QF06_00035 SM00347 helix_turn_helix multiple antibiotic resistance protein QF06_00060 SM00342 helix_turn_helix, arabinose operon control protein QF06_00120 SM00450 Rhodanese Homology Domain QF06_00140 SM00345 helix_turn_helix gluconate operon transcriptional repressor QF06_00140 SM00866 QF06_00140 QF06_00175 SM00387 Histidine kinase-like ATPases QF06_00180 SM00448 cheY-homologous receiver domain QF06_00185 SM01130 QF06_00185 QF06_00200 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain QF06_00205 SM00345 helix_turn_helix gluconate operon transcriptional repressor QF06_00205 SM00895 QF06_00205 QF06_00210 SM00858 QF06_00210 QF06_00230 SM00448 cheY-homologous receiver domain QF06_00230 SM00862 Transcriptional regulatory protein, C terminal QF06_00235 SM00387 Histidine kinase-like ATPases QF06_00235 SM00388 His Kinase A (phosphoacceptor) domain QF06_00240 SM00382 ATPases associated with a variety of cellular activities QF06_00260 SM00327 von Willebrand factor (vWF) type A domain QF06_00300 SM00870 QF06_00300 QF06_00320 SM00387 Histidine kinase-like ATPases QF06_00325 SM00448 cheY-homologous receiver domain QF06_00325 SM00850 LytTr DNA-binding domain QF06_00330 SM00382 ATPases associated with a variety of cellular activities QF06_00365 SM00028 Tetratricopeptide repeats QF06_00375 SM00642 Alpha-amylase domain QF06_00385 SM00382 ATPases associated with a variety of cellular activities QF06_00440 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor QF06_00445 SM00116 Domain in cystathionine beta-synthase and other proteins. QF06_00445 SM00382 ATPases associated with a variety of cellular activities QF06_00475 SM00632 QF06_00475 QF06_00475 SM00642 Alpha-amylase domain QF06_00495 SM00347 helix_turn_helix multiple antibiotic resistance protein QF06_00610 SM00926 Molybdopterin oxidoreductase Fe4S4 domain QF06_00635 SM00833 Cobalamin synthesis protein cobW C-terminal domain QF06_00645 SM00062 Bacterial periplasmic substrate-binding proteins QF06_00680 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QF06_00680 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QF06_00690 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family QF06_00700 SM00823 Phosphopantetheine attachment site QF06_00700 SM01294 QF06_00700 QF06_00705 SM00823 Phosphopantetheine attachment site QF06_00705 SM01294 QF06_00705 QF06_00710 SM00823 Phosphopantetheine attachment site QF06_00735 SM00345 helix_turn_helix gluconate operon transcriptional repressor QF06_00750 SM00382 ATPases associated with a variety of cellular activities QF06_00760 SM00062 Bacterial periplasmic substrate-binding proteins QF06_00800 SM00710 Parallel beta-helix repeats QF06_00800 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses QF06_00825 SM00382 ATPases associated with a variety of cellular activities QF06_00835 SM00448 cheY-homologous receiver domain QF06_00835 SM00862 Transcriptional regulatory protein, C terminal QF06_00840 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QF06_00840 SM00387 Histidine kinase-like ATPases QF06_00840 SM00388 His Kinase A (phosphoacceptor) domain QF06_00845 SM00028 Tetratricopeptide repeats QF06_00880 SM00382 ATPases associated with a variety of cellular activities QF06_00910 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor QF06_00915 SM00345 helix_turn_helix gluconate operon transcriptional repressor QF06_00950 SM00420 helix_turn_helix, Deoxyribose operon repressor QF06_00975 SM01329 QF06_00975 QF06_01015 SM00796 Allophanate hydrolase subunit 1 QF06_01020 SM00797 Allophanate hydrolase subunit 2 QF06_01025 SM00346 helix_turn_helix isocitrate lyase regulation QF06_01100 SM00344 helix_turn_helix ASNC type QF06_01105 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain QF06_01105 SM00437 Bacterial DNA topoisomerase I DNA-binding domain QF06_01105 SM00493 QF06_01105 QF06_01115 SM00267 diguanylate cyclase QF06_01200 SM00091 PAS domain QF06_01200 SM00387 Histidine kinase-like ATPases QF06_01205 SM00448 cheY-homologous receiver domain QF06_01220 SM00382 ATPases associated with a variety of cellular activities QF06_01260 SM00487 DEAD-like helicases superfamily QF06_01260 SM00490 helicase superfamily c-terminal domain QF06_01290 SM01005 Alanine racemase, C-terminal domain QF06_01315 SM00387 Histidine kinase-like ATPases QF06_01320 SM00331 Sigma factor PP2C-like phosphatases QF06_01340 SM00331 Sigma factor PP2C-like phosphatases QF06_01340 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain QF06_01345 SM00316 Ribosomal protein S1-like RNA-binding domain QF06_01345 SM00732 Likely ribonuclease with RNase H fold. QF06_01350 SM00731 SprT homologues. QF06_01400 SM00487 DEAD-like helicases superfamily QF06_01400 SM00491 QF06_01400 QF06_01415 SM00860 SMI1 / KNR4 family QF06_01435 SM00530 Helix-turn-helix XRE-family like proteins QF06_01450 SM00357 Cold shock protein domain QF06_01455 SM01058 CarD-like/TRCF domain QF06_01465 SM00342 helix_turn_helix, arabinose operon control protein QF06_01475 SM00342 helix_turn_helix, arabinose operon control protein QF06_01475 SM00871 Bacterial transcription activator, effector binding domain QF06_01480 SM00345 helix_turn_helix gluconate operon transcriptional repressor QF06_01520 SM00345 helix_turn_helix gluconate operon transcriptional repressor QF06_01565 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor QF06_01585 SM00345 helix_turn_helix gluconate operon transcriptional repressor QF06_01595 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor QF06_01610 SM00387 Histidine kinase-like ATPases QF06_01615 SM00421 helix_turn_helix, Lux Regulon QF06_01615 SM00448 cheY-homologous receiver domain QF06_01635 SM00422 helix_turn_helix, mercury resistance QF06_01635 SM00871 Bacterial transcription activator, effector binding domain QF06_01725 SM00382 ATPases associated with a variety of cellular activities QF06_01740 SM00347 helix_turn_helix multiple antibiotic resistance protein QF06_01755 SM00347 helix_turn_helix multiple antibiotic resistance protein QF06_01755 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor QF06_01770 SM00345 helix_turn_helix gluconate operon transcriptional repressor QF06_01770 SM00895 QF06_01770 QF06_01775 SM00257 Lysin motif QF06_01775 SM00636 QF06_01775 QF06_01790 SM00098 Alkaline phosphatase homologues QF06_01810 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. QF06_01845 SM00345 helix_turn_helix gluconate operon transcriptional repressor QF06_01845 SM00866 QF06_01845 QF06_01930 SM00382 ATPases associated with a variety of cellular activities QF06_01940 SM00881 CoA binding domain QF06_01965 SM00883 Chaperonin 10 Kd subunit QF06_01980 SM00028 Tetratricopeptide repeats QF06_01980 SM00382 ATPases associated with a variety of cellular activities QF06_01985 SM00829 Enoylreductase QF06_02030 SM00829 Enoylreductase QF06_02090 SM00460 Transglutaminase/protease-like homologues QF06_02130 SM01001 AIR carboxylase QF06_02140 SM00998 Adenylosuccinate lyase C-terminus QF06_02155 SM01211 QF06_02155 QF06_02180 SM00798 AICARFT/IMPCHase bienzyme QF06_02180 SM00851 MGS-like domain QF06_02185 SM01209 QF06_02185 QF06_02185 SM01210 QF06_02185 QF06_02190 SM00344 helix_turn_helix ASNC type QF06_02235 SM00278 Helix-hairpin-helix DNA-binding motif class 1 QF06_02235 SM00292 breast cancer carboxy-terminal domain QF06_02235 SM00532 Ligase N family QF06_02270 SM00845 GatB domain QF06_02285 SM00046 Diacylglycerol kinase catalytic domain (presumed) QF06_02315 SM00028 Tetratricopeptide repeats QF06_02380 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QF06_02380 SM00387 Histidine kinase-like ATPases QF06_02385 SM00342 helix_turn_helix, arabinose operon control protein QF06_02385 SM00448 cheY-homologous receiver domain QF06_02410 SM00342 helix_turn_helix, arabinose operon control protein QF06_02510 SM00347 helix_turn_helix multiple antibiotic resistance protein QF06_02585 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QF06_02590 SM00382 ATPases associated with a variety of cellular activities QF06_02600 SM00422 helix_turn_helix, mercury resistance QF06_02625 SM00382 ATPases associated with a variety of cellular activities QF06_02630 SM00487 DEAD-like helicases superfamily QF06_02630 SM00490 helicase superfamily c-terminal domain QF06_02640 SM00829 Enoylreductase QF06_02645 SM00382 ATPases associated with a variety of cellular activities QF06_02675 SM00656 QF06_02675 QF06_02685 SM00387 Histidine kinase-like ATPases QF06_02690 SM00448 cheY-homologous receiver domain QF06_02705 SM00849 Metallo-beta-lactamase superfamily QF06_02780 SM00642 Alpha-amylase domain QF06_02785 SM00345 helix_turn_helix gluconate operon transcriptional repressor QF06_02785 SM00866 QF06_02785 QF06_02815 SM00226 Low molecular weight phosphatase family QF06_02875 SM00478 endonuclease III QF06_02905 SM00861 Transketolase, pyrimidine binding domain QF06_02920 SM00382 ATPases associated with a variety of cellular activities QF06_02980 SM00382 ATPases associated with a variety of cellular activities QF06_02985 SM00382 ATPases associated with a variety of cellular activities QF06_03000 SM00387 Histidine kinase-like ATPases QF06_03005 SM00421 helix_turn_helix, Lux Regulon QF06_03005 SM00448 cheY-homologous receiver domain QF06_03010 SM00382 ATPases associated with a variety of cellular activities QF06_03050 SM00347 helix_turn_helix multiple antibiotic resistance protein QF06_03120 SM00287 Bacterial SH3 domain homologues QF06_03150 SM00478 endonuclease III QF06_03150 SM00525 QF06_03150 QF06_03180 SM00382 ATPases associated with a variety of cellular activities QF06_03340 SM01060 QF06_03340 QF06_03345 SM00382 ATPases associated with a variety of cellular activities QF06_03350 SM00062 Bacterial periplasmic substrate-binding proteins QF06_03380 SM00530 Helix-turn-helix XRE-family like proteins QF06_03395 SM00567 E-Z type HEAT repeats QF06_03425 SM00763 PrkA AAA domain QF06_03435 SM00347 helix_turn_helix multiple antibiotic resistance protein QF06_03465 SM00345 helix_turn_helix gluconate operon transcriptional repressor QF06_03470 SM00382 ATPases associated with a variety of cellular activities QF06_03475 SM00382 ATPases associated with a variety of cellular activities QF06_03485 SM00357 Cold shock protein domain QF06_03495 SM00267 diguanylate cyclase QF06_03535 SM00318 Staphylococcal nuclease homologues QF06_03545 SM00363 S4 RNA-binding domain QF06_03555 SM00116 Domain in cystathionine beta-synthase and other proteins. QF06_03600 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. QF06_03600 SM00387 Histidine kinase-like ATPases QF06_03605 SM00421 helix_turn_helix, Lux Regulon QF06_03605 SM00448 cheY-homologous receiver domain QF06_03625 SM00257 Lysin motif QF06_03645 SM00098 Alkaline phosphatase homologues QF06_03650 SM00257 Lysin motif QF06_03680 SM00345 helix_turn_helix gluconate operon transcriptional repressor QF06_03710 SM00563 Phosphate acyltransferases QF06_03715 SM01091 Transporter associated domain QF06_03720 SM00422 helix_turn_helix, mercury resistance QF06_03730 SM01091 Transporter associated domain QF06_03780 SM00382 ATPases associated with a variety of cellular activities QF06_03785 SM00382 ATPases associated with a variety of cellular activities QF06_03835 SM00729 Elongator protein 3, MiaB family, Radical SAM QF06_03865 SM00382 ATPases associated with a variety of cellular activities QF06_03885 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. QF06_03920 SM00347 helix_turn_helix multiple antibiotic resistance protein QF06_03950 SM00382 ATPases associated with a variety of cellular activities QF06_04035 SM01022 QF06_04035 QF06_04045 SM00849 Metallo-beta-lactamase superfamily QF06_04085 SM00829 Enoylreductase QF06_04095 SM00855 Phosphoglycerate mutase family QF06_04115 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QF06_04130 SM00914 QF06_04130 QF06_04145 SM00894 Excalibur calcium-binding domain QF06_04180 SM00347 helix_turn_helix multiple antibiotic resistance protein QF06_04215 SM00354 helix_turn _helix lactose operon repressor QF06_04350 SM00342 helix_turn_helix, arabinose operon control protein QF06_04355 SM00354 helix_turn _helix lactose operon repressor QF06_04375 SM00345 helix_turn_helix gluconate operon transcriptional repressor QF06_04420 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain QF06_04450 SM00316 Ribosomal protein S1-like RNA-binding domain QF06_04460 SM00752 Horizontally Transferred TransMembrane Domain QF06_04535 SM00859 Semialdehyde dehydrogenase, NAD binding domain QF06_04555 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain QF06_04560 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain QF06_04610 SM00825 Beta-ketoacyl synthase QF06_04620 SM00382 ATPases associated with a variety of cellular activities QF06_04625 SM00382 ATPases associated with a variety of cellular activities QF06_04670 SM00382 ATPases associated with a variety of cellular activities QF06_04675 SM00382 ATPases associated with a variety of cellular activities QF06_04740 SM01118 QF06_04740 QF06_04750 SM00954 Region found in RelA / SpoT proteins QF06_04975 SM00635 Bacterial Ig-like domain 2 QF06_05060 SM00926 Molybdopterin oxidoreductase Fe4S4 domain QF06_05060 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region QF06_05120 SM00382 ATPases associated with a variety of cellular activities QF06_05130 SM00835 Cupin QF06_05160 SM00829 Enoylreductase QF06_05180 SM00354 helix_turn _helix lactose operon repressor QF06_05190 SM00858 QF06_05190 QF06_05205 SM00382 ATPases associated with a variety of cellular activities QF06_05210 SM00028 Tetratricopeptide repeats QF06_05225 SM00257 Lysin motif QF06_05225 SM00644 QF06_05225 QF06_05250 SM00530 Helix-turn-helix XRE-family like proteins QF06_05265 SM00382 ATPases associated with a variety of cellular activities QF06_05355 SM00257 Lysin motif QF06_05420 SM00257 Lysin motif QF06_05420 SM00644 QF06_05420 QF06_05465 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. QF06_05490 SM00382 ATPases associated with a variety of cellular activities QF06_05505 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain QF06_05515 SM00382 ATPases associated with a variety of cellular activities QF06_05575 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase QF06_05590 SM00347 helix_turn_helix multiple antibiotic resistance protein QF06_05630 SM00382 ATPases associated with a variety of cellular activities QF06_05645 SM00448 cheY-homologous receiver domain QF06_05645 SM00862 Transcriptional regulatory protein, C terminal QF06_05650 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QF06_05650 SM00387 Histidine kinase-like ATPases QF06_05650 SM00388 His Kinase A (phosphoacceptor) domain QF06_05670 SM00116 Domain in cystathionine beta-synthase and other proteins. QF06_05670 SM00924 MgtE intracellular N domain QF06_05675 SM00422 helix_turn_helix, mercury resistance QF06_05685 SM00347 helix_turn_helix multiple antibiotic resistance protein QF06_05720 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen QF06_05725 SM00052 Putative diguanylate phosphodiesterase QF06_05725 SM00267 diguanylate cyclase QF06_05775 SM00091 PAS domain QF06_05775 SM00387 Histidine kinase-like ATPases QF06_05775 SM00388 His Kinase A (phosphoacceptor) domain QF06_05815 SM01007 Class II Aldolase and Adducin N-terminal domain QF06_05840 SM00387 Histidine kinase-like ATPases QF06_05840 SM00388 His Kinase A (phosphoacceptor) domain QF06_05845 SM00347 helix_turn_helix multiple antibiotic resistance protein QF06_05860 SM00382 ATPases associated with a variety of cellular activities QF06_05860 SM01086 C-terminal, D2-small domain, of ClpB protein QF06_05895 SM00822 QF06_05895 QF06_05900 SM00257 Lysin motif QF06_05905 SM00257 Lysin motif QF06_05910 SM00636 QF06_05910 QF06_05965 SM00354 helix_turn _helix lactose operon repressor QF06_05970 SM01061 CAT RNA binding domain QF06_06005 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QF06_06005 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QF06_06030 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) QF06_06030 SM00091 PAS domain QF06_06030 SM00387 Histidine kinase-like ATPases QF06_06030 SM00388 His Kinase A (phosphoacceptor) domain QF06_06040 SM00260 Two component signalling adaptor domain QF06_06040 SM00448 cheY-homologous receiver domain QF06_06055 SM00257 Lysin motif QF06_06070 SM00052 Putative diguanylate phosphodiesterase QF06_06165 SM00852 Probable molybdopterin binding domain QF06_06185 SM00382 ATPases associated with a variety of cellular activities QF06_06190 SM00382 ATPases associated with a variety of cellular activities QF06_06205 SM00382 ATPases associated with a variety of cellular activities QF06_06210 SM01066 Carbohydrate binding domain QF06_06215 SM00420 helix_turn_helix, Deoxyribose operon repressor QF06_06215 SM01134 QF06_06215 QF06_06240 SM00382 ATPases associated with a variety of cellular activities QF06_06260 SM00966 SpoVT / AbrB like domain QF06_06265 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) QF06_06265 SM00091 PAS domain QF06_06265 SM00387 Histidine kinase-like ATPases QF06_06265 SM00388 His Kinase A (phosphoacceptor) domain QF06_06285 SM00849 Metallo-beta-lactamase superfamily QF06_06320 SM00861 Transketolase, pyrimidine binding domain QF06_06410 SM00838 Elongation factor G C-terminus QF06_06430 SM00670 Large family of predicted nucleotide-binding domains QF06_06455 SM00878 Biotin carboxylase C-terminal domain QF06_06500 SM00116 Domain in cystathionine beta-synthase and other proteins. QF06_06550 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. QF06_06605 SM00740 QF06_06605 QF06_06610 SM00740 QF06_06610 QF06_06665 SM00842 Cell division protein FtsA QF06_06670 SM00864 Tubulin/FtsZ family, GTPase domain QF06_06670 SM00865 Tubulin/FtsZ family, C-terminal domain QF06_06695 SM00382 ATPases associated with a variety of cellular activities QF06_06730 SM00363 S4 RNA-binding domain QF06_06755 SM00363 S4 RNA-binding domain QF06_06780 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain QF06_06785 SM00851 MGS-like domain QF06_06785 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain QF06_06785 SM01209 QF06_06785 QF06_06800 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family QF06_06850 SM00831 Cation transporter/ATPase, N-terminus QF06_06865 SM00072 Guanylate kinase homologues. QF06_06870 SM01409 QF06_06870 QF06_06880 SM00487 DEAD-like helicases superfamily QF06_06880 SM00490 helicase superfamily c-terminal domain QF06_06905 SM00331 Sigma factor PP2C-like phosphatases QF06_06905 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain QF06_06910 SM00220 Serine/Threonine protein kinases, catalytic domain QF06_06910 SM00740 QF06_06910 QF06_06925 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain QF06_06945 SM01120 QF06_06945 QF06_06945 SM01121 QF06_06945 QF06_06960 SM00487 DEAD-like helicases superfamily QF06_06960 SM00490 helicase superfamily c-terminal domain QF06_06975 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. QF06_06980 SM00822 QF06_06980 QF06_06990 SM00358 Double-stranded RNA binding motif QF06_06990 SM00535 Ribonuclease III family QF06_06995 SM00968 SMC proteins Flexible Hinge Domain QF06_07000 SM00382 ATPases associated with a variety of cellular activities QF06_07000 SM00962 SRP54-type protein, GTPase domain QF06_07000 SM00963 SRP54-type protein, helical bundle domain QF06_07015 SM00382 ATPases associated with a variety of cellular activities QF06_07015 SM00962 SRP54-type protein, GTPase domain QF06_07015 SM00963 SRP54-type protein, helical bundle domain QF06_07075 SM00881 CoA binding domain QF06_07085 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain QF06_07085 SM00437 Bacterial DNA topoisomerase I DNA-binding domain QF06_07085 SM00493 QF06_07085 QF06_07105 SM00382 ATPases associated with a variety of cellular activities QF06_07105 SM01086 C-terminal, D2-small domain, of ClpB protein QF06_07145 SM00382 ATPases associated with a variety of cellular activities QF06_07195 SM00448 cheY-homologous receiver domain QF06_07230 SM00962 SRP54-type protein, GTPase domain QF06_07240 SM00448 cheY-homologous receiver domain QF06_07245 SM00073 Histidine Phosphotransfer domain QF06_07245 SM00260 Two component signalling adaptor domain QF06_07245 SM00387 Histidine kinase-like ATPases QF06_07245 SM01231 QF06_07245 QF06_07250 SM00260 Two component signalling adaptor domain QF06_07320 SM00479 QF06_07320 QF06_07320 SM00481 DNA polymerase alpha chain like domain QF06_07335 SM00382 ATPases associated with a variety of cellular activities QF06_07340 SM01260 QF06_07340 QF06_07350 SM00316 Ribosomal protein S1-like RNA-binding domain QF06_07350 SM00322 K homology RNA-binding domain QF06_07385 SM00904 Riboflavin kinase QF06_07390 SM01387 QF06_07390 QF06_07395 SM00316 Ribosomal protein S1-like RNA-binding domain QF06_07395 SM00322 K homology RNA-binding domain QF06_07425 SM00859 Semialdehyde dehydrogenase, NAD binding domain QF06_07435 SM01130 QF06_07435 QF06_07440 SM00849 Metallo-beta-lactamase superfamily QF06_07455 SM00382 ATPases associated with a variety of cellular activities QF06_07455 SM00843 QF06_07455 QF06_07460 SM00345 helix_turn_helix gluconate operon transcriptional repressor QF06_07460 SM00866 QF06_07460 QF06_07495 SM00530 Helix-turn-helix XRE-family like proteins QF06_07505 SM00852 Probable molybdopterin binding domain QF06_07510 SM00382 ATPases associated with a variety of cellular activities QF06_07520 SM00322 K homology RNA-binding domain QF06_07520 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. QF06_07535 SM00829 Enoylreductase QF06_07545 SM00729 Elongator protein 3, MiaB family, Radical SAM QF06_07560 SM00533 DNA-binding domain of DNA mismatch repair MUTS family QF06_07560 SM00534 ATPase domain of DNA mismatch repair MUTS family QF06_07565 SM00853 MutL C terminal dimerisation domain QF06_07565 SM01340 QF06_07565 QF06_07585 SM00849 Metallo-beta-lactamase superfamily QF06_07595 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. QF06_07600 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. QF06_07605 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. QF06_07615 SM00825 Beta-ketoacyl synthase QF06_07635 SM00822 QF06_07635 QF06_07635 SM00823 Phosphopantetheine attachment site QF06_07635 SM00825 Beta-ketoacyl synthase QF06_07635 SM00826 QF06_07635 QF06_07635 SM01294 QF06_07635 QF06_07640 SM00822 QF06_07640 QF06_07640 SM00823 Phosphopantetheine attachment site QF06_07640 SM00825 Beta-ketoacyl synthase QF06_07640 SM00826 QF06_07640 QF06_07640 SM01294 QF06_07640 QF06_07645 SM00822 QF06_07645 QF06_07645 SM00823 Phosphopantetheine attachment site QF06_07645 SM00825 Beta-ketoacyl synthase QF06_07645 SM00826 QF06_07645 QF06_07645 SM01294 QF06_07645 QF06_07650 SM00822 QF06_07650 QF06_07650 SM00823 Phosphopantetheine attachment site QF06_07650 SM00825 Beta-ketoacyl synthase QF06_07650 SM00826 QF06_07650 QF06_07650 SM01294 QF06_07650 QF06_07655 SM00823 Phosphopantetheine attachment site QF06_07655 SM00825 Beta-ketoacyl synthase QF06_07655 SM01294 QF06_07655 QF06_07670 SM00849 Metallo-beta-lactamase superfamily QF06_07755 SM00646 QF06_07755 QF06_07760 SM00382 ATPases associated with a variety of cellular activities QF06_07775 SM00422 helix_turn_helix, mercury resistance QF06_07780 SM01230 QF06_07780 QF06_07805 SM00860 SMI1 / KNR4 family QF06_07870 SM01005 Alanine racemase, C-terminal domain QF06_07995 SM00257 Lysin motif QF06_08000 SM00857 Resolvase, N terminal domain QF06_08010 SM00861 Transketolase, pyrimidine binding domain QF06_08035 SM00448 cheY-homologous receiver domain QF06_08105 SM01207 QF06_08105 QF06_08110 SM00881 CoA binding domain QF06_08115 SM00387 Histidine kinase-like ATPases QF06_08115 SM00433 TopoisomeraseII QF06_08120 SM00434 DNA Topoisomerase IV QF06_08135 SM01067 Cellulose binding domain QF06_08150 SM00606 Cellulose Binding Domain Type IV QF06_08195 SM00878 Biotin carboxylase C-terminal domain QF06_08225 SM00823 Phosphopantetheine attachment site QF06_08225 SM00824 Thioesterase QF06_08235 SM00823 Phosphopantetheine attachment site QF06_08240 SM00823 Phosphopantetheine attachment site QF06_08245 SM00823 Phosphopantetheine attachment site QF06_08295 SM00829 Enoylreductase QF06_08315 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase QF06_08330 SM00822 QF06_08330 QF06_08360 SM00382 ATPases associated with a variety of cellular activities QF06_08365 SM00347 helix_turn_helix multiple antibiotic resistance protein QF06_08385 SM00926 Molybdopterin oxidoreductase Fe4S4 domain QF06_08410 SM00354 helix_turn _helix lactose operon repressor QF06_08430 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QF06_08430 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QF06_08450 SM00656 QF06_08450 QF06_08465 SM00835 Cupin QF06_08495 SM00530 Helix-turn-helix XRE-family like proteins QF06_08605 SM00028 Tetratricopeptide repeats QF06_08625 SM00860 SMI1 / KNR4 family QF06_08640 SM00342 helix_turn_helix, arabinose operon control protein QF06_08655 SM00849 Metallo-beta-lactamase superfamily QF06_08660 SM00871 Bacterial transcription activator, effector binding domain QF06_08675 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor QF06_08715 SM00421 helix_turn_helix, Lux Regulon QF06_08715 SM00448 cheY-homologous receiver domain QF06_08720 SM00257 Lysin motif QF06_08725 SM00341 Helicase and RNase D C-terminal QF06_08725 SM00487 DEAD-like helicases superfamily QF06_08725 SM00490 helicase superfamily c-terminal domain QF06_08725 SM00956 QF06_08725 QF06_08810 SM00861 Transketolase, pyrimidine binding domain QF06_08815 SM00327 von Willebrand factor (vWF) type A domain QF06_08820 SM00382 ATPases associated with a variety of cellular activities QF06_08830 SM00257 Lysin motif QF06_08925 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. QF06_08925 SM00245 tail specific protease QF06_08955 SM00014 Acid phosphatase homologues QF06_08995 SM00882 Coenzyme A transferase QF06_09000 SM00882 Coenzyme A transferase QF06_09060 SM00347 helix_turn_helix multiple antibiotic resistance protein QF06_09100 SM00382 ATPases associated with a variety of cellular activities QF06_09145 SM00567 E-Z type HEAT repeats QF06_09145 SM00932 Scaffold protein Nfu/NifU N terminal QF06_09150 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. QF06_09170 SM00357 Cold shock protein domain QF06_09210 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs QF06_09210 SM00475 5'-3' exonuclease QF06_09265 SM00354 helix_turn _helix lactose operon repressor QF06_09280 SM00491 QF06_09280 QF06_09290 SM00981 QF06_09290 QF06_09310 SM00487 DEAD-like helicases superfamily QF06_09310 SM00490 helicase superfamily c-terminal domain QF06_09370 SM00478 endonuclease III QF06_09370 SM00525 QF06_09370 QF06_09395 SM00479 QF06_09395 QF06_09395 SM00487 DEAD-like helicases superfamily QF06_09395 SM00491 QF06_09395 QF06_09435 SM00851 MGS-like domain QF06_09485 SM00914 QF06_09485 QF06_09490 SM00028 Tetratricopeptide repeats QF06_09555 SM00138 Methyltransferase, chemotaxis proteins QF06_09560 SM00562 QF06_09560 QF06_09590 SM00411 bacterial (prokaryotic) histone like domain QF06_09635 SM01240 QF06_09635 QF06_09640 SM00316 Ribosomal protein S1-like RNA-binding domain QF06_09675 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase QF06_09695 SM00257 Lysin motif QF06_09705 SM00487 DEAD-like helicases superfamily QF06_09705 SM00490 helicase superfamily c-terminal domain QF06_09745 SM00091 PAS domain QF06_09745 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QF06_09745 SM00387 Histidine kinase-like ATPases QF06_09745 SM00388 His Kinase A (phosphoacceptor) domain QF06_09750 SM00448 cheY-homologous receiver domain QF06_09750 SM00862 Transcriptional regulatory protein, C terminal QF06_09770 SM00363 S4 RNA-binding domain QF06_09785 SM00936 Penicillin-binding protein 5, C-terminal domain QF06_09910 SM00387 Histidine kinase-like ATPases QF06_09920 SM00936 Penicillin-binding protein 5, C-terminal domain QF06_09960 SM00919 Malic enzyme, NAD binding domain QF06_09960 SM01274 QF06_09960 QF06_09975 SM00870 QF06_09975 QF06_09980 SM00530 Helix-turn-helix XRE-family like proteins QF06_10080 SM00849 Metallo-beta-lactamase superfamily QF06_10110 SM00849 Metallo-beta-lactamase superfamily QF06_10120 SM01350 QF06_10120 QF06_10170 SM00382 ATPases associated with a variety of cellular activities QF06_10180 SM00062 Bacterial periplasmic substrate-binding proteins QF06_10180 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. QF06_10190 SM00046 Diacylglycerol kinase catalytic domain (presumed) QF06_10200 SM00422 helix_turn_helix, mercury resistance QF06_10210 SM00861 Transketolase, pyrimidine binding domain QF06_10230 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase QF06_10240 SM00091 PAS domain QF06_10240 SM00382 ATPases associated with a variety of cellular activities QF06_10285 SM00646 QF06_10285 QF06_10300 SM00448 cheY-homologous receiver domain QF06_10305 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. QF06_10320 SM00363 S4 RNA-binding domain QF06_10325 SM00861 Transketolase, pyrimidine binding domain QF06_10360 SM00878 Biotin carboxylase C-terminal domain QF06_10405 SM00382 ATPases associated with a variety of cellular activities QF06_10415 SM00841 Elongation factor P, C-terminal QF06_10415 SM01185 QF06_10415 QF06_10450 SM00529 Helix-turn-helix diphteria tox regulatory element QF06_10460 SM00450 Rhodanese Homology Domain QF06_10480 SM00487 DEAD-like helicases superfamily QF06_10480 SM00490 helicase superfamily c-terminal domain QF06_10495 SM00530 Helix-turn-helix XRE-family like proteins QF06_10555 SM00382 ATPases associated with a variety of cellular activities QF06_10565 SM01091 Transporter associated domain QF06_10590 SM00849 Metallo-beta-lactamase superfamily QF06_10610 SM00631 QF06_10610 QF06_10630 SM00028 Tetratricopeptide repeats QF06_10665 SM00382 ATPases associated with a variety of cellular activities QF06_10670 SM00382 ATPases associated with a variety of cellular activities QF06_10715 SM00257 Lysin motif QF06_10750 SM00518 AP endonuclease family 2 QF06_10755 SM00487 DEAD-like helicases superfamily QF06_10755 SM00490 helicase superfamily c-terminal domain QF06_10790 SM00400 zinc finger QF06_10790 SM00493 QF06_10790 QF06_10805 SM00116 Domain in cystathionine beta-synthase and other proteins. QF06_10845 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. QF06_10895 SM00729 Elongator protein 3, MiaB family, Radical SAM QF06_10910 SM00271 DnaJ molecular chaperone homology domain QF06_10930 SM00729 Elongator protein 3, MiaB family, Radical SAM QF06_10970 SM00849 Metallo-beta-lactamase superfamily QF06_10980 SM00278 Helix-hairpin-helix DNA-binding motif class 1 QF06_11000 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. QF06_11010 SM01103 QF06_11010 QF06_11040 SM00644 QF06_11040 QF06_11050 SM01350 QF06_11050 QF06_11070 SM00857 Resolvase, N terminal domain QF06_11075 SM00226 Low molecular weight phosphatase family QF06_11090 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor QF06_11100 SM00028 Tetratricopeptide repeats QF06_11130 SM00644 QF06_11130 QF06_11190 SM00257 Lysin motif QF06_11310 SM00382 ATPases associated with a variety of cellular activities QF06_11340 SM00530 Helix-turn-helix XRE-family like proteins QF06_11345 SM00530 Helix-turn-helix XRE-family like proteins QF06_11350 SM00530 Helix-turn-helix XRE-family like proteins QF06_11375 SM00388 His Kinase A (phosphoacceptor) domain QF06_11380 SM00448 cheY-homologous receiver domain QF06_11380 SM00862 Transcriptional regulatory protein, C terminal QF06_11415 SM00450 Rhodanese Homology Domain QF06_11415 SM00849 Metallo-beta-lactamase superfamily QF06_11425 SM00450 Rhodanese Homology Domain QF06_11445 SM00422 helix_turn_helix, mercury resistance QF06_11460 SM01091 Transporter associated domain QF06_11515 SM00344 helix_turn_helix ASNC type QF06_11565 SM00345 helix_turn_helix gluconate operon transcriptional repressor QF06_11565 SM00895 QF06_11565 QF06_11575 SM00822 QF06_11575 QF06_11580 SM00861 Transketolase, pyrimidine binding domain QF06_11595 SM00347 helix_turn_helix multiple antibiotic resistance protein QF06_11645 SM00287 Bacterial SH3 domain homologues QF06_11685 SM00422 helix_turn_helix, mercury resistance QF06_11695 SM00829 Enoylreductase QF06_11705 SM00640 Glycosyl hydrolases family 32 QF06_11730 SM00382 ATPases associated with a variety of cellular activities QF06_11800 SM00926 Molybdopterin oxidoreductase Fe4S4 domain QF06_11800 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region QF06_11830 SM00650 Ribosomal RNA adenine dimethylases QF06_11885 SM00732 Likely ribonuclease with RNase H fold. QF06_11895 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain QF06_11905 SM00382 ATPases associated with a variety of cellular activities QF06_11910 SM00062 Bacterial periplasmic substrate-binding proteins QF06_11910 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. QF06_11935 SM00382 ATPases associated with a variety of cellular activities QF06_11940 SM00028 Tetratricopeptide repeats QF06_11960 SM00382 ATPases associated with a variety of cellular activities QF06_11980 SM00287 Bacterial SH3 domain homologues QF06_11980 SM00646 QF06_11980 QF06_11990 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. QF06_11990 SM00954 Region found in RelA / SpoT proteins QF06_12040 SM01323 QF06_12040 QF06_12060 SM00382 ATPases associated with a variety of cellular activities QF06_12065 SM00278 Helix-hairpin-helix DNA-binding motif class 1 QF06_12115 SM00257 Lysin motif QF06_12160 SM01317 QF06_12160 QF06_12255 SM00257 Lysin motif QF06_12265 SM01004 Delta-aminolevulinic acid dehydratase QF06_12300 SM00382 ATPases associated with a variety of cellular activities QF06_12300 SM00464 Found in ATP-dependent protease La (LON) QF06_12305 SM00382 ATPases associated with a variety of cellular activities QF06_12310 SM00382 ATPases associated with a variety of cellular activities QF06_12310 SM00994 ClpX C4-type zinc finger QF06_12310 SM01086 C-terminal, D2-small domain, of ClpB protein QF06_12335 SM01329 QF06_12335 QF06_12340 SM00917 LeuA allosteric (dimerisation) domain QF06_12395 SM00909 Sporulation and spore germination QF06_12405 SM00347 helix_turn_helix multiple antibiotic resistance protein QF06_12410 SM00421 helix_turn_helix, Lux Regulon QF06_12445 SM00465 GIY-YIG type nucleases (URI domain) QF06_12455 SM00813 Alpha-L-arabinofuranosidase C-terminus QF06_12460 SM00893 Electron transfer flavoprotein domain QF06_12465 SM00893 Electron transfer flavoprotein domain QF06_12490 SM00463 Small MutS-related domain QF06_12490 SM00533 DNA-binding domain of DNA mismatch repair MUTS family QF06_12490 SM00534 ATPase domain of DNA mismatch repair MUTS family QF06_12495 SM00278 Helix-hairpin-helix DNA-binding motif class 1 QF06_12495 SM00481 DNA polymerase alpha chain like domain QF06_12495 SM00483 DNA polymerase X family QF06_12515 SM00873 B3/4 domain QF06_12515 SM00874 tRNA synthetase B5 domain QF06_12515 SM00896 Ferredoxin-fold anticodon binding domain QF06_12530 SM00967 RNA 2'-O ribose methyltransferase substrate binding QF06_12565 SM00813 Alpha-L-arabinofuranosidase C-terminus QF06_12595 SM01007 Class II Aldolase and Adducin N-terminal domain QF06_12660 SM00448 cheY-homologous receiver domain QF06_12660 SM00850 LytTr DNA-binding domain QF06_12665 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. QF06_12665 SM00387 Histidine kinase-like ATPases QF06_12675 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain QF06_12690 SM00382 ATPases associated with a variety of cellular activities QF06_12710 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain QF06_12740 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain QF06_12740 SM01232 QF06_12740 QF06_12745 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs QF06_12745 SM00474 3'-5' exonuclease QF06_12745 SM00475 5'-3' exonuclease QF06_12745 SM00482 DNA polymerase A domain QF06_12750 SM00091 PAS domain QF06_12750 SM00387 Histidine kinase-like ATPases QF06_12750 SM00388 His Kinase A (phosphoacceptor) domain QF06_12755 SM00448 cheY-homologous receiver domain QF06_12755 SM00862 Transcriptional regulatory protein, C terminal QF06_12765 SM01329 QF06_12765 QF06_12810 SM00919 Malic enzyme, NAD binding domain QF06_12810 SM01274 QF06_12810 QF06_12815 SM00481 DNA polymerase alpha chain like domain QF06_12845 SM00116 Domain in cystathionine beta-synthase and other proteins. QF06_12860 SM00904 Riboflavin kinase QF06_12880 SM00382 ATPases associated with a variety of cellular activities QF06_12895 SM00062 Bacterial periplasmic substrate-binding proteins QF06_12900 SM00062 Bacterial periplasmic substrate-binding proteins QF06_12915 SM00849 Metallo-beta-lactamase superfamily QF06_12935 SM00852 Probable molybdopterin binding domain QF06_12995 SM00981 QF06_12995 QF06_13025 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. QF06_13030 SM00267 diguanylate cyclase QF06_13035 SM00363 S4 RNA-binding domain QF06_13035 SM01390 QF06_13035 QF06_13040 SM00363 S4 RNA-binding domain QF06_13055 SM00116 Domain in cystathionine beta-synthase and other proteins. QF06_13075 SM00354 helix_turn _helix lactose operon repressor QF06_13080 SM00830 Chorismate mutase type II QF06_13105 SM00382 ATPases associated with a variety of cellular activities QF06_13105 SM00843 QF06_13105 QF06_13140 SM00919 Malic enzyme, NAD binding domain QF06_13140 SM01274 QF06_13140 QF06_13145 SM00849 Metallo-beta-lactamase superfamily QF06_13165 SM00642 Alpha-amylase domain QF06_13170 SM00046 Diacylglycerol kinase catalytic domain (presumed) QF06_13205 SM00382 ATPases associated with a variety of cellular activities QF06_13210 SM00420 helix_turn_helix, Deoxyribose operon repressor QF06_13215 SM00363 S4 RNA-binding domain QF06_13265 SM00342 helix_turn_helix, arabinose operon control protein QF06_13290 SM00729 Elongator protein 3, MiaB family, Radical SAM QF06_13290 SM00876 Biotin and Thiamin Synthesis associated domain QF06_13320 SM00354 helix_turn _helix lactose operon repressor QF06_13345 SM00450 Rhodanese Homology Domain QF06_13360 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) QF06_13360 SM00091 PAS domain QF06_13380 SM00382 ATPases associated with a variety of cellular activities QF06_13385 SM00387 Histidine kinase-like ATPases QF06_13390 SM00448 cheY-homologous receiver domain QF06_13390 SM00862 Transcriptional regulatory protein, C terminal QF06_13400 SM00382 ATPases associated with a variety of cellular activities QF06_13415 SM00382 ATPases associated with a variety of cellular activities QF06_13420 SM00345 helix_turn_helix gluconate operon transcriptional repressor QF06_13430 SM00729 Elongator protein 3, MiaB family, Radical SAM QF06_13490 SM00382 ATPases associated with a variety of cellular activities QF06_13530 SM01234 QF06_13530 QF06_13535 SM00947 Carbonic anhydrase QF06_13565 SM00382 ATPases associated with a variety of cellular activities QF06_13575 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain QF06_13615 SM00984 UDP binding domain QF06_13675 SM00642 Alpha-amylase domain QF06_13810 SM00244 prohibitin homologues QF06_13865 SM00047 Lysozyme subfamily 2 QF06_13915 SM00420 helix_turn_helix, Deoxyribose operon repressor QF06_13915 SM01134 QF06_13915 QF06_13920 SM01007 Class II Aldolase and Adducin N-terminal domain QF06_13925 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QF06_13925 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QF06_13925 SM00319 Homologues of the ligand binding domain of Tar QF06_13930 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QF06_13930 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QF06_13930 SM00319 Homologues of the ligand binding domain of Tar QF06_13935 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QF06_13935 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QF06_13935 SM00319 Homologues of the ligand binding domain of Tar QF06_13940 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QF06_13940 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QF06_13940 SM00319 Homologues of the ligand binding domain of Tar QF06_13960 SM00642 Alpha-amylase domain QF06_13965 SM01091 Transporter associated domain QF06_14020 SM00316 Ribosomal protein S1-like RNA-binding domain QF06_14030 SM00344 helix_turn_helix ASNC type QF06_14050 SM00387 Histidine kinase-like ATPases QF06_14050 SM00388 His Kinase A (phosphoacceptor) domain QF06_14055 SM01298 QF06_14055 QF06_14060 SM00479 QF06_14060 QF06_14090 SM00091 PAS domain QF06_14090 SM00387 Histidine kinase-like ATPases QF06_14095 SM00448 cheY-homologous receiver domain QF06_14105 SM00382 ATPases associated with a variety of cellular activities QF06_14170 SM00421 helix_turn_helix, Lux Regulon QF06_14170 SM00448 cheY-homologous receiver domain QF06_14175 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. QF06_14175 SM00387 Histidine kinase-like ATPases QF06_14245 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. QF06_14290 SM01002 Alanine dehydrogenase/PNT, C-terminal domain QF06_14290 SM01003 Alanine dehydrogenase/PNT, N-terminal domain QF06_14300 SM00923 MbtH-like protein QF06_14305 SM00823 Phosphopantetheine attachment site QF06_14305 SM00824 Thioesterase QF06_14380 SM01240 QF06_14380 QF06_14480 SM00729 Elongator protein 3, MiaB family, Radical SAM QF06_14560 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain QF06_14595 SM00382 ATPases associated with a variety of cellular activities QF06_14600 SM00345 helix_turn_helix gluconate operon transcriptional repressor QF06_14600 SM00866 QF06_14600 QF06_14630 SM00465 GIY-YIG type nucleases (URI domain) QF06_14655 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor QF06_14680 SM00382 ATPases associated with a variety of cellular activities QF06_14700 SM00382 ATPases associated with a variety of cellular activities QF06_14700 SM00930 QF06_14700 QF06_14715 SM00493 QF06_14715 QF06_14765 SM00347 helix_turn_helix multiple antibiotic resistance protein QF06_14800 SM00382 ATPases associated with a variety of cellular activities QF06_14825 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. QF06_14830 SM00448 cheY-homologous receiver domain QF06_14830 SM00862 Transcriptional regulatory protein, C terminal QF06_14835 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QF06_14835 SM00387 Histidine kinase-like ATPases QF06_14835 SM00388 His Kinase A (phosphoacceptor) domain QF06_14870 SM00421 helix_turn_helix, Lux Regulon QF06_14870 SM00448 cheY-homologous receiver domain QF06_14875 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QF06_14875 SM00387 Histidine kinase-like ATPases QF06_14910 SM00382 ATPases associated with a variety of cellular activities QF06_14935 SM00387 Histidine kinase-like ATPases QF06_14935 SM00388 His Kinase A (phosphoacceptor) domain QF06_14940 SM00448 cheY-homologous receiver domain QF06_14940 SM00862 Transcriptional regulatory protein, C terminal QF06_14955 SM00835 Cupin QF06_14970 SM00382 ATPases associated with a variety of cellular activities QF06_14980 SM00382 ATPases associated with a variety of cellular activities QF06_15160 SM00316 Ribosomal protein S1-like RNA-binding domain QF06_15160 SM00357 Cold shock protein domain QF06_15160 SM00955 QF06_15160 QF06_15180 SM00530 Helix-turn-helix XRE-family like proteins QF06_15185 SM00530 Helix-turn-helix XRE-family like proteins QF06_15190 SM00530 Helix-turn-helix XRE-family like proteins QF06_15200 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QF06_15200 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QF06_15205 SM00387 Histidine kinase-like ATPases QF06_15205 SM00388 His Kinase A (phosphoacceptor) domain QF06_15210 SM00448 cheY-homologous receiver domain QF06_15210 SM00862 Transcriptional regulatory protein, C terminal QF06_15225 SM00382 ATPases associated with a variety of cellular activities QF06_15240 SM01260 QF06_15240 QF06_15245 SM00382 ATPases associated with a variety of cellular activities QF06_15270 SM00116 Domain in cystathionine beta-synthase and other proteins. QF06_15270 SM00382 ATPases associated with a variety of cellular activities QF06_15295 SM00116 Domain in cystathionine beta-synthase and other proteins. QF06_15295 SM00382 ATPases associated with a variety of cellular activities QF06_15330 SM01192 QF06_15330 QF06_15330 SM01193 QF06_15330 QF06_15350 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain QF06_15365 SM00345 helix_turn_helix gluconate operon transcriptional repressor QF06_15390 SM00636 QF06_15390 QF06_15410 SM00421 helix_turn_helix, Lux Regulon QF06_15410 SM00448 cheY-homologous receiver domain QF06_15425 SM00382 ATPases associated with a variety of cellular activities QF06_15435 SM00331 Sigma factor PP2C-like phosphatases QF06_15465 SM00354 helix_turn _helix lactose operon repressor QF06_15470 SM00345 helix_turn_helix gluconate operon transcriptional repressor QF06_15470 SM00895 QF06_15470 QF06_15565 SM00530 Helix-turn-helix XRE-family like proteins QF06_15605 SM00640 Glycosyl hydrolases family 32 QF06_15650 SM00642 Alpha-amylase domain QF06_15680 SM00642 Alpha-amylase domain QF06_15685 SM00354 helix_turn _helix lactose operon repressor QF06_15705 SM00947 Carbonic anhydrase QF06_15720 SM00382 ATPases associated with a variety of cellular activities QF06_15725 SM00387 Histidine kinase-like ATPases QF06_15730 SM00448 cheY-homologous receiver domain QF06_15730 SM00862 Transcriptional regulatory protein, C terminal QF06_15790 SM00028 Tetratricopeptide repeats QF06_15795 SM00382 ATPases associated with a variety of cellular activities QF06_15900 SM00345 helix_turn_helix gluconate operon transcriptional repressor QF06_15900 SM00866 QF06_15900 QF06_15910 SM00347 helix_turn_helix multiple antibiotic resistance protein QF06_15925 SM00347 helix_turn_helix multiple antibiotic resistance protein QF06_15965 SM00382 ATPases associated with a variety of cellular activities QF06_15970 SM00487 DEAD-like helicases superfamily QF06_15970 SM00490 helicase superfamily c-terminal domain QF06_15995 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. QF06_16005 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. QF06_16005 SM00245 tail specific protease QF06_16015 SM00382 ATPases associated with a variety of cellular activities QF06_16030 SM00937 QF06_16030 QF06_16035 SM00957 SecA DEAD-like domain QF06_16035 SM00958 SecA preprotein cross-linking domain QF06_16125 SM00487 DEAD-like helicases superfamily QF06_16125 SM00490 helicase superfamily c-terminal domain QF06_16135 SM00421 helix_turn_helix, Lux Regulon QF06_16135 SM00448 cheY-homologous receiver domain QF06_16140 SM00387 Histidine kinase-like ATPases QF06_16180 SM00984 UDP binding domain QF06_16205 SM00646 QF06_16205 QF06_16250 SM00382 ATPases associated with a variety of cellular activities QF06_16310 SM00047 Lysozyme subfamily 2 QF06_16310 SM00287 Bacterial SH3 domain homologues QF06_16355 SM00854 Bacterial capsule synthesis protein PGA_cap QF06_16370 SM00354 helix_turn _helix lactose operon repressor QF06_16385 SM00382 ATPases associated with a variety of cellular activities QF06_16400 SM00287 Bacterial SH3 domain homologues QF06_16455 SM00903 Flavin reductase like domain QF06_16470 SM00344 helix_turn_helix ASNC type QF06_16515 SM00984 UDP binding domain QF06_16540 SM00487 DEAD-like helicases superfamily QF06_16540 SM00490 helicase superfamily c-terminal domain QF06_16550 SM00420 helix_turn_helix, Deoxyribose operon repressor QF06_16550 SM01134 QF06_16550 QF06_16580 SM00448 cheY-homologous receiver domain QF06_16580 SM00862 Transcriptional regulatory protein, C terminal QF06_16585 SM00387 Histidine kinase-like ATPases QF06_16585 SM00388 His Kinase A (phosphoacceptor) domain QF06_16585 SM00448 cheY-homologous receiver domain QF06_16600 SM00028 Tetratricopeptide repeats QF06_16625 SM00347 helix_turn_helix multiple antibiotic resistance protein QF06_16635 SM00710 Parallel beta-helix repeats QF06_16635 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses QF06_16665 SM00938 Nitrogen regulatory protein P-II QF06_16670 SM00014 Acid phosphatase homologues QF06_16700 SM00155 Phospholipase D. Active site motifs. QF06_16705 SM00422 helix_turn_helix, mercury resistance QF06_16755 SM00028 Tetratricopeptide repeats QF06_16760 SM00729 Elongator protein 3, MiaB family, Radical SAM QF06_16770 SM00327 von Willebrand factor (vWF) type A domain QF06_16780 SM00327 von Willebrand factor (vWF) type A domain QF06_16815 SM00382 ATPases associated with a variety of cellular activities QF06_16875 SM00226 Low molecular weight phosphatase family QF06_16915 SM00937 QF06_16915 QF06_16935 SM00919 Malic enzyme, NAD binding domain QF06_16935 SM01274 QF06_16935 QF06_16950 SM00357 Cold shock protein domain QF06_16950 SM00382 ATPases associated with a variety of cellular activities QF06_16950 SM00959 Rho termination factor, N-terminal domain QF06_16975 SM00448 cheY-homologous receiver domain QF06_17005 SM00155 Phospholipase D. Active site motifs. QF06_17025 SM00382 ATPases associated with a variety of cellular activities QF06_17030 SM00155 Phospholipase D. Active site motifs. QF06_17050 SM00926 Molybdopterin oxidoreductase Fe4S4 domain QF06_17065 SM00100 Cyclic nucleotide-monophosphate binding domain QF06_17065 SM00419 helix_turn_helix, cAMP Regulatory protein QF06_17075 SM00836 DALR anticodon binding domain QF06_17075 SM01016 Arginyl tRNA synthetase N terminal dom QF06_17090 SM00729 Elongator protein 3, MiaB family, Radical SAM QF06_17140 SM00028 Tetratricopeptide repeats QF06_17170 SM00382 ATPases associated with a variety of cellular activities QF06_17215 SM00347 helix_turn_helix multiple antibiotic resistance protein QF06_17220 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain QF06_17240 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. QF06_17335 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase QF06_17375 SM00858 QF06_17375 QF06_17425 SM00986 Uracil DNA glycosylase superfamily QF06_17425 SM00987 UreE urease accessory protein, C-terminal domain QF06_17460 SM00640 Glycosyl hydrolases family 32 QF06_17475 SM01061 CAT RNA binding domain QF06_17625 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase QF06_17660 SM01061 CAT RNA binding domain QF06_17675 SM00347 helix_turn_helix multiple antibiotic resistance protein QF06_17680 SM00363 S4 RNA-binding domain QF06_17690 SM00530 Helix-turn-helix XRE-family like proteins QF06_17705 SM00954 Region found in RelA / SpoT proteins QF06_17780 SM01060 QF06_17780 QF06_17795 SM00382 ATPases associated with a variety of cellular activities QF06_17830 SM00382 ATPases associated with a variety of cellular activities QF06_17835 SM00382 ATPases associated with a variety of cellular activities QF06_17880 SM00382 ATPases associated with a variety of cellular activities QF06_17930 SM00421 helix_turn_helix, Lux Regulon QF06_17930 SM00448 cheY-homologous receiver domain QF06_17960 SM00882 Coenzyme A transferase QF06_17965 SM00882 Coenzyme A transferase QF06_17995 SM01060 QF06_17995 QF06_18010 SM01061 CAT RNA binding domain QF06_18025 SM00487 DEAD-like helicases superfamily QF06_18025 SM00490 helicase superfamily c-terminal domain QF06_18170 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain QF06_18180 SM01133 QF06_18180 QF06_18210 SM00382 ATPases associated with a variety of cellular activities QF06_18220 SM00062 Bacterial periplasmic substrate-binding proteins QF06_18285 SM00382 ATPases associated with a variety of cellular activities QF06_18290 SM00387 Histidine kinase-like ATPases QF06_18295 SM00448 cheY-homologous receiver domain QF06_18295 SM00862 Transcriptional regulatory protein, C terminal QF06_18350 SM00420 helix_turn_helix, Deoxyribose operon repressor QF06_18350 SM01134 QF06_18350 QF06_18375 SM00387 Histidine kinase-like ATPases QF06_18400 SM00382 ATPases associated with a variety of cellular activities QF06_18425 SM00564 beta-propeller repeat QF06_18460 SM00347 helix_turn_helix multiple antibiotic resistance protein QF06_18485 SM00345 helix_turn_helix gluconate operon transcriptional repressor QF06_18485 SM00895 QF06_18485 QF06_18500 SM01350 QF06_18500 QF06_18530 SM00345 helix_turn_helix gluconate operon transcriptional repressor QF06_18530 SM00866 QF06_18530 QF06_18545 SM00382 ATPases associated with a variety of cellular activities QF06_18640 SM00091 PAS domain QF06_18640 SM00382 ATPases associated with a variety of cellular activities QF06_18645 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. QF06_18650 SM00849 Metallo-beta-lactamase superfamily QF06_18665 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) QF06_18665 SM00091 PAS domain QF06_18665 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QF06_18665 SM00387 Histidine kinase-like ATPases QF06_18665 SM00388 His Kinase A (phosphoacceptor) domain QF06_18670 SM00448 cheY-homologous receiver domain QF06_18670 SM00862 Transcriptional regulatory protein, C terminal QF06_18695 SM00788 Adenylosuccinate synthetase QF06_18705 SM00382 ATPases associated with a variety of cellular activities QF06_18735 SM00267 diguanylate cyclase QF06_18760 SM01131 QF06_18760 QF06_18780 SM00422 helix_turn_helix, mercury resistance QF06_18795 SM00849 Metallo-beta-lactamase superfamily QF06_18800 SM00347 helix_turn_helix multiple antibiotic resistance protein QF06_18835 SM00422 helix_turn_helix, mercury resistance QF06_18860 SM01266 QF06_18860 QF06_18870 SM00354 helix_turn _helix lactose operon repressor QF06_18900 SM00926 Molybdopterin oxidoreductase Fe4S4 domain QF06_18920 SM00470 ParB-like nuclease domain QF06_18935 SM00470 ParB-like nuclease domain QF06_18945 SM01228 QF06_18945 QF06_18955 SM00322 K homology RNA-binding domain QF06_18955 SM00393 Putative single-stranded nucleic acids-binding domain QF06_18955 SM01245 QF06_18955 QF06_18975 SM00382 ATPases associated with a variety of cellular activities QF06_18975 SM00760 Bacterial dnaA protein helix-turn-helix domain QF06_18980 SM00480 DNA polymerase III beta subunit QF06_19000 SM00387 Histidine kinase-like ATPases QF06_19000 SM00433 TopoisomeraseII QF06_19005 SM00434 DNA Topoisomerase IV QF06_19030 SM00116 Domain in cystathionine beta-synthase and other proteins. QF06_19030 SM01240 QF06_19030 QF06_19035 SM00936 Penicillin-binding protein 5, C-terminal domain QF06_19070 SM00257 Lysin motif QF06_19070 SM00636 QF06_19070 QF06_19085 SM00382 ATPases associated with a variety of cellular activities QF06_19095 SM00493 QF06_19095 QF06_19180 SM00465 GIY-YIG type nucleases (URI domain) QF06_19190 SM00966 SpoVT / AbrB like domain QF06_19205 SM01208 QF06_19205 QF06_19210 SM00493 QF06_19210 QF06_19215 SM00650 Ribosomal RNA adenine dimethylases QF06_19260 SM01400 QF06_19260 QF06_19280 SM00487 DEAD-like helicases superfamily QF06_19280 SM00490 helicase superfamily c-terminal domain QF06_19280 SM00982 QF06_19280 QF06_19280 SM01058 CarD-like/TRCF domain QF06_19285 SM00966 SpoVT / AbrB like domain QF06_19300 SM00363 S4 RNA-binding domain QF06_19320 SM00316 Ribosomal protein S1-like RNA-binding domain QF06_19335 SM00331 Sigma factor PP2C-like phosphatases QF06_19335 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain QF06_19345 SM00220 Serine/Threonine protein kinases, catalytic domain QF06_19350 SM00977 TilS substrate C-terminal domain QF06_19360 SM00382 ATPases associated with a variety of cellular activities QF06_19405 SM00905 Dihydroneopterin aldolase QF06_19415 SM00530 Helix-turn-helix XRE-family like proteins QF06_19505 SM00382 ATPases associated with a variety of cellular activities QF06_19505 SM01086 C-terminal, D2-small domain, of ClpB protein QF06_19510 SM00382 ATPases associated with a variety of cellular activities QF06_19520 SM00670 Large family of predicted nucleotide-binding domains QF06_19550 SM00840 QF06_19550 QF06_19555 SM00535 Ribonuclease III family QF06_19560 SM00967 RNA 2'-O ribose methyltransferase substrate binding QF06_19580 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. QF06_19580 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. QF06_19585 SM00649 Ribosomal protein L11/L12 QF06_19615 SM00663 RNA polymerase I subunit A N-terminus QF06_19635 SM00838 Elongation factor G C-terminus QF06_19635 SM00889 Elongation factor G, domain IV QF06_19650 SM01403 QF06_19650 QF06_19670 SM01382 QF06_19670 QF06_19670 SM01383 QF06_19670 QF06_19685 SM00322 K homology RNA-binding domain QF06_19705 SM01374 QF06_19705 QF06_19710 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. QF06_19775 SM00316 Ribosomal protein S1-like RNA-binding domain QF06_19795 SM00662 RNA polymerases D QF06_19805 SM00382 ATPases associated with a variety of cellular activities QF06_19810 SM00382 ATPases associated with a variety of cellular activities QF06_19845 SM00646 QF06_19845 QF06_19860 SM01251 QF06_19860 QF06_20005 SM00342 helix_turn_helix, arabinose operon control protein QF06_20105 SM00478 endonuclease III QF06_20110 SM00342 helix_turn_helix, arabinose operon control protein QF06_20145 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor QF06_20400 SM00028 Tetratricopeptide repeats QF06_20580 SM00974 QF06_20580 QF06_20610 SM00481 DNA polymerase alpha chain like domain QF06_20630 SM00072 Guanylate kinase homologues. QF06_20675 SM00433 TopoisomeraseII