locus-tag class description KS08_00005 PF11638 DnaA N-terminal domain KS08_00005 PF08299 Bacterial dnaA protein helix-turn-helix KS08_00005 PF00308 Bacterial dnaA protein KS08_00010 PF02767 DNA polymerase III beta subunit, central domain KS08_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain KS08_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain KS08_00020 PF02463 RecF/RecN/SMC N terminal domain KS08_00025 PF04025 Domain of unknown function (DUF370) KS08_00030 PF00204 DNA gyrase B KS08_00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS08_00030 PF01751 Toprim domain KS08_00030 PF00986 DNA gyrase B subunit, carboxyl terminus KS08_00035 PF00521 DNA gyrase/topoisomerase IV, subunit A KS08_00035 PF03989 DNA gyrase C-terminal domain, beta-propeller KS08_00065 PF14175 YaaC-like Protein KS08_00070 PF00478 IMP dehydrogenase / GMP reductase domain KS08_00070 PF00571 CBS domain KS08_00075 PF00768 D-alanyl-D-alanine carboxypeptidase KS08_00075 PF07943 Penicillin-binding protein 5, C-terminal domain KS08_00080 PF01680 SOR/SNZ family KS08_00085 PF01174 SNO glutamine amidotransferase family KS08_00090 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KS08_00090 PF02403 Seryl-tRNA synthetase N-terminal domain KS08_00095 PF02595 Glycerate kinase family KS08_00105 PF01712 Deoxynucleoside kinase KS08_00110 PF01712 Deoxynucleoside kinase KS08_00115 PF01476 LysM domain KS08_00115 PF00704 Glycosyl hydrolases family 18 KS08_00120 PF00857 Isochorismatase family KS08_00125 PF14437 MafB19-like deaminase KS08_00130 PF12169 DNA polymerase III subunits gamma and tau domain III KS08_00135 PF02575 YbaB/EbfC DNA-binding family KS08_00140 PF13662 Toprim domain KS08_00140 PF02132 RecR protein KS08_00145 PF10704 Protein of unknown function (DUF2508) KS08_00150 PF07441 SigmaK-factor processing regulatory protein BofA KS08_00180 PF10764 Inhibitor of sigma-G Gin KS08_00185 PF10112 5-bromo-4-chloroindolyl phosphate hydrolysis protein KS08_00190 PF05816 Toxic anion resistance protein (TelA) KS08_00195 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain KS08_00195 PF01276 Orn/Lys/Arg decarboxylase, major domain KS08_00200 PF02223 Thymidylate kinase KS08_00205 PF06153 Cyclic-di-AMP receptor KS08_00210 PF03885 Protein of unknown function (DUF327) KS08_00215 PF09115 DNA polymerase III, delta subunit, C terminal KS08_00220 PF04468 PSP1 C-terminal conserved region KS08_00225 PF06156 Initiation control protein YabA KS08_00230 PF05175 Methyltransferase small domain KS08_00235 PF01541 GIY-YIG catalytic domain KS08_00240 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KS08_00245 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin KS08_00245 PF18277 AbrB C-terminal domain KS08_00250 PF08264 Anticodon-binding domain of tRNA KS08_00250 PF09334 tRNA synthetases class I (M) KS08_00250 PF01588 Putative tRNA binding domain KS08_00255 PF01026 TatD related DNase KS08_00260 PF03990 G5-linked-Ubiquitin-like domain KS08_00260 PF06725 3D domain KS08_00260 PF07501 G5 domain KS08_00265 PF13662 Toprim domain KS08_00265 PF13331 Domain of unknown function (DUF4093) KS08_00270 PF00398 Ribosomal RNA adenine dimethylase KS08_00275 PF05582 YabG peptidase U57 KS08_00280 PF06257 Biofilm formation stimulator VEG KS08_00285 PF00269 Small, acid-soluble spore proteins, alpha/beta type KS08_00290 PF00288 GHMP kinases N terminal domain KS08_00290 PF08544 GHMP kinases C terminal KS08_00295 PF09182 Bacterial purine repressor, N-terminal KS08_00295 PF00156 Phosphoribosyl transferase domain KS08_00300 PF01042 Endoribonuclease L-PSP KS08_00305 PF04026 SpoVG KS08_00310 PF00132 Bacterial transferase hexapeptide (six repeats) KS08_00310 PF00483 Nucleotidyl transferase KS08_00315 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase KS08_00315 PF14572 Phosphoribosyl synthetase-associated domain KS08_00320 PF01386 Ribosomal L25p family KS08_00320 PF14693 Ribosomal protein TL5, C-terminal domain KS08_00325 PF01195 Peptidyl-tRNA hydrolase KS08_00330 PF10955 Protein of unknown function (DUF2757) KS08_00335 PF17757 UvrB interaction domain KS08_00335 PF03461 TRCF domain KS08_00335 PF00271 Helicase conserved C-terminal domain KS08_00335 PF00270 DEAD/DEAH box helicase KS08_00335 PF02559 CarD-like/TRCF domain KS08_00340 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin KS08_00340 PF15714 Stage V sporulation protein T C-terminal, transcription factor KS08_00345 PF14667 Polysaccharide biosynthesis C-terminal domain KS08_00345 PF01943 Polysaccharide biosynthesis protein KS08_00350 PF03819 MazG nucleotide pyrophosphohydrolase domain KS08_00350 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KS08_00355 PF01479 S4 domain KS08_00360 PF07873 YabP family KS08_00365 PF09578 Spore cortex protein YabQ (Spore_YabQ) KS08_00370 PF04977 Septum formation initiator KS08_00375 PF00575 S1 RNA binding domain KS08_00390 PF07228 Stage II sporulation protein E (SpoIIE) KS08_00395 PF00092 von Willebrand factor type A domain KS08_00400 PF00069 Protein kinase domain KS08_00405 PF01171 PP-loop family KS08_00405 PF09179 TilS substrate binding domain KS08_00405 PF11734 TilS substrate C-terminal domain KS08_00415 PF01434 Peptidase family M41 KS08_00415 PF00004 ATPase family associated with various cellular activities (AAA) KS08_00415 PF17862 AAA+ lid domain KS08_00415 PF06480 FtsH Extracellular KS08_00420 PF03309 Type III pantothenate kinase KS08_00425 PF01430 Hsp33 protein KS08_00430 PF13145 PPIC-type PPIASE domain KS08_00435 PF00291 Pyridoxal-phosphate dependent enzyme KS08_00440 PF04715 Anthranilate synthase component I, N terminal region KS08_00440 PF00425 chorismate binding enzyme KS08_00445 PF00117 Glutamine amidotransferase class-I KS08_00450 PF01063 Amino-transferase class IV KS08_00455 PF00809 Pterin binding enzyme KS08_00460 PF02152 Dihydroneopterin aldolase KS08_00465 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) KS08_00470 PF01381 Helix-turn-helix KS08_00475 PF01207 Dihydrouridine synthase (Dus) KS08_00480 PF01336 OB-fold nucleic acid binding domain KS08_00480 PF00152 tRNA synthetases class II (D, K and N) KS08_00500 PF05848 CtsR N-terminal HTH domain KS08_00500 PF17727 CtsR C-terminal dimerization domain KS08_00505 PF02151 UvrB/uvrC motif KS08_00510 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain KS08_00515 PF02861 Clp amino terminal domain, pathogenicity island component KS08_00515 PF10431 C-terminal, D2-small domain, of ClpB protein KS08_00515 PF17871 AAA lid domain KS08_00515 PF07724 AAA domain (Cdc48 subfamily) KS08_00515 PF00004 ATPase family associated with various cellular activities (AAA) KS08_00520 PF18073 Rubredoxin metal binding domain KS08_00525 PF10635 DisA bacterial checkpoint controller linker region KS08_00525 PF02457 DisA bacterial checkpoint controller nucleotide-binding KS08_00535 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase KS08_00540 PF02542 YgbB family KS08_00545 PF00749 tRNA synthetases class I (E and Q), catalytic domain KS08_00555 PF06426 Serine acetyltransferase, N-terminal KS08_00555 PF00132 Bacterial transferase hexapeptide (six repeats) KS08_00560 PF09190 DALR domain KS08_00560 PF01406 tRNA synthetases class I (C) catalytic domain KS08_00565 PF00636 Ribonuclease III domain KS08_00570 PF08032 RNA 2'-O ribose methyltransferase substrate binding KS08_00570 PF00588 SpoU rRNA Methylase family KS08_00575 PF05991 YacP-like NYN domain KS08_00580 PF08281 Sigma-70, region 4 KS08_00580 PF04542 Sigma-70 region 2 KS08_00585 PF00471 Ribosomal protein L33 KS08_00590 PF00584 SecE/Sec61-gamma subunits of protein translocation complex KS08_00595 PF02357 Transcription termination factor nusG KS08_00595 PF00467 KOW motif KS08_00600 PF03946 Ribosomal protein L11, N-terminal domain KS08_00600 PF00298 Ribosomal protein L11, RNA binding domain KS08_00605 PF00687 Ribosomal protein L1p/L10e family KS08_00610 PF00466 Ribosomal protein L10 KS08_00615 PF16320 Ribosomal protein L7/L12 dimerisation domain KS08_00615 PF00542 Ribosomal protein L7/L12 C-terminal domain KS08_00620 PF05175 Methyltransferase small domain KS08_00625 PF04563 RNA polymerase beta subunit KS08_00625 PF04561 RNA polymerase Rpb2, domain 2 KS08_00625 PF10385 RNA polymerase beta subunit external 1 domain KS08_00625 PF04565 RNA polymerase Rpb2, domain 3 KS08_00625 PF00562 RNA polymerase Rpb2, domain 6 KS08_00625 PF04560 RNA polymerase Rpb2, domain 7 KS08_00630 PF04998 RNA polymerase Rpb1, domain 5 KS08_00630 PF04997 RNA polymerase Rpb1, domain 1 KS08_00630 PF00623 RNA polymerase Rpb1, domain 2 KS08_00630 PF05000 RNA polymerase Rpb1, domain 4 KS08_00630 PF04983 RNA polymerase Rpb1, domain 3 KS08_00635 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KS08_00640 PF00164 Ribosomal protein S12/S23 KS08_00645 PF00177 Ribosomal protein S7p/S5e KS08_00650 PF00679 Elongation factor G C-terminus KS08_00650 PF14492 Elongation Factor G, domain II KS08_00650 PF03764 Elongation factor G, domain IV KS08_00650 PF03144 Elongation factor Tu domain 2 KS08_00650 PF00009 Elongation factor Tu GTP binding domain KS08_00655 PF03144 Elongation factor Tu domain 2 KS08_00655 PF00009 Elongation factor Tu GTP binding domain KS08_00655 PF03143 Elongation factor Tu C-terminal domain KS08_00660 PF12146 Serine aminopeptidase, S33 KS08_00665 PF00338 Ribosomal protein S10p/S20e KS08_00670 PF00297 Ribosomal protein L3 KS08_00675 PF00573 Ribosomal protein L4/L1 family KS08_00680 PF00276 Ribosomal protein L23 KS08_00685 PF03947 Ribosomal Proteins L2, C-terminal domain KS08_00685 PF00181 Ribosomal Proteins L2, RNA binding domain KS08_00690 PF00203 Ribosomal protein S19 KS08_00695 PF00237 Ribosomal protein L22p/L17e KS08_00700 PF07650 KH domain KS08_00700 PF00189 Ribosomal protein S3, C-terminal domain KS08_00705 PF00252 Ribosomal protein L16p/L10e KS08_00710 PF00831 Ribosomal L29 protein KS08_00715 PF00366 Ribosomal protein S17 KS08_00720 PF00238 Ribosomal protein L14p/L23e KS08_00725 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 KS08_00725 PF00467 KOW motif KS08_00730 PF00673 ribosomal L5P family C-terminus KS08_00730 PF00281 Ribosomal protein L5 KS08_00735 PF00253 Ribosomal protein S14p/S29e KS08_00740 PF00410 Ribosomal protein S8 KS08_00745 PF00347 Ribosomal protein L6 KS08_00750 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast KS08_00755 PF03719 Ribosomal protein S5, C-terminal domain KS08_00755 PF00333 Ribosomal protein S5, N-terminal domain KS08_00760 PF00327 Ribosomal protein L30p/L7e KS08_00765 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A KS08_00770 PF00344 SecY translocase KS08_00775 PF05191 Adenylate kinase, active site lid KS08_00780 PF00557 Metallopeptidase family M24 KS08_00790 PF01176 Translation initiation factor 1A / IF-1 KS08_00795 PF00444 Ribosomal protein L36 KS08_00800 PF00416 Ribosomal protein S13/S18 KS08_00805 PF00411 Ribosomal protein S11 KS08_00810 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain KS08_00810 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain KS08_00810 PF01000 RNA polymerase Rpb3/RpoA insert domain KS08_00815 PF01196 Ribosomal protein L17 KS08_00820 PF00005 ABC transporter KS08_00825 PF00005 ABC transporter KS08_00830 PF02361 Cobalt transport protein KS08_00835 PF01416 tRNA pseudouridine synthase KS08_00840 PF00572 Ribosomal protein L13 KS08_00845 PF00380 Ribosomal protein S9/S16 KS08_00850 PF08241 Methyltransferase domain KS08_00855 PF10730 Protein of unknown function (DUF2521) KS08_00860 PF01520 N-acetylmuramoyl-L-alanine amidase KS08_00865 PF10609 NUBPL iron-transfer P-loop NTPase KS08_00870 PF17898 Spore germination GerD central core domain KS08_00875 PF14089 KinB-signalling pathway activation in sporulation KS08_00880 PF01522 Polysaccharide deacetylase KS08_00900 PF07690 Major Facilitator Superfamily KS08_00915 PF08240 Alcohol dehydrogenase GroES-like domain KS08_00915 PF00107 Zinc-binding dehydrogenase KS08_00920 PF00916 Sulfate permease family KS08_00920 PF01740 STAS domain KS08_00925 PF01758 Sodium Bile acid symporter family KS08_00930 PF00756 Putative esterase KS08_00935 PF01032 FecCD transport family KS08_00940 PF01032 FecCD transport family KS08_00945 PF01497 Periplasmic binding protein KS08_00950 PF12833 Helix-turn-helix domain KS08_00950 PF01497 Periplasmic binding protein KS08_00955 PF07075 Protein of unknown function (DUF1343) KS08_00960 PF01915 Glycosyl hydrolase family 3 C-terminal domain KS08_00960 PF00933 Glycosyl hydrolase family 3 N terminal domain KS08_00965 PF00144 Beta-lactamase KS08_00970 PF00367 phosphotransferase system, EIIB KS08_00970 PF02378 Phosphotransferase system, EIIC KS08_00975 PF01380 SIS domain KS08_00985 PF04463 Protein of unknown function (DUF523) KS08_01015 PF04542 Sigma-70 region 2 KS08_01015 PF08281 Sigma-70, region 4 KS08_01020 PF13490 Putative zinc-finger KS08_01025 PF02457 DisA bacterial checkpoint controller nucleotide-binding KS08_01030 PF07949 YbbR-like protein KS08_01035 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KS08_01035 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KS08_01035 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KS08_01035 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KS08_01040 PF01380 SIS domain KS08_01065 PF16226 Domain of unknown function (DUF4885) KS08_01070 PF00248 Aldo/keto reductase family KS08_01075 PF04172 LrgB-like family KS08_01080 PF03788 LrgA family KS08_01085 PF01047 MarR family KS08_01090 PF00324 Amino acid permease KS08_01095 PF13419 Haloacid dehalogenase-like hydrolase KS08_01100 PF07730 Histidine kinase KS08_01105 PF00196 Bacterial regulatory proteins, luxR family KS08_01105 PF00072 Response regulator receiver domain KS08_01110 PF00005 ABC transporter KS08_01130 PF16219 Domain of unknown function (DUF4879) KS08_01135 PF17334 Minor curli fiber component A KS08_01150 PF13520 Amino acid permease KS08_01155 PF10852 Protein of unknown function (DUF2651) KS08_01160 PF03009 Glycerophosphoryl diester phosphodiesterase family KS08_01165 PF07690 Major Facilitator Superfamily KS08_01170 PF10852 Protein of unknown function (DUF2651) KS08_01175 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal KS08_01175 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal KS08_01190 PF00465 Iron-containing alcohol dehydrogenase KS08_01195 PF02222 ATP-grasp domain KS08_01200 PF01066 CDP-alcohol phosphatidyltransferase KS08_01205 PF09335 SNARE associated Golgi protein KS08_01210 PF02666 Phosphatidylserine decarboxylase KS08_01225 PF00375 Sodium:dicarboxylate symporter family KS08_01230 PF01063 Amino-transferase class IV KS08_01235 PF00324 Amino acid permease KS08_01240 PF02574 Homocysteine S-methyltransferase KS08_01245 PF01235 Sodium:alanine symporter family KS08_01250 PF04960 Glutaminase KS08_01255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS08_01260 PF00072 Response regulator receiver domain KS08_01260 PF08664 YcbB domain KS08_01265 PF01636 Phosphotransferase enzyme family KS08_01270 PF15777 Tryptophan RNA-binding attenuator protein inhibitory protein KS08_01280 PF01545 Cation efflux family KS08_01280 PF16916 Dimerisation domain of Zinc Transporter KS08_01285 PF00881 Nitroreductase family KS08_01290 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KS08_01295 PF07681 DoxX KS08_01300 PF00085 Thioredoxin KS08_01310 PF10710 Protein of unknown function (DUF2512) KS08_01315 PF07486 Cell Wall Hydrolase KS08_01320 PF09423 PhoD-like phosphatase KS08_01320 PF16655 PhoD-like phosphatase, N-terminal domain KS08_01325 PF02416 mttA/Hcf106 family KS08_01330 PF00902 Sec-independent protein translocase protein (TatC) KS08_01335 PF01470 Pyroglutamyl peptidase KS08_01340 PF00266 Aminotransferase class-V KS08_01345 PF07690 Major Facilitator Superfamily KS08_01350 PF00440 Bacterial regulatory proteins, tetR family KS08_01355 PF01674 Lipase (class 2) KS08_01360 PF05225 helix-turn-helix, Psq domain KS08_01360 PF02810 SEC-C motif KS08_01365 PF00248 Aldo/keto reductase family KS08_01370 PF17118 Domain of unknown function (DUF5105) KS08_01370 PF11611 Domain of unknown function (DUF4352) KS08_01375 PF16244 Domain of unknown function (DUF4901) KS08_01380 PF16244 Domain of unknown function (DUF4901) KS08_01385 PF13539 D-alanyl-D-alanine carboxypeptidase KS08_01390 PF18801 response regulator aspartate phosphatase H, N terminal KS08_01400 PF00128 Alpha amylase, catalytic domain KS08_01410 PF03551 Transcriptional regulator PadR-like family KS08_01410 PF10400 Virulence activator alpha C-term KS08_01415 PF01297 Zinc-uptake complex component A periplasmic KS08_01420 PF00005 ABC transporter KS08_01425 PF00950 ABC 3 transport family KS08_01430 PF00296 Luciferase-like monooxygenase KS08_01435 PF02342 TerD domain KS08_01440 PF02342 TerD domain KS08_01445 PF02342 TerD domain KS08_01450 PF03741 Integral membrane protein TerC family KS08_01455 PF14266 Putative component of 'biosynthetic module' KS08_01460 PF05816 Toxic anion resistance protein (TelA) KS08_01465 PF07690 Major Facilitator Superfamily KS08_01470 PF00005 ABC transporter KS08_01470 PF00571 CBS domain KS08_01475 PF00528 Binding-protein-dependent transport system inner membrane component KS08_01480 PF04069 Substrate binding domain of ABC-type glycine betaine transport system KS08_01485 PF01546 Peptidase family M20/M25/M40 KS08_01485 PF07687 Peptidase dimerisation domain KS08_01490 PF03606 C4-dicarboxylate anaerobic carrier KS08_01500 PF06271 RDD family KS08_01505 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KS08_01505 PF00056 lactate/malate dehydrogenase, NAD binding domain KS08_01510 PF07690 Major Facilitator Superfamily KS08_01515 PF01047 MarR family KS08_01520 PF01810 LysE type translocator KS08_01525 PF08892 YqcI/YcgG family KS08_01530 PF00324 Amino acid permease KS08_01535 PF09347 Domain of unknown function (DUF1989) KS08_01540 PF02540 NAD synthase KS08_01545 PF01261 Xylose isomerase-like TIM barrel KS08_01550 PF07690 Major Facilitator Superfamily KS08_01555 PF01202 Shikimate kinase KS08_01560 PF05448 Acetyl xylan esterase (AXE1) KS08_01565 PF10127 RNA repair pathway DNA polymerase beta family KS08_01570 PF01619 Proline dehydrogenase KS08_01575 PF00171 Aldehyde dehydrogenase family KS08_01580 PF00474 Sodium:solute symporter family KS08_01585 PF13556 PucR C-terminal helix-turn-helix domain KS08_01585 PF17853 GGDEF-like domain KS08_01590 PF07992 Pyridine nucleotide-disulphide oxidoreductase KS08_01595 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KS08_01600 PF00355 Rieske [2Fe-2S] domain KS08_01605 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KS08_01605 PF04324 BFD-like [2Fe-2S] binding domain KS08_01605 PF18267 Rubredoxin NAD+ reductase C-terminal domain KS08_01605 PF07992 Pyridine nucleotide-disulphide oxidoreductase KS08_01605 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KS08_01610 PF07690 Major Facilitator Superfamily KS08_01615 PF02492 CobW/HypB/UreG, nucleotide-binding domain KS08_01615 PF07683 Cobalamin synthesis protein cobW C-terminal domain KS08_01620 PF00107 Zinc-binding dehydrogenase KS08_01620 PF13823 Alcohol dehydrogenase GroES-associated KS08_01620 PF08240 Alcohol dehydrogenase GroES-like domain KS08_01625 PF06271 RDD family KS08_01630 PF10925 Protein of unknown function (DUF2680) KS08_01635 PF00232 Glycosyl hydrolase family 1 KS08_01640 PF11033 Competence protein J (ComJ) KS08_01645 PF14040 Deoxyribonuclease NucA/NucB KS08_01650 PF01380 SIS domain KS08_01655 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family KS08_01660 PF01638 HxlR-like helix-turn-helix KS08_01670 PF00550 Phosphopantetheine attachment site KS08_01670 PF00668 Condensation domain KS08_01670 PF00501 AMP-binding enzyme KS08_01670 PF13193 AMP-binding enzyme C-terminal domain KS08_01675 PF00550 Phosphopantetheine attachment site KS08_01675 PF00668 Condensation domain KS08_01675 PF13193 AMP-binding enzyme C-terminal domain KS08_01675 PF00501 AMP-binding enzyme KS08_01680 PF00668 Condensation domain KS08_01680 PF13193 AMP-binding enzyme C-terminal domain KS08_01680 PF00550 Phosphopantetheine attachment site KS08_01680 PF00501 AMP-binding enzyme KS08_01680 PF00975 Thioesterase domain KS08_01685 PF00975 Thioesterase domain KS08_01690 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain KS08_01690 PF07685 CobB/CobQ-like glutamine amidotransferase domain KS08_01690 PF00155 Aminotransferase class I and II KS08_01695 PF01648 4'-phosphopantetheinyl transferase superfamily KS08_01705 PF00005 ABC transporter KS08_01710 PF00528 Binding-protein-dependent transport system inner membrane component KS08_01715 PF00497 Bacterial extracellular solute-binding proteins, family 3 KS08_01720 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KS08_01720 PF03466 LysR substrate binding domain KS08_01725 PF02441 Flavoprotein KS08_01730 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase KS08_01745 PF00854 POT family KS08_01750 PF12708 Pectate lyase superfamily protein KS08_01750 PF13229 Right handed beta helix region KS08_01760 PF03323 Bacillus/Clostridium GerA spore germination protein KS08_01765 PF05504 Spore germination B3/ GerAC like, C-terminal KS08_01770 PF03845 Spore germination protein KS08_01785 PF00497 Bacterial extracellular solute-binding proteins, family 3 KS08_01790 PF00528 Binding-protein-dependent transport system inner membrane component KS08_01795 PF00005 ABC transporter KS08_01805 PF03972 MmgE/PrpD family KS08_01810 PF00005 ABC transporter KS08_01815 PF02687 FtsX-like permease family KS08_01815 PF12704 MacB-like periplasmic core domain KS08_01820 PF00072 Response regulator receiver domain KS08_01820 PF00486 Transcriptional regulatory protein, C terminal KS08_01825 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS08_01825 PF00512 His Kinase A (phospho-acceptor) domain KS08_01825 PF00672 HAMP domain KS08_01830 PF18801 response regulator aspartate phosphatase H, N terminal KS08_01835 PF11131 Rap-phr extracellular signalling KS08_01840 PF09680 Family of unknown function KS08_01845 PF13840 ACT domain KS08_01845 PF00696 Amino acid kinase family KS08_01850 PF01032 FecCD transport family KS08_01855 PF01032 FecCD transport family KS08_01860 PF00005 ABC transporter KS08_01865 PF01497 Periplasmic binding protein KS08_01870 PF07690 Major Facilitator Superfamily KS08_01875 PF00440 Bacterial regulatory proteins, tetR family KS08_01880 PF00881 Nitroreductase family KS08_01885 PF03992 Antibiotic biosynthesis monooxygenase KS08_01890 PF01022 Bacterial regulatory protein, arsR family KS08_01895 PF00392 Bacterial regulatory proteins, gntR family KS08_01895 PF00155 Aminotransferase class I and II KS08_01900 PF00202 Aminotransferase class-III KS08_01905 PF00171 Aldehyde dehydrogenase family KS08_01910 PF06800 Sugar transport protein KS08_01920 PF07987 Domain of unkown function (DUF1775) KS08_01925 PF13115 YtkA-like KS08_01925 PF04234 CopC domain KS08_01925 PF05425 Copper resistance protein D KS08_01930 PF08220 DeoR-like helix-turn-helix domain KS08_01930 PF05573 NosL KS08_01940 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KS08_01940 PF02378 Phosphotransferase system, EIIC KS08_01945 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KS08_01950 PF01232 Mannitol dehydrogenase Rossmann domain KS08_01950 PF08125 Mannitol dehydrogenase C-terminal domain KS08_01955 PF07977 FabA-like domain KS08_01970 PF03746 LamB/YcsF family KS08_01975 PF01566 Natural resistance-associated macrophage protein KS08_01980 PF07286 Protein of unknown function (DUF1445) KS08_01985 PF02682 Carboxyltransferase domain, subdomain C and D KS08_01990 PF02626 Carboxyltransferase domain, subdomain A and B KS08_01995 PF09339 IclR helix-turn-helix domain KS08_01995 PF01614 Bacterial transcriptional regulator KS08_02000 PF13472 GDSL-like Lipase/Acylhydrolase family KS08_02005 PF13129 Protein of unknown function (DUF3953) KS08_02010 PF03992 Antibiotic biosynthesis monooxygenase KS08_02015 PF03717 Penicillin-binding Protein dimerisation domain KS08_02015 PF00905 Penicillin binding protein transpeptidase domain KS08_02015 PF05223 NTF2-like N-terminal transpeptidase domain KS08_02020 PF00248 Aldo/keto reductase family KS08_02025 PF08279 HTH domain KS08_02025 PF05043 Mga helix-turn-helix domain KS08_02025 PF00874 PRD domain KS08_02025 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KS08_02025 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KS08_02030 PF00501 AMP-binding enzyme KS08_02030 PF13193 AMP-binding enzyme C-terminal domain KS08_02045 PF13302 Acetyltransferase (GNAT) domain KS08_02050 PF16242 Pyridoxamine 5'-phosphate oxidase like KS08_02055 PF10997 Alternate to MurJ KS08_02060 PF12823 Domain of unknown function (DUF3817) KS08_02065 PF01037 Lrp/AsnC ligand binding domain KS08_02070 PF01131 DNA topoisomerase KS08_02070 PF01751 Toprim domain KS08_02080 PF00990 Diguanylate cyclase, GGDEF domain KS08_02085 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) KS08_02095 PF03170 Bacterial cellulose synthase subunit KS08_02100 PF13520 Amino acid permease KS08_02105 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KS08_02105 PF00205 Thiamine pyrophosphate enzyme, central domain KS08_02105 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KS08_02115 PF01476 LysM domain KS08_02115 PF05257 CHAP domain KS08_02135 PF13176 Tetratricopeptide repeat KS08_02135 PF18801 response regulator aspartate phosphatase H, N terminal KS08_02140 PF10676 Spore germination protein gerPA/gerPF KS08_02150 PF01566 Natural resistance-associated macrophage protein KS08_02165 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) KS08_02170 PF17314 Family of unknown function (DUF5360) KS08_02175 PF00893 Small Multidrug Resistance protein KS08_02180 PF12787 EcsC protein family KS08_02185 PF10685 Stress-induced bacterial acidophilic repeat motif KS08_02185 PF00477 Small hydrophilic plant seed protein KS08_02190 PF07883 Cupin domain KS08_02195 PF16291 Domain of unknown function (DUF4937 KS08_02200 PF05067 Manganese containing catalase KS08_02205 PF03480 Bacterial extracellular solute-binding protein, family 7 KS08_02210 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS08_02210 PF17203 Single cache domain 3 KS08_02210 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain KS08_02215 PF08279 HTH domain KS08_02215 PF00072 Response regulator receiver domain KS08_02220 PF00375 Sodium:dicarboxylate symporter family KS08_02225 PF01594 AI-2E family transporter KS08_02230 PF00005 ABC transporter KS08_02245 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KS08_02245 PF02770 Acyl-CoA dehydrogenase, middle domain KS08_02245 PF08028 Acyl-CoA dehydrogenase, C-terminal domain KS08_02250 PF13040 Fur-regulated basic protein B KS08_02260 PF16916 Dimerisation domain of Zinc Transporter KS08_02260 PF01545 Cation efflux family KS08_02265 PF00085 Thioredoxin KS08_02270 PF07478 D-ala D-ala ligase C-terminus KS08_02270 PF01820 D-ala D-ala ligase N-terminus KS08_02275 PF08245 Mur ligase middle domain KS08_02275 PF02875 Mur ligase family, glutamate ligase domain KS08_02275 PF01225 Mur ligase family, catalytic domain KS08_02280 PF00271 Helicase conserved C-terminal domain KS08_02280 PF00270 DEAD/DEAH box helicase KS08_02285 PF03703 Bacterial PH domain KS08_02290 PF03703 Bacterial PH domain KS08_02295 PF01694 Rhomboid family KS08_02300 PF01648 4'-phosphopantetheinyl transferase superfamily KS08_02310 PF01168 Alanine racemase, N-terminal domain KS08_02310 PF00842 Alanine racemase, C-terminal domain KS08_02315 PF01402 Ribbon-helix-helix protein, copG family KS08_02320 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system KS08_02325 PF01740 STAS domain KS08_02325 PF08678 Rsbr N terminal KS08_02330 PF01740 STAS domain KS08_02335 PF13581 Histidine kinase-like ATPase domain KS08_02340 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain KS08_02340 PF07228 Stage II sporulation protein E (SpoIIE) KS08_02345 PF01740 STAS domain KS08_02350 PF13581 Histidine kinase-like ATPase domain KS08_02355 PF04542 Sigma-70 region 2 KS08_02355 PF04539 Sigma-70 region 3 KS08_02355 PF04545 Sigma-70, region 4 KS08_02360 PF07228 Stage II sporulation protein E (SpoIIE) KS08_02365 PF09371 Tex-like protein N-terminal domain KS08_02365 PF17674 HHH domain KS08_02365 PF00575 S1 RNA binding domain KS08_02365 PF16921 Tex protein YqgF-like domain KS08_02375 PF10263 SprT-like family KS08_02415 PF07859 alpha/beta hydrolase fold KS08_02420 PF02566 OsmC-like protein KS08_02425 PF01047 MarR family KS08_02435 PF00583 Acetyltransferase (GNAT) family KS08_02435 PF01047 MarR family KS08_02440 PF07690 Major Facilitator Superfamily KS08_02445 PF02156 Glycosyl hydrolase family 26 KS08_02465 PF02082 Transcriptional regulator KS08_02470 PF02525 Flavodoxin-like fold KS08_02475 PF00313 'Cold-shock' DNA-binding domain KS08_02480 PF01177 Asp/Glu/Hydantoin racemase KS08_02495 PF00155 Aminotransferase class I and II KS08_02495 PF00392 Bacterial regulatory proteins, gntR family KS08_02500 PF07690 Major Facilitator Superfamily KS08_02505 PF01734 Patatin-like phospholipase KS08_02515 PF08031 Berberine and berberine like KS08_02515 PF01565 FAD binding domain KS08_02525 PF16916 Dimerisation domain of Zinc Transporter KS08_02525 PF01545 Cation efflux family KS08_02535 PF07883 Cupin domain KS08_02540 PF00583 Acetyltransferase (GNAT) family KS08_02545 PF06445 GyrI-like small molecule binding domain KS08_02545 PF12833 Helix-turn-helix domain KS08_02555 PF04055 Radical SAM superfamily KS08_02570 PF08240 Alcohol dehydrogenase GroES-like domain KS08_02570 PF00107 Zinc-binding dehydrogenase KS08_02575 PF13411 MerR HTH family regulatory protein KS08_02585 PF00392 Bacterial regulatory proteins, gntR family KS08_02585 PF00155 Aminotransferase class I and II KS08_02590 PF04299 Putative FMN-binding domain KS08_02595 PF07690 Major Facilitator Superfamily KS08_02600 PF00440 Bacterial regulatory proteins, tetR family KS08_02600 PF16859 Tetracyclin repressor-like, C-terminal domain KS08_02605 PF00892 EamA-like transporter family KS08_02610 PF00155 Aminotransferase class I and II KS08_02610 PF00392 Bacterial regulatory proteins, gntR family KS08_02615 PF07875 Coat F domain KS08_02625 PF00107 Zinc-binding dehydrogenase KS08_02625 PF13823 Alcohol dehydrogenase GroES-associated KS08_02625 PF08240 Alcohol dehydrogenase GroES-like domain KS08_02630 PF07875 Coat F domain KS08_02640 PF03176 MMPL family KS08_02645 PF07722 Peptidase C26 KS08_02655 PF13302 Acetyltransferase (GNAT) domain KS08_02660 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KS08_02660 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KS08_02665 PF00465 Iron-containing alcohol dehydrogenase KS08_02670 PF07690 Major Facilitator Superfamily KS08_02675 PF00109 Beta-ketoacyl synthase, N-terminal domain KS08_02675 PF02801 Beta-ketoacyl synthase, C-terminal domain KS08_02685 PF01925 Sulfite exporter TauE/SafE KS08_02690 PF00583 Acetyltransferase (GNAT) family KS08_02695 PF13411 MerR HTH family regulatory protein KS08_02695 PF06445 GyrI-like small molecule binding domain KS08_02700 PF00892 EamA-like transporter family KS08_02705 PF00293 NUDIX domain KS08_02710 PF00561 alpha/beta hydrolase fold KS08_02715 PF00180 Isocitrate/isopropylmalate dehydrogenase KS08_02720 PF07729 FCD domain KS08_02720 PF00392 Bacterial regulatory proteins, gntR family KS08_02725 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase KS08_02735 PF00144 Beta-lactamase KS08_02735 PF11954 Domain of unknown function (DUF3471) KS08_02740 PF07563 Protein of unknown function (DUF1541) KS08_02745 PF07690 Major Facilitator Superfamily KS08_02750 PF07702 UTRA domain KS08_02750 PF00392 Bacterial regulatory proteins, gntR family KS08_02755 PF00392 Bacterial regulatory proteins, gntR family KS08_02755 PF07729 FCD domain KS08_02760 PF07690 Major Facilitator Superfamily KS08_02765 PF00893 Small Multidrug Resistance protein KS08_02770 PF00893 Small Multidrug Resistance protein KS08_02775 PF17934 Tetracyclin repressor-like, C-terminal domain KS08_02775 PF00440 Bacterial regulatory proteins, tetR family KS08_02780 PF13520 Amino acid permease KS08_02790 PF08327 Activator of Hsp90 ATPase homolog 1-like protein KS08_02795 PF08240 Alcohol dehydrogenase GroES-like domain KS08_02795 PF00107 Zinc-binding dehydrogenase KS08_02800 PF00083 Sugar (and other) transporter KS08_02840 PF02769 AIR synthase related protein, C-terminal domain KS08_02840 PF00586 AIR synthase related protein, N-terminal domain KS08_02845 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE KS08_02850 PF00814 Glycoprotease family KS08_02855 PF00583 Acetyltransferase (GNAT) family KS08_02860 PF00814 Glycoprotease family KS08_02865 PF12848 ABC transporter KS08_02865 PF16326 ABC transporter C-terminal domain KS08_02865 PF00005 ABC transporter KS08_02870 PF01967 MoaC family KS08_02875 PF02629 CoA binding domain KS08_02875 PF06971 Putative DNA-binding protein N-terminus KS08_02880 PF02416 mttA/Hcf106 family KS08_02885 PF00902 Sec-independent protein translocase protein (TatC) KS08_02890 PF14146 Domain of unknown function (DUF4305) KS08_02895 PF02517 CPBP intramembrane metalloprotease KS08_02900 PF00166 Chaperonin 10 Kd subunit KS08_02905 PF00118 TCP-1/cpn60 chaperonin family KS08_02910 PF08924 Domain of unknown function (DUF1906) KS08_02910 PF01471 Putative peptidoglycan binding domain KS08_02925 PF00931 NB-ARC domain KS08_02925 PF13176 Tetratricopeptide repeat KS08_02930 PF00107 Zinc-binding dehydrogenase KS08_02930 PF08240 Alcohol dehydrogenase GroES-like domain KS08_02940 PF00294 pfkB family carbohydrate kinase KS08_02945 PF14154 Domain of unknown function (DUF4306) KS08_02950 PF04012 PspA/IM30 family KS08_02955 PF08271 TFIIB zinc-binding KS08_02960 PF04536 TPM domain KS08_02965 PF13421 SPFH domain-Band 7 family KS08_02970 PF01757 Acyltransferase family KS08_02975 PF13739 Deacetylase PdaC KS08_02975 PF11738 Protein of unknown function (DUF3298) KS08_02980 PF04542 Sigma-70 region 2 KS08_02980 PF08281 Sigma-70, region 4 KS08_02985 PF08240 Alcohol dehydrogenase GroES-like domain KS08_02985 PF00107 Zinc-binding dehydrogenase KS08_02990 PF03330 Lytic transglycolase KS08_02995 PF07676 WD40-like Beta Propeller Repeat KS08_03005 PF14169 Cold-inducible protein YdjO KS08_03010 PF07731 Multicopper oxidase KS08_03010 PF00394 Multicopper oxidase KS08_03010 PF07732 Multicopper oxidase KS08_03015 PF00324 Amino acid permease KS08_03025 PF16916 Dimerisation domain of Zinc Transporter KS08_03025 PF01545 Cation efflux family KS08_03030 PF07726 ATPase family associated with various cellular activities (AAA) KS08_03030 PF17863 AAA lid domain KS08_03035 PF01882 Protein of unknown function DUF58 KS08_03040 PF13559 Domain of unknown function (DUF4129) KS08_03040 PF11992 Domain of unknown function (DUF3488) KS08_03040 PF01841 Transglutaminase-like superfamily KS08_03045 PF02540 NAD synthase KS08_03045 PF00958 GMP synthase C terminal domain KS08_03045 PF00117 Glutamine amidotransferase class-I KS08_03050 PF04542 Sigma-70 region 2 KS08_03050 PF04545 Sigma-70, region 4 KS08_03060 PF00860 Permease family KS08_03070 PF13076 Fur-regulated basic protein A KS08_03075 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KS08_03080 PF14044 NETI protein KS08_03085 PF00731 AIR carboxylase KS08_03090 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain KS08_03090 PF02222 ATP-grasp domain KS08_03095 PF10397 Adenylosuccinate lyase C-terminus KS08_03095 PF00206 Lyase KS08_03100 PF01259 SAICAR synthetase KS08_03105 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase KS08_03115 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain KS08_03115 PF02769 AIR synthase related protein, C-terminal domain KS08_03115 PF00586 AIR synthase related protein, N-terminal domain KS08_03120 PF00156 Phosphoribosyl transferase domain KS08_03125 PF00586 AIR synthase related protein, N-terminal domain KS08_03125 PF02769 AIR synthase related protein, C-terminal domain KS08_03130 PF00551 Formyl transferase KS08_03135 PF02142 MGS-like domain KS08_03135 PF01808 AICARFT/IMPCHase bienzyme KS08_03140 PF02843 Phosphoribosylglycinamide synthetase, C domain KS08_03140 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain KS08_03140 PF02844 Phosphoribosylglycinamide synthetase, N domain KS08_03145 PF01037 Lrp/AsnC ligand binding domain KS08_03150 PF13520 Amino acid permease KS08_03155 PF11127 Protein of unknown function (DUF2892) KS08_03160 PF13382 Adenine deaminase C-terminal domain KS08_03160 PF01979 Amidohydrolase family KS08_03165 PF11258 Protein of unknown function (DUF3048) N-terminal domain KS08_03165 PF17479 Protein of unknown function (DUF3048) C-terminal domain KS08_03170 PF01371 Trp repressor protein KS08_03175 PF01645 Conserved region in glutamate synthase KS08_03185 PF01884 PcrB family KS08_03190 PF13361 UvrD-like helicase C-terminal domain KS08_03190 PF00580 UvrD/REP helicase N-terminal domain KS08_03195 PF01653 NAD-dependent DNA ligase adenylation domain KS08_03195 PF03119 NAD-dependent DNA ligase C4 zinc finger domain KS08_03195 PF03120 NAD-dependent DNA ligase OB-fold domain KS08_03195 PF12826 Helix-hairpin-helix motif KS08_03195 PF00533 BRCA1 C Terminus (BRCT) domain KS08_03200 PF07537 CamS sex pheromone cAM373 precursor KS08_03205 PF01636 Phosphotransferase enzyme family KS08_03210 PF02308 MgtC family KS08_03215 PF00474 Sodium:solute symporter family KS08_03220 PF02686 Glu-tRNAGln amidotransferase C subunit KS08_03225 PF01425 Amidase KS08_03230 PF02934 GatB/GatE catalytic domain KS08_03230 PF02637 GatB domain KS08_03235 PF00440 Bacterial regulatory proteins, tetR family KS08_03240 PF00873 AcrB/AcrD/AcrF family KS08_03245 PF00781 Diacylglycerol kinase catalytic domain KS08_03250 PF05958 tRNA (Uracil-5-)-methyltransferase KS08_03250 PF01938 TRAM domain KS08_03260 PF00005 ABC transporter KS08_03275 PF04634 Protein of unknown function, DUF600 KS08_03280 PF04634 Protein of unknown function, DUF600 KS08_03290 PF01709 Transcriptional regulator KS08_03300 PF04439 Streptomycin adenylyltransferase KS08_03305 PF11007 Spore coat associated protein JA (CotJA) KS08_03310 PF12652 CotJB protein KS08_03315 PF05067 Manganese containing catalase KS08_03320 PF00583 Acetyltransferase (GNAT) family KS08_03330 PF04239 Protein of unknown function (DUF421) KS08_03335 PF03992 Antibiotic biosynthesis monooxygenase KS08_03340 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KS08_03345 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain KS08_03345 PF01740 STAS domain KS08_03350 PF10055 Uncharacterized small protein (DUF2292) KS08_03355 PF01687 Riboflavin kinase KS08_03360 PF01027 Inhibitor of apoptosis-promoting Bax1 KS08_03365 PF01047 MarR family KS08_03370 PF01494 FAD binding domain KS08_03375 PF13039 Protein of unknown function (DUF3900) KS08_03375 PF13037 Domain of unknown function (DUF3898) KS08_03380 PF00067 Cytochrome P450 KS08_03380 PF00258 Flavodoxin KS08_03380 PF00667 FAD binding domain KS08_03380 PF00175 Oxidoreductase NAD-binding domain KS08_03390 PF00884 Sulfatase KS08_03395 PF00483 Nucleotidyl transferase KS08_03400 PF16363 GDP-mannose 4,6 dehydratase KS08_03405 PF03407 Nucleotide-diphospho-sugar transferase KS08_03410 PF00535 Glycosyl transferase family 2 KS08_03415 PF03407 Nucleotide-diphospho-sugar transferase KS08_03420 PF07690 Major Facilitator Superfamily KS08_03425 PF13520 Amino acid permease KS08_03430 PF00171 Aldehyde dehydrogenase family KS08_03435 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KS08_03445 PF00535 Glycosyl transferase family 2 KS08_03445 PF13181 Tetratricopeptide repeat KS08_03450 PF00005 ABC transporter KS08_03450 PF12848 ABC transporter KS08_03450 PF16326 ABC transporter C-terminal domain KS08_03455 PF13411 MerR HTH family regulatory protein KS08_03460 PF07690 Major Facilitator Superfamily KS08_03465 PF12848 ABC transporter KS08_03465 PF00005 ABC transporter KS08_03470 PF00270 DEAD/DEAH box helicase KS08_03470 PF00271 Helicase conserved C-terminal domain KS08_03475 PF00107 Zinc-binding dehydrogenase KS08_03475 PF16884 N-terminal domain of oxidoreductase KS08_03480 PF11486 Protein of unknown function (DUF3212) KS08_03485 PF11181 Heat induced stress protein YflT KS08_03490 PF00544 Pectate lyase KS08_03495 PF00939 Sodium:sulfate symporter transmembrane region KS08_03515 PF06580 Histidine kinase KS08_03515 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS08_03520 PF00072 Response regulator receiver domain KS08_03520 PF04397 LytTr DNA-binding domain KS08_03530 PF04203 Sortase domain KS08_03535 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain KS08_03535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS08_03540 PF08279 HTH domain KS08_03540 PF12431 Transcriptional regulator KS08_03540 PF00072 Response regulator receiver domain KS08_03545 PF03401 Tripartite tricarboxylate transporter family receptor KS08_03550 PF03600 Citrate transporter KS08_03555 PF00753 Metallo-beta-lactamase superfamily KS08_03560 PF02898 Nitric oxide synthase, oxygenase domain KS08_03565 PF00708 Acylphosphatase KS08_03570 PF03473 MOSC domain KS08_03570 PF03475 3-alpha domain KS08_03575 PF11121 Protein of unknown function (DUF2639) KS08_03585 PF11588 Protein of unknown function (DUF3243) KS08_03590 PF00557 Metallopeptidase family M24 KS08_03595 PF02378 Phosphotransferase system, EIIC KS08_03595 PF00367 phosphotransferase system, EIIB KS08_03600 PF10787 Uncharacterised protein from bacillus cereus group KS08_03605 PF00884 Sulfatase KS08_03610 PF09350 Domain of unknown function (DUF1992) KS08_03615 PF00011 Hsp20/alpha crystallin family KS08_03620 PF10676 Spore germination protein gerPA/gerPF KS08_03625 PF10676 Spore germination protein gerPA/gerPF KS08_03630 PF02378 Phosphotransferase system, EIIC KS08_03630 PF00367 phosphotransferase system, EIIB KS08_03635 PF00128 Alpha amylase, catalytic domain KS08_03635 PF16657 Maltogenic Amylase, C-terminal domain KS08_03640 PF00392 Bacterial regulatory proteins, gntR family KS08_03640 PF07702 UTRA domain KS08_03645 PF00881 Nitroreductase family KS08_03660 PF00149 Calcineurin-like phosphoesterase KS08_03660 PF02872 5'-nucleotidase, C-terminal domain KS08_03665 PF01965 DJ-1/PfpI family KS08_03670 PF00356 Bacterial regulatory proteins, lacI family KS08_03675 PF08501 Shikimate dehydrogenase substrate binding domain KS08_03675 PF18317 Shikimate 5'-dehydrogenase C-terminal domain KS08_03680 PF01487 Type I 3-dehydroquinase KS08_03685 PF07690 Major Facilitator Superfamily KS08_03690 PF06569 Protein of unknown function (DUF1128) KS08_03695 PF01451 Low molecular weight phosphotyrosine protein phosphatase KS08_03705 PF03631 Virulence factor BrkB KS08_03715 PF07690 Major Facilitator Superfamily KS08_03720 PF01699 Sodium/calcium exchanger protein KS08_03725 PF14167 YfkD-like protein KS08_03730 PF00924 Mechanosensitive ion channel KS08_03735 PF08756 YfkB-like domain KS08_03735 PF04055 Radical SAM superfamily KS08_03745 PF01522 Polysaccharide deacetylase KS08_03750 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KS08_03750 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KS08_03760 PF01544 CorA-like Mg2+ transporter protein KS08_03765 PF00730 HhH-GPD superfamily base excision DNA repair protein KS08_03770 PF05958 tRNA (Uracil-5-)-methyltransferase KS08_03770 PF01938 TRAM domain KS08_03780 PF00082 Subtilase family KS08_03785 PF00005 ABC transporter KS08_03785 PF00664 ABC transporter transmembrane region KS08_03790 PF00069 Protein kinase domain KS08_03795 PF14118 YfzA-like protein KS08_03800 PF01207 Dihydrouridine synthase (Dus) KS08_03810 PF00676 Dehydrogenase E1 component KS08_03815 PF02779 Transketolase, pyrimidine binding domain KS08_03815 PF02780 Transketolase, C-terminal domain KS08_03820 PF00364 Biotin-requiring enzyme KS08_03820 PF02817 e3 binding domain KS08_03820 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KS08_03825 PF07992 Pyridine nucleotide-disulphide oxidoreductase KS08_03825 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KS08_03830 PF00158 Sigma-54 interaction domain KS08_03830 PF01590 GAF domain KS08_03830 PF02954 Bacterial regulatory protein, Fis family KS08_03835 PF08141 Small acid-soluble spore protein H family KS08_03840 PF11975 Family 4 glycosyl hydrolase C-terminal domain KS08_03840 PF02056 Family 4 glycosyl hydrolase KS08_03845 PF01418 Helix-turn-helix domain, rpiR family KS08_03845 PF01380 SIS domain KS08_03850 PF00367 phosphotransferase system, EIIB KS08_03850 PF02378 Phosphotransferase system, EIIC KS08_03855 PF12708 Pectate lyase superfamily protein KS08_03855 PF11962 Peptidase_G2, IMC autoproteolytic cleavage domain KS08_03860 PF00664 ABC transporter transmembrane region KS08_03860 PF00005 ABC transporter KS08_03865 PF00664 ABC transporter transmembrane region KS08_03865 PF00005 ABC transporter KS08_03870 PF07681 DoxX KS08_03875 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KS08_03885 PF10400 Virulence activator alpha C-term KS08_03885 PF03551 Transcriptional regulator PadR-like family KS08_03890 PF02525 Flavodoxin-like fold KS08_03895 PF01757 Acyltransferase family KS08_03900 PF01337 Barstar (barnase inhibitor) KS08_03905 PF12867 DinB superfamily KS08_03910 PF07690 Major Facilitator Superfamily KS08_03915 PF01047 MarR family KS08_03920 PF09924 Uncharacterised conserved protein (DUF2156) KS08_03920 PF03706 Lysylphosphatidylglycerol synthase TM region KS08_03925 PF02567 Phenazine biosynthesis-like protein KS08_03930 PF00881 Nitroreductase family KS08_03935 PF14151 YfhD-like protein KS08_03940 PF14152 YfhE-like protein KS08_03945 PF01370 NAD dependent epimerase/dehydratase family KS08_03945 PF08338 Domain of unknown function (DUF1731) KS08_03950 PF02631 RecX family KS08_03955 PF08838 Protein of unknown function (DUF1811) KS08_03960 PF07690 Major Facilitator Superfamily KS08_03965 PF10794 Protein of unknown function (DUF2606) KS08_03970 PF00089 Trypsin KS08_03975 PF08176 Small acid-soluble spore protein K family KS08_03980 PF14043 WVELL protein KS08_03985 PF08239 Bacterial SH3 domain KS08_03990 PF13630 SdpI/YhfL protein family KS08_03995 PF00561 alpha/beta hydrolase fold KS08_04000 PF00535 Glycosyl transferase family 2 KS08_04005 PF09586 Bacterial membrane protein YfhO KS08_04010 PF04307 LexA-binding, inner membrane-associated putative hydrolase KS08_04015 PF00730 HhH-GPD superfamily base excision DNA repair protein KS08_04015 PF14815 NUDIX domain KS08_04030 PF04259 Small, acid-soluble spore protein, gamma-type KS08_04035 PF14182 YgaB-like protein KS08_04040 PF04167 Protein of unknown function (DUF402) KS08_04045 PF00664 ABC transporter transmembrane region KS08_04045 PF00005 ABC transporter KS08_04050 PF06081 Aromatic acid exporter family member 1 KS08_04055 PF00202 Aminotransferase class-III KS08_04060 PF00578 AhpC/TSA family KS08_04065 PF01475 Ferric uptake regulator family KS08_04070 PF11023 Zinc-ribbon containing domain KS08_04075 PF14540 Nucleotidyltransferase-like KS08_04075 PF18576 Helix-turn-helix domain KS08_04175 PF03553 Na+/H+ antiporter family KS08_04180 PF03575 Peptidase family S51 KS08_04185 PF13667 ThiC-associated domain KS08_04185 PF01964 Radical SAM ThiC family KS08_04190 PF01565 FAD binding domain KS08_04190 PF08031 Berberine and berberine like KS08_04195 PF13040 Fur-regulated basic protein B KS08_04200 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KS08_04205 PF00528 Binding-protein-dependent transport system inner membrane component KS08_04210 PF00528 Binding-protein-dependent transport system inner membrane component KS08_04210 PF12911 N-terminal TM domain of oligopeptide transport permease C KS08_04215 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KS08_04215 PF00005 ABC transporter KS08_04220 PF00005 ABC transporter KS08_04220 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KS08_04225 PF00199 Catalase KS08_04225 PF06628 Catalase-related immune-responsive KS08_04235 PF00005 ABC transporter KS08_04240 PF09084 NMT1/THI5 like KS08_04245 PF00528 Binding-protein-dependent transport system inner membrane component KS08_04250 PF00296 Luciferase-like monooxygenase KS08_04265 PF00253 Ribosomal protein S14p/S29e KS08_04275 PF01381 Helix-turn-helix KS08_04290 PF08331 Domain of unknown function (DUF1730) KS08_04295 PF12671 Putative amidase domain KS08_04300 PF00588 SpoU rRNA Methylase family KS08_04305 PF13171 Protein of unknown function (DUF4004) KS08_04310 PF04519 Polymer-forming cytoskeletal KS08_04320 PF06798 PrkA serine protein kinase C-terminal domain KS08_04320 PF08298 PrkA AAA domain KS08_04325 PF04285 Protein of unknown function (DUF444) KS08_04330 PF01047 MarR family KS08_04340 PF07690 Major Facilitator Superfamily KS08_04345 PF03358 NADPH-dependent FMN reductase KS08_04360 PF00392 Bacterial regulatory proteins, gntR family KS08_04365 PF00005 ABC transporter KS08_04370 PF00005 ABC transporter KS08_04375 PF12679 ABC-2 family transporter protein KS08_04380 PF00313 'Cold-shock' DNA-binding domain KS08_04385 PF03180 NLPA lipoprotein KS08_04390 PF00990 Diguanylate cyclase, GGDEF domain KS08_04390 PF07694 5TMR of 5TMR-LYT KS08_04395 PF00375 Sodium:dicarboxylate symporter family KS08_04400 PF01546 Peptidase family M20/M25/M40 KS08_04410 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) KS08_04420 PF07875 Coat F domain KS08_04425 PF02872 5'-nucleotidase, C-terminal domain KS08_04425 PF00746 LPXTG cell wall anchor motif KS08_04425 PF00149 Calcineurin-like phosphoesterase KS08_04425 PF00565 Staphylococcal nuclease homologue KS08_04430 PF04203 Sortase domain KS08_04435 PF01479 S4 domain KS08_04435 PF00849 RNA pseudouridylate synthase KS08_04440 PF17326 Family of unknown function (DUF5365) KS08_04445 PF00571 CBS domain KS08_04450 PF13419 Haloacid dehalogenase-like hydrolase KS08_04455 PF00583 Acetyltransferase (GNAT) family KS08_04455 PF00795 Carbon-nitrogen hydrolase KS08_04460 PF00202 Aminotransferase class-III KS08_04465 PF04309 Glycerol-3-phosphate responsive antiterminator KS08_04470 PF00230 Major intrinsic protein KS08_04475 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KS08_04475 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KS08_04480 PF01266 FAD dependent oxidoreductase KS08_04480 PF16901 C-terminal domain of alpha-glycerophosphate oxidase KS08_04485 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III KS08_04485 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain KS08_04485 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I KS08_04485 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II KS08_04490 PF13185 GAF domain KS08_04490 PF07730 Histidine kinase KS08_04495 PF00196 Bacterial regulatory proteins, luxR family KS08_04495 PF00072 Response regulator receiver domain KS08_04500 PF03358 NADPH-dependent FMN reductase KS08_04505 PF14148 YhdB-like protein KS08_04510 PF13028 Protein of unknown function (DUF3889) KS08_04515 PF01476 LysM domain KS08_04515 PF00877 NlpC/P60 family KS08_04520 PF02082 Transcriptional regulator KS08_04525 PF05552 Conserved TM helix KS08_04530 PF04293 SpoVR like protein KS08_04535 PF00245 Alkaline phosphatase KS08_04540 PF00877 NlpC/P60 family KS08_04540 PF01476 LysM domain KS08_04545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KS08_04545 PF03466 LysR substrate binding domain KS08_04550 PF00285 Citrate synthase, C-terminal domain KS08_04560 PF13520 Amino acid permease KS08_04565 PF00209 Sodium:neurotransmitter symporter family KS08_04570 PF17453 Sigma-M inhibitor KS08_04575 PF13800 Sigma factor regulator N-terminal KS08_04575 PF13791 Sigma factor regulator C-terminal KS08_04580 PF08281 Sigma-70, region 4 KS08_04580 PF04542 Sigma-70 region 2 KS08_04585 PF01553 Acyltransferase KS08_04590 PF01595 Cyclin M transmembrane N-terminal domain KS08_04590 PF03471 Transporter associated domain KS08_04590 PF00571 CBS domain KS08_04595 PF13411 MerR HTH family regulatory protein KS08_04600 PF00155 Aminotransferase class I and II KS08_04605 PF00109 Beta-ketoacyl synthase, N-terminal domain KS08_04605 PF02801 Beta-ketoacyl synthase, C-terminal domain KS08_04610 PF00571 CBS domain KS08_04610 PF03471 Transporter associated domain KS08_04610 PF01595 Cyclin M transmembrane N-terminal domain KS08_04615 PF02537 CrcB-like protein, Camphor Resistance (CrcB) KS08_04620 PF02537 CrcB-like protein, Camphor Resistance (CrcB) KS08_04625 PF03009 Glycerophosphoryl diester phosphodiesterase family KS08_04630 PF17444 Uncharacterized YhdX-like KS08_04635 PF00924 Mechanosensitive ion channel KS08_04640 PF02146 Sir2 family KS08_04645 PF01522 Polysaccharide deacetylase KS08_04650 PF01063 Amino-transferase class IV KS08_04655 PF00440 Bacterial regulatory proteins, tetR family KS08_04655 PF13977 BetI-type transcriptional repressor, C-terminal KS08_04665 PF00582 Universal stress protein family KS08_04670 PF00005 ABC transporter KS08_04670 PF00664 ABC transporter transmembrane region KS08_04675 PF00664 ABC transporter transmembrane region KS08_04675 PF00005 ABC transporter KS08_04680 PF13460 NAD(P)H-binding KS08_04685 PF00269 Small, acid-soluble spore proteins, alpha/beta type KS08_04695 PF17277 Family of unknown function (DUF5342) KS08_04700 PF14398 YheC/D like ATP-grasp KS08_04705 PF14398 YheC/D like ATP-grasp KS08_04710 PF04286 Protein of unknown function (DUF445) KS08_04715 PF06133 Control of competence regulator ComK, YlbF/YmcA KS08_04725 PF04055 Radical SAM superfamily KS08_04730 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) KS08_04735 PF00999 Sodium/hydrogen exchanger family KS08_04740 PF02080 TrkA-C domain KS08_04750 PF00378 Enoyl-CoA hydratase/isomerase KS08_04755 PF14120 YhzD-like protein KS08_04760 PF13732 Domain of unknown function (DUF4162) KS08_04760 PF00005 ABC transporter KS08_04770 PF00149 Calcineurin-like phosphoesterase KS08_04775 PF13514 AAA domain KS08_04780 PF01966 HD domain KS08_04785 PF14147 Sporulation protein YhaL KS08_04795 PF09680 Family of unknown function KS08_04800 PF09680 Family of unknown function KS08_04810 PF11667 Putative zincin peptidase KS08_04815 PF08963 Protein of unknown function (DUF1878) KS08_04820 PF01047 MarR family KS08_04825 PF12732 YtxH-like protein KS08_04835 PF17099 Tryptophan transporter TrpP KS08_04840 PF00266 Aminotransferase class-V KS08_04845 PF01230 HIT domain KS08_04850 PF00005 ABC transporter KS08_04855 PF05975 Bacterial ABC transporter protein EcsB KS08_04860 PF12787 EcsC protein family KS08_04865 PF07687 Peptidase dimerisation domain KS08_04865 PF01546 Peptidase family M20/M25/M40 KS08_04875 PF03992 Antibiotic biosynthesis monooxygenase KS08_04880 PF00912 Transglycosylase KS08_04880 PF00905 Penicillin binding protein transpeptidase domain KS08_04885 PF01208 Uroporphyrinogen decarboxylase (URO-D) KS08_04900 PF17932 Tetracyclin repressor-like, C-terminal domain KS08_04900 PF00440 Bacterial regulatory proteins, tetR family KS08_04910 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KS08_04910 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KS08_04920 PF05343 M42 glutamyl aminopeptidase KS08_04925 PF00375 Sodium:dicarboxylate symporter family KS08_04930 PF14149 YhfH-like protein KS08_04935 PF12706 Beta-lactamase superfamily domain KS08_04940 PF10437 Bacterial lipoate protein ligase C-terminus KS08_04940 PF03099 Biotin/lipoate A/B protein ligase family KS08_04945 PF13460 NAD(P)H-binding KS08_04950 PF13193 AMP-binding enzyme C-terminal domain KS08_04950 PF00501 AMP-binding enzyme KS08_04960 PF01435 Peptidase family M48 KS08_04960 PF16491 CAAX prenyl protease N-terminal, five membrane helices KS08_04965 PF00082 Subtilase family KS08_04965 PF05922 Peptidase inhibitor I9 KS08_04970 PF01497 Periplasmic binding protein KS08_04975 PF00300 Histidine phosphatase superfamily (branch 1) KS08_04980 PF02803 Thiolase, C-terminal domain KS08_04980 PF00108 Thiolase, N-terminal domain KS08_04985 PF00501 AMP-binding enzyme KS08_04985 PF13193 AMP-binding enzyme C-terminal domain KS08_04990 PF02632 BioY family KS08_04995 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KS08_05000 PF01266 FAD dependent oxidoreductase KS08_05000 PF00355 Rieske [2Fe-2S] domain KS08_05010 PF08858 IDEAL domain KS08_05015 PF06338 ComK protein KS08_05020 PF08818 Domain of unknown function (DU1801) KS08_05030 PF15493 Domain of unknown function, YrpD KS08_05035 PF05901 Excalibur calcium-binding domain KS08_05040 PF01906 Putative heavy-metal-binding KS08_05045 PF00474 Sodium:solute symporter family KS08_05050 PF11755 Protein of unknown function (DUF3311) KS08_05060 PF09335 SNARE associated Golgi protein KS08_05065 PF10502 Signal peptidase, peptidase S26 KS08_05070 PF01494 FAD binding domain KS08_05075 PF01047 MarR family KS08_05080 PF05145 Transition state regulatory protein AbrB KS08_05085 PF07690 Major Facilitator Superfamily KS08_05090 PF08361 MAATS-type transcriptional repressor, C-terminal region KS08_05090 PF00440 Bacterial regulatory proteins, tetR family KS08_05095 PF02915 Rubrerythrin KS08_05100 PF04239 Protein of unknown function (DUF421) KS08_05105 PF12705 PD-(D/E)XK nuclease superfamily KS08_05105 PF13361 UvrD-like helicase C-terminal domain KS08_05110 PF12705 PD-(D/E)XK nuclease superfamily KS08_05110 PF00580 UvrD/REP helicase N-terminal domain KS08_05110 PF13361 UvrD-like helicase C-terminal domain KS08_05115 PF12320 Type 5 capsule protein repressor C-terminal domain KS08_05115 PF00149 Calcineurin-like phosphoesterase KS08_05120 PF13476 AAA domain KS08_05130 PF10676 Spore germination protein gerPA/gerPF KS08_05135 PF10970 Spore germination protein GerPE KS08_05145 PF10737 Spore germination protein GerPC KS08_05150 PF10803 Spore germination GerPB KS08_05155 PF10676 Spore germination protein gerPA/gerPF KS08_05160 PF09388 Spo0E like sporulation regulatory protein KS08_05165 PF01557 Fumarylacetoacetate (FAA) hydrolase family KS08_05170 PF07457 Protein of unknown function (DUF1516) KS08_05175 PF00082 Subtilase family KS08_05175 PF17936 Bacterial Ig domain KS08_05180 PF10949 Protein of unknown function (DUF2777) KS08_05185 PF00733 Asparagine synthase KS08_05185 PF13537 Glutamine amidotransferase domain KS08_05195 PF01554 MatE KS08_05200 PF12833 Helix-turn-helix domain KS08_05200 PF02311 AraC-like ligand binding domain KS08_05205 PF00356 Bacterial regulatory proteins, lacI family KS08_05210 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KS08_05210 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KS08_05215 PF05163 DinB family KS08_05220 PF01810 LysE type translocator KS08_05225 PF00155 Aminotransferase class I and II KS08_05225 PF00392 Bacterial regulatory proteins, gntR family KS08_05230 PF13599 Pentapeptide repeats (9 copies) KS08_05235 PF13673 Acetyltransferase (GNAT) domain KS08_05240 PF02219 Methylenetetrahydrofolate reductase KS08_05240 PF02574 Homocysteine S-methyltransferase KS08_05245 PF04461 Protein of unknown function (DUF520) KS08_05250 PF13509 S1 domain KS08_05250 PF17783 CvfB-like winged helix domain KS08_05260 PF12729 Four helix bundle sensory module for signal transduction KS08_05260 PF00672 HAMP domain KS08_05260 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KS08_05265 PF00067 Cytochrome P450 KS08_05270 PF02645 Uncharacterised protein, DegV family COG1307 KS08_05275 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KS08_05275 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KS08_05280 PF12690 Intracellular proteinase inhibitor KS08_05285 PF12758 Protein of unknown function (DUF3813) KS08_05300 PF00326 Prolyl oligopeptidase family KS08_05305 PF01883 Iron-sulfur cluster assembly protein KS08_05310 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KS08_05315 PF01565 FAD binding domain KS08_05320 PF07690 Major Facilitator Superfamily KS08_05325 PF01118 Semialdehyde dehydrogenase, NAD binding domain KS08_05325 PF02774 Semialdehyde dehydrogenase, dimerisation domain KS08_05330 PF01960 ArgJ family KS08_05335 PF00696 Amino acid kinase family KS08_05340 PF00202 Aminotransferase class-III KS08_05345 PF00117 Glutamine amidotransferase class-I KS08_05345 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain KS08_05350 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain KS08_05350 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KS08_05355 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KS08_05355 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KS08_05360 PF14168 YjzC-like protein KS08_05365 PF11151 Protein of unknown function (DUF2929) KS08_05380 PF02608 ABC transporter substrate-binding protein PnrA-like KS08_05385 PF10815 ComZ KS08_05395 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal KS08_05395 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III KS08_05400 PF00109 Beta-ketoacyl synthase, N-terminal domain KS08_05400 PF02801 Beta-ketoacyl synthase, C-terminal domain KS08_05405 PF10026 Predicted Zn-dependent protease (DUF2268) KS08_05410 PF00005 ABC transporter KS08_05410 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KS08_05415 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KS08_05415 PF00005 ABC transporter KS08_05420 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KS08_05425 PF00528 Binding-protein-dependent transport system inner membrane component KS08_05430 PF00528 Binding-protein-dependent transport system inner membrane component KS08_05430 PF12911 N-terminal TM domain of oligopeptide transport permease C KS08_05435 PF12227 Protein of unknown function (DUF3603) KS08_05440 PF00579 tRNA synthetases class I (W and Y) KS08_05445 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KS08_05450 PF00528 Binding-protein-dependent transport system inner membrane component KS08_05455 PF00528 Binding-protein-dependent transport system inner membrane component KS08_05455 PF12911 N-terminal TM domain of oligopeptide transport permease C KS08_05460 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KS08_05460 PF00005 ABC transporter KS08_05465 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KS08_05465 PF00005 ABC transporter KS08_05475 PF13508 Acetyltransferase (GNAT) domain KS08_05480 PF03960 ArsC family KS08_05485 PF03741 Integral membrane protein TerC family KS08_05490 PF05389 Negative regulator of genetic competence (MecA) KS08_05495 PF06054 Competence protein CoiA-like family KS08_05500 PF08439 Oligopeptidase F KS08_05500 PF01432 Peptidase family M3 KS08_05520 PF01152 Bacterial-like globin KS08_05525 PF01464 Transglycosylase SLT domain KS08_05530 PF01928 CYTH domain KS08_05540 PF04607 Region found in RelA / SpoT proteins KS08_05545 PF01513 ATP-NAD kinase KS08_05550 PF00849 RNA pseudouridylate synthase KS08_05555 PF00149 Calcineurin-like phosphoesterase KS08_05560 PF02254 TrkA-N domain KS08_05560 PF02080 TrkA-C domain KS08_05560 PF00999 Sodium/hydrogen exchanger family KS08_05565 PF03070 TENA/THI-4/PQQC family KS08_05570 PF02581 Thiamine monophosphate synthase KS08_05575 PF01266 FAD dependent oxidoreductase KS08_05580 PF02597 ThiS family KS08_05585 PF05690 Thiazole biosynthesis protein ThiG KS08_05590 PF00899 ThiF family KS08_05595 PF08543 Phosphomethylpyrimidine kinase KS08_05605 PF14153 Spore coat protein CotO KS08_05610 PF10612 Spore coat protein Z KS08_05615 PF10612 Spore coat protein Z KS08_05620 PF07552 Spore Coat Protein X and V domain KS08_05630 PF07552 Spore Coat Protein X and V domain KS08_05635 PF07098 Protein of unknown function (DUF1360) KS08_05655 PF14069 Stage VI sporulation protein F KS08_05660 PF13361 UvrD-like helicase C-terminal domain KS08_05660 PF00580 UvrD/REP helicase N-terminal domain KS08_05670 PF00753 Metallo-beta-lactamase superfamily KS08_05680 PF00005 ABC transporter KS08_05690 PF13673 Acetyltransferase (GNAT) domain KS08_05700 PF00756 Putative esterase KS08_05705 PF01053 Cys/Met metabolism PLP-dependent enzyme KS08_05710 PF01053 Cys/Met metabolism PLP-dependent enzyme KS08_05720 PF00589 Phage integrase family KS08_05720 PF14659 Phage integrase, N-terminal SAM-like domain KS08_05725 PF06114 IrrE N-terminal-like domain KS08_05730 PF14470 Bacterial PH domain KS08_05735 PF05901 Excalibur calcium-binding domain KS08_05735 PF00565 Staphylococcal nuclease homologue KS08_05740 PF01381 Helix-turn-helix KS08_05755 PF01381 Helix-turn-helix KS08_05760 PF17448 Uncharacterized YqaH-like KS08_05765 PF09466 Hypothetical protein Yqai KS08_05790 PF07261 Replication initiation and membrane attachment KS08_05795 PF01695 IstB-like ATP binding protein KS08_05805 PF05866 Endodeoxyribonuclease RusA KS08_05810 PF17356 Phage-like element PBSX protein XtrA KS08_05845 PF02368 Bacterial Ig-like domain (group 2) KS08_05895 PF10668 Phage terminase small subunit KS08_05970 PF01464 Transglycosylase SLT domain KS08_06020 PF09693 Phage uncharacterised protein (Phage_XkdX) KS08_06025 PF10779 Haemolysin XhlA KS08_06030 PF04688 SPP1 phage holin KS08_06035 PF01471 Putative peptidoglycan binding domain KS08_06035 PF01510 N-acetylmuramoyl-L-alanine amidase KS08_06060 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH KS08_06060 PF04740 LXG domain of WXG superfamily KS08_06095 PF09346 SMI1 / KNR4 family (SUKH-1) KS08_06120 PF07693 KAP family P-loop domain KS08_06125 PF07693 KAP family P-loop domain KS08_06130 PF08863 YolD-like protein KS08_06135 PF11799 impB/mucB/samB family C-terminal domain KS08_06135 PF11798 IMS family HHH motif KS08_06135 PF00817 impB/mucB/samB family KS08_06150 PF14037 YoqO-like protein KS08_06170 PF18593 CdiI immunity protein KS08_06185 PF03992 Antibiotic biosynthesis monooxygenase KS08_06190 PF07690 Major Facilitator Superfamily KS08_06195 PF01047 MarR family KS08_06200 PF07745 Glycosyl hydrolase family 53 KS08_06205 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KS08_06205 PF02378 Phosphotransferase system, EIIC KS08_06210 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit KS08_06215 PF00232 Glycosyl hydrolase family 1 KS08_06220 PF00455 DeoR C terminal sensor domain KS08_06220 PF08220 DeoR-like helix-turn-helix domain KS08_06240 PF02308 MgtC family KS08_06245 PF14070 Putative motility protein KS08_06250 PF10990 Protein of unknown function (DUF2809) KS08_06255 PF14172 Domain of unknown function (DUF4309) KS08_06260 PF12838 4Fe-4S dicluster domain KS08_06260 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KS08_06260 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region KS08_06260 PF00384 Molybdopterin oxidoreductase KS08_06260 PF01568 Molydopterin dinucleotide binding domain KS08_06265 PF07849 Protein of unknown function (DUF1641) KS08_06270 PF00067 Cytochrome P450 KS08_06275 PF04101 Glycosyltransferase family 28 C-terminal domain KS08_06285 PF02602 Uroporphyrinogen-III synthase HemD KS08_06290 PF03649 Uncharacterised protein family (UPF0014) KS08_06295 PF00005 ABC transporter KS08_06300 PF13536 Putative multidrug resistance efflux transporter KS08_06310 PF07849 Protein of unknown function (DUF1641) KS08_06315 PF07992 Pyridine nucleotide-disulphide oxidoreductase KS08_06320 PF02614 Glucuronate isomerase KS08_06325 PF00356 Bacterial regulatory proteins, lacI family KS08_06330 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus KS08_06330 PF08666 SAF domain KS08_06335 PF00072 Response regulator receiver domain KS08_06335 PF00486 Transcriptional regulatory protein, C terminal KS08_06340 PF00512 His Kinase A (phospho-acceptor) domain KS08_06340 PF00672 HAMP domain KS08_06340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS08_06350 PF01925 Sulfite exporter TauE/SafE KS08_06355 PF05163 DinB family KS08_06360 PF18801 response regulator aspartate phosphatase H, N terminal KS08_06370 PF01476 LysM domain KS08_06370 PF01510 N-acetylmuramoyl-L-alanine amidase KS08_06370 PF01471 Putative peptidoglycan binding domain KS08_06375 PF08000 Bacterial PH domain KS08_06380 PF05908 Poly-gamma-glutamate hydrolase KS08_06385 PF06114 IrrE N-terminal-like domain KS08_06390 PF01381 Helix-turn-helix KS08_06405 PF01695 IstB-like ATP binding protein KS08_06420 PF17356 Phage-like element PBSX protein XtrA KS08_06425 PF08281 Sigma-70, region 4 KS08_06430 PF03592 Terminase small subunit KS08_06430 PF10668 Phage terminase small subunit KS08_06435 PF17288 Terminase RNAseH like domain KS08_06435 PF04466 Phage terminase large subunit KS08_06440 PF04860 Phage portal protein KS08_06445 PF14550 Putative phage serine protease XkdF KS08_06450 PF05065 Phage capsid family KS08_06455 PF11436 Protein of unknown function (DUF3199) KS08_06460 PF12206 Domain of unknown function (DUF3599) KS08_06465 PF04883 Bacteriophage HK97-gp10, putative tail-component KS08_06480 PF17482 Phage tail sheath C-terminal domain KS08_06480 PF04984 Phage tail sheath protein subtilisin-like domain KS08_06480 PF17481 Phage tail sheath protein beta-sandwich domain KS08_06485 PF09393 Phage tail tube protein KS08_06490 PF08890 Phage XkdN-like tail assembly chaperone protein, TAC KS08_06500 PF01464 Transglycosylase SLT domain KS08_06500 PF01464 Transglycosylase SLT domain KS08_06500 PF01464 Transglycosylase SLT domain KS08_06505 PF01476 LysM domain KS08_06515 PF10844 Protein of unknown function (DUF2577) KS08_06520 PF10934 Protein of unknown function (DUF2634) KS08_06525 PF04865 Baseplate J-like protein KS08_06530 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) KS08_06545 PF09636 XkdW protein KS08_06550 PF09693 Phage uncharacterised protein (Phage_XkdX) KS08_06560 PF10779 Haemolysin XhlA KS08_06565 PF04688 SPP1 phage holin KS08_06570 PF01471 Putative peptidoglycan binding domain KS08_06570 PF01510 N-acetylmuramoyl-L-alanine amidase KS08_06570 PF01476 LysM domain KS08_06575 PF14185 Antitoxin SpoIISB, type II toxin-antitoxin system KS08_06580 PF14171 Toxin SpoIISA, type II toxin-antitoxin system KS08_06585 PF01384 Phosphate transporter family KS08_06590 PF01865 Protein of unknown function DUF47 KS08_06595 PF13520 Amino acid permease KS08_06600 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KS08_06605 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase KS08_06610 PF00535 Glycosyl transferase family 2 KS08_06615 PF13180 PDZ domain KS08_06620 PF07690 Major Facilitator Superfamily KS08_06625 PF04951 D-aminopeptidase KS08_06630 PF00528 Binding-protein-dependent transport system inner membrane component KS08_06635 PF12911 N-terminal TM domain of oligopeptide transport permease C KS08_06635 PF00528 Binding-protein-dependent transport system inner membrane component KS08_06640 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KS08_06640 PF00005 ABC transporter KS08_06645 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle KS08_06650 PF17676 LD-carboxypeptidase C-terminal domain KS08_06650 PF02016 LD-carboxypeptidase N-terminal domain KS08_06655 PF13378 Enolase C-terminal domain-like KS08_06655 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KS08_06660 PF00877 NlpC/P60 family KS08_06665 PF08352 Oligopeptide/dipeptide transporter, C-terminal region KS08_06665 PF00005 ABC transporter KS08_06670 PF10282 Lactonase, 7-bladed beta-propeller KS08_06680 PF03061 Thioesterase superfamily KS08_06685 PF13302 Acetyltransferase (GNAT) domain KS08_06690 PF00893 Small Multidrug Resistance protein KS08_06695 PF00893 Small Multidrug Resistance protein KS08_06705 PF01472 PUA domain KS08_06705 PF00696 Amino acid kinase family KS08_06710 PF00171 Aldehyde dehydrogenase family KS08_06715 PF02566 OsmC-like protein KS08_06720 PF01047 MarR family KS08_06725 PF02566 OsmC-like protein KS08_06740 PF13181 Tetratricopeptide repeat KS08_06740 PF00535 Glycosyl transferase family 2 KS08_06755 PF00027 Cyclic nucleotide-binding domain KS08_06760 PF08267 Cobalamin-independent synthase, N-terminal domain KS08_06760 PF01717 Cobalamin-independent synthase, Catalytic domain KS08_06765 PF00082 Subtilase family KS08_06770 PF01740 STAS domain KS08_06775 PF02361 Cobalt transport protein KS08_06780 PF00005 ABC transporter KS08_06785 PF09819 ABC-type cobalt transport system, permease component KS08_06790 PF01476 LysM domain KS08_06790 PF00704 Glycosyl hydrolases family 18 KS08_06795 PF11132 Transcriptional regulator protein (SplA) KS08_06805 PF01769 Divalent cation transporter KS08_06805 PF03448 MgtE intracellular N domain KS08_06805 PF00571 CBS domain KS08_06810 PF13411 MerR HTH family regulatory protein KS08_06825 PF01047 MarR family KS08_06835 PF01068 ATP dependent DNA ligase domain KS08_06840 PF02735 Ku70/Ku80 beta-barrel domain KS08_06845 PF00990 Diguanylate cyclase, GGDEF domain KS08_06845 PF00563 EAL domain KS08_06845 PF03707 Bacterial signalling protein N terminal repeat KS08_06850 PF09335 SNARE associated Golgi protein KS08_06855 PF03741 Integral membrane protein TerC family KS08_06860 PF04542 Sigma-70 region 2 KS08_06865 PF12791 Anti-sigma factor N-terminus KS08_06870 PF00269 Small, acid-soluble spore proteins, alpha/beta type KS08_06875 PF08876 Domain of unknown function (DUF1836) KS08_06880 PF01435 Peptidase family M48 KS08_06885 PF02386 Cation transport protein KS08_06905 PF01757 Acyltransferase family KS08_06910 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS08_06910 PF13426 PAS domain KS08_06910 PF13188 PAS domain KS08_06910 PF00989 PAS fold KS08_06910 PF00512 His Kinase A (phospho-acceptor) domain KS08_06915 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KS08_06915 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KS08_06920 PF01008 Initiation factor 2 subunit family KS08_06925 PF01636 Phosphotransferase enzyme family KS08_06930 PF00795 Carbon-nitrogen hydrolase KS08_06935 PF00155 Aminotransferase class I and II KS08_06940 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain KS08_06940 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain KS08_06950 PF00596 Class II Aldolase and Adducin N-terminal domain KS08_06955 PF03079 ARD/ARD' family KS08_06960 PF09388 Spo0E like sporulation regulatory protein KS08_06965 PF00512 His Kinase A (phospho-acceptor) domain KS08_06965 PF02743 Cache domain KS08_06965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS08_06970 PF01047 MarR family KS08_06975 PF00691 OmpA family KS08_06975 PF13677 Membrane MotB of proton-channel complex MotA/MotB KS08_06980 PF01618 MotA/TolQ/ExbB proton channel family KS08_06985 PF07724 AAA domain (Cdc48 subfamily) KS08_06985 PF00004 ATPase family associated with various cellular activities (AAA) KS08_06985 PF17871 AAA lid domain KS08_06985 PF10431 C-terminal, D2-small domain, of ClpB protein KS08_07000 PF06508 Queuosine biosynthesis protein QueC KS08_07005 PF01242 6-pyruvoyl tetrahydropterin synthase KS08_07010 PF04055 Radical SAM superfamily KS08_07015 PF14489 QueF-like protein KS08_07020 PF11514 Protein of unknown function (DUF3219) KS08_07025 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) KS08_07035 PF07486 Cell Wall Hydrolase KS08_07040 PF01943 Polysaccharide biosynthesis protein KS08_07045 PF00578 AhpC/TSA family KS08_07055 PF01321 Creatinase/Prolidase N-terminal domain KS08_07055 PF00557 Metallopeptidase family M24 KS08_07065 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family KS08_07065 PF00356 Bacterial regulatory proteins, lacI family KS08_07070 PF03123 CAT RNA binding domain KS08_07070 PF00874 PRD domain KS08_07075 PF02378 Phosphotransferase system, EIIC KS08_07075 PF00367 phosphotransferase system, EIIB KS08_07075 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 KS08_07080 PF00381 PTS HPr component phosphorylation site KS08_07085 PF05524 PEP-utilising enzyme, N-terminal KS08_07085 PF02896 PEP-utilising enzyme, TIM barrel domain KS08_07085 PF00391 PEP-utilising enzyme, mobile domain KS08_07090 PF11132 Transcriptional regulator protein (SplA) KS08_07100 PF00672 HAMP domain KS08_07100 PF02743 Cache domain KS08_07100 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KS08_07105 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase KS08_07105 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KS08_07115 PF00188 Cysteine-rich secretory protein family KS08_07120 PF03717 Penicillin-binding Protein dimerisation domain KS08_07120 PF00905 Penicillin binding protein transpeptidase domain KS08_07125 PF08447 PAS fold KS08_07125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS08_07125 PF00989 PAS fold KS08_07125 PF00512 His Kinase A (phospho-acceptor) domain KS08_07130 PF00155 Aminotransferase class I and II KS08_07140 PF01584 CheW-like domain KS08_07140 PF00072 Response regulator receiver domain KS08_07145 PF14177 YkyB-like protein KS08_07150 PF07690 Major Facilitator Superfamily KS08_07155 PF03734 L,D-transpeptidase catalytic domain KS08_07155 PF01476 LysM domain KS08_07160 PF10518 TAT (twin-arginine translocation) pathway signal sequence KS08_07160 PF00149 Calcineurin-like phosphoesterase KS08_07175 PF00563 EAL domain KS08_07175 PF10388 EAL-domain associated signalling protein domain KS08_07180 PF08796 Protein of unknown function (DUF1797) KS08_07185 PF04308 Ribonuclease H-like KS08_07190 PF14156 Antirepressor AbbA KS08_07200 PF03466 LysR substrate binding domain KS08_07200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KS08_07205 PF00258 Flavodoxin KS08_07215 PF00258 Flavodoxin KS08_07220 PF00132 Bacterial transferase hexapeptide (six repeats) KS08_07220 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal KS08_07220 PF14602 Hexapeptide repeat of succinyl-transferase KS08_07225 PF01546 Peptidase family M20/M25/M40 KS08_07225 PF07687 Peptidase dimerisation domain KS08_07230 PF03698 Uncharacterised protein family (UPF0180) KS08_07235 PF00924 Mechanosensitive ion channel KS08_07245 PF00578 AhpC/TSA family KS08_07260 PF12804 MobA-like NTP transferase domain KS08_07265 PF00899 ThiF family KS08_07270 PF00994 Probable molybdopterin binding domain KS08_07270 PF03454 MoeA C-terminal region (domain IV) KS08_07270 PF03453 MoeA N-terminal region (domain I and II) KS08_07275 PF03205 Molybdopterin guanine dinucleotide synthesis protein B KS08_07280 PF02391 MoaE protein KS08_07285 PF02597 ThiS family KS08_07290 PF04893 Yip1 domain KS08_07295 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion KS08_07300 PF00005 ABC transporter KS08_07305 PF02687 FtsX-like permease family KS08_07305 PF12704 MacB-like periplasmic core domain KS08_07310 PF08220 DeoR-like helix-turn-helix domain KS08_07310 PF00455 DeoR C terminal sensor domain KS08_07315 PF00294 pfkB family carbohydrate kinase KS08_07320 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KS08_07320 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KS08_07325 PF10502 Signal peptidase, peptidase S26 KS08_07335 PF12848 ABC transporter KS08_07335 PF00005 ABC transporter KS08_07340 PF08546 Ketopantoate reductase PanE/ApbA C terminal KS08_07340 PF02558 Ketopantoate reductase PanE/ApbA KS08_07345 PF02073 Thermophilic metalloprotease (M29) KS08_07350 PF17447 Uncharacterized YkpC-like KS08_07360 PF18277 AbrB C-terminal domain KS08_07360 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin KS08_07365 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS08_07365 PF00512 His Kinase A (phospho-acceptor) domain KS08_07365 PF00989 PAS fold KS08_07370 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like KS08_07375 PF02254 TrkA-N domain KS08_07375 PF02080 TrkA-C domain KS08_07380 PF01979 Amidohydrolase family KS08_07380 PF13382 Adenine deaminase C-terminal domain KS08_07385 PF00753 Metallo-beta-lactamase superfamily KS08_07385 PF17770 Ribonuclease J C-terminal domain KS08_07385 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain KS08_07400 PF01327 Polypeptide deformylase KS08_07410 PF10368 Putative cell-wall binding lipoprotein KS08_07415 PF00676 Dehydrogenase E1 component KS08_07420 PF02780 Transketolase, C-terminal domain KS08_07420 PF02779 Transketolase, pyrimidine binding domain KS08_07425 PF02817 e3 binding domain KS08_07425 PF00364 Biotin-requiring enzyme KS08_07425 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KS08_07430 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KS08_07430 PF07992 Pyridine nucleotide-disulphide oxidoreductase KS08_07440 PF01522 Polysaccharide deacetylase KS08_07440 PF00457 Glycosyl hydrolases family 11 KS08_07440 PF03422 Carbohydrate binding module (family 6) KS08_07445 PF01276 Orn/Lys/Arg decarboxylase, major domain KS08_07445 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain KS08_07450 PF05256 Uncharacterised protein family (UPF0223) KS08_07455 PF06335 Protein of unknown function (DUF1054) KS08_07465 PF00459 Inositol monophosphatase family KS08_07470 PF00583 Acetyltransferase (GNAT) family KS08_07475 PF02868 Thermolysin metallopeptidase, alpha-helical domain KS08_07475 PF01447 Thermolysin metallopeptidase, catalytic domain KS08_07475 PF07504 Fungalysin/Thermolysin Propeptide Motif KS08_07475 PF03413 Peptidase propeptide and YPEB domain KS08_07485 PF13490 Putative zinc-finger KS08_07495 PF17259 Family of unknown function (DUF5325) KS08_07505 PF14036 YlaH-like protein KS08_07510 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) KS08_07515 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) KS08_07520 PF13638 PIN domain KS08_07520 PF02562 PhoH-like protein KS08_07530 PF04960 Glutaminase KS08_07535 PF07408 Protein of unknown function (DUF1507) KS08_07540 PF01098 Cell cycle protein KS08_07545 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KS08_07545 PF02436 Conserved carboxylase domain KS08_07545 PF00364 Biotin-requiring enzyme KS08_07545 PF00289 Biotin carboxylase, N-terminal domain KS08_07545 PF02785 Biotin carboxylase C-terminal domain KS08_07545 PF00682 HMGL-like KS08_07550 PF02628 Cytochrome oxidase assembly protein KS08_07555 PF01040 UbiA prenyltransferase family KS08_07560 PF02790 Cytochrome C oxidase subunit II, transmembrane domain KS08_07560 PF00034 Cytochrome c KS08_07560 PF00116 Cytochrome C oxidase subunit II, periplasmic domain KS08_07565 PF00115 Cytochrome C and Quinol oxidase polypeptide I KS08_07570 PF00510 Cytochrome c oxidase subunit III KS08_07575 PF03626 Prokaryotic Cytochrome C oxidase subunit IV KS08_07580 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) KS08_07585 PF08868 YugN-like family KS08_07590 PF00571 CBS domain KS08_07595 PF14504 CAP-associated N-terminal KS08_07595 PF00188 Cysteine-rich secretory protein family KS08_07600 PF14071 Putative coat protein KS08_07605 PF14003 YlbE-like protein KS08_07610 PF06133 Control of competence regulator ComK, YlbF/YmcA KS08_07615 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) KS08_07625 PF01467 Cytidylyltransferase-like KS08_07630 PF07670 Nucleoside recognition KS08_07635 PF01734 Patatin-like phospholipase KS08_07640 PF05362 Lon protease (S16) C-terminal proteolytic domain KS08_07640 PF13180 PDZ domain KS08_07645 PF05636 HIGH Nucleotidyl Transferase KS08_07650 PF02620 Large ribosomal RNA subunit accumulation protein YceD KS08_07655 PF01783 Ribosomal L32p protein family KS08_07665 PF00583 Acetyltransferase (GNAT) family KS08_07670 PF02558 Ketopantoate reductase PanE/ApbA KS08_07670 PF08546 Ketopantoate reductase PanE/ApbA C terminal KS08_07675 PF10079 Bacillithiol biosynthesis BshC KS08_07680 PF02381 MraZ protein, putative antitoxin-like KS08_07685 PF01795 MraW methylase family KS08_07700 PF03717 Penicillin-binding Protein dimerisation domain KS08_07700 PF00905 Penicillin binding protein transpeptidase domain KS08_07700 PF03793 PASTA domain KS08_07705 PF02875 Mur ligase family, glutamate ligase domain KS08_07705 PF08245 Mur ligase middle domain KS08_07705 PF01225 Mur ligase family, catalytic domain KS08_07715 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 KS08_07715 PF00953 Glycosyl transferase family 4 KS08_07720 PF08245 Mur ligase middle domain KS08_07720 PF02875 Mur ligase family, glutamate ligase domain KS08_07725 PF01098 Cell cycle protein KS08_07730 PF03033 Glycosyltransferase family 28 N-terminal domain KS08_07730 PF04101 Glycosyltransferase family 28 C-terminal domain KS08_07735 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain KS08_07735 PF01565 FAD binding domain KS08_07740 PF08478 POTRA domain, FtsQ-type KS08_07750 PF02491 SHS2 domain inserted in FTSA KS08_07755 PF00091 Tubulin/FtsZ family, GTPase domain KS08_07755 PF12327 FtsZ family, C-terminal domain KS08_07760 PF00082 Subtilase family KS08_07760 PF05922 Peptidase inhibitor I9 KS08_07765 PF03419 Sporulation factor SpoIIGA KS08_07770 PF04545 Sigma-70, region 4 KS08_07770 PF04542 Sigma-70 region 2 KS08_07775 PF04539 Sigma-70 region 3 KS08_07775 PF04542 Sigma-70 region 2 KS08_07775 PF04545 Sigma-70, region 4 KS08_07780 PF00005 ABC transporter KS08_07785 PF07687 Peptidase dimerisation domain KS08_07785 PF01546 Peptidase family M20/M25/M40 KS08_07790 PF05239 PRC-barrel domain KS08_07800 PF01168 Alanine racemase, N-terminal domain KS08_07805 PF04472 Cell division protein SepF KS08_07810 PF02325 YGGT family KS08_07815 PF17774 Putative RNA-binding domain in YlmH KS08_07815 PF01479 S4 domain KS08_07820 PF05103 DivIVA protein KS08_07830 PF00133 tRNA synthetases class I (I, L, M and V) KS08_07830 PF08264 Anticodon-binding domain of tRNA KS08_07835 PF01258 Prokaryotic dksA/traR C4-type zinc finger KS08_07840 PF01252 Signal peptidase (SPase) II KS08_07845 PF00849 RNA pseudouridylate synthase KS08_07845 PF01479 S4 domain KS08_07850 PF00156 Phosphoribosyl transferase domain KS08_07855 PF00860 Permease family KS08_07860 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain KS08_07860 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain KS08_07865 PF01979 Amidohydrolase family KS08_07870 PF00117 Glutamine amidotransferase class-I KS08_07870 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain KS08_07875 PF02142 MGS-like domain KS08_07875 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain KS08_07875 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KS08_07880 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B KS08_07880 PF00175 Oxidoreductase NAD-binding domain KS08_07885 PF01180 Dihydroorotate dehydrogenase KS08_07890 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family KS08_07895 PF00156 Phosphoribosyl transferase domain KS08_07905 PF01507 Phosphoadenosine phosphosulfate reductase family KS08_07910 PF01384 Phosphate transporter family KS08_07915 PF14306 PUA-like domain KS08_07915 PF01747 ATP-sulfurylase KS08_07925 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases KS08_07930 PF01903 CbiX KS08_07940 PF09154 Domain of unknown function (DUF1939) KS08_07940 PF00128 Alpha amylase, catalytic domain KS08_07950 PF00689 Cation transporting ATPase, C-terminus KS08_07950 PF00690 Cation transporter/ATPase, N-terminus KS08_07955 PF03755 YicC-like family, N-terminal region KS08_07955 PF08340 Domain of unknown function (DUF1732) KS08_07960 PF04025 Domain of unknown function (DUF370) KS08_07965 PF00625 Guanylate kinase KS08_07970 PF01192 RNA polymerase Rpb6 KS08_07975 PF02441 Flavoprotein KS08_07975 PF04127 DNA / pantothenate metabolism flavoprotein KS08_07980 PF17764 3′ DNA-binding domain (3′BD) KS08_07980 PF00271 Helicase conserved C-terminal domain KS08_07980 PF18319 PriA DNA helicase Cys-rich region (CRR) domain KS08_07980 PF04851 Type III restriction enzyme, res subunit KS08_07980 PF18074 Primosomal protein N C-terminal domain KS08_07985 PF01327 Polypeptide deformylase KS08_07990 PF00551 Formyl transferase KS08_07990 PF02911 Formyl transferase, C-terminal domain KS08_07995 PF01029 NusB family KS08_07995 PF01189 16S rRNA methyltransferase RsmB/F KS08_08000 PF04055 Radical SAM superfamily KS08_08010 PF03793 PASTA domain KS08_08010 PF00069 Protein kinase domain KS08_08015 PF16745 RsgA N-terminal domain KS08_08015 PF03193 RsgA GTPase KS08_08020 PF00834 Ribulose-phosphate 3 epimerase family KS08_08025 PF04263 Thiamin pyrophosphokinase, catalytic domain KS08_08025 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain KS08_08030 PF08183 Stage V sporulation protein family KS08_08035 PF00830 Ribosomal L28 family KS08_08040 PF03780 Asp23 family, cell envelope-related function KS08_08045 PF13684 Dihydroxyacetone kinase family KS08_08045 PF02734 DAK2 domain KS08_08050 PF01842 ACT domain KS08_08050 PF03315 Serine dehydratase beta chain KS08_08055 PF03313 Serine dehydratase alpha chain KS08_08060 PF17191 RecG wedge domain KS08_08060 PF00271 Helicase conserved C-terminal domain KS08_08060 PF00270 DEAD/DEAH box helicase KS08_08065 PF03061 Thioesterase superfamily KS08_08070 PF02504 Fatty acid synthesis protein KS08_08075 PF00698 Acyl transferase domain KS08_08085 PF00550 Phosphopantetheine attachment site KS08_08090 PF00035 Double-stranded RNA binding motif KS08_08090 PF14622 Ribonuclease-III-like KS08_08095 PF06470 SMC proteins Flexible Hinge Domain KS08_08095 PF02463 RecF/RecN/SMC N terminal domain KS08_08100 PF02881 SRP54-type protein, helical bundle domain KS08_08100 PF00448 SRP54-type protein, GTPase domain KS08_08105 PF04297 Putative helix-turn-helix protein, YlxM / p13 like KS08_08110 PF02978 Signal peptide binding domain KS08_08110 PF02881 SRP54-type protein, helical bundle domain KS08_08110 PF00448 SRP54-type protein, GTPase domain KS08_08115 PF00886 Ribosomal protein S16 KS08_08125 PF11068 YlqD protein KS08_08130 PF01782 RimM N-terminal domain KS08_08130 PF05239 PRC-barrel domain KS08_08135 PF01746 tRNA (Guanine-1)-methyltransferase KS08_08140 PF01245 Ribosomal protein L19 KS08_08145 PF01926 50S ribosome-binding GTPase KS08_08150 PF01351 Ribonuclease HII KS08_08160 PF01312 FlhB HrpN YscU SpaS Family KS08_08165 PF08442 ATP-grasp domain KS08_08165 PF00549 CoA-ligase KS08_08170 PF02629 CoA binding domain KS08_08170 PF00549 CoA-ligase KS08_08175 PF02481 DNA recombination-mediator protein A KS08_08180 PF01396 Topoisomerase DNA binding C4 zinc finger KS08_08180 PF01131 DNA topoisomerase KS08_08180 PF01751 Toprim domain KS08_08185 PF01134 Glucose inhibited division protein A KS08_08190 PF00589 Phage integrase family KS08_08190 PF02899 Phage integrase, N-terminal SAM-like domain KS08_08195 PF00227 Proteasome subunit KS08_08200 PF00004 ATPase family associated with various cellular activities (AAA) KS08_08200 PF07724 AAA domain (Cdc48 subfamily) KS08_08200 PF10431 C-terminal, D2-small domain, of ClpB protein KS08_08205 PF06018 CodY GAF-like domain KS08_08205 PF08222 CodY helix-turn-helix domain KS08_08215 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KS08_08215 PF00460 Flagella basal body rod protein KS08_08220 PF02049 Flagellar hook-basal body complex protein FliE KS08_08225 PF08345 Flagellar M-ring protein C-terminal KS08_08225 PF01514 Secretory protein of YscJ/FliF family KS08_08230 PF14841 FliG middle domain KS08_08230 PF01706 FliG C-terminal domain KS08_08230 PF14842 FliG N-terminal domain KS08_08235 PF02108 Flagellar assembly protein FliH KS08_08240 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KS08_08240 PF02874 ATP synthase alpha/beta family, beta-barrel domain KS08_08240 PF18269 T3SS EscN ATPase C-terminal domain KS08_08245 PF02050 Flagellar FliJ protein KS08_08250 PF03448 MgtE intracellular N domain KS08_08255 PF02120 Flagellar hook-length control protein FliK KS08_08260 PF03963 Flagellar hook capping protein - N-terminal region KS08_08265 PF00460 Flagella basal body rod protein KS08_08265 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KS08_08270 PF06289 Flagellar and Swarming motility proteins KS08_08275 PF03748 Flagellar basal body-associated protein FliL KS08_08280 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term KS08_08280 PF02154 Flagellar motor switch protein FliM KS08_08285 PF04509 CheC-like family KS08_08285 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term KS08_08290 PF00072 Response regulator receiver domain KS08_08295 PF04347 Flagellar biosynthesis protein, FliO KS08_08300 PF00813 FliP family KS08_08305 PF01313 Bacterial export proteins, family 3 KS08_08310 PF01311 Bacterial export proteins, family 1 KS08_08315 PF01312 FlhB HrpN YscU SpaS Family KS08_08320 PF00771 FHIPEP family KS08_08325 PF00448 SRP54-type protein, GTPase domain KS08_08330 PF10609 NUBPL iron-transfer P-loop NTPase KS08_08335 PF01339 CheB methylesterase KS08_08335 PF00072 Response regulator receiver domain KS08_08340 PF01584 CheW-like domain KS08_08340 PF02895 Signal transducing histidine kinase, homodimeric domain KS08_08340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS08_08340 PF01627 Hpt domain KS08_08340 PF07194 P2 response regulator binding domain KS08_08345 PF01584 CheW-like domain KS08_08350 PF04509 CheC-like family KS08_08355 PF03975 CheD chemotactic sensory transduction KS08_08360 PF04545 Sigma-70, region 4 KS08_08360 PF04539 Sigma-70 region 3 KS08_08360 PF04542 Sigma-70 region 2 KS08_08370 PF00318 Ribosomal protein S2 KS08_08375 PF00889 Elongation factor TS KS08_08380 PF00696 Amino acid kinase family KS08_08385 PF01765 Ribosome recycling factor KS08_08390 PF01255 Putative undecaprenyl diphosphate synthase KS08_08400 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase KS08_08400 PF13288 DXP reductoisomerase C-terminal domain KS08_08400 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain KS08_08405 PF17820 PDZ domain KS08_08405 PF02163 Peptidase family M50 KS08_08410 PF04073 Aminoacyl-tRNA editing domain KS08_08410 PF03129 Anticodon binding domain KS08_08410 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KS08_08415 PF07733 Bacterial DNA polymerase III alpha NTPase domain KS08_08415 PF14480 DNA polymerase III polC-type N-terminus I KS08_08415 PF14579 Helix-hairpin-helix motif KS08_08415 PF02811 PHP domain KS08_08415 PF11490 DNA polymerase III polC-type N-terminus II KS08_08415 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KS08_08415 PF00929 Exonuclease KS08_08420 PF02576 RimP N-terminal domain KS08_08420 PF17384 RimP C-terminal SH3 domain KS08_08425 PF13184 NusA-like KH domain KS08_08425 PF00575 S1 RNA binding domain KS08_08425 PF08529 NusA N-terminal domain KS08_08430 PF04296 Protein of unknown function (DUF448) KS08_08435 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family KS08_08440 PF04760 Translation initiation factor IF-2, N-terminal region KS08_08440 PF11987 Translation-initiation factor 2 KS08_08440 PF00009 Elongation factor Tu GTP binding domain KS08_08445 PF04456 Protein of unknown function (DUF503) KS08_08450 PF02033 Ribosome-binding factor A KS08_08455 PF01509 TruB family pseudouridylate synthase (N terminal domain) KS08_08455 PF16198 tRNA pseudouridylate synthase B C-terminal domain KS08_08460 PF06574 FAD synthetase KS08_08460 PF01687 Riboflavin kinase KS08_08465 PF00312 Ribosomal protein S15 KS08_08470 PF00575 S1 RNA binding domain KS08_08470 PF00013 KH domain KS08_08470 PF01138 3' exoribonuclease family, domain 1 KS08_08470 PF03725 3' exoribonuclease family, domain 2 KS08_08470 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain KS08_08475 PF01522 Polysaccharide deacetylase KS08_08480 PF05193 Peptidase M16 inactive domain KS08_08480 PF00675 Insulinase (Peptidase family M16) KS08_08485 PF05239 PRC-barrel domain KS08_08490 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KS08_08490 PF16924 Dipicolinate synthase subunit A N-terminal domain KS08_08495 PF02441 Flavoprotein KS08_08500 PF01118 Semialdehyde dehydrogenase, NAD binding domain KS08_08500 PF02774 Semialdehyde dehydrogenase, dimerisation domain KS08_08505 PF00696 Amino acid kinase family KS08_08505 PF13840 ACT domain KS08_08510 PF00701 Dihydrodipicolinate synthetase family KS08_08515 PF17770 Ribonuclease J C-terminal domain KS08_08515 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain KS08_08515 PF00753 Metallo-beta-lactamase superfamily KS08_08520 PF00574 Clp protease KS08_08525 PF14035 YlzJ-like protein KS08_08530 PF17854 FtsK alpha domain KS08_08530 PF09397 Ftsk gamma domain KS08_08530 PF01580 FtsK/SpoIIIE family KS08_08535 PF00392 Bacterial regulatory proteins, gntR family KS08_08535 PF07702 UTRA domain KS08_08540 PF07690 Major Facilitator Superfamily KS08_08545 PF01047 MarR family KS08_08550 PF03176 MMPL family KS08_08555 PF05193 Peptidase M16 inactive domain KS08_08560 PF05193 Peptidase M16 inactive domain KS08_08560 PF00675 Insulinase (Peptidase family M16) KS08_08570 PF11588 Protein of unknown function (DUF3243) KS08_08575 PF11868 Protein of unknown function (DUF3388) KS08_08580 PF13464 Domain of unknown function (DUF4115) KS08_08585 PF01066 CDP-alcohol phosphatidyltransferase KS08_08590 PF18146 Damage-inducible protein CinA KH domain KS08_08590 PF02464 Competence-damaged protein KS08_08590 PF00994 Probable molybdopterin binding domain KS08_08595 PF00154 recA bacterial DNA recombination protein KS08_08600 PF00144 Beta-lactamase KS08_08605 PF01966 HD domain KS08_08605 PF00013 KH domain KS08_08605 PF12072 Domain of unknown function (DUF3552) KS08_08610 PF13277 YmdB-like protein KS08_08615 PF04232 Stage V sporulation protein S (SpoVS) KS08_08620 PF08240 Alcohol dehydrogenase GroES-like domain KS08_08620 PF00107 Zinc-binding dehydrogenase KS08_08625 PF00155 Aminotransferase class I and II KS08_08630 PF04055 Radical SAM superfamily KS08_08630 PF01938 TRAM domain KS08_08630 PF00919 Uncharacterized protein family UPF0004 KS08_08635 PF06133 Control of competence regulator ComK, YlbF/YmcA KS08_08640 PF10628 Outer spore coat protein E (CotE) KS08_08645 PF00488 MutS domain V KS08_08645 PF05190 MutS family domain IV KS08_08645 PF05192 MutS domain III KS08_08645 PF05188 MutS domain II KS08_08645 PF01624 MutS domain I KS08_08650 PF08676 MutL C terminal dimerisation domain KS08_08650 PF01119 DNA mismatch repair protein, C-terminal domain KS08_08655 PF00753 Metallo-beta-lactamase superfamily KS08_08660 PF00698 Acyl transferase domain KS08_08665 PF00698 Acyl transferase domain KS08_08670 PF00698 Acyl transferase domain KS08_08675 PF00550 Phosphopantetheine attachment site KS08_08680 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal KS08_08680 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal KS08_08685 PF00378 Enoyl-CoA hydratase/isomerase KS08_08690 PF00378 Enoyl-CoA hydratase/isomerase KS08_08695 PF00668 Condensation domain KS08_08695 PF16197 Ketoacyl-synthetase C-terminal extension KS08_08695 PF13193 AMP-binding enzyme C-terminal domain KS08_08695 PF14765 Polyketide synthase dehydratase KS08_08695 PF00501 AMP-binding enzyme KS08_08695 PF02801 Beta-ketoacyl synthase, C-terminal domain KS08_08695 PF00109 Beta-ketoacyl synthase, N-terminal domain KS08_08695 PF08659 KR domain KS08_08695 PF00550 Phosphopantetheine attachment site KS08_08700 PF16197 Ketoacyl-synthetase C-terminal extension KS08_08700 PF00109 Beta-ketoacyl synthase, N-terminal domain KS08_08700 PF02801 Beta-ketoacyl synthase, C-terminal domain KS08_08700 PF08659 KR domain KS08_08700 PF00550 Phosphopantetheine attachment site KS08_08700 PF14765 Polyketide synthase dehydratase KS08_08705 PF08659 KR domain KS08_08705 PF02801 Beta-ketoacyl synthase, C-terminal domain KS08_08705 PF00109 Beta-ketoacyl synthase, N-terminal domain KS08_08705 PF00109 Beta-ketoacyl synthase, N-terminal domain KS08_08705 PF02801 Beta-ketoacyl synthase, C-terminal domain KS08_08705 PF16197 Ketoacyl-synthetase C-terminal extension KS08_08705 PF08242 Methyltransferase domain KS08_08705 PF00550 Phosphopantetheine attachment site KS08_08705 PF14765 Polyketide synthase dehydratase KS08_08705 PF00550 Phosphopantetheine attachment site KS08_08705 PF16197 Ketoacyl-synthetase C-terminal extension KS08_08705 PF08659 KR domain KS08_08705 PF14765 Polyketide synthase dehydratase KS08_08705 PF08242 Methyltransferase domain KS08_08710 PF13193 AMP-binding enzyme C-terminal domain KS08_08710 PF00668 Condensation domain KS08_08710 PF14765 Polyketide synthase dehydratase KS08_08710 PF16197 Ketoacyl-synthetase C-terminal extension KS08_08710 PF02801 Beta-ketoacyl synthase, C-terminal domain KS08_08710 PF00109 Beta-ketoacyl synthase, N-terminal domain KS08_08710 PF00501 AMP-binding enzyme KS08_08710 PF08659 KR domain KS08_08710 PF00550 Phosphopantetheine attachment site KS08_08715 PF00550 Phosphopantetheine attachment site KS08_08715 PF00109 Beta-ketoacyl synthase, N-terminal domain KS08_08715 PF14765 Polyketide synthase dehydratase KS08_08715 PF00975 Thioesterase domain KS08_08715 PF08242 Methyltransferase domain KS08_08715 PF02801 Beta-ketoacyl synthase, C-terminal domain KS08_08715 PF16197 Ketoacyl-synthetase C-terminal extension KS08_08720 PF00067 Cytochrome P450 KS08_08725 PF14040 Deoxyribonuclease NucA/NucB KS08_08730 PF06912 Protein of unknown function (DUF1275) KS08_08740 PF00082 Subtilase family KS08_08750 PF05908 Poly-gamma-glutamate hydrolase KS08_08755 PF02566 OsmC-like protein KS08_08760 PF00893 Small Multidrug Resistance protein KS08_08765 PF00893 Small Multidrug Resistance protein KS08_08775 PF12788 YmaF family KS08_08785 PF17209 Hfq protein KS08_08790 PF14157 YmzC-like protein KS08_08800 PF07972 NrdI Flavodoxin like KS08_08805 PF02867 Ribonucleotide reductase, barrel domain KS08_08805 PF00317 Ribonucleotide reductase, all-alpha domain KS08_08805 PF08343 Ribonucleotide reductase N-terminal KS08_08810 PF00268 Ribonucleotide reductase, small chain KS08_08830 PF00004 ATPase family associated with various cellular activities (AAA) KS08_08830 PF17866 AAA lid domain KS08_08835 PF01926 50S ribosome-binding GTPase KS08_08835 PF16360 GTP-binding GTPase Middle Region KS08_08835 PF13167 GTP-binding GTPase N-terminal KS08_08840 PF06838 Methionine gamma-lyase KS08_08845 PF13411 MerR HTH family regulatory protein KS08_08850 PF03951 Glutamine synthetase, beta-Grasp domain KS08_08850 PF00120 Glutamine synthetase, catalytic domain KS08_08875 PF00457 Glycosyl hydrolases family 11 KS08_08880 PF00067 Cytochrome P450 KS08_08890 PF04616 Glycosyl hydrolases family 43 KS08_08890 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain KS08_08895 PF00480 ROK family KS08_08900 PF01261 Xylose isomerase-like TIM barrel KS08_08905 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KS08_08905 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KS08_08910 PF00457 Glycosyl hydrolases family 11 KS08_08915 PF00391 PEP-utilising enzyme, mobile domain KS08_08915 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain KS08_08925 PF08240 Alcohol dehydrogenase GroES-like domain KS08_08925 PF00107 Zinc-binding dehydrogenase KS08_08935 PF18801 response regulator aspartate phosphatase H, N terminal KS08_08950 PF05163 DinB family KS08_08955 PF00107 Zinc-binding dehydrogenase KS08_08955 PF08240 Alcohol dehydrogenase GroES-like domain KS08_08970 PF13217 Protein of unknown function (DUF4025) KS08_08975 PF17094 Uncharacterised protein family (UPF0715) KS08_08980 PF00583 Acetyltransferase (GNAT) family KS08_08980 PF14268 YoaP-like KS08_09000 PF16302 Domain of unknown function (DUF4944) KS08_09005 PF13021 Domain of unknown function (DUF3885) KS08_09015 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading KS08_09015 PF18416 N-acetylglucosamine binding protein domain 2 KS08_09020 PF09680 Family of unknown function KS08_09030 PF12708 Pectate lyase superfamily protein KS08_09030 PF11962 Peptidase_G2, IMC autoproteolytic cleavage domain KS08_09035 PF05154 TM2 domain KS08_09040 PF00692 dUTPase KS08_09045 PF13783 Domain of unknown function (DUF4177) KS08_09050 PF05908 Poly-gamma-glutamate hydrolase KS08_09060 PF10710 Protein of unknown function (DUF2512) KS08_09070 PF00717 Peptidase S24-like KS08_09070 PF01726 LexA DNA binding domain KS08_09075 PF01476 LysM domain KS08_09080 PF00239 Resolvase, N terminal domain KS08_09085 PF05979 Bacterial protein of unknown function (DUF896) KS08_09090 PF02780 Transketolase, C-terminal domain KS08_09090 PF00456 Transketolase, thiamine diphosphate binding domain KS08_09090 PF02779 Transketolase, pyrimidine binding domain KS08_09095 PF10747 Sporulation inhibitor of replication protein SirA KS08_09100 PF03672 Uncharacterised protein family (UPF0154) KS08_09105 PF09388 Spo0E like sporulation regulatory protein KS08_09110 PF02683 Cytochrome C biogenesis protein transmembrane region KS08_09115 PF00072 Response regulator receiver domain KS08_09120 PF07301 Protein of unknown function (DUF1453) KS08_09125 PF11084 Protein of unknown function (DUF2621) KS08_09135 PF08179 Small acid-soluble spore protein P family KS08_09145 PF00694 Aconitase C-terminal domain KS08_09145 PF00330 Aconitase family (aconitate hydratase) KS08_09150 PF00578 AhpC/TSA family KS08_09155 PF13040 Fur-regulated basic protein B KS08_09160 PF08177 Small acid-soluble spore protein N family KS08_09170 PF03061 Thioesterase superfamily KS08_09180 PF01521 Iron-sulphur cluster biosynthesis KS08_09185 PF02660 Glycerol-3-phosphate acyltransferase KS08_09190 PF13380 CoA binding domain KS08_09195 PF00204 DNA gyrase B KS08_09195 PF00986 DNA gyrase B subunit, carboxyl terminus KS08_09195 PF01751 Toprim domain KS08_09195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS08_09200 PF00521 DNA gyrase/topoisomerase IV, subunit A KS08_09200 PF03989 DNA gyrase C-terminal domain, beta-propeller KS08_09215 PF01235 Sodium:alanine symporter family KS08_09225 PF13761 Domain of unknown function (DUF4166) KS08_09230 PF14158 YndJ-like protein KS08_09245 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS08_09245 PF00512 His Kinase A (phospho-acceptor) domain KS08_09250 PF00072 Response regulator receiver domain KS08_09250 PF00486 Transcriptional regulatory protein, C terminal KS08_09255 PF02055 Glycosyl hydrolase family 30 TIM-barrel domain KS08_09255 PF17189 Glycosyl hydrolase family 30 beta sandwich domain KS08_09260 PF04616 Glycosyl hydrolases family 43 KS08_09260 PF03422 Carbohydrate binding module (family 6) KS08_09265 PF00501 AMP-binding enzyme KS08_09265 PF00975 Thioesterase domain KS08_09265 PF00668 Condensation domain KS08_09265 PF00550 Phosphopantetheine attachment site KS08_09265 PF13193 AMP-binding enzyme C-terminal domain KS08_09270 PF13193 AMP-binding enzyme C-terminal domain KS08_09270 PF00550 Phosphopantetheine attachment site KS08_09270 PF00668 Condensation domain KS08_09270 PF00501 AMP-binding enzyme KS08_09275 PF00109 Beta-ketoacyl synthase, N-terminal domain KS08_09275 PF00550 Phosphopantetheine attachment site KS08_09275 PF00202 Aminotransferase class-III KS08_09275 PF16197 Ketoacyl-synthetase C-terminal extension KS08_09275 PF00501 AMP-binding enzyme KS08_09275 PF00668 Condensation domain KS08_09275 PF13193 AMP-binding enzyme C-terminal domain KS08_09275 PF02801 Beta-ketoacyl synthase, C-terminal domain KS08_09280 PF00698 Acyl transferase domain KS08_09290 PF01144 Coenzyme A transferase KS08_09295 PF01144 Coenzyme A transferase KS08_09300 PF00067 Cytochrome P450 KS08_09305 PF04055 Radical SAM superfamily KS08_09305 PF06968 Biotin and Thiamin Synthesis associated domain KS08_09315 PF00155 Aminotransferase class I and II KS08_09320 PF00202 Aminotransferase class-III KS08_09325 PF03744 6-carboxyhexanoate--CoA ligase KS08_09330 PF04138 GtrA-like protein KS08_09335 PF00483 Nucleotidyl transferase KS08_09340 PF09335 SNARE associated Golgi protein KS08_09345 PF01039 Carboxyl transferase domain KS08_09350 PF00378 Enoyl-CoA hydratase/isomerase KS08_09355 PF00682 HMGL-like KS08_09360 PF00364 Biotin-requiring enzyme KS08_09365 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KS08_09365 PF02785 Biotin carboxylase C-terminal domain KS08_09365 PF00289 Biotin carboxylase, N-terminal domain KS08_09370 PF00501 AMP-binding enzyme KS08_09370 PF13193 AMP-binding enzyme C-terminal domain KS08_09375 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KS08_09375 PF02770 Acyl-CoA dehydrogenase, middle domain KS08_09375 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KS08_09380 PF02638 Glycosyl hydrolase-like 10 KS08_09385 PF07098 Protein of unknown function (DUF1360) KS08_09390 PF00501 AMP-binding enzyme KS08_09390 PF13193 AMP-binding enzyme C-terminal domain KS08_09390 PF00668 Condensation domain KS08_09390 PF00550 Phosphopantetheine attachment site KS08_09390 PF00975 Thioesterase domain KS08_09395 PF00501 AMP-binding enzyme KS08_09395 PF00550 Phosphopantetheine attachment site KS08_09395 PF13193 AMP-binding enzyme C-terminal domain KS08_09395 PF00668 Condensation domain KS08_09400 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family KS08_09405 PF01263 Aldose 1-epimerase KS08_09410 PF01554 MatE KS08_09415 PF16800 IseA DL-endopeptidase inhibitor KS08_09425 PF00589 Phage integrase family KS08_09430 PF12728 Helix-turn-helix domain KS08_09440 PF07690 Major Facilitator Superfamily KS08_09450 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KS08_09450 PF03129 Anticodon binding domain KS08_09450 PF02824 TGS domain KS08_09450 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KS08_09455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KS08_09455 PF03466 LysR substrate binding domain KS08_09460 PF00107 Zinc-binding dehydrogenase KS08_09460 PF08240 Alcohol dehydrogenase GroES-like domain KS08_09470 PF07992 Pyridine nucleotide-disulphide oxidoreductase KS08_09470 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster KS08_09475 PF04898 Glutamate synthase central domain KS08_09475 PF00310 Glutamine amidotransferases class-II KS08_09475 PF01645 Conserved region in glutamate synthase KS08_09475 PF01493 GXGXG motif KS08_09480 PF03466 LysR substrate binding domain KS08_09480 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KS08_09485 PF01472 PUA domain KS08_09485 PF00696 Amino acid kinase family KS08_09490 PF14748 Pyrroline-5-carboxylate reductase dimerisation KS08_09490 PF03807 NADP oxidoreductase coenzyme F420-dependent KS08_09495 PF02334 Replication terminator protein KS08_09500 PF00106 short chain dehydrogenase KS08_09505 PF06103 Bacterial protein of unknown function (DUF948) KS08_09515 PF07690 Major Facilitator Superfamily KS08_09520 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KS08_09520 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KS08_09525 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KS08_09525 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KS08_09530 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KS08_09530 PF00384 Molybdopterin oxidoreductase KS08_09530 PF01568 Molydopterin dinucleotide binding domain KS08_09560 PF01588 Putative tRNA binding domain KS08_09565 PF12833 Helix-turn-helix domain KS08_09565 PF07883 Cupin domain KS08_09570 PF00440 Bacterial regulatory proteins, tetR family KS08_09570 PF13305 Tetracyclin repressor-like, C-terminal domain KS08_09575 PF00753 Metallo-beta-lactamase superfamily KS08_09585 PF01022 Bacterial regulatory protein, arsR family KS08_09595 PF04238 Protein of unknown function (DUF420) KS08_09600 PF18846 Bacterial archaeo-eukaryotic release factor family 5 KS08_09610 PF02016 LD-carboxypeptidase N-terminal domain KS08_09610 PF17676 LD-carboxypeptidase C-terminal domain KS08_09620 PF06725 3D domain KS08_09620 PF01476 LysM domain KS08_09625 PF00270 DEAD/DEAH box helicase KS08_09625 PF00570 HRDC domain KS08_09625 PF16124 RecQ zinc-binding KS08_09625 PF09382 RQC domain KS08_09625 PF00271 Helicase conserved C-terminal domain KS08_09635 PF02525 Flavodoxin-like fold KS08_09640 PF01258 Prokaryotic dksA/traR C4-type zinc finger KS08_09655 PF00011 Hsp20/alpha crystallin family KS08_09670 PF08000 Bacterial PH domain KS08_09685 PF00171 Aldehyde dehydrogenase family KS08_09690 PF13249 Squalene-hopene cyclase N-terminal domain KS08_09690 PF13243 Squalene-hopene cyclase C-terminal domain KS08_09695 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KS08_09695 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KS08_09700 PF00209 Sodium:neurotransmitter symporter family KS08_09705 PF01758 Sodium Bile acid symporter family KS08_09710 PF00753 Metallo-beta-lactamase superfamily KS08_09715 PF02817 e3 binding domain KS08_09715 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KS08_09715 PF00364 Biotin-requiring enzyme KS08_09720 PF00676 Dehydrogenase E1 component KS08_09720 PF02779 Transketolase, pyrimidine binding domain KS08_09720 PF16870 2-oxoglutarate dehydrogenase C-terminal KS08_09725 PF00092 von Willebrand factor type A domain KS08_09730 PF07728 AAA domain (dynein-related subfamily) KS08_09735 PF13627 Prokaryotic lipoprotein-attachment site KS08_09735 PF00080 Copper/zinc superoxide dismutase (SODC) KS08_09740 PF01476 LysM domain KS08_09740 PF00877 NlpC/P60 family KS08_09745 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase KS08_09750 PF10372 Bacterial membrane-spanning protein N-terminus KS08_09750 PF02457 DisA bacterial checkpoint controller nucleotide-binding KS08_09755 PF01554 MatE KS08_09760 PF01740 STAS domain KS08_09765 PF02585 GlcNAc-PI de-N-acetylase KS08_09770 PF08830 Protein of unknown function (DUF1806) KS08_09780 PF00892 EamA-like transporter family KS08_09795 PF14552 Tautomerase enzyme KS08_09805 PF01638 HxlR-like helix-turn-helix KS08_09810 PF00881 Nitroreductase family KS08_09815 PF01738 Dienelactone hydrolase family KS08_09820 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KS08_09825 PF11755 Protein of unknown function (DUF3311) KS08_09830 PF00474 Sodium:solute symporter family KS08_09840 PF00232 Glycosyl hydrolase family 1 KS08_09845 PF07702 UTRA domain KS08_09845 PF00392 Bacterial regulatory proteins, gntR family KS08_09850 PF17820 PDZ domain KS08_09850 PF03572 Peptidase family S41 KS08_09850 PF01471 Putative peptidoglycan binding domain KS08_09855 PF08241 Methyltransferase domain KS08_09865 PF02557 D-alanyl-D-alanine carboxypeptidase KS08_09870 PF01048 Phosphorylase superfamily KS08_09880 PF14191 YodL-like KS08_09885 PF01569 PAP2 superfamily KS08_09890 PF14162 YozD-like protein KS08_09905 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KS08_09910 PF06855 YozE SAM-like fold KS08_09915 PF14122 YokU-like protein, putative antitoxin KS08_09920 PF12544 Lysine-2,3-aminomutase KS08_09925 PF00583 Acetyltransferase (GNAT) family KS08_09930 PF07687 Peptidase dimerisation domain KS08_09930 PF01546 Peptidase family M20/M25/M40 KS08_09935 PF01144 Coenzyme A transferase KS08_09940 PF01144 Coenzyme A transferase KS08_09945 PF00202 Aminotransferase class-III KS08_09955 PF06445 GyrI-like small molecule binding domain KS08_09965 PF00583 Acetyltransferase (GNAT) family KS08_09970 PF00535 Glycosyl transferase family 2 KS08_09985 PF12996 DUF based on E. rectale Gene description (DUF3880) KS08_09990 PF02333 Phytase KS08_10010 PF01070 FMN-dependent dehydrogenase KS08_10025 PF00239 Resolvase, N terminal domain KS08_10025 PF07508 Recombinase KS08_10030 PF02719 Polysaccharide biosynthesis protein KS08_10035 PF01641 SelR domain KS08_10040 PF01625 Peptide methionine sulfoxide reductase KS08_10045 PF01047 MarR family KS08_10050 PF09911 Uncharacterized protein conserved in bacteria (DUF2140) KS08_10055 PF13472 GDSL-like Lipase/Acylhydrolase family KS08_10060 PF02630 SCO1/SenC KS08_10065 PF10751 Protein of unknown function (DUF2535) KS08_10070 PF00291 Pyridoxal-phosphate dependent enzyme KS08_10070 PF00585 C-terminal regulatory domain of Threonine dehydratase KS08_10075 PF08461 Ribonuclease R winged-helix domain KS08_10075 PF00158 Sigma-54 interaction domain KS08_10080 PF03006 Haemolysin-III related KS08_10090 PF00186 Dihydrofolate reductase KS08_10095 PF00303 Thymidylate synthase KS08_10100 PF14005 YpjP-like protein KS08_10105 PF04445 Putative SAM-dependent methyltransferase KS08_10110 PF06491 Disulphide isomerase KS08_10115 PF00920 Dehydratase family KS08_10120 PF08712 Scaffold protein Nfu/NifU N terminal KS08_10120 PF13769 Virulence factor KS08_10125 PF01966 HD domain KS08_10130 PF00255 Glutathione peroxidase KS08_10135 PF04204 Homoserine O-succinyltransferase KS08_10140 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase KS08_10140 PF00534 Glycosyl transferases group 1 KS08_10145 PF00313 'Cold-shock' DNA-binding domain KS08_10155 PF10819 Protein of unknown function (DUF2564) KS08_10160 PF10782 Zinc-finger KS08_10165 PF13456 Reverse transcriptase-like KS08_10170 PF02592 Putative vitamin uptake transporter KS08_10175 PF13456 Reverse transcriptase-like KS08_10185 PF01367 5'-3' exonuclease, C-terminal SAM fold KS08_10185 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KS08_10195 PF10752 Protein of unknown function (DUF2533) KS08_10200 PF00350 Dynamin family KS08_10205 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family KS08_10210 PF00195 Chalcone and stilbene synthases, N-terminal domain KS08_10210 PF02797 Chalcone and stilbene synthases, C-terminal domain KS08_10240 PF13443 Cro/C1-type HTH DNA-binding domain KS08_10270 PF00186 Dihydrofolate reductase KS08_10275 PF00303 Thymidylate synthase KS08_10300 PF00692 dUTPase KS08_10330 PF13392 HNH endonuclease KS08_10350 PF14528 LAGLIDADG-like domain KS08_10350 PF02867 Ribonucleotide reductase, barrel domain KS08_10350 PF00317 Ribonucleotide reductase, all-alpha domain KS08_10350 PF08343 Ribonucleotide reductase N-terminal KS08_10360 PF07972 NrdI Flavodoxin like KS08_10440 PF00145 C-5 cytosine-specific DNA methylase KS08_10450 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) KS08_10455 PF02223 Thymidylate kinase KS08_10465 PF09629 YorP protein KS08_10475 PF06725 3D domain KS08_10485 PF01368 DHH family KS08_10485 PF17768 RecJ OB domain KS08_10525 PF00149 Calcineurin-like phosphoesterase KS08_10530 PF13229 Right handed beta helix region KS08_10535 PF05908 Poly-gamma-glutamate hydrolase KS08_10570 PF02586 SOS response associated peptidase (SRAP) KS08_10575 PF01068 ATP dependent DNA ligase domain KS08_10605 PF14037 YoqO-like protein KS08_10615 PF01555 DNA methylase KS08_10655 PF09643 YopX protein KS08_10680 PF09467 Hypothetical protein Yopt KS08_10695 PF14072 DNA-sulfur modification-associated KS08_10700 PF02899 Phage integrase, N-terminal SAM-like domain KS08_10700 PF00589 Phage integrase family KS08_10705 PF01381 Helix-turn-helix KS08_10800 PF13443 Cro/C1-type HTH DNA-binding domain KS08_10810 PF01757 Acyltransferase family KS08_10815 PF17094 Uncharacterised protein family (UPF0715) KS08_10830 PF09669 Phage regulatory protein Rha (Phage_pRha) KS08_10830 PF03374 Phage antirepressor protein KilAC domain KS08_10835 PF00580 UvrD/REP helicase N-terminal domain KS08_10835 PF13361 UvrD-like helicase C-terminal domain KS08_10895 PF00216 Bacterial DNA-binding protein KS08_10925 PF00521 DNA gyrase/topoisomerase IV, subunit A KS08_10925 PF14528 LAGLIDADG-like domain KS08_11015 PF00589 Phage integrase family KS08_11015 PF13495 Phage integrase, N-terminal SAM-like domain KS08_11030 PF03793 PASTA domain KS08_11030 PF00069 Protein kinase domain KS08_11055 PF05709 Phage tail protein KS08_11060 PF06605 Prophage endopeptidase tail KS08_11075 PF11962 Peptidase_G2, IMC autoproteolytic cleavage domain KS08_11075 PF12708 Pectate lyase superfamily protein KS08_11080 PF01471 Putative peptidoglycan binding domain KS08_11080 PF01510 N-acetylmuramoyl-L-alanine amidase KS08_11110 PF11799 impB/mucB/samB family C-terminal domain KS08_11110 PF00817 impB/mucB/samB family KS08_11110 PF11798 IMS family HHH motif KS08_11115 PF08863 YolD-like protein KS08_11140 PF04740 LXG domain of WXG superfamily KS08_11140 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH KS08_11155 PF05901 Excalibur calcium-binding domain KS08_11155 PF00565 Staphylococcal nuclease homologue KS08_11165 PF00860 Permease family KS08_11170 PF00156 Phosphoribosyl transferase domain KS08_11175 PF02074 Carboxypeptidase Taq (M32) metallopeptidase KS08_11180 PF13307 Helicase C-terminal domain KS08_11195 PF02926 THUMP domain KS08_11195 PF01170 Putative RNA methylase family UPF0020 KS08_11200 PF05103 DivIVA protein KS08_11205 PF06908 YspA SLOG family KS08_11215 PF13482 RNase_H superfamily KS08_11220 PF09369 Domain of unknown function (DUF1998) KS08_11220 PF00270 DEAD/DEAH box helicase KS08_11220 PF00271 Helicase conserved C-terminal domain KS08_11225 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 KS08_11235 PF14179 YppG-like protein KS08_11240 PF14178 YppF-like protein KS08_11245 PF08807 Bacterial domain of unknown function (DUF1798) KS08_11260 PF10720 Protein of unknown function (DUF2515) KS08_11265 PF03838 Recombination protein U KS08_11270 PF00905 Penicillin binding protein transpeptidase domain KS08_11270 PF00912 Transglycosylase KS08_11280 PF00730 HhH-GPD superfamily base excision DNA repair protein KS08_11280 PF00633 Helix-hairpin-helix motif KS08_11280 PF10576 Iron-sulfur binding domain of endonuclease III KS08_11285 PF07261 Replication initiation and membrane attachment KS08_11290 PF01336 OB-fold nucleic acid binding domain KS08_11290 PF00152 tRNA synthetases class II (D, K and N) KS08_11295 PF00155 Aminotransferase class I and II KS08_11300 PF17881 Domain of unknown function (DUF5590) KS08_11300 PF03413 Peptidase propeptide and YPEB domain KS08_11305 PF14084 Protein of unknown function (DUF4264) KS08_11310 PF00929 Exonuclease KS08_11310 PF13307 Helicase C-terminal domain KS08_11310 PF04851 Type III restriction enzyme, res subunit KS08_11315 PF02261 Aspartate decarboxylase KS08_11320 PF02569 Pantoate-beta-alanine ligase KS08_11325 PF02548 Ketopantoate hydroxymethyltransferase KS08_11330 PF02237 Biotin protein ligase C terminal domain KS08_11330 PF03099 Biotin/lipoate A/B protein ligase family KS08_11330 PF08279 HTH domain KS08_11335 PF01743 Poly A polymerase head domain KS08_11335 PF12627 Probable RNA and SrmB- binding site of polymerase A KS08_11335 PF13735 tRNA nucleotidyltransferase domain 2 putative KS08_11340 PF13439 Glycosyltransferase Family 4 KS08_11340 PF00534 Glycosyl transferases group 1 KS08_11345 PF02585 GlcNAc-PI de-N-acetylase KS08_11350 PF02142 MGS-like domain KS08_11355 PF01113 Dihydrodipicolinate reductase, N-terminus KS08_11355 PF05173 Dihydrodipicolinate reductase, C-terminus KS08_11360 PF03819 MazG nucleotide pyrophosphohydrolase domain KS08_11365 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KS08_11365 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KS08_11370 PF00190 Cupin KS08_11375 PF09577 Sporulation protein YpjB (SpoYpjB) KS08_11380 PF07187 Protein of unknown function (DUF1405) KS08_11385 PF00032 Cytochrome b(C-terminal)/b6/petD KS08_11385 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KS08_11390 PF00033 Cytochrome b/b6/petB KS08_11395 PF00355 Rieske [2Fe-2S] domain KS08_11400 PF10673 Protein of unknown function (DUF2487) KS08_11405 PF08858 IDEAL domain KS08_11405 PF08864 UPF0302 domain KS08_11415 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KS08_11420 PF01842 ACT domain KS08_11420 PF02153 Prephenate dehydrogenase KS08_11425 PF00155 Aminotransferase class I and II KS08_11430 PF00290 Tryptophan synthase alpha chain KS08_11435 PF00291 Pyridoxal-phosphate dependent enzyme KS08_11440 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase KS08_11445 PF00218 Indole-3-glycerol phosphate synthase KS08_11450 PF02885 Glycosyl transferase family, helical bundle domain KS08_11450 PF00591 Glycosyl transferase family, a/b domain KS08_11455 PF00425 chorismate binding enzyme KS08_11455 PF04715 Anthranilate synthase component I, N terminal region KS08_11460 PF07736 Chorismate mutase type I KS08_11465 PF01761 3-dehydroquinate synthase KS08_11470 PF01264 Chorismate synthase KS08_11475 PF01739 CheR methyltransferase, SAM binding domain KS08_11475 PF03705 CheR methyltransferase, all-alpha domain KS08_11480 PF00334 Nucleoside diphosphate kinase KS08_11485 PF00348 Polyprenyl synthetase KS08_11490 PF01209 ubiE/COQ5 methyltransferase family KS08_11495 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 KS08_11500 PF02081 Tryptophan RNA-binding attenuator protein KS08_11505 PF01227 GTP cyclohydrolase I KS08_11510 PF00216 Bacterial DNA-binding protein KS08_11515 PF09547 Stage IV sporulation protein A (spore_IV_A) KS08_11525 PF10966 Protein of unknown function (DUF2768) KS08_11530 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus KS08_11530 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus KS08_11535 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal KS08_11535 PF01926 50S ribosome-binding GTPase KS08_11545 PF14140 YpzI-like protein KS08_11550 PF01070 FMN-dependent dehydrogenase KS08_11555 PF00575 S1 RNA binding domain KS08_11560 PF02224 Cytidylate kinase KS08_11565 PF17313 Family of unknown function (DUF5359) KS08_11570 PF07238 PilZ domain KS08_11570 PF12945 Flagellar protein YcgR KS08_11575 PF14620 YpeB sporulation KS08_11575 PF03413 Peptidase propeptide and YPEB domain KS08_11580 PF01471 Putative peptidoglycan binding domain KS08_11580 PF07486 Cell Wall Hydrolase KS08_11585 PF13367 PrsW family intramembrane metalloprotease KS08_11595 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KS08_11595 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KS08_11600 PF05389 Negative regulator of genetic competence (MecA) KS08_11605 PF00149 Calcineurin-like phosphoesterase KS08_11610 PF10864 Protein of unknown function (DUF2663) KS08_11615 PF01476 LysM domain KS08_11620 PF02517 CPBP intramembrane metalloprotease KS08_11625 PF00271 Helicase conserved C-terminal domain KS08_11625 PF00270 DEAD/DEAH box helicase KS08_11630 PF14493 Helix-turn-helix domain KS08_11640 PF12822 ECF transporter, substrate-specific component KS08_11645 PF01842 ACT domain KS08_11645 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KS08_11645 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KS08_11655 PF04542 Sigma-70 region 2 KS08_11655 PF08281 Sigma-70, region 4 KS08_11660 PF00989 PAS fold KS08_11660 PF00672 HAMP domain KS08_11660 PF00512 His Kinase A (phospho-acceptor) domain KS08_11660 PF18698 Histidine kinase sensor domain KS08_11660 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS08_11665 PF00486 Transcriptional regulatory protein, C terminal KS08_11665 PF00072 Response regulator receiver domain KS08_11670 PF01578 Cytochrome C assembly protein KS08_11675 PF05140 ResB-like family KS08_11680 PF00578 AhpC/TSA family KS08_11685 PF01479 S4 domain KS08_11685 PF00849 RNA pseudouridylate synthase KS08_11690 PF07670 Nucleoside recognition KS08_11695 PF07670 Nucleoside recognition KS08_11700 PF07943 Penicillin-binding protein 5, C-terminal domain KS08_11700 PF00768 D-alanyl-D-alanine carboxypeptidase KS08_11705 PF13047 Protein of unknown function (DUF3907) KS08_11710 PF04079 Segregation and condensation complex subunit ScpB KS08_11715 PF02616 Segregation and condensation protein ScpA KS08_11720 PF03745 Domain of unknown function (DUF309) KS08_11725 PF00583 Acetyltransferase (GNAT) family KS08_11730 PF00885 6,7-dimethyl-8-ribityllumazine synthase KS08_11735 PF00925 GTP cyclohydrolase II KS08_11735 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase KS08_11740 PF00677 Lumazine binding domain KS08_11745 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KS08_11745 PF01872 RibD C-terminal domain KS08_11755 PF10502 Signal peptidase, peptidase S26 KS08_11765 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD KS08_11770 PF06207 Protein of unknown function (DUF1002) KS08_11775 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain KS08_11775 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain KS08_11780 PF03323 Bacillus/Clostridium GerA spore germination protein KS08_11785 PF14097 Stage V sporulation protein AE1 KS08_11790 PF03862 SpoVAC/SpoVAEB sporulation membrane protein KS08_11795 PF07451 Stage V sporulation protein AD (SpoVAD) KS08_11800 PF03862 SpoVAC/SpoVAEB sporulation membrane protein KS08_11805 PF13782 Stage V sporulation protein AB KS08_11810 PF12164 Stage V sporulation protein AA KS08_11815 PF04542 Sigma-70 region 2 KS08_11815 PF04545 Sigma-70, region 4 KS08_11815 PF04539 Sigma-70 region 3 KS08_11820 PF13581 Histidine kinase-like ATPase domain KS08_11825 PF01740 STAS domain KS08_11830 PF00768 D-alanyl-D-alanine carboxypeptidase KS08_11830 PF07943 Penicillin-binding protein 5, C-terminal domain KS08_11835 PF01048 Phosphorylase superfamily KS08_11845 PF00589 Phage integrase family KS08_11845 PF02899 Phage integrase, N-terminal SAM-like domain KS08_11850 PF14004 Protein of unknown function (DUF4227) KS08_11855 PF01475 Ferric uptake regulator family KS08_11860 PF01944 Stage II sporulation protein M KS08_11875 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KS08_11875 PF03949 Malic enzyme, NAD binding domain KS08_11875 PF00390 Malic enzyme, N-terminal domain KS08_11880 PF03553 Na+/H+ antiporter family KS08_11885 PF00206 Lyase KS08_11885 PF10415 Fumarase C C-terminus KS08_11890 PF17763 Glutaminase/Asparaginase C-terminal domain KS08_11890 PF00710 Asparaginase, N-terminal KS08_11895 PF01381 Helix-turn-helix KS08_11905 PF00293 NUDIX domain KS08_11910 PF13072 Mother cell inhibitor of FtsZ KS08_11915 PF00248 Aldo/keto reductase family KS08_11920 PF13025 Protein of unknown function (DUF3886) KS08_11925 PF12146 Serine aminopeptidase, S33 KS08_11930 PF10827 Protein of unknown function (DUF2552) KS08_11935 PF01521 Iron-sulphur cluster biosynthesis KS08_11940 PF13673 Acetyltransferase (GNAT) domain KS08_11940 PF04229 GrpB protein KS08_11945 PF00583 Acetyltransferase (GNAT) family KS08_11950 PF00817 impB/mucB/samB family KS08_11950 PF11799 impB/mucB/samB family C-terminal domain KS08_11955 PF08863 YolD-like protein KS08_11960 PF14164 YqzH-like protein KS08_11965 PF01594 AI-2E family transporter KS08_11970 PF00485 Phosphoribulokinase / Uridine kinase family KS08_11975 PF00291 Pyridoxal-phosphate dependent enzyme KS08_11980 PF00106 short chain dehydrogenase KS08_11985 PF00753 Metallo-beta-lactamase superfamily KS08_11990 PF14748 Pyrroline-5-carboxylate reductase dimerisation KS08_11990 PF03807 NADP oxidoreductase coenzyme F420-dependent KS08_12000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KS08_12000 PF03466 LysR substrate binding domain KS08_12010 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KS08_12015 PF12146 Serine aminopeptidase, S33 KS08_12020 PF00471 Ribosomal protein L33 KS08_12025 PF12706 Beta-lactamase superfamily domain KS08_12030 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain KS08_12030 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain KS08_12035 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase KS08_12035 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain KS08_12040 PF00817 impB/mucB/samB family KS08_12040 PF11798 IMS family HHH motif KS08_12040 PF11799 impB/mucB/samB family C-terminal domain KS08_12050 PF02096 60Kd inner membrane protein KS08_12055 PF01546 Peptidase family M20/M25/M40 KS08_12055 PF07687 Peptidase dimerisation domain KS08_12060 PF01039 Carboxyl transferase domain KS08_12075 PF03734 L,D-transpeptidase catalytic domain KS08_12080 PF11728 Putative aromatic acid exporter C-terminal domain KS08_12080 PF06081 Aromatic acid exporter family member 1 KS08_12085 PF00005 ABC transporter KS08_12090 PF00528 Binding-protein-dependent transport system inner membrane component KS08_12095 PF00497 Bacterial extracellular solute-binding proteins, family 3 KS08_12100 PF06491 Disulphide isomerase KS08_12105 PF00781 Diacylglycerol kinase catalytic domain KS08_12110 PF00364 Biotin-requiring enzyme KS08_12110 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) KS08_12110 PF02817 e3 binding domain KS08_12115 PF02780 Transketolase, C-terminal domain KS08_12115 PF02779 Transketolase, pyrimidine binding domain KS08_12120 PF00676 Dehydrogenase E1 component KS08_12125 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain KS08_12125 PF07992 Pyridine nucleotide-disulphide oxidoreductase KS08_12130 PF00871 Acetokinase family KS08_12135 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KS08_12135 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KS08_12140 PF01515 Phosphate acetyl/butaryl transferase KS08_12145 PF00989 PAS fold KS08_12145 PF00158 Sigma-54 interaction domain KS08_12145 PF02954 Bacterial regulatory protein, Fis family KS08_12150 PF11118 Protein of unknown function (DUF2627) KS08_12160 PF03972 MmgE/PrpD family KS08_12165 PF00285 Citrate synthase, C-terminal domain KS08_12170 PF02770 Acyl-CoA dehydrogenase, middle domain KS08_12170 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KS08_12170 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KS08_12175 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KS08_12175 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KS08_12180 PF00108 Thiolase, N-terminal domain KS08_12180 PF02803 Thiolase, C-terminal domain KS08_12185 PF03009 Glycerophosphoryl diester phosphodiesterase family KS08_12190 PF01520 N-acetylmuramoyl-L-alanine amidase KS08_12215 PF00724 NADH:flavin oxidoreductase / NADH oxidase family KS08_12220 PF10676 Spore germination protein gerPA/gerPF KS08_12225 PF10676 Spore germination protein gerPA/gerPF KS08_12230 PF01168 Alanine racemase, N-terminal domain KS08_12230 PF00842 Alanine racemase, C-terminal domain KS08_12235 PF08769 Sporulation initiation factor Spo0A C terminal KS08_12235 PF00072 Response regulator receiver domain KS08_12245 PF17820 PDZ domain KS08_12245 PF05580 SpoIVB peptidase S55 KS08_12250 PF13476 AAA domain KS08_12255 PF01316 Arginine repressor, DNA binding domain KS08_12255 PF02863 Arginine repressor, C-terminal domain KS08_12260 PF01479 S4 domain KS08_12260 PF01728 FtsJ-like methyltransferase KS08_12265 PF02780 Transketolase, C-terminal domain KS08_12265 PF02779 Transketolase, pyrimidine binding domain KS08_12265 PF13292 1-deoxy-D-xylulose-5-phosphate synthase KS08_12270 PF00348 Polyprenyl synthetase KS08_12275 PF02609 Exonuclease VII small subunit KS08_12280 PF13742 OB-fold nucleic acid binding domain KS08_12280 PF02601 Exonuclease VII, large subunit KS08_12285 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain KS08_12285 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain KS08_12290 PF01029 NusB family KS08_12295 PF03780 Asp23 family, cell envelope-related function KS08_12300 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain KS08_12300 PF02785 Biotin carboxylase C-terminal domain KS08_12300 PF00289 Biotin carboxylase, N-terminal domain KS08_12305 PF00364 Biotin-requiring enzyme KS08_12310 PF12685 SpoIIIAH-like protein KS08_12320 PF09581 Stage III sporulation protein AF (Spore_III_AF) KS08_12325 PF09546 Stage III sporulation protein AE (spore_III_AE) KS08_12330 PF06686 Stage III sporulation protein AC/AD protein family KS08_12335 PF06686 Stage III sporulation protein AC/AD protein family KS08_12340 PF09548 Stage III sporulation protein AB (spore_III_AB) KS08_12350 PF10942 Protein of unknown function (DUF2619) KS08_12355 PF01132 Elongation factor P (EF-P) OB domain KS08_12355 PF08207 Elongation factor P (EF-P) KOW-like domain KS08_12355 PF09285 Elongation factor P, C-terminal KS08_12360 PF00557 Metallopeptidase family M24 KS08_12360 PF01321 Creatinase/Prolidase N-terminal domain KS08_12365 PF11085 Conserved membrane protein YqhR KS08_12370 PF07136 Protein of unknown function (DUF1385) KS08_12380 PF01734 Patatin-like phospholipase KS08_12385 PF02742 Iron dependent repressor, metal binding and dimerisation domain KS08_12385 PF01325 Iron dependent repressor, N-terminal DNA binding domain KS08_12390 PF03099 Biotin/lipoate A/B protein ligase family KS08_12395 PF00581 Rhodanese-like domain KS08_12400 PF02347 Glycine cleavage system P-protein KS08_12405 PF02347 Glycine cleavage system P-protein KS08_12410 PF08669 Glycine cleavage T-protein C-terminal barrel domain KS08_12410 PF01571 Aminomethyltransferase folate-binding domain KS08_12415 PF00176 SNF2 family N-terminal domain KS08_12415 PF00271 Helicase conserved C-terminal domain KS08_12420 PF11079 Bacterial protein YqhG of unknown function KS08_12425 PF08671 Anti-repressor SinI KS08_12430 PF01381 Helix-turn-helix KS08_12430 PF08671 Anti-repressor SinI KS08_12435 PF12389 Camelysin metallo-endopeptidase KS08_12450 PF13028 Protein of unknown function (DUF3889) KS08_12455 PF14038 YqzE-like protein KS08_12460 PF14173 ComG operon protein 7 KS08_12465 PF15980 Putative Competence protein ComGF KS08_12475 PF07963 Prokaryotic N-terminal methylation motif KS08_12480 PF07963 Prokaryotic N-terminal methylation motif KS08_12485 PF00482 Type II secretion system (T2SS), protein F KS08_12490 PF00437 Type II/IV secretion system protein KS08_12495 PF01544 CorA-like Mg2+ transporter protein KS08_12500 PF00571 CBS domain KS08_12500 PF03471 Transporter associated domain KS08_12500 PF01595 Cyclin M transmembrane N-terminal domain KS08_12505 PF01740 STAS domain KS08_12505 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain KS08_12515 PF03960 ArsC family KS08_12520 PF11117 Protein of unknown function (DUF2626) KS08_12525 PF00753 Metallo-beta-lactamase superfamily KS08_12530 PF10958 Protein of unknown function (DUF2759) KS08_12535 PF01910 Thiamine-binding protein KS08_12545 PF00246 Zinc carboxypeptidase KS08_12550 PF00480 ROK family KS08_12555 PF06014 Bacterial protein of unknown function (DUF910) KS08_12560 PF03553 Na+/H+ antiporter family KS08_12570 PF01812 5-formyltetrahydrofolate cyclo-ligase family KS08_12575 PF00471 Ribosomal protein L33 KS08_12590 PF00005 ABC transporter KS08_12595 PF00005 ABC transporter KS08_12600 PF00528 Binding-protein-dependent transport system inner membrane component KS08_12605 PF00528 Binding-protein-dependent transport system inner membrane component KS08_12610 PF12849 PBP superfamily domain KS08_12620 PF07690 Major Facilitator Superfamily KS08_12625 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain KS08_12625 PF02777 Iron/manganese superoxide dismutases, C-terminal domain KS08_12630 PF04306 Protein of unknown function (DUF456) KS08_12635 PF06691 Protein of unknown function (DUF1189) KS08_12645 PF04551 GcpE protein KS08_12660 PF01475 Ferric uptake regulator family KS08_12665 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KS08_12665 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KS08_12670 PF11116 Protein of unknown function (DUF2624) KS08_12675 PF01261 Xylose isomerase-like TIM barrel KS08_12680 PF00271 Helicase conserved C-terminal domain KS08_12680 PF00270 DEAD/DEAH box helicase KS08_12685 PF14181 YqfQ-like protein KS08_12690 PF02401 LytB protein KS08_12695 PF01784 NIF3 (NGG1p interacting factor 3) KS08_12700 PF04816 tRNA (adenine(22)-N(1))-methyltransferase KS08_12705 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KS08_12710 PF03979 Sigma-70 factor, region 1.1 KS08_12710 PF04545 Sigma-70, region 4 KS08_12710 PF04539 Sigma-70 region 3 KS08_12710 PF04542 Sigma-70 region 2 KS08_12710 PF00140 Sigma-70 factor, region 1.2 KS08_12715 PF01807 CHC2 zinc finger KS08_12715 PF10410 DnaB-helicase binding domain of primase KS08_12715 PF08275 DNA primase catalytic core, N-terminal domain KS08_12720 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 KS08_12725 PF03618 Kinase/pyrophosphorylase KS08_12730 PF00571 CBS domain KS08_12730 PF08279 HTH domain KS08_12735 PF02092 Glycyl-tRNA synthetase beta subunit KS08_12740 PF02091 Glycyl-tRNA synthetase alpha subunit KS08_12745 PF02565 Recombination protein O C terminal KS08_12745 PF11967 Recombination protein O N terminal KS08_12750 PF14006 YqzL-like protein KS08_12755 PF01926 50S ribosome-binding GTPase KS08_12755 PF07650 KH domain KS08_12760 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KS08_12765 PF01219 Prokaryotic diacylglycerol kinase KS08_12770 PF02130 Uncharacterized protein family UPF0054 KS08_12775 PF07698 7TM receptor with intracellular HD hydrolase KS08_12775 PF07697 7TM-HD extracellular KS08_12775 PF01966 HD domain KS08_12780 PF02562 PhoH-like protein KS08_12785 PF06898 Putative stage IV sporulation protein YqfD KS08_12790 PF07873 YabP family KS08_12800 PF12127 SigmaW regulon antibacterial KS08_12805 PF01972 Serine dehydrogenase proteinase KS08_12805 PF01957 NfeD-like C-terminal, partner-binding KS08_12810 PF09424 Yqey-like protein KS08_12815 PF01165 Ribosomal protein S21 KS08_12820 PF02690 Na+/Pi-cotransporter KS08_12825 PF04055 Radical SAM superfamily KS08_12825 PF01938 TRAM domain KS08_12825 PF00919 Uncharacterized protein family UPF0004 KS08_12830 PF04452 RNA methyltransferase KS08_12840 PF00226 DnaJ domain KS08_12840 PF01556 DnaJ C terminal domain KS08_12840 PF00684 DnaJ central domain KS08_12845 PF00012 Hsp70 protein KS08_12850 PF01025 GrpE KS08_12855 PF01628 HrcA protein C terminal domain KS08_12860 PF04055 Radical SAM superfamily KS08_12860 PF06969 HemN C-terminal domain KS08_12865 PF06421 GTP-binding protein LepA C-terminus KS08_12865 PF03144 Elongation factor Tu domain 2 KS08_12865 PF00679 Elongation factor G C-terminus KS08_12865 PF00009 Elongation factor Tu GTP binding domain KS08_12870 PF12438 Protein of unknown function (DUF3679) KS08_12875 PF07454 Stage II sporulation protein P (SpoIIP) KS08_12880 PF03418 Germination protease KS08_12885 PF01649 Ribosomal protein S20 KS08_12890 PF06144 DNA polymerase III, delta subunit KS08_12895 PF14141 YqzM-like protein KS08_12900 PF03772 Competence protein KS08_12900 PF13567 Domain of unknown function (DUF4131) KS08_12900 PF00753 Metallo-beta-lactamase superfamily KS08_12905 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region KS08_12910 PF10531 SLBB domain KS08_12915 PF03807 NADP oxidoreductase coenzyme F420-dependent KS08_12915 PF14748 Pyrroline-5-carboxylate reductase dimerisation KS08_12920 PF13649 Methyltransferase domain KS08_12930 PF01966 HD domain KS08_12935 PF01467 Cytidylyltransferase-like KS08_12940 PF01985 CRS1 / YhbY (CRM) domain KS08_12945 PF08501 Shikimate dehydrogenase substrate binding domain KS08_12945 PF01488 Shikimate / quinate 5-dehydrogenase KS08_12945 PF18317 Shikimate 5'-dehydrogenase C-terminal domain KS08_12950 PF01926 50S ribosome-binding GTPase KS08_12960 PF08970 Sporulation inhibitor A KS08_12965 PF00657 GDSL-like Lipase/Acylhydrolase KS08_12970 PF01522 Polysaccharide deacetylase KS08_12975 PF01471 Putative peptidoglycan binding domain KS08_12975 PF01510 N-acetylmuramoyl-L-alanine amidase KS08_12980 PF09335 SNARE associated Golgi protein KS08_12995 PF04542 Sigma-70 region 2 KS08_12995 PF04545 Sigma-70, region 4 KS08_13015 PF04542 Sigma-70 region 2 KS08_13015 PF04545 Sigma-70, region 4 KS08_13030 PF07690 Major Facilitator Superfamily KS08_13035 PF05163 DinB family KS08_13050 PF01418 Helix-turn-helix domain, rpiR family KS08_13050 PF01380 SIS domain KS08_13055 PF01238 Phosphomannose isomerase type I KS08_13060 PF02378 Phosphotransferase system, EIIC KS08_13060 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KS08_13060 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit KS08_13065 PF08279 HTH domain KS08_13065 PF05043 Mga helix-turn-helix domain KS08_13065 PF00874 PRD domain KS08_13065 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 KS08_13070 PF12706 Beta-lactamase superfamily domain KS08_13075 PF04073 Aminoacyl-tRNA editing domain KS08_13080 PF03466 LysR substrate binding domain KS08_13080 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KS08_13085 PF07690 Major Facilitator Superfamily KS08_13090 PF00667 FAD binding domain KS08_13090 PF00258 Flavodoxin KS08_13090 PF00175 Oxidoreductase NAD-binding domain KS08_13090 PF00067 Cytochrome P450 KS08_13095 PF00440 Bacterial regulatory proteins, tetR family KS08_13095 PF16295 Tetracyclin repressor-like, C-terminal domain KS08_13100 PF08241 Methyltransferase domain KS08_13105 PF09501 Probable sporulation protein (Bac_small_yrzI) KS08_13110 PF01226 Formate/nitrite transporter KS08_13115 PF10057 Uncharacterized conserved protein (DUF2294) KS08_13120 PF01568 Molydopterin dinucleotide binding domain KS08_13120 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region KS08_13120 PF00037 4Fe-4S binding domain KS08_13120 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KS08_13120 PF00384 Molybdopterin oxidoreductase KS08_13125 PF07849 Protein of unknown function (DUF1641) KS08_13130 PF14143 YrhC-like protein KS08_13135 PF01053 Cys/Met metabolism PLP-dependent enzyme KS08_13140 PF00291 Pyridoxal-phosphate dependent enzyme KS08_13145 PF01048 Phosphorylase superfamily KS08_13150 PF13649 Methyltransferase domain KS08_13155 PF10750 Protein of unknown function (DUF2536) KS08_13160 PF07423 Domain of unknown function (DUF1510) KS08_13165 PF00905 Penicillin binding protein transpeptidase domain KS08_13165 PF03717 Penicillin-binding Protein dimerisation domain KS08_13170 PF01272 Transcription elongation factor, GreA/GreB, C-term KS08_13170 PF03449 Transcription elongation factor, N-terminal KS08_13175 PF00485 Phosphoribulokinase / Uridine kinase family KS08_13195 PF02618 YceG-like family KS08_13200 PF06949 Protein of unknown function (DUF1292) KS08_13205 PF03652 Holliday junction resolvase KS08_13210 PF06135 IreB regulatory phosphoprotein KS08_13215 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KS08_13215 PF01411 tRNA synthetases class II (A) KS08_13215 PF02272 DHHA1 domain KS08_13220 PF01594 AI-2E family transporter KS08_13225 PF00005 ABC transporter KS08_13230 PF00497 Bacterial extracellular solute-binding proteins, family 3 KS08_13235 PF00528 Binding-protein-dependent transport system inner membrane component KS08_13240 PF00528 Binding-protein-dependent transport system inner membrane component KS08_13245 PF13056 Protein of unknown function (DUF3918) KS08_13255 PF05239 PRC-barrel domain KS08_13260 PF13538 UvrD-like helicase C-terminal domain KS08_13260 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain KS08_13260 PF14490 Helix-hairpin-helix containing domain KS08_13265 PF07719 Tetratricopeptide repeat KS08_13265 PF13181 Tetratricopeptide repeat KS08_13275 PF00266 Aminotransferase class-V KS08_13280 PF02082 Transcriptional regulator KS08_13285 PF05496 Holliday junction DNA helicase RuvB P-loop domain KS08_13285 PF12002 MgsA AAA+ ATPase C terminal KS08_13285 PF16193 AAA C-terminal domain KS08_13290 PF00899 ThiF family KS08_13300 PF01336 OB-fold nucleic acid binding domain KS08_13300 PF00152 tRNA synthetases class II (D, K and N) KS08_13300 PF02938 GAD domain KS08_13305 PF03129 Anticodon binding domain KS08_13305 PF13393 Histidyl-tRNA synthetase KS08_13315 PF17449 Uncharacterized YrzK-like KS08_13320 PF08239 Bacterial SH3 domain KS08_13320 PF01520 N-acetylmuramoyl-L-alanine amidase KS08_13325 PF02580 D-Tyr-tRNA(Tyr) deacylase KS08_13330 PF02824 TGS domain KS08_13330 PF13291 ACT domain KS08_13330 PF04607 Region found in RelA / SpoT proteins KS08_13335 PF00156 Phosphoribosyl transferase domain KS08_13340 PF10141 Single-strand DNA-specific exonuclease, C terminal domain KS08_13340 PF17768 RecJ OB domain KS08_13340 PF01368 DHH family KS08_13340 PF02272 DHHA1 domain KS08_13345 PF06305 Lipopolysaccharide assembly protein A domain KS08_13350 PF02080 TrkA-C domain KS08_13355 PF07549 SecD/SecF GG Motif KS08_13355 PF02355 Protein export membrane protein KS08_13360 PF13797 Post-transcriptional regulator KS08_13365 PF01943 Polysaccharide biosynthesis protein KS08_13365 PF14667 Polysaccharide biosynthesis C-terminal domain KS08_13370 PF04239 Protein of unknown function (DUF421) KS08_13375 PF12670 Protein of unknown function (DUF3792) KS08_13380 PF02699 Preprotein translocase subunit KS08_13385 PF01702 Queuine tRNA-ribosyltransferase KS08_13390 PF02547 Queuosine biosynthesis protein KS08_13395 PF11146 Protein of unknown function (DUF2905) KS08_13400 PF05496 Holliday junction DNA helicase RuvB P-loop domain KS08_13400 PF05491 RuvB C-terminal winged helix domain KS08_13400 PF17864 RuvB AAA lid domain KS08_13405 PF07499 RuvA, C-terminal domain KS08_13405 PF01330 RuvA N terminal domain KS08_13410 PF08977 Bypass of Forespore C, N terminal KS08_13410 PF08955 BofC C-terminal domain KS08_13415 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) KS08_13420 PF01476 LysM domain KS08_13425 PF02445 Quinolinate synthetase A protein KS08_13430 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain KS08_13430 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain KS08_13435 PF02910 Fumarate reductase flavoprotein C-term KS08_13435 PF00890 FAD binding domain KS08_13440 PF00266 Aminotransferase class-V KS08_13445 PF08279 HTH domain KS08_13445 PF02829 3H domain KS08_13450 PF00800 Prephenate dehydratase KS08_13450 PF01842 ACT domain KS08_13455 PF01842 ACT domain KS08_13460 PF01926 50S ribosome-binding GTPase KS08_13460 PF01018 GTP1/OBG KS08_13460 PF09269 Domain of unknown function (DUF1967) KS08_13465 PF14682 Sporulation initiation phospho-transferase B, C-terminal KS08_13465 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain KS08_13470 PF01016 Ribosomal L27 protein KS08_13475 PF04327 Cysteine protease Prp KS08_13480 PF00829 Ribosomal prokaryotic L21 protein KS08_13485 PF02163 Peptidase family M50 KS08_13490 PF01551 Peptidase family M23 KS08_13495 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain KS08_13500 PF03775 Septum formation inhibitor MinC, C-terminal domain KS08_13505 PF04093 rod shape-determining protein MreD KS08_13510 PF04085 rod shape-determining protein MreC KS08_13520 PF04002 RadC-like JAB domain KS08_13525 PF02545 Maf-like protein KS08_13530 PF05036 Sporulation related domain KS08_13535 PF06750 Bacterial Peptidase A24 N-terminal domain KS08_13535 PF01478 Type IV leader peptidase family KS08_13540 PF08245 Mur ligase middle domain KS08_13540 PF02875 Mur ligase family, glutamate ligase domain KS08_13545 PF08264 Anticodon-binding domain of tRNA KS08_13545 PF00133 tRNA synthetases class I (I, L, M and V) KS08_13545 PF10458 Valyl tRNA synthetase tRNA binding arm KS08_13560 PF01476 LysM domain KS08_13565 PF00202 Aminotransferase class-III KS08_13570 PF00490 Delta-aminolevulinic acid dehydratase KS08_13575 PF02602 Uroporphyrinogen-III synthase HemD KS08_13580 PF03900 Porphobilinogen deaminase, C-terminal domain KS08_13580 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain KS08_13585 PF01578 Cytochrome C assembly protein KS08_13590 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain KS08_13590 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain KS08_13590 PF01488 Shikimate / quinate 5-dehydrogenase KS08_13600 PF01926 50S ribosome-binding GTPase KS08_13605 PF00004 ATPase family associated with various cellular activities (AAA) KS08_13605 PF05362 Lon protease (S16) C-terminal proteolytic domain KS08_13605 PF02190 ATP-dependent protease La (LON) substrate-binding domain KS08_13610 PF05362 Lon protease (S16) C-terminal proteolytic domain KS08_13610 PF00004 ATPase family associated with various cellular activities (AAA) KS08_13615 PF07724 AAA domain (Cdc48 subfamily) KS08_13615 PF10431 C-terminal, D2-small domain, of ClpB protein KS08_13615 PF06689 ClpX C4-type zinc finger KS08_13620 PF05697 Bacterial trigger factor protein (TF) KS08_13620 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase KS08_13620 PF05698 Bacterial trigger factor protein (TF) C-terminus KS08_13630 PF00694 Aconitase C-terminal domain KS08_13635 PF00330 Aconitase family (aconitate hydratase) KS08_13640 PF00180 Isocitrate/isopropylmalate dehydrogenase KS08_13645 PF08502 LeuA allosteric (dimerisation) domain KS08_13645 PF00682 HMGL-like KS08_13650 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain KS08_13650 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain KS08_13655 PF10369 Small subunit of acetolactate synthase KS08_13655 PF01842 ACT domain KS08_13660 PF00205 Thiamine pyrophosphate enzyme, central domain KS08_13660 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KS08_13660 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KS08_13685 PF12850 Calcineurin-like phosphoesterase superfamily domain KS08_13690 PF01725 Ham1 family KS08_13695 PF03725 3' exoribonuclease family, domain 2 KS08_13695 PF01138 3' exoribonuclease family, domain 1 KS08_13700 PF10646 Sporulation and spore germination KS08_13705 PF01177 Asp/Glu/Hydantoin racemase KS08_13710 PF01047 MarR family KS08_13715 PF00196 Bacterial regulatory proteins, luxR family KS08_13720 PF03061 Thioesterase superfamily KS08_13725 PF13085 2Fe-2S iron-sulfur cluster binding domain KS08_13725 PF13183 4Fe-4S dicluster domain KS08_13730 PF00890 FAD binding domain KS08_13730 PF02910 Fumarate reductase flavoprotein C-term KS08_13735 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit KS08_13745 PF10702 Protein of unknown function (DUF2507) KS08_13750 PF00696 Amino acid kinase family KS08_13750 PF13840 ACT domain KS08_13750 PF01842 ACT domain KS08_13755 PF08459 UvrC Helix-hairpin-helix N-terminal KS08_13755 PF01541 GIY-YIG catalytic domain KS08_13755 PF02151 UvrB/uvrC motif KS08_13760 PF00085 Thioredoxin KS08_13765 PF06964 Alpha-L-arabinofuranosidase C-terminal domain KS08_13770 PF00766 Electron transfer flavoprotein FAD-binding domain KS08_13770 PF01012 Electron transfer flavoprotein domain KS08_13775 PF01012 Electron transfer flavoprotein domain KS08_13780 PF00378 Enoyl-CoA hydratase/isomerase KS08_13785 PF00440 Bacterial regulatory proteins, tetR family KS08_13785 PF08359 YsiA-like protein, C-terminal region KS08_13790 PF13193 AMP-binding enzyme C-terminal domain KS08_13790 PF00501 AMP-binding enzyme KS08_13795 PF10924 Protein of unknown function (DUF2711) KS08_13800 PF03994 Domain of Unknown Function (DUF350) KS08_13805 PF01713 Smr domain KS08_13805 PF00488 MutS domain V KS08_13810 PF02811 PHP domain KS08_13810 PF14716 Helix-hairpin-helix domain KS08_13810 PF14791 DNA polymerase beta thumb KS08_13815 PF02674 Colicin V production protein KS08_13820 PF05164 Cell division protein ZapA KS08_13825 PF11858 Domain of unknown function (DUF3378) KS08_13825 PF01351 Ribonuclease HII KS08_13830 PF03483 B3/4 domain KS08_13830 PF03484 tRNA synthetase B5 domain KS08_13830 PF03147 Ferredoxin-fold anticodon binding domain KS08_13830 PF01588 Putative tRNA binding domain KS08_13830 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain KS08_13835 PF01409 tRNA synthetases class II core domain (F) KS08_13835 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain KS08_13840 PF08032 RNA 2'-O ribose methyltransferase substrate binding KS08_13840 PF00588 SpoU rRNA Methylase family KS08_13845 PF14098 Small, acid-soluble spore protein I KS08_13850 PF05651 Putative sugar diacid recognition KS08_13850 PF13556 PucR C-terminal helix-turn-helix domain KS08_13850 PF17853 GGDEF-like domain KS08_13855 PF02913 FAD linked oxidases, C-terminal domain KS08_13855 PF01565 FAD binding domain KS08_13860 PF02754 Cysteine-rich domain KS08_13860 PF13183 4Fe-4S dicluster domain KS08_13865 PF02554 Carbon starvation protein CstA KS08_13865 PF13722 5TM C-terminal transporter carbon starvation CstA KS08_13870 PF06964 Alpha-L-arabinofuranosidase C-terminal domain KS08_13875 PF00528 Binding-protein-dependent transport system inner membrane component KS08_13880 PF00528 Binding-protein-dependent transport system inner membrane component KS08_13885 PF01547 Bacterial extracellular solute-binding protein KS08_13890 PF13685 Iron-containing alcohol dehydrogenase KS08_13895 PF13344 Haloacid dehalogenase-like hydrolase KS08_13900 PF00596 Class II Aldolase and Adducin N-terminal domain KS08_13905 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KS08_13905 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KS08_13910 PF11762 L-arabinose isomerase C-terminal domain KS08_13910 PF02610 L-arabinose isomerase KS08_13915 PF04616 Glycosyl hydrolases family 43 KS08_13920 PF05343 M42 glutamyl aminopeptidase KS08_13930 PF06961 Protein of unknown function (DUF1294) KS08_13935 PF00453 Ribosomal protein L20 KS08_13940 PF01632 Ribosomal protein L35 KS08_13945 PF00707 Translation initiation factor IF-3, C-terminal domain KS08_13945 PF05198 Translation initiation factor IF-3, N-terminal domain KS08_13950 PF04172 LrgB-like family KS08_13955 PF03788 LrgA family KS08_13960 PF00072 Response regulator receiver domain KS08_13960 PF04397 LytTr DNA-binding domain KS08_13965 PF06580 Histidine kinase KS08_13965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS08_13965 PF07694 5TMR of 5TMR-LYT KS08_13975 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain KS08_13975 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) KS08_13975 PF02824 TGS domain KS08_13975 PF03129 Anticodon binding domain KS08_13980 PF08812 YtxC-like family KS08_13985 PF09335 SNARE associated Golgi protein KS08_13990 PF01695 IstB-like ATP binding protein KS08_13990 PF07319 Primosomal protein DnaI N-terminus KS08_13995 PF07261 Replication initiation and membrane attachment KS08_14000 PF03477 ATP cone domain KS08_14005 PF02675 S-adenosylmethionine decarboxylase KS08_14010 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KS08_14010 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KS08_14015 PF01638 HxlR-like helix-turn-helix KS08_14020 PF07690 Major Facilitator Superfamily KS08_14025 PF00248 Aldo/keto reductase family KS08_14030 PF01121 Dephospho-CoA kinase KS08_14035 PF02659 Putative manganese efflux pump KS08_14040 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain KS08_14040 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain KS08_14040 PF06827 Zinc finger found in FPG and IleRS KS08_14045 PF01367 5'-3' exonuclease, C-terminal SAM fold KS08_14045 PF00476 DNA polymerase family A KS08_14045 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain KS08_14050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS08_14050 PF00512 His Kinase A (phospho-acceptor) domain KS08_14050 PF00989 PAS fold KS08_14050 PF16736 Single Cache-like KS08_14055 PF00486 Transcriptional regulatory protein, C terminal KS08_14055 PF00072 Response regulator receiver domain KS08_14060 PF00056 lactate/malate dehydrogenase, NAD binding domain KS08_14060 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain KS08_14065 PF00180 Isocitrate/isopropylmalate dehydrogenase KS08_14070 PF00285 Citrate synthase, C-terminal domain KS08_14075 PF04284 Protein of unknown function (DUF441) KS08_14080 PF01594 AI-2E family transporter KS08_14085 PF04186 FxsA cytoplasmic membrane protein KS08_14090 PF00224 Pyruvate kinase, barrel domain KS08_14090 PF02887 Pyruvate kinase, alpha/beta domain KS08_14090 PF00391 PEP-utilising enzyme, mobile domain KS08_14095 PF00365 Phosphofructokinase KS08_14100 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit KS08_14105 PF01039 Carboxyl transferase domain KS08_14105 PF17848 Acetyl-coA carboxylase zinc finger domain KS08_14115 PF00390 Malic enzyme, N-terminal domain KS08_14115 PF03949 Malic enzyme, NAD binding domain KS08_14120 PF14579 Helix-hairpin-helix motif KS08_14120 PF02811 PHP domain KS08_14120 PF01336 OB-fold nucleic acid binding domain KS08_14120 PF17657 Bacterial DNA polymerase III alpha subunit finger domain KS08_14120 PF07733 Bacterial DNA polymerase III alpha NTPase domain KS08_14125 PF14034 Sporulation protein YtrH KS08_14140 PF02272 DHHA1 domain KS08_14140 PF01368 DHH family KS08_14145 PF14007 YtpI-like protein KS08_14150 PF00392 Bacterial regulatory proteins, gntR family KS08_14150 PF07085 DRTGG domain KS08_14150 PF03061 Thioesterase superfamily KS08_14150 PF00571 CBS domain KS08_14170 PF14698 Argininosuccinate lyase C-terminal KS08_14170 PF00206 Lyase KS08_14175 PF00764 Arginosuccinate synthase KS08_14180 PF00994 Probable molybdopterin binding domain KS08_14185 PF00871 Acetokinase family KS08_14190 PF02384 N-6 DNA Methylase KS08_14195 PF08534 Redoxin KS08_14200 PF09579 Sporulation protein YtfJ (Spore_YtfJ) KS08_14205 PF11167 Protein of unknown function (DUF2953) KS08_14210 PF06271 RDD family KS08_14215 PF01343 Peptidase family S49 KS08_14220 PF01513 ATP-NAD kinase KS08_14225 PF07969 Amidohydrolase family KS08_14230 PF00501 AMP-binding enzyme KS08_14230 PF13193 AMP-binding enzyme C-terminal domain KS08_14235 PF00269 Small, acid-soluble spore proteins, alpha/beta type KS08_14240 PF02568 Thiamine biosynthesis protein (ThiI) KS08_14240 PF02926 THUMP domain KS08_14245 PF00266 Aminotransferase class-V KS08_14250 PF05525 Branched-chain amino acid transport protein KS08_14255 PF06160 Septation ring formation regulator, EzrA KS08_14260 PF02811 PHP domain KS08_14265 PF00440 Bacterial regulatory proteins, tetR family KS08_14270 PF13185 GAF domain KS08_14275 PF00990 Diguanylate cyclase, GGDEF domain KS08_14280 PF00163 Ribosomal protein S4/S9 N-terminal domain KS08_14280 PF01479 S4 domain KS08_14285 PF00175 Oxidoreductase NAD-binding domain KS08_14285 PF00042 Globin KS08_14285 PF00970 Oxidoreductase FAD-binding domain KS08_14295 PF01965 DJ-1/PfpI family KS08_14310 PF16916 Dimerisation domain of Zinc Transporter KS08_14310 PF01545 Cation efflux family KS08_14315 PF11495 Archaeal transcriptional regulator TrmB KS08_14315 PF01978 Sugar-specific transcriptional regulator TrmB KS08_14320 PF03591 AzlC protein KS08_14330 PF00579 tRNA synthetases class I (W and Y) KS08_14330 PF01479 S4 domain KS08_14335 PF13193 AMP-binding enzyme C-terminal domain KS08_14335 PF00501 AMP-binding enzyme KS08_14340 PF00583 Acetyltransferase (GNAT) family KS08_14345 PF00571 CBS domain KS08_14350 PF00850 Histone deacetylase domain KS08_14355 PF13677 Membrane MotB of proton-channel complex MotA/MotB KS08_14355 PF00691 OmpA family KS08_14360 PF01618 MotA/TolQ/ExbB proton channel family KS08_14365 PF00356 Bacterial regulatory proteins, lacI family KS08_14370 PF00793 DAHP synthetase I family KS08_14370 PF01817 Chorismate mutase type II KS08_14375 PF11009 Protein of unknown function (DUF2847) KS08_14380 PF12732 YtxH-like protein KS08_14385 PF06103 Bacterial protein of unknown function (DUF948) KS08_14390 PF02875 Mur ligase family, glutamate ligase domain KS08_14390 PF01225 Mur ligase family, catalytic domain KS08_14390 PF08245 Mur ligase middle domain KS08_14395 PF01580 FtsK/SpoIIIE family KS08_14395 PF09397 Ftsk gamma domain KS08_14395 PF17854 FtsK alpha domain KS08_14400 PF14794 Domain of unknown function (DUF4479) KS08_14400 PF01588 Putative tRNA binding domain KS08_14405 PF07285 Protein of unknown function (DUF1444) KS08_14410 PF00085 Thioredoxin KS08_14415 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ KS08_14420 PF05343 M42 glutamyl aminopeptidase KS08_14425 PF03413 Peptidase propeptide and YPEB domain KS08_14430 PF00390 Malic enzyme, N-terminal domain KS08_14430 PF03949 Malic enzyme, NAD binding domain KS08_14435 PF00753 Metallo-beta-lactamase superfamily KS08_14440 PF02390 Putative methyltransferase KS08_14445 PF14165 YtzH-like protein KS08_14450 PF01636 Phosphotransferase enzyme family KS08_14455 PF00781 Diacylglycerol kinase catalytic domain KS08_14470 PF00291 Pyridoxal-phosphate dependent enzyme KS08_14475 PF01546 Peptidase family M20/M25/M40 KS08_14480 PF00860 Permease family KS08_14485 PF05975 Bacterial ABC transporter protein EcsB KS08_14490 PF00005 ABC transporter KS08_14495 PF08220 DeoR-like helix-turn-helix domain KS08_14500 PF00849 RNA pseudouridylate synthase KS08_14500 PF01479 S4 domain KS08_14505 PF01943 Polysaccharide biosynthesis protein KS08_14505 PF14667 Polysaccharide biosynthesis C-terminal domain KS08_14515 PF02028 BCCT, betaine/carnitine/choline family transporter KS08_14520 PF10957 Sporulation protein Cse60 KS08_14545 PF11975 Family 4 glycosyl hydrolase C-terminal domain KS08_14545 PF02056 Family 4 glycosyl hydrolase KS08_14555 PF00581 Rhodanese-like domain KS08_14560 PF13603 Leucyl-tRNA synthetase, Domain 2 KS08_14560 PF08264 Anticodon-binding domain of tRNA KS08_14560 PF00133 tRNA synthetases class I (I, L, M and V) KS08_14560 PF09334 tRNA synthetases class I (M) KS08_14565 PF14074 Protein of unknown function (DUF4257) KS08_14570 PF01740 STAS domain KS08_14570 PF13426 PAS domain KS08_14575 PF07690 Major Facilitator Superfamily KS08_14580 PF09529 Integral membrane protein (intg_mem_TP0381) KS08_14585 PF02687 FtsX-like permease family KS08_14590 PF00005 ABC transporter KS08_14595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS08_14600 PF00486 Transcriptional regulatory protein, C terminal KS08_14600 PF00072 Response regulator receiver domain KS08_14605 PF02687 FtsX-like permease family KS08_14605 PF12704 MacB-like periplasmic core domain KS08_14610 PF00005 ABC transporter KS08_14630 PF00005 ABC transporter KS08_14635 PF00392 Bacterial regulatory proteins, gntR family KS08_14645 PF10732 Protein of unknown function (DUF2524) KS08_14650 PF16199 Radical_SAM C-terminal domain KS08_14650 PF04055 Radical SAM superfamily KS08_14655 PF06962 Putative rRNA methylase KS08_14665 PF10776 Protein of unknown function (DUF2600) KS08_14670 PF12146 Serine aminopeptidase, S33 KS08_14675 PF00132 Bacterial transferase hexapeptide (six repeats) KS08_14680 PF00324 Amino acid permease KS08_14685 PF00733 Asparagine synthase KS08_14685 PF13537 Glutamine amidotransferase domain KS08_14690 PF00438 S-adenosylmethionine synthetase, N-terminal domain KS08_14690 PF02772 S-adenosylmethionine synthetase, central domain KS08_14690 PF02773 S-adenosylmethionine synthetase, C-terminal domain KS08_14695 PF01293 Phosphoenolpyruvate carboxykinase KS08_14700 PF10763 Protein of unknown function (DUF2584) KS08_14705 PF00326 Prolyl oligopeptidase family KS08_14715 PF00005 ABC transporter KS08_14720 PF00528 Binding-protein-dependent transport system inner membrane component KS08_14725 PF00293 NUDIX domain KS08_14730 PF05105 Bacteriophage holin family KS08_14735 PF00210 Ferritin-like domain KS08_14745 PF13115 YtkA-like KS08_14750 PF02664 S-Ribosylhomocysteinase (LuxS) KS08_14755 PF01809 Putative membrane protein insertion efficiency factor KS08_14760 PF00484 Carbonic anhydrase KS08_14765 PF01197 Ribosomal protein L31 KS08_14770 PF01654 Cytochrome bd terminal oxidase subunit I KS08_14775 PF02322 Cytochrome bd terminal oxidase subunit II KS08_14780 PF07561 Domain of Unknown Function (DUF1540) KS08_14785 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain KS08_14785 PF13378 Enolase C-terminal domain-like KS08_14790 PF13193 AMP-binding enzyme C-terminal domain KS08_14790 PF00501 AMP-binding enzyme KS08_14795 PF00378 Enoyl-CoA hydratase/isomerase KS08_14800 PF00561 alpha/beta hydrolase fold KS08_14805 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KS08_14805 PF16582 Middle domain of thiamine pyrophosphate KS08_14805 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KS08_14810 PF00425 chorismate binding enzyme KS08_14815 PF01258 Prokaryotic dksA/traR C4-type zinc finger KS08_14820 PF03073 TspO/MBR family KS08_14945 PF09515 Thiamine transporter protein (Thia_YuaJ) KS08_14950 PF15975 Flotillin KS08_14950 PF01145 SPFH domain / Band 7 family KS08_14960 PF12867 DinB superfamily KS08_14970 PF00465 Iron-containing alcohol dehydrogenase KS08_14985 PF17735 Biofilm surface layer A KS08_14990 PF02080 TrkA-C domain KS08_14990 PF02254 TrkA-N domain KS08_14995 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase KS08_14995 PF13457 GW (Gly-Tryp) dipeptide domain KS08_15000 PF00042 Globin KS08_15000 PF00175 Oxidoreductase NAD-binding domain KS08_15000 PF00970 Oxidoreductase FAD-binding domain KS08_15020 PF13176 Tetratricopeptide repeat KS08_15020 PF18801 response regulator aspartate phosphatase H, N terminal KS08_15075 PF01510 N-acetylmuramoyl-L-alanine amidase KS08_15080 PF05105 Bacteriophage holin family KS08_15100 PF11962 Peptidase_G2, IMC autoproteolytic cleavage domain KS08_15100 PF12708 Pectate lyase superfamily protein KS08_15115 PF01464 Transglycosylase SLT domain KS08_15250 PF00589 Phage integrase family KS08_15250 PF14659 Phage integrase, N-terminal SAM-like domain KS08_15260 PF02673 Bacitracin resistance protein BacA KS08_15265 PF01594 AI-2E family transporter KS08_15270 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KS08_15270 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KS08_15275 PF01965 DJ-1/PfpI family KS08_15280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KS08_15280 PF02743 Cache domain KS08_15280 PF00672 HAMP domain KS08_15285 PF02743 Cache domain KS08_15285 PF00672 HAMP domain KS08_15285 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KS08_15290 PF00672 HAMP domain KS08_15290 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KS08_15290 PF02743 Cache domain KS08_15295 PF00672 HAMP domain KS08_15295 PF02743 Cache domain KS08_15295 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain KS08_15310 PF03060 Nitronate monooxygenase KS08_15320 PF16657 Maltogenic Amylase, C-terminal domain KS08_15320 PF00128 Alpha amylase, catalytic domain KS08_15325 PF01595 Cyclin M transmembrane N-terminal domain KS08_15325 PF03471 Transporter associated domain KS08_15325 PF00571 CBS domain KS08_15330 PF04298 Putative neutral zinc metallopeptidase KS08_15340 PF11458 Membrane-integrating protein Mistic KS08_15345 PF02254 TrkA-N domain KS08_15345 PF07885 Ion channel KS08_15350 PF08868 YugN-like family KS08_15360 PF00342 Phosphoglucose isomerase KS08_15365 PF00465 Iron-containing alcohol dehydrogenase KS08_15370 PF00465 Iron-containing alcohol dehydrogenase KS08_15375 PF04070 Domain of unknown function (DUF378) KS08_15380 PF00575 S1 RNA binding domain KS08_15385 PF00155 Aminotransferase class I and II KS08_15390 PF01037 Lrp/AsnC ligand binding domain KS08_15395 PF08386 TAP-like protein KS08_15395 PF00561 alpha/beta hydrolase fold KS08_15400 PF08958 Domain of unknown function (DUF1871) KS08_15405 PF00155 Aminotransferase class I and II KS08_15410 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS08_15410 PF00512 His Kinase A (phospho-acceptor) domain KS08_15415 PF08810 Kinase associated protein B KS08_15420 PF00929 Exonuclease KS08_15425 PF07690 Major Facilitator Superfamily KS08_15430 PF00912 Transglycosylase KS08_15430 PF00905 Penicillin binding protein transpeptidase domain KS08_15435 PF04134 Protein of unknown function, DUF393 KS08_15440 PF17328 Family of unknown function (DUF5366) KS08_15445 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain KS08_15445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS08_15445 PF17203 Single cache domain 3 KS08_15445 PF00989 PAS fold KS08_15450 PF00072 Response regulator receiver domain KS08_15480 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus KS08_15480 PF00361 Proton-conducting membrane transporter KS08_15480 PF13244 Domain of unknown function (DUF4040) KS08_15485 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter KS08_15490 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L KS08_15495 PF00361 Proton-conducting membrane transporter KS08_15500 PF01899 Na+/H+ ion antiporter subunit KS08_15505 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) KS08_15510 PF03334 Na+/H+ antiporter subunit KS08_15515 PF03061 Thioesterase superfamily KS08_15520 PF00072 Response regulator receiver domain KS08_15520 PF00196 Bacterial regulatory proteins, luxR family KS08_15525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS08_15525 PF07730 Histidine kinase KS08_15535 PF00348 Polyprenyl synthetase KS08_15540 PF08181 DegQ (SacQ) family KS08_15550 PF00563 EAL domain KS08_15550 PF08668 HDOD domain KS08_15555 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain KS08_15555 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family KS08_15555 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain KS08_15560 PF00857 Isochorismatase family KS08_15565 PF07997 Protein of unknown function (DUF1694) KS08_15570 PF14166 YueH-like protein KS08_15575 PF10676 Spore germination protein gerPA/gerPF KS08_15580 PF01594 AI-2E family transporter KS08_15585 PF10842 Protein of unknown function (DUF2642) KS08_15590 PF01966 HD domain KS08_15595 PF00106 short chain dehydrogenase KS08_15600 PF17355 Family of unknown function (DUF5383) KS08_15610 PF12538 DNA transporter KS08_15610 PF01580 FtsK/SpoIIIE family KS08_15615 PF10140 WXG100 protein secretion system (Wss), protein YukC KS08_15620 PF08817 WXG100 protein secretion system (Wss), protein YukD KS08_15625 PF06013 Proteins of 100 residues with WXG KS08_15630 PF06018 CodY GAF-like domain KS08_15630 PF13556 PucR C-terminal helix-turn-helix domain KS08_15630 PF17853 GGDEF-like domain KS08_15635 PF01262 Alanine dehydrogenase/PNT, C-terminal domain KS08_15635 PF05222 Alanine dehydrogenase/PNT, N-terminal domain KS08_15640 PF10042 Uncharacterized conserved protein (DUF2278) KS08_15645 PF03621 MbtH-like protein KS08_15650 PF00975 Thioesterase domain KS08_15650 PF00550 Phosphopantetheine attachment site KS08_15650 PF00668 Condensation domain KS08_15650 PF13193 AMP-binding enzyme C-terminal domain KS08_15650 PF00501 AMP-binding enzyme KS08_15655 PF00550 Phosphopantetheine attachment site KS08_15655 PF00857 Isochorismatase family KS08_15660 PF13193 AMP-binding enzyme C-terminal domain KS08_15660 PF00501 AMP-binding enzyme KS08_15665 PF00425 chorismate binding enzyme KS08_15670 PF00106 short chain dehydrogenase KS08_15675 PF00756 Putative esterase KS08_15680 PF00174 Oxidoreductase molybdopterin binding domain KS08_15685 PF02632 BioY family KS08_15690 PF13726 Na+-H+ antiporter family KS08_15690 PF03553 Na+/H+ antiporter family KS08_15695 PF02789 Cytosol aminopeptidase family, N-terminal domain KS08_15695 PF00883 Cytosol aminopeptidase family, catalytic domain KS08_15700 PF02681 Divergent PAP2 family KS08_15705 PF06725 3D domain KS08_15710 PF14068 Putative membrane protein KS08_15715 PF07992 Pyridine nucleotide-disulphide oxidoreductase KS08_15720 PF07992 Pyridine nucleotide-disulphide oxidoreductase KS08_15725 PF00478 IMP dehydrogenase / GMP reductase domain KS08_15740 PF00005 ABC transporter KS08_15770 PF00106 short chain dehydrogenase KS08_15790 PF01471 Putative peptidoglycan binding domain KS08_15790 PF01476 LysM domain KS08_15790 PF01510 N-acetylmuramoyl-L-alanine amidase KS08_15795 PF10960 BhlA holin family KS08_15815 PF11962 Peptidase_G2, IMC autoproteolytic cleavage domain KS08_15815 PF12708 Pectate lyase superfamily protein KS08_15825 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase KS08_15825 PF13457 GW (Gly-Tryp) dipeptide domain KS08_15910 PF00589 Phage integrase family KS08_16015 PF00589 Phage integrase family KS08_16015 PF02899 Phage integrase, N-terminal SAM-like domain KS08_16020 PF01521 Iron-sulphur cluster biosynthesis KS08_16025 PF01678 Diaminopimelate epimerase KS08_16030 PF07662 Na+ dependent nucleoside transporter C-terminus KS08_16030 PF01773 Na+ dependent nucleoside transporter N-terminus KS08_16035 PF07293 Protein of unknown function (DUF1450) KS08_16040 PF07992 Pyridine nucleotide-disulphide oxidoreductase KS08_16045 PF07315 Protein of unknown function (DUF1462) KS08_16050 PF01106 NifU-like domain KS08_16055 PF07676 WD40-like Beta Propeller Repeat KS08_16055 PF00326 Prolyl oligopeptidase family KS08_16060 PF00288 GHMP kinases N terminal domain KS08_16060 PF08544 GHMP kinases C terminal KS08_16065 PF00291 Pyridoxal-phosphate dependent enzyme KS08_16070 PF03447 Homoserine dehydrogenase, NAD binding domain KS08_16070 PF00742 Homoserine dehydrogenase KS08_16070 PF01842 ACT domain KS08_16080 PF04608 Phosphatidylglycerophosphatase A KS08_16085 PF13344 Haloacid dehalogenase-like hydrolase KS08_16090 PF01934 Protein of unknown function DUF86 KS08_16095 PF06265 Protein of unknown function (DUF1027) KS08_16100 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family KS08_16100 PF04055 Radical SAM superfamily KS08_16105 PF01551 Peptidase family M23 KS08_16110 PF09560 Sporulation protein YunB (Spo_YunB) KS08_16115 PF02872 5'-nucleotidase, C-terminal domain KS08_16120 PF01925 Sulfite exporter TauE/SafE KS08_16125 PF01904 Protein of unknown function DUF72 KS08_16135 PF01979 Amidohydrolase family KS08_16140 PF17853 GGDEF-like domain KS08_16140 PF07905 Purine catabolism regulatory protein-like family KS08_16140 PF13556 PucR C-terminal helix-turn-helix domain KS08_16150 PF07690 Major Facilitator Superfamily KS08_16155 PF00266 Aminotransferase class-V KS08_16160 PF01546 Peptidase family M20/M25/M40 KS08_16165 PF04231 Endonuclease I KS08_16170 PF00005 ABC transporter KS08_16170 PF03459 TOBE domain KS08_16170 PF17912 MalK OB fold domain KS08_16175 PF07702 UTRA domain KS08_16175 PF00392 Bacterial regulatory proteins, gntR family KS08_16180 PF00294 pfkB family carbohydrate kinase KS08_16185 PF00528 Binding-protein-dependent transport system inner membrane component KS08_16190 PF00528 Binding-protein-dependent transport system inner membrane component KS08_16195 PF01547 Bacterial extracellular solute-binding protein KS08_16200 PF01380 SIS domain KS08_16205 PF13411 MerR HTH family regulatory protein KS08_16220 PF17418 Sporulation delaying protein SdpA KS08_16225 PF07853 Protein of unknown function (DUF1648) KS08_16230 PF01541 GIY-YIG catalytic domain KS08_16235 PF01266 FAD dependent oxidoreductase KS08_16245 PF10903 Protein of unknown function (DUF2691) KS08_16250 PF01374 Glycosyl hydrolase family 46 KS08_16255 PF01458 Uncharacterized protein family (UPF0051) KS08_16260 PF01592 NifU-like N terminal domain KS08_16265 PF00266 Aminotransferase class-V KS08_16270 PF01458 Uncharacterized protein family (UPF0051) KS08_16275 PF00005 ABC transporter KS08_16285 PF02627 Carboxymuconolactone decarboxylase family KS08_16290 PF03180 NLPA lipoprotein KS08_16295 PF00528 Binding-protein-dependent transport system inner membrane component KS08_16300 PF09383 NIL domain KS08_16300 PF00005 ABC transporter KS08_16305 PF02036 SCP-2 sterol transfer family KS08_16310 PF00085 Thioredoxin KS08_16315 PF01751 Toprim domain KS08_16320 PF10830 Protein of unknown function (DUF2553) KS08_16325 PF01597 Glycine cleavage H-protein KS08_16330 PF03960 ArsC family KS08_16335 PF00441 Acyl-CoA dehydrogenase, C-terminal domain KS08_16335 PF02771 Acyl-CoA dehydrogenase, N-terminal domain KS08_16335 PF02770 Acyl-CoA dehydrogenase, middle domain KS08_16340 PF02803 Thiolase, C-terminal domain KS08_16340 PF00108 Thiolase, N-terminal domain KS08_16345 PF00378 Enoyl-CoA hydratase/isomerase KS08_16345 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain KS08_16345 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain KS08_16350 PF14115 YuzL-like protein KS08_16355 PF01619 Proline dehydrogenase KS08_16365 PF07875 Coat F domain KS08_16370 PF01047 MarR family KS08_16375 PF07690 Major Facilitator Superfamily KS08_16380 PF02923 Restriction endonuclease BamHI KS08_16385 PF01381 Helix-turn-helix KS08_16390 PF01555 DNA methylase KS08_16395 PF10835 Protein of unknown function (DUF2573) KS08_16400 PF00005 ABC transporter KS08_16405 PF14039 YusW-like protein KS08_16415 PF00106 short chain dehydrogenase KS08_16420 PF00210 Ferritin-like domain KS08_16425 PF13180 PDZ domain KS08_16430 PF00072 Response regulator receiver domain KS08_16430 PF00486 Transcriptional regulatory protein, C terminal KS08_16435 PF00512 His Kinase A (phospho-acceptor) domain KS08_16435 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS08_16435 PF00672 HAMP domain KS08_16445 PF00440 Bacterial regulatory proteins, tetR family KS08_16450 PF10415 Fumarase C C-terminus KS08_16450 PF00206 Lyase KS08_16455 PF13113 Protein of unknown function (DUF3970) KS08_16460 PF03323 Bacillus/Clostridium GerA spore germination protein KS08_16465 PF03845 Spore germination protein KS08_16470 PF05504 Spore germination B3/ GerAC like, C-terminal KS08_16475 PF00196 Bacterial regulatory proteins, luxR family KS08_16475 PF00072 Response regulator receiver domain KS08_16480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS08_16480 PF00672 HAMP domain KS08_16480 PF07730 Histidine kinase KS08_16485 PF09922 Cell wall-active antibiotics response 4TMS YvqF KS08_16490 PF13349 Putative adhesin KS08_16495 PF04012 PspA/IM30 family KS08_16505 PF07690 Major Facilitator Superfamily KS08_16510 PF01923 Cobalamin adenosyltransferase KS08_16515 PF00005 ABC transporter KS08_16520 PF01032 FecCD transport family KS08_16525 PF01497 Periplasmic binding protein KS08_16530 PF00106 short chain dehydrogenase KS08_16535 PF08450 SMP-30/Gluconolactonase/LRE-like region KS08_16540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS08_16540 PF00512 His Kinase A (phospho-acceptor) domain KS08_16545 PF00072 Response regulator receiver domain KS08_16545 PF00486 Transcriptional regulatory protein, C terminal KS08_16555 PF04545 Sigma-70, region 4 KS08_16560 PF12841 YvrJ protein family KS08_16565 PF00190 Cupin KS08_16570 PF14184 Regulatory protein YrvL KS08_16575 PF00005 ABC transporter KS08_16580 PF01032 FecCD transport family KS08_16585 PF01032 FecCD transport family KS08_16590 PF01497 Periplasmic binding protein KS08_16595 PF04072 Leucine carboxyl methyltransferase KS08_16600 PF13520 Amino acid permease KS08_16605 PF09575 Small spore protein J (Spore_SspJ) KS08_16610 PF04307 LexA-binding, inner membrane-associated putative hydrolase KS08_16615 PF00884 Sulfatase KS08_16620 PF12727 PBP superfamily domain KS08_16620 PF12728 Helix-turn-helix domain KS08_16630 PF00528 Binding-protein-dependent transport system inner membrane component KS08_16635 PF00196 Bacterial regulatory proteins, luxR family KS08_16635 PF00072 Response regulator receiver domain KS08_16645 PF00005 ABC transporter KS08_16660 PF00248 Aldo/keto reductase family KS08_16670 PF00999 Sodium/hydrogen exchanger family KS08_16675 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain KS08_16675 PF01077 Nitrite and sulphite reductase 4Fe-4S domain KS08_16680 PF00258 Flavodoxin KS08_16680 PF00175 Oxidoreductase NAD-binding domain KS08_16680 PF00667 FAD binding domain KS08_16685 PF13538 UvrD-like helicase C-terminal domain KS08_16690 PF03458 UPF0126 domain KS08_16700 PF02600 Disulfide bond formation protein DsbB KS08_16705 PF13462 Thioredoxin KS08_16710 PF00403 Heavy-metal-associated domain KS08_16715 PF00403 Heavy-metal-associated domain KS08_16720 PF00403 Heavy-metal-associated domain KS08_16725 PF02583 Metal-sensitive transcriptional repressor KS08_16730 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KS08_16730 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KS08_16735 PF02525 Flavodoxin-like fold KS08_16740 PF00296 Luciferase-like monooxygenase KS08_16745 PF00462 Glutaredoxin KS08_16750 PF00296 Luciferase-like monooxygenase KS08_16755 PF00005 ABC transporter KS08_16760 PF00528 Binding-protein-dependent transport system inner membrane component KS08_16765 PF00528 Binding-protein-dependent transport system inner membrane component KS08_16770 PF00497 Bacterial extracellular solute-binding proteins, family 3 KS08_16775 PF00497 Bacterial extracellular solute-binding proteins, family 3 KS08_16780 PF00583 Acetyltransferase (GNAT) family KS08_16785 PF03466 LysR substrate binding domain KS08_16785 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KS08_16790 PF00106 short chain dehydrogenase KS08_16795 PF01337 Barstar (barnase inhibitor) KS08_16800 PF01668 SmpB protein KS08_16805 PF00575 S1 RNA binding domain KS08_16805 PF00773 RNB domain KS08_16805 PF17876 Cold shock domain KS08_16805 PF08206 Ribonuclease B OB domain KS08_16810 PF12146 Serine aminopeptidase, S33 KS08_16815 PF03840 Preprotein translocase SecG subunit KS08_16820 PF01381 Helix-turn-helix KS08_16835 PF01638 HxlR-like helix-turn-helix KS08_16840 PF00512 His Kinase A (phospho-acceptor) domain KS08_16840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS08_16845 PF00486 Transcriptional regulatory protein, C terminal KS08_16845 PF00072 Response regulator receiver domain KS08_16860 PF00005 ABC transporter KS08_16865 PF00528 Binding-protein-dependent transport system inner membrane component KS08_16870 PF04069 Substrate binding domain of ABC-type glycine betaine transport system KS08_16875 PF00528 Binding-protein-dependent transport system inner membrane component KS08_16880 PF00571 CBS domain KS08_16880 PF00005 ABC transporter KS08_16885 PF12802 MarR family KS08_16890 PF00528 Binding-protein-dependent transport system inner membrane component KS08_16895 PF04069 Substrate binding domain of ABC-type glycine betaine transport system KS08_16900 PF00528 Binding-protein-dependent transport system inner membrane component KS08_16905 PF00571 CBS domain KS08_16905 PF00005 ABC transporter KS08_16910 PF12802 MarR family KS08_16915 PF01914 MarC family integral membrane protein KS08_16930 PF00583 Acetyltransferase (GNAT) family KS08_16945 PF02585 GlcNAc-PI de-N-acetylase KS08_16960 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KS08_16965 PF01370 NAD dependent epimerase/dehydratase family KS08_16970 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KS08_16975 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KS08_16975 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KS08_16975 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KS08_16980 PF04389 Peptidase family M28 KS08_16980 PF02225 PA domain KS08_16985 PF00113 Enolase, C-terminal TIM barrel domain KS08_16985 PF03952 Enolase, N-terminal domain KS08_16990 PF01676 Metalloenzyme superfamily KS08_16990 PF06415 BPG-independent PGAM N-terminus (iPGM_N) KS08_16995 PF00121 Triosephosphate isomerase KS08_17000 PF00162 Phosphoglycerate kinase KS08_17010 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KS08_17010 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain KS08_17015 PF04198 Putative sugar-binding domain KS08_17020 PF00083 Sugar (and other) transporter KS08_17025 PF00392 Bacterial regulatory proteins, gntR family KS08_17030 PF00296 Luciferase-like monooxygenase KS08_17035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KS08_17035 PF03466 LysR substrate binding domain KS08_17040 PF00892 EamA-like transporter family KS08_17045 PF00324 Amino acid permease KS08_17050 PF01380 SIS domain KS08_17050 PF01418 Helix-turn-helix domain, rpiR family KS08_17055 PF02782 FGGY family of carbohydrate kinases, C-terminal domain KS08_17055 PF00370 FGGY family of carbohydrate kinases, N-terminal domain KS08_17060 PF02447 GntP family permease KS08_17065 PF02589 LUD domain KS08_17070 PF13183 4Fe-4S dicluster domain KS08_17070 PF02589 LUD domain KS08_17070 PF11870 Domain of unknown function (DUF3390) KS08_17075 PF02754 Cysteine-rich domain KS08_17080 PF00155 Aminotransferase class I and II KS08_17080 PF00392 Bacterial regulatory proteins, gntR family KS08_17085 PF00392 Bacterial regulatory proteins, gntR family KS08_17085 PF07729 FCD domain KS08_17090 PF02652 L-lactate permease KS08_17095 PF00309 Sigma-54 factor, Activator interacting domain (AID) KS08_17095 PF04963 Sigma-54 factor, core binding domain KS08_17095 PF04552 Sigma-54, DNA binding domain KS08_17100 PF09628 YvfG protein KS08_17105 PF04230 Polysaccharide pyruvyl transferase KS08_17110 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KS08_17115 PF00132 Bacterial transferase hexapeptide (six repeats) KS08_17115 PF17836 PglD N-terminal domain KS08_17120 PF02397 Bacterial sugar transferase KS08_17125 PF14667 Polysaccharide biosynthesis C-terminal domain KS08_17125 PF01943 Polysaccharide biosynthesis protein KS08_17130 PF00535 Glycosyl transferase family 2 KS08_17135 PF04230 Polysaccharide pyruvyl transferase KS08_17140 PF00535 Glycosyl transferase family 2 KS08_17150 PF00534 Glycosyl transferases group 1 KS08_17150 PF13439 Glycosyltransferase Family 4 KS08_17155 PF00535 Glycosyl transferase family 2 KS08_17160 PF00534 Glycosyl transferases group 1 KS08_17160 PF13439 Glycosyltransferase Family 4 KS08_17165 PF02719 Polysaccharide biosynthesis protein KS08_17170 PF13614 AAA domain KS08_17175 PF02706 Chain length determinant protein KS08_17180 PF08671 Anti-repressor SinI KS08_17180 PF01381 Helix-turn-helix KS08_17185 PF00135 Carboxylesterase family KS08_17195 PF01872 RibD C-terminal domain KS08_17200 PF01494 FAD binding domain KS08_17215 PF00583 Acetyltransferase (GNAT) family KS08_17220 PF05870 Phenolic acid decarboxylase (PAD) KS08_17260 PF00251 Glycosyl hydrolases family 32 N-terminal domain KS08_17260 PF08244 Glycosyl hydrolases family 32 C terminal KS08_17265 PF01306 LacY proton/sugar symporter KS08_17270 PF00356 Bacterial regulatory proteins, lacI family KS08_17275 PF00574 Clp protease KS08_17280 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KS08_17280 PF03466 LysR substrate binding domain KS08_17285 PF04303 PrpF protein KS08_17290 PF00083 Sugar (and other) transporter KS08_17300 PF03641 Possible lysine decarboxylase KS08_17305 PF03819 MazG nucleotide pyrophosphohydrolase domain KS08_17310 PF00916 Sulfate permease family KS08_17310 PF01740 STAS domain KS08_17315 PF00484 Carbonic anhydrase KS08_17325 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain KS08_17325 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain KS08_17330 PF00545 ribonuclease KS08_17335 PF00797 N-acetyltransferase KS08_17340 PF00381 PTS HPr component phosphorylation site KS08_17345 PF14527 WhiA LAGLIDADG-like domain KS08_17345 PF02650 WhiA C-terminal HTH domain KS08_17345 PF10298 WhiA N-terminal LAGLIDADG-like domain KS08_17350 PF01933 Uncharacterised protein family UPF0052 KS08_17355 PF03668 P-loop ATPase protein family KS08_17360 PF00293 NUDIX domain KS08_17365 PF07992 Pyridine nucleotide-disulphide oxidoreductase KS08_17370 PF00877 NlpC/P60 family KS08_17380 PF00512 His Kinase A (phospho-acceptor) domain KS08_17380 PF00989 PAS fold KS08_17380 PF00672 HAMP domain KS08_17380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS08_17380 PF18698 Histidine kinase sensor domain KS08_17385 PF00486 Transcriptional regulatory protein, C terminal KS08_17385 PF00072 Response regulator receiver domain KS08_17390 PF00005 ABC transporter KS08_17390 PF00664 ABC transporter transmembrane region KS08_17395 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase KS08_17395 PF01502 Phosphoribosyl-AMP cyclohydrolase KS08_17400 PF00977 Histidine biosynthesis protein KS08_17405 PF00977 Histidine biosynthesis protein KS08_17410 PF00117 Glutamine amidotransferase class-I KS08_17415 PF00475 Imidazoleglycerol-phosphate dehydratase KS08_17420 PF00815 Histidinol dehydrogenase KS08_17425 PF01634 ATP phosphoribosyltransferase KS08_17430 PF13393 Histidyl-tRNA synthetase KS08_17435 PF13529 Peptidase_C39 like family KS08_17440 PF14602 Hexapeptide repeat of succinyl-transferase KS08_17445 PF13419 Haloacid dehalogenase-like hydrolase KS08_17450 PF01790 Prolipoprotein diacylglyceryl transferase KS08_17455 PF07475 HPr Serine kinase C-terminal domain KS08_17455 PF02603 HPr Serine kinase N terminus KS08_17460 PF01979 Amidohydrolase family KS08_17465 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase KS08_17475 PF00440 Bacterial regulatory proteins, tetR family KS08_17480 PF00149 Calcineurin-like phosphoesterase KS08_17485 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV KS08_17490 PF04024 PspC domain KS08_17495 PF13349 Putative adhesin KS08_17510 PF17760 UvrA interaction domain KS08_17510 PF00005 ABC transporter KS08_17510 PF17755 UvrA DNA-binding domain KS08_17515 PF02151 UvrB/uvrC motif KS08_17515 PF17757 UvrB interaction domain KS08_17515 PF04851 Type III restriction enzyme, res subunit KS08_17515 PF00271 Helicase conserved C-terminal domain KS08_17515 PF12344 Ultra-violet resistance protein B KS08_17520 PF09964 Uncharacterized protein conserved in bacteria (DUF2198) KS08_17525 PF00391 PEP-utilising enzyme, mobile domain KS08_17525 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain KS08_17530 PF00440 Bacterial regulatory proteins, tetR family KS08_17535 PF07690 Major Facilitator Superfamily KS08_17540 PF17735 Biofilm surface layer A KS08_17550 PF17820 PDZ domain KS08_17555 PF17423 Swarming motility protein KS08_17560 PF01471 Putative peptidoglycan binding domain KS08_17560 PF17820 PDZ domain KS08_17560 PF03572 Peptidase family S41 KS08_17565 PF13229 Right handed beta helix region KS08_17570 PF18075 FtsX extracellular domain KS08_17570 PF02687 FtsX-like permease family KS08_17575 PF00005 ABC transporter KS08_17580 PF13442 Cytochrome C oxidase, cbb3-type, subunit III KS08_17585 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KS08_17585 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KS08_17590 PF03462 PCRF domain KS08_17590 PF00472 RF-1 domain KS08_17595 PF07516 SecA Wing and Scaffold domain KS08_17595 PF07517 SecA DEAD-like domain KS08_17595 PF01043 SecA preprotein cross-linking domain KS08_17595 PF02810 SEC-C motif KS08_17600 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus KS08_17600 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein KS08_17615 PF02561 Flagellar protein FliS KS08_17620 PF02465 Flagellar hook-associated protein 2 N-terminus KS08_17620 PF07195 Flagellar hook-associated protein 2 C-terminus KS08_17620 PF07196 Flagellin hook IN motif KS08_17625 PF00700 Bacterial flagellin C-terminal helical region KS08_17625 PF00669 Bacterial flagellin N-terminal helical region KS08_17630 PF02599 Global regulator protein family KS08_17635 PF02623 FliW protein KS08_17645 PF00669 Bacterial flagellin N-terminal helical region KS08_17645 PF00700 Bacterial flagellin C-terminal helical region KS08_17650 PF00460 Flagella basal body rod protein KS08_17650 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KS08_17655 PF05130 FlgN protein KS08_17660 PF04316 Anti-sigma-28 factor, FlgM KS08_17675 PF10719 Late competence development protein ComFB KS08_17680 PF04851 Type III restriction enzyme, res subunit KS08_17680 PF00271 Helicase conserved C-terminal domain KS08_17685 PF02645 Uncharacterised protein, DegV family COG1307 KS08_17690 PF00072 Response regulator receiver domain KS08_17690 PF00196 Bacterial regulatory proteins, luxR family KS08_17695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS08_17695 PF05384 Sensor protein DegS KS08_17695 PF07730 Histidine kinase KS08_17700 PF09186 Domain of unknown function (DUF1949) KS08_17700 PF01205 Uncharacterized protein family UPF0029 KS08_17705 PF03816 Cell envelope-related transcriptional attenuator domain KS08_17710 PF00953 Glycosyl transferase family 4 KS08_17720 PF00535 Glycosyl transferase family 2 KS08_17725 PF02706 Chain length determinant protein KS08_17730 PF04932 O-Antigen ligase KS08_17735 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KS08_17735 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KS08_17735 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KS08_17740 PF00534 Glycosyl transferases group 1 KS08_17740 PF13439 Glycosyltransferase Family 4 KS08_17745 PF01943 Polysaccharide biosynthesis protein KS08_17745 PF14667 Polysaccharide biosynthesis C-terminal domain KS08_17750 PF02397 Bacterial sugar transferase KS08_17755 PF01520 N-acetylmuramoyl-L-alanine amidase KS08_17755 PF04122 Putative cell wall binding repeat 2 KS08_17760 PF08486 Stage II sporulation protein KS08_17760 PF04122 Putative cell wall binding repeat 2 KS08_17770 PF03816 Cell envelope-related transcriptional attenuator domain KS08_17775 PF02350 UDP-N-acetylglucosamine 2-epimerase KS08_17780 PF00483 Nucleotidyl transferase KS08_17785 PF00005 ABC transporter KS08_17790 PF01061 ABC-2 type transporter KS08_17795 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase KS08_17800 PF00534 Glycosyl transferases group 1 KS08_17800 PF09318 Glycosyl transferase 1 domain A KS08_17805 PF01467 Cytidylyltransferase-like KS08_17810 PF03808 Glycosyl transferase WecB/TagA/CpsF family KS08_17815 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase KS08_17820 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase KS08_17820 PF08239 Bacterial SH3 domain KS08_17820 PF05036 Sporulation related domain KS08_17825 PF01238 Phosphomannose isomerase type I KS08_17830 PF03323 Bacillus/Clostridium GerA spore germination protein KS08_17835 PF03845 Spore germination protein KS08_17840 PF05504 Spore germination B3/ GerAC like, C-terminal KS08_17845 PF00535 Glycosyl transferase family 2 KS08_17850 PF00083 Sugar (and other) transporter KS08_17855 PF03816 Cell envelope-related transcriptional attenuator domain KS08_17865 PF04791 LMBR1-like membrane protein KS08_17870 PF00877 NlpC/P60 family KS08_17880 PF09587 Bacterial capsule synthesis protein PGA_cap KS08_17885 PF14102 Capsule biosynthesis CapC KS08_17890 PF08245 Mur ligase middle domain KS08_17895 PF03323 Bacillus/Clostridium GerA spore germination protein KS08_17900 PF03845 Spore germination protein KS08_17910 PF00356 Bacterial regulatory proteins, lacI family KS08_17915 PF00294 pfkB family carbohydrate kinase KS08_17920 PF05025 RbsD / FucU transport protein family KS08_17925 PF00005 ABC transporter KS08_17930 PF02653 Branched-chain amino acid transport system / permease component KS08_17935 PF13407 Periplasmic binding protein domain KS08_17940 PF08239 Bacterial SH3 domain KS08_17945 PF02525 Flavodoxin-like fold KS08_17950 PF03306 Alpha-acetolactate decarboxylase KS08_17955 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KS08_17955 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KS08_17955 PF00205 Thiamine pyrophosphate enzyme, central domain KS08_17960 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KS08_17960 PF03466 LysR substrate binding domain KS08_17965 PF02040 Arsenical pump membrane protein KS08_17980 PF08757 CotH kinase protein KS08_17990 PF01613 Flavin reductase like domain KS08_18005 PF13404 AsnC-type helix-turn-helix domain KS08_18005 PF01037 Lrp/AsnC ligand binding domain KS08_18010 PF02417 Chromate transporter KS08_18015 PF02417 Chromate transporter KS08_18045 PF14431 YwqJ-like deaminase KS08_18045 PF14449 Pre-toxin TG KS08_18045 PF04740 LXG domain of WXG superfamily KS08_18055 PF16888 Domain of unknown function (DUF5082) KS08_18060 PF09234 Domain of unknown function (DUF1963) KS08_18065 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain KS08_18065 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain KS08_18065 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain KS08_18075 PF13614 AAA domain KS08_18080 PF02706 Chain length determinant protein KS08_18080 PF13807 G-rich domain on putative tyrosine kinase KS08_18090 PF04434 SWIM zinc finger KS08_18095 PF12419 SNF2 Helicase protein KS08_18095 PF00271 Helicase conserved C-terminal domain KS08_18095 PF00176 SNF2 family N-terminal domain KS08_18105 PF00455 DeoR C terminal sensor domain KS08_18105 PF08220 DeoR-like helix-turn-helix domain KS08_18110 PF00436 Single-strand binding protein family KS08_18120 PF14183 YwpF-like protein KS08_18125 PF01741 Large-conductance mechanosensitive channel, MscL KS08_18130 PF07977 FabA-like domain KS08_18135 PF18801 response regulator aspartate phosphatase H, N terminal KS08_18140 PF00460 Flagella basal body rod protein KS08_18140 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KS08_18145 PF06429 Flagellar basal body rod FlgEFG protein C-terminal KS08_18145 PF00460 Flagella basal body rod protein KS08_18155 PF12116 Stage III sporulation protein D KS08_18160 PF01047 MarR family KS08_18165 PF07690 Major Facilitator Superfamily KS08_18170 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin KS08_18180 PF00857 Isochorismatase family KS08_18185 PF00909 Ammonium Transporter Family KS08_18190 PF00543 Nitrogen regulatory protein P-II KS08_18195 PF01098 Cell cycle protein KS08_18200 PF01569 PAP2 superfamily KS08_18205 PF04892 VanZ like family KS08_18210 PF01551 Peptidase family M23 KS08_18215 PF00583 Acetyltransferase (GNAT) family KS08_18220 PF17319 Family of unknown function (DUF5362) KS08_18225 PF17370 Family of unknown function (DUF5392) KS08_18230 PF13091 PLD-like domain KS08_18230 PF13396 Phospholipase_D-nuclease N-terminal KS08_18240 PF17319 Family of unknown function (DUF5362) KS08_18245 PF13460 NAD(P)H-binding KS08_18250 PF02082 Transcriptional regulator KS08_18255 PF00449 Urease alpha-subunit, N-terminal domain KS08_18255 PF01979 Amidohydrolase family KS08_18260 PF00699 Urease beta subunit KS08_18265 PF00547 Urease, gamma subunit KS08_18270 PF05532 CsbD-like KS08_18280 PF17874 MalT-like TPR region KS08_18280 PF18801 response regulator aspartate phosphatase H, N terminal KS08_18285 PF06463 Molybdenum Cofactor Synthesis C KS08_18285 PF04055 Radical SAM superfamily KS08_18290 PF02634 FdhD/NarQ family KS08_18300 PF00092 von Willebrand factor type A domain KS08_18305 PF00092 von Willebrand factor type A domain KS08_18310 PF08486 Stage II sporulation protein KS08_18315 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KS08_18320 PF08680 TATA-box binding KS08_18325 PF06612 Protein of unknown function (DUF1146) KS08_18335 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain KS08_18335 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain KS08_18340 PF02874 ATP synthase alpha/beta family, beta-barrel domain KS08_18340 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KS08_18345 PF00231 ATP synthase KS08_18350 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KS08_18350 PF00306 ATP synthase alpha/beta chain, C terminal domain KS08_18350 PF02874 ATP synthase alpha/beta family, beta-barrel domain KS08_18355 PF00213 ATP synthase delta (OSCP) subunit KS08_18360 PF00430 ATP synthase B/B' CF(0) KS08_18365 PF00137 ATP synthase subunit C KS08_18370 PF00119 ATP synthase A chain KS08_18375 PF03899 ATP synthase I chain KS08_18385 PF00464 Serine hydroxymethyltransferase KS08_18390 PF04260 Protein of unknown function (DUF436) KS08_18395 PF02502 Ribose/Galactose Isomerase KS08_18400 PF01451 Low molecular weight phosphotyrosine protein phosphatase KS08_18405 PF02659 Putative manganese efflux pump KS08_18410 PF01300 Telomere recombination KS08_18410 PF03481 Putative GTP-binding controlling metal-binding KS08_18420 PF09551 Stage II sporulation protein R (spore_II_R) KS08_18425 PF17094 Uncharacterised protein family (UPF0715) KS08_18430 PF17247 Family of unknown function (DUF5316) KS08_18435 PF17827 PrmC N-terminal domain KS08_18435 PF05175 Methyltransferase small domain KS08_18440 PF00472 RF-1 domain KS08_18440 PF03462 PCRF domain KS08_18445 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KS08_18450 PF13411 MerR HTH family regulatory protein KS08_18455 PF03547 Membrane transport protein KS08_18460 PF00390 Malic enzyme, N-terminal domain KS08_18460 PF03949 Malic enzyme, NAD binding domain KS08_18465 PF00265 Thymidine kinase KS08_18470 PF01197 Ribosomal protein L31 KS08_18475 PF07498 Rho termination factor, N-terminal domain KS08_18475 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain KS08_18475 PF07497 Rho termination factor, RNA-binding domain KS08_18480 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded KS08_18485 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) KS08_18490 PF00923 Transaldolase/Fructose-6-phosphate aldolase KS08_18495 PF01116 Fructose-bisphosphate aldolase class-II KS08_18500 PF00072 Response regulator receiver domain KS08_18505 PF10740 Domain of unknown function (DUF2529) KS08_18510 PF00117 Glutamine amidotransferase class-I KS08_18510 PF06418 CTP synthase N-terminus KS08_18515 PF05066 HB1, ASXL, restriction endonuclease HTH domain KS08_18520 PF13183 4Fe-4S dicluster domain KS08_18520 PF02754 Cysteine-rich domain KS08_18525 PF13091 PLD-like domain KS08_18530 PF03851 UV-endonuclease UvdE KS08_18540 PF00664 ABC transporter transmembrane region KS08_18540 PF00005 ABC transporter KS08_18545 PF13396 Phospholipase_D-nuclease N-terminal KS08_18545 PF13091 PLD-like domain KS08_18550 PF02665 Nitrate reductase gamma subunit KS08_18555 PF02613 Nitrate reductase delta subunit KS08_18560 PF13247 4Fe-4S dicluster domain KS08_18560 PF14711 Respiratory nitrate reductase beta C-terminal KS08_18565 PF00384 Molybdopterin oxidoreductase KS08_18565 PF01568 Molydopterin dinucleotide binding domain KS08_18565 PF14710 Respiratory nitrate reductase alpha N-terminal KS08_18575 PF14256 YwiC-like protein KS08_18580 PF00027 Cyclic nucleotide-binding domain KS08_18580 PF00325 Bacterial regulatory proteins, crp family KS08_18585 PF07690 Major Facilitator Superfamily KS08_18590 PF00750 tRNA synthetases class I (R) KS08_18590 PF05746 DALR anticodon binding domain KS08_18590 PF03485 Arginyl tRNA synthetase N terminal domain KS08_18595 PF09148 Domain of unknown function (DUF1934) KS08_18615 PF18801 response regulator aspartate phosphatase H, N terminal KS08_18620 PF11131 Rap-phr extracellular signalling KS08_18625 PF00491 Arginase family KS08_18630 PF17284 Spermidine synthase tetramerisation domain KS08_18635 PF00905 Penicillin binding protein transpeptidase domain KS08_18635 PF00912 Transglycosylase KS08_18645 PF08741 YwhD family KS08_18650 PF02163 Peptidase family M50 KS08_18655 PF01361 Tautomerase enzyme KS08_18660 PF01047 MarR family KS08_18665 PF13520 Amino acid permease KS08_18675 PF01966 HD domain KS08_18680 PF07293 Protein of unknown function (DUF1450) KS08_18690 PF03551 Transcriptional regulator PadR-like family KS08_18705 PF12679 ABC-2 family transporter protein KS08_18730 PF03099 Biotin/lipoate A/B protein ligase family KS08_18735 PF03466 LysR substrate binding domain KS08_18735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KS08_18740 PF03601 Conserved hypothetical protein 698 KS08_18745 PF01515 Phosphate acetyl/butaryl transferase KS08_18760 PF00155 Aminotransferase class I and II KS08_18765 PF07690 Major Facilitator Superfamily KS08_18780 PF07883 Cupin domain KS08_18790 PF07690 Major Facilitator Superfamily KS08_18795 PF07690 Major Facilitator Superfamily KS08_18800 PF00324 Amino acid permease KS08_18805 PF01546 Peptidase family M20/M25/M40 KS08_18810 PF00171 Aldehyde dehydrogenase family KS08_18815 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KS08_18815 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain KS08_18820 PF17735 Biofilm surface layer A KS08_18825 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase KS08_18830 PF04321 RmlD substrate binding domain KS08_18835 PF16363 GDP-mannose 4,6 dehydratase KS08_18840 PF00483 Nucleotidyl transferase KS08_18845 PF04101 Glycosyltransferase family 28 C-terminal domain KS08_18850 PF02348 Cytidylyltransferase KS08_18855 PF08666 SAF domain KS08_18855 PF03102 NeuB family KS08_18860 PF00583 Acetyltransferase (GNAT) family KS08_18865 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family KS08_18870 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase KS08_18875 PF00535 Glycosyl transferase family 2 KS08_18880 PF09671 Spore coat protein (Spore_GerQ) KS08_18885 PF04241 Protein of unknown function (DUF423) KS08_18890 PF00860 Permease family KS08_18895 PF17261 Family of unknown function (DUF5327) KS08_18900 PF03167 Uracil DNA glycosylase superfamily KS08_18905 PF00535 Glycosyl transferase family 2 KS08_18915 PF08543 Phosphomethylpyrimidine kinase KS08_18925 PF00251 Glycosyl hydrolases family 32 N-terminal domain KS08_18925 PF08244 Glycosyl hydrolases family 32 C terminal KS08_18930 PF00367 phosphotransferase system, EIIB KS08_18930 PF02378 Phosphotransferase system, EIIC KS08_18935 PF00874 PRD domain KS08_18935 PF03123 CAT RNA binding domain KS08_18945 PF13860 FlgD Ig-like domain KS08_18945 PF00082 Subtilase family KS08_18945 PF02225 PA domain KS08_18945 PF05922 Peptidase inhibitor I9 KS08_18950 PF00296 Luciferase-like monooxygenase KS08_18955 PF08279 HTH domain KS08_18955 PF13280 WYL domain KS08_18975 PF00881 Nitroreductase family KS08_18980 PF01098 Cell cycle protein KS08_18985 PF00583 Acetyltransferase (GNAT) family KS08_18990 PF17368 Spore morphogenesis and germination YwcE KS08_18995 PF03626 Prokaryotic Cytochrome C oxidase subunit IV KS08_19000 PF00510 Cytochrome c oxidase subunit III KS08_19005 PF00115 Cytochrome C and Quinol oxidase polypeptide I KS08_19010 PF00116 Cytochrome C oxidase subunit II, periplasmic domain KS08_19010 PF02790 Cytochrome C oxidase subunit II, transmembrane domain KS08_19015 PF04226 Transglycosylase associated protein KS08_19020 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain KS08_19020 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain KS08_19025 PF10509 Galactokinase galactose-binding signature KS08_19025 PF08544 GHMP kinases C terminal KS08_19025 PF00288 GHMP kinases N terminal domain KS08_19030 PF04138 GtrA-like protein KS08_19035 PF00440 Bacterial regulatory proteins, tetR family KS08_19040 PF08671 Anti-repressor SinI KS08_19055 PF01323 DSBA-like thioredoxin domain KS08_19060 PF10518 TAT (twin-arginine translocation) pathway signal sequence KS08_19060 PF04261 Dyp-type peroxidase family KS08_19065 PF09375 Imelysin KS08_19070 PF03239 Iron permease FTR1 family KS08_19075 PF02581 Thiamine monophosphate synthase KS08_19080 PF02110 Hydroxyethylthiazole kinase family KS08_19085 PF03466 LysR substrate binding domain KS08_19085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family KS08_19090 PF03788 LrgA family KS08_19095 PF04172 LrgB-like family KS08_19100 PF09962 Uncharacterized conserved protein (DUF2196) KS08_19105 PF07739 TipAS antibiotic-recognition domain KS08_19105 PF13411 MerR HTH family regulatory protein KS08_19110 PF10026 Predicted Zn-dependent protease (DUF2268) KS08_19115 PF17785 PUA-like domain KS08_19115 PF10672 S-adenosylmethionine-dependent methyltransferase KS08_19120 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KS08_19125 PF02378 Phosphotransferase system, EIIC KS08_19130 PF00082 Subtilase family KS08_19135 PF01501 Glycosyl transferase family 8 KS08_19140 PF04607 Region found in RelA / SpoT proteins KS08_19145 PF01040 UbiA prenyltransferase family KS08_19160 PF00544 Pectate lyase KS08_19165 PF00892 EamA-like transporter family KS08_19170 PF00582 Universal stress protein family KS08_19175 PF00232 Glycosyl hydrolase family 1 KS08_19180 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 KS08_19180 PF00367 phosphotransferase system, EIIB KS08_19180 PF02378 Phosphotransferase system, EIIC KS08_19190 PF00145 C-5 cytosine-specific DNA methylase KS08_19195 PF08676 MutL C terminal dimerisation domain KS08_19195 PF01119 DNA mismatch repair protein, C-terminal domain KS08_19220 PF16369 C-terminal lipocalin-like domain KS08_19220 PF04616 Glycosyl hydrolases family 43 KS08_19225 PF09021 HutP KS08_19230 PF00221 Aromatic amino acid lyase KS08_19235 PF17391 Urocanase N-terminal domain KS08_19235 PF01175 Urocanase Rossmann-like domain KS08_19235 PF17392 Urocanase C-terminal domain KS08_19240 PF01979 Amidohydrolase family KS08_19245 PF00491 Arginase family KS08_19250 PF00324 Amino acid permease KS08_19255 PF02885 Glycosyl transferase family, helical bundle domain KS08_19255 PF00591 Glycosyl transferase family, a/b domain KS08_19255 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain KS08_19260 PF07662 Na+ dependent nucleoside transporter C-terminus KS08_19260 PF01773 Na+ dependent nucleoside transporter N-terminus KS08_19265 PF01791 DeoC/LacD family aldolase KS08_19285 PF11631 Protein of unknown function (DUF3255) KS08_19305 PF01497 Periplasmic binding protein KS08_19310 PF06486 Protein of unknown function (DUF1093) KS08_19315 PF02687 FtsX-like permease family KS08_19320 PF00005 ABC transporter KS08_19325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS08_19330 PF00486 Transcriptional regulatory protein, C terminal KS08_19330 PF00072 Response regulator receiver domain KS08_19335 PF01116 Fructose-bisphosphate aldolase class-II KS08_19340 PF01261 Xylose isomerase-like TIM barrel KS08_19345 PF01261 Xylose isomerase-like TIM barrel KS08_19350 PF02894 Oxidoreductase family, C-terminal alpha/beta domain KS08_19350 PF01408 Oxidoreductase family, NAD-binding Rossmann fold KS08_19355 PF07690 Major Facilitator Superfamily KS08_19360 PF01261 Xylose isomerase-like TIM barrel KS08_19365 PF00205 Thiamine pyrophosphate enzyme, central domain KS08_19365 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain KS08_19365 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain KS08_19370 PF00294 pfkB family carbohydrate kinase KS08_19375 PF04962 KduI/IolB family KS08_19380 PF00171 Aldehyde dehydrogenase family KS08_19385 PF00455 DeoR C terminal sensor domain KS08_19385 PF08220 DeoR-like helix-turn-helix domain KS08_19390 PF00248 Aldo/keto reductase family KS08_19395 PF00083 Sugar (and other) transporter KS08_19400 PF00183 Hsp90 protein KS08_19400 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS08_19410 PF00072 Response regulator receiver domain KS08_19410 PF00196 Bacterial regulatory proteins, luxR family KS08_19415 PF07730 Histidine kinase KS08_19420 PF00487 Fatty acid desaturase KS08_19425 PF00440 Bacterial regulatory proteins, tetR family KS08_19430 PF00171 Aldehyde dehydrogenase family KS08_19435 PF01011 PQQ enzyme repeat KS08_19435 PF13360 PQQ-like domain KS08_19435 PF13570 PQQ-like domain KS08_19450 PF07690 Major Facilitator Superfamily KS08_19455 PF06271 RDD family KS08_19465 PF00578 AhpC/TSA family KS08_19470 PF13192 Thioredoxin domain KS08_19470 PF07992 Pyridine nucleotide-disulphide oxidoreductase KS08_19480 PF00324 Amino acid permease KS08_19505 PF06874 Firmicute fructose-1,6-bisphosphatase KS08_19510 PF00111 2Fe-2S iron-sulfur cluster binding domain KS08_19510 PF01799 [2Fe-2S] binding domain KS08_19520 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain KS08_19520 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase KS08_19525 PF12804 MobA-like NTP transferase domain KS08_19530 PF02625 XdhC and CoxI family KS08_19530 PF13478 XdhC Rossmann domain KS08_19560 PF02590 Predicted SPOUT methyltransferase KS08_19580 PF00248 Aldo/keto reductase family KS08_19585 PF00583 Acetyltransferase (GNAT) family KS08_19590 PF18801 response regulator aspartate phosphatase H, N terminal KS08_19595 PF00491 Arginase family KS08_19600 PF00324 Amino acid permease KS08_19605 PF00202 Aminotransferase class-III KS08_19610 PF07853 Protein of unknown function (DUF1648) KS08_19610 PF13630 SdpI/YhfL protein family KS08_19615 PF01022 Bacterial regulatory protein, arsR family KS08_19620 PF13426 PAS domain KS08_19620 PF02954 Bacterial regulatory protein, Fis family KS08_19620 PF00158 Sigma-54 interaction domain KS08_19635 PF00672 HAMP domain KS08_19635 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS08_19635 PF00512 His Kinase A (phospho-acceptor) domain KS08_19640 PF00486 Transcriptional regulatory protein, C terminal KS08_19640 PF00072 Response regulator receiver domain KS08_19650 PF13180 PDZ domain KS08_19655 PF00753 Metallo-beta-lactamase superfamily KS08_19660 PF09648 YycH protein KS08_19665 PF07435 YycH protein KS08_19670 PF00512 His Kinase A (phospho-acceptor) domain KS08_19670 PF00672 HAMP domain KS08_19670 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase KS08_19670 PF13426 PAS domain KS08_19675 PF00072 Response regulator receiver domain KS08_19675 PF00486 Transcriptional regulatory protein, C terminal KS08_19710 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KS08_19715 PF00772 DnaB-like helicase N terminal domain KS08_19715 PF03796 DnaB-like helicase C terminal domain KS08_19725 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) KS08_19735 PF14174 YycC-like protein KS08_19755 PF13477 Glycosyl transferase 4-like KS08_19755 PF00534 Glycosyl transferases group 1 KS08_19770 PF03948 Ribosomal protein L9, C-terminal domain KS08_19770 PF01281 Ribosomal protein L9, N-terminal domain KS08_19775 PF02272 DHHA1 domain KS08_19775 PF01368 DHH family KS08_19780 PF09991 Predicted membrane protein (DUF2232) KS08_19790 PF07875 Coat F domain KS08_19795 PF01638 HxlR-like helix-turn-helix KS08_19800 PF02833 DHHA2 domain KS08_19800 PF01368 DHH family KS08_19805 PF00892 EamA-like transporter family KS08_19810 PF02435 Levansucrase/Invertase KS08_19815 PF08244 Glycosyl hydrolases family 32 C terminal KS08_19815 PF00251 Glycosyl hydrolases family 32 N-terminal domain KS08_19820 PF00392 Bacterial regulatory proteins, gntR family KS08_19820 PF07729 FCD domain KS08_19825 PF05163 DinB family KS08_19830 PF07690 Major Facilitator Superfamily KS08_19840 PF00881 Nitroreductase family KS08_19845 PF01047 MarR family KS08_19850 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) KS08_19850 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 KS08_19855 PF01047 MarR family KS08_19860 PF13673 Acetyltransferase (GNAT) domain KS08_19870 PF00392 Bacterial regulatory proteins, gntR family KS08_19870 PF00155 Aminotransferase class I and II KS08_19875 PF00892 EamA-like transporter family KS08_19880 PF03190 Protein of unknown function, DUF255 KS08_19885 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) KS08_19890 PF03190 Protein of unknown function, DUF255 KS08_19895 PF02517 CPBP intramembrane metalloprotease KS08_19900 PF00083 Sugar (and other) transporter KS08_19905 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily KS08_19910 PF00356 Bacterial regulatory proteins, lacI family KS08_19910 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family KS08_19915 PF03372 Endonuclease/Exonuclease/phosphatase family KS08_19920 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain KS08_19920 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain KS08_19925 PF12833 Helix-turn-helix domain KS08_19925 PF02805 Metal binding domain of Ada KS08_19930 PF01084 Ribosomal protein S18 KS08_19935 PF00436 Single-strand binding protein family KS08_19940 PF01250 Ribosomal protein S6 KS08_19945 PF06071 Protein of unknown function (DUF933) KS08_19945 PF01926 50S ribosome-binding GTPase KS08_19950 PF00384 Molybdopterin oxidoreductase KS08_19950 PF01568 Molydopterin dinucleotide binding domain KS08_19950 PF04879 Molybdopterin oxidoreductase Fe4S4 domain KS08_19955 PF06107 Bacterial protein of unknown function (DUF951) KS08_19970 PF06866 Protein of unknown function (DUF1256) KS08_19975 PF02195 ParB-like nuclease domain KS08_19975 PF17762 HTH domain found in ParB protein KS08_19980 PF13614 AAA domain KS08_19985 PF02195 ParB-like nuclease domain KS08_19985 PF17762 HTH domain found in ParB protein KS08_19990 PF02527 rRNA small subunit methyltransferase G KS08_19995 PF13932 GidA associated domain KS08_19995 PF01134 Glucose inhibited division protein A KS08_20000 PF12631 MnmE helical domain KS08_20000 PF10396 GTP-binding protein TrmE N-terminus KS08_20000 PF01926 50S ribosome-binding GTPase KS08_20005 PF01424 R3H domain KS08_20005 PF14804 Jag N-terminus KS08_20010 PF02096 60Kd inner membrane protein KS08_20015 PF00825 Ribonuclease P KS08_20020 PF00468 Ribosomal protein L34