOE78_13415 PF01370 NAD dependent epimerase/dehydratase family DOE78_13435 PF03841 L-seryl-tRNA selenium transferase DOE78_13435 PF12390 Selenocysteine synthase N terminal DOE78_13440 PF08179 Small acid-soluble spore protein P family DOE78_13455 PF00694 Aconitase C-terminal domain DOE78_13455 PF00330 Aconitase family (aconitate hydratase) DOE78_13460 PF01008 Initiation factor 2 subunit family DOE78_13470 PF00578 AhpC/TSA family DOE78_13475 PF13040 Fur-regulated basic protein B DOE78_13480 PF08177 Small acid-soluble spore protein N family DOE78_13490 PF00004 ATPase family associated with various cellular activities (AAA) DOE78_13490 PF17866 AAA lid domain DOE78_13495 PF03061 Thioesterase superfamily DOE78_13505 PF01521 Iron-sulphur cluster biosynthesis DOE78_13515 PF09587 Bacterial capsule synthesis protein PGA_cap DOE78_13520 PF09924 Uncharacterised conserved protein (DUF2156) DOE78_13520 PF03706 Lysylphosphatidylglycerol synthase TM region DOE78_13525 PF00512 His Kinase A (phospho-acceptor) domain DOE78_13525 PF00989 PAS fold DOE78_13525 PF08447 PAS fold DOE78_13525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_13530 PF02660 Glycerol-3-phosphate acyltransferase DOE78_13535 PF00704 Glycosyl hydrolases family 18 DOE78_13540 PF13380 CoA binding domain DOE78_13545 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_13545 PF00986 DNA gyrase B subunit, carboxyl terminus DOE78_13545 PF01751 Toprim domain DOE78_13545 PF00204 DNA gyrase B DOE78_13550 PF00521 DNA gyrase/topoisomerase IV, subunit A DOE78_13550 PF03989 DNA gyrase C-terminal domain, beta-propeller DOE78_13560 PF01370 NAD dependent epimerase/dehydratase family DOE78_13585 PF17801 Alpha galactosidase C-terminal beta sandwich domain DOE78_13590 PF01325 Iron dependent repressor, N-terminal DNA binding domain DOE78_13590 PF00480 ROK family DOE78_13595 PF05698 Bacterial trigger factor protein (TF) C-terminus DOE78_13600 PF16990 Carbohydrate binding module (family 35) DOE78_13600 PF03422 Carbohydrate binding module (family 6) DOE78_13600 PF13199 Glycosyl hydrolase family 66 DOE78_13610 PF13802 Galactose mutarotase-like DOE78_13610 PF01055 Glycosyl hydrolases family 31 DOE78_13610 PF16338 Domain of unknown function (DUF4968) DOE78_13610 PF17137 Domain of unknown function (DUF5110) DOE78_13615 PF06580 Histidine kinase DOE78_13615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_13620 PF12833 Helix-turn-helix domain DOE78_13620 PF07883 Cupin domain DOE78_13670 PF01641 SelR domain DOE78_13670 PF01625 Peptide methionine sulfoxide reductase DOE78_13685 PF13460 NAD(P)H-binding DOE78_13710 PF00251 Glycosyl hydrolases family 32 N-terminal domain DOE78_13710 PF08244 Glycosyl hydrolases family 32 C terminal DOE78_13725 PF10997 Alternate to MurJ DOE78_13755 PF05163 DinB family DOE78_13810 PF00067 Cytochrome P450 DOE78_13820 PF00155 Aminotransferase class I and II DOE78_13825 PF00202 Aminotransferase class-III DOE78_13830 PF03744 6-carboxyhexanoate--CoA ligase DOE78_13865 PF00072 Response regulator receiver domain DOE78_13865 PF12833 Helix-turn-helix domain DOE78_13870 PF02743 Cache domain DOE78_13870 PF06580 Histidine kinase DOE78_13870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_13870 PF00672 HAMP domain DOE78_13875 PF01547 Bacterial extracellular solute-binding protein DOE78_13880 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_13885 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_13890 PF09529 Integral membrane protein (intg_mem_TP0381) DOE78_13915 PF09671 Spore coat protein (Spore_GerQ) DOE78_13920 PF07486 Cell Wall Hydrolase DOE78_13925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_13925 PF13426 PAS domain DOE78_13925 PF13188 PAS domain DOE78_13925 PF00989 PAS fold DOE78_13925 PF00512 His Kinase A (phospho-acceptor) domain DOE78_13930 PF02603 HPr Serine kinase N terminus DOE78_13930 PF07475 HPr Serine kinase C-terminal domain DOE78_13940 PF02929 Beta galactosidase small chain DOE78_13940 PF00703 Glycosyl hydrolases family 2 DOE78_13940 PF02836 Glycosyl hydrolases family 2, TIM barrel domain DOE78_13940 PF16353 Domain of unknown function(DUF4981) DOE78_13940 PF02837 Glycosyl hydrolases family 2, sugar binding domain DOE78_13945 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_13950 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_13955 PF13416 Bacterial extracellular solute-binding protein DOE78_13960 PF02743 Cache domain DOE78_13960 PF00672 HAMP domain DOE78_13960 PF06580 Histidine kinase DOE78_13960 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_13965 PF12833 Helix-turn-helix domain DOE78_13965 PF00072 Response regulator receiver domain DOE78_13980 PF13539 D-alanyl-D-alanine carboxypeptidase DOE78_13990 PF06874 Firmicute fructose-1,6-bisphosphatase DOE78_13995 PF00881 Nitroreductase family DOE78_14010 PF13302 Acetyltransferase (GNAT) domain DOE78_14015 PF00005 ABC transporter DOE78_14015 PF00664 ABC transporter transmembrane region DOE78_14020 PF00005 ABC transporter DOE78_14020 PF00664 ABC transporter transmembrane region DOE78_14025 PF01047 MarR family DOE78_14035 PF00155 Aminotransferase class I and II DOE78_14035 PF00392 Bacterial regulatory proteins, gntR family DOE78_14040 PF10787 Uncharacterised protein from bacillus cereus group DOE78_14045 PF07702 UTRA domain DOE78_14045 PF00392 Bacterial regulatory proteins, gntR family DOE78_14050 PF00232 Glycosyl hydrolase family 1 DOE78_14055 PF00180 Isocitrate/isopropylmalate dehydrogenase DOE78_14065 PF02779 Transketolase, pyrimidine binding domain DOE78_14065 PF02780 Transketolase, C-terminal domain DOE78_14070 PF00456 Transketolase, thiamine diphosphate binding domain DOE78_14075 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DOE78_14085 PF03480 Bacterial extracellular solute-binding protein, family 7 DOE78_14090 PF08240 Alcohol dehydrogenase GroES-like domain DOE78_14090 PF00107 Zinc-binding dehydrogenase DOE78_14095 PF08240 Alcohol dehydrogenase GroES-like domain DOE78_14095 PF00107 Zinc-binding dehydrogenase DOE78_14100 PF00356 Bacterial regulatory proteins, lacI family DOE78_14105 PF00491 Arginase family DOE78_14110 PF00324 Amino acid permease DOE78_14115 PF00440 Bacterial regulatory proteins, tetR family DOE78_14115 PF17934 Tetracyclin repressor-like, C-terminal domain DOE78_14120 PF01872 RibD C-terminal domain DOE78_14120 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DOE78_14125 PF00925 GTP cyclohydrolase II DOE78_14125 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DOE78_14135 PF00175 Oxidoreductase NAD-binding domain DOE78_14135 PF00258 Flavodoxin DOE78_14135 PF00667 FAD binding domain DOE78_14150 PF00395 S-layer homology domain DOE78_14155 PF00171 Aldehyde dehydrogenase family DOE78_14160 PF00205 Thiamine pyrophosphate enzyme, central domain DOE78_14160 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DOE78_14160 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DOE78_14165 PF08240 Alcohol dehydrogenase GroES-like domain DOE78_14165 PF00107 Zinc-binding dehydrogenase DOE78_14175 PF00682 HMGL-like DOE78_14190 PF00356 Bacterial regulatory proteins, lacI family DOE78_14195 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component DOE78_14200 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component DOE78_14205 PF03480 Bacterial extracellular solute-binding protein, family 7 DOE78_14210 PF00563 EAL domain DOE78_14210 PF03707 Bacterial signalling protein N terminal repeat DOE78_14210 PF00990 Diguanylate cyclase, GGDEF domain DOE78_14215 PF00596 Class II Aldolase and Adducin N-terminal domain DOE78_14220 PF03698 Uncharacterised protein family (UPF0180) DOE78_14225 PF05139 Erythromycin esterase DOE78_14225 PF00156 Phosphoribosyl transferase domain DOE78_14250 PF00296 Luciferase-like monooxygenase DOE78_14255 PF04239 Protein of unknown function (DUF421) DOE78_14260 PF00491 Arginase family DOE78_14265 PF01979 Amidohydrolase family DOE78_14270 PF17392 Urocanase C-terminal domain DOE78_14270 PF01175 Urocanase Rossmann-like domain DOE78_14270 PF17391 Urocanase N-terminal domain DOE78_14275 PF00221 Aromatic amino acid lyase DOE78_14280 PF05067 Manganese containing catalase DOE78_14285 PF12652 CotJB protein DOE78_14290 PF11007 Spore coat associated protein JA (CotJA) DOE78_14295 PF13243 Squalene-hopene cyclase C-terminal domain DOE78_14295 PF13249 Squalene-hopene cyclase N-terminal domain DOE78_14300 PF01476 LysM domain DOE78_14300 PF00877 NlpC/P60 family DOE78_14305 PF07552 Spore Coat Protein X and V domain DOE78_14315 PF00196 Bacterial regulatory proteins, luxR family DOE78_14315 PF00072 Response regulator receiver domain DOE78_14320 PF07730 Histidine kinase DOE78_14330 PF01965 DJ-1/PfpI family DOE78_14335 PF01323 DSBA-like thioredoxin domain DOE78_14350 PF03372 Endonuclease/Exonuclease/phosphatase family DOE78_14360 PF03992 Antibiotic biosynthesis monooxygenase DOE78_14370 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family DOE78_14375 PF00106 short chain dehydrogenase DOE78_14380 PF04308 Ribonuclease H-like DOE78_14395 PF13411 MerR HTH family regulatory protein DOE78_14400 PF01865 Protein of unknown function DUF47 DOE78_14405 PF01384 Phosphate transporter family DOE78_14415 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DOE78_14425 PF00535 Glycosyl transferase family 2 DOE78_14435 PF00188 Cysteine-rich secretory protein family DOE78_14440 PF01212 Beta-eliminating lyase DOE78_14455 PF00989 PAS fold DOE78_14455 PF13426 PAS domain DOE78_14455 PF13188 PAS domain DOE78_14455 PF00512 His Kinase A (phospho-acceptor) domain DOE78_14455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_14465 PF01432 Peptidase family M3 DOE78_14465 PF08439 Oligopeptidase F DOE78_14475 PF14169 Cold-inducible protein YdjO DOE78_14490 PF01226 Formate/nitrite transporter DOE78_14495 PF00325 Bacterial regulatory proteins, crp family DOE78_14495 PF00027 Cyclic nucleotide-binding domain DOE78_14500 PF00171 Aldehyde dehydrogenase family DOE78_14515 PF00005 ABC transporter DOE78_14515 PF12848 ABC transporter DOE78_14530 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_14535 PF00768 D-alanyl-D-alanine carboxypeptidase DOE78_14535 PF07943 Penicillin-binding protein 5, C-terminal domain DOE78_14545 PF01228 Glycine radical DOE78_14545 PF02901 Pyruvate formate lyase-like DOE78_14550 PF04055 Radical SAM superfamily DOE78_14555 PF02540 NAD synthase DOE78_14560 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain DOE78_14560 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family DOE78_14560 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain DOE78_14570 PF02096 60Kd inner membrane protein DOE78_14575 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DOE78_14580 PF02537 CrcB-like protein, Camphor Resistance (CrcB) DOE78_14595 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like DOE78_14610 PF01053 Cys/Met metabolism PLP-dependent enzyme DOE78_14615 PF01053 Cys/Met metabolism PLP-dependent enzyme DOE78_14620 PF02574 Homocysteine S-methyltransferase DOE78_14620 PF02219 Methylenetetrahydrofolate reductase DOE78_14625 PF02310 B12 binding domain DOE78_14625 PF00809 Pterin binding enzyme DOE78_14625 PF02965 Vitamin B12 dependent methionine synthase, activation domain DOE78_14625 PF02607 B12 binding domain DOE78_14625 PF02574 Homocysteine S-methyltransferase DOE78_14630 PF02682 Carboxyltransferase domain, subdomain C and D DOE78_14635 PF02626 Carboxyltransferase domain, subdomain A and B DOE78_14640 PF03746 LamB/YcsF family DOE78_14655 PF01544 CorA-like Mg2+ transporter protein DOE78_14670 PF07730 Histidine kinase DOE78_14670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_14680 PF00072 Response regulator receiver domain DOE78_14680 PF00196 Bacterial regulatory proteins, luxR family DOE78_14690 PF07690 Major Facilitator Superfamily DOE78_14720 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DOE78_14720 PF01568 Molydopterin dinucleotide binding domain DOE78_14720 PF00384 Molybdopterin oxidoreductase DOE78_14730 PF01966 HD domain DOE78_14745 PF05036 Sporulation related domain DOE78_14745 PF01520 N-acetylmuramoyl-L-alanine amidase DOE78_14750 PF01595 Cyclin M transmembrane N-terminal domain DOE78_14750 PF03471 Transporter associated domain DOE78_14750 PF00571 CBS domain DOE78_14755 PF01235 Sodium:alanine symporter family DOE78_14760 PF04294 VanW like protein DOE78_14765 PF04748 Divergent polysaccharide deacetylase DOE78_14770 PF09515 Thiamine transporter protein (Thia_YuaJ) DOE78_14775 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE78_14775 PF00672 HAMP domain DOE78_14775 PF05227 CHASE3 domain DOE78_14780 PF02898 Nitric oxide synthase, oxygenase domain DOE78_14785 PF01411 tRNA synthetases class II (A) DOE78_14785 PF02272 DHHA1 domain DOE78_14785 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DOE78_14790 PF12679 ABC-2 family transporter protein DOE78_14795 PF00005 ABC transporter DOE78_14800 PF02386 Cation transport protein DOE78_14805 PF00571 CBS domain DOE78_14805 PF01595 Cyclin M transmembrane N-terminal domain DOE78_14805 PF03471 Transporter associated domain DOE78_14810 PF00696 Amino acid kinase family DOE78_14810 PF13840 ACT domain DOE78_14820 PF04542 Sigma-70 region 2 DOE78_14820 PF08281 Sigma-70, region 4 DOE78_14830 PF00005 ABC transporter DOE78_14835 PF00392 Bacterial regulatory proteins, gntR family DOE78_14840 PF08240 Alcohol dehydrogenase GroES-like domain DOE78_14840 PF00107 Zinc-binding dehydrogenase DOE78_14855 PF05163 DinB family DOE78_14860 PF01709 Transcriptional regulator DOE78_14875 PF00989 PAS fold DOE78_14875 PF00512 His Kinase A (phospho-acceptor) domain DOE78_14875 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_14880 PF12679 ABC-2 family transporter protein DOE78_14885 PF00005 ABC transporter DOE78_14890 PF13472 GDSL-like Lipase/Acylhydrolase family DOE78_14905 PF01235 Sodium:alanine symporter family DOE78_14910 PF09335 SNARE associated Golgi protein DOE78_14915 PF00551 Formyl transferase DOE78_14915 PF01842 ACT domain DOE78_14925 PF01541 GIY-YIG catalytic domain DOE78_14930 PF01066 CDP-alcohol phosphatidyltransferase DOE78_14940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_14940 PF00512 His Kinase A (phospho-acceptor) domain DOE78_14940 PF08447 PAS fold DOE78_14940 PF00989 PAS fold DOE78_14945 PF00269 Small, acid-soluble spore proteins, alpha/beta type DOE78_14950 PF01226 Formate/nitrite transporter DOE78_14955 PF04239 Protein of unknown function (DUF421) DOE78_14960 PF02790 Cytochrome C oxidase subunit II, transmembrane domain DOE78_14965 PF00115 Cytochrome C and Quinol oxidase polypeptide I DOE78_14970 PF00510 Cytochrome c oxidase subunit III DOE78_14975 PF03626 Prokaryotic Cytochrome C oxidase subunit IV DOE78_14985 PF01810 LysE type translocator DOE78_15000 PF00583 Acetyltransferase (GNAT) family DOE78_15000 PF00795 Carbon-nitrogen hydrolase DOE78_15010 PF00005 ABC transporter DOE78_15010 PF00664 ABC transporter transmembrane region DOE78_15020 PF09680 Family of unknown function DOE78_15025 PF01594 AI-2E family transporter DOE78_15030 PF10372 Bacterial membrane-spanning protein N-terminus DOE78_15030 PF02457 DisA bacterial checkpoint controller nucleotide-binding DOE78_15035 PF00753 Metallo-beta-lactamase superfamily DOE78_15040 PF00290 Tryptophan synthase alpha chain DOE78_15045 PF00291 Pyridoxal-phosphate dependent enzyme DOE78_15050 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase DOE78_15055 PF00218 Indole-3-glycerol phosphate synthase DOE78_15060 PF00591 Glycosyl transferase family, a/b domain DOE78_15060 PF02885 Glycosyl transferase family, helical bundle domain DOE78_15065 PF00117 Glutamine amidotransferase class-I DOE78_15080 PF03475 3-alpha domain DOE78_15080 PF03473 MOSC domain DOE78_15085 PF07690 Major Facilitator Superfamily DOE78_15090 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DOE78_15090 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DOE78_15095 PF00294 pfkB family carbohydrate kinase DOE78_15100 PF00455 DeoR C terminal sensor domain DOE78_15100 PF08220 DeoR-like helix-turn-helix domain DOE78_15105 PF08141 Small acid-soluble spore protein H family DOE78_15135 PF01810 LysE type translocator DOE78_15140 PF00324 Amino acid permease DOE78_15145 PF00512 His Kinase A (phospho-acceptor) domain DOE78_15145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_15145 PF02743 Cache domain DOE78_15160 PF00313 'Cold-shock' DNA-binding domain DOE78_15165 PF00270 DEAD/DEAH box helicase DOE78_15165 PF00271 Helicase conserved C-terminal domain DOE78_15170 PF00313 'Cold-shock' DNA-binding domain DOE78_15175 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DOE78_15175 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DOE78_15180 PF16901 C-terminal domain of alpha-glycerophosphate oxidase DOE78_15180 PF01266 FAD dependent oxidoreductase DOE78_15185 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DOE78_15185 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DOE78_15190 PF00230 Major intrinsic protein DOE78_15195 PF04309 Glycerol-3-phosphate responsive antiterminator DOE78_15200 PF02735 Ku70/Ku80 beta-barrel domain DOE78_15205 PF01068 ATP dependent DNA ligase domain DOE78_15210 PF01678 Diaminopimelate epimerase DOE78_15215 PF00563 EAL domain DOE78_15215 PF08668 HDOD domain DOE78_15220 PF00860 Permease family DOE78_15225 PF00578 AhpC/TSA family DOE78_15240 PF01734 Patatin-like phospholipase DOE78_15250 PF02673 Bacitracin resistance protein BacA DOE78_15255 PF13382 Adenine deaminase C-terminal domain DOE78_15255 PF01979 Amidohydrolase family DOE78_15265 PF01554 MatE DOE78_15270 PF01966 HD domain DOE78_15270 PF00072 Response regulator receiver domain DOE78_15275 PF02386 Cation transport protein DOE78_15295 PF13115 YtkA-like DOE78_15300 PF00512 His Kinase A (phospho-acceptor) domain DOE78_15300 PF00672 HAMP domain DOE78_15300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_15305 PF00486 Transcriptional regulatory protein, C terminal DOE78_15305 PF00072 Response regulator receiver domain DOE78_15315 PF03006 Haemolysin-III related DOE78_15330 PF07683 Cobalamin synthesis protein cobW C-terminal domain DOE78_15330 PF02492 CobW/HypB/UreG, nucleotide-binding domain DOE78_15335 PF03816 Cell envelope-related transcriptional attenuator domain DOE78_15340 PF01471 Putative peptidoglycan binding domain DOE78_15340 PF03572 Peptidase family S41 DOE78_15340 PF17820 PDZ domain DOE78_15345 PF02557 D-alanyl-D-alanine carboxypeptidase DOE78_15350 PF01048 Phosphorylase superfamily DOE78_15355 PF14191 YodL-like DOE78_15360 PF07070 SpoOM protein DOE78_15365 PF03793 PASTA domain DOE78_15365 PF00069 Protein kinase domain DOE78_15370 PF10720 Protein of unknown function (DUF2515) DOE78_15375 PF14162 YozD-like protein DOE78_15385 PF06855 YozE SAM-like fold DOE78_15390 PF14122 YokU-like protein, putative antitoxin DOE78_15400 PF04397 LytTr DNA-binding domain DOE78_15400 PF00072 Response regulator receiver domain DOE78_15415 PF12544 Lysine-2,3-aminomutase DOE78_15420 PF13426 PAS domain DOE78_15420 PF00158 Sigma-54 interaction domain DOE78_15420 PF02954 Bacterial regulatory protein, Fis family DOE78_15425 PF00583 Acetyltransferase (GNAT) family DOE78_15430 PF01546 Peptidase family M20/M25/M40 DOE78_15430 PF07687 Peptidase dimerisation domain DOE78_15435 PF01144 Coenzyme A transferase DOE78_15440 PF01144 Coenzyme A transferase DOE78_15445 PF00202 Aminotransferase class-III DOE78_15450 PF17676 LD-carboxypeptidase C-terminal domain DOE78_15450 PF02016 LD-carboxypeptidase N-terminal domain DOE78_15460 PF09680 Family of unknown function DOE78_15470 PF01641 SelR domain DOE78_15475 PF01625 Peptide methionine sulfoxide reductase DOE78_15480 PF03193 RsgA GTPase DOE78_15495 PF13472 GDSL-like Lipase/Acylhydrolase family DOE78_15500 PF02630 SCO1/SenC DOE78_15505 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_15505 PF13426 PAS domain DOE78_15505 PF00512 His Kinase A (phospho-acceptor) domain DOE78_15505 PF00989 PAS fold DOE78_15505 PF13188 PAS domain DOE78_15510 PF02645 Uncharacterised protein, DegV family COG1307 DOE78_15525 PF00902 Sec-independent protein translocase protein (TatC) DOE78_15530 PF02416 mttA/Hcf106 family DOE78_15535 PF00585 C-terminal regulatory domain of Threonine dehydratase DOE78_15535 PF00291 Pyridoxal-phosphate dependent enzyme DOE78_15540 PF01553 Acyltransferase DOE78_15545 PF00186 Dihydrofolate reductase DOE78_15550 PF00303 Thymidylate synthase DOE78_15560 PF14005 YpjP-like protein DOE78_15565 PF04445 Putative SAM-dependent methyltransferase DOE78_15570 PF06491 Disulphide isomerase DOE78_15575 PF08712 Scaffold protein Nfu/NifU N terminal DOE78_15575 PF13769 Virulence factor DOE78_15580 PF16326 ABC transporter C-terminal domain DOE78_15580 PF12848 ABC transporter DOE78_15580 PF00005 ABC transporter DOE78_15585 PF01966 HD domain DOE78_15595 PF00255 Glutathione peroxidase DOE78_15605 PF01268 Formate--tetrahydrofolate ligase DOE78_15610 PF04204 Homoserine O-succinyltransferase DOE78_15615 PF02742 Iron dependent repressor, metal binding and dimerisation domain DOE78_15615 PF01325 Iron dependent repressor, N-terminal DNA binding domain DOE78_15620 PF01751 Toprim domain DOE78_15620 PF01131 DNA topoisomerase DOE78_15625 PF01979 Amidohydrolase family DOE78_15630 PF00266 Aminotransferase class-V DOE78_15635 PF01546 Peptidase family M20/M25/M40 DOE78_15640 PF17853 GGDEF-like domain DOE78_15640 PF07905 Purine catabolism regulatory protein-like family DOE78_15640 PF13556 PucR C-terminal helix-turn-helix domain DOE78_15645 PF09349 OHCU decarboxylase DOE78_15645 PF01014 Uricase DOE78_15650 PF13454 FAD-NAD(P)-binding DOE78_15655 PF00576 HIUase/Transthyretin family DOE78_15660 PF00355 Rieske [2Fe-2S] domain DOE78_15670 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_15675 PF00005 ABC transporter DOE78_15680 PF02417 Chromate transporter DOE78_15685 PF02417 Chromate transporter DOE78_15695 PF01425 Amidase DOE78_15705 PF01966 HD domain DOE78_15705 PF00072 Response regulator receiver domain DOE78_15710 PF00313 'Cold-shock' DNA-binding domain DOE78_15720 PF13456 Reverse transcriptase-like DOE78_15725 PF13456 Reverse transcriptase-like DOE78_15750 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DOE78_15750 PF01367 5'-3' exonuclease, C-terminal SAM fold DOE78_15760 PF00350 Dynamin family DOE78_15765 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family DOE78_15770 PF02797 Chalcone and stilbene synthases, C-terminal domain DOE78_15770 PF00195 Chalcone and stilbene synthases, N-terminal domain DOE78_15795 PF09125 Cytochrome C oxidase subunit II, transmembrane DOE78_15795 PF00116 Cytochrome C oxidase subunit II, periplasmic domain DOE78_15800 PF00115 Cytochrome C and Quinol oxidase polypeptide I DOE78_15805 PF02074 Carboxypeptidase Taq (M32) metallopeptidase DOE78_15810 PF13307 Helicase C-terminal domain DOE78_15815 PF02926 THUMP domain DOE78_15815 PF01170 Putative RNA methylase family UPF0020 DOE78_15825 PF05103 DivIVA protein DOE78_15830 PF06908 YspA SLOG family DOE78_15835 PF11122 Inner spore coat protein D DOE78_15840 PF13482 RNase_H superfamily DOE78_15845 PF00270 DEAD/DEAH box helicase DOE78_15845 PF00271 Helicase conserved C-terminal domain DOE78_15845 PF09369 Domain of unknown function (DUF1998) DOE78_15850 PF13545 Crp-like helix-turn-helix domain DOE78_15850 PF00027 Cyclic nucleotide-binding domain DOE78_15860 PF14179 YppG-like protein DOE78_15880 PF10720 Protein of unknown function (DUF2515) DOE78_15885 PF03838 Recombination protein U DOE78_15890 PF00905 Penicillin binding protein transpeptidase domain DOE78_15890 PF00912 Transglycosylase DOE78_15900 PF10576 Iron-sulfur binding domain of endonuclease III DOE78_15900 PF00633 Helix-hairpin-helix motif DOE78_15900 PF00730 HhH-GPD superfamily base excision DNA repair protein DOE78_15905 PF07261 Replication initiation and membrane attachment DOE78_15910 PF00152 tRNA synthetases class II (D, K and N) DOE78_15910 PF01336 OB-fold nucleic acid binding domain DOE78_15915 PF00155 Aminotransferase class I and II DOE78_15925 PF14084 Protein of unknown function (DUF4264) DOE78_15935 PF04851 Type III restriction enzyme, res subunit DOE78_15935 PF13307 Helicase C-terminal domain DOE78_15935 PF00929 Exonuclease DOE78_15940 PF02261 Aspartate decarboxylase DOE78_15945 PF02569 Pantoate-beta-alanine ligase DOE78_15950 PF02548 Ketopantoate hydroxymethyltransferase DOE78_15955 PF03099 Biotin/lipoate A/B protein ligase family DOE78_15955 PF02237 Biotin protein ligase C terminal domain DOE78_15955 PF08279 HTH domain DOE78_15960 PF13735 tRNA nucleotidyltransferase domain 2 putative DOE78_15960 PF01743 Poly A polymerase head domain DOE78_15960 PF12627 Probable RNA and SrmB- binding site of polymerase A DOE78_15965 PF00534 Glycosyl transferases group 1 DOE78_15965 PF13439 Glycosyltransferase Family 4 DOE78_15970 PF02585 GlcNAc-PI de-N-acetylase DOE78_15975 PF02142 MGS-like domain DOE78_15980 PF05173 Dihydrodipicolinate reductase, C-terminus DOE78_15980 PF01113 Dihydrodipicolinate reductase, N-terminus DOE78_15985 PF03819 MazG nucleotide pyrophosphohydrolase domain DOE78_15990 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DOE78_15990 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DOE78_15995 PF04298 Putative neutral zinc metallopeptidase DOE78_16000 PF09577 Sporulation protein YpjB (SpoYpjB) DOE78_16005 PF07187 Protein of unknown function (DUF1405) DOE78_16010 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DOE78_16010 PF00032 Cytochrome b(C-terminal)/b6/petD DOE78_16015 PF00033 Cytochrome b/b6/petB DOE78_16020 PF00355 Rieske [2Fe-2S] domain DOE78_16025 PF10673 Protein of unknown function (DUF2487) DOE78_16030 PF08858 IDEAL domain DOE78_16030 PF08864 UPF0302 domain DOE78_16045 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DOE78_16050 PF01842 ACT domain DOE78_16050 PF02153 Prephenate dehydrogenase DOE78_16055 PF00155 Aminotransferase class I and II DOE78_16060 PF07736 Chorismate mutase type I DOE78_16065 PF01761 3-dehydroquinate synthase DOE78_16070 PF01264 Chorismate synthase DOE78_16075 PF01739 CheR methyltransferase, SAM binding domain DOE78_16075 PF03705 CheR methyltransferase, all-alpha domain DOE78_16080 PF00334 Nucleoside diphosphate kinase DOE78_16085 PF00348 Polyprenyl synthetase DOE78_16090 PF01209 ubiE/COQ5 methyltransferase family DOE78_16095 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 DOE78_16100 PF02081 Tryptophan RNA-binding attenuator protein DOE78_16105 PF01227 GTP cyclohydrolase I DOE78_16110 PF00216 Bacterial DNA-binding protein DOE78_16115 PF09547 Stage IV sporulation protein A (spore_IV_A) DOE78_16125 PF10966 Protein of unknown function (DUF2768) DOE78_16130 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus DOE78_16130 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus DOE78_16135 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal DOE78_16135 PF01926 50S ribosome-binding GTPase DOE78_16145 PF14045 YIEGIA protein DOE78_16155 PF14140 YpzI-like protein DOE78_16160 PF01070 FMN-dependent dehydrogenase DOE78_16165 PF00575 S1 RNA binding domain DOE78_16170 PF01553 Acyltransferase DOE78_16175 PF02224 Cytidylate kinase DOE78_16180 PF17313 Family of unknown function (DUF5359) DOE78_16190 PF14620 YpeB sporulation DOE78_16190 PF03413 Peptidase propeptide and YPEB domain DOE78_16195 PF01471 Putative peptidoglycan binding domain DOE78_16195 PF07486 Cell Wall Hydrolase DOE78_16200 PF13367 PrsW family intramembrane metalloprotease DOE78_16205 PF17763 Glutaminase/Asparaginase C-terminal domain DOE78_16205 PF00710 Asparaginase, N-terminal DOE78_16215 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DOE78_16215 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DOE78_16220 PF05389 Negative regulator of genetic competence (MecA) DOE78_16225 PF13411 MerR HTH family regulatory protein DOE78_16225 PF02607 B12 binding domain DOE78_16225 PF02310 B12 binding domain DOE78_16230 PF00149 Calcineurin-like phosphoesterase DOE78_16245 PF10864 Protein of unknown function (DUF2663) DOE78_16255 PF02517 CPBP intramembrane metalloprotease DOE78_16260 PF00271 Helicase conserved C-terminal domain DOE78_16260 PF00270 DEAD/DEAH box helicase DOE78_16275 PF12822 ECF transporter, substrate-specific component DOE78_16280 PF01368 DHH family DOE78_16280 PF02833 DHHA2 domain DOE78_16285 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DOE78_16285 PF01842 ACT domain DOE78_16285 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DOE78_16290 PF02811 PHP domain DOE78_16295 PF01464 Transglycosylase SLT domain DOE78_16295 PF01551 Peptidase family M23 DOE78_16295 PF10145 Phage-related minor tail protein DOE78_16305 PF04542 Sigma-70 region 2 DOE78_16305 PF08281 Sigma-70, region 4 DOE78_16315 PF00486 Transcriptional regulatory protein, C terminal DOE78_16315 PF00072 Response regulator receiver domain DOE78_16320 PF01578 Cytochrome C assembly protein DOE78_16325 PF05140 ResB-like family DOE78_16330 PF00578 AhpC/TSA family DOE78_16335 PF01479 S4 domain DOE78_16335 PF00849 RNA pseudouridylate synthase DOE78_16340 PF07670 Nucleoside recognition DOE78_16345 PF07670 Nucleoside recognition DOE78_16350 PF00768 D-alanyl-D-alanine carboxypeptidase DOE78_16350 PF07943 Penicillin-binding protein 5, C-terminal domain DOE78_16355 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DOE78_16355 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DOE78_16360 PF13047 Protein of unknown function (DUF3907) DOE78_16370 PF04079 Segregation and condensation complex subunit ScpB DOE78_16375 PF02616 Segregation and condensation protein ScpA DOE78_16380 PF03745 Domain of unknown function (DUF309) DOE78_16385 PF00583 Acetyltransferase (GNAT) family DOE78_16390 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain DOE78_16390 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain DOE78_16395 PF03323 Bacillus/Clostridium GerA spore germination protein DOE78_16400 PF14097 Stage V sporulation protein AE1 DOE78_16405 PF13782 Stage V sporulation protein AB DOE78_16410 PF12164 Stage V sporulation protein AA DOE78_16415 PF04539 Sigma-70 region 3 DOE78_16415 PF04542 Sigma-70 region 2 DOE78_16415 PF04545 Sigma-70, region 4 DOE78_16420 PF13581 Histidine kinase-like ATPase domain DOE78_16425 PF01740 STAS domain DOE78_16430 PF00768 D-alanyl-D-alanine carboxypeptidase DOE78_16430 PF07943 Penicillin-binding protein 5, C-terminal domain DOE78_16435 PF02885 Glycosyl transferase family, helical bundle domain DOE78_16435 PF00591 Glycosyl transferase family, a/b domain DOE78_16435 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain DOE78_16440 PF01048 Phosphorylase superfamily DOE78_16445 PF01676 Metalloenzyme superfamily DOE78_16450 PF02899 Phage integrase, N-terminal SAM-like domain DOE78_16450 PF00589 Phage integrase family DOE78_16455 PF14004 Protein of unknown function (DUF4227) DOE78_16460 PF01475 Ferric uptake regulator family DOE78_16465 PF01944 Stage II sporulation protein M DOE78_16480 PF00293 NUDIX domain DOE78_16485 PF13072 Mother cell inhibitor of FtsZ DOE78_16490 PF00248 Aldo/keto reductase family DOE78_16500 PF01144 Coenzyme A transferase DOE78_16505 PF01144 Coenzyme A transferase DOE78_16510 PF00682 HMGL-like DOE78_16515 PF00155 Aminotransferase class I and II DOE78_16515 PF00392 Bacterial regulatory proteins, gntR family DOE78_16520 PF00892 EamA-like transporter family DOE78_16545 PF12146 Serine aminopeptidase, S33 DOE78_16555 PF01521 Iron-sulphur cluster biosynthesis DOE78_16565 PF08863 YolD-like protein DOE78_16570 PF11798 IMS family HHH motif DOE78_16570 PF11799 impB/mucB/samB family C-terminal domain DOE78_16570 PF00817 impB/mucB/samB family DOE78_16580 PF00106 short chain dehydrogenase DOE78_16585 PF00155 Aminotransferase class I and II DOE78_16585 PF00392 Bacterial regulatory proteins, gntR family DOE78_16590 PF00892 EamA-like transporter family DOE78_16595 PF00753 Metallo-beta-lactamase superfamily DOE78_16600 PF03807 NADP oxidoreductase coenzyme F420-dependent DOE78_16600 PF14748 Pyrroline-5-carboxylate reductase dimerisation DOE78_16610 PF00374 Nickel-dependent hydrogenase DOE78_16615 PF14720 NiFe/NiFeSe hydrogenase small subunit C-terminal DOE78_16615 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DOE78_16630 PF01924 Hydrogenase formation hypA family DOE78_16635 PF01455 HupF/HypC family DOE78_16640 PF01300 Telomere recombination DOE78_16640 PF00708 Acylphosphatase DOE78_16640 PF17788 HypF Kae1-like domain DOE78_16640 PF07503 HypF finger DOE78_16645 PF02492 CobW/HypB/UreG, nucleotide-binding domain DOE78_16665 PF00753 Metallo-beta-lactamase superfamily DOE78_16665 PF12706 Beta-lactamase superfamily domain DOE78_16680 PF13732 Domain of unknown function (DUF4162) DOE78_16680 PF00005 ABC transporter DOE78_16685 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain DOE78_16685 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain DOE78_16690 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain DOE78_16690 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase DOE78_16695 PF11799 impB/mucB/samB family C-terminal domain DOE78_16695 PF11798 IMS family HHH motif DOE78_16695 PF00817 impB/mucB/samB family DOE78_16700 PF01584 CheW-like domain DOE78_16705 PF07687 Peptidase dimerisation domain DOE78_16705 PF01546 Peptidase family M20/M25/M40 DOE78_16710 PF01039 Carboxyl transferase domain DOE78_16720 PF03734 L,D-transpeptidase catalytic domain DOE78_16725 PF11728 Putative aromatic acid exporter C-terminal domain DOE78_16725 PF06081 Aromatic acid exporter family member 1 DOE78_16730 PF06491 Disulphide isomerase DOE78_16740 PF01642 Methylmalonyl-CoA mutase DOE78_16740 PF02310 B12 binding domain DOE78_16745 PF01642 Methylmalonyl-CoA mutase DOE78_16750 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DOE78_16750 PF02817 e3 binding domain DOE78_16750 PF00364 Biotin-requiring enzyme DOE78_16755 PF02779 Transketolase, pyrimidine binding domain DOE78_16755 PF02780 Transketolase, C-terminal domain DOE78_16760 PF00676 Dehydrogenase E1 component DOE78_16765 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE78_16765 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DOE78_16770 PF00871 Acetokinase family DOE78_16775 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DOE78_16775 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain DOE78_16780 PF01515 Phosphate acetyl/butaryl transferase DOE78_16785 PF00989 PAS fold DOE78_16785 PF00158 Sigma-54 interaction domain DOE78_16785 PF02954 Bacterial regulatory protein, Fis family DOE78_16795 PF03009 Glycerophosphoryl diester phosphodiesterase family DOE78_16815 PF08769 Sporulation initiation factor Spo0A C terminal DOE78_16815 PF00072 Response regulator receiver domain DOE78_16820 PF05580 SpoIVB peptidase S55 DOE78_16820 PF17820 PDZ domain DOE78_16825 PF13476 AAA domain DOE78_16830 PF02863 Arginine repressor, C-terminal domain DOE78_16830 PF01316 Arginine repressor, DNA binding domain DOE78_16835 PF01479 S4 domain DOE78_16835 PF01728 FtsJ-like methyltransferase DOE78_16840 PF02780 Transketolase, C-terminal domain DOE78_16840 PF13292 1-deoxy-D-xylulose-5-phosphate synthase DOE78_16840 PF02779 Transketolase, pyrimidine binding domain DOE78_16845 PF00348 Polyprenyl synthetase DOE78_16850 PF02609 Exonuclease VII small subunit DOE78_16855 PF13742 OB-fold nucleic acid binding domain DOE78_16855 PF02601 Exonuclease VII, large subunit DOE78_16860 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain DOE78_16860 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain DOE78_16865 PF01029 NusB family DOE78_16870 PF03780 Asp23 family, cell envelope-related function DOE78_16875 PF02785 Biotin carboxylase C-terminal domain DOE78_16875 PF00289 Biotin carboxylase, N-terminal domain DOE78_16875 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DOE78_16880 PF00364 Biotin-requiring enzyme DOE78_16890 PF02547 Queuosine biosynthesis protein DOE78_16900 PF13185 GAF domain DOE78_16900 PF07730 Histidine kinase DOE78_16905 PF00072 Response regulator receiver domain DOE78_16905 PF00196 Bacterial regulatory proteins, luxR family DOE78_16910 PF12685 SpoIIIAH-like protein DOE78_16920 PF09581 Stage III sporulation protein AF (Spore_III_AF) DOE78_16925 PF09546 Stage III sporulation protein AE (spore_III_AE) DOE78_16930 PF06686 Stage III sporulation protein AC/AD protein family DOE78_16935 PF06686 Stage III sporulation protein AC/AD protein family DOE78_16940 PF09548 Stage III sporulation protein AB (spore_III_AB) DOE78_16955 PF01132 Elongation factor P (EF-P) OB domain DOE78_16955 PF09285 Elongation factor P, C-terminal DOE78_16955 PF08207 Elongation factor P (EF-P) KOW-like domain DOE78_16960 PF00557 Metallopeptidase family M24 DOE78_16960 PF01321 Creatinase/Prolidase N-terminal domain DOE78_16965 PF11085 Conserved membrane protein YqhR DOE78_16980 PF01734 Patatin-like phospholipase DOE78_16990 PF03477 ATP cone domain DOE78_16990 PF00317 Ribonucleotide reductase, all-alpha domain DOE78_16990 PF02867 Ribonucleotide reductase, barrel domain DOE78_17000 PF03099 Biotin/lipoate A/B protein ligase family DOE78_17005 PF00581 Rhodanese-like domain DOE78_17010 PF02347 Glycine cleavage system P-protein DOE78_17015 PF02347 Glycine cleavage system P-protein DOE78_17020 PF01571 Aminomethyltransferase folate-binding domain DOE78_17020 PF08669 Glycine cleavage T-protein C-terminal barrel domain DOE78_17025 PF00271 Helicase conserved C-terminal domain DOE78_17025 PF00176 SNF2 family N-terminal domain DOE78_17030 PF11079 Bacterial protein YqhG of unknown function DOE78_17060 PF07963 Prokaryotic N-terminal methylation motif DOE78_17065 PF00482 Type II secretion system (T2SS), protein F DOE78_17070 PF00437 Type II/IV secretion system protein DOE78_17080 PF03960 ArsC family DOE78_17090 PF11117 Protein of unknown function (DUF2626) DOE78_17100 PF00753 Metallo-beta-lactamase superfamily DOE78_17115 PF00246 Zinc carboxypeptidase DOE78_17115 PF01476 LysM domain DOE78_17120 PF00884 Sulfatase DOE78_17125 PF00480 ROK family DOE78_17135 PF03323 Bacillus/Clostridium GerA spore germination protein DOE78_17140 PF01694 Rhomboid family DOE78_17160 PF01812 5-formyltetrahydrofolate cyclo-ligase family DOE78_17165 PF00471 Ribosomal protein L33 DOE78_17175 PF00483 Nucleotidyl transferase DOE78_17180 PF13439 Glycosyltransferase Family 4 DOE78_17180 PF00534 Glycosyl transferases group 1 DOE78_17200 PF01895 PhoU domain DOE78_17205 PF00005 ABC transporter DOE78_17210 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_17215 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_17220 PF12849 PBP superfamily domain DOE78_17230 PF07690 Major Facilitator Superfamily DOE78_17235 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain DOE78_17235 PF02777 Iron/manganese superoxide dismutases, C-terminal domain DOE78_17240 PF00325 Bacterial regulatory proteins, crp family DOE78_17240 PF00027 Cyclic nucleotide-binding domain DOE78_17245 PF04306 Protein of unknown function (DUF456) DOE78_17250 PF02690 Na+/Pi-cotransporter DOE78_17255 PF06691 Protein of unknown function (DUF1189) DOE78_17265 PF04551 GcpE protein DOE78_17280 PF01475 Ferric uptake regulator family DOE78_17285 PF00950 ABC 3 transport family DOE78_17290 PF00005 ABC transporter DOE78_17295 PF11116 Protein of unknown function (DUF2624) DOE78_17300 PF01261 Xylose isomerase-like TIM barrel DOE78_17305 PF00270 DEAD/DEAH box helicase DOE78_17305 PF00271 Helicase conserved C-terminal domain DOE78_17315 PF02401 LytB protein DOE78_17320 PF01784 NIF3 (NGG1p interacting factor 3) DOE78_17325 PF04816 tRNA (adenine(22)-N(1))-methyltransferase DOE78_17330 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DOE78_17335 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DOE78_17335 PF02770 Acyl-CoA dehydrogenase, middle domain DOE78_17335 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DOE78_17345 PF00140 Sigma-70 factor, region 1.2 DOE78_17345 PF03979 Sigma-70 factor, region 1.1 DOE78_17345 PF04545 Sigma-70, region 4 DOE78_17345 PF04542 Sigma-70 region 2 DOE78_17345 PF04539 Sigma-70 region 3 DOE78_17355 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 DOE78_17360 PF03618 Kinase/pyrophosphorylase DOE78_17365 PF00571 CBS domain DOE78_17365 PF08279 HTH domain DOE78_17370 PF02092 Glycyl-tRNA synthetase beta subunit DOE78_17375 PF02091 Glycyl-tRNA synthetase alpha subunit DOE78_17380 PF11967 Recombination protein O N terminal DOE78_17380 PF02565 Recombination protein O C terminal DOE78_17385 PF14006 YqzL-like protein DOE78_17390 PF01926 50S ribosome-binding GTPase DOE78_17390 PF07650 KH domain DOE78_17395 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DOE78_17400 PF01219 Prokaryotic diacylglycerol kinase DOE78_17410 PF01966 HD domain DOE78_17410 PF07697 7TM-HD extracellular DOE78_17410 PF07698 7TM receptor with intracellular HD hydrolase DOE78_17415 PF02562 PhoH-like protein DOE78_17420 PF06898 Putative stage IV sporulation protein YqfD DOE78_17425 PF07873 YabP family DOE78_17435 PF12127 SigmaW regulon antibacterial DOE78_17440 PF01972 Serine dehydrogenase proteinase DOE78_17440 PF01957 NfeD-like C-terminal, partner-binding DOE78_17445 PF09424 Yqey-like protein DOE78_17450 PF01165 Ribosomal protein S21 DOE78_17455 PF02690 Na+/Pi-cotransporter DOE78_17460 PF01791 DeoC/LacD family aldolase DOE78_17465 PF00919 Uncharacterized protein family UPF0004 DOE78_17465 PF01938 TRAM domain DOE78_17465 PF04055 Radical SAM superfamily DOE78_17470 PF04452 RNA methyltransferase DOE78_17480 PF01556 DnaJ C terminal domain DOE78_17480 PF00226 DnaJ domain DOE78_17480 PF00684 DnaJ central domain DOE78_17485 PF00012 Hsp70 protein DOE78_17490 PF01025 GrpE DOE78_17500 PF04055 Radical SAM superfamily DOE78_17500 PF06969 HemN C-terminal domain DOE78_17505 PF06421 GTP-binding protein LepA C-terminus DOE78_17505 PF00679 Elongation factor G C-terminus DOE78_17505 PF00009 Elongation factor Tu GTP binding domain DOE78_17505 PF03144 Elongation factor Tu domain 2 DOE78_17510 PF12438 Protein of unknown function (DUF3679) DOE78_17515 PF07454 Stage II sporulation protein P (SpoIIP) DOE78_17525 PF01649 Ribosomal protein S20 DOE78_17530 PF06144 DNA polymerase III, delta subunit DOE78_17535 PF14141 YqzM-like protein DOE78_17540 PF00753 Metallo-beta-lactamase superfamily DOE78_17540 PF13567 Domain of unknown function (DUF4131) DOE78_17540 PF03772 Competence protein DOE78_17545 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DOE78_17550 PF10531 SLBB domain DOE78_17555 PF14748 Pyrroline-5-carboxylate reductase dimerisation DOE78_17555 PF03807 NADP oxidoreductase coenzyme F420-dependent DOE78_17560 PF13649 Methyltransferase domain DOE78_17570 PF01966 HD domain DOE78_17575 PF01467 Cytidylyltransferase-like DOE78_17580 PF01985 CRS1 / YhbY (CRM) domain DOE78_17585 PF01488 Shikimate / quinate 5-dehydrogenase DOE78_17585 PF08501 Shikimate dehydrogenase substrate binding domain DOE78_17585 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DOE78_17590 PF01926 50S ribosome-binding GTPase DOE78_17600 PF08970 Sporulation inhibitor A DOE78_17605 PF02666 Phosphatidylserine decarboxylase DOE78_17610 PF01066 CDP-alcohol phosphatidyltransferase DOE78_17620 PF04542 Sigma-70 region 2 DOE78_17620 PF04545 Sigma-70, region 4 DOE78_17625 PF09501 Probable sporulation protein (Bac_small_yrzI) DOE78_17635 PF01048 Phosphorylase superfamily DOE78_17640 PF07423 Domain of unknown function (DUF1510) DOE78_17645 PF00905 Penicillin binding protein transpeptidase domain DOE78_17645 PF03717 Penicillin-binding Protein dimerisation domain DOE78_17650 PF03449 Transcription elongation factor, N-terminal DOE78_17650 PF01272 Transcription elongation factor, GreA/GreB, C-term DOE78_17655 PF00485 Phosphoribulokinase / Uridine kinase family DOE78_17675 PF02618 YceG-like family DOE78_17680 PF06949 Protein of unknown function (DUF1292) DOE78_17685 PF03652 Holliday junction resolvase DOE78_17690 PF06135 IreB regulatory phosphoprotein DOE78_17695 PF02272 DHHA1 domain DOE78_17695 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DOE78_17695 PF01411 tRNA synthetases class II (A) DOE78_17700 PF01594 AI-2E family transporter DOE78_17705 PF13056 Protein of unknown function (DUF3918) DOE78_17720 PF13538 UvrD-like helicase C-terminal domain DOE78_17720 PF14490 Helix-hairpin-helix containing domain DOE78_17720 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain DOE78_17725 PF13181 Tetratricopeptide repeat DOE78_17725 PF07719 Tetratricopeptide repeat DOE78_17735 PF00266 Aminotransferase class-V DOE78_17740 PF02082 Transcriptional regulator DOE78_17750 PF16193 AAA C-terminal domain DOE78_17750 PF05496 Holliday junction DNA helicase RuvB P-loop domain DOE78_17750 PF12002 MgsA AAA+ ATPase C terminal DOE78_17755 PF00899 ThiF family DOE78_17765 PF00152 tRNA synthetases class II (D, K and N) DOE78_17765 PF01336 OB-fold nucleic acid binding domain DOE78_17765 PF02938 GAD domain DOE78_17770 PF13393 Histidyl-tRNA synthetase DOE78_17770 PF03129 Anticodon binding domain DOE78_17775 PF01520 N-acetylmuramoyl-L-alanine amidase DOE78_17775 PF08239 Bacterial SH3 domain DOE78_17780 PF02580 D-Tyr-tRNA(Tyr) deacylase DOE78_17785 PF04607 Region found in RelA / SpoT proteins DOE78_17785 PF02824 TGS domain DOE78_17785 PF13291 ACT domain DOE78_17790 PF00156 Phosphoribosyl transferase domain DOE78_17795 PF01368 DHH family DOE78_17795 PF17768 RecJ OB domain DOE78_17795 PF10141 Single-strand DNA-specific exonuclease, C terminal domain DOE78_17795 PF02272 DHHA1 domain DOE78_17800 PF01545 Cation efflux family DOE78_17800 PF16916 Dimerisation domain of Zinc Transporter DOE78_17805 PF02355 Protein export membrane protein DOE78_17805 PF07549 SecD/SecF GG Motif DOE78_17810 PF13797 Post-transcriptional regulator DOE78_17815 PF14667 Polysaccharide biosynthesis C-terminal domain DOE78_17815 PF01943 Polysaccharide biosynthesis protein DOE78_17825 PF12670 Protein of unknown function (DUF3792) DOE78_17830 PF02699 Preprotein translocase subunit DOE78_17835 PF01702 Queuine tRNA-ribosyltransferase DOE78_17840 PF02547 Queuosine biosynthesis protein DOE78_17845 PF11146 Protein of unknown function (DUF2905) DOE78_17850 PF05496 Holliday junction DNA helicase RuvB P-loop domain DOE78_17850 PF17864 RuvB AAA lid domain DOE78_17850 PF05491 RuvB C-terminal winged helix domain DOE78_17855 PF01330 RuvA N terminal domain DOE78_17855 PF07499 RuvA, C-terminal domain DOE78_17860 PF08977 Bypass of Forespore C, N terminal DOE78_17860 PF08955 BofC C-terminal domain DOE78_17875 PF01476 LysM domain DOE78_17880 PF02445 Quinolinate synthetase A protein DOE78_17885 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain DOE78_17885 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain DOE78_17890 PF00890 FAD binding domain DOE78_17895 PF00266 Aminotransferase class-V DOE78_17900 PF08279 HTH domain DOE78_17900 PF02829 3H domain DOE78_17905 PF01842 ACT domain DOE78_17905 PF00800 Prephenate dehydratase DOE78_17910 PF01842 ACT domain DOE78_17915 PF09269 Domain of unknown function (DUF1967) DOE78_17915 PF01926 50S ribosome-binding GTPase DOE78_17915 PF01018 GTP1/OBG DOE78_17920 PF14682 Sporulation initiation phospho-transferase B, C-terminal DOE78_17920 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain DOE78_17925 PF01016 Ribosomal L27 protein DOE78_17930 PF04327 Cysteine protease Prp DOE78_17935 PF00829 Ribosomal prokaryotic L21 protein DOE78_17940 PF00575 S1 RNA binding domain DOE78_17940 PF10150 Ribonuclease E/G family DOE78_17945 PF02163 Peptidase family M50 DOE78_17950 PF01551 Peptidase family M23 DOE78_17955 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DOE78_17960 PF03775 Septum formation inhibitor MinC, C-terminal domain DOE78_17965 PF04093 rod shape-determining protein MreD DOE78_17970 PF04085 rod shape-determining protein MreC DOE78_17980 PF04002 RadC-like JAB domain DOE78_17990 PF04002 RadC-like JAB domain DOE78_17995 PF02545 Maf-like protein DOE78_18005 PF00072 Response regulator receiver domain DOE78_18005 PF00990 Diguanylate cyclase, GGDEF domain DOE78_18010 PF08245 Mur ligase middle domain DOE78_18010 PF02875 Mur ligase family, glutamate ligase domain DOE78_18015 PF10458 Valyl tRNA synthetase tRNA binding arm DOE78_18015 PF08264 Anticodon-binding domain of tRNA DOE78_18015 PF00133 tRNA synthetases class I (I, L, M and V) DOE78_18030 PF01476 LysM domain DOE78_18035 PF00202 Aminotransferase class-III DOE78_18040 PF00490 Delta-aminolevulinic acid dehydratase DOE78_18050 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain DOE78_18050 PF03900 Porphobilinogen deaminase, C-terminal domain DOE78_18055 PF01578 Cytochrome C assembly protein DOE78_18060 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain DOE78_18060 PF01488 Shikimate / quinate 5-dehydrogenase DOE78_18060 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain DOE78_18070 PF01926 50S ribosome-binding GTPase DOE78_18075 PF02190 ATP-dependent protease La (LON) substrate-binding domain DOE78_18075 PF00004 ATPase family associated with various cellular activities (AAA) DOE78_18075 PF05362 Lon protease (S16) C-terminal proteolytic domain DOE78_18080 PF05362 Lon protease (S16) C-terminal proteolytic domain DOE78_18080 PF00004 ATPase family associated with various cellular activities (AAA) DOE78_18085 PF06689 ClpX C4-type zinc finger DOE78_18085 PF07724 AAA domain (Cdc48 subfamily) DOE78_18085 PF10431 C-terminal, D2-small domain, of ClpB protein DOE78_18090 PF05697 Bacterial trigger factor protein (TF) DOE78_18090 PF05698 Bacterial trigger factor protein (TF) C-terminus DOE78_18090 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase DOE78_18100 PF00694 Aconitase C-terminal domain DOE78_18105 PF00330 Aconitase family (aconitate hydratase) DOE78_18115 PF00682 HMGL-like DOE78_18115 PF08502 LeuA allosteric (dimerisation) domain DOE78_18120 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain DOE78_18120 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain DOE78_18125 PF10369 Small subunit of acetolactate synthase DOE78_18125 PF01842 ACT domain DOE78_18130 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DOE78_18130 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DOE78_18130 PF00205 Thiamine pyrophosphate enzyme, central domain DOE78_18135 PF01063 Amino-transferase class IV DOE78_18140 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_18140 PF12911 N-terminal TM domain of oligopeptide transport permease C DOE78_18145 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_18150 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle DOE78_18155 PF00005 ABC transporter DOE78_18155 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DOE78_18160 PF08352 Oligopeptide/dipeptide transporter, C-terminal region DOE78_18160 PF00005 ABC transporter DOE78_18170 PF12850 Calcineurin-like phosphoesterase superfamily domain DOE78_18175 PF01725 Ham1 family DOE78_18185 PF10646 Sporulation and spore germination DOE78_18190 PF01177 Asp/Glu/Hydantoin racemase DOE78_18195 PF01047 MarR family DOE78_18200 PF00196 Bacterial regulatory proteins, luxR family DOE78_18205 PF03061 Thioesterase superfamily DOE78_18210 PF13183 4Fe-4S dicluster domain DOE78_18210 PF13085 2Fe-2S iron-sulfur cluster binding domain DOE78_18215 PF02910 Fumarate reductase flavoprotein C-term DOE78_18215 PF00890 FAD binding domain DOE78_18220 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit DOE78_18225 PF10702 Protein of unknown function (DUF2507) DOE78_18230 PF00696 Amino acid kinase family DOE78_18230 PF13840 ACT domain DOE78_18235 PF08459 UvrC Helix-hairpin-helix N-terminal DOE78_18235 PF01541 GIY-YIG catalytic domain DOE78_18235 PF02151 UvrB/uvrC motif DOE78_18240 PF00085 Thioredoxin DOE78_18245 PF01012 Electron transfer flavoprotein domain DOE78_18245 PF00766 Electron transfer flavoprotein FAD-binding domain DOE78_18250 PF01012 Electron transfer flavoprotein domain DOE78_18255 PF00378 Enoyl-CoA hydratase/isomerase DOE78_18260 PF00440 Bacterial regulatory proteins, tetR family DOE78_18260 PF08359 YsiA-like protein, C-terminal region DOE78_18265 PF13193 AMP-binding enzyme C-terminal domain DOE78_18265 PF00501 AMP-binding enzyme DOE78_18270 PF03994 Domain of Unknown Function (DUF350) DOE78_18275 PF00488 MutS domain V DOE78_18275 PF01713 Smr domain DOE78_18280 PF02811 PHP domain DOE78_18280 PF14791 DNA polymerase beta thumb DOE78_18280 PF14716 Helix-hairpin-helix domain DOE78_18285 PF02674 Colicin V production protein DOE78_18290 PF05164 Cell division protein ZapA DOE78_18300 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain DOE78_18300 PF03483 B3/4 domain DOE78_18300 PF03484 tRNA synthetase B5 domain DOE78_18300 PF01588 Putative tRNA binding domain DOE78_18300 PF03147 Ferredoxin-fold anticodon binding domain DOE78_18305 PF01409 tRNA synthetases class II core domain (F) DOE78_18305 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain DOE78_18310 PF08032 RNA 2'-O ribose methyltransferase substrate binding DOE78_18310 PF00588 SpoU rRNA Methylase family DOE78_18315 PF14098 Small, acid-soluble spore protein I DOE78_18320 PF05343 M42 glutamyl aminopeptidase DOE78_18335 PF09335 SNARE associated Golgi protein DOE78_18340 PF06961 Protein of unknown function (DUF1294) DOE78_18345 PF00453 Ribosomal protein L20 DOE78_18350 PF01632 Ribosomal protein L35 DOE78_18355 PF05198 Translation initiation factor IF-3, N-terminal domain DOE78_18355 PF00707 Translation initiation factor IF-3, C-terminal domain DOE78_18360 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) DOE78_18360 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain DOE78_18360 PF03129 Anticodon binding domain DOE78_18360 PF02824 TGS domain DOE78_18365 PF08812 YtxC-like family DOE78_18370 PF07319 Primosomal protein DnaI N-terminus DOE78_18370 PF01695 IstB-like ATP binding protein DOE78_18380 PF03477 ATP cone domain DOE78_18390 PF02675 S-adenosylmethionine decarboxylase DOE78_18395 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DOE78_18395 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DOE78_18400 PF01121 Dephospho-CoA kinase DOE78_18405 PF02659 Putative manganese efflux pump DOE78_18410 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain DOE78_18410 PF06827 Zinc finger found in FPG and IleRS DOE78_18410 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain DOE78_18415 PF01367 5'-3' exonuclease, C-terminal SAM fold DOE78_18415 PF00476 DNA polymerase family A DOE78_18415 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DOE78_18420 PF01145 SPFH domain / Band 7 family DOE78_18425 PF01145 SPFH domain / Band 7 family DOE78_18430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_18430 PF00512 His Kinase A (phospho-acceptor) domain DOE78_18430 PF00989 PAS fold DOE78_18430 PF16736 Single Cache-like DOE78_18435 PF00072 Response regulator receiver domain DOE78_18435 PF00486 Transcriptional regulatory protein, C terminal DOE78_18445 PF00056 lactate/malate dehydrogenase, NAD binding domain DOE78_18445 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain DOE78_18450 PF00180 Isocitrate/isopropylmalate dehydrogenase DOE78_18455 PF00285 Citrate synthase, C-terminal domain DOE78_18460 PF04284 Protein of unknown function (DUF441) DOE78_18465 PF01594 AI-2E family transporter DOE78_18470 PF04186 FxsA cytoplasmic membrane protein DOE78_18475 PF00391 PEP-utilising enzyme, mobile domain DOE78_18475 PF00224 Pyruvate kinase, barrel domain DOE78_18475 PF02887 Pyruvate kinase, alpha/beta domain DOE78_18480 PF00365 Phosphofructokinase DOE78_18485 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit DOE78_18490 PF01039 Carboxyl transferase domain DOE78_18490 PF17848 Acetyl-coA carboxylase zinc finger domain DOE78_18495 PF00392 Bacterial regulatory proteins, gntR family DOE78_18500 PF00390 Malic enzyme, N-terminal domain DOE78_18500 PF03949 Malic enzyme, NAD binding domain DOE78_18505 PF07733 Bacterial DNA polymerase III alpha NTPase domain DOE78_18505 PF01336 OB-fold nucleic acid binding domain DOE78_18505 PF17657 Bacterial DNA polymerase III alpha subunit finger domain DOE78_18505 PF14579 Helix-hairpin-helix motif DOE78_18505 PF02811 PHP domain DOE78_18510 PF14034 Sporulation protein YtrH DOE78_18520 PF02272 DHHA1 domain DOE78_18520 PF01368 DHH family DOE78_18530 PF00392 Bacterial regulatory proteins, gntR family DOE78_18530 PF00571 CBS domain DOE78_18530 PF07085 DRTGG domain DOE78_18530 PF03061 Thioesterase superfamily DOE78_18545 PF00557 Metallopeptidase family M24 DOE78_18545 PF01321 Creatinase/Prolidase N-terminal domain DOE78_18550 PF05222 Alanine dehydrogenase/PNT, N-terminal domain DOE78_18550 PF01262 Alanine dehydrogenase/PNT, C-terminal domain DOE78_18555 PF00912 Transglycosylase DOE78_18555 PF00905 Penicillin binding protein transpeptidase domain DOE78_18560 PF00582 Universal stress protein family DOE78_18565 PF14698 Argininosuccinate lyase C-terminal DOE78_18565 PF00206 Lyase DOE78_18570 PF00764 Arginosuccinate synthase DOE78_18580 PF00149 Calcineurin-like phosphoesterase DOE78_18580 PF02872 5'-nucleotidase, C-terminal domain DOE78_18585 PF00994 Probable molybdopterin binding domain DOE78_18595 PF00871 Acetokinase family DOE78_18600 PF02384 N-6 DNA Methylase DOE78_18605 PF08534 Redoxin DOE78_18610 PF09579 Sporulation protein YtfJ (Spore_YtfJ) DOE78_18615 PF11167 Protein of unknown function (DUF2953) DOE78_18620 PF06271 RDD family DOE78_18625 PF01343 Peptidase family S49 DOE78_18630 PF01513 ATP-NAD kinase DOE78_18640 PF00892 EamA-like transporter family DOE78_18645 PF13193 AMP-binding enzyme C-terminal domain DOE78_18645 PF00501 AMP-binding enzyme DOE78_18650 PF00269 Small, acid-soluble spore proteins, alpha/beta type DOE78_18655 PF02926 THUMP domain DOE78_18655 PF02568 Thiamine biosynthesis protein (ThiI) DOE78_18660 PF00266 Aminotransferase class-V DOE78_18665 PF06160 Septation ring formation regulator, EzrA DOE78_18670 PF02811 PHP domain DOE78_18675 PF00440 Bacterial regulatory proteins, tetR family DOE78_18680 PF13185 GAF domain DOE78_18685 PF01053 Cys/Met metabolism PLP-dependent enzyme DOE78_18690 PF00990 Diguanylate cyclase, GGDEF domain DOE78_18700 PF01479 S4 domain DOE78_18700 PF00163 Ribosomal protein S4/S9 N-terminal domain DOE78_18730 PF01551 Peptidase family M23 DOE78_18785 PF01520 N-acetylmuramoyl-L-alanine amidase DOE78_18785 PF05036 Sporulation related domain DOE78_18900 PF00145 C-5 cytosine-specific DNA methylase DOE78_18935 PF00145 C-5 cytosine-specific DNA methylase DOE78_18960 PF02511 Thymidylate synthase complementing protein DOE78_18965 PF00692 dUTPase DOE78_18990 PF13638 PIN domain DOE78_18990 PF02562 PhoH-like protein DOE78_19000 PF02867 Ribonucleotide reductase, barrel domain DOE78_19000 PF17975 Ribonucleotide reductase alpha domain DOE78_19030 PF00085 Thioredoxin DOE78_19040 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain DOE78_19040 PF01367 5'-3' exonuclease, C-terminal SAM fold DOE78_19040 PF00476 DNA polymerase family A DOE78_19040 PF01612 3'-5' exonuclease DOE78_19160 PF01479 S4 domain DOE78_19160 PF00579 tRNA synthetases class I (W and Y) DOE78_19165 PF00905 Penicillin binding protein transpeptidase domain DOE78_19165 PF00912 Transglycosylase DOE78_19170 PF00501 AMP-binding enzyme DOE78_19170 PF13193 AMP-binding enzyme C-terminal domain DOE78_19175 PF00583 Acetyltransferase (GNAT) family DOE78_19180 PF00571 CBS domain DOE78_19185 PF00850 Histone deacetylase domain DOE78_19190 PF13677 Membrane MotB of proton-channel complex MotA/MotB DOE78_19190 PF00691 OmpA family DOE78_19195 PF01618 MotA/TolQ/ExbB proton channel family DOE78_19200 PF00356 Bacterial regulatory proteins, lacI family DOE78_19205 PF00793 DAHP synthetase I family DOE78_19205 PF01817 Chorismate mutase type II DOE78_19210 PF02491 SHS2 domain inserted in FTSA DOE78_19215 PF11009 Protein of unknown function (DUF2847) DOE78_19220 PF12732 YtxH-like protein DOE78_19230 PF02073 Thermophilic metalloprotease (M29) DOE78_19235 PF08245 Mur ligase middle domain DOE78_19235 PF02875 Mur ligase family, glutamate ligase domain DOE78_19235 PF01225 Mur ligase family, catalytic domain DOE78_19250 PF01580 FtsK/SpoIIIE family DOE78_19250 PF09397 Ftsk gamma domain DOE78_19250 PF17854 FtsK alpha domain DOE78_19305 PF14165 YtzH-like protein DOE78_19310 PF01636 Phosphotransferase enzyme family DOE78_19315 PF00128 Alpha amylase, catalytic domain DOE78_19315 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DOE78_19315 PF17999 Pullulanase N1-terminal domain DOE78_19320 PF00781 Diacylglycerol kinase catalytic domain DOE78_19330 PF02834 LigT like Phosphoesterase DOE78_19335 PF00291 Pyridoxal-phosphate dependent enzyme DOE78_19340 PF01063 Amino-transferase class IV DOE78_19345 PF01546 Peptidase family M20/M25/M40 DOE78_19350 PF05975 Bacterial ABC transporter protein EcsB DOE78_19355 PF00005 ABC transporter DOE78_19365 PF08220 DeoR-like helix-turn-helix domain DOE78_19370 PF00849 RNA pseudouridylate synthase DOE78_19370 PF01479 S4 domain DOE78_19375 PF14667 Polysaccharide biosynthesis C-terminal domain DOE78_19375 PF01943 Polysaccharide biosynthesis protein DOE78_19385 PF10957 Sporulation protein Cse60 DOE78_19390 PF00581 Rhodanese-like domain DOE78_19395 PF08264 Anticodon-binding domain of tRNA DOE78_19395 PF00133 tRNA synthetases class I (I, L, M and V) DOE78_19395 PF13603 Leucyl-tRNA synthetase, Domain 2 DOE78_19395 PF09334 tRNA synthetases class I (M) DOE78_19410 PF00989 PAS fold DOE78_19410 PF00158 Sigma-54 interaction domain DOE78_19410 PF02954 Bacterial regulatory protein, Fis family DOE78_19420 PF07690 Major Facilitator Superfamily DOE78_19430 PF10732 Protein of unknown function (DUF2524) DOE78_19435 PF16199 Radical_SAM C-terminal domain DOE78_19435 PF04055 Radical SAM superfamily DOE78_19440 PF06962 Putative rRNA methylase DOE78_19445 PF10776 Protein of unknown function (DUF2600) DOE78_19450 PF12146 Serine aminopeptidase, S33 DOE78_19455 PF00132 Bacterial transferase hexapeptide (six repeats) DOE78_19460 PF13529 Peptidase_C39 like family DOE78_19465 PF13537 Glutamine amidotransferase domain DOE78_19465 PF00733 Asparagine synthase DOE78_19470 PF02773 S-adenosylmethionine synthetase, C-terminal domain DOE78_19470 PF00438 S-adenosylmethionine synthetase, N-terminal domain DOE78_19470 PF02772 S-adenosylmethionine synthetase, central domain DOE78_19475 PF01293 Phosphoenolpyruvate carboxykinase DOE78_19480 PF10763 Protein of unknown function (DUF2584) DOE78_19485 PF00326 Prolyl oligopeptidase family DOE78_19495 PF00005 ABC transporter DOE78_19500 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_19505 PF00293 NUDIX domain DOE78_19525 PF02743 Cache domain DOE78_19525 PF00672 HAMP domain DOE78_19525 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE78_19530 PF00210 Ferritin-like domain DOE78_19540 PF13091 PLD-like domain DOE78_19540 PF13396 Phospholipase_D-nuclease N-terminal DOE78_19545 PF02664 S-Ribosylhomocysteinase (LuxS) DOE78_19550 PF01809 Putative membrane protein insertion efficiency factor DOE78_19555 PF00484 Carbonic anhydrase DOE78_19565 PF01654 Cytochrome bd terminal oxidase subunit I DOE78_19570 PF02322 Cytochrome bd terminal oxidase subunit II DOE78_19575 PF13378 Enolase C-terminal domain-like DOE78_19575 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain DOE78_19580 PF13193 AMP-binding enzyme C-terminal domain DOE78_19580 PF00501 AMP-binding enzyme DOE78_19590 PF00916 Sulfate permease family DOE78_19590 PF01740 STAS domain DOE78_19595 PF00378 Enoyl-CoA hydratase/isomerase DOE78_19600 PF00561 alpha/beta hydrolase fold DOE78_19605 PF16582 Middle domain of thiamine pyrophosphate DOE78_19605 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain DOE78_19605 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain DOE78_19610 PF00425 chorismate binding enzyme DOE78_19615 PF01040 UbiA prenyltransferase family DOE78_19620 PF00343 Carbohydrate phosphorylase DOE78_19625 PF00534 Glycosyl transferases group 1 DOE78_19625 PF08323 Starch synthase catalytic domain DOE78_19630 PF00483 Nucleotidyl transferase DOE78_19635 PF00483 Nucleotidyl transferase DOE78_19640 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DOE78_19640 PF02806 Alpha amylase, C-terminal all-beta domain DOE78_19640 PF00128 Alpha amylase, catalytic domain DOE78_19770 PF02308 MgtC family DOE78_19775 PF01964 Radical SAM ThiC family DOE78_19775 PF13667 ThiC-associated domain DOE78_19795 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DOE78_19795 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DOE78_19805 PF01261 Xylose isomerase-like TIM barrel DOE78_19810 PF12833 Helix-turn-helix domain DOE78_19810 PF02311 AraC-like ligand binding domain DOE78_19820 PF00107 Zinc-binding dehydrogenase DOE78_19820 PF08240 Alcohol dehydrogenase GroES-like domain DOE78_19825 PF01261 Xylose isomerase-like TIM barrel DOE78_19830 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DOE78_19830 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DOE78_19835 PF02653 Branched-chain amino acid transport system / permease component DOE78_19840 PF00005 ABC transporter DOE78_19850 PF00356 Bacterial regulatory proteins, lacI family DOE78_19855 PF04397 LytTr DNA-binding domain DOE78_19855 PF00072 Response regulator receiver domain DOE78_19860 PF00072 Response regulator receiver domain DOE78_19860 PF09308 LuxQ, periplasmic DOE78_19860 PF00512 His Kinase A (phospho-acceptor) domain DOE78_19860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_19865 PF03741 Integral membrane protein TerC family DOE78_19875 PF00365 Phosphofructokinase DOE78_19880 PF08534 Redoxin DOE78_19885 PF08241 Methyltransferase domain DOE78_19890 PF00877 NlpC/P60 family DOE78_19910 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DOE78_19910 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DOE78_19920 PF08645 Polynucleotide kinase 3 phosphatase DOE78_19925 PF03618 Kinase/pyrophosphorylase DOE78_19930 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain DOE78_19930 PF02896 PEP-utilising enzyme, TIM barrel domain DOE78_19930 PF00391 PEP-utilising enzyme, mobile domain DOE78_19940 PF04198 Putative sugar-binding domain DOE78_19955 PF08240 Alcohol dehydrogenase GroES-like domain DOE78_19955 PF00107 Zinc-binding dehydrogenase DOE78_19965 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DOE78_19970 PF03611 PTS system sugar-specific permease component DOE78_19975 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DOE78_19975 PF02378 Phosphotransferase system, EIIC DOE78_19975 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DOE78_19980 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE78_19980 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain DOE78_19985 PF00364 Biotin-requiring enzyme DOE78_19985 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) DOE78_19985 PF02817 e3 binding domain DOE78_19990 PF00364 Biotin-requiring enzyme DOE78_19990 PF02779 Transketolase, pyrimidine binding domain DOE78_19990 PF02780 Transketolase, C-terminal domain DOE78_19995 PF00676 Dehydrogenase E1 component DOE78_20010 PF04198 Putative sugar-binding domain DOE78_20010 PF13936 Helix-turn-helix domain DOE78_20015 PF07663 Sorbitol phosphotransferase enzyme II C-terminus DOE78_20015 PF03612 Sorbitol phosphotransferase enzyme II N-terminus DOE78_20020 PF03608 PTS system enzyme II sorbitol-specific factor DOE78_20030 PF01740 STAS domain DOE78_20030 PF00916 Sulfate permease family DOE78_20035 PF08220 DeoR-like helix-turn-helix domain DOE78_20035 PF00455 DeoR C terminal sensor domain DOE78_20040 PF00294 pfkB family carbohydrate kinase DOE78_20045 PF02653 Branched-chain amino acid transport system / permease component DOE78_20050 PF00005 ABC transporter DOE78_20055 PF13407 Periplasmic binding protein domain DOE78_20060 PF01261 Xylose isomerase-like TIM barrel DOE78_20065 PF12833 Helix-turn-helix domain DOE78_20065 PF02311 AraC-like ligand binding domain DOE78_20070 PF04616 Glycosyl hydrolases family 43 DOE78_20075 PF00331 Glycosyl hydrolase family 10 DOE78_20085 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_20090 PF01547 Bacterial extracellular solute-binding protein DOE78_20095 PF00072 Response regulator receiver domain DOE78_20095 PF12833 Helix-turn-helix domain DOE78_20100 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_20100 PF00672 HAMP domain DOE78_20100 PF06580 Histidine kinase DOE78_20100 PF02743 Cache domain DOE78_20105 PF01263 Aldose 1-epimerase DOE78_20110 PF13472 GDSL-like Lipase/Acylhydrolase family DOE78_20115 PF01522 Polysaccharide deacetylase DOE78_20120 PF00370 FGGY family of carbohydrate kinases, N-terminal domain DOE78_20120 PF02782 FGGY family of carbohydrate kinases, C-terminal domain DOE78_20125 PF01261 Xylose isomerase-like TIM barrel DOE78_20130 PF03512 Glycosyl hydrolase family 52 DOE78_20135 PF00480 ROK family DOE78_20145 PF02082 Transcriptional regulator DOE78_20150 PF08125 Mannitol dehydrogenase C-terminal domain DOE78_20150 PF01232 Mannitol dehydrogenase Rossmann domain DOE78_20155 PF08279 HTH domain DOE78_20155 PF00874 PRD domain DOE78_20155 PF05043 Mga helix-turn-helix domain DOE78_20155 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DOE78_20155 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DOE78_20160 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 DOE78_20160 PF02378 Phosphotransferase system, EIIC DOE78_20160 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DOE78_20170 PF02525 Flavodoxin-like fold DOE78_20175 PF01638 HxlR-like helix-turn-helix DOE78_20180 PF12833 Helix-turn-helix domain DOE78_20200 PF00933 Glycosyl hydrolase family 3 N terminal domain DOE78_20205 PF13419 Haloacid dehalogenase-like hydrolase DOE78_20220 PF01229 Glycosyl hydrolases family 39 DOE78_20230 PF00294 pfkB family carbohydrate kinase DOE78_20235 PF01425 Amidase DOE78_20240 PF02785 Biotin carboxylase C-terminal domain DOE78_20240 PF00289 Biotin carboxylase, N-terminal domain DOE78_20240 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain DOE78_20245 PF09347 Domain of unknown function (DUF1989) DOE78_20255 PF00324 Amino acid permease DOE78_20265 PF01841 Transglutaminase-like superfamily DOE78_20265 PF08379 Bacterial transglutaminase-like N-terminal region DOE78_20270 PF00534 Glycosyl transferases group 1 DOE78_20270 PF13439 Glycosyltransferase Family 4 DOE78_20275 PF00111 2Fe-2S iron-sulfur cluster binding domain DOE78_20275 PF01799 [2Fe-2S] binding domain DOE78_20280 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase DOE78_20280 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DOE78_20285 PF00941 FAD binding domain in molybdopterin dehydrogenase DOE78_20290 PF12804 MobA-like NTP transferase domain DOE78_20295 PF02625 XdhC and CoxI family DOE78_20295 PF13478 XdhC Rossmann domain DOE78_20300 PF07690 Major Facilitator Superfamily DOE78_20305 PF01047 MarR family DOE78_20310 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE78_20315 PF00005 ABC transporter DOE78_20335 PF05504 Spore germination B3/ GerAC like, C-terminal DOE78_20345 PF03323 Bacillus/Clostridium GerA spore germination protein DOE78_20355 PF16736 Single Cache-like DOE78_20355 PF00989 PAS fold DOE78_20355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_20355 PF00512 His Kinase A (phospho-acceptor) domain DOE78_20360 PF00486 Transcriptional regulatory protein, C terminal DOE78_20360 PF00072 Response regulator receiver domain DOE78_20375 PF07690 Major Facilitator Superfamily DOE78_20385 PF00664 ABC transporter transmembrane region DOE78_20385 PF00005 ABC transporter DOE78_20445 PF00534 Glycosyl transferases group 1 DOE78_20445 PF13439 Glycosyltransferase Family 4 DOE78_20450 PF08323 Starch synthase catalytic domain DOE78_20450 PF00534 Glycosyl transferases group 1 DOE78_20455 PF01467 Cytidylyltransferase-like DOE78_20460 PF00535 Glycosyl transferase family 2 DOE78_20460 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase DOE78_20465 PF01501 Glycosyl transferase family 8 DOE78_20465 PF00535 Glycosyl transferase family 2 DOE78_20470 PF08671 Anti-repressor SinI DOE78_20470 PF01381 Helix-turn-helix DOE78_20475 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DOE78_20480 PF00132 Bacterial transferase hexapeptide (six repeats) DOE78_20480 PF17836 PglD N-terminal domain DOE78_20485 PF02397 Bacterial sugar transferase DOE78_20490 PF16363 GDP-mannose 4,6 dehydratase DOE78_20495 PF13439 Glycosyltransferase Family 4 DOE78_20495 PF00534 Glycosyl transferases group 1 DOE78_20500 PF00534 Glycosyl transferases group 1 DOE78_20500 PF13439 Glycosyltransferase Family 4 DOE78_20510 PF00535 Glycosyl transferase family 2 DOE78_20515 PF00534 Glycosyl transferases group 1 DOE78_20515 PF13439 Glycosyltransferase Family 4 DOE78_20520 PF00534 Glycosyl transferases group 1 DOE78_20520 PF13439 Glycosyltransferase Family 4 DOE78_20525 PF00483 Nucleotidyl transferase DOE78_20530 PF02719 Polysaccharide biosynthesis protein DOE78_20535 PF13614 AAA domain DOE78_20540 PF13807 G-rich domain on putative tyrosine kinase DOE78_20540 PF02706 Chain length determinant protein DOE78_20545 PF00664 ABC transporter transmembrane region DOE78_20545 PF00005 ABC transporter DOE78_20575 PF00733 Asparagine synthase DOE78_20575 PF13537 Glutamine amidotransferase domain DOE78_20580 PF00892 EamA-like transporter family DOE78_20590 PF06628 Catalase-related immune-responsive DOE78_20590 PF00199 Catalase DOE78_20600 PF07690 Major Facilitator Superfamily DOE78_20605 PF07690 Major Facilitator Superfamily DOE78_20610 PF18317 Shikimate 5'-dehydrogenase C-terminal domain DOE78_20610 PF08501 Shikimate dehydrogenase substrate binding domain DOE78_20615 PF01202 Shikimate kinase DOE78_20620 PF01022 Bacterial regulatory protein, arsR family DOE78_20625 PF16916 Dimerisation domain of Zinc Transporter DOE78_20625 PF01545 Cation efflux family DOE78_20630 PF03741 Integral membrane protein TerC family DOE78_20635 PF04794 YdjC-like protein DOE78_20640 PF02056 Family 4 glycosyl hydrolase DOE78_20640 PF11975 Family 4 glycosyl hydrolase C-terminal domain DOE78_20645 PF02378 Phosphotransferase system, EIIC DOE78_20650 PF07702 UTRA domain DOE78_20650 PF00392 Bacterial regulatory proteins, gntR family DOE78_20660 PF00156 Phosphoribosyl transferase domain DOE78_20665 PF00860 Permease family DOE78_20670 PF08713 DNA alkylation repair enzyme DOE78_20685 PF00873 AcrB/AcrD/AcrF family DOE78_20690 PF00440 Bacterial regulatory proteins, tetR family DOE78_20695 PF00149 Calcineurin-like phosphoesterase DOE78_20700 PF04264 YceI-like domain DOE78_20705 PF09339 IclR helix-turn-helix domain DOE78_20705 PF01614 Bacterial transcriptional regulator DOE78_20710 PF01274 Malate synthase DOE78_20715 PF03717 Penicillin-binding Protein dimerisation domain DOE78_20715 PF00905 Penicillin binding protein transpeptidase domain DOE78_20720 PF01258 Prokaryotic dksA/traR C4-type zinc finger DOE78_20725 PF17334 Minor curli fiber component A DOE78_20730 PF00082 Subtilase family DOE78_20735 PF07885 Ion channel DOE78_20735 PF02254 TrkA-N domain DOE78_20745 PF00342 Phosphoglucose isomerase DOE78_20750 PF00465 Iron-containing alcohol dehydrogenase DOE78_20755 PF04070 Domain of unknown function (DUF378) DOE78_20760 PF00202 Aminotransferase class-III DOE78_20765 PF00575 S1 RNA binding domain DOE78_20770 PF00209 Sodium:neurotransmitter symporter family DOE78_20780 PF02645 Uncharacterised protein, DegV family COG1307 DOE78_20785 PF00155 Aminotransferase class I and II DOE78_20790 PF01037 Lrp/AsnC ligand binding domain DOE78_20795 PF08386 TAP-like protein DOE78_20795 PF00561 alpha/beta hydrolase fold DOE78_20800 PF08958 Domain of unknown function (DUF1871) DOE78_20805 PF00155 Aminotransferase class I and II DOE78_20815 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD DOE78_20820 PF08810 Kinase associated protein B DOE78_20825 PF00929 Exonuclease DOE78_20830 PF00905 Penicillin binding protein transpeptidase domain DOE78_20830 PF00912 Transglycosylase DOE78_20840 PF17328 Family of unknown function (DUF5366) DOE78_20850 PF00361 Proton-conducting membrane transporter DOE78_20850 PF13244 Domain of unknown function (DUF4040) DOE78_20850 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DOE78_20855 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter DOE78_20860 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DOE78_20865 PF00361 Proton-conducting membrane transporter DOE78_20870 PF01899 Na+/H+ ion antiporter subunit DOE78_20875 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) DOE78_20880 PF03334 Na+/H+ antiporter subunit DOE78_20885 PF03061 Thioesterase superfamily DOE78_20890 PF09335 SNARE associated Golgi protein DOE78_20920 PF02673 Bacitracin resistance protein BacA DOE78_20925 PF09335 SNARE associated Golgi protein DOE78_20930 PF00174 Oxidoreductase molybdopterin binding domain DOE78_20935 PF13726 Na+-H+ antiporter family DOE78_20935 PF03553 Na+/H+ antiporter family DOE78_20940 PF02789 Cytosol aminopeptidase family, N-terminal domain DOE78_20940 PF00883 Cytosol aminopeptidase family, catalytic domain DOE78_20950 PF02681 Divergent PAP2 family DOE78_20955 PF06725 3D domain DOE78_20960 PF14068 Putative membrane protein DOE78_20965 PF00293 NUDIX domain DOE78_20965 PF13344 Haloacid dehalogenase-like hydrolase DOE78_20970 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE78_20975 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE78_20980 PF01521 Iron-sulphur cluster biosynthesis DOE78_20990 PF07293 Protein of unknown function (DUF1450) DOE78_20995 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE78_21000 PF00270 DEAD/DEAH box helicase DOE78_21000 PF09382 RQC domain DOE78_21000 PF16124 RecQ zinc-binding DOE78_21000 PF00271 Helicase conserved C-terminal domain DOE78_21000 PF00570 HRDC domain DOE78_21005 PF07315 Protein of unknown function (DUF1462) DOE78_21010 PF01106 NifU-like domain DOE78_21015 PF08544 GHMP kinases C terminal DOE78_21015 PF00288 GHMP kinases N terminal domain DOE78_21020 PF00291 Pyridoxal-phosphate dependent enzyme DOE78_21025 PF01842 ACT domain DOE78_21025 PF00742 Homoserine dehydrogenase DOE78_21025 PF03447 Homoserine dehydrogenase, NAD binding domain DOE78_21035 PF04608 Phosphatidylglycerophosphatase A DOE78_21040 PF13344 Haloacid dehalogenase-like hydrolase DOE78_21045 PF01934 Protein of unknown function DUF86 DOE78_21050 PF00563 EAL domain DOE78_21050 PF05231 MASE1 DOE78_21065 PF06265 Protein of unknown function (DUF1027) DOE78_21070 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) DOE78_21075 PF04055 Radical SAM superfamily DOE78_21075 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family DOE78_21080 PF01551 Peptidase family M23 DOE78_21090 PF00209 Sodium:neurotransmitter symporter family DOE78_21095 PF09560 Sporulation protein YunB (Spo_YunB) DOE78_21100 PF11871 Domain of unknown function (DUF3391) DOE78_21100 PF01966 HD domain DOE78_21105 PF08827 Domain of unknown function (DUF1805) DOE78_21110 PF02872 5'-nucleotidase, C-terminal domain DOE78_21115 PF01904 Protein of unknown function DUF72 DOE78_21120 PF01458 Uncharacterized protein family (UPF0051) DOE78_21125 PF01592 NifU-like N terminal domain DOE78_21130 PF00266 Aminotransferase class-V DOE78_21135 PF01458 Uncharacterized protein family (UPF0051) DOE78_21140 PF00005 ABC transporter DOE78_21145 PF02627 Carboxymuconolactone decarboxylase family DOE78_21150 PF03180 NLPA lipoprotein DOE78_21155 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_21160 PF09383 NIL domain DOE78_21160 PF00005 ABC transporter DOE78_21165 PF01053 Cys/Met metabolism PLP-dependent enzyme DOE78_21175 PF00085 Thioredoxin DOE78_21180 PF01751 Toprim domain DOE78_21185 PF10830 Protein of unknown function (DUF2553) DOE78_21190 PF01597 Glycine cleavage H-protein DOE78_21195 PF03960 ArsC family DOE78_21200 PF02770 Acyl-CoA dehydrogenase, middle domain DOE78_21200 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DOE78_21200 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DOE78_21205 PF02803 Thiolase, C-terminal domain DOE78_21205 PF00108 Thiolase, N-terminal domain DOE78_21210 PF00378 Enoyl-CoA hydratase/isomerase DOE78_21210 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DOE78_21210 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DOE78_21215 PF14115 YuzL-like protein DOE78_21220 PF01619 Proline dehydrogenase DOE78_21225 PF10835 Protein of unknown function (DUF2573) DOE78_21235 PF00005 ABC transporter DOE78_21240 PF01032 FecCD transport family DOE78_21245 PF01032 FecCD transport family DOE78_21250 PF01497 Periplasmic binding protein DOE78_21255 PF01098 Cell cycle protein DOE78_21260 PF07454 Stage II sporulation protein P (SpoIIP) DOE78_21270 PF00106 short chain dehydrogenase DOE78_21290 PF03176 MMPL family DOE78_21295 PF01047 MarR family DOE78_21300 PF01487 Type I 3-dehydroquinase DOE78_21305 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases DOE78_21310 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain DOE78_21310 PF07685 CobB/CobQ-like glutamine amidotransferase domain DOE78_21315 PF00300 Histidine phosphatase superfamily (branch 1) DOE78_21335 PF02283 Cobinamide kinase / cobinamide phosphate guanyltransferase DOE78_21340 PF00155 Aminotransferase class I and II DOE78_21345 PF03186 CobD/Cbib protein DOE78_21350 PF00920 Dehydratase family DOE78_21355 PF09383 NIL domain DOE78_21355 PF00005 ABC transporter DOE78_21360 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_21365 PF03180 NLPA lipoprotein DOE78_21370 PF00465 Iron-containing alcohol dehydrogenase DOE78_21375 PF03060 Nitronate monooxygenase DOE78_21380 PF00403 Heavy-metal-associated domain DOE78_21385 PF00403 Heavy-metal-associated domain DOE78_21400 PF01022 Bacterial regulatory protein, arsR family DOE78_21410 PF00248 Aldo/keto reductase family DOE78_21415 PF00465 Iron-containing alcohol dehydrogenase DOE78_21420 PF00480 ROK family DOE78_21425 PF00356 Bacterial regulatory proteins, lacI family DOE78_21430 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_21435 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_21440 PF13416 Bacterial extracellular solute-binding protein DOE78_21445 PF03424 Carbohydrate binding domain (family 17/28) DOE78_21445 PF00150 Cellulase (glycosyl hydrolase family 5) DOE78_21450 PF07690 Major Facilitator Superfamily DOE78_21455 PF00232 Glycosyl hydrolase family 1 DOE78_21460 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DOE78_21460 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DOE78_21465 PF00232 Glycosyl hydrolase family 1 DOE78_21470 PF00392 Bacterial regulatory proteins, gntR family DOE78_21470 PF07702 UTRA domain DOE78_21475 PF07690 Major Facilitator Superfamily DOE78_21480 PF00367 phosphotransferase system, EIIB DOE78_21480 PF02378 Phosphotransferase system, EIIC DOE78_21485 PF13580 SIS domain DOE78_21495 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase DOE78_21500 PF01979 Amidohydrolase family DOE78_21505 PF00072 Response regulator receiver domain DOE78_21505 PF04397 LytTr DNA-binding domain DOE78_21510 PF09308 LuxQ, periplasmic DOE78_21510 PF00512 His Kinase A (phospho-acceptor) domain DOE78_21510 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_21510 PF00072 Response regulator receiver domain DOE78_21515 PF00072 Response regulator receiver domain DOE78_21535 PF11975 Family 4 glycosyl hydrolase C-terminal domain DOE78_21535 PF02056 Family 4 glycosyl hydrolase DOE78_21540 PF01380 SIS domain DOE78_21540 PF00571 CBS domain DOE78_21550 PF00194 Eukaryotic-type carbonic anhydrase DOE78_21575 PF01545 Cation efflux family DOE78_21575 PF16916 Dimerisation domain of Zinc Transporter DOE78_21600 PF00248 Aldo/keto reductase family DOE78_21610 PF00171 Aldehyde dehydrogenase family DOE78_21615 PF00202 Aminotransferase class-III DOE78_21620 PF00202 Aminotransferase class-III DOE78_21630 PF02954 Bacterial regulatory protein, Fis family DOE78_21630 PF00158 Sigma-54 interaction domain DOE78_21630 PF00989 PAS fold DOE78_21645 PF00990 Diguanylate cyclase, GGDEF domain DOE78_21645 PF00563 EAL domain DOE78_21645 PF03707 Bacterial signalling protein N terminal repeat DOE78_21665 PF01569 PAP2 superfamily DOE78_21690 PF07883 Cupin domain DOE78_21695 PF00581 Rhodanese-like domain DOE78_21700 PF07875 Coat F domain DOE78_21715 PF07875 Coat F domain DOE78_21720 PF08240 Alcohol dehydrogenase GroES-like domain DOE78_21720 PF00107 Zinc-binding dehydrogenase DOE78_21720 PF13823 Alcohol dehydrogenase GroES-associated DOE78_21725 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_21730 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_21745 PF00356 Bacterial regulatory proteins, lacI family DOE78_21750 PF00251 Glycosyl hydrolases family 32 N-terminal domain DOE78_21750 PF08244 Glycosyl hydrolases family 32 C terminal DOE78_21755 PF00294 pfkB family carbohydrate kinase DOE78_21760 PF08244 Glycosyl hydrolases family 32 C terminal DOE78_21760 PF00251 Glycosyl hydrolases family 32 N-terminal domain DOE78_21770 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_21775 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_21785 PF12833 Helix-turn-helix domain DOE78_21785 PF00072 Response regulator receiver domain DOE78_21790 PF06580 Histidine kinase DOE78_21790 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_21790 PF07694 5TMR of 5TMR-LYT DOE78_21820 PF00356 Bacterial regulatory proteins, lacI family DOE78_21840 PF04542 Sigma-70 region 2 DOE78_21840 PF08281 Sigma-70, region 4 DOE78_21845 PF02653 Branched-chain amino acid transport system / permease component DOE78_21850 PF00005 ABC transporter DOE78_21860 PF00313 'Cold-shock' DNA-binding domain DOE78_21875 PF08818 Domain of unknown function (DU1801) DOE78_21885 PF08486 Stage II sporulation protein DOE78_21885 PF04122 Putative cell wall binding repeat 2 DOE78_22040 PF01668 SmpB protein DOE78_22045 PF00575 S1 RNA binding domain DOE78_22045 PF00773 RNB domain DOE78_22045 PF08206 Ribonuclease B OB domain DOE78_22045 PF17876 Cold shock domain DOE78_22050 PF12146 Serine aminopeptidase, S33 DOE78_22055 PF03840 Preprotein translocase SecG subunit DOE78_22070 PF00113 Enolase, C-terminal TIM barrel domain DOE78_22070 PF03952 Enolase, N-terminal domain DOE78_22075 PF01676 Metalloenzyme superfamily DOE78_22075 PF06415 BPG-independent PGAM N-terminus (iPGM_N) DOE78_22080 PF00121 Triosephosphate isomerase DOE78_22085 PF00162 Phosphoglycerate kinase DOE78_22090 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain DOE78_22090 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DOE78_22095 PF04198 Putative sugar-binding domain DOE78_22105 PF04552 Sigma-54, DNA binding domain DOE78_22105 PF00309 Sigma-54 factor, Activator interacting domain (AID) DOE78_22105 PF04963 Sigma-54 factor, core binding domain DOE78_22120 PF00574 Clp protease DOE78_22125 PF00381 PTS HPr component phosphorylation site DOE78_22130 PF14527 WhiA LAGLIDADG-like domain DOE78_22130 PF10298 WhiA N-terminal LAGLIDADG-like domain DOE78_22130 PF02650 WhiA C-terminal HTH domain DOE78_22135 PF01933 Uncharacterised protein family UPF0052 DOE78_22140 PF03668 P-loop ATPase protein family DOE78_22145 PF00293 NUDIX domain DOE78_22150 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE78_22160 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase DOE78_22160 PF01502 Phosphoribosyl-AMP cyclohydrolase DOE78_22165 PF00977 Histidine biosynthesis protein DOE78_22170 PF00977 Histidine biosynthesis protein DOE78_22175 PF00117 Glutamine amidotransferase class-I DOE78_22180 PF00475 Imidazoleglycerol-phosphate dehydratase DOE78_22185 PF00815 Histidinol dehydrogenase DOE78_22190 PF01634 ATP phosphoribosyltransferase DOE78_22195 PF13393 Histidyl-tRNA synthetase DOE78_22200 PF14602 Hexapeptide repeat of succinyl-transferase DOE78_22205 PF13419 Haloacid dehalogenase-like hydrolase DOE78_22210 PF07670 Nucleoside recognition DOE78_22215 PF01790 Prolipoprotein diacylglyceryl transferase DOE78_22220 PF02603 HPr Serine kinase N terminus DOE78_22220 PF07475 HPr Serine kinase C-terminal domain DOE78_22225 PF00245 Alkaline phosphatase DOE78_22230 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV DOE78_22235 PF13349 Putative adhesin DOE78_22245 PF00005 ABC transporter DOE78_22245 PF17755 UvrA DNA-binding domain DOE78_22245 PF17760 UvrA interaction domain DOE78_22250 PF02151 UvrB/uvrC motif DOE78_22250 PF00271 Helicase conserved C-terminal domain DOE78_22250 PF12344 Ultra-violet resistance protein B DOE78_22250 PF04851 Type III restriction enzyme, res subunit DOE78_22250 PF17757 UvrB interaction domain DOE78_22265 PF03707 Bacterial signalling protein N terminal repeat DOE78_22265 PF00563 EAL domain DOE78_22265 PF00990 Diguanylate cyclase, GGDEF domain DOE78_22270 PF07681 DoxX DOE78_22275 PF01047 MarR family DOE78_22280 PF00582 Universal stress protein family DOE78_22285 PF03773 Predicted permease DOE78_22295 PF00874 PRD domain DOE78_22295 PF03123 CAT RNA binding domain DOE78_22300 PF00232 Glycosyl hydrolase family 1 DOE78_22305 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 DOE78_22305 PF00367 phosphotransferase system, EIIB DOE78_22305 PF02378 Phosphotransferase system, EIIC DOE78_22310 PF00232 Glycosyl hydrolase family 1 DOE78_22315 PF02673 Bacitracin resistance protein BacA DOE78_22320 PF00571 CBS domain DOE78_22320 PF01595 Cyclin M transmembrane N-terminal domain DOE78_22320 PF03471 Transporter associated domain DOE78_22325 PF13411 MerR HTH family regulatory protein DOE78_22335 PF04973 Nicotinamide mononucleotide transporter DOE78_22340 PF00293 NUDIX domain DOE78_22345 PF00857 Isochorismatase family DOE78_22355 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DOE78_22360 PF01638 HxlR-like helix-turn-helix DOE78_22375 PF02374 Anion-transporting ATPase DOE78_22380 PF06953 Arsenical resistance operon trans-acting repressor ArsD DOE78_22385 PF01451 Low molecular weight phosphotyrosine protein phosphatase DOE78_22390 PF02040 Arsenical pump membrane protein DOE78_22395 PF01022 Bacterial regulatory protein, arsR family DOE78_22400 PF01022 Bacterial regulatory protein, arsR family DOE78_22405 PF00440 Bacterial regulatory proteins, tetR family DOE78_22410 PF07690 Major Facilitator Superfamily DOE78_22415 PF07690 Major Facilitator Superfamily DOE78_22420 PF01717 Cobalamin-independent synthase, Catalytic domain DOE78_22425 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family DOE78_22425 PF03466 LysR substrate binding domain DOE78_22435 PF04226 Transglycosylase associated protein DOE78_22450 PF12833 Helix-turn-helix domain DOE78_22450 PF02805 Metal binding domain of Ada DOE78_22470 PF00535 Glycosyl transferase family 2 DOE78_22485 PF01370 NAD dependent epimerase/dehydratase family DOE78_22495 PF16875 Glycosyl hydrolase family 36 N-terminal domain DOE78_22495 PF16874 Glycosyl hydrolase family 36 C-terminal domain DOE78_22500 PF07690 Major Facilitator Superfamily DOE78_22515 PF00375 Sodium:dicarboxylate symporter family DOE78_22520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_22520 PF17203 Single cache domain 3 DOE78_22520 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain DOE78_22520 PF00989 PAS fold DOE78_22525 PF00072 Response regulator receiver domain DOE78_22530 PF03949 Malic enzyme, NAD binding domain DOE78_22530 PF00390 Malic enzyme, N-terminal domain DOE78_22535 PF00269 Small, acid-soluble spore proteins, alpha/beta type DOE78_22545 PF00672 HAMP domain DOE78_22545 PF02743 Cache domain DOE78_22545 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE78_22555 PF02780 Transketolase, C-terminal domain DOE78_22555 PF02779 Transketolase, pyrimidine binding domain DOE78_22555 PF00456 Transketolase, thiamine diphosphate binding domain DOE78_22560 PF02502 Ribose/Galactose Isomerase DOE78_22565 PF00834 Ribulose-phosphate 3 epimerase family DOE78_22570 PF08240 Alcohol dehydrogenase GroES-like domain DOE78_22570 PF00107 Zinc-binding dehydrogenase DOE78_22580 PF00107 Zinc-binding dehydrogenase DOE78_22580 PF08240 Alcohol dehydrogenase GroES-like domain DOE78_22585 PF03611 PTS system sugar-specific permease component DOE78_22590 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DOE78_22605 PF17820 PDZ domain DOE78_22610 PF01471 Putative peptidoglycan binding domain DOE78_22610 PF17820 PDZ domain DOE78_22610 PF03572 Peptidase family S41 DOE78_22615 PF08447 PAS fold DOE78_22615 PF13426 PAS domain DOE78_22615 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE78_22620 PF11871 Domain of unknown function (DUF3391) DOE78_22620 PF01966 HD domain DOE78_22625 PF12146 Serine aminopeptidase, S33 DOE78_22630 PF08244 Glycosyl hydrolases family 32 C terminal DOE78_22630 PF00251 Glycosyl hydrolases family 32 N-terminal domain DOE78_22635 PF00251 Glycosyl hydrolases family 32 N-terminal domain DOE78_22635 PF08244 Glycosyl hydrolases family 32 C terminal DOE78_22640 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_22645 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_22655 PF00356 Bacterial regulatory proteins, lacI family DOE78_22660 PF00722 Glycosyl hydrolases family 16 DOE78_22675 PF00722 Glycosyl hydrolases family 16 DOE78_22680 PF00072 Response regulator receiver domain DOE78_22680 PF12833 Helix-turn-helix domain DOE78_22685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_22685 PF06580 Histidine kinase DOE78_22695 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_22700 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_22705 PF01551 Peptidase family M23 DOE78_22710 PF02687 FtsX-like permease family DOE78_22710 PF18075 FtsX extracellular domain DOE78_22715 PF00005 ABC transporter DOE78_22725 PF13442 Cytochrome C oxidase, cbb3-type, subunit III DOE78_22730 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 DOE78_22730 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) DOE78_22740 PF02028 BCCT, betaine/carnitine/choline family transporter DOE78_22750 PF07516 SecA Wing and Scaffold domain DOE78_22750 PF07517 SecA DEAD-like domain DOE78_22750 PF01043 SecA preprotein cross-linking domain DOE78_22750 PF02810 SEC-C motif DOE78_22755 PF02810 SEC-C motif DOE78_22755 PF05225 helix-turn-helix, Psq domain DOE78_22760 PF13407 Periplasmic binding protein domain DOE78_22765 PF02653 Branched-chain amino acid transport system / permease component DOE78_22770 PF00005 ABC transporter DOE78_22775 PF05025 RbsD / FucU transport protein family DOE78_22780 PF00294 pfkB family carbohydrate kinase DOE78_22785 PF00356 Bacterial regulatory proteins, lacI family DOE78_22800 PF02417 Chromate transporter DOE78_22805 PF02417 Chromate transporter DOE78_22810 PF02608 ABC transporter substrate-binding protein PnrA-like DOE78_22815 PF00672 HAMP domain DOE78_22815 PF02743 Cache domain DOE78_22815 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE78_22820 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DOE78_22820 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DOE78_22825 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus DOE78_22825 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein DOE78_22835 PF09479 Listeria-Bacteroides repeat domain (List_Bact_rpt) DOE78_22835 PF12733 Cadherin-like beta sandwich domain DOE78_22875 PF02561 Flagellar protein FliS DOE78_22880 PF07196 Flagellin hook IN motif DOE78_22880 PF07195 Flagellar hook-associated protein 2 C-terminus DOE78_22880 PF07196 Flagellin hook IN motif DOE78_22880 PF07195 Flagellar hook-associated protein 2 C-terminus DOE78_22880 PF02465 Flagellar hook-associated protein 2 N-terminus DOE78_22880 PF02465 Flagellar hook-associated protein 2 N-terminus DOE78_22885 PF03646 FlaG protein DOE78_22895 PF00669 Bacterial flagellin N-terminal helical region DOE78_22895 PF00700 Bacterial flagellin C-terminal helical region DOE78_22900 PF02599 Global regulator protein family DOE78_22905 PF02623 FliW protein DOE78_22915 PF00700 Bacterial flagellin C-terminal helical region DOE78_22915 PF00669 Bacterial flagellin N-terminal helical region DOE78_22920 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DOE78_22920 PF00460 Flagella basal body rod protein DOE78_22950 PF00271 Helicase conserved C-terminal domain DOE78_22950 PF04851 Type III restriction enzyme, res subunit DOE78_22955 PF02645 Uncharacterised protein, DegV family COG1307 DOE78_22965 PF00072 Response regulator receiver domain DOE78_22965 PF00196 Bacterial regulatory proteins, luxR family DOE78_22970 PF07730 Histidine kinase DOE78_22970 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_22970 PF05384 Sensor protein DegS DOE78_22975 PF09186 Domain of unknown function (DUF1949) DOE78_22975 PF01205 Uncharacterized protein family UPF0029 DOE78_22980 PF03816 Cell envelope-related transcriptional attenuator domain DOE78_22990 PF04932 O-Antigen ligase DOE78_22995 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DOE78_23005 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DOE78_23005 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DOE78_23005 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DOE78_23020 PF13439 Glycosyltransferase Family 4 DOE78_23020 PF00534 Glycosyl transferases group 1 DOE78_23025 PF04122 Putative cell wall binding repeat 2 DOE78_23025 PF01520 N-acetylmuramoyl-L-alanine amidase DOE78_23030 PF08486 Stage II sporulation protein DOE78_23030 PF04122 Putative cell wall binding repeat 2 DOE78_23035 PF04122 Putative cell wall binding repeat 2 DOE78_23035 PF01520 N-acetylmuramoyl-L-alanine amidase DOE78_23045 PF02397 Bacterial sugar transferase DOE78_23050 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family DOE78_23065 PF02719 Polysaccharide biosynthesis protein DOE78_23075 PF03816 Cell envelope-related transcriptional attenuator domain DOE78_23080 PF03023 Lipid II flippase MurJ DOE78_23100 PF00483 Nucleotidyl transferase DOE78_23100 PF01050 Mannose-6-phosphate isomerase DOE78_23105 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain DOE78_23105 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III DOE78_23105 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II DOE78_23105 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I DOE78_23110 PF16363 GDP-mannose 4,6 dehydratase DOE78_23115 PF01370 NAD dependent epimerase/dehydratase family DOE78_23120 PF02397 Bacterial sugar transferase DOE78_23125 PF00082 Subtilase family DOE78_23130 PF16363 GDP-mannose 4,6 dehydratase DOE78_23145 PF01520 N-acetylmuramoyl-L-alanine amidase DOE78_23145 PF11741 AMIN domain DOE78_23150 PF01520 N-acetylmuramoyl-L-alanine amidase DOE78_23150 PF04122 Putative cell wall binding repeat 2 DOE78_23155 PF01209 ubiE/COQ5 methyltransferase family DOE78_23165 PF01238 Phosphomannose isomerase type I DOE78_23190 PF00665 Integrase core domain DOE78_23195 PF01695 IstB-like ATP binding protein DOE78_23210 PF04101 Glycosyltransferase family 28 C-terminal domain DOE78_23210 PF03033 Glycosyltransferase family 28 N-terminal domain DOE78_23215 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DOE78_23215 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DOE78_23215 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DOE78_23230 PF00862 Sucrose synthase DOE78_23230 PF00534 Glycosyl transferases group 1 DOE78_23235 PF03808 Glycosyl transferase WecB/TagA/CpsF family DOE78_23240 PF00534 Glycosyl transferases group 1 DOE78_23245 PF13439 Glycosyltransferase Family 4 DOE78_23245 PF00534 Glycosyl transferases group 1 DOE78_23255 PF00535 Glycosyl transferase family 2 DOE78_23265 PF00132 Bacterial transferase hexapeptide (six repeats) DOE78_23285 PF02397 Bacterial sugar transferase DOE78_23290 PF00483 Nucleotidyl transferase DOE78_23300 PF13614 AAA domain DOE78_23305 PF02706 Chain length determinant protein DOE78_23305 PF13807 G-rich domain on putative tyrosine kinase DOE78_23315 PF00877 NlpC/P60 family DOE78_23315 PF01476 LysM domain DOE78_23320 PF00072 Response regulator receiver domain DOE78_23330 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily DOE78_23335 PF00905 Penicillin binding protein transpeptidase domain DOE78_23335 PF05223 NTF2-like N-terminal transpeptidase domain DOE78_23335 PF03717 Penicillin-binding Protein dimerisation domain DOE78_23340 PF05036 Sporulation related domain DOE78_23340 PF01520 N-acetylmuramoyl-L-alanine amidase DOE78_23360 PF05816 Toxic anion resistance protein (TelA) DOE78_23365 PF10112 5-bromo-4-chloroindolyl phosphate hydrolysis protein DOE78_23370 PF01520 N-acetylmuramoyl-L-alanine amidase DOE78_23370 PF05036 Sporulation related domain DOE78_23380 PF11724 YvbH-like oligomerisation region DOE78_23380 PF08000 Bacterial PH domain DOE78_23390 PF09000 Cytotoxic DOE78_23390 PF11570 Coiled-coil receptor-binding R-domain of colicin E2 DOE78_23390 PF03515 Colicin-like bacteriocin tRNase domain DOE78_23395 PF00082 Subtilase family DOE78_23400 PF04203 Sortase domain DOE78_23405 PF00480 ROK family DOE78_23410 PF03714 Bacterial pullanase-associated domain DOE78_23410 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) DOE78_23410 PF00128 Alpha amylase, catalytic domain DOE78_23415 PF02378 Phosphotransferase system, EIIC DOE78_23425 PF16657 Maltogenic Amylase, C-terminal domain DOE78_23425 PF00128 Alpha amylase, catalytic domain DOE78_23435 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DOE78_23435 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DOE78_23440 PF02894 Oxidoreductase family, C-terminal alpha/beta domain DOE78_23440 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DOE78_23450 PF12833 Helix-turn-helix domain DOE78_23450 PF00072 Response regulator receiver domain DOE78_23455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_23455 PF06580 Histidine kinase DOE78_23455 PF02743 Cache domain DOE78_23455 PF00672 HAMP domain DOE78_23460 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_23465 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_23475 PF04434 SWIM zinc finger DOE78_23480 PF00176 SNF2 family N-terminal domain DOE78_23480 PF00271 Helicase conserved C-terminal domain DOE78_23480 PF12419 SNF2 Helicase protein DOE78_23485 PF03816 Cell envelope-related transcriptional attenuator domain DOE78_23490 PF04172 LrgB-like family DOE78_23495 PF03788 LrgA family DOE78_23500 PF00436 Single-strand binding protein family DOE78_23510 PF14183 YwpF-like protein DOE78_23515 PF00457 Glycosyl hydrolases family 11 DOE78_23515 PF01522 Polysaccharide deacetylase DOE78_23515 PF03422 Carbohydrate binding module (family 6) DOE78_23520 PF07977 FabA-like domain DOE78_23530 PF00460 Flagella basal body rod protein DOE78_23530 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DOE78_23535 PF00460 Flagella basal body rod protein DOE78_23535 PF06429 Flagellar basal body rod FlgEFG protein C-terminal DOE78_23545 PF12116 Stage III sporulation protein D DOE78_23550 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase DOE78_23550 PF01476 LysM domain DOE78_23565 PF00474 Sodium:solute symporter family DOE78_23580 PF01470 Pyroglutamyl peptidase DOE78_23590 PF01551 Peptidase family M23 DOE78_23600 PF08486 Stage II sporulation protein DOE78_23605 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DOE78_23610 PF08680 TATA-box binding DOE78_23620 PF00361 Proton-conducting membrane transporter DOE78_23625 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus DOE78_23625 PF00361 Proton-conducting membrane transporter DOE78_23630 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus DOE78_23630 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus DOE78_23630 PF00361 Proton-conducting membrane transporter DOE78_23635 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L DOE78_23640 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 DOE78_23650 PF00146 NADH dehydrogenase DOE78_23660 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit DOE78_23665 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit DOE78_23670 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 DOE78_23675 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain DOE78_23675 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain DOE78_23680 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DOE78_23680 PF02874 ATP synthase alpha/beta family, beta-barrel domain DOE78_23685 PF00231 ATP synthase DOE78_23690 PF00306 ATP synthase alpha/beta chain, C terminal domain DOE78_23690 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DOE78_23690 PF02874 ATP synthase alpha/beta family, beta-barrel domain DOE78_23695 PF00213 ATP synthase delta (OSCP) subunit DOE78_23700 PF00430 ATP synthase B/B' CF(0) DOE78_23705 PF00137 ATP synthase subunit C DOE78_23710 PF00119 ATP synthase A chain DOE78_23715 PF03899 ATP synthase I chain DOE78_23725 PF13860 FlgD Ig-like domain DOE78_23725 PF00082 Subtilase family DOE78_23725 PF02225 PA domain DOE78_23725 PF05922 Peptidase inhibitor I9 DOE78_23740 PF00464 Serine hydroxymethyltransferase DOE78_23745 PF04260 Protein of unknown function (DUF436) DOE78_23750 PF02502 Ribose/Galactose Isomerase DOE78_23755 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain DOE78_23755 PF02743 Cache domain DOE78_23755 PF00672 HAMP domain DOE78_23760 PF01451 Low molecular weight phosphotyrosine protein phosphatase DOE78_23765 PF02659 Putative manganese efflux pump DOE78_23770 PF01300 Telomere recombination DOE78_23770 PF03481 Putative GTP-binding controlling metal-binding DOE78_23780 PF09551 Stage II sporulation protein R (spore_II_R) DOE78_23785 PF13847 Methyltransferase domain DOE78_23785 PF17827 PrmC N-terminal domain DOE78_23790 PF00472 RF-1 domain DOE78_23790 PF03462 PCRF domain DOE78_23800 PF00265 Thymidine kinase DOE78_23805 PF01197 Ribosomal protein L31 DOE78_23810 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain DOE78_23810 PF07497 Rho termination factor, RNA-binding domain DOE78_23810 PF07498 Rho termination factor, N-terminal domain DOE78_23815 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) DOE78_23820 PF00923 Transaldolase/Fructose-6-phosphate aldolase DOE78_23825 PF01116 Fructose-bisphosphate aldolase class-II DOE78_23830 PF00072 Response regulator receiver domain DOE78_23835 PF10740 Domain of unknown function (DUF2529) DOE78_23840 PF06418 CTP synthase N-terminus DOE78_23840 PF00117 Glutamine amidotransferase class-I DOE78_23845 PF05066 HB1, ASXL, restriction endonuclease HTH domain DOE78_23850 PF02310 B12 binding domain DOE78_23850 PF01642 Methylmalonyl-CoA mutase DOE78_23860 PF02770 Acyl-CoA dehydrogenase, middle domain DOE78_23860 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DOE78_23860 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DOE78_23865 PF00441 Acyl-CoA dehydrogenase, C-terminal domain DOE78_23865 PF02770 Acyl-CoA dehydrogenase, middle domain DOE78_23865 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DOE78_23870 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain DOE78_23870 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain DOE78_23875 PF02803 Thiolase, C-terminal domain DOE78_23875 PF00108 Thiolase, N-terminal domain DOE78_23880 PF02754 Cysteine-rich domain DOE78_23880 PF13183 4Fe-4S dicluster domain DOE78_23885 PF13091 PLD-like domain DOE78_23890 PF03851 UV-endonuclease UvdE DOE78_23905 PF03485 Arginyl tRNA synthetase N terminal domain DOE78_23905 PF00750 tRNA synthetases class I (R) DOE78_23905 PF05746 DALR anticodon binding domain DOE78_23915 PF00491 Arginase family DOE78_23925 PF00912 Transglycosylase DOE78_23925 PF00905 Penicillin binding protein transpeptidase domain DOE78_23930 PF08741 YwhD family DOE78_23935 PF02163 Peptidase family M50 DOE78_23940 PF01361 Tautomerase enzyme DOE78_23950 PF01966 HD domain DOE78_23955 PF07293 Protein of unknown function (DUF1450) DOE78_23965 PF03099 Biotin/lipoate A/B protein ligase family DOE78_23970 PF01515 Phosphate acetyl/butaryl transferase DOE78_23980 PF07486 Cell Wall Hydrolase DOE78_23985 PF09671 Spore coat protein (Spore_GerQ) DOE78_23990 PF04241 Protein of unknown function (DUF423) DOE78_24005 PF03167 Uracil DNA glycosylase superfamily DOE78_24015 PF00899 ThiF family DOE78_24020 PF02597 ThiS family DOE78_24025 PF02391 MoaE protein DOE78_24030 PF12804 MobA-like NTP transferase domain DOE78_24035 PF08543 Phosphomethylpyrimidine kinase DOE78_24040 PF00885 6,7-dimethyl-8-ribityllumazine synthase DOE78_24045 PF00925 GTP cyclohydrolase II DOE78_24045 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase DOE78_24050 PF00677 Lumazine binding domain DOE78_24055 PF08830 Protein of unknown function (DUF1806) DOE78_24060 PF02585 GlcNAc-PI de-N-acetylase DOE78_24070 PF00005 ABC transporter DOE78_24080 PF00440 Bacterial regulatory proteins, tetR family DOE78_24105 PF04073 Aminoacyl-tRNA editing domain DOE78_24110 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DOE78_24110 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DOE78_24110 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DOE78_24115 PF00128 Alpha amylase, catalytic domain DOE78_24115 PF16657 Maltogenic Amylase, C-terminal domain DOE78_24120 PF07992 Pyridine nucleotide-disulphide oxidoreductase DOE78_24125 PF00005 ABC transporter DOE78_24125 PF00664 ABC transporter transmembrane region DOE78_24130 PF00005 ABC transporter DOE78_24130 PF00664 ABC transporter transmembrane region DOE78_24135 PF13411 MerR HTH family regulatory protein DOE78_24150 PF01546 Peptidase family M20/M25/M40 DOE78_24160 PF02770 Acyl-CoA dehydrogenase, middle domain DOE78_24160 PF02771 Acyl-CoA dehydrogenase, N-terminal domain DOE78_24160 PF08028 Acyl-CoA dehydrogenase, C-terminal domain DOE78_24170 PF00849 RNA pseudouridylate synthase DOE78_24170 PF01479 S4 domain DOE78_24175 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain DOE78_24175 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain DOE78_24175 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain DOE78_24180 PF00483 Nucleotidyl transferase DOE78_24190 PF13439 Glycosyltransferase Family 4 DOE78_24190 PF00534 Glycosyl transferases group 1 DOE78_24195 PF05360 yiaA/B two helix domain DOE78_24205 PF00528 Binding-protein-dependent transport system inner membrane component DOE78_24210 PF00005 ABC transporter DOE78_24210 PF00571 CBS domain DOE78_24220 PF07694 5TMR of 5TMR-LYT DOE78_24220 PF13492 GAF domain DOE78_24220 PF06580 Histidine kinase DOE78_24220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_24225 PF00072 Response regulator receiver domain DOE78_24225 PF04397 LytTr DNA-binding domain DOE78_24230 PF02554 Carbon starvation protein CstA DOE78_24235 PF00482 Type II secretion system (T2SS), protein F DOE78_24240 PF00437 Type II/IV secretion system protein DOE78_24245 PF00437 Type II/IV secretion system protein DOE78_24280 PF01478 Type IV leader peptidase family DOE78_24280 PF06750 Bacterial Peptidase A24 N-terminal domain DOE78_24285 PF08334 Type II secretion system (T2SS), protein G DOE78_24285 PF07963 Prokaryotic N-terminal methylation motif DOE78_24295 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region DOE78_24300 PF13382 Adenine deaminase C-terminal domain DOE78_24300 PF01979 Amidohydrolase family DOE78_24310 PF00072 Response regulator receiver domain DOE78_24310 PF00486 Transcriptional regulatory protein, C terminal DOE78_24315 PF00512 His Kinase A (phospho-acceptor) domain DOE78_24315 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_24320 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit DOE78_24325 PF02378 Phosphotransferase system, EIIC DOE78_24330 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit DOE78_24345 PF00082 Subtilase family DOE78_24345 PF13860 FlgD Ig-like domain DOE78_24345 PF05922 Peptidase inhibitor I9 DOE78_24345 PF02225 PA domain DOE78_24355 PF00392 Bacterial regulatory proteins, gntR family DOE78_24355 PF07702 UTRA domain DOE78_24360 PF00294 pfkB family carbohydrate kinase DOE78_24365 PF01380 SIS domain DOE78_24370 PF13520 Amino acid permease DOE78_24375 PF01261 Xylose isomerase-like TIM barrel DOE78_24380 PF01408 Oxidoreductase family, NAD-binding Rossmann fold DOE78_24395 PF07702 UTRA domain DOE78_24395 PF00392 Bacterial regulatory proteins, gntR family DOE78_24400 PF00128 Alpha amylase, catalytic domain DOE78_24400 PF16657 Maltogenic Amylase, C-terminal domain DOE78_24405 PF02378 Phosphotransferase system, EIIC DOE78_24405 PF00367 phosphotransferase system, EIIB DOE78_24410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_24410 PF00512 His Kinase A (phospho-acceptor) domain DOE78_24410 PF00989 PAS fold DOE78_24410 PF08447 PAS fold DOE78_24415 PF00171 Aldehyde dehydrogenase family DOE78_24420 PF01472 PUA domain DOE78_24420 PF00696 Amino acid kinase family DOE78_24425 PF00149 Calcineurin-like phosphoesterase DOE78_24425 PF02872 5'-nucleotidase, C-terminal domain DOE78_24430 PF14748 Pyrroline-5-carboxylate reductase dimerisation DOE78_24430 PF03807 NADP oxidoreductase coenzyme F420-dependent DOE78_24435 PF00696 Amino acid kinase family DOE78_24435 PF01472 PUA domain DOE78_24440 PF00171 Aldehyde dehydrogenase family DOE78_24445 PF12679 ABC-2 family transporter protein DOE78_24450 PF00005 ABC transporter DOE78_24455 PF00072 Response regulator receiver domain DOE78_24455 PF04397 LytTr DNA-binding domain DOE78_24485 PF00732 GMC oxidoreductase DOE78_24485 PF05199 GMC oxidoreductase DOE78_24500 PF01979 Amidohydrolase family DOE78_24505 PF03606 C4-dicarboxylate anaerobic carrier DOE78_24510 PF00158 Sigma-54 interaction domain DOE78_24510 PF13426 PAS domain DOE78_24510 PF02954 Bacterial regulatory protein, Fis family DOE78_24515 PF00300 Histidine phosphatase superfamily (branch 1) DOE78_24525 PF01842 ACT domain DOE78_24525 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain DOE78_24525 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain DOE78_24540 PF06445 GyrI-like small molecule binding domain DOE78_24540 PF12833 Helix-turn-helix domain DOE78_24545 PF02590 Predicted SPOUT methyltransferase DOE78_24555 PF13180 PDZ domain DOE78_24560 PF00753 Metallo-beta-lactamase superfamily DOE78_24565 PF09648 YycH protein DOE78_24570 PF07435 YycH protein DOE78_24575 PF13426 PAS domain DOE78_24575 PF00672 HAMP domain DOE78_24575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase DOE78_24575 PF00512 His Kinase A (phospho-acceptor) domain DOE78_24580 PF00072 Response regulator receiver domain DOE78_24580 PF00486 Transcriptional regulatory protein, C terminal DOE78_24585 PF01551 Peptidase family M23 DOE78_24585 PF01476 LysM domain DOE78_24600 PF00709 Adenylosuccinate synthetase DOE78_24605 PF00772 DnaB-like helicase N terminal domain DOE78_24605 PF03796 DnaB-like helicase C terminal domain DOE78_24610 PF01281 Ribosomal protein L9, N-terminal domain DOE78_24610 PF03948 Ribosomal protein L9, C-terminal domain DOE78_24615 PF02272 DHHA1 domain DOE78_24615 PF01368 DHH family DOE78_24620 PF09991 Predicted membrane protein (DUF2232) DOE78_24625 PF01084 Ribosomal protein S18 DOE78_24630 PF00436 Single-strand binding protein family DOE78_24635 PF01250 Ribosomal protein S6 DOE78_24640 PF00534 Glycosyl transferases group 1 DOE78_24640 PF13439 Glycosyltransferase Family 4 DOE78_24645 PF01569 PAP2 superfamily DOE78_24650 PF06071 Protein of unknown function (DUF933) DOE78_24650 PF01926 50S ribosome-binding GTPase DOE78_24655 PF04879 Molybdopterin oxidoreductase Fe4S4 domain DOE78_24655 PF00384 Molybdopterin oxidoreductase DOE78_24655 PF01568 Molydopterin dinucleotide binding domain DOE78_24660 PF06107 Bacterial protein of unknown function (DUF951) DOE78_24665 PF00924 Mechanosensitive ion channel DOE78_24670 PF06866 Protein of unknown function (DUF1256) DOE78_24680 PF17762 HTH domain found in ParB protein DOE78_24680 PF02195 ParB-like nuclease domain DOE78_24685 PF13614 AAA domain DOE78_24695 PF02195 ParB-like nuclease domain DOE78_24695 PF17762 HTH domain found in ParB protein DOE78_24700 PF02527 rRNA small subunit methyltransferase G DOE78_24705 PF01134 Glucose inhibited division protein A DOE78_24705 PF13932 GidA associated domain DOE78_24710 PF12631 MnmE helical domain DOE78_24710 PF01926 50S ribosome-binding GTPase DOE78_24710 PF10396 GTP-binding protein TrmE N-terminus DOE78_24715 PF01424 R3H domain DOE78_24715 PF14804 Jag N-terminus DOE78_24720 PF02096 60Kd inner membrane protein DOE78_24725 PF00825 Ribonuclease P DOE78_24730 PF00468 Ribosomal protein L34