DOE78_00010 SM00480 DNA polymerase III beta subunit DOE78_00030 SM00387 Histidine kinase-like ATPases DOE78_00030 SM00433 TopoisomeraseII DOE78_00035 SM00434 DNA Topoisomerase IV DOE78_00075 SM00116 Domain in cystathionine beta-synthase and other proteins. DOE78_00075 SM01240 DOE78_00075 DOE78_00080 SM00936 Penicillin-binding protein 5, C-terminal domain DOE78_00115 SM00257 Lysin motif DOE78_00115 SM00636 DOE78_00115 DOE78_00135 SM00382 ATPases associated with a variety of cellular activities DOE78_00145 SM00493 DOE78_00145 DOE78_00235 SM00966 SpoVT / AbrB like domain DOE78_00250 SM01208 DOE78_00250 DOE78_00255 SM00493 DOE78_00255 DOE78_00260 SM00650 Ribosomal RNA adenine dimethylases DOE78_00310 SM01400 DOE78_00310 DOE78_00330 SM00487 DEAD-like helicases superfamily DOE78_00330 SM00490 helicase superfamily c-terminal domain DOE78_00330 SM00982 DOE78_00330 DOE78_00330 SM01058 CarD-like/TRCF domain DOE78_00335 SM00966 SpoVT / AbrB like domain DOE78_00350 SM00363 S4 RNA-binding domain DOE78_00370 SM00316 Ribosomal protein S1-like RNA-binding domain DOE78_00380 SM00331 Sigma factor PP2C-like phosphatases DOE78_00380 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain DOE78_00390 SM00220 Serine/Threonine protein kinases, catalytic domain DOE78_00395 SM00977 TilS substrate C-terminal domain DOE78_00405 SM00382 ATPases associated with a variety of cellular activities DOE78_00450 SM00905 Dihydroneopterin aldolase DOE78_00460 SM00530 Helix-turn-helix XRE-family like proteins DOE78_00565 SM00382 ATPases associated with a variety of cellular activities DOE78_00565 SM01086 C-terminal, D2-small domain, of ClpB protein DOE78_00570 SM00382 ATPases associated with a variety of cellular activities DOE78_00575 SM00670 Large family of predicted nucleotide-binding domains DOE78_00600 SM00840 DOE78_00600 DOE78_00605 SM00535 Ribonuclease III family DOE78_00610 SM00967 RNA 2'-O ribose methyltransferase substrate binding DOE78_00620 SM00421 helix_turn_helix, Lux Regulon DOE78_00635 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. DOE78_00635 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. DOE78_00640 SM00649 Ribosomal protein L11/L12 DOE78_00670 SM00663 RNA polymerase I subunit A N-terminus DOE78_00690 SM00838 Elongation factor G C-terminus DOE78_00690 SM00889 Elongation factor G, domain IV DOE78_00720 SM01403 DOE78_00720 DOE78_00740 SM01382 DOE78_00740 DOE78_00740 SM01383 DOE78_00740 DOE78_00755 SM00322 K homology RNA-binding domain DOE78_00775 SM01374 DOE78_00775 DOE78_00780 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. DOE78_00840 SM00316 Ribosomal protein S1-like RNA-binding domain DOE78_00860 SM00662 RNA polymerases D DOE78_00870 SM00382 ATPases associated with a variety of cellular activities DOE78_00875 SM00382 ATPases associated with a variety of cellular activities DOE78_00900 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) DOE78_00900 SM00091 PAS domain DOE78_00900 SM00387 Histidine kinase-like ATPases DOE78_00900 SM00388 His Kinase A (phosphoacceptor) domain DOE78_00910 SM00646 DOE78_00910 DOE78_00925 SM01251 DOE78_00925 DOE78_01040 SM00450 Rhodanese Homology Domain DOE78_01045 SM00450 Rhodanese Homology Domain DOE78_01045 SM00849 Metallo-beta-lactamase superfamily DOE78_01065 SM00450 Rhodanese Homology Domain DOE78_01070 SM00450 Rhodanese Homology Domain DOE78_01075 SM00450 Rhodanese Homology Domain DOE78_01080 SM00450 Rhodanese Homology Domain DOE78_01080 SM00849 Metallo-beta-lactamase superfamily DOE78_01215 SM00116 Domain in cystathionine beta-synthase and other proteins. DOE78_01215 SM00924 MgtE intracellular N domain DOE78_01230 SM01207 DOE78_01230 DOE78_01245 SM00382 ATPases associated with a variety of cellular activities DOE78_01255 SM00855 Phosphoglycerate mutase family DOE78_01295 SM00487 DEAD-like helicases superfamily DOE78_01295 SM00490 helicase superfamily c-terminal domain DOE78_01330 SM01005 Alanine racemase, C-terminal domain DOE78_01355 SM00387 Histidine kinase-like ATPases DOE78_01360 SM00331 Sigma factor PP2C-like phosphatases DOE78_01380 SM00331 Sigma factor PP2C-like phosphatases DOE78_01385 SM00316 Ribosomal protein S1-like RNA-binding domain DOE78_01385 SM00732 Likely ribonuclease with RNase H fold. DOE78_01395 SM00731 SprT homologues. DOE78_01500 SM00382 ATPases associated with a variety of cellular activities DOE78_01510 SM00881 CoA binding domain DOE78_01525 SM00883 Chaperonin 10 Kd subunit DOE78_01535 SM00448 cheY-homologous receiver domain DOE78_01540 SM00387 Histidine kinase-like ATPases DOE78_01555 SM00870 DOE78_01555 DOE78_01610 SM00530 Helix-turn-helix XRE-family like proteins DOE78_01630 SM00382 ATPases associated with a variety of cellular activities DOE78_01635 SM00382 ATPases associated with a variety of cellular activities DOE78_01645 SM00327 von Willebrand factor (vWF) type A domain DOE78_01665 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DOE78_01670 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DOE78_01670 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DOE78_01680 SM00327 von Willebrand factor (vWF) type A domain DOE78_01775 SM00460 Transglutaminase/protease-like homologues DOE78_01790 SM01061 CAT RNA binding domain DOE78_01825 SM01001 AIR carboxylase DOE78_01835 SM00998 Adenylosuccinate lyase C-terminus DOE78_01850 SM01211 DOE78_01850 DOE78_01875 SM00798 AICARFT/IMPCHase bienzyme DOE78_01875 SM00851 MGS-like domain DOE78_01880 SM01209 DOE78_01880 DOE78_01880 SM01210 DOE78_01880 DOE78_01915 SM00278 Helix-hairpin-helix DNA-binding motif class 1 DOE78_01915 SM00292 breast cancer carboxy-terminal domain DOE78_01915 SM00532 Ligase N family DOE78_01935 SM00098 Alkaline phosphatase homologues DOE78_01970 SM00845 GatB domain DOE78_01995 SM00046 Diacylglycerol kinase catalytic domain (presumed) DOE78_02090 SM01130 DOE78_02090 DOE78_02125 SM00244 prohibitin homologues DOE78_02130 SM00062 Bacterial periplasmic substrate-binding proteins DOE78_02140 SM00382 ATPases associated with a variety of cellular activities DOE78_02205 SM00422 helix_turn_helix, mercury resistance DOE78_02220 SM00347 helix_turn_helix multiple antibiotic resistance protein DOE78_02255 SM00344 helix_turn_helix ASNC type DOE78_02275 SM00155 Phospholipase D. Active site motifs. DOE78_02280 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DOE78_02425 SM01061 CAT RNA binding domain DOE78_02490 SM01007 Class II Aldolase and Adducin N-terminal domain DOE78_02515 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DOE78_02515 SM00387 Histidine kinase-like ATPases DOE78_02520 SM00342 helix_turn_helix, arabinose operon control protein DOE78_02520 SM00448 cheY-homologous receiver domain DOE78_02525 SM00382 ATPases associated with a variety of cellular activities DOE78_02550 SM00342 helix_turn_helix, arabinose operon control protein DOE78_02565 SM00387 Histidine kinase-like ATPases DOE78_02570 SM00342 helix_turn_helix, arabinose operon control protein DOE78_02570 SM00448 cheY-homologous receiver domain DOE78_02635 SM00342 helix_turn_helix, arabinose operon control protein DOE78_02650 SM00420 helix_turn_helix, Deoxyribose operon repressor DOE78_02650 SM01134 DOE78_02650 DOE78_02655 SM00448 cheY-homologous receiver domain DOE78_02655 SM00862 Transcriptional regulatory protein, C terminal DOE78_02660 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DOE78_02660 SM00387 Histidine kinase-like ATPases DOE78_02660 SM00388 His Kinase A (phosphoacceptor) domain DOE78_02675 SM00382 ATPases associated with a variety of cellular activities DOE78_02725 SM00342 helix_turn_helix, arabinose operon control protein DOE78_02735 SM00829 Enoylreductase DOE78_02740 SM00422 helix_turn_helix, mercury resistance DOE78_02745 SM00387 Histidine kinase-like ATPases DOE78_02750 SM00342 helix_turn_helix, arabinose operon control protein DOE78_02750 SM00448 cheY-homologous receiver domain DOE78_02775 SM00642 Alpha-amylase domain DOE78_02785 SM00382 ATPases associated with a variety of cellular activities DOE78_02790 SM00387 Histidine kinase-like ATPases DOE78_02795 SM00448 cheY-homologous receiver domain DOE78_02795 SM00862 Transcriptional regulatory protein, C terminal DOE78_02800 SM00267 diguanylate cyclase DOE78_02810 SM00487 DEAD-like helicases superfamily DOE78_02810 SM00490 helicase superfamily c-terminal domain DOE78_02850 SM00448 cheY-homologous receiver domain DOE78_02850 SM00862 Transcriptional regulatory protein, C terminal DOE78_02855 SM00387 Histidine kinase-like ATPases DOE78_02855 SM00388 His Kinase A (phosphoacceptor) domain DOE78_02860 SM00382 ATPases associated with a variety of cellular activities DOE78_02885 SM00387 Histidine kinase-like ATPases DOE78_02890 SM00421 helix_turn_helix, Lux Regulon DOE78_02890 SM00448 cheY-homologous receiver domain DOE78_02895 SM00382 ATPases associated with a variety of cellular activities DOE78_02925 SM00988 UreE urease accessory protein, N-terminal domain DOE78_02955 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) DOE78_02955 SM00091 PAS domain DOE78_02955 SM00387 Histidine kinase-like ATPases DOE78_02955 SM00388 His Kinase A (phosphoacceptor) domain DOE78_03000 SM00345 helix_turn_helix gluconate operon transcriptional repressor DOE78_03005 SM00382 ATPases associated with a variety of cellular activities DOE78_03090 SM00382 ATPases associated with a variety of cellular activities DOE78_03100 SM00062 Bacterial periplasmic substrate-binding proteins DOE78_03100 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. DOE78_03105 SM00345 helix_turn_helix gluconate operon transcriptional repressor DOE78_03105 SM00895 DOE78_03105 DOE78_03120 SM00062 Bacterial periplasmic substrate-binding proteins DOE78_03120 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. DOE78_03130 SM00382 ATPases associated with a variety of cellular activities DOE78_03175 SM00487 DEAD-like helicases superfamily DOE78_03175 SM00490 helicase superfamily c-terminal domain DOE78_03205 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain DOE78_03205 SM01232 DOE78_03205 DOE78_03210 SM00257 Lysin motif DOE78_03230 SM00387 Histidine kinase-like ATPases DOE78_03235 SM00421 helix_turn_helix, Lux Regulon DOE78_03235 SM00448 cheY-homologous receiver domain DOE78_03240 SM00382 ATPases associated with a variety of cellular activities DOE78_03255 SM00357 Cold shock protein domain DOE78_03285 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DOE78_03285 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DOE78_03305 SM00382 ATPases associated with a variety of cellular activities DOE78_03315 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DOE78_03315 SM00387 Histidine kinase-like ATPases DOE78_03315 SM00388 His Kinase A (phosphoacceptor) domain DOE78_03320 SM00448 cheY-homologous receiver domain DOE78_03320 SM00862 Transcriptional regulatory protein, C terminal DOE78_03335 SM00382 ATPases associated with a variety of cellular activities DOE78_03375 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain DOE78_03375 SM00437 Bacterial DNA topoisomerase I DNA-binding domain DOE78_03375 SM00493 DOE78_03375 DOE78_03425 SM00530 Helix-turn-helix XRE-family like proteins DOE78_03440 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DOE78_03450 SM00226 Low molecular weight phosphatase family DOE78_03570 SM00478 endonuclease III DOE78_03615 SM00342 helix_turn_helix, arabinose operon control protein DOE78_03615 SM00448 cheY-homologous receiver domain DOE78_03625 SM00822 DOE78_03625 DOE78_03635 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family DOE78_03650 SM00829 Enoylreductase DOE78_03675 SM00382 ATPases associated with a variety of cellular activities DOE78_03710 SM00382 ATPases associated with a variety of cellular activities DOE78_03735 SM00448 cheY-homologous receiver domain DOE78_03735 SM00862 Transcriptional regulatory protein, C terminal DOE78_03740 SM00387 Histidine kinase-like ATPases DOE78_03740 SM00388 His Kinase A (phosphoacceptor) domain DOE78_03750 SM00387 Histidine kinase-like ATPases DOE78_03750 SM00388 His Kinase A (phosphoacceptor) domain DOE78_03755 SM00448 cheY-homologous receiver domain DOE78_03755 SM00862 Transcriptional regulatory protein, C terminal DOE78_03790 SM01400 DOE78_03790 DOE78_03815 SM00267 diguanylate cyclase DOE78_03830 SM01350 DOE78_03830 DOE78_03845 SM00345 helix_turn_helix gluconate operon transcriptional repressor DOE78_03845 SM00895 DOE78_03845 DOE78_03880 SM00387 Histidine kinase-like ATPases DOE78_03880 SM00911 HWE histidine kinase DOE78_03885 SM00448 cheY-homologous receiver domain DOE78_03885 SM01012 DOE78_03885 DOE78_03945 SM00487 DEAD-like helicases superfamily DOE78_03945 SM00490 helicase superfamily c-terminal domain DOE78_03950 SM00631 DOE78_03950 DOE78_03980 SM00354 helix_turn _helix lactose operon repressor DOE78_04000 SM00342 helix_turn_helix, arabinose operon control protein DOE78_04000 SM00871 Bacterial transcription activator, effector binding domain DOE78_04075 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DOE78_04100 SM00347 helix_turn_helix multiple antibiotic resistance protein DOE78_04115 SM00387 Histidine kinase-like ATPases DOE78_04125 SM00342 helix_turn_helix, arabinose operon control protein DOE78_04130 SM00478 endonuclease III DOE78_04165 SM00382 ATPases associated with a variety of cellular activities DOE78_04180 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DOE78_04180 SM00387 Histidine kinase-like ATPases DOE78_04185 SM00342 helix_turn_helix, arabinose operon control protein DOE78_04185 SM00448 cheY-homologous receiver domain DOE78_04215 SM00849 Metallo-beta-lactamase superfamily DOE78_04230 SM00100 Cyclic nucleotide-monophosphate binding domain DOE78_04230 SM00419 helix_turn_helix, cAMP Regulatory protein DOE78_04240 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DOE78_04270 SM01126 DOE78_04270 DOE78_04300 SM00342 helix_turn_helix, arabinose operon control protein DOE78_04310 SM00345 helix_turn_helix gluconate operon transcriptional repressor DOE78_04350 SM01007 Class II Aldolase and Adducin N-terminal domain DOE78_04360 SM00861 Transketolase, pyrimidine binding domain DOE78_04365 SM00813 Alpha-L-arabinofuranosidase C-terminus DOE78_04375 SM00813 Alpha-L-arabinofuranosidase C-terminus DOE78_04405 SM00257 Lysin motif DOE78_04415 SM00257 Lysin motif DOE78_04445 SM00342 helix_turn_helix, arabinose operon control protein DOE78_04460 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DOE78_04500 SM00257 Lysin motif DOE78_04515 SM00479 DOE78_04515 DOE78_04550 SM00382 ATPases associated with a variety of cellular activities DOE78_04605 SM00052 Putative diguanylate phosphodiesterase DOE78_04605 SM00091 PAS domain DOE78_04605 SM00267 diguanylate cyclase DOE78_04615 SM00382 ATPases associated with a variety of cellular activities DOE78_04655 SM00062 Bacterial periplasmic substrate-binding proteins DOE78_04655 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. DOE78_04665 SM00382 ATPases associated with a variety of cellular activities DOE78_04675 SM00822 DOE78_04675 DOE78_04695 SM00346 helix_turn_helix isocitrate lyase regulation DOE78_04745 SM00382 ATPases associated with a variety of cellular activities DOE78_04755 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain DOE78_04760 SM00387 Histidine kinase-like ATPases DOE78_04760 SM00388 His Kinase A (phosphoacceptor) domain DOE78_04810 SM00729 Elongator protein 3, MiaB family, Radical SAM DOE78_04810 SM00876 Biotin and Thiamin Synthesis associated domain DOE78_04835 SM00062 Bacterial periplasmic substrate-binding proteins DOE78_04845 SM00382 ATPases associated with a variety of cellular activities DOE78_04895 SM00357 Cold shock protein domain DOE78_04900 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DOE78_04900 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DOE78_04905 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain DOE78_04910 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins DOE78_04985 SM00345 helix_turn_helix gluconate operon transcriptional repressor DOE78_04985 SM00866 DOE78_04985 DOE78_05000 SM00926 Molybdopterin oxidoreductase Fe4S4 domain DOE78_05035 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain DOE78_05065 SM00382 ATPases associated with a variety of cellular activities DOE78_05070 SM00382 ATPases associated with a variety of cellular activities DOE78_05075 SM00909 Sporulation and spore germination DOE78_05080 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DOE78_05080 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DOE78_05150 SM00478 endonuclease III DOE78_05150 SM00525 DOE78_05150 DOE78_05180 SM00382 ATPases associated with a variety of cellular activities DOE78_05185 SM00382 ATPases associated with a variety of cellular activities DOE78_05190 SM00382 ATPases associated with a variety of cellular activities DOE78_05225 SM00382 ATPases associated with a variety of cellular activities DOE78_05365 SM00387 Histidine kinase-like ATPases DOE78_05365 SM00388 His Kinase A (phosphoacceptor) domain DOE78_05390 SM00873 B3/4 domain DOE78_05395 SM00567 E-Z type HEAT repeats DOE78_05415 SM00763 PrkA AAA domain DOE78_05435 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) DOE78_05435 SM00091 PAS domain DOE78_05435 SM00267 diguanylate cyclase DOE78_05435 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DOE78_05465 SM00421 helix_turn_helix, Lux Regulon DOE78_05485 SM00267 diguanylate cyclase DOE78_05485 SM00448 cheY-homologous receiver domain DOE78_05505 SM00448 cheY-homologous receiver domain DOE78_05510 SM00091 PAS domain DOE78_05510 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DOE78_05510 SM00387 Histidine kinase-like ATPases DOE78_05510 SM00388 His Kinase A (phosphoacceptor) domain DOE78_05510 SM00448 cheY-homologous receiver domain DOE78_05555 SM00631 DOE78_05555 DOE78_05680 SM00448 cheY-homologous receiver domain DOE78_05680 SM00862 Transcriptional regulatory protein, C terminal DOE78_05685 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DOE78_05685 SM00387 Histidine kinase-like ATPases DOE78_05685 SM00388 His Kinase A (phosphoacceptor) domain DOE78_05690 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DOE78_05710 SM00116 Domain in cystathionine beta-synthase and other proteins. DOE78_05710 SM01091 Transporter associated domain DOE78_05715 SM00422 helix_turn_helix, mercury resistance DOE78_05720 SM00387 Histidine kinase-like ATPases DOE78_05720 SM00388 His Kinase A (phosphoacceptor) domain DOE78_05725 SM00899 DOE78_05725 DOE78_05740 SM00530 Helix-turn-helix XRE-family like proteins DOE78_05755 SM00382 ATPases associated with a variety of cellular activities DOE78_05760 SM00382 ATPases associated with a variety of cellular activities DOE78_05775 SM00382 ATPases associated with a variety of cellular activities DOE78_05825 SM00729 Elongator protein 3, MiaB family, Radical SAM DOE78_05840 SM00382 ATPases associated with a variety of cellular activities DOE78_05860 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DOE78_05900 SM00347 helix_turn_helix multiple antibiotic resistance protein DOE78_05930 SM00382 ATPases associated with a variety of cellular activities DOE78_06010 SM00387 Histidine kinase-like ATPases DOE78_06015 SM00421 helix_turn_helix, Lux Regulon DOE78_06015 SM00448 cheY-homologous receiver domain DOE78_06055 SM00849 Metallo-beta-lactamase superfamily DOE78_06100 SM00382 ATPases associated with a variety of cellular activities DOE78_06120 SM00914 DOE78_06120 DOE78_06145 SM00822 DOE78_06145 DOE78_06155 SM00420 helix_turn_helix, Deoxyribose operon repressor DOE78_06155 SM01134 DOE78_06155 DOE78_06260 SM00642 Alpha-amylase domain DOE78_06280 SM00642 Alpha-amylase domain DOE78_06285 SM00354 helix_turn _helix lactose operon repressor DOE78_06325 SM00530 Helix-turn-helix XRE-family like proteins DOE78_06370 SM00345 helix_turn_helix gluconate operon transcriptional repressor DOE78_06370 SM00895 DOE78_06370 DOE78_06430 SM00100 Cyclic nucleotide-monophosphate binding domain DOE78_06430 SM00419 helix_turn_helix, cAMP Regulatory protein DOE78_06435 SM00729 Elongator protein 3, MiaB family, Radical SAM DOE78_06445 SM00852 Probable molybdopterin binding domain DOE78_06460 SM00100 Cyclic nucleotide-monophosphate binding domain DOE78_06460 SM00419 helix_turn_helix, cAMP Regulatory protein DOE78_06465 SM00859 Semialdehyde dehydrogenase, NAD binding domain DOE78_06485 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain DOE78_06490 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DOE78_06505 SM00382 ATPases associated with a variety of cellular activities DOE78_06505 SM01086 C-terminal, D2-small domain, of ClpB protein DOE78_06545 SM00825 Beta-ketoacyl synthase DOE78_06555 SM00382 ATPases associated with a variety of cellular activities DOE78_06560 SM00382 ATPases associated with a variety of cellular activities DOE78_06615 SM00382 ATPases associated with a variety of cellular activities DOE78_06620 SM00382 ATPases associated with a variety of cellular activities DOE78_06645 SM00155 Phospholipase D. Active site motifs. DOE78_06675 SM01118 DOE78_06675 DOE78_06685 SM00954 Region found in RelA / SpoT proteins DOE78_06705 SM00116 Domain in cystathionine beta-synthase and other proteins. DOE78_06705 SM00924 MgtE intracellular N domain DOE78_06720 SM00052 Putative diguanylate phosphodiesterase DOE78_06810 SM00530 Helix-turn-helix XRE-family like proteins DOE78_06855 SM00479 DOE78_06855 DOE78_06910 SM00382 ATPases associated with a variety of cellular activities DOE78_06935 SM00052 Putative diguanylate phosphodiesterase DOE78_06975 SM00729 Elongator protein 3, MiaB family, Radical SAM DOE78_06995 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DOE78_06995 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DOE78_07000 SM00091 PAS domain DOE78_07000 SM00387 Histidine kinase-like ATPases DOE78_07000 SM00388 His Kinase A (phosphoacceptor) domain DOE78_07035 SM01007 Class II Aldolase and Adducin N-terminal domain DOE78_07060 SM00893 Electron transfer flavoprotein domain DOE78_07065 SM00893 Electron transfer flavoprotein domain DOE78_07105 SM00387 Histidine kinase-like ATPases DOE78_07105 SM00388 His Kinase A (phosphoacceptor) domain DOE78_07110 SM00347 helix_turn_helix multiple antibiotic resistance protein DOE78_07120 SM00382 ATPases associated with a variety of cellular activities DOE78_07120 SM01086 C-terminal, D2-small domain, of ClpB protein DOE78_07200 SM00260 Two component signalling adaptor domain DOE78_07200 SM00448 cheY-homologous receiver domain DOE78_07220 SM00052 Putative diguanylate phosphodiesterase DOE78_07220 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) DOE78_07220 SM00091 PAS domain DOE78_07220 SM00267 diguanylate cyclase DOE78_07240 SM00052 Putative diguanylate phosphodiesterase DOE78_07260 SM00849 Metallo-beta-lactamase superfamily DOE78_07300 SM00382 ATPases associated with a variety of cellular activities DOE78_07305 SM00382 ATPases associated with a variety of cellular activities DOE78_07315 SM00849 Metallo-beta-lactamase superfamily DOE78_07340 SM00861 Transketolase, pyrimidine binding domain DOE78_07415 SM00838 Elongation factor G C-terminus DOE78_07445 SM00670 Large family of predicted nucleotide-binding domains DOE78_07465 SM00878 Biotin carboxylase C-terminal domain DOE78_07530 SM00116 Domain in cystathionine beta-synthase and other proteins. DOE78_07640 SM00878 Biotin carboxylase C-terminal domain DOE78_07690 SM00740 DOE78_07690 DOE78_07695 SM00740 DOE78_07695 DOE78_07750 SM00842 Cell division protein FtsA DOE78_07755 SM00864 Tubulin/FtsZ family, GTPase domain DOE78_07755 SM00865 Tubulin/FtsZ family, C-terminal domain DOE78_07800 SM00363 S4 RNA-binding domain DOE78_07825 SM00363 S4 RNA-binding domain DOE78_07850 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain DOE78_07855 SM00851 MGS-like domain DOE78_07855 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain DOE78_07870 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family DOE78_07885 SM00831 Cation transporter/ATPase, N-terminus DOE78_07900 SM00072 Guanylate kinase homologues. DOE78_07905 SM01409 DOE78_07905 DOE78_07915 SM00487 DEAD-like helicases superfamily DOE78_07915 SM00490 helicase superfamily c-terminal domain DOE78_07940 SM00331 Sigma factor PP2C-like phosphatases DOE78_07940 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain DOE78_07945 SM00220 Serine/Threonine protein kinases, catalytic domain DOE78_07945 SM00740 DOE78_07945 DOE78_07960 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain DOE78_07980 SM01120 DOE78_07980 DOE78_07980 SM01121 DOE78_07980 DOE78_07995 SM00487 DEAD-like helicases superfamily DOE78_07995 SM00490 helicase superfamily c-terminal domain DOE78_08010 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. DOE78_08015 SM00822 DOE78_08015 DOE78_08025 SM00358 Double-stranded RNA binding motif DOE78_08025 SM00535 Ribonuclease III family DOE78_08030 SM00968 SMC proteins Flexible Hinge Domain DOE78_08035 SM00382 ATPases associated with a variety of cellular activities DOE78_08035 SM00962 SRP54-type protein, GTPase domain DOE78_08035 SM00963 SRP54-type protein, helical bundle domain DOE78_08045 SM00382 ATPases associated with a variety of cellular activities DOE78_08045 SM00962 SRP54-type protein, GTPase domain DOE78_08045 SM00963 SRP54-type protein, helical bundle domain DOE78_08110 SM00881 CoA binding domain DOE78_08120 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain DOE78_08120 SM00437 Bacterial DNA topoisomerase I DNA-binding domain DOE78_08120 SM00493 DOE78_08120 DOE78_08140 SM00382 ATPases associated with a variety of cellular activities DOE78_08140 SM01086 C-terminal, D2-small domain, of ClpB protein DOE78_08180 SM00382 ATPases associated with a variety of cellular activities DOE78_08235 SM00448 cheY-homologous receiver domain DOE78_08270 SM00382 ATPases associated with a variety of cellular activities DOE78_08270 SM00962 SRP54-type protein, GTPase domain DOE78_08280 SM00448 cheY-homologous receiver domain DOE78_08285 SM00073 Histidine Phosphotransfer domain DOE78_08285 SM00260 Two component signalling adaptor domain DOE78_08285 SM00387 Histidine kinase-like ATPases DOE78_08285 SM01231 DOE78_08285 DOE78_08290 SM00260 Two component signalling adaptor domain DOE78_08355 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DOE78_08365 SM00479 DOE78_08365 DOE78_08365 SM00481 DNA polymerase alpha chain like domain DOE78_08375 SM00316 Ribosomal protein S1-like RNA-binding domain DOE78_08375 SM00322 K homology RNA-binding domain DOE78_08410 SM00904 Riboflavin kinase DOE78_08415 SM01387 DOE78_08415 DOE78_08420 SM00316 Ribosomal protein S1-like RNA-binding domain DOE78_08420 SM00322 K homology RNA-binding domain DOE78_08450 SM00859 Semialdehyde dehydrogenase, NAD binding domain DOE78_08460 SM01130 DOE78_08460 DOE78_08465 SM00849 Metallo-beta-lactamase superfamily DOE78_08480 SM00382 ATPases associated with a variety of cellular activities DOE78_08480 SM00843 DOE78_08480 DOE78_08485 SM00345 helix_turn_helix gluconate operon transcriptional repressor DOE78_08485 SM00866 DOE78_08485 DOE78_08495 SM00382 ATPases associated with a variety of cellular activities DOE78_08510 SM00267 diguanylate cyclase DOE78_08550 SM00852 Probable molybdopterin binding domain DOE78_08555 SM00382 ATPases associated with a variety of cellular activities DOE78_08560 SM00322 K homology RNA-binding domain DOE78_08560 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DOE78_08590 SM00729 Elongator protein 3, MiaB family, Radical SAM DOE78_08605 SM00533 DNA-binding domain of DNA mismatch repair MUTS family DOE78_08605 SM00534 ATPase domain of DNA mismatch repair MUTS family DOE78_08610 SM00853 MutL C terminal dimerisation domain DOE78_08610 SM01340 DOE78_08610 DOE78_08640 SM00382 ATPases associated with a variety of cellular activities DOE78_08655 SM00422 helix_turn_helix, mercury resistance DOE78_08660 SM01230 DOE78_08660 DOE78_08680 SM00857 Resolvase, N terminal domain DOE78_08690 SM00861 Transketolase, pyrimidine binding domain DOE78_08710 SM00382 ATPases associated with a variety of cellular activities DOE78_08715 SM00382 ATPases associated with a variety of cellular activities DOE78_08730 SM00448 cheY-homologous receiver domain DOE78_08800 SM00342 helix_turn_helix, arabinose operon control protein DOE78_08800 SM00448 cheY-homologous receiver domain DOE78_08805 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DOE78_08905 SM00382 ATPases associated with a variety of cellular activities DOE78_08910 SM00382 ATPases associated with a variety of cellular activities DOE78_08915 SM00387 Histidine kinase-like ATPases DOE78_08920 SM00342 helix_turn_helix, arabinose operon control protein DOE78_08920 SM00448 cheY-homologous receiver domain DOE78_08970 SM00382 ATPases associated with a variety of cellular activities DOE78_09010 SM00382 ATPases associated with a variety of cellular activities DOE78_09015 SM00382 ATPases associated with a variety of cellular activities DOE78_09065 SM00861 Transketolase, pyrimidine binding domain DOE78_09080 SM00829 Enoylreductase DOE78_09085 SM00382 ATPases associated with a variety of cellular activities DOE78_09090 SM00354 helix_turn _helix lactose operon repressor DOE78_09110 SM00640 Glycosyl hydrolases family 32 DOE78_09115 SM00560 LamG-like jellyroll fold domain DOE78_09115 SM00640 Glycosyl hydrolases family 32 DOE78_09185 SM00346 helix_turn_helix isocitrate lyase regulation DOE78_09225 SM00859 Semialdehyde dehydrogenase, NAD binding domain DOE78_09255 SM00345 helix_turn_helix gluconate operon transcriptional repressor DOE78_09255 SM00866 DOE78_09255 DOE78_09320 SM00091 PAS domain DOE78_09320 SM00387 Histidine kinase-like ATPases DOE78_09325 SM00448 cheY-homologous receiver domain DOE78_09335 SM00382 ATPases associated with a variety of cellular activities DOE78_09465 SM00849 Metallo-beta-lactamase superfamily DOE78_09490 SM00421 helix_turn_helix, Lux Regulon DOE78_09505 SM00855 Phosphoglycerate mutase family DOE78_09545 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) DOE78_09545 SM00091 PAS domain DOE78_09545 SM00331 Sigma factor PP2C-like phosphatases DOE78_09560 SM00382 ATPases associated with a variety of cellular activities DOE78_09575 SM00422 helix_turn_helix, mercury resistance DOE78_09590 SM00984 UDP binding domain DOE78_09665 SM00984 UDP binding domain DOE78_09705 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DOE78_09720 SM00347 helix_turn_helix multiple antibiotic resistance protein DOE78_09750 SM00533 DNA-binding domain of DNA mismatch repair MUTS family DOE78_09750 SM00534 ATPase domain of DNA mismatch repair MUTS family DOE78_09770 SM00052 Putative diguanylate phosphodiesterase DOE78_09770 SM00267 diguanylate cyclase DOE78_09805 SM00354 helix_turn _helix lactose operon repressor DOE78_09815 SM00267 diguanylate cyclase DOE78_09835 SM00387 Histidine kinase-like ATPases DOE78_09835 SM00388 His Kinase A (phosphoacceptor) domain DOE78_09845 SM00382 ATPases associated with a variety of cellular activities DOE78_09865 SM00318 Staphylococcal nuclease homologues DOE78_09880 SM00345 helix_turn_helix gluconate operon transcriptional repressor DOE78_09900 SM00267 diguanylate cyclase DOE78_09915 SM00954 Region found in RelA / SpoT proteins DOE78_09920 SM00072 Guanylate kinase homologues. DOE78_09975 SM00052 Putative diguanylate phosphodiesterase DOE78_09975 SM00267 diguanylate cyclase DOE78_10025 SM00347 helix_turn_helix multiple antibiotic resistance protein DOE78_10030 SM00363 S4 RNA-binding domain DOE78_10045 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DOE78_10045 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DOE78_10050 SM00387 Histidine kinase-like ATPases DOE78_10050 SM00388 His Kinase A (phosphoacceptor) domain DOE78_10155 SM00382 ATPases associated with a variety of cellular activities DOE78_10170 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DOE78_10190 SM00849 Metallo-beta-lactamase superfamily DOE78_10195 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) DOE78_10195 SM00387 Histidine kinase-like ATPases DOE78_10195 SM00388 His Kinase A (phosphoacceptor) domain DOE78_10240 SM00829 Enoylreductase DOE78_10265 SM00062 Bacterial periplasmic substrate-binding proteins DOE78_10270 SM00382 ATPases associated with a variety of cellular activities DOE78_10310 SM00354 helix_turn _helix lactose operon repressor DOE78_10320 SM00640 Glycosyl hydrolases family 32 DOE78_10375 SM00903 Flavin reductase like domain DOE78_10415 SM00347 helix_turn_helix multiple antibiotic resistance protein DOE78_10430 SM00091 PAS domain DOE78_10430 SM00382 ATPases associated with a variety of cellular activities DOE78_10445 SM00530 Helix-turn-helix XRE-family like proteins DOE78_10450 SM00870 DOE78_10450 DOE78_10470 SM00052 Putative diguanylate phosphodiesterase DOE78_10470 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. DOE78_10470 SM00267 diguanylate cyclase DOE78_10480 SM00257 Lysin motif DOE78_10485 SM00267 diguanylate cyclase DOE78_10490 SM00530 Helix-turn-helix XRE-family like proteins DOE78_10515 SM00060 Fibronectin type 3 domain DOE78_10520 SM00052 Putative diguanylate phosphodiesterase DOE78_10520 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) DOE78_10520 SM00091 PAS domain DOE78_10520 SM00267 diguanylate cyclase DOE78_10545 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DOE78_10545 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DOE78_10570 SM00345 helix_turn_helix gluconate operon transcriptional repressor DOE78_10610 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DOE78_10610 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DOE78_10630 SM00100 Cyclic nucleotide-monophosphate binding domain DOE78_10660 SM00899 DOE78_10660 DOE78_10675 SM00387 Histidine kinase-like ATPases DOE78_10675 SM00388 His Kinase A (phosphoacceptor) domain DOE78_10680 SM00345 helix_turn_helix gluconate operon transcriptional repressor DOE78_10680 SM00866 DOE78_10680 DOE78_10690 SM00382 ATPases associated with a variety of cellular activities DOE78_10700 SM00062 Bacterial periplasmic substrate-binding proteins DOE78_10700 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. DOE78_10710 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DOE78_10720 SM00420 helix_turn_helix, Deoxyribose operon repressor DOE78_10800 SM00448 cheY-homologous receiver domain DOE78_10800 SM00862 Transcriptional regulatory protein, C terminal DOE78_10805 SM00387 Histidine kinase-like ATPases DOE78_10805 SM00388 His Kinase A (phosphoacceptor) domain DOE78_10845 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DOE78_10890 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DOE78_10890 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DOE78_10910 SM00387 Histidine kinase-like ATPases DOE78_10910 SM00388 His Kinase A (phosphoacceptor) domain DOE78_10975 SM00342 helix_turn_helix, arabinose operon control protein DOE78_10980 SM00347 helix_turn_helix multiple antibiotic resistance protein DOE78_11045 SM00530 Helix-turn-helix XRE-family like proteins DOE78_11065 SM01230 DOE78_11065 DOE78_11080 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DOE78_11085 SM00342 helix_turn_helix, arabinose operon control protein DOE78_11085 SM00448 cheY-homologous receiver domain DOE78_11145 SM00387 Histidine kinase-like ATPases DOE78_11155 SM00382 ATPases associated with a variety of cellular activities DOE78_11220 SM00342 helix_turn_helix, arabinose operon control protein DOE78_11235 SM00347 helix_turn_helix multiple antibiotic resistance protein DOE78_11310 SM00267 diguanylate cyclase DOE78_11320 SM00028 Tetratricopeptide repeats DOE78_11395 SM00829 Enoylreductase DOE78_11405 SM00829 Enoylreductase DOE78_11420 SM00354 helix_turn _helix lactose operon repressor DOE78_11425 SM00530 Helix-turn-helix XRE-family like proteins DOE78_11545 SM00318 Staphylococcal nuclease homologues DOE78_11570 SM00382 ATPases associated with a variety of cellular activities DOE78_11625 SM00829 Enoylreductase DOE78_11630 SM00382 ATPases associated with a variety of cellular activities DOE78_11645 SM00342 helix_turn_helix, arabinose operon control protein DOE78_11660 SM00829 Enoylreductase DOE78_11670 SM00861 Transketolase, pyrimidine binding domain DOE78_11710 SM00382 ATPases associated with a variety of cellular activities DOE78_11755 SM00347 helix_turn_helix multiple antibiotic resistance protein DOE78_11775 SM00342 helix_turn_helix, arabinose operon control protein DOE78_11775 SM00448 cheY-homologous receiver domain DOE78_11790 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DOE78_11800 SM01092 CO dehydrogenase flavoprotein C-terminal domain DOE78_11865 SM00354 helix_turn _helix lactose operon repressor DOE78_11890 SM00342 helix_turn_helix, arabinose operon control protein DOE78_11920 SM00382 ATPases associated with a variety of cellular activities DOE78_11925 SM00052 Putative diguanylate phosphodiesterase DOE78_11925 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) DOE78_11925 SM00091 PAS domain DOE78_11925 SM00267 diguanylate cyclase DOE78_11945 SM00342 helix_turn_helix, arabinose operon control protein DOE78_11945 SM00448 cheY-homologous receiver domain DOE78_11965 SM00640 Glycosyl hydrolases family 32 DOE78_11975 SM01091 Transporter associated domain DOE78_11990 SM00833 Cobalamin synthesis protein cobW C-terminal domain DOE78_12020 SM00382 ATPases associated with a variety of cellular activities DOE78_12025 SM00382 ATPases associated with a variety of cellular activities DOE78_12045 SM00354 helix_turn _helix lactose operon repressor DOE78_12085 SM00345 helix_turn_helix gluconate operon transcriptional repressor DOE78_12085 SM00895 DOE78_12085 DOE78_12095 SM00382 ATPases associated with a variety of cellular activities DOE78_12095 SM00930 DOE78_12095 DOE78_12165 SM00506 Appr-1"-p processing enzyme DOE78_12190 SM00642 Alpha-amylase domain DOE78_12200 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DOE78_12200 SM00387 Histidine kinase-like ATPases DOE78_12205 SM00342 helix_turn_helix, arabinose operon control protein DOE78_12205 SM00448 cheY-homologous receiver domain DOE78_12265 SM00411 bacterial (prokaryotic) histone like domain DOE78_12270 SM00354 helix_turn _helix lactose operon repressor DOE78_12295 SM00382 ATPases associated with a variety of cellular activities DOE78_12305 SM01217 DOE78_12305 DOE78_12395 SM01119 DOE78_12395 DOE78_12405 SM00917 LeuA allosteric (dimerisation) domain DOE78_12420 SM00914 DOE78_12420 DOE78_12510 SM00347 helix_turn_helix multiple antibiotic resistance protein DOE78_12575 SM00331 Sigma factor PP2C-like phosphatases DOE78_12580 SM00091 PAS domain DOE78_12660 SM01240 DOE78_12660 DOE78_12665 SM00014 Acid phosphatase homologues DOE78_12705 SM00422 helix_turn_helix, mercury resistance DOE78_12845 SM00347 helix_turn_helix multiple antibiotic resistance protein DOE78_12875 SM00382 ATPases associated with a variety of cellular activities DOE78_12965 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DOE78_12965 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DOE78_12980 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DOE78_12980 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DOE78_13005 SM00876 Biotin and Thiamin Synthesis associated domain DOE78_13020 SM00382 ATPases associated with a variety of cellular activities DOE78_13055 SM00257 Lysin motif DOE78_13055 SM00636 DOE78_13055 DOE78_13100 SM00448 cheY-homologous receiver domain DOE78_13100 SM00862 Transcriptional regulatory protein, C terminal DOE78_13105 SM00387 Histidine kinase-like ATPases DOE78_13105 SM00388 His Kinase A (phosphoacceptor) domain DOE78_13170 SM00914 DOE78_13170 DOE78_13200 SM00357 Cold shock protein domain DOE78_13270 SM01002 Alanine dehydrogenase/PNT, C-terminal domain DOE78_13270 SM01003 Alanine dehydrogenase/PNT, N-terminal domain DOE78_13320 SM00257 Lysin motif DOE78_13330 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) DOE78_13330 SM00091 PAS domain DOE78_13330 SM00387 Histidine kinase-like ATPases DOE78_13330 SM00388 His Kinase A (phosphoacceptor) domain DOE78_13400 SM00382 ATPases associated with a variety of cellular activities DOE78_13490 SM00382 ATPases associated with a variety of cellular activities DOE78_13515 SM00854 Bacterial capsule synthesis protein PGA_cap DOE78_13525 SM00387 Histidine kinase-like ATPases DOE78_13530 SM01207 DOE78_13530 DOE78_13535 SM00636 DOE78_13535 DOE78_13540 SM00881 CoA binding domain DOE78_13545 SM00387 Histidine kinase-like ATPases DOE78_13545 SM00433 TopoisomeraseII DOE78_13550 SM00434 DNA Topoisomerase IV DOE78_13615 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DOE78_13620 SM00342 helix_turn_helix, arabinose operon control protein DOE78_13620 SM00448 cheY-homologous receiver domain DOE78_13710 SM00560 LamG-like jellyroll fold domain DOE78_13710 SM00640 Glycosyl hydrolases family 32 DOE78_13715 SM00871 Bacterial transcription activator, effector binding domain DOE78_13865 SM00342 helix_turn_helix, arabinose operon control protein DOE78_13865 SM00448 cheY-homologous receiver domain DOE78_13870 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DOE78_13925 SM00387 Histidine kinase-like ATPases DOE78_13925 SM00388 His Kinase A (phosphoacceptor) domain DOE78_13940 SM01038 Beta galactosidase small chain DOE78_13960 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DOE78_13965 SM00342 helix_turn_helix, arabinose operon control protein DOE78_13965 SM00448 cheY-homologous receiver domain DOE78_14000 SM00347 helix_turn_helix multiple antibiotic resistance protein DOE78_14015 SM00382 ATPases associated with a variety of cellular activities DOE78_14020 SM00382 ATPases associated with a variety of cellular activities DOE78_14025 SM00347 helix_turn_helix multiple antibiotic resistance protein DOE78_14035 SM00345 helix_turn_helix gluconate operon transcriptional repressor DOE78_14045 SM00345 helix_turn_helix gluconate operon transcriptional repressor DOE78_14045 SM00866 DOE78_14045 DOE78_14055 SM01329 DOE78_14055 DOE78_14065 SM00861 Transketolase, pyrimidine binding domain DOE78_14090 SM00829 Enoylreductase DOE78_14095 SM00829 Enoylreductase DOE78_14100 SM00354 helix_turn _helix lactose operon repressor DOE78_14140 SM00382 ATPases associated with a variety of cellular activities DOE78_14150 SM00849 Metallo-beta-lactamase superfamily DOE78_14165 SM00829 Enoylreductase DOE78_14190 SM00354 helix_turn _helix lactose operon repressor DOE78_14210 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) DOE78_14210 SM00091 PAS domain DOE78_14210 SM00267 diguanylate cyclase DOE78_14215 SM01007 Class II Aldolase and Adducin N-terminal domain DOE78_14300 SM00257 Lysin motif DOE78_14315 SM00421 helix_turn_helix, Lux Regulon DOE78_14315 SM00448 cheY-homologous receiver domain DOE78_14320 SM00387 Histidine kinase-like ATPases DOE78_14385 SM00490 helicase superfamily c-terminal domain DOE78_14455 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) DOE78_14455 SM00091 PAS domain DOE78_14455 SM00387 Histidine kinase-like ATPases DOE78_14455 SM00388 His Kinase A (phosphoacceptor) domain DOE78_14495 SM00100 Cyclic nucleotide-monophosphate binding domain DOE78_14495 SM00419 helix_turn_helix, cAMP Regulatory protein DOE78_14515 SM00382 ATPases associated with a variety of cellular activities DOE78_14625 SM01018 B12 binding domain DOE78_14630 SM00796 Allophanate hydrolase subunit 1 DOE78_14635 SM00797 Allophanate hydrolase subunit 2 DOE78_14670 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) DOE78_14670 SM00387 Histidine kinase-like ATPases DOE78_14680 SM00421 helix_turn_helix, Lux Regulon DOE78_14680 SM00448 cheY-homologous receiver domain DOE78_14720 SM00926 Molybdopterin oxidoreductase Fe4S4 domain DOE78_14730 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DOE78_14745 SM00646 DOE78_14745 DOE78_14750 SM01091 Transporter associated domain DOE78_14775 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DOE78_14775 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DOE78_14785 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain DOE78_14795 SM00382 ATPases associated with a variety of cellular activities DOE78_14805 SM01091 Transporter associated domain DOE78_14830 SM00382 ATPases associated with a variety of cellular activities DOE78_14835 SM00345 helix_turn_helix gluconate operon transcriptional repressor DOE78_14840 SM00829 Enoylreductase DOE78_14845 SM00422 helix_turn_helix, mercury resistance DOE78_14875 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) DOE78_14875 SM00091 PAS domain DOE78_14875 SM00387 Histidine kinase-like ATPases DOE78_14875 SM00388 His Kinase A (phosphoacceptor) domain DOE78_14885 SM00382 ATPases associated with a variety of cellular activities DOE78_14925 SM00465 GIY-YIG type nucleases (URI domain) DOE78_14940 SM00387 Histidine kinase-like ATPases DOE78_14940 SM00388 His Kinase A (phosphoacceptor) domain DOE78_15005 SM00530 Helix-turn-helix XRE-family like proteins DOE78_15010 SM00382 ATPases associated with a variety of cellular activities DOE78_15035 SM00849 Metallo-beta-lactamase superfamily DOE78_15100 SM00420 helix_turn_helix, Deoxyribose operon repressor DOE78_15100 SM01134 DOE78_15100 DOE78_15145 SM00387 Histidine kinase-like ATPases DOE78_15145 SM00388 His Kinase A (phosphoacceptor) domain DOE78_15160 SM00357 Cold shock protein domain DOE78_15165 SM00487 DEAD-like helicases superfamily DOE78_15165 SM00490 helicase superfamily c-terminal domain DOE78_15170 SM00357 Cold shock protein domain DOE78_15200 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen DOE78_15270 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DOE78_15300 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DOE78_15300 SM00387 Histidine kinase-like ATPases DOE78_15300 SM00388 His Kinase A (phosphoacceptor) domain DOE78_15305 SM00448 cheY-homologous receiver domain DOE78_15305 SM00862 Transcriptional regulatory protein, C terminal DOE78_15330 SM00833 Cobalamin synthesis protein cobW C-terminal domain DOE78_15340 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DOE78_15340 SM00245 tail specific protease DOE78_15365 SM00220 Serine/Threonine protein kinases, catalytic domain DOE78_15395 SM00850 LytTr DNA-binding domain DOE78_15400 SM00448 cheY-homologous receiver domain DOE78_15420 SM00382 ATPases associated with a variety of cellular activities DOE78_15435 SM00882 Coenzyme A transferase DOE78_15440 SM00882 Coenzyme A transferase DOE78_15505 SM00387 Histidine kinase-like ATPases DOE78_15505 SM00388 His Kinase A (phosphoacceptor) domain DOE78_15540 SM00563 Phosphate acyltransferases DOE78_15575 SM00567 E-Z type HEAT repeats DOE78_15575 SM00932 Scaffold protein Nfu/NifU N terminal DOE78_15580 SM00382 ATPases associated with a variety of cellular activities DOE78_15585 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DOE78_15615 SM00529 Helix-turn-helix diphteria tox regulatory element DOE78_15620 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain DOE78_15620 SM00437 Bacterial DNA topoisomerase I DNA-binding domain DOE78_15620 SM00493 DOE78_15620 DOE78_15675 SM00382 ATPases associated with a variety of cellular activities DOE78_15705 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DOE78_15710 SM00357 Cold shock protein domain DOE78_15750 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs DOE78_15750 SM00475 5'-3' exonuclease DOE78_15780 SM00822 DOE78_15780 DOE78_15810 SM00491 DOE78_15810 DOE78_15815 SM00981 DOE78_15815 DOE78_15845 SM00487 DEAD-like helicases superfamily DOE78_15845 SM00490 helicase superfamily c-terminal domain DOE78_15850 SM00100 Cyclic nucleotide-monophosphate binding domain DOE78_15850 SM00419 helix_turn_helix, cAMP Regulatory protein DOE78_15900 SM00478 endonuclease III DOE78_15900 SM00525 DOE78_15900 DOE78_15935 SM00479 DOE78_15935 DOE78_15935 SM00487 DEAD-like helicases superfamily DOE78_15935 SM00491 DOE78_15935 DOE78_15975 SM00851 MGS-like domain DOE78_16030 SM00914 DOE78_16030 DOE78_16035 SM00028 Tetratricopeptide repeats DOE78_16075 SM00138 Methyltransferase, chemotaxis proteins DOE78_16080 SM00562 DOE78_16080 DOE78_16110 SM00411 bacterial (prokaryotic) histone like domain DOE78_16160 SM01240 DOE78_16160 DOE78_16165 SM00316 Ribosomal protein S1-like RNA-binding domain DOE78_16170 SM00563 Phosphate acyltransferases DOE78_16205 SM00870 DOE78_16205 DOE78_16215 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DOE78_16225 SM00422 helix_turn_helix, mercury resistance DOE78_16250 SM00257 Lysin motif DOE78_16260 SM00487 DEAD-like helicases superfamily DOE78_16260 SM00490 helicase superfamily c-terminal domain DOE78_16280 SM01131 DOE78_16280 DOE78_16295 SM00257 Lysin motif DOE78_16315 SM00448 cheY-homologous receiver domain DOE78_16315 SM00862 Transcriptional regulatory protein, C terminal DOE78_16335 SM00363 S4 RNA-binding domain DOE78_16420 SM00387 Histidine kinase-like ATPases DOE78_16430 SM00936 Penicillin-binding protein 5, C-terminal domain DOE78_16435 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain DOE78_16500 SM00882 Coenzyme A transferase DOE78_16505 SM00882 Coenzyme A transferase DOE78_16515 SM00345 helix_turn_helix gluconate operon transcriptional repressor DOE78_16560 SM00704 CDGSH-type zinc finger. Function unknown. DOE78_16585 SM00345 helix_turn_helix gluconate operon transcriptional repressor DOE78_16595 SM00849 Metallo-beta-lactamase superfamily DOE78_16620 SM01117 DOE78_16620 DOE78_16680 SM00382 ATPases associated with a variety of cellular activities DOE78_16690 SM01350 DOE78_16690 DOE78_16700 SM00260 Two component signalling adaptor domain DOE78_16755 SM00861 Transketolase, pyrimidine binding domain DOE78_16775 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase DOE78_16785 SM00091 PAS domain DOE78_16785 SM00382 ATPases associated with a variety of cellular activities DOE78_16815 SM00448 cheY-homologous receiver domain DOE78_16820 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DOE78_16835 SM00363 S4 RNA-binding domain DOE78_16840 SM00861 Transketolase, pyrimidine binding domain DOE78_16875 SM00878 Biotin carboxylase C-terminal domain DOE78_16900 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. DOE78_16905 SM00421 helix_turn_helix, Lux Regulon DOE78_16905 SM00448 cheY-homologous receiver domain DOE78_16945 SM00382 ATPases associated with a variety of cellular activities DOE78_16955 SM00841 Elongation factor P, C-terminal DOE78_16955 SM01185 DOE78_16955 DOE78_17005 SM00450 Rhodanese Homology Domain DOE78_17025 SM00487 DEAD-like helicases superfamily DOE78_17025 SM00490 helicase superfamily c-terminal domain DOE78_17085 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DOE78_17100 SM00849 Metallo-beta-lactamase superfamily DOE78_17115 SM00257 Lysin motif DOE78_17115 SM00631 DOE78_17115 DOE78_17140 SM00028 Tetratricopeptide repeats DOE78_17205 SM00382 ATPases associated with a variety of cellular activities DOE78_17240 SM00100 Cyclic nucleotide-monophosphate binding domain DOE78_17240 SM00419 helix_turn_helix, cAMP Regulatory protein DOE78_17290 SM00382 ATPases associated with a variety of cellular activities DOE78_17300 SM00518 AP endonuclease family 2 DOE78_17305 SM00487 DEAD-like helicases superfamily DOE78_17305 SM00490 helicase superfamily c-terminal domain DOE78_17365 SM00116 Domain in cystathionine beta-synthase and other proteins. DOE78_17410 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DOE78_17415 SM00322 K homology RNA-binding domain DOE78_17460 SM01133 DOE78_17460 DOE78_17465 SM00729 Elongator protein 3, MiaB family, Radical SAM DOE78_17480 SM00271 DnaJ molecular chaperone homology domain DOE78_17500 SM00729 Elongator protein 3, MiaB family, Radical SAM DOE78_17505 SM00838 Elongation factor G C-terminus DOE78_17540 SM00849 Metallo-beta-lactamase superfamily DOE78_17550 SM00278 Helix-hairpin-helix DNA-binding motif class 1 DOE78_17570 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DOE78_17580 SM01103 DOE78_17580 DOE78_17685 SM00732 Likely ribonuclease with RNase H fold. DOE78_17695 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain DOE78_17720 SM00382 ATPases associated with a variety of cellular activities DOE78_17725 SM00028 Tetratricopeptide repeats DOE78_17750 SM00382 ATPases associated with a variety of cellular activities DOE78_17775 SM00287 Bacterial SH3 domain homologues DOE78_17775 SM00646 DOE78_17775 DOE78_17785 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DOE78_17785 SM00954 Region found in RelA / SpoT proteins DOE78_17830 SM01323 DOE78_17830 DOE78_17850 SM00382 ATPases associated with a variety of cellular activities DOE78_17855 SM00278 Helix-hairpin-helix DNA-binding motif class 1 DOE78_17875 SM00257 Lysin motif DOE78_17920 SM01317 DOE78_17920 DOE78_17940 SM00316 Ribosomal protein S1-like RNA-binding domain DOE78_18005 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. DOE78_18005 SM00267 diguanylate cyclase DOE78_18030 SM00257 Lysin motif DOE78_18040 SM01004 Delta-aminolevulinic acid dehydratase DOE78_18075 SM00382 ATPases associated with a variety of cellular activities DOE78_18075 SM00464 Found in ATP-dependent protease La (LON) DOE78_18080 SM00382 ATPases associated with a variety of cellular activities DOE78_18085 SM00382 ATPases associated with a variety of cellular activities DOE78_18085 SM00994 ClpX C4-type zinc finger DOE78_18085 SM01086 C-terminal, D2-small domain, of ClpB protein DOE78_18115 SM00917 LeuA allosteric (dimerisation) domain DOE78_18155 SM00382 ATPases associated with a variety of cellular activities DOE78_18160 SM00382 ATPases associated with a variety of cellular activities DOE78_18185 SM00909 Sporulation and spore germination DOE78_18195 SM00347 helix_turn_helix multiple antibiotic resistance protein DOE78_18200 SM00421 helix_turn_helix, Lux Regulon DOE78_18235 SM00465 GIY-YIG type nucleases (URI domain) DOE78_18245 SM00893 Electron transfer flavoprotein domain DOE78_18250 SM00893 Electron transfer flavoprotein domain DOE78_18275 SM00463 Small MutS-related domain DOE78_18275 SM00533 DNA-binding domain of DNA mismatch repair MUTS family DOE78_18275 SM00534 ATPase domain of DNA mismatch repair MUTS family DOE78_18280 SM00278 Helix-hairpin-helix DNA-binding motif class 1 DOE78_18280 SM00481 DNA polymerase alpha chain like domain DOE78_18280 SM00483 DNA polymerase X family DOE78_18300 SM00873 B3/4 domain DOE78_18300 SM00874 tRNA synthetase B5 domain DOE78_18300 SM00896 Ferredoxin-fold anticodon binding domain DOE78_18310 SM00967 RNA 2'-O ribose methyltransferase substrate binding DOE78_18360 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain DOE78_18370 SM00382 ATPases associated with a variety of cellular activities DOE78_18395 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DOE78_18410 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain DOE78_18410 SM01232 DOE78_18410 DOE78_18415 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs DOE78_18415 SM00474 3'-5' exonuclease DOE78_18415 SM00475 5'-3' exonuclease DOE78_18415 SM00482 DNA polymerase A domain DOE78_18420 SM00244 prohibitin homologues DOE78_18425 SM00244 prohibitin homologues DOE78_18430 SM00091 PAS domain DOE78_18430 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DOE78_18430 SM00387 Histidine kinase-like ATPases DOE78_18430 SM00388 His Kinase A (phosphoacceptor) domain DOE78_18435 SM00448 cheY-homologous receiver domain DOE78_18435 SM00862 Transcriptional regulatory protein, C terminal DOE78_18450 SM01329 DOE78_18450 DOE78_18495 SM00345 helix_turn_helix gluconate operon transcriptional repressor DOE78_18500 SM00919 Malic enzyme, NAD binding domain DOE78_18500 SM01274 DOE78_18500 DOE78_18505 SM00481 DNA polymerase alpha chain like domain DOE78_18530 SM00116 Domain in cystathionine beta-synthase and other proteins. DOE78_18540 SM00849 Metallo-beta-lactamase superfamily DOE78_18550 SM01002 Alanine dehydrogenase/PNT, C-terminal domain DOE78_18550 SM01003 Alanine dehydrogenase/PNT, N-terminal domain DOE78_18585 SM00852 Probable molybdopterin binding domain DOE78_18655 SM00981 DOE78_18655 DOE78_18690 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. DOE78_18690 SM00267 diguanylate cyclase DOE78_18700 SM00363 S4 RNA-binding domain DOE78_18700 SM01390 DOE78_18700 DOE78_18710 SM00857 Resolvase, N terminal domain DOE78_18785 SM00646 DOE78_18785 DOE78_18970 SM00834 Putative regulatory protein DOE78_18990 SM00382 ATPases associated with a variety of cellular activities DOE78_19035 SM00380 DNA-binding domain in plant proteins such as APETALA2 and EREBPs DOE78_19040 SM00482 DNA polymerase A domain DOE78_19085 SM00493 DOE78_19085 DOE78_19160 SM00363 S4 RNA-binding domain DOE78_19180 SM00116 Domain in cystathionine beta-synthase and other proteins. DOE78_19200 SM00354 helix_turn _helix lactose operon repressor DOE78_19205 SM00830 Chorismate mutase type II DOE78_19210 SM00842 Cell division protein FtsA DOE78_19315 SM00642 Alpha-amylase domain DOE78_19320 SM00046 Diacylglycerol kinase catalytic domain (presumed) DOE78_19355 SM00382 ATPases associated with a variety of cellular activities DOE78_19360 SM00248 ankyrin repeats DOE78_19365 SM00420 helix_turn_helix, Deoxyribose operon repressor DOE78_19370 SM00363 S4 RNA-binding domain DOE78_19390 SM00450 Rhodanese Homology Domain DOE78_19410 SM00091 PAS domain DOE78_19410 SM00382 ATPases associated with a variety of cellular activities DOE78_19435 SM00729 Elongator protein 3, MiaB family, Radical SAM DOE78_19495 SM00382 ATPases associated with a variety of cellular activities DOE78_19540 SM00155 Phospholipase D. Active site motifs. DOE78_19550 SM01234 DOE78_19550 DOE78_19555 SM00947 Carbonic anhydrase DOE78_19575 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain DOE78_19585 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DOE78_19640 SM00642 Alpha-amylase domain DOE78_19810 SM00342 helix_turn_helix, arabinose operon control protein DOE78_19820 SM00829 Enoylreductase DOE78_19840 SM00382 ATPases associated with a variety of cellular activities DOE78_19850 SM00354 helix_turn _helix lactose operon repressor DOE78_19855 SM00448 cheY-homologous receiver domain DOE78_19855 SM00850 LytTr DNA-binding domain DOE78_19860 SM00387 Histidine kinase-like ATPases DOE78_19860 SM00388 His Kinase A (phosphoacceptor) domain DOE78_19860 SM00448 cheY-homologous receiver domain DOE78_19955 SM00829 Enoylreductase DOE78_19990 SM00861 Transketolase, pyrimidine binding domain DOE78_20005 SM00858 DOE78_20005 DOE78_20035 SM00420 helix_turn_helix, Deoxyribose operon repressor DOE78_20035 SM01134 DOE78_20035 DOE78_20050 SM00382 ATPases associated with a variety of cellular activities DOE78_20065 SM00342 helix_turn_helix, arabinose operon control protein DOE78_20075 SM00633 Glycosyl hydrolase family 10 DOE78_20095 SM00342 helix_turn_helix, arabinose operon control protein DOE78_20095 SM00448 cheY-homologous receiver domain DOE78_20100 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DOE78_20100 SM00387 Histidine kinase-like ATPases DOE78_20180 SM00342 helix_turn_helix, arabinose operon control protein DOE78_20185 SM00606 Cellulose Binding Domain Type IV DOE78_20185 SM01217 DOE78_20185 DOE78_20220 SM00342 helix_turn_helix, arabinose operon control protein DOE78_20225 SM01217 DOE78_20225 DOE78_20240 SM00796 Allophanate hydrolase subunit 1 DOE78_20240 SM00797 Allophanate hydrolase subunit 2 DOE78_20240 SM00878 Biotin carboxylase C-terminal domain DOE78_20265 SM00460 Transglutaminase/protease-like homologues DOE78_20280 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain DOE78_20285 SM01092 CO dehydrogenase flavoprotein C-terminal domain DOE78_20305 SM00347 helix_turn_helix multiple antibiotic resistance protein DOE78_20310 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DOE78_20315 SM00382 ATPases associated with a variety of cellular activities DOE78_20355 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DOE78_20355 SM00387 Histidine kinase-like ATPases DOE78_20355 SM00388 His Kinase A (phosphoacceptor) domain DOE78_20360 SM00448 cheY-homologous receiver domain DOE78_20360 SM00862 Transcriptional regulatory protein, C terminal DOE78_20385 SM00382 ATPases associated with a variety of cellular activities DOE78_20430 SM00710 Parallel beta-helix repeats DOE78_20470 SM00530 Helix-turn-helix XRE-family like proteins DOE78_20545 SM00382 ATPases associated with a variety of cellular activities DOE78_20590 SM01060 DOE78_20590 DOE78_20620 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DOE78_20650 SM00345 helix_turn_helix gluconate operon transcriptional repressor DOE78_20650 SM00866 DOE78_20650 DOE78_20700 SM00867 YceI-like domain DOE78_20705 SM00346 helix_turn_helix isocitrate lyase regulation DOE78_20765 SM00316 Ribosomal protein S1-like RNA-binding domain DOE78_20775 SM00530 Helix-turn-helix XRE-family like proteins DOE78_20790 SM00344 helix_turn_helix ASNC type DOE78_20820 SM01298 DOE78_20820 DOE78_20825 SM00479 DOE78_20825 DOE78_21000 SM00341 Helicase and RNase D C-terminal DOE78_21000 SM00487 DEAD-like helicases superfamily DOE78_21000 SM00490 helicase superfamily c-terminal domain DOE78_21000 SM00956 DOE78_21000 DOE78_21050 SM00052 Putative diguanylate phosphodiesterase DOE78_21075 SM00729 Elongator protein 3, MiaB family, Radical SAM DOE78_21100 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DOE78_21140 SM00382 ATPases associated with a variety of cellular activities DOE78_21160 SM00382 ATPases associated with a variety of cellular activities DOE78_21160 SM00930 DOE78_21160 DOE78_21180 SM00493 DOE78_21180 DOE78_21235 SM00382 ATPases associated with a variety of cellular activities DOE78_21295 SM00347 helix_turn_helix multiple antibiotic resistance protein DOE78_21315 SM00855 Phosphoglycerate mutase family DOE78_21355 SM00382 ATPases associated with a variety of cellular activities DOE78_21355 SM00930 DOE78_21355 DOE78_21400 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DOE78_21425 SM00354 helix_turn _helix lactose operon repressor DOE78_21470 SM00345 helix_turn_helix gluconate operon transcriptional repressor DOE78_21470 SM00866 DOE78_21470 DOE78_21490 SM00345 helix_turn_helix gluconate operon transcriptional repressor DOE78_21490 SM00866 DOE78_21490 DOE78_21505 SM00448 cheY-homologous receiver domain DOE78_21505 SM00850 LytTr DNA-binding domain DOE78_21510 SM00387 Histidine kinase-like ATPases DOE78_21510 SM00388 His Kinase A (phosphoacceptor) domain DOE78_21515 SM00448 cheY-homologous receiver domain DOE78_21515 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DOE78_21550 SM01057 Eukaryotic-type carbonic anhydrase DOE78_21630 SM00091 PAS domain DOE78_21630 SM00382 ATPases associated with a variety of cellular activities DOE78_21645 SM00052 Putative diguanylate phosphodiesterase DOE78_21645 SM00267 diguanylate cyclase DOE78_21665 SM00014 Acid phosphatase homologues DOE78_21695 SM00450 Rhodanese Homology Domain DOE78_21720 SM00829 Enoylreductase DOE78_21745 SM00354 helix_turn _helix lactose operon repressor DOE78_21750 SM00635 Bacterial Ig-like domain 2 DOE78_21750 SM00640 Glycosyl hydrolases family 32 DOE78_21760 SM00640 Glycosyl hydrolases family 32 DOE78_21785 SM00342 helix_turn_helix, arabinose operon control protein DOE78_21785 SM00448 cheY-homologous receiver domain DOE78_21820 SM00354 helix_turn _helix lactose operon repressor DOE78_21850 SM00382 ATPases associated with a variety of cellular activities DOE78_21860 SM00357 Cold shock protein domain DOE78_22045 SM00316 Ribosomal protein S1-like RNA-binding domain DOE78_22045 SM00357 Cold shock protein domain DOE78_22045 SM00955 DOE78_22045 DOE78_22070 SM01192 DOE78_22070 DOE78_22070 SM01193 DOE78_22070 DOE78_22090 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain DOE78_22155 SM00028 Tetratricopeptide repeats DOE78_22225 SM00098 Alkaline phosphatase homologues DOE78_22245 SM00382 ATPases associated with a variety of cellular activities DOE78_22250 SM00487 DEAD-like helicases superfamily DOE78_22250 SM00490 helicase superfamily c-terminal domain DOE78_22265 SM00052 Putative diguanylate phosphodiesterase DOE78_22265 SM00091 PAS domain DOE78_22265 SM00267 diguanylate cyclase DOE78_22275 SM00347 helix_turn_helix multiple antibiotic resistance protein DOE78_22295 SM01061 CAT RNA binding domain DOE78_22320 SM01091 Transporter associated domain DOE78_22325 SM00422 helix_turn_helix, mercury resistance DOE78_22385 SM00226 Low molecular weight phosphatase family DOE78_22395 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DOE78_22400 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor DOE78_22450 SM00342 helix_turn_helix, arabinose operon control protein DOE78_22520 SM00091 PAS domain DOE78_22520 SM00387 Histidine kinase-like ATPases DOE78_22525 SM00448 cheY-homologous receiver domain DOE78_22530 SM00919 Malic enzyme, NAD binding domain DOE78_22530 SM01274 DOE78_22530 DOE78_22545 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DOE78_22545 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DOE78_22555 SM00861 Transketolase, pyrimidine binding domain DOE78_22580 SM00829 Enoylreductase DOE78_22605 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DOE78_22610 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DOE78_22610 SM00245 tail specific protease DOE78_22615 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DOE78_22620 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DOE78_22630 SM00640 Glycosyl hydrolases family 32 DOE78_22635 SM00640 Glycosyl hydrolases family 32 DOE78_22655 SM00354 helix_turn _helix lactose operon repressor DOE78_22680 SM00342 helix_turn_helix, arabinose operon control protein DOE78_22680 SM00448 cheY-homologous receiver domain DOE78_22685 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DOE78_22685 SM00387 Histidine kinase-like ATPases DOE78_22715 SM00382 ATPases associated with a variety of cellular activities DOE78_22750 SM00957 SecA DEAD-like domain DOE78_22750 SM00958 SecA preprotein cross-linking domain DOE78_22770 SM00382 ATPases associated with a variety of cellular activities DOE78_22785 SM00354 helix_turn _helix lactose operon repressor DOE78_22790 SM00060 Fibronectin type 3 domain DOE78_22815 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DOE78_22815 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DOE78_22950 SM00487 DEAD-like helicases superfamily DOE78_22950 SM00490 helicase superfamily c-terminal domain DOE78_22965 SM00421 helix_turn_helix, Lux Regulon DOE78_22965 SM00448 cheY-homologous receiver domain DOE78_22970 SM00387 Histidine kinase-like ATPases DOE78_23005 SM00984 UDP binding domain DOE78_23025 SM00646 DOE78_23025 DOE78_23145 SM00646 DOE78_23145 DOE78_23195 SM00382 ATPases associated with a variety of cellular activities DOE78_23215 SM00984 UDP binding domain DOE78_23315 SM00257 Lysin motif DOE78_23320 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DOE78_23340 SM00646 DOE78_23340 DOE78_23370 SM00646 DOE78_23370 DOE78_23410 SM00635 Bacterial Ig-like domain 2 DOE78_23410 SM00642 Alpha-amylase domain DOE78_23410 SM01065 Starch binding domain DOE78_23425 SM00642 Alpha-amylase domain DOE78_23450 SM00342 helix_turn_helix, arabinose operon control protein DOE78_23450 SM00448 cheY-homologous receiver domain DOE78_23455 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DOE78_23480 SM00487 DEAD-like helicases superfamily DOE78_23480 SM00490 helicase superfamily c-terminal domain DOE78_23550 SM00257 Lysin motif DOE78_23555 SM00479 DOE78_23555 DOE78_23560 SM00116 Domain in cystathionine beta-synthase and other proteins. DOE78_23680 SM00382 ATPases associated with a variety of cellular activities DOE78_23755 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). DOE78_23755 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DOE78_23760 SM00226 Low molecular weight phosphatase family DOE78_23790 SM00937 DOE78_23790 DOE78_23810 SM00357 Cold shock protein domain DOE78_23810 SM00382 ATPases associated with a variety of cellular activities DOE78_23810 SM00959 Rho termination factor, N-terminal domain DOE78_23830 SM00448 cheY-homologous receiver domain DOE78_23885 SM00155 Phospholipase D. Active site motifs. DOE78_23900 SM00450 Rhodanese Homology Domain DOE78_23905 SM00836 DALR anticodon binding domain DOE78_23905 SM01016 Arginyl tRNA synthetase N terminal dom DOE78_23950 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. DOE78_24005 SM00986 Uracil DNA glycosylase superfamily DOE78_24005 SM00987 UreE urease accessory protein, C-terminal domain DOE78_24070 SM00382 ATPases associated with a variety of cellular activities DOE78_24110 SM00984 UDP binding domain DOE78_24115 SM00642 Alpha-amylase domain DOE78_24125 SM00382 ATPases associated with a variety of cellular activities DOE78_24130 SM00382 ATPases associated with a variety of cellular activities DOE78_24135 SM00422 helix_turn_helix, mercury resistance DOE78_24155 SM00642 Alpha-amylase domain DOE78_24170 SM00363 S4 RNA-binding domain DOE78_24175 SM00984 UDP binding domain DOE78_24210 SM00116 Domain in cystathionine beta-synthase and other proteins. DOE78_24210 SM00382 ATPases associated with a variety of cellular activities DOE78_24220 SM00387 Histidine kinase-like ATPases DOE78_24225 SM00448 cheY-homologous receiver domain DOE78_24225 SM00850 LytTr DNA-binding domain DOE78_24240 SM00382 ATPases associated with a variety of cellular activities DOE78_24245 SM00382 ATPases associated with a variety of cellular activities DOE78_24310 SM00448 cheY-homologous receiver domain DOE78_24310 SM00862 Transcriptional regulatory protein, C terminal DOE78_24315 SM00387 Histidine kinase-like ATPases DOE78_24315 SM00388 His Kinase A (phosphoacceptor) domain DOE78_24350 SM00886 Stress responsive A/B Barrel Domain DOE78_24355 SM00345 helix_turn_helix gluconate operon transcriptional repressor DOE78_24355 SM00866 DOE78_24355 DOE78_24390 SM00347 helix_turn_helix multiple antibiotic resistance protein DOE78_24395 SM00345 helix_turn_helix gluconate operon transcriptional repressor DOE78_24395 SM00866 DOE78_24395 DOE78_24400 SM00642 Alpha-amylase domain DOE78_24410 SM00387 Histidine kinase-like ATPases DOE78_24410 SM00388 His Kinase A (phosphoacceptor) domain DOE78_24420 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase DOE78_24435 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase DOE78_24450 SM00382 ATPases associated with a variety of cellular activities DOE78_24455 SM00448 cheY-homologous receiver domain DOE78_24455 SM00850 LytTr DNA-binding domain DOE78_24510 SM00091 PAS domain DOE78_24510 SM00382 ATPases associated with a variety of cellular activities DOE78_24515 SM00855 Phosphoglycerate mutase family DOE78_24540 SM00342 helix_turn_helix, arabinose operon control protein DOE78_24540 SM00871 Bacterial transcription activator, effector binding domain DOE78_24555 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. DOE78_24560 SM00849 Metallo-beta-lactamase superfamily DOE78_24575 SM00091 PAS domain DOE78_24575 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain DOE78_24575 SM00387 Histidine kinase-like ATPases DOE78_24575 SM00388 His Kinase A (phosphoacceptor) domain DOE78_24580 SM00448 cheY-homologous receiver domain DOE78_24580 SM00862 Transcriptional regulatory protein, C terminal DOE78_24585 SM00257 Lysin motif DOE78_24585 SM01208 DOE78_24585 DOE78_24600 SM00788 Adenylosuccinate synthetase DOE78_24605 SM00382 ATPases associated with a variety of cellular activities DOE78_24615 SM00267 diguanylate cyclase DOE78_24645 SM00014 Acid phosphatase homologues DOE78_24655 SM00926 Molybdopterin oxidoreductase Fe4S4 domain DOE78_24680 SM00470 ParB-like nuclease domain DOE78_24695 SM00470 ParB-like nuclease domain DOE78_24705 SM01228 DOE78_24705 DOE78_24715 SM00393 Putative single-stranded nucleic acids-binding domain DOE78_24715 SM01245 DOE78_24715