KS08_00005 SM00382 ATPases associated with a variety of cellular activities KS08_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain KS08_00010 SM00480 DNA polymerase III beta subunit KS08_00030 SM00387 Histidine kinase-like ATPases KS08_00030 SM00433 TopoisomeraseII KS08_00035 SM00434 DNA Topoisomerase IV KS08_00070 SM00116 Domain in cystathionine beta-synthase and other proteins. KS08_00070 SM01240 KS08_00070 KS08_00075 SM00936 Penicillin-binding protein 5, C-terminal domain KS08_00115 SM00257 Lysin motif KS08_00115 SM00636 KS08_00115 KS08_00130 SM00382 ATPases associated with a variety of cellular activities KS08_00140 SM00493 KS08_00140 KS08_00235 SM00465 GIY-YIG type nucleases (URI domain) KS08_00245 SM00966 SpoVT / AbrB like domain KS08_00260 SM01208 KS08_00260 KS08_00265 SM00493 KS08_00265 KS08_00270 SM00650 Ribosomal RNA adenine dimethylases KS08_00315 SM01400 KS08_00315 KS08_00335 SM00487 DEAD-like helicases superfamily KS08_00335 SM00490 helicase superfamily c-terminal domain KS08_00335 SM00982 KS08_00335 KS08_00335 SM01058 CarD-like/TRCF domain KS08_00340 SM00966 SpoVT / AbrB like domain KS08_00355 SM00363 S4 RNA-binding domain KS08_00375 SM00316 Ribosomal protein S1-like RNA-binding domain KS08_00390 SM00331 Sigma factor PP2C-like phosphatases KS08_00390 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain KS08_00400 SM00220 Serine/Threonine protein kinases, catalytic domain KS08_00405 SM00977 TilS substrate C-terminal domain KS08_00415 SM00382 ATPases associated with a variety of cellular activities KS08_00460 SM00905 Dihydroneopterin aldolase KS08_00470 SM00530 Helix-turn-helix XRE-family like proteins KS08_00515 SM00382 ATPases associated with a variety of cellular activities KS08_00515 SM01086 C-terminal, D2-small domain, of ClpB protein KS08_00520 SM00382 ATPases associated with a variety of cellular activities KS08_00530 SM00670 Large family of predicted nucleotide-binding domains KS08_00560 SM00840 KS08_00560 KS08_00565 SM00535 Ribonuclease III family KS08_00570 SM00967 RNA 2'-O ribose methyltransferase substrate binding KS08_00595 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. KS08_00595 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. KS08_00600 SM00649 Ribosomal protein L11/L12 KS08_00630 SM00663 RNA polymerase I subunit A N-terminus KS08_00650 SM00838 Elongation factor G C-terminus KS08_00650 SM00889 Elongation factor G, domain IV KS08_00665 SM01403 KS08_00665 KS08_00685 SM01382 KS08_00685 KS08_00685 SM01383 KS08_00685 KS08_00700 SM00322 K homology RNA-binding domain KS08_00720 SM01374 KS08_00720 KS08_00725 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. KS08_00790 SM00316 Ribosomal protein S1-like RNA-binding domain KS08_00810 SM00662 RNA polymerases D KS08_00820 SM00382 ATPases associated with a variety of cellular activities KS08_00825 SM00382 ATPases associated with a variety of cellular activities KS08_00860 SM00646 KS08_00860 KS08_00875 SM01251 KS08_00875 KS08_00915 SM00829 Enoylreductase KS08_00950 SM00342 helix_turn_helix, arabinose operon control protein KS08_01085 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_01105 SM00421 helix_turn_helix, Lux Regulon KS08_01105 SM00448 cheY-homologous receiver domain KS08_01110 SM00382 ATPases associated with a variety of cellular activities KS08_01185 SM00530 Helix-turn-helix XRE-family like proteins KS08_01220 SM00450 Rhodanese Homology Domain KS08_01255 SM00387 Histidine kinase-like ATPases KS08_01260 SM00448 cheY-homologous receiver domain KS08_01390 SM00028 Tetratricopeptide repeats KS08_01400 SM00642 Alpha-amylase domain KS08_01420 SM00382 ATPases associated with a variety of cellular activities KS08_01470 SM00116 Domain in cystathionine beta-synthase and other proteins. KS08_01470 SM00382 ATPases associated with a variety of cellular activities KS08_01515 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_01615 SM00833 Cobalamin synthesis protein cobW C-terminal domain KS08_01655 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family KS08_01670 SM00823 Phosphopantetheine attachment site KS08_01675 SM00823 Phosphopantetheine attachment site KS08_01680 SM00823 Phosphopantetheine attachment site KS08_01705 SM00382 ATPases associated with a variety of cellular activities KS08_01715 SM00062 Bacterial periplasmic substrate-binding proteins KS08_01750 SM00710 Parallel beta-helix repeats KS08_01785 SM00062 Bacterial periplasmic substrate-binding proteins KS08_01795 SM00382 ATPases associated with a variety of cellular activities KS08_01810 SM00382 ATPases associated with a variety of cellular activities KS08_01820 SM00448 cheY-homologous receiver domain KS08_01820 SM00862 Transcriptional regulatory protein, C terminal KS08_01825 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain KS08_01825 SM00387 Histidine kinase-like ATPases KS08_01825 SM00388 His Kinase A (phosphoacceptor) domain KS08_01830 SM00028 Tetratricopeptide repeats KS08_01860 SM00382 ATPases associated with a variety of cellular activities KS08_01890 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor KS08_01895 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_01930 SM00420 helix_turn_helix, Deoxyribose operon repressor KS08_01985 SM00796 Allophanate hydrolase subunit 1 KS08_01990 SM00797 Allophanate hydrolase subunit 2 KS08_01995 SM00346 helix_turn_helix isocitrate lyase regulation KS08_02065 SM00344 helix_turn_helix ASNC type KS08_02070 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain KS08_02070 SM00437 Bacterial DNA topoisomerase I DNA-binding domain KS08_02070 SM00493 KS08_02070 KS08_02080 SM00267 diguanylate cyclase KS08_02115 SM00257 Lysin motif KS08_02135 SM00028 Tetratricopeptide repeats KS08_02210 SM00091 PAS domain KS08_02210 SM00387 Histidine kinase-like ATPases KS08_02215 SM00448 cheY-homologous receiver domain KS08_02230 SM00382 ATPases associated with a variety of cellular activities KS08_02280 SM00487 DEAD-like helicases superfamily KS08_02280 SM00490 helicase superfamily c-terminal domain KS08_02310 SM01005 Alanine racemase, C-terminal domain KS08_02335 SM00387 Histidine kinase-like ATPases KS08_02340 SM00331 Sigma factor PP2C-like phosphatases KS08_02360 SM00331 Sigma factor PP2C-like phosphatases KS08_02360 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain KS08_02365 SM00316 Ribosomal protein S1-like RNA-binding domain KS08_02365 SM00732 Likely ribonuclease with RNase H fold. KS08_02375 SM00731 SprT homologues. KS08_02425 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_02435 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_02475 SM00357 Cold shock protein domain KS08_02495 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_02545 SM00342 helix_turn_helix, arabinose operon control protein KS08_02545 SM00871 Bacterial transcription activator, effector binding domain KS08_02570 SM00829 Enoylreductase KS08_02575 SM00422 helix_turn_helix, mercury resistance KS08_02585 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_02610 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_02650 SM00382 ATPases associated with a variety of cellular activities KS08_02675 SM00825 Beta-ketoacyl synthase KS08_02680 SM00530 Helix-turn-helix XRE-family like proteins KS08_02695 SM00422 helix_turn_helix, mercury resistance KS08_02715 SM01329 KS08_02715 KS08_02720 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_02720 SM00895 KS08_02720 KS08_02750 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_02750 SM00866 KS08_02750 KS08_02755 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_02755 SM00895 KS08_02755 KS08_02795 SM00829 Enoylreductase KS08_02865 SM00382 ATPases associated with a variety of cellular activities KS08_02875 SM00881 CoA binding domain KS08_02900 SM00883 Chaperonin 10 Kd subunit KS08_02925 SM00028 Tetratricopeptide repeats KS08_02925 SM00382 ATPases associated with a variety of cellular activities KS08_02930 SM00829 Enoylreductase KS08_02985 SM00829 Enoylreductase KS08_03040 SM00460 Transglutaminase/protease-like homologues KS08_03085 SM01001 AIR carboxylase KS08_03095 SM00998 Adenylosuccinate lyase C-terminus KS08_03110 SM01211 KS08_03110 KS08_03135 SM00798 AICARFT/IMPCHase bienzyme KS08_03135 SM00851 MGS-like domain KS08_03140 SM01209 KS08_03140 KS08_03140 SM01210 KS08_03140 KS08_03145 SM00344 helix_turn_helix ASNC type KS08_03195 SM00278 Helix-hairpin-helix DNA-binding motif class 1 KS08_03195 SM00292 breast cancer carboxy-terminal domain KS08_03195 SM00532 Ligase N family KS08_03230 SM00845 GatB domain KS08_03245 SM00046 Diacylglycerol kinase catalytic domain (presumed) KS08_03255 SM00382 ATPases associated with a variety of cellular activities KS08_03260 SM00382 ATPases associated with a variety of cellular activities KS08_03365 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_03435 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). KS08_03450 SM00382 ATPases associated with a variety of cellular activities KS08_03455 SM00422 helix_turn_helix, mercury resistance KS08_03465 SM00382 ATPases associated with a variety of cellular activities KS08_03470 SM00487 DEAD-like helicases superfamily KS08_03470 SM00490 helicase superfamily c-terminal domain KS08_03475 SM00829 Enoylreductase KS08_03490 SM00656 KS08_03490 KS08_03515 SM00387 Histidine kinase-like ATPases KS08_03515 SM00388 His Kinase A (phosphoacceptor) domain KS08_03515 SM00448 cheY-homologous receiver domain KS08_03520 SM00448 cheY-homologous receiver domain KS08_03535 SM00387 Histidine kinase-like ATPases KS08_03540 SM00448 cheY-homologous receiver domain KS08_03555 SM00849 Metallo-beta-lactamase superfamily KS08_03635 SM00642 Alpha-amylase domain KS08_03640 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_03640 SM00866 KS08_03640 KS08_03670 SM00354 helix_turn _helix lactose operon repressor KS08_03695 SM00226 Low molecular weight phosphatase family KS08_03765 SM00478 endonuclease III KS08_03785 SM00382 ATPases associated with a variety of cellular activities KS08_03790 SM00220 Serine/Threonine protein kinases, catalytic domain KS08_03790 SM01260 KS08_03790 KS08_03815 SM00861 Transketolase, pyrimidine binding domain KS08_03830 SM00382 ATPases associated with a variety of cellular activities KS08_03860 SM00382 ATPases associated with a variety of cellular activities KS08_03865 SM00382 ATPases associated with a variety of cellular activities KS08_03915 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_03985 SM00287 Bacterial SH3 domain homologues KS08_04015 SM00478 endonuclease III KS08_04015 SM00525 KS08_04015 KS08_04045 SM00382 ATPases associated with a variety of cellular activities KS08_04215 SM00382 ATPases associated with a variety of cellular activities KS08_04220 SM00382 ATPases associated with a variety of cellular activities KS08_04225 SM01060 KS08_04225 KS08_04235 SM00382 ATPases associated with a variety of cellular activities KS08_04240 SM00062 Bacterial periplasmic substrate-binding proteins KS08_04275 SM00530 Helix-turn-helix XRE-family like proteins KS08_04290 SM00567 E-Z type HEAT repeats KS08_04320 SM00763 PrkA AAA domain KS08_04330 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_04360 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_04365 SM00382 ATPases associated with a variety of cellular activities KS08_04370 SM00382 ATPases associated with a variety of cellular activities KS08_04380 SM00357 Cold shock protein domain KS08_04390 SM00267 diguanylate cyclase KS08_04445 SM00116 Domain in cystathionine beta-synthase and other proteins. KS08_04490 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. KS08_04490 SM00387 Histidine kinase-like ATPases KS08_04495 SM00421 helix_turn_helix, Lux Regulon KS08_04495 SM00448 cheY-homologous receiver domain KS08_04515 SM00257 Lysin motif KS08_04535 SM00098 Alkaline phosphatase homologues KS08_04540 SM00257 Lysin motif KS08_04585 SM00563 Phosphate acyltransferases KS08_04590 SM01091 Transporter associated domain KS08_04595 SM00422 helix_turn_helix, mercury resistance KS08_04605 SM00825 Beta-ketoacyl synthase KS08_04610 SM01091 Transporter associated domain KS08_04670 SM00382 ATPases associated with a variety of cellular activities KS08_04675 SM00382 ATPases associated with a variety of cellular activities KS08_04725 SM00729 Elongator protein 3, MiaB family, Radical SAM KS08_04760 SM00382 ATPases associated with a variety of cellular activities KS08_04780 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. KS08_04820 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_04850 SM00382 ATPases associated with a variety of cellular activities KS08_04935 SM00849 Metallo-beta-lactamase superfamily KS08_04975 SM00855 Phosphoglycerate mutase family KS08_04995 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). KS08_05010 SM00914 KS08_05010 KS08_05035 SM00894 Excalibur calcium-binding domain KS08_05075 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_05200 SM00342 helix_turn_helix, arabinose operon control protein KS08_05205 SM00354 helix_turn _helix lactose operon repressor KS08_05225 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_05250 SM00316 Ribosomal protein S1-like RNA-binding domain KS08_05260 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). KS08_05260 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain KS08_05325 SM00859 Semialdehyde dehydrogenase, NAD binding domain KS08_05345 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain KS08_05350 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain KS08_05350 SM01209 KS08_05350 KS08_05400 SM00825 Beta-ketoacyl synthase KS08_05410 SM00382 ATPases associated with a variety of cellular activities KS08_05415 SM00382 ATPases associated with a variety of cellular activities KS08_05460 SM00382 ATPases associated with a variety of cellular activities KS08_05465 SM00382 ATPases associated with a variety of cellular activities KS08_05530 SM01118 KS08_05530 KS08_05540 SM00954 Region found in RelA / SpoT proteins KS08_05670 SM00849 Metallo-beta-lactamase superfamily KS08_05680 SM00382 ATPases associated with a variety of cellular activities KS08_05685 SM00966 SpoVT / AbrB like domain KS08_05735 SM00318 Staphylococcal nuclease homologues KS08_05735 SM00894 Excalibur calcium-binding domain KS08_05740 SM00530 Helix-turn-helix XRE-family like proteins KS08_05745 SM00530 Helix-turn-helix XRE-family like proteins KS08_05795 SM00382 ATPases associated with a variety of cellular activities KS08_05855 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain KS08_05975 SM00257 Lysin motif KS08_06035 SM00644 KS08_06035 KS08_06055 SM00860 SMI1 / KNR4 family KS08_06095 SM00860 SMI1 / KNR4 family KS08_06165 SM00612 KS08_06165 KS08_06195 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_06220 SM00420 helix_turn_helix, Deoxyribose operon repressor KS08_06220 SM01134 KS08_06220 KS08_06235 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_06260 SM00926 Molybdopterin oxidoreductase Fe4S4 domain KS08_06260 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region KS08_06295 SM00382 ATPases associated with a variety of cellular activities KS08_06325 SM00354 helix_turn _helix lactose operon repressor KS08_06335 SM00448 cheY-homologous receiver domain KS08_06335 SM00862 Transcriptional regulatory protein, C terminal KS08_06340 SM00387 Histidine kinase-like ATPases KS08_06340 SM00388 His Kinase A (phosphoacceptor) domain KS08_06360 SM00028 Tetratricopeptide repeats KS08_06370 SM00257 Lysin motif KS08_06370 SM00644 KS08_06370 KS08_06390 SM00530 Helix-turn-helix XRE-family like proteins KS08_06405 SM00382 ATPases associated with a variety of cellular activities KS08_06505 SM00257 Lysin motif KS08_06570 SM00257 Lysin motif KS08_06570 SM00644 KS08_06570 KS08_06615 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. KS08_06640 SM00382 ATPases associated with a variety of cellular activities KS08_06655 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain KS08_06665 SM00382 ATPases associated with a variety of cellular activities KS08_06705 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase KS08_06720 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_06740 SM00028 Tetratricopeptide repeats KS08_06755 SM00100 Cyclic nucleotide-monophosphate binding domain KS08_06780 SM00382 ATPases associated with a variety of cellular activities KS08_06790 SM00257 Lysin motif KS08_06790 SM00636 KS08_06790 KS08_06805 SM00116 Domain in cystathionine beta-synthase and other proteins. KS08_06805 SM00924 MgtE intracellular N domain KS08_06810 SM00422 helix_turn_helix, mercury resistance KS08_06825 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_06840 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen KS08_06845 SM00052 Putative diguanylate phosphodiesterase KS08_06845 SM00267 diguanylate cyclase KS08_06910 SM00091 PAS domain KS08_06910 SM00387 Histidine kinase-like ATPases KS08_06910 SM00388 His Kinase A (phosphoacceptor) domain KS08_06950 SM01007 Class II Aldolase and Adducin N-terminal domain KS08_06965 SM00387 Histidine kinase-like ATPases KS08_06965 SM00388 His Kinase A (phosphoacceptor) domain KS08_06970 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_06985 SM00382 ATPases associated with a variety of cellular activities KS08_06985 SM01086 C-terminal, D2-small domain, of ClpB protein KS08_07065 SM00354 helix_turn _helix lactose operon repressor KS08_07070 SM01061 CAT RNA binding domain KS08_07100 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). KS08_07100 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain KS08_07125 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) KS08_07125 SM00091 PAS domain KS08_07125 SM00387 Histidine kinase-like ATPases KS08_07125 SM00388 His Kinase A (phosphoacceptor) domain KS08_07140 SM00260 Two component signalling adaptor domain KS08_07140 SM00448 cheY-homologous receiver domain KS08_07155 SM00257 Lysin motif KS08_07175 SM00052 Putative diguanylate phosphodiesterase KS08_07270 SM00852 Probable molybdopterin binding domain KS08_07300 SM00382 ATPases associated with a variety of cellular activities KS08_07310 SM00420 helix_turn_helix, Deoxyribose operon repressor KS08_07310 SM01134 KS08_07310 KS08_07335 SM00382 ATPases associated with a variety of cellular activities KS08_07360 SM00966 SpoVT / AbrB like domain KS08_07365 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) KS08_07365 SM00091 PAS domain KS08_07365 SM00387 Histidine kinase-like ATPases KS08_07365 SM00388 His Kinase A (phosphoacceptor) domain KS08_07385 SM00849 Metallo-beta-lactamase superfamily KS08_07420 SM00861 Transketolase, pyrimidine binding domain KS08_07500 SM00838 Elongation factor G C-terminus KS08_07520 SM00670 Large family of predicted nucleotide-binding domains KS08_07545 SM00878 Biotin carboxylase C-terminal domain KS08_07590 SM00116 Domain in cystathionine beta-synthase and other proteins. KS08_07695 SM00740 KS08_07695 KS08_07700 SM00740 KS08_07700 KS08_07750 SM00842 Cell division protein FtsA KS08_07755 SM00864 Tubulin/FtsZ family, GTPase domain KS08_07755 SM00865 Tubulin/FtsZ family, C-terminal domain KS08_07780 SM00382 ATPases associated with a variety of cellular activities KS08_07815 SM00363 S4 RNA-binding domain KS08_07845 SM00363 S4 RNA-binding domain KS08_07870 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain KS08_07875 SM00851 MGS-like domain KS08_07875 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain KS08_07890 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family KS08_07940 SM00642 Alpha-amylase domain KS08_07950 SM00831 Cation transporter/ATPase, N-terminus KS08_07965 SM00072 Guanylate kinase homologues. KS08_07970 SM01409 KS08_07970 KS08_07980 SM00487 DEAD-like helicases superfamily KS08_07980 SM00490 helicase superfamily c-terminal domain KS08_08005 SM00331 Sigma factor PP2C-like phosphatases KS08_08005 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain KS08_08010 SM00220 Serine/Threonine protein kinases, catalytic domain KS08_08010 SM00740 KS08_08010 KS08_08025 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain KS08_08045 SM01120 KS08_08045 KS08_08045 SM01121 KS08_08045 KS08_08060 SM00487 DEAD-like helicases superfamily KS08_08060 SM00490 helicase superfamily c-terminal domain KS08_08075 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. KS08_08080 SM00822 KS08_08080 KS08_08090 SM00358 Double-stranded RNA binding motif KS08_08090 SM00535 Ribonuclease III family KS08_08095 SM00968 SMC proteins Flexible Hinge Domain KS08_08100 SM00382 ATPases associated with a variety of cellular activities KS08_08100 SM00962 SRP54-type protein, GTPase domain KS08_08100 SM00963 SRP54-type protein, helical bundle domain KS08_08110 SM00382 ATPases associated with a variety of cellular activities KS08_08110 SM00962 SRP54-type protein, GTPase domain KS08_08110 SM00963 SRP54-type protein, helical bundle domain KS08_08170 SM00881 CoA binding domain KS08_08180 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain KS08_08180 SM00437 Bacterial DNA topoisomerase I DNA-binding domain KS08_08180 SM00493 KS08_08180 KS08_08200 SM00382 ATPases associated with a variety of cellular activities KS08_08200 SM01086 C-terminal, D2-small domain, of ClpB protein KS08_08240 SM00382 ATPases associated with a variety of cellular activities KS08_08290 SM00448 cheY-homologous receiver domain KS08_08325 SM00962 SRP54-type protein, GTPase domain KS08_08335 SM00448 cheY-homologous receiver domain KS08_08340 SM00073 Histidine Phosphotransfer domain KS08_08340 SM00260 Two component signalling adaptor domain KS08_08340 SM00387 Histidine kinase-like ATPases KS08_08340 SM01231 KS08_08340 KS08_08345 SM00260 Two component signalling adaptor domain KS08_08405 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. KS08_08415 SM00479 KS08_08415 KS08_08415 SM00481 DNA polymerase alpha chain like domain KS08_08425 SM00316 Ribosomal protein S1-like RNA-binding domain KS08_08425 SM00322 K homology RNA-binding domain KS08_08460 SM00904 Riboflavin kinase KS08_08465 SM01387 KS08_08465 KS08_08470 SM00316 Ribosomal protein S1-like RNA-binding domain KS08_08470 SM00322 K homology RNA-binding domain KS08_08500 SM00859 Semialdehyde dehydrogenase, NAD binding domain KS08_08510 SM01130 KS08_08510 KS08_08515 SM00849 Metallo-beta-lactamase superfamily KS08_08530 SM00382 ATPases associated with a variety of cellular activities KS08_08530 SM00843 KS08_08530 KS08_08535 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_08535 SM00866 KS08_08535 KS08_08545 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_08580 SM00530 Helix-turn-helix XRE-family like proteins KS08_08590 SM00852 Probable molybdopterin binding domain KS08_08595 SM00382 ATPases associated with a variety of cellular activities KS08_08605 SM00322 K homology RNA-binding domain KS08_08605 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. KS08_08620 SM00829 Enoylreductase KS08_08630 SM00729 Elongator protein 3, MiaB family, Radical SAM KS08_08645 SM00533 DNA-binding domain of DNA mismatch repair MUTS family KS08_08645 SM00534 ATPase domain of DNA mismatch repair MUTS family KS08_08650 SM00853 MutL C terminal dimerisation domain KS08_08650 SM01340 KS08_08650 KS08_08655 SM00849 Metallo-beta-lactamase superfamily KS08_08660 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. KS08_08665 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. KS08_08670 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. KS08_08695 SM00822 KS08_08695 KS08_08695 SM00823 Phosphopantetheine attachment site KS08_08695 SM00825 Beta-ketoacyl synthase KS08_08695 SM00826 KS08_08695 KS08_08695 SM01294 KS08_08695 KS08_08700 SM00822 KS08_08700 KS08_08700 SM00823 Phosphopantetheine attachment site KS08_08700 SM00825 Beta-ketoacyl synthase KS08_08700 SM00826 KS08_08700 KS08_08700 SM01294 KS08_08700 KS08_08705 SM00822 KS08_08705 KS08_08705 SM00823 Phosphopantetheine attachment site KS08_08705 SM00825 Beta-ketoacyl synthase KS08_08705 SM00826 KS08_08705 KS08_08705 SM01294 KS08_08705 KS08_08710 SM00822 KS08_08710 KS08_08710 SM00823 Phosphopantetheine attachment site KS08_08710 SM00825 Beta-ketoacyl synthase KS08_08710 SM00826 KS08_08710 KS08_08710 SM01294 KS08_08710 KS08_08715 SM00823 Phosphopantetheine attachment site KS08_08715 SM00825 Beta-ketoacyl synthase KS08_08715 SM01294 KS08_08715 KS08_08830 SM00382 ATPases associated with a variety of cellular activities KS08_08845 SM00422 helix_turn_helix, mercury resistance KS08_08850 SM01230 KS08_08850 KS08_08925 SM00829 Enoylreductase KS08_08955 SM00829 Enoylreductase KS08_09030 SM00710 Parallel beta-helix repeats KS08_09075 SM00257 Lysin motif KS08_09080 SM00857 Resolvase, N terminal domain KS08_09090 SM00861 Transketolase, pyrimidine binding domain KS08_09115 SM00448 cheY-homologous receiver domain KS08_09185 SM01207 KS08_09185 KS08_09190 SM00881 CoA binding domain KS08_09195 SM00387 Histidine kinase-like ATPases KS08_09195 SM00433 TopoisomeraseII KS08_09200 SM00434 DNA Topoisomerase IV KS08_09245 SM00387 Histidine kinase-like ATPases KS08_09245 SM00388 His Kinase A (phosphoacceptor) domain KS08_09250 SM00448 cheY-homologous receiver domain KS08_09250 SM00862 Transcriptional regulatory protein, C terminal KS08_09260 SM00606 Cellulose Binding Domain Type IV KS08_09265 SM00823 Phosphopantetheine attachment site KS08_09265 SM00824 Thioesterase KS08_09270 SM00823 Phosphopantetheine attachment site KS08_09275 SM00823 Phosphopantetheine attachment site KS08_09275 SM00825 Beta-ketoacyl synthase KS08_09280 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. KS08_09290 SM00882 Coenzyme A transferase KS08_09295 SM00882 Coenzyme A transferase KS08_09305 SM00729 Elongator protein 3, MiaB family, Radical SAM KS08_09305 SM00876 Biotin and Thiamin Synthesis associated domain KS08_09365 SM00878 Biotin carboxylase C-terminal domain KS08_09390 SM00824 Thioesterase KS08_09395 SM00823 Phosphopantetheine attachment site KS08_09395 SM01294 KS08_09395 KS08_09445 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor KS08_09450 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain KS08_09460 SM00829 Enoylreductase KS08_09485 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase KS08_09500 SM00822 KS08_09500 KS08_09530 SM00926 Molybdopterin oxidoreductase Fe4S4 domain KS08_09545 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_09565 SM00342 helix_turn_helix, arabinose operon control protein KS08_09575 SM00849 Metallo-beta-lactamase superfamily KS08_09585 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor KS08_09620 SM00257 Lysin motif KS08_09625 SM00341 Helicase and RNase D C-terminal KS08_09625 SM00487 DEAD-like helicases superfamily KS08_09625 SM00490 helicase superfamily c-terminal domain KS08_09625 SM00956 KS08_09625 KS08_09710 SM00849 Metallo-beta-lactamase superfamily KS08_09720 SM00861 Transketolase, pyrimidine binding domain KS08_09725 SM00327 von Willebrand factor (vWF) type A domain KS08_09730 SM00382 ATPases associated with a variety of cellular activities KS08_09740 SM00257 Lysin motif KS08_09845 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_09845 SM00866 KS08_09845 KS08_09850 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. KS08_09850 SM00245 tail specific protease KS08_09885 SM00014 Acid phosphatase homologues KS08_09935 SM00882 Coenzyme A transferase KS08_09940 SM00882 Coenzyme A transferase KS08_09955 SM00871 Bacterial transcription activator, effector binding domain KS08_10025 SM00857 Resolvase, N terminal domain KS08_10045 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_10120 SM00567 E-Z type HEAT repeats KS08_10120 SM00932 Scaffold protein Nfu/NifU N terminal KS08_10125 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. KS08_10145 SM00357 Cold shock protein domain KS08_10185 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs KS08_10185 SM00475 5'-3' exonuclease KS08_10320 SM00497 Intron encoded nuclease repeat motif KS08_10330 SM00507 HNH nucleases KS08_10480 SM00482 DNA polymerase A domain KS08_10530 SM00710 Parallel beta-helix repeats KS08_10705 SM00530 Helix-turn-helix XRE-family like proteins KS08_10870 SM00864 Tubulin/FtsZ family, GTPase domain KS08_10895 SM00411 bacterial (prokaryotic) histone like domain KS08_10925 SM00305 Hint (Hedgehog/Intein) domain C-terminal region KS08_10925 SM00306 Hint (Hedgehog/Intein) domain N-terminal region KS08_11030 SM00220 Serine/Threonine protein kinases, catalytic domain KS08_11075 SM00710 Parallel beta-helix repeats KS08_11080 SM00644 KS08_11080 KS08_11135 SM00860 SMI1 / KNR4 family KS08_11150 SM00860 SMI1 / KNR4 family KS08_11155 SM00318 Staphylococcal nuclease homologues KS08_11155 SM00894 Excalibur calcium-binding domain KS08_11160 SM00857 Resolvase, N terminal domain KS08_11180 SM00491 KS08_11180 KS08_11195 SM00981 KS08_11195 KS08_11220 SM00487 DEAD-like helicases superfamily KS08_11220 SM00490 helicase superfamily c-terminal domain KS08_11270 SM00060 Fibronectin type 3 domain KS08_11280 SM00478 endonuclease III KS08_11280 SM00525 KS08_11280 KS08_11310 SM00479 KS08_11310 KS08_11310 SM00487 DEAD-like helicases superfamily KS08_11310 SM00491 KS08_11310 KS08_11350 SM00851 MGS-like domain KS08_11370 SM00835 Cupin KS08_11405 SM00914 KS08_11405 KS08_11410 SM00028 Tetratricopeptide repeats KS08_11475 SM00138 Methyltransferase, chemotaxis proteins KS08_11480 SM00562 KS08_11480 KS08_11510 SM00411 bacterial (prokaryotic) histone like domain KS08_11555 SM00316 Ribosomal protein S1-like RNA-binding domain KS08_11595 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KS08_11615 SM00257 Lysin motif KS08_11625 SM00487 DEAD-like helicases superfamily KS08_11625 SM00490 helicase superfamily c-terminal domain KS08_11660 SM00091 PAS domain KS08_11660 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain KS08_11660 SM00387 Histidine kinase-like ATPases KS08_11660 SM00388 His Kinase A (phosphoacceptor) domain KS08_11665 SM00448 cheY-homologous receiver domain KS08_11665 SM00862 Transcriptional regulatory protein, C terminal KS08_11685 SM00363 S4 RNA-binding domain KS08_11820 SM00387 Histidine kinase-like ATPases KS08_11830 SM00936 Penicillin-binding protein 5, C-terminal domain KS08_11875 SM00919 Malic enzyme, NAD binding domain KS08_11875 SM01274 KS08_11875 KS08_11890 SM00870 KS08_11890 KS08_11895 SM00530 Helix-turn-helix XRE-family like proteins KS08_11985 SM00849 Metallo-beta-lactamase superfamily KS08_12035 SM01350 KS08_12035 KS08_12085 SM00382 ATPases associated with a variety of cellular activities KS08_12095 SM00062 Bacterial periplasmic substrate-binding proteins KS08_12095 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. KS08_12105 SM00046 Diacylglycerol kinase catalytic domain (presumed) KS08_12115 SM00861 Transketolase, pyrimidine binding domain KS08_12135 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KS08_12145 SM00091 PAS domain KS08_12145 SM00382 ATPases associated with a variety of cellular activities KS08_12190 SM00646 KS08_12190 KS08_12205 SM00530 Helix-turn-helix XRE-family like proteins KS08_12230 SM01005 Alanine racemase, C-terminal domain KS08_12235 SM00448 cheY-homologous receiver domain KS08_12245 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. KS08_12260 SM00363 S4 RNA-binding domain KS08_12265 SM00861 Transketolase, pyrimidine binding domain KS08_12300 SM00878 Biotin carboxylase C-terminal domain KS08_12345 SM00382 ATPases associated with a variety of cellular activities KS08_12355 SM00841 Elongation factor P, C-terminal KS08_12355 SM01185 KS08_12355 KS08_12385 SM00529 Helix-turn-helix diphteria tox regulatory element KS08_12395 SM00450 Rhodanese Homology Domain KS08_12415 SM00487 DEAD-like helicases superfamily KS08_12415 SM00490 helicase superfamily c-terminal domain KS08_12430 SM00530 Helix-turn-helix XRE-family like proteins KS08_12490 SM00382 ATPases associated with a variety of cellular activities KS08_12500 SM01091 Transporter associated domain KS08_12525 SM00849 Metallo-beta-lactamase superfamily KS08_12545 SM00631 KS08_12545 KS08_12590 SM00382 ATPases associated with a variety of cellular activities KS08_12595 SM00382 ATPases associated with a variety of cellular activities KS08_12640 SM00257 Lysin motif KS08_12675 SM00518 AP endonuclease family 2 KS08_12680 SM00487 DEAD-like helicases superfamily KS08_12680 SM00490 helicase superfamily c-terminal domain KS08_12715 SM00400 zinc finger KS08_12715 SM00493 KS08_12715 KS08_12730 SM00116 Domain in cystathionine beta-synthase and other proteins. KS08_12775 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. KS08_12825 SM00729 Elongator protein 3, MiaB family, Radical SAM KS08_12840 SM00271 DnaJ molecular chaperone homology domain KS08_12860 SM00729 Elongator protein 3, MiaB family, Radical SAM KS08_12865 SM00838 Elongation factor G C-terminus KS08_12900 SM00849 Metallo-beta-lactamase superfamily KS08_12910 SM00278 Helix-hairpin-helix DNA-binding motif class 1 KS08_12930 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. KS08_12940 SM01103 KS08_12940 KS08_12975 SM00644 KS08_12975 KS08_13070 SM00849 Metallo-beta-lactamase superfamily KS08_13120 SM00926 Molybdopterin oxidoreductase Fe4S4 domain KS08_13120 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region KS08_13205 SM00732 Likely ribonuclease with RNase H fold. KS08_13215 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain KS08_13225 SM00382 ATPases associated with a variety of cellular activities KS08_13230 SM00062 Bacterial periplasmic substrate-binding proteins KS08_13230 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. KS08_13260 SM00382 ATPases associated with a variety of cellular activities KS08_13265 SM00028 Tetratricopeptide repeats KS08_13285 SM00382 ATPases associated with a variety of cellular activities KS08_13320 SM00287 Bacterial SH3 domain homologues KS08_13320 SM00646 KS08_13320 KS08_13330 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. KS08_13330 SM00954 Region found in RelA / SpoT proteins KS08_13380 SM01323 KS08_13380 KS08_13400 SM00382 ATPases associated with a variety of cellular activities KS08_13405 SM00278 Helix-hairpin-helix DNA-binding motif class 1 KS08_13420 SM00257 Lysin motif KS08_13465 SM01317 KS08_13465 KS08_13560 SM00257 Lysin motif KS08_13570 SM01004 Delta-aminolevulinic acid dehydratase KS08_13605 SM00382 ATPases associated with a variety of cellular activities KS08_13605 SM00464 Found in ATP-dependent protease La (LON) KS08_13610 SM00382 ATPases associated with a variety of cellular activities KS08_13615 SM00382 ATPases associated with a variety of cellular activities KS08_13615 SM00994 ClpX C4-type zinc finger KS08_13615 SM01086 C-terminal, D2-small domain, of ClpB protein KS08_13640 SM01329 KS08_13640 KS08_13645 SM00917 LeuA allosteric (dimerisation) domain KS08_13700 SM00909 Sporulation and spore germination KS08_13710 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_13715 SM00421 helix_turn_helix, Lux Regulon KS08_13755 SM00465 GIY-YIG type nucleases (URI domain) KS08_13765 SM00813 Alpha-L-arabinofuranosidase C-terminus KS08_13770 SM00893 Electron transfer flavoprotein domain KS08_13775 SM00893 Electron transfer flavoprotein domain KS08_13805 SM00463 Small MutS-related domain KS08_13805 SM00533 DNA-binding domain of DNA mismatch repair MUTS family KS08_13805 SM00534 ATPase domain of DNA mismatch repair MUTS family KS08_13810 SM00278 Helix-hairpin-helix DNA-binding motif class 1 KS08_13810 SM00481 DNA polymerase alpha chain like domain KS08_13810 SM00483 DNA polymerase X family KS08_13830 SM00873 B3/4 domain KS08_13830 SM00874 tRNA synthetase B5 domain KS08_13830 SM00896 Ferredoxin-fold anticodon binding domain KS08_13840 SM00967 RNA 2'-O ribose methyltransferase substrate binding KS08_13870 SM00813 Alpha-L-arabinofuranosidase C-terminus KS08_13900 SM01007 Class II Aldolase and Adducin N-terminal domain KS08_13960 SM00448 cheY-homologous receiver domain KS08_13960 SM00850 LytTr DNA-binding domain KS08_13965 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. KS08_13965 SM00387 Histidine kinase-like ATPases KS08_13975 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain KS08_13990 SM00382 ATPases associated with a variety of cellular activities KS08_14010 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KS08_14040 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain KS08_14040 SM01232 KS08_14040 KS08_14045 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs KS08_14045 SM00474 3'-5' exonuclease KS08_14045 SM00475 5'-3' exonuclease KS08_14045 SM00482 DNA polymerase A domain KS08_14050 SM00091 PAS domain KS08_14050 SM00387 Histidine kinase-like ATPases KS08_14050 SM00388 His Kinase A (phosphoacceptor) domain KS08_14055 SM00448 cheY-homologous receiver domain KS08_14055 SM00862 Transcriptional regulatory protein, C terminal KS08_14065 SM01329 KS08_14065 KS08_14115 SM00919 Malic enzyme, NAD binding domain KS08_14115 SM01274 KS08_14115 KS08_14120 SM00481 DNA polymerase alpha chain like domain KS08_14150 SM00116 Domain in cystathionine beta-synthase and other proteins. KS08_14155 SM00849 Metallo-beta-lactamase superfamily KS08_14180 SM00852 Probable molybdopterin binding domain KS08_14240 SM00981 KS08_14240 KS08_14275 SM00267 diguanylate cyclase KS08_14280 SM00363 S4 RNA-binding domain KS08_14280 SM01390 KS08_14280 KS08_14330 SM00363 S4 RNA-binding domain KS08_14345 SM00116 Domain in cystathionine beta-synthase and other proteins. KS08_14365 SM00354 helix_turn _helix lactose operon repressor KS08_14370 SM00830 Chorismate mutase type II KS08_14395 SM00382 ATPases associated with a variety of cellular activities KS08_14395 SM00843 KS08_14395 KS08_14430 SM00919 Malic enzyme, NAD binding domain KS08_14430 SM01274 KS08_14430 KS08_14435 SM00849 Metallo-beta-lactamase superfamily KS08_14455 SM00046 Diacylglycerol kinase catalytic domain (presumed) KS08_14490 SM00382 ATPases associated with a variety of cellular activities KS08_14495 SM00420 helix_turn_helix, Deoxyribose operon repressor KS08_14500 SM00363 S4 RNA-binding domain KS08_14525 SM00354 helix_turn _helix lactose operon repressor KS08_14555 SM00450 Rhodanese Homology Domain KS08_14570 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) KS08_14570 SM00091 PAS domain KS08_14590 SM00382 ATPases associated with a variety of cellular activities KS08_14595 SM00387 Histidine kinase-like ATPases KS08_14600 SM00448 cheY-homologous receiver domain KS08_14600 SM00862 Transcriptional regulatory protein, C terminal KS08_14610 SM00382 ATPases associated with a variety of cellular activities KS08_14630 SM00382 ATPases associated with a variety of cellular activities KS08_14635 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_14650 SM00729 Elongator protein 3, MiaB family, Radical SAM KS08_14715 SM00382 ATPases associated with a variety of cellular activities KS08_14755 SM01234 KS08_14755 KS08_14760 SM00947 Carbonic anhydrase KS08_14785 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain KS08_14950 SM00244 prohibitin homologues KS08_14995 SM00047 Lysozyme subfamily 2 KS08_15020 SM00028 Tetratricopeptide repeats KS08_15100 SM00710 Parallel beta-helix repeats KS08_15230 SM01040 BRO family, N-terminal domain KS08_15280 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). KS08_15280 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain KS08_15280 SM00319 Homologues of the ligand binding domain of Tar KS08_15285 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). KS08_15285 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain KS08_15285 SM00319 Homologues of the ligand binding domain of Tar KS08_15290 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). KS08_15290 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain KS08_15290 SM00319 Homologues of the ligand binding domain of Tar KS08_15295 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). KS08_15295 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain KS08_15295 SM00319 Homologues of the ligand binding domain of Tar KS08_15320 SM00642 Alpha-amylase domain KS08_15325 SM00116 Domain in cystathionine beta-synthase and other proteins. KS08_15325 SM01091 Transporter associated domain KS08_15380 SM00316 Ribosomal protein S1-like RNA-binding domain KS08_15390 SM00344 helix_turn_helix ASNC type KS08_15410 SM00387 Histidine kinase-like ATPases KS08_15410 SM00388 His Kinase A (phosphoacceptor) domain KS08_15415 SM01298 KS08_15415 KS08_15420 SM00479 KS08_15420 KS08_15445 SM00091 PAS domain KS08_15445 SM00387 Histidine kinase-like ATPases KS08_15450 SM00448 cheY-homologous receiver domain KS08_15460 SM00382 ATPases associated with a variety of cellular activities KS08_15520 SM00421 helix_turn_helix, Lux Regulon KS08_15520 SM00448 cheY-homologous receiver domain KS08_15525 SM00387 Histidine kinase-like ATPases KS08_15550 SM00052 Putative diguanylate phosphodiesterase KS08_15590 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. KS08_15635 SM01002 Alanine dehydrogenase/PNT, C-terminal domain KS08_15635 SM01003 Alanine dehydrogenase/PNT, N-terminal domain KS08_15645 SM00923 MbtH-like protein KS08_15650 SM00823 Phosphopantetheine attachment site KS08_15650 SM00824 Thioesterase KS08_15725 SM01240 KS08_15725 KS08_15740 SM00382 ATPases associated with a variety of cellular activities KS08_15790 SM00257 Lysin motif KS08_15790 SM00644 KS08_15790 KS08_15815 SM00710 Parallel beta-helix repeats KS08_15825 SM00047 Lysozyme subfamily 2 KS08_15955 SM00530 Helix-turn-helix XRE-family like proteins KS08_15985 SM00530 Helix-turn-helix XRE-family like proteins KS08_16100 SM00729 Elongator protein 3, MiaB family, Radical SAM KS08_16170 SM00382 ATPases associated with a variety of cellular activities KS08_16175 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_16175 SM00866 KS08_16175 KS08_16205 SM00422 helix_turn_helix, mercury resistance KS08_16215 SM00752 Horizontally Transferred TransMembrane Domain KS08_16230 SM00465 GIY-YIG type nucleases (URI domain) KS08_16275 SM00382 ATPases associated with a variety of cellular activities KS08_16300 SM00382 ATPases associated with a variety of cellular activities KS08_16300 SM00930 KS08_16300 KS08_16315 SM00493 KS08_16315 KS08_16370 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_16370 SM00529 Helix-turn-helix diphteria tox regulatory element KS08_16385 SM00530 Helix-turn-helix XRE-family like proteins KS08_16400 SM00382 ATPases associated with a variety of cellular activities KS08_16415 SM00822 KS08_16415 KS08_16425 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. KS08_16430 SM00448 cheY-homologous receiver domain KS08_16430 SM00862 Transcriptional regulatory protein, C terminal KS08_16435 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain KS08_16435 SM00387 Histidine kinase-like ATPases KS08_16435 SM00388 His Kinase A (phosphoacceptor) domain KS08_16475 SM00421 helix_turn_helix, Lux Regulon KS08_16475 SM00448 cheY-homologous receiver domain KS08_16480 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain KS08_16480 SM00387 Histidine kinase-like ATPases KS08_16515 SM00382 ATPases associated with a variety of cellular activities KS08_16540 SM00387 Histidine kinase-like ATPases KS08_16540 SM00388 His Kinase A (phosphoacceptor) domain KS08_16545 SM00448 cheY-homologous receiver domain KS08_16545 SM00862 Transcriptional regulatory protein, C terminal KS08_16565 SM00835 Cupin KS08_16575 SM00382 ATPases associated with a variety of cellular activities KS08_16635 SM00421 helix_turn_helix, Lux Regulon KS08_16635 SM00448 cheY-homologous receiver domain KS08_16645 SM00382 ATPases associated with a variety of cellular activities KS08_16755 SM00382 ATPases associated with a variety of cellular activities KS08_16770 SM00062 Bacterial periplasmic substrate-binding proteins KS08_16775 SM00062 Bacterial periplasmic substrate-binding proteins KS08_16805 SM00316 Ribosomal protein S1-like RNA-binding domain KS08_16805 SM00357 Cold shock protein domain KS08_16805 SM00955 KS08_16805 KS08_16820 SM00530 Helix-turn-helix XRE-family like proteins KS08_16825 SM00530 Helix-turn-helix XRE-family like proteins KS08_16830 SM00530 Helix-turn-helix XRE-family like proteins KS08_16840 SM00387 Histidine kinase-like ATPases KS08_16840 SM00388 His Kinase A (phosphoacceptor) domain KS08_16845 SM00448 cheY-homologous receiver domain KS08_16845 SM00862 Transcriptional regulatory protein, C terminal KS08_16860 SM00382 ATPases associated with a variety of cellular activities KS08_16880 SM00116 Domain in cystathionine beta-synthase and other proteins. KS08_16880 SM00382 ATPases associated with a variety of cellular activities KS08_16905 SM00116 Domain in cystathionine beta-synthase and other proteins. KS08_16905 SM00382 ATPases associated with a variety of cellular activities KS08_16975 SM00984 UDP binding domain KS08_16985 SM01192 KS08_16985 KS08_16985 SM01193 KS08_16985 KS08_17010 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain KS08_17025 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_17085 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_17085 SM00895 KS08_17085 KS08_17180 SM00530 Helix-turn-helix XRE-family like proteins KS08_17205 SM00849 Metallo-beta-lactamase superfamily KS08_17260 SM00640 Glycosyl hydrolases family 32 KS08_17270 SM00354 helix_turn _helix lactose operon repressor KS08_17315 SM00947 Carbonic anhydrase KS08_17375 SM00028 Tetratricopeptide repeats KS08_17380 SM00387 Histidine kinase-like ATPases KS08_17380 SM00388 His Kinase A (phosphoacceptor) domain KS08_17385 SM00448 cheY-homologous receiver domain KS08_17385 SM00862 Transcriptional regulatory protein, C terminal KS08_17390 SM00382 ATPases associated with a variety of cellular activities KS08_17470 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_17470 SM00866 KS08_17470 KS08_17510 SM00382 ATPases associated with a variety of cellular activities KS08_17515 SM00487 DEAD-like helicases superfamily KS08_17515 SM00490 helicase superfamily c-terminal domain KS08_17550 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. KS08_17560 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. KS08_17560 SM00245 tail specific protease KS08_17565 SM00710 Parallel beta-helix repeats KS08_17565 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses KS08_17575 SM00382 ATPases associated with a variety of cellular activities KS08_17590 SM00937 KS08_17590 KS08_17595 SM00957 SecA DEAD-like domain KS08_17595 SM00958 SecA preprotein cross-linking domain KS08_17680 SM00487 DEAD-like helicases superfamily KS08_17680 SM00490 helicase superfamily c-terminal domain KS08_17690 SM00421 helix_turn_helix, Lux Regulon KS08_17690 SM00448 cheY-homologous receiver domain KS08_17695 SM00387 Histidine kinase-like ATPases KS08_17735 SM00984 UDP binding domain KS08_17755 SM00646 KS08_17755 KS08_17785 SM00382 ATPases associated with a variety of cellular activities KS08_17820 SM00047 Lysozyme subfamily 2 KS08_17820 SM00287 Bacterial SH3 domain homologues KS08_17880 SM00854 Bacterial capsule synthesis protein PGA_cap KS08_17910 SM00354 helix_turn _helix lactose operon repressor KS08_17925 SM00382 ATPases associated with a variety of cellular activities KS08_17940 SM00287 Bacterial SH3 domain homologues KS08_17990 SM00903 Flavin reductase like domain KS08_18005 SM00344 helix_turn_helix ASNC type KS08_18030 SM00860 SMI1 / KNR4 family KS08_18065 SM00984 UDP binding domain KS08_18095 SM00487 DEAD-like helicases superfamily KS08_18095 SM00490 helicase superfamily c-terminal domain KS08_18105 SM00420 helix_turn_helix, Deoxyribose operon repressor KS08_18105 SM01134 KS08_18105 KS08_18160 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_18190 SM00938 Nitrogen regulatory protein P-II KS08_18200 SM00014 Acid phosphatase homologues KS08_18230 SM00155 Phospholipase D. Active site motifs. KS08_18280 SM00028 Tetratricopeptide repeats KS08_18285 SM00729 Elongator protein 3, MiaB family, Radical SAM KS08_18300 SM00327 von Willebrand factor (vWF) type A domain KS08_18305 SM00327 von Willebrand factor (vWF) type A domain KS08_18340 SM00382 ATPases associated with a variety of cellular activities KS08_18400 SM00226 Low molecular weight phosphatase family KS08_18440 SM00937 KS08_18440 KS08_18460 SM00919 Malic enzyme, NAD binding domain KS08_18460 SM01274 KS08_18460 KS08_18475 SM00357 Cold shock protein domain KS08_18475 SM00382 ATPases associated with a variety of cellular activities KS08_18475 SM00959 Rho termination factor, N-terminal domain KS08_18500 SM00448 cheY-homologous receiver domain KS08_18525 SM00155 Phospholipase D. Active site motifs. KS08_18540 SM00382 ATPases associated with a variety of cellular activities KS08_18545 SM00155 Phospholipase D. Active site motifs. KS08_18565 SM00926 Molybdopterin oxidoreductase Fe4S4 domain KS08_18580 SM00100 Cyclic nucleotide-monophosphate binding domain KS08_18580 SM00419 helix_turn_helix, cAMP Regulatory protein KS08_18590 SM00836 DALR anticodon binding domain KS08_18590 SM01016 Arginyl tRNA synthetase N terminal dom KS08_18615 SM00028 Tetratricopeptide repeats KS08_18660 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_18675 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. KS08_18815 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase KS08_18855 SM00858 KS08_18855 KS08_18900 SM00986 Uracil DNA glycosylase superfamily KS08_18900 SM00987 UreE urease accessory protein, C-terminal domain KS08_18925 SM00640 Glycosyl hydrolases family 32 KS08_18935 SM01061 CAT RNA binding domain KS08_18970 SM00886 Stress responsive A/B Barrel Domain KS08_19105 SM00422 helix_turn_helix, mercury resistance KS08_19115 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase KS08_19140 SM00954 Region found in RelA / SpoT proteins KS08_19160 SM00656 KS08_19160 KS08_19255 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain KS08_19265 SM01133 KS08_19265 KS08_19320 SM00382 ATPases associated with a variety of cellular activities KS08_19325 SM00387 Histidine kinase-like ATPases KS08_19330 SM00448 cheY-homologous receiver domain KS08_19330 SM00862 Transcriptional regulatory protein, C terminal KS08_19385 SM00420 helix_turn_helix, Deoxyribose operon repressor KS08_19385 SM01134 KS08_19385 KS08_19400 SM00387 Histidine kinase-like ATPases KS08_19410 SM00421 helix_turn_helix, Lux Regulon KS08_19410 SM00448 cheY-homologous receiver domain KS08_19435 SM00564 beta-propeller repeat KS08_19445 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor KS08_19490 SM00871 Bacterial transcription activator, effector binding domain KS08_19515 SM01092 CO dehydrogenase flavoprotein C-terminal domain KS08_19520 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain KS08_19590 SM00028 Tetratricopeptide repeats KS08_19615 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor KS08_19620 SM00382 ATPases associated with a variety of cellular activities KS08_19635 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain KS08_19635 SM00387 Histidine kinase-like ATPases KS08_19635 SM00388 His Kinase A (phosphoacceptor) domain KS08_19640 SM00448 cheY-homologous receiver domain KS08_19640 SM00862 Transcriptional regulatory protein, C terminal KS08_19650 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. KS08_19655 SM00849 Metallo-beta-lactamase superfamily KS08_19670 SM00091 PAS domain KS08_19670 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain KS08_19670 SM00387 Histidine kinase-like ATPases KS08_19670 SM00388 His Kinase A (phosphoacceptor) domain KS08_19675 SM00448 cheY-homologous receiver domain KS08_19675 SM00862 Transcriptional regulatory protein, C terminal KS08_19715 SM00382 ATPases associated with a variety of cellular activities KS08_19775 SM00267 diguanylate cyclase KS08_19800 SM01131 KS08_19800 KS08_19815 SM00640 Glycosyl hydrolases family 32 KS08_19820 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_19820 SM00895 KS08_19820 KS08_19845 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_19855 SM00347 helix_turn_helix multiple antibiotic resistance protein KS08_19870 SM00345 helix_turn_helix gluconate operon transcriptional repressor KS08_19910 SM00354 helix_turn _helix lactose operon repressor KS08_19925 SM00342 helix_turn_helix, arabinose operon control protein KS08_19950 SM00926 Molybdopterin oxidoreductase Fe4S4 domain KS08_19975 SM00470 ParB-like nuclease domain KS08_19985 SM00470 ParB-like nuclease domain KS08_19995 SM01228 KS08_19995 KS08_20005 SM00393 Putative single-stranded nucleic acids-binding domain KS08_20005 SM01245 KS08_20005