BEST7613_0001 SM00382 ATPases associated with a variety of cellular activities BEST7613_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain BEST7613_0002 SM00480 DNA polymerase III beta subunit BEST7613_0006 SM00387 Histidine kinase-like ATPases BEST7613_0006 SM00433 TopoisomeraseII BEST7613_0007 SM00434 DNA Topoisomerase IV BEST7613_0009 SM00116 Domain in cystathionine beta-synthase and other proteins. BEST7613_0009 SM01240 BEST7613_0009 BEST7613_0010 SM00936 Penicillin-binding protein 5, C-terminal domain BEST7613_0016 SM00257 Lysin motif BEST7613_0016 SM00636 BEST7613_0016 BEST7613_0019 SM00382 ATPases associated with a variety of cellular activities BEST7613_0021 SM00493 BEST7613_0021 BEST7613_0035 SM00465 GIY-YIG type nucleases (URI domain) BEST7613_0037 SM00966 SpoVT / AbrB like domain BEST7613_0040 SM01208 BEST7613_0040 BEST7613_0041 SM00493 BEST7613_0041 BEST7613_0042 SM00650 Ribosomal RNA adenine dimethylases BEST7613_0051 SM01400 BEST7613_0051 BEST7613_0055 SM00487 DEAD-like helicases superfamily BEST7613_0055 SM00490 helicase superfamily c-terminal domain BEST7613_0055 SM00982 BEST7613_0055 BEST7613_0055 SM01058 CarD-like/TRCF domain BEST7613_0056 SM00966 SpoVT / AbrB like domain BEST7613_0059 SM00363 S4 RNA-binding domain BEST7613_0063 SM00316 Ribosomal protein S1-like RNA-binding domain BEST7613_0064 SM00331 Sigma factor PP2C-like phosphatases BEST7613_0064 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BEST7613_0066 SM00220 Serine/Threonine protein kinases, catalytic domain BEST7613_0067 SM00977 TilS substrate C-terminal domain BEST7613_0069 SM00382 ATPases associated with a variety of cellular activities BEST7613_0078 SM00905 Dihydroneopterin aldolase BEST7613_0080 SM00530 Helix-turn-helix XRE-family like proteins BEST7613_0086 SM00382 ATPases associated with a variety of cellular activities BEST7613_0086 SM01086 C-terminal, D2-small domain, of ClpB protein BEST7613_0087 SM00382 ATPases associated with a variety of cellular activities BEST7613_0089 SM00670 Large family of predicted nucleotide-binding domains BEST7613_0094 SM00840 BEST7613_0094 BEST7613_0095 SM00535 Ribonuclease III family BEST7613_0096 SM00967 RNA 2'-O ribose methyltransferase substrate binding BEST7613_0100 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BEST7613_0100 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BEST7613_0101 SM00649 Ribosomal protein L11/L12 BEST7613_0107 SM00663 RNA polymerase I subunit A N-terminus BEST7613_0111 SM00838 Elongation factor G C-terminus BEST7613_0111 SM00889 Elongation factor G, domain IV BEST7613_0114 SM01403 BEST7613_0114 BEST7613_0118 SM01382 BEST7613_0118 BEST7613_0118 SM01383 BEST7613_0118 BEST7613_0121 SM00322 K homology RNA-binding domain BEST7613_0125 SM01374 BEST7613_0125 BEST7613_0126 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BEST7613_0138 SM00316 Ribosomal protein S1-like RNA-binding domain BEST7613_0141 SM00662 RNA polymerases D BEST7613_0143 SM00382 ATPases associated with a variety of cellular activities BEST7613_0144 SM00382 ATPases associated with a variety of cellular activities BEST7613_0151 SM00646 BEST7613_0151 BEST7613_0154 SM01251 BEST7613_0154 BEST7613_0163 SM00342 helix_turn_helix, arabinose operon control protein BEST7613_0179 SM00478 endonuclease III BEST7613_0180 SM00342 helix_turn_helix, arabinose operon control protein BEST7613_0188 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BEST7613_0192 SM00729 Elongator protein 3, MiaB family, Radical SAM BEST7613_0194 SM00382 ATPases associated with a variety of cellular activities BEST7613_0199 SM00448 cheY-homologous receiver domain BEST7613_0199 SM00862 Transcriptional regulatory protein, C terminal BEST7613_0200 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEST7613_0200 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_0215 SM00347 helix_turn_helix multiple antibiotic resistance protein BEST7613_0221 SM00342 helix_turn_helix, arabinose operon control protein BEST7613_0231 SM00342 helix_turn_helix, arabinose operon control protein BEST7613_0232 SM00450 Rhodanese Homology Domain BEST7613_0236 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEST7613_0236 SM00866 BEST7613_0236 BEST7613_0243 SM00387 Histidine kinase-like ATPases BEST7613_0244 SM00448 cheY-homologous receiver domain BEST7613_0245 SM01130 BEST7613_0245 BEST7613_0248 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BEST7613_0249 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEST7613_0249 SM00895 BEST7613_0249 BEST7613_0250 SM00858 BEST7613_0250 BEST7613_0254 SM00448 cheY-homologous receiver domain BEST7613_0254 SM00862 Transcriptional regulatory protein, C terminal BEST7613_0255 SM00387 Histidine kinase-like ATPases BEST7613_0255 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_0256 SM00382 ATPases associated with a variety of cellular activities BEST7613_0260 SM00327 von Willebrand factor (vWF) type A domain BEST7613_0268 SM00870 BEST7613_0268 BEST7613_0272 SM00387 Histidine kinase-like ATPases BEST7613_0273 SM00448 cheY-homologous receiver domain BEST7613_0273 SM00850 LytTr DNA-binding domain BEST7613_0274 SM00382 ATPases associated with a variety of cellular activities BEST7613_0281 SM00028 Tetratricopeptide repeats BEST7613_0283 SM00642 Alpha-amylase domain BEST7613_0285 SM00382 ATPases associated with a variety of cellular activities BEST7613_0296 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BEST7613_0297 SM00116 Domain in cystathionine beta-synthase and other proteins. BEST7613_0297 SM00382 ATPases associated with a variety of cellular activities BEST7613_0303 SM00632 BEST7613_0303 BEST7613_0303 SM00642 Alpha-amylase domain BEST7613_0307 SM00347 helix_turn_helix multiple antibiotic resistance protein BEST7613_0330 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BEST7613_0335 SM00833 Cobalamin synthesis protein cobW C-terminal domain BEST7613_0337 SM00062 Bacterial periplasmic substrate-binding proteins BEST7613_0344 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BEST7613_0344 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEST7613_0346 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BEST7613_0348 SM00823 Phosphopantetheine attachment site BEST7613_0348 SM01294 BEST7613_0348 BEST7613_0349 SM00823 Phosphopantetheine attachment site BEST7613_0349 SM01294 BEST7613_0349 BEST7613_0350 SM00823 Phosphopantetheine attachment site BEST7613_0355 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEST7613_0359 SM00382 ATPases associated with a variety of cellular activities BEST7613_0361 SM00062 Bacterial periplasmic substrate-binding proteins BEST7613_0369 SM00710 Parallel beta-helix repeats BEST7613_0369 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses BEST7613_0374 SM00382 ATPases associated with a variety of cellular activities BEST7613_0376 SM00448 cheY-homologous receiver domain BEST7613_0376 SM00862 Transcriptional regulatory protein, C terminal BEST7613_0377 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEST7613_0377 SM00387 Histidine kinase-like ATPases BEST7613_0377 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_0378 SM00028 Tetratricopeptide repeats BEST7613_0383 SM00382 ATPases associated with a variety of cellular activities BEST7613_0389 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BEST7613_0390 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEST7613_0397 SM00420 helix_turn_helix, Deoxyribose operon repressor BEST7613_0402 SM01329 BEST7613_0402 BEST7613_0412 SM00796 Allophanate hydrolase subunit 1 BEST7613_0413 SM00797 Allophanate hydrolase subunit 2 BEST7613_0414 SM00346 helix_turn_helix isocitrate lyase regulation BEST7613_0429 SM00344 helix_turn_helix ASNC type BEST7613_0430 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BEST7613_0430 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BEST7613_0430 SM00493 BEST7613_0430 BEST7613_0432 SM00267 diguanylate cyclase BEST7613_0450 SM00091 PAS domain BEST7613_0450 SM00387 Histidine kinase-like ATPases BEST7613_0451 SM00448 cheY-homologous receiver domain BEST7613_0454 SM00382 ATPases associated with a variety of cellular activities BEST7613_0464 SM00487 DEAD-like helicases superfamily BEST7613_0464 SM00490 helicase superfamily c-terminal domain BEST7613_0470 SM01005 Alanine racemase, C-terminal domain BEST7613_0475 SM00387 Histidine kinase-like ATPases BEST7613_0476 SM00331 Sigma factor PP2C-like phosphatases BEST7613_0480 SM00331 Sigma factor PP2C-like phosphatases BEST7613_0480 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BEST7613_0484 SM00347 helix_turn_helix multiple antibiotic resistance protein BEST7613_0485 SM00316 Ribosomal protein S1-like RNA-binding domain BEST7613_0485 SM00732 Likely ribonuclease with RNase H fold. BEST7613_0486 SM00731 SprT homologues. BEST7613_0488 SM00344 helix_turn_helix ASNC type BEST7613_0489 SM00344 helix_turn_helix ASNC type BEST7613_0497 SM00357 Cold shock protein domain BEST7613_0498 SM01058 CarD-like/TRCF domain BEST7613_0500 SM00342 helix_turn_helix, arabinose operon control protein BEST7613_0502 SM00342 helix_turn_helix, arabinose operon control protein BEST7613_0502 SM00871 Bacterial transcription activator, effector binding domain BEST7613_0503 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEST7613_0509 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEST7613_0519 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BEST7613_0523 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEST7613_0525 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BEST7613_0528 SM00387 Histidine kinase-like ATPases BEST7613_0529 SM00421 helix_turn_helix, Lux Regulon BEST7613_0529 SM00448 cheY-homologous receiver domain BEST7613_0533 SM00422 helix_turn_helix, mercury resistance BEST7613_0533 SM00871 Bacterial transcription activator, effector binding domain BEST7613_0549 SM00382 ATPases associated with a variety of cellular activities BEST7613_0552 SM00347 helix_turn_helix multiple antibiotic resistance protein BEST7613_0555 SM00347 helix_turn_helix multiple antibiotic resistance protein BEST7613_0555 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BEST7613_0558 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEST7613_0558 SM00895 BEST7613_0558 BEST7613_0559 SM00257 Lysin motif BEST7613_0559 SM00636 BEST7613_0559 BEST7613_0562 SM00098 Alkaline phosphatase homologues BEST7613_0566 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BEST7613_0573 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEST7613_0573 SM00866 BEST7613_0573 BEST7613_0585 SM00382 ATPases associated with a variety of cellular activities BEST7613_0587 SM00881 CoA binding domain BEST7613_0592 SM00883 Chaperonin 10 Kd subunit BEST7613_0595 SM00028 Tetratricopeptide repeats BEST7613_0595 SM00382 ATPases associated with a variety of cellular activities BEST7613_0596 SM00829 Enoylreductase BEST7613_0607 SM00829 Enoylreductase BEST7613_0617 SM00460 Transglutaminase/protease-like homologues BEST7613_0619 SM01209 BEST7613_0619 BEST7613_0631 SM01001 AIR carboxylase BEST7613_0633 SM00998 Adenylosuccinate lyase C-terminus BEST7613_0636 SM01211 BEST7613_0636 BEST7613_0641 SM00798 AICARFT/IMPCHase bienzyme BEST7613_0641 SM00851 MGS-like domain BEST7613_0642 SM01209 BEST7613_0642 BEST7613_0642 SM01210 BEST7613_0642 BEST7613_0643 SM00344 helix_turn_helix ASNC type BEST7613_0652 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BEST7613_0652 SM00292 breast cancer carboxy-terminal domain BEST7613_0652 SM00532 Ligase N family BEST7613_0659 SM00845 GatB domain BEST7613_0662 SM00046 Diacylglycerol kinase catalytic domain (presumed) BEST7613_0667 SM00487 DEAD-like helicases superfamily BEST7613_0668 SM00974 BEST7613_0668 BEST7613_0674 SM00028 Tetratricopeptide repeats BEST7613_0687 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEST7613_0687 SM00387 Histidine kinase-like ATPases BEST7613_0688 SM00342 helix_turn_helix, arabinose operon control protein BEST7613_0688 SM00448 cheY-homologous receiver domain BEST7613_0693 SM00342 helix_turn_helix, arabinose operon control protein BEST7613_0715 SM00347 helix_turn_helix multiple antibiotic resistance protein BEST7613_0729 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BEST7613_0730 SM00382 ATPases associated with a variety of cellular activities BEST7613_0732 SM00422 helix_turn_helix, mercury resistance BEST7613_0735 SM00382 ATPases associated with a variety of cellular activities BEST7613_0736 SM00487 DEAD-like helicases superfamily BEST7613_0736 SM00490 helicase superfamily c-terminal domain BEST7613_0738 SM00829 Enoylreductase BEST7613_0742 SM00382 ATPases associated with a variety of cellular activities BEST7613_0748 SM00656 BEST7613_0748 BEST7613_0750 SM00387 Histidine kinase-like ATPases BEST7613_0751 SM00448 cheY-homologous receiver domain BEST7613_0754 SM00849 Metallo-beta-lactamase superfamily BEST7613_0771 SM00642 Alpha-amylase domain BEST7613_0772 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEST7613_0772 SM00866 BEST7613_0772 BEST7613_0778 SM00226 Low molecular weight phosphatase family BEST7613_0790 SM00478 endonuclease III BEST7613_0797 SM00861 Transketolase, pyrimidine binding domain BEST7613_0800 SM00382 ATPases associated with a variety of cellular activities BEST7613_0811 SM00382 ATPases associated with a variety of cellular activities BEST7613_0812 SM00382 ATPases associated with a variety of cellular activities BEST7613_0815 SM00342 helix_turn_helix, arabinose operon control protein BEST7613_0819 SM00387 Histidine kinase-like ATPases BEST7613_0820 SM00421 helix_turn_helix, Lux Regulon BEST7613_0820 SM00448 cheY-homologous receiver domain BEST7613_0821 SM00382 ATPases associated with a variety of cellular activities BEST7613_0831 SM00347 helix_turn_helix multiple antibiotic resistance protein BEST7613_0846 SM00287 Bacterial SH3 domain homologues BEST7613_0852 SM00478 endonuclease III BEST7613_0852 SM00525 BEST7613_0852 BEST7613_0858 SM00382 ATPases associated with a variety of cellular activities BEST7613_0872 SM01060 BEST7613_0872 BEST7613_0873 SM00382 ATPases associated with a variety of cellular activities BEST7613_0874 SM00062 Bacterial periplasmic substrate-binding proteins BEST7613_0880 SM00530 Helix-turn-helix XRE-family like proteins BEST7613_0882 SM00567 E-Z type HEAT repeats BEST7613_0888 SM00763 PrkA AAA domain BEST7613_0890 SM00347 helix_turn_helix multiple antibiotic resistance protein BEST7613_0896 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEST7613_0897 SM00382 ATPases associated with a variety of cellular activities BEST7613_0898 SM00382 ATPases associated with a variety of cellular activities BEST7613_0900 SM00357 Cold shock protein domain BEST7613_0902 SM00267 diguanylate cyclase BEST7613_0908 SM00318 Staphylococcal nuclease homologues BEST7613_0910 SM00363 S4 RNA-binding domain BEST7613_0912 SM00116 Domain in cystathionine beta-synthase and other proteins. BEST7613_0922 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEST7613_0922 SM00387 Histidine kinase-like ATPases BEST7613_0923 SM00421 helix_turn_helix, Lux Regulon BEST7613_0923 SM00448 cheY-homologous receiver domain BEST7613_0927 SM00257 Lysin motif BEST7613_0931 SM00098 Alkaline phosphatase homologues BEST7613_0932 SM00257 Lysin motif BEST7613_0938 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEST7613_0944 SM00563 Phosphate acyltransferases BEST7613_0945 SM01091 Transporter associated domain BEST7613_0946 SM00422 helix_turn_helix, mercury resistance BEST7613_0948 SM01091 Transporter associated domain BEST7613_0959 SM00382 ATPases associated with a variety of cellular activities BEST7613_0960 SM00382 ATPases associated with a variety of cellular activities BEST7613_0970 SM00729 Elongator protein 3, MiaB family, Radical SAM BEST7613_0976 SM00382 ATPases associated with a variety of cellular activities BEST7613_0980 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BEST7613_0985 SM00347 helix_turn_helix multiple antibiotic resistance protein BEST7613_0990 SM00382 ATPases associated with a variety of cellular activities BEST7613_1006 SM01022 BEST7613_1006 BEST7613_1008 SM00849 Metallo-beta-lactamase superfamily BEST7613_1016 SM00829 Enoylreductase BEST7613_1018 SM00855 Phosphoglycerate mutase family BEST7613_1022 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BEST7613_1025 SM00914 BEST7613_1025 BEST7613_1028 SM00894 Excalibur calcium-binding domain BEST7613_1035 SM00347 helix_turn_helix multiple antibiotic resistance protein BEST7613_1041 SM00354 helix_turn _helix lactose operon repressor BEST7613_1068 SM00342 helix_turn_helix, arabinose operon control protein BEST7613_1069 SM00354 helix_turn _helix lactose operon repressor BEST7613_1073 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEST7613_1082 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BEST7613_1088 SM00316 Ribosomal protein S1-like RNA-binding domain BEST7613_1091 SM00752 Horizontally Transferred TransMembrane Domain BEST7613_1107 SM00859 Semialdehyde dehydrogenase, NAD binding domain BEST7613_1111 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BEST7613_1112 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BEST7613_1122 SM00825 Beta-ketoacyl synthase BEST7613_1124 SM00382 ATPases associated with a variety of cellular activities BEST7613_1125 SM00382 ATPases associated with a variety of cellular activities BEST7613_1135 SM00382 ATPases associated with a variety of cellular activities BEST7613_1136 SM00382 ATPases associated with a variety of cellular activities BEST7613_1148 SM01118 BEST7613_1148 BEST7613_1150 SM00954 Region found in RelA / SpoT proteins BEST7613_1193 SM00635 Bacterial Ig-like domain 2 BEST7613_1212 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BEST7613_1212 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BEST7613_1222 SM00382 ATPases associated with a variety of cellular activities BEST7613_1224 SM00835 Cupin BEST7613_1230 SM00829 Enoylreductase BEST7613_1234 SM00354 helix_turn _helix lactose operon repressor BEST7613_1236 SM00858 BEST7613_1236 BEST7613_1239 SM00382 ATPases associated with a variety of cellular activities BEST7613_1240 SM00028 Tetratricopeptide repeats BEST7613_1243 SM00257 Lysin motif BEST7613_1243 SM00644 BEST7613_1243 BEST7613_1248 SM00530 Helix-turn-helix XRE-family like proteins BEST7613_1251 SM00382 ATPases associated with a variety of cellular activities BEST7613_1271 SM00257 Lysin motif BEST7613_1284 SM00257 Lysin motif BEST7613_1284 SM00644 BEST7613_1284 BEST7613_1295 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BEST7613_1300 SM00382 ATPases associated with a variety of cellular activities BEST7613_1303 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BEST7613_1305 SM00382 ATPases associated with a variety of cellular activities BEST7613_1327 SM00798 AICARFT/IMPCHase bienzyme BEST7613_1327 SM00851 MGS-like domain BEST7613_1331 SM00220 Serine/Threonine protein kinases, catalytic domain BEST7613_1336 SM00306 Hint (Hedgehog/Intein) domain N-terminal region BEST7613_1336 SM00481 DNA polymerase alpha chain like domain BEST7613_1338 SM00838 Elongation factor G C-terminus BEST7613_1341 SM00100 Cyclic nucleotide-monophosphate binding domain BEST7613_1343 SM00833 Cobalamin synthesis protein cobW C-terminal domain BEST7613_1354 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BEST7613_1354 SM00292 breast cancer carboxy-terminal domain BEST7613_1354 SM00532 Ligase N family BEST7613_1358 SM00382 ATPases associated with a variety of cellular activities BEST7613_1361 SM00342 helix_turn_helix, arabinose operon control protein BEST7613_1366 SM00342 helix_turn_helix, arabinose operon control protein BEST7613_1373 SM00698 Possible plasma membrane-binding motif in junctophilins, PIP-5-kinases and protein kinases. BEST7613_1374 SM00382 ATPases associated with a variety of cellular activities BEST7613_1375 SM00342 helix_turn_helix, arabinose operon control protein BEST7613_1381 SM00382 ATPases associated with a variety of cellular activities BEST7613_1396 SM00382 ATPases associated with a variety of cellular activities BEST7613_1420 SM00072 Guanylate kinase homologues. BEST7613_1421 SM00855 Phosphoglycerate mutase family BEST7613_1425 SM00460 Transglutaminase/protease-like homologues BEST7613_1427 SM00244 prohibitin homologues BEST7613_1428 SM00316 Ribosomal protein S1-like RNA-binding domain BEST7613_1431 SM00316 Ribosomal protein S1-like RNA-binding domain BEST7613_1431 SM00322 K homology RNA-binding domain BEST7613_1433 SM00919 Malic enzyme, NAD binding domain BEST7613_1433 SM01274 BEST7613_1433 BEST7613_1438 SM00650 Ribosomal RNA adenine dimethylases BEST7613_1439 SM00046 Diacylglycerol kinase catalytic domain (presumed) BEST7613_1458 SM00091 PAS domain BEST7613_1458 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEST7613_1458 SM00387 Histidine kinase-like ATPases BEST7613_1458 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_1466 SM00322 K homology RNA-binding domain BEST7613_1470 SM00642 Alpha-amylase domain BEST7613_1486 SM00062 Bacterial periplasmic substrate-binding proteins BEST7613_1490 SM00382 ATPases associated with a variety of cellular activities BEST7613_1501 SM00849 Metallo-beta-lactamase superfamily BEST7613_1501 SM00903 Flavin reductase like domain BEST7613_1503 SM00849 Metallo-beta-lactamase superfamily BEST7613_1503 SM00903 Flavin reductase like domain BEST7613_1505 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BEST7613_1505 SM00245 tail specific protease BEST7613_1517 SM00387 Histidine kinase-like ATPases BEST7613_1519 SM00382 ATPases associated with a variety of cellular activities BEST7613_1523 SM00382 ATPases associated with a variety of cellular activities BEST7613_1531 SM00567 E-Z type HEAT repeats BEST7613_1535 SM00052 Putative diguanylate phosphodiesterase BEST7613_1535 SM00091 PAS domain BEST7613_1535 SM00240 Forkhead associated domain BEST7613_1535 SM00267 diguanylate cyclase BEST7613_1536 SM00052 Putative diguanylate phosphodiesterase BEST7613_1536 SM00240 Forkhead associated domain BEST7613_1536 SM00267 diguanylate cyclase BEST7613_1537 SM00052 Putative diguanylate phosphodiesterase BEST7613_1537 SM00240 Forkhead associated domain BEST7613_1537 SM00267 diguanylate cyclase BEST7613_1544 SM00244 prohibitin homologues BEST7613_1546 SM00331 Sigma factor PP2C-like phosphatases BEST7613_1546 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BEST7613_1548 SM00961 Ribulose bisphosphate carboxylase, small chain BEST7613_1550 SM00877 BEST7613_1550 BEST7613_1551 SM00877 BEST7613_1551 BEST7613_1553 SM00248 ankyrin repeats BEST7613_1562 SM00327 von Willebrand factor (vWF) type A domain BEST7613_1562 SM00382 ATPases associated with a variety of cellular activities BEST7613_1566 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BEST7613_1566 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BEST7613_1569 SM00460 Transglutaminase/protease-like homologues BEST7613_1571 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BEST7613_1572 SM00421 helix_turn_helix, Lux Regulon BEST7613_1572 SM00448 cheY-homologous receiver domain BEST7613_1581 SM00267 diguanylate cyclase BEST7613_1581 SM00448 cheY-homologous receiver domain BEST7613_1582 SM00387 Histidine kinase-like ATPases BEST7613_1582 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_1582 SM00448 cheY-homologous receiver domain BEST7613_1593 SM00028 Tetratricopeptide repeats BEST7613_1594 SM00271 DnaJ molecular chaperone homology domain BEST7613_1598 SM00567 E-Z type HEAT repeats BEST7613_1600 SM00267 diguanylate cyclase BEST7613_1602 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BEST7613_1614 SM01329 BEST7613_1614 BEST7613_1627 SM00507 HNH nucleases BEST7613_1629 SM00984 UDP binding domain BEST7613_1638 SM00052 Putative diguanylate phosphodiesterase BEST7613_1638 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BEST7613_1638 SM00091 PAS domain BEST7613_1638 SM00267 diguanylate cyclase BEST7613_1638 SM00448 cheY-homologous receiver domain BEST7613_1651 SM00480 DNA polymerase III beta subunit BEST7613_1662 SM01387 BEST7613_1662 BEST7613_1680 SM00382 ATPases associated with a variety of cellular activities BEST7613_1731 SM00849 Metallo-beta-lactamase superfamily BEST7613_1734 SM00387 Histidine kinase-like ATPases BEST7613_1734 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_1734 SM00448 cheY-homologous receiver domain BEST7613_1736 SM00237 Domains in Na-Ca exchangers and integrin-beta4 BEST7613_1747 SM00448 cheY-homologous receiver domain BEST7613_1747 SM00862 Transcriptional regulatory protein, C terminal BEST7613_1749 SM00849 Metallo-beta-lactamase superfamily BEST7613_1750 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain BEST7613_1750 SM01080 BEST7613_1750 BEST7613_1755 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEST7613_1755 SM00267 diguanylate cyclase BEST7613_1755 SM00448 cheY-homologous receiver domain BEST7613_1764 SM00382 ATPases associated with a variety of cellular activities BEST7613_1764 SM00393 Putative single-stranded nucleic acids-binding domain BEST7613_1770 SM00363 S4 RNA-binding domain BEST7613_1771 SM00052 Putative diguanylate phosphodiesterase BEST7613_1772 SM00448 cheY-homologous receiver domain BEST7613_1781 SM00729 Elongator protein 3, MiaB family, Radical SAM BEST7613_1792 SM00382 ATPases associated with a variety of cellular activities BEST7613_1809 SM00448 cheY-homologous receiver domain BEST7613_1810 SM00448 cheY-homologous receiver domain BEST7613_1811 SM00260 Two component signalling adaptor domain BEST7613_1812 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BEST7613_1812 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEST7613_1815 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEST7613_1815 SM00267 diguanylate cyclase BEST7613_1817 SM00271 DnaJ molecular chaperone homology domain BEST7613_1829 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BEST7613_1829 SM00091 PAS domain BEST7613_1829 SM00387 Histidine kinase-like ATPases BEST7613_1829 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_1834 SM00382 ATPases associated with a variety of cellular activities BEST7613_1836 SM00912 haemagglutination activity domain BEST7613_1839 SM01230 BEST7613_1839 BEST7613_1840 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEST7613_1840 SM00073 Histidine Phosphotransfer domain BEST7613_1840 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BEST7613_1840 SM00091 PAS domain BEST7613_1840 SM00387 Histidine kinase-like ATPases BEST7613_1840 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_1840 SM00448 cheY-homologous receiver domain BEST7613_1840 SM01079 BEST7613_1840 BEST7613_1841 SM00267 diguanylate cyclase BEST7613_1841 SM00448 cheY-homologous receiver domain BEST7613_1854 SM00244 prohibitin homologues BEST7613_1857 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BEST7613_1860 SM00563 Phosphate acyltransferases BEST7613_1874 SM00861 Transketolase, pyrimidine binding domain BEST7613_1881 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BEST7613_1888 SM00434 DNA Topoisomerase IV BEST7613_1889 SM00448 cheY-homologous receiver domain BEST7613_1897 SM00382 ATPases associated with a variety of cellular activities BEST7613_1900 SM00112 Cadherin repeats. BEST7613_1902 SM00028 Tetratricopeptide repeats BEST7613_1908 SM00271 DnaJ molecular chaperone homology domain BEST7613_1917 SM00421 helix_turn_helix, Lux Regulon BEST7613_1917 SM00448 cheY-homologous receiver domain BEST7613_1918 SM00646 BEST7613_1918 BEST7613_1940 SM00729 Elongator protein 3, MiaB family, Radical SAM BEST7613_1952 SM00829 Enoylreductase BEST7613_1953 SM00108 Bulb-type mannose-specific lectin BEST7613_1953 SM00191 Integrin alpha (beta-propellor repeats). BEST7613_1953 SM00237 Domains in Na-Ca exchangers and integrin-beta4 BEST7613_1953 SM00560 LamG-like jellyroll fold domain BEST7613_1954 SM00382 ATPases associated with a variety of cellular activities BEST7613_1964 SM00448 cheY-homologous receiver domain BEST7613_1982 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEST7613_1982 SM00091 PAS domain BEST7613_1986 SM00073 Histidine Phosphotransfer domain BEST7613_1986 SM00260 Two component signalling adaptor domain BEST7613_1986 SM00387 Histidine kinase-like ATPases BEST7613_1986 SM00448 cheY-homologous receiver domain BEST7613_1986 SM01231 BEST7613_1986 BEST7613_1987 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BEST7613_1987 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEST7613_1988 SM00260 Two component signalling adaptor domain BEST7613_1989 SM00448 cheY-homologous receiver domain BEST7613_1990 SM00448 cheY-homologous receiver domain BEST7613_1991 SM00955 BEST7613_1991 BEST7613_1993 SM00382 ATPases associated with a variety of cellular activities BEST7613_1995 SM00899 BEST7613_1995 BEST7613_1998 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEST7613_1998 SM00091 PAS domain BEST7613_1998 SM00387 Histidine kinase-like ATPases BEST7613_1998 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_2006 SM00729 Elongator protein 3, MiaB family, Radical SAM BEST7613_2011 SM00292 breast cancer carboxy-terminal domain BEST7613_2017 SM01094 CpcD/allophycocyanin linker domain BEST7613_2018 SM01094 CpcD/allophycocyanin linker domain BEST7613_2019 SM01094 CpcD/allophycocyanin linker domain BEST7613_2025 SM00220 Serine/Threonine protein kinases, catalytic domain BEST7613_2035 SM00240 Forkhead associated domain BEST7613_2037 SM00382 ATPases associated with a variety of cellular activities BEST7613_2050 SM00327 von Willebrand factor (vWF) type A domain BEST7613_2051 SM00100 Cyclic nucleotide-monophosphate binding domain BEST7613_2051 SM00419 helix_turn_helix, cAMP Regulatory protein BEST7613_2056 SM00382 ATPases associated with a variety of cellular activities BEST7613_2059 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BEST7613_2060 SM00448 cheY-homologous receiver domain BEST7613_2062 SM00729 Elongator protein 3, MiaB family, Radical SAM BEST7613_2068 SM00670 Large family of predicted nucleotide-binding domains BEST7613_2071 SM00316 Ribosomal protein S1-like RNA-binding domain BEST7613_2071 SM00357 Cold shock protein domain BEST7613_2071 SM00955 BEST7613_2071 BEST7613_2073 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEST7613_2073 SM00331 Sigma factor PP2C-like phosphatases BEST7613_2078 SM00729 Elongator protein 3, MiaB family, Radical SAM BEST7613_2084 SM00382 ATPases associated with a variety of cellular activities BEST7613_2090 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEST7613_2091 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEST7613_2091 SM00267 diguanylate cyclase BEST7613_2092 SM00831 Cation transporter/ATPase, N-terminus BEST7613_2097 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEST7613_2097 SM00387 Histidine kinase-like ATPases BEST7613_2097 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_2099 SM00382 ATPases associated with a variety of cellular activities BEST7613_2103 SM00861 Transketolase, pyrimidine binding domain BEST7613_2104 SM00825 Beta-ketoacyl synthase BEST7613_2111 SM00788 Adenylosuccinate synthetase BEST7613_2118 SM00662 RNA polymerases D BEST7613_2122 SM00316 Ribosomal protein S1-like RNA-binding domain BEST7613_2131 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BEST7613_2132 SM01374 BEST7613_2132 BEST7613_2136 SM00322 K homology RNA-binding domain BEST7613_2139 SM01382 BEST7613_2139 BEST7613_2139 SM01383 BEST7613_2139 BEST7613_2152 SM00382 ATPases associated with a variety of cellular activities BEST7613_2161 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEST7613_2161 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BEST7613_2161 SM00091 PAS domain BEST7613_2161 SM00387 Histidine kinase-like ATPases BEST7613_2161 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_2164 SM00968 SMC proteins Flexible Hinge Domain BEST7613_2169 SM00028 Tetratricopeptide repeats BEST7613_2174 SM00853 MutL C terminal dimerisation domain BEST7613_2174 SM01340 BEST7613_2174 BEST7613_2179 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BEST7613_2184 SM01007 Class II Aldolase and Adducin N-terminal domain BEST7613_2188 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEST7613_2188 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BEST7613_2188 SM00091 PAS domain BEST7613_2188 SM00387 Histidine kinase-like ATPases BEST7613_2189 SM00342 helix_turn_helix, arabinose operon control protein BEST7613_2189 SM00448 cheY-homologous receiver domain BEST7613_2190 SM00448 cheY-homologous receiver domain BEST7613_2194 SM00116 Domain in cystathionine beta-synthase and other proteins. BEST7613_2194 SM00924 MgtE intracellular N domain BEST7613_2207 SM00883 Chaperonin 10 Kd subunit BEST7613_2209 SM00052 Putative diguanylate phosphodiesterase BEST7613_2209 SM00062 Bacterial periplasmic substrate-binding proteins BEST7613_2209 SM00267 diguanylate cyclase BEST7613_2216 SM00649 Ribosomal protein L11/L12 BEST7613_2217 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BEST7613_2217 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BEST7613_2229 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. BEST7613_2237 SM00382 ATPases associated with a variety of cellular activities BEST7613_2241 SM00448 cheY-homologous receiver domain BEST7613_2241 SM00862 Transcriptional regulatory protein, C terminal BEST7613_2242 SM00861 Transketolase, pyrimidine binding domain BEST7613_2243 SM00877 BEST7613_2243 BEST7613_2244 SM00877 BEST7613_2244 BEST7613_2256 SM00411 bacterial (prokaryotic) histone like domain BEST7613_2259 SM00490 helicase superfamily c-terminal domain BEST7613_2276 SM00382 ATPases associated with a variety of cellular activities BEST7613_2290 SM00382 ATPases associated with a variety of cellular activities BEST7613_2291 SM00382 ATPases associated with a variety of cellular activities BEST7613_2295 SM00855 Phosphoglycerate mutase family BEST7613_2297 SM00864 Tubulin/FtsZ family, GTPase domain BEST7613_2297 SM00865 Tubulin/FtsZ family, C-terminal domain BEST7613_2299 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BEST7613_2299 SM00245 tail specific protease BEST7613_2303 SM00988 UreE urease accessory protein, N-terminal domain BEST7613_2312 SM00382 ATPases associated with a variety of cellular activities BEST7613_2313 SM00220 Serine/Threonine protein kinases, catalytic domain BEST7613_2341 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BEST7613_2341 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BEST7613_2353 SM00305 Hint (Hedgehog/Intein) domain C-terminal region BEST7613_2358 SM00835 Cupin BEST7613_2364 SM00220 Serine/Threonine protein kinases, catalytic domain BEST7613_2365 SM00880 BEST7613_2365 BEST7613_2368 SM00387 Histidine kinase-like ATPases BEST7613_2368 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_2379 SM00316 Ribosomal protein S1-like RNA-binding domain BEST7613_2382 SM00382 ATPases associated with a variety of cellular activities BEST7613_2387 SM00729 Elongator protein 3, MiaB family, Radical SAM BEST7613_2387 SM00876 Biotin and Thiamin Synthesis associated domain BEST7613_2394 SM00062 Bacterial periplasmic substrate-binding proteins BEST7613_2394 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BEST7613_2404 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BEST7613_2407 SM00360 RNA recognition motif BEST7613_2409 SM00257 Lysin motif BEST7613_2420 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BEST7613_2425 SM00822 BEST7613_2425 BEST7613_2432 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BEST7613_2432 SM00465 GIY-YIG type nucleases (URI domain) BEST7613_2433 SM00287 Bacterial SH3 domain homologues BEST7613_2433 SM00646 BEST7613_2433 BEST7613_2434 SM00232 JAB/MPN domain BEST7613_2446 SM00191 Integrin alpha (beta-propellor repeats). BEST7613_2446 SM00237 Domains in Na-Ca exchangers and integrin-beta4 BEST7613_2450 SM00320 WD40 repeats BEST7613_2451 SM00320 WD40 repeats BEST7613_2465 SM00642 Alpha-amylase domain BEST7613_2467 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEST7613_2467 SM00331 Sigma factor PP2C-like phosphatases BEST7613_2476 SM01133 BEST7613_2476 BEST7613_2483 SM00704 CDGSH-type zinc finger. Function unknown. BEST7613_2486 SM00463 Small MutS-related domain BEST7613_2486 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BEST7613_2486 SM00534 ATPase domain of DNA mismatch repair MUTS family BEST7613_2487 SM00331 Sigma factor PP2C-like phosphatases BEST7613_2487 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BEST7613_2501 SM00567 E-Z type HEAT repeats BEST7613_2506 SM00062 Bacterial periplasmic substrate-binding proteins BEST7613_2513 SM00382 ATPases associated with a variety of cellular activities BEST7613_2514 SM00904 Riboflavin kinase BEST7613_2517 SM01093 BEST7613_2517 BEST7613_2520 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BEST7613_2538 SM00507 HNH nucleases BEST7613_2540 SM00305 Hint (Hedgehog/Intein) domain C-terminal region BEST7613_2540 SM00306 Hint (Hedgehog/Intein) domain N-terminal region BEST7613_2540 SM00387 Histidine kinase-like ATPases BEST7613_2540 SM00433 TopoisomeraseII BEST7613_2552 SM00421 helix_turn_helix, Lux Regulon BEST7613_2552 SM00448 cheY-homologous receiver domain BEST7613_2553 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEST7613_2553 SM00387 Histidine kinase-like ATPases BEST7613_2553 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_2580 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEST7613_2580 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BEST7613_2580 SM00091 PAS domain BEST7613_2580 SM00267 diguanylate cyclase BEST7613_2581 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BEST7613_2582 SM00478 endonuclease III BEST7613_2582 SM00525 BEST7613_2582 BEST7613_2588 SM00028 Tetratricopeptide repeats BEST7613_2590 SM00382 ATPases associated with a variety of cellular activities BEST7613_2593 SM00448 cheY-homologous receiver domain BEST7613_2593 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BEST7613_2594 SM00382 ATPases associated with a variety of cellular activities BEST7613_2605 SM00646 BEST7613_2605 BEST7613_2622 SM00382 ATPases associated with a variety of cellular activities BEST7613_2622 SM00760 Bacterial dnaA protein helix-turn-helix domain BEST7613_2630 SM00642 Alpha-amylase domain BEST7613_2631 SM00382 ATPases associated with a variety of cellular activities BEST7613_2634 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BEST7613_2635 SM00028 Tetratricopeptide repeats BEST7613_2643 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BEST7613_2643 SM00534 ATPase domain of DNA mismatch repair MUTS family BEST7613_2648 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain BEST7613_2662 SM00382 ATPases associated with a variety of cellular activities BEST7613_2673 SM00062 Bacterial periplasmic substrate-binding proteins BEST7613_2673 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BEST7613_2675 SM00849 Metallo-beta-lactamase superfamily BEST7613_2677 SM00450 Rhodanese Homology Domain BEST7613_2680 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEST7613_2684 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BEST7613_2686 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BEST7613_2686 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BEST7613_2686 SM00493 BEST7613_2686 BEST7613_2687 SM00930 BEST7613_2687 BEST7613_2688 SM00563 Phosphate acyltransferases BEST7613_2698 SM01094 CpcD/allophycocyanin linker domain BEST7613_2702 SM00044 Adenylyl- / guanylyl cyclase, catalytic domain BEST7613_2702 SM00240 Forkhead associated domain BEST7613_2705 SM00822 BEST7613_2705 BEST7613_2707 SM00073 Histidine Phosphotransfer domain BEST7613_2707 SM00091 PAS domain BEST7613_2707 SM00387 Histidine kinase-like ATPases BEST7613_2707 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_2707 SM00448 cheY-homologous receiver domain BEST7613_2720 SM00831 Cation transporter/ATPase, N-terminus BEST7613_2727 SM00460 Transglutaminase/protease-like homologues BEST7613_2736 SM01240 BEST7613_2736 BEST7613_2742 SM00382 ATPases associated with a variety of cellular activities BEST7613_2745 SM01248 BEST7613_2745 BEST7613_2746 SM00382 ATPases associated with a variety of cellular activities BEST7613_2750 SM00421 helix_turn_helix, Lux Regulon BEST7613_2750 SM00448 cheY-homologous receiver domain BEST7613_2751 SM00387 Histidine kinase-like ATPases BEST7613_2751 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_2787 SM00382 ATPases associated with a variety of cellular activities BEST7613_2791 SM00631 BEST7613_2791 BEST7613_2794 SM00507 HNH nucleases BEST7613_2817 SM00073 Histidine Phosphotransfer domain BEST7613_2817 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BEST7613_2817 SM00091 PAS domain BEST7613_2817 SM00387 Histidine kinase-like ATPases BEST7613_2817 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_2817 SM00448 cheY-homologous receiver domain BEST7613_2818 SM00387 Histidine kinase-like ATPases BEST7613_2818 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_2818 SM00448 cheY-homologous receiver domain BEST7613_2819 SM00448 cheY-homologous receiver domain BEST7613_2819 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BEST7613_2821 SM00382 ATPases associated with a variety of cellular activities BEST7613_2821 SM00962 SRP54-type protein, GTPase domain BEST7613_2821 SM00963 SRP54-type protein, helical bundle domain BEST7613_2823 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEST7613_2823 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BEST7613_2823 SM00091 PAS domain BEST7613_2823 SM00387 Histidine kinase-like ATPases BEST7613_2823 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_2823 SM00448 cheY-homologous receiver domain BEST7613_2824 SM01207 BEST7613_2824 BEST7613_2831 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BEST7613_2837 SM00100 Cyclic nucleotide-monophosphate binding domain BEST7613_2837 SM00419 helix_turn_helix, cAMP Regulatory protein BEST7613_2856 SM01329 BEST7613_2856 BEST7613_2884 SM01004 Delta-aminolevulinic acid dehydratase BEST7613_2895 SM00387 Histidine kinase-like ATPases BEST7613_2895 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_2895 SM00448 cheY-homologous receiver domain BEST7613_2898 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BEST7613_2898 SM00954 Region found in RelA / SpoT proteins BEST7613_2899 SM00996 S-adenosyl-L-homocysteine hydrolase BEST7613_2899 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BEST7613_2901 SM00670 Large family of predicted nucleotide-binding domains BEST7613_2902 SM00460 Transglutaminase/protease-like homologues BEST7613_2905 SM00387 Histidine kinase-like ATPases BEST7613_2905 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_2905 SM00448 cheY-homologous receiver domain BEST7613_2906 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEST7613_2906 SM00387 Histidine kinase-like ATPases BEST7613_2906 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_2906 SM00448 cheY-homologous receiver domain BEST7613_2907 SM00382 ATPases associated with a variety of cellular activities BEST7613_2910 SM00825 Beta-ketoacyl synthase BEST7613_2915 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BEST7613_2917 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BEST7613_2937 SM00244 prohibitin homologues BEST7613_2957 SM00831 Cation transporter/ATPase, N-terminus BEST7613_2958 SM00028 Tetratricopeptide repeats BEST7613_2971 SM00327 von Willebrand factor (vWF) type A domain BEST7613_2979 SM00116 Domain in cystathionine beta-synthase and other proteins. BEST7613_2980 SM00363 S4 RNA-binding domain BEST7613_2982 SM00028 Tetratricopeptide repeats BEST7613_2986 SM00947 Carbonic anhydrase BEST7613_2995 SM00729 Elongator protein 3, MiaB family, Radical SAM BEST7613_2996 SM00028 Tetratricopeptide repeats BEST7613_3004 SM00479 BEST7613_3004 BEST7613_3009 SM00052 Putative diguanylate phosphodiesterase BEST7613_3015 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BEST7613_3018 SM00347 helix_turn_helix multiple antibiotic resistance protein BEST7613_3026 SM00382 ATPases associated with a variety of cellular activities BEST7613_3029 SM00448 cheY-homologous receiver domain BEST7613_3029 SM00862 Transcriptional regulatory protein, C terminal BEST7613_3030 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEST7613_3030 SM00387 Histidine kinase-like ATPases BEST7613_3030 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_3035 SM00116 Domain in cystathionine beta-synthase and other proteins. BEST7613_3035 SM00924 MgtE intracellular N domain BEST7613_3036 SM00422 helix_turn_helix, mercury resistance BEST7613_3039 SM00347 helix_turn_helix multiple antibiotic resistance protein BEST7613_3046 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen BEST7613_3047 SM00052 Putative diguanylate phosphodiesterase BEST7613_3047 SM00267 diguanylate cyclase BEST7613_3059 SM00091 PAS domain BEST7613_3059 SM00387 Histidine kinase-like ATPases BEST7613_3059 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_3068 SM01007 Class II Aldolase and Adducin N-terminal domain BEST7613_3073 SM00387 Histidine kinase-like ATPases BEST7613_3073 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_3074 SM00347 helix_turn_helix multiple antibiotic resistance protein BEST7613_3077 SM00382 ATPases associated with a variety of cellular activities BEST7613_3077 SM01086 C-terminal, D2-small domain, of ClpB protein BEST7613_3084 SM00822 BEST7613_3084 BEST7613_3085 SM00257 Lysin motif BEST7613_3086 SM00257 Lysin motif BEST7613_3087 SM00636 BEST7613_3087 BEST7613_3099 SM00354 helix_turn _helix lactose operon repressor BEST7613_3100 SM01061 CAT RNA binding domain BEST7613_3107 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BEST7613_3107 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEST7613_3111 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BEST7613_3111 SM00091 PAS domain BEST7613_3111 SM00387 Histidine kinase-like ATPases BEST7613_3111 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_3114 SM00260 Two component signalling adaptor domain BEST7613_3114 SM00448 cheY-homologous receiver domain BEST7613_3117 SM00257 Lysin motif BEST7613_3123 SM00052 Putative diguanylate phosphodiesterase BEST7613_3142 SM00852 Probable molybdopterin binding domain BEST7613_3146 SM00382 ATPases associated with a variety of cellular activities BEST7613_3147 SM00382 ATPases associated with a variety of cellular activities BEST7613_3150 SM00382 ATPases associated with a variety of cellular activities BEST7613_3151 SM01066 Carbohydrate binding domain BEST7613_3152 SM00420 helix_turn_helix, Deoxyribose operon repressor BEST7613_3152 SM01134 BEST7613_3152 BEST7613_3157 SM00382 ATPases associated with a variety of cellular activities BEST7613_3162 SM00966 SpoVT / AbrB like domain BEST7613_3163 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BEST7613_3163 SM00091 PAS domain BEST7613_3163 SM00387 Histidine kinase-like ATPases BEST7613_3163 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_3167 SM00849 Metallo-beta-lactamase superfamily BEST7613_3174 SM00861 Transketolase, pyrimidine binding domain BEST7613_3192 SM00838 Elongation factor G C-terminus BEST7613_3196 SM00670 Large family of predicted nucleotide-binding domains BEST7613_3201 SM00878 Biotin carboxylase C-terminal domain BEST7613_3210 SM00116 Domain in cystathionine beta-synthase and other proteins. BEST7613_3221 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BEST7613_3232 SM00740 BEST7613_3232 BEST7613_3233 SM00740 BEST7613_3233 BEST7613_3244 SM00842 Cell division protein FtsA BEST7613_3245 SM00864 Tubulin/FtsZ family, GTPase domain BEST7613_3245 SM00865 Tubulin/FtsZ family, C-terminal domain BEST7613_3250 SM00382 ATPases associated with a variety of cellular activities BEST7613_3257 SM00363 S4 RNA-binding domain BEST7613_3262 SM00363 S4 RNA-binding domain BEST7613_3267 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BEST7613_3268 SM00851 MGS-like domain BEST7613_3268 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BEST7613_3268 SM01209 BEST7613_3268 BEST7613_3271 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BEST7613_3281 SM00831 Cation transporter/ATPase, N-terminus BEST7613_3284 SM00072 Guanylate kinase homologues. BEST7613_3285 SM01409 BEST7613_3285 BEST7613_3287 SM00487 DEAD-like helicases superfamily BEST7613_3287 SM00490 helicase superfamily c-terminal domain BEST7613_3292 SM00331 Sigma factor PP2C-like phosphatases BEST7613_3292 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BEST7613_3293 SM00220 Serine/Threonine protein kinases, catalytic domain BEST7613_3293 SM00740 BEST7613_3293 BEST7613_3296 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain BEST7613_3299 SM01120 BEST7613_3299 BEST7613_3299 SM01121 BEST7613_3299 BEST7613_3302 SM00487 DEAD-like helicases superfamily BEST7613_3302 SM00490 helicase superfamily c-terminal domain BEST7613_3305 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BEST7613_3306 SM00822 BEST7613_3306 BEST7613_3308 SM00358 Double-stranded RNA binding motif BEST7613_3308 SM00535 Ribonuclease III family BEST7613_3309 SM00968 SMC proteins Flexible Hinge Domain BEST7613_3310 SM00382 ATPases associated with a variety of cellular activities BEST7613_3310 SM00962 SRP54-type protein, GTPase domain BEST7613_3310 SM00963 SRP54-type protein, helical bundle domain BEST7613_3313 SM00382 ATPases associated with a variety of cellular activities BEST7613_3313 SM00962 SRP54-type protein, GTPase domain BEST7613_3313 SM00963 SRP54-type protein, helical bundle domain BEST7613_3325 SM00881 CoA binding domain BEST7613_3327 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BEST7613_3327 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BEST7613_3327 SM00493 BEST7613_3327 BEST7613_3331 SM00382 ATPases associated with a variety of cellular activities BEST7613_3331 SM01086 C-terminal, D2-small domain, of ClpB protein BEST7613_3339 SM00382 ATPases associated with a variety of cellular activities BEST7613_3349 SM00448 cheY-homologous receiver domain BEST7613_3356 SM00962 SRP54-type protein, GTPase domain BEST7613_3358 SM00448 cheY-homologous receiver domain BEST7613_3359 SM00073 Histidine Phosphotransfer domain BEST7613_3359 SM00260 Two component signalling adaptor domain BEST7613_3359 SM00387 Histidine kinase-like ATPases BEST7613_3359 SM01231 BEST7613_3359 BEST7613_3360 SM00260 Two component signalling adaptor domain BEST7613_3372 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BEST7613_3374 SM00479 BEST7613_3374 BEST7613_3374 SM00481 DNA polymerase alpha chain like domain BEST7613_3376 SM00316 Ribosomal protein S1-like RNA-binding domain BEST7613_3376 SM00322 K homology RNA-binding domain BEST7613_3383 SM00904 Riboflavin kinase BEST7613_3384 SM01387 BEST7613_3384 BEST7613_3385 SM00316 Ribosomal protein S1-like RNA-binding domain BEST7613_3385 SM00322 K homology RNA-binding domain BEST7613_3391 SM00859 Semialdehyde dehydrogenase, NAD binding domain BEST7613_3393 SM01130 BEST7613_3393 BEST7613_3394 SM00849 Metallo-beta-lactamase superfamily BEST7613_3397 SM00382 ATPases associated with a variety of cellular activities BEST7613_3397 SM00843 BEST7613_3397 BEST7613_3398 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEST7613_3398 SM00866 BEST7613_3398 BEST7613_3406 SM00530 Helix-turn-helix XRE-family like proteins BEST7613_3408 SM00852 Probable molybdopterin binding domain BEST7613_3409 SM00382 ATPases associated with a variety of cellular activities BEST7613_3411 SM00322 K homology RNA-binding domain BEST7613_3411 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BEST7613_3414 SM00829 Enoylreductase BEST7613_3416 SM00729 Elongator protein 3, MiaB family, Radical SAM BEST7613_3419 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BEST7613_3419 SM00534 ATPase domain of DNA mismatch repair MUTS family BEST7613_3420 SM00853 MutL C terminal dimerisation domain BEST7613_3420 SM01340 BEST7613_3420 BEST7613_3424 SM00849 Metallo-beta-lactamase superfamily BEST7613_3425 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BEST7613_3426 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BEST7613_3427 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BEST7613_3429 SM00825 Beta-ketoacyl synthase BEST7613_3433 SM00822 BEST7613_3433 BEST7613_3433 SM00823 Phosphopantetheine attachment site BEST7613_3433 SM00825 Beta-ketoacyl synthase BEST7613_3433 SM00826 BEST7613_3433 BEST7613_3433 SM01294 BEST7613_3433 BEST7613_3434 SM00822 BEST7613_3434 BEST7613_3434 SM00823 Phosphopantetheine attachment site BEST7613_3434 SM00825 Beta-ketoacyl synthase BEST7613_3434 SM00826 BEST7613_3434 BEST7613_3434 SM01294 BEST7613_3434 BEST7613_3435 SM00822 BEST7613_3435 BEST7613_3435 SM00823 Phosphopantetheine attachment site BEST7613_3435 SM00825 Beta-ketoacyl synthase BEST7613_3435 SM00826 BEST7613_3435 BEST7613_3435 SM01294 BEST7613_3435 BEST7613_3436 SM00823 Phosphopantetheine attachment site BEST7613_3436 SM00825 Beta-ketoacyl synthase BEST7613_3436 SM00826 BEST7613_3436 BEST7613_3437 SM00822 BEST7613_3437 BEST7613_3437 SM00823 Phosphopantetheine attachment site BEST7613_3437 SM00825 Beta-ketoacyl synthase BEST7613_3437 SM00826 BEST7613_3437 BEST7613_3437 SM01294 BEST7613_3437 BEST7613_3438 SM00823 Phosphopantetheine attachment site BEST7613_3438 SM00825 Beta-ketoacyl synthase BEST7613_3438 SM01294 BEST7613_3438 BEST7613_3441 SM00849 Metallo-beta-lactamase superfamily BEST7613_3457 SM00646 BEST7613_3457 BEST7613_3458 SM00382 ATPases associated with a variety of cellular activities BEST7613_3461 SM00422 helix_turn_helix, mercury resistance BEST7613_3462 SM01230 BEST7613_3462 BEST7613_3466 SM00860 SMI1 / KNR4 family BEST7613_3479 SM00318 Staphylococcal nuclease homologues BEST7613_3481 SM01005 Alanine racemase, C-terminal domain BEST7613_3507 SM00257 Lysin motif BEST7613_3508 SM00857 Resolvase, N terminal domain BEST7613_3510 SM00861 Transketolase, pyrimidine binding domain BEST7613_3515 SM00448 cheY-homologous receiver domain BEST7613_3529 SM01207 BEST7613_3529 BEST7613_3530 SM00881 CoA binding domain BEST7613_3531 SM00387 Histidine kinase-like ATPases BEST7613_3531 SM00433 TopoisomeraseII BEST7613_3532 SM00434 DNA Topoisomerase IV BEST7613_3536 SM01067 Cellulose binding domain BEST7613_3539 SM00606 Cellulose Binding Domain Type IV BEST7613_3548 SM00878 Biotin carboxylase C-terminal domain BEST7613_3554 SM00823 Phosphopantetheine attachment site BEST7613_3554 SM00824 Thioesterase BEST7613_3555 SM00823 Phosphopantetheine attachment site BEST7613_3556 SM00823 Phosphopantetheine attachment site BEST7613_3556 SM01294 BEST7613_3556 BEST7613_3557 SM00823 Phosphopantetheine attachment site BEST7613_3566 SM00829 Enoylreductase BEST7613_3570 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BEST7613_3573 SM00822 BEST7613_3573 BEST7613_3580 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BEST7613_3585 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BEST7613_3590 SM00656 BEST7613_3590 BEST7613_3593 SM00835 Cupin BEST7613_3600 SM00530 Helix-turn-helix XRE-family like proteins BEST7613_3613 SM00530 Helix-turn-helix XRE-family like proteins BEST7613_3631 SM00860 SMI1 / KNR4 family BEST7613_3633 SM00860 SMI1 / KNR4 family BEST7613_3635 SM00710 Parallel beta-helix repeats BEST7613_3637 SM00342 helix_turn_helix, arabinose operon control protein BEST7613_3640 SM00849 Metallo-beta-lactamase superfamily BEST7613_3641 SM00871 Bacterial transcription activator, effector binding domain BEST7613_3644 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BEST7613_3652 SM00421 helix_turn_helix, Lux Regulon BEST7613_3652 SM00448 cheY-homologous receiver domain BEST7613_3653 SM00257 Lysin motif BEST7613_3654 SM00341 Helicase and RNase D C-terminal BEST7613_3654 SM00487 DEAD-like helicases superfamily BEST7613_3654 SM00490 helicase superfamily c-terminal domain BEST7613_3654 SM00956 BEST7613_3654 BEST7613_3670 SM00861 Transketolase, pyrimidine binding domain BEST7613_3671 SM00327 von Willebrand factor (vWF) type A domain BEST7613_3672 SM00382 ATPases associated with a variety of cellular activities BEST7613_3674 SM00257 Lysin motif BEST7613_3693 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BEST7613_3693 SM00245 tail specific protease BEST7613_3700 SM00014 Acid phosphatase homologues BEST7613_3709 SM00882 Coenzyme A transferase BEST7613_3710 SM00882 Coenzyme A transferase BEST7613_3721 SM00347 helix_turn_helix multiple antibiotic resistance protein BEST7613_3729 SM00382 ATPases associated with a variety of cellular activities BEST7613_3739 SM00567 E-Z type HEAT repeats BEST7613_3739 SM00932 Scaffold protein Nfu/NifU N terminal BEST7613_3740 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BEST7613_3744 SM00357 Cold shock protein domain BEST7613_3752 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BEST7613_3752 SM00475 5'-3' exonuclease BEST7613_3764 SM00354 helix_turn _helix lactose operon repressor BEST7613_3767 SM00491 BEST7613_3767 BEST7613_3769 SM00981 BEST7613_3769 BEST7613_3773 SM00487 DEAD-like helicases superfamily BEST7613_3773 SM00490 helicase superfamily c-terminal domain BEST7613_3784 SM00478 endonuclease III BEST7613_3784 SM00525 BEST7613_3784 BEST7613_3790 SM00479 BEST7613_3790 BEST7613_3790 SM00487 DEAD-like helicases superfamily BEST7613_3790 SM00491 BEST7613_3790 BEST7613_3798 SM00851 MGS-like domain BEST7613_3808 SM00914 BEST7613_3808 BEST7613_3809 SM00028 Tetratricopeptide repeats BEST7613_3822 SM00138 Methyltransferase, chemotaxis proteins BEST7613_3823 SM00562 BEST7613_3823 BEST7613_3829 SM00411 bacterial (prokaryotic) histone like domain BEST7613_3839 SM01240 BEST7613_3839 BEST7613_3840 SM00316 Ribosomal protein S1-like RNA-binding domain BEST7613_3849 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BEST7613_3852 SM00257 Lysin motif BEST7613_3854 SM00487 DEAD-like helicases superfamily BEST7613_3854 SM00490 helicase superfamily c-terminal domain BEST7613_3863 SM00091 PAS domain BEST7613_3863 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEST7613_3863 SM00387 Histidine kinase-like ATPases BEST7613_3863 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_3864 SM00448 cheY-homologous receiver domain BEST7613_3864 SM00862 Transcriptional regulatory protein, C terminal BEST7613_3868 SM00363 S4 RNA-binding domain BEST7613_3871 SM00936 Penicillin-binding protein 5, C-terminal domain BEST7613_3898 SM00387 Histidine kinase-like ATPases BEST7613_3900 SM00936 Penicillin-binding protein 5, C-terminal domain BEST7613_3908 SM00919 Malic enzyme, NAD binding domain BEST7613_3908 SM01274 BEST7613_3908 BEST7613_3911 SM00870 BEST7613_3911 BEST7613_3912 SM00530 Helix-turn-helix XRE-family like proteins BEST7613_3933 SM00849 Metallo-beta-lactamase superfamily BEST7613_3938 SM00849 Metallo-beta-lactamase superfamily BEST7613_3940 SM01350 BEST7613_3940 BEST7613_3950 SM00382 ATPases associated with a variety of cellular activities BEST7613_3952 SM00062 Bacterial periplasmic substrate-binding proteins BEST7613_3952 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BEST7613_3954 SM00046 Diacylglycerol kinase catalytic domain (presumed) BEST7613_3956 SM00422 helix_turn_helix, mercury resistance BEST7613_3958 SM00861 Transketolase, pyrimidine binding domain BEST7613_3962 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BEST7613_3964 SM00091 PAS domain BEST7613_3964 SM00382 ATPases associated with a variety of cellular activities BEST7613_3973 SM00646 BEST7613_3973 BEST7613_3976 SM00448 cheY-homologous receiver domain BEST7613_3977 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BEST7613_3980 SM00363 S4 RNA-binding domain BEST7613_3981 SM00861 Transketolase, pyrimidine binding domain BEST7613_3988 SM00878 Biotin carboxylase C-terminal domain BEST7613_3997 SM00382 ATPases associated with a variety of cellular activities BEST7613_3999 SM00841 Elongation factor P, C-terminal BEST7613_3999 SM01185 BEST7613_3999 BEST7613_4006 SM00529 Helix-turn-helix diphteria tox regulatory element BEST7613_4008 SM00450 Rhodanese Homology Domain BEST7613_4012 SM00487 DEAD-like helicases superfamily BEST7613_4012 SM00490 helicase superfamily c-terminal domain BEST7613_4015 SM00530 Helix-turn-helix XRE-family like proteins BEST7613_4028 SM00382 ATPases associated with a variety of cellular activities BEST7613_4030 SM01091 Transporter associated domain BEST7613_4034 SM00849 Metallo-beta-lactamase superfamily BEST7613_4038 SM00631 BEST7613_4038 BEST7613_4042 SM00028 Tetratricopeptide repeats BEST7613_4050 SM00382 ATPases associated with a variety of cellular activities BEST7613_4051 SM00382 ATPases associated with a variety of cellular activities BEST7613_4061 SM00257 Lysin motif BEST7613_4068 SM00518 AP endonuclease family 2 BEST7613_4069 SM00487 DEAD-like helicases superfamily BEST7613_4069 SM00490 helicase superfamily c-terminal domain BEST7613_4076 SM00400 zinc finger BEST7613_4076 SM00493 BEST7613_4076 BEST7613_4079 SM00116 Domain in cystathionine beta-synthase and other proteins. BEST7613_4088 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BEST7613_4098 SM00729 Elongator protein 3, MiaB family, Radical SAM BEST7613_4101 SM00271 DnaJ molecular chaperone homology domain BEST7613_4105 SM00729 Elongator protein 3, MiaB family, Radical SAM BEST7613_4106 SM00838 Elongation factor G C-terminus BEST7613_4114 SM00849 Metallo-beta-lactamase superfamily BEST7613_4116 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BEST7613_4120 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BEST7613_4122 SM01103 BEST7613_4122 BEST7613_4127 SM00644 BEST7613_4127 BEST7613_4129 SM01350 BEST7613_4129 BEST7613_4135 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_4136 SM00448 cheY-homologous receiver domain BEST7613_4136 SM00862 Transcriptional regulatory protein, C terminal BEST7613_4143 SM00450 Rhodanese Homology Domain BEST7613_4143 SM00849 Metallo-beta-lactamase superfamily BEST7613_4144 SM00450 Rhodanese Homology Domain BEST7613_4151 SM00422 helix_turn_helix, mercury resistance BEST7613_4154 SM01091 Transporter associated domain BEST7613_4166 SM00344 helix_turn_helix ASNC type BEST7613_4191 SM00287 Bacterial SH3 domain homologues BEST7613_4199 SM00422 helix_turn_helix, mercury resistance BEST7613_4201 SM00829 Enoylreductase BEST7613_4203 SM00640 Glycosyl hydrolases family 32 BEST7613_4208 SM00382 ATPases associated with a variety of cellular activities BEST7613_4222 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BEST7613_4222 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BEST7613_4228 SM00650 Ribosomal RNA adenine dimethylases BEST7613_4239 SM00732 Likely ribonuclease with RNase H fold. BEST7613_4241 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BEST7613_4243 SM00382 ATPases associated with a variety of cellular activities BEST7613_4244 SM00062 Bacterial periplasmic substrate-binding proteins BEST7613_4244 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BEST7613_4250 SM00382 ATPases associated with a variety of cellular activities BEST7613_4251 SM00028 Tetratricopeptide repeats BEST7613_4255 SM00382 ATPases associated with a variety of cellular activities BEST7613_4260 SM00287 Bacterial SH3 domain homologues BEST7613_4260 SM00646 BEST7613_4260 BEST7613_4262 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BEST7613_4262 SM00954 Region found in RelA / SpoT proteins BEST7613_4272 SM01323 BEST7613_4272 BEST7613_4276 SM00382 ATPases associated with a variety of cellular activities BEST7613_4277 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BEST7613_4288 SM00257 Lysin motif BEST7613_4297 SM01317 BEST7613_4297 BEST7613_4316 SM00257 Lysin motif BEST7613_4318 SM01004 Delta-aminolevulinic acid dehydratase BEST7613_4325 SM00382 ATPases associated with a variety of cellular activities BEST7613_4325 SM00464 Found in ATP-dependent protease La (LON) BEST7613_4326 SM00382 ATPases associated with a variety of cellular activities BEST7613_4327 SM00382 ATPases associated with a variety of cellular activities BEST7613_4327 SM00994 ClpX C4-type zinc finger BEST7613_4327 SM01086 C-terminal, D2-small domain, of ClpB protein BEST7613_4336 SM00100 Cyclic nucleotide-monophosphate binding domain BEST7613_4343 SM00382 ATPases associated with a variety of cellular activities BEST7613_4353 SM00829 Enoylreductase BEST7613_4362 SM00450 Rhodanese Homology Domain BEST7613_4368 SM00937 BEST7613_4368 BEST7613_4370 SM00287 Bacterial SH3 domain homologues BEST7613_4374 SM00387 Histidine kinase-like ATPases BEST7613_4389 SM00465 GIY-YIG type nucleases (URI domain) BEST7613_4391 SM00487 DEAD-like helicases superfamily BEST7613_4391 SM00490 helicase superfamily c-terminal domain BEST7613_4391 SM01142 BEST7613_4391 BEST7613_4399 SM00100 Cyclic nucleotide-monophosphate binding domain BEST7613_4399 SM00419 helix_turn_helix, cAMP Regulatory protein BEST7613_4407 SM00670 Large family of predicted nucleotide-binding domains BEST7613_4410 SM00421 helix_turn_helix, Lux Regulon BEST7613_4418 SM00732 Likely ribonuclease with RNase H fold. BEST7613_4422 SM00267 diguanylate cyclase BEST7613_4430 SM00382 ATPases associated with a variety of cellular activities BEST7613_4438 SM01248 BEST7613_4438 BEST7613_4439 SM01247 BEST7613_4439 BEST7613_4453 SM01192 BEST7613_4453 BEST7613_4453 SM01193 BEST7613_4453 BEST7613_4454 SM00028 Tetratricopeptide repeats BEST7613_4462 SM00382 ATPases associated with a variety of cellular activities BEST7613_4464 SM00052 Putative diguanylate phosphodiesterase BEST7613_4464 SM00448 cheY-homologous receiver domain BEST7613_4468 SM00448 cheY-homologous receiver domain BEST7613_4468 SM00862 Transcriptional regulatory protein, C terminal BEST7613_4471 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEST7613_4471 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BEST7613_4471 SM00091 PAS domain BEST7613_4473 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BEST7613_4473 SM00387 Histidine kinase-like ATPases BEST7613_4473 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_4479 SM00554 Four repeated domains in the Fasciclin I family of proteins, present in many other contexts. BEST7613_4487 SM00100 Cyclic nucleotide-monophosphate binding domain BEST7613_4494 SM01001 AIR carboxylase BEST7613_4497 SM00320 WD40 repeats BEST7613_4509 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BEST7613_4529 SM00255 Toll - interleukin 1 - resistance BEST7613_4544 SM00838 Elongation factor G C-terminus BEST7613_4544 SM00889 Elongation factor G, domain IV BEST7613_4546 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEST7613_4546 SM00331 Sigma factor PP2C-like phosphatases BEST7613_4548 SM00487 DEAD-like helicases superfamily BEST7613_4548 SM00490 helicase superfamily c-terminal domain BEST7613_4552 SM00382 ATPases associated with a variety of cellular activities BEST7613_4555 SM00930 BEST7613_4555 BEST7613_4560 SM00448 cheY-homologous receiver domain BEST7613_4560 SM00862 Transcriptional regulatory protein, C terminal BEST7613_4565 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEST7613_4565 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_4569 SM00493 BEST7613_4569 BEST7613_4575 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BEST7613_4576 SM00567 E-Z type HEAT repeats BEST7613_4588 SM00897 FIST N domain BEST7613_4588 SM01204 BEST7613_4588 BEST7613_4592 SM00116 Domain in cystathionine beta-synthase and other proteins. BEST7613_4593 SM00861 Transketolase, pyrimidine binding domain BEST7613_4597 SM00849 Metallo-beta-lactamase superfamily BEST7613_4598 SM01130 BEST7613_4598 BEST7613_4599 SM00859 Semialdehyde dehydrogenase, NAD binding domain BEST7613_4602 SM00382 ATPases associated with a variety of cellular activities BEST7613_4602 SM00994 ClpX C4-type zinc finger BEST7613_4602 SM01086 C-terminal, D2-small domain, of ClpB protein BEST7613_4610 SM00271 DnaJ molecular chaperone homology domain BEST7613_4618 SM00962 SRP54-type protein, GTPase domain BEST7613_4623 SM01001 AIR carboxylase BEST7613_4632 SM00382 ATPases associated with a variety of cellular activities BEST7613_4633 SM00028 Tetratricopeptide repeats BEST7613_4638 SM00836 DALR anticodon binding domain BEST7613_4638 SM01016 Arginyl tRNA synthetase N terminal dom BEST7613_4651 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEST7613_4651 SM00387 Histidine kinase-like ATPases BEST7613_4651 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_4657 SM00849 Metallo-beta-lactamase superfamily BEST7613_4662 SM00360 RNA recognition motif BEST7613_4666 SM00382 ATPases associated with a variety of cellular activities BEST7613_4667 SM00382 ATPases associated with a variety of cellular activities BEST7613_4678 SM00046 Diacylglycerol kinase catalytic domain (presumed) BEST7613_4678 SM00851 MGS-like domain BEST7613_4682 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BEST7613_4683 SM00448 cheY-homologous receiver domain BEST7613_4684 SM00448 cheY-homologous receiver domain BEST7613_4685 SM00260 Two component signalling adaptor domain BEST7613_4686 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEST7613_4686 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BEST7613_4686 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEST7613_4687 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BEST7613_4688 SM00073 Histidine Phosphotransfer domain BEST7613_4688 SM00260 Two component signalling adaptor domain BEST7613_4688 SM00387 Histidine kinase-like ATPases BEST7613_4688 SM00448 cheY-homologous receiver domain BEST7613_4688 SM01231 BEST7613_4688 BEST7613_4689 SM00260 Two component signalling adaptor domain BEST7613_4694 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEST7613_4694 SM00267 diguanylate cyclase BEST7613_4697 SM00382 ATPases associated with a variety of cellular activities BEST7613_4699 SM00890 Domain of unknown function BEST7613_4717 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BEST7613_4719 SM00465 GIY-YIG type nucleases (URI domain) BEST7613_4723 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BEST7613_4723 SM00474 3'-5' exonuclease BEST7613_4723 SM00475 5'-3' exonuclease BEST7613_4723 SM00482 DNA polymerase A domain BEST7613_4736 SM00422 helix_turn_helix, mercury resistance BEST7613_4739 SM01118 BEST7613_4739 BEST7613_4743 SM00220 Serine/Threonine protein kinases, catalytic domain BEST7613_4743 SM00287 Bacterial SH3 domain homologues BEST7613_4745 SM00240 Forkhead associated domain BEST7613_4745 SM00382 ATPases associated with a variety of cellular activities BEST7613_4746 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BEST7613_4746 SM00091 PAS domain BEST7613_4746 SM00267 diguanylate cyclase BEST7613_4749 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEST7613_4749 SM00421 helix_turn_helix, Lux Regulon BEST7613_4753 SM00729 Elongator protein 3, MiaB family, Radical SAM BEST7613_4759 SM00448 cheY-homologous receiver domain BEST7613_4759 SM00862 Transcriptional regulatory protein, C terminal BEST7613_4760 SM00387 Histidine kinase-like ATPases BEST7613_4760 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_4762 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BEST7613_4765 SM00422 helix_turn_helix, mercury resistance BEST7613_4770 SM00448 cheY-homologous receiver domain BEST7613_4770 SM00862 Transcriptional regulatory protein, C terminal BEST7613_4771 SM00387 Histidine kinase-like ATPases BEST7613_4771 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_4786 SM00822 BEST7613_4786 BEST7613_4789 SM00421 helix_turn_helix, Lux Regulon BEST7613_4789 SM00448 cheY-homologous receiver domain BEST7613_4790 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BEST7613_4790 SM00091 PAS domain BEST7613_4790 SM00387 Histidine kinase-like ATPases BEST7613_4795 SM00729 Elongator protein 3, MiaB family, Radical SAM BEST7613_4803 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEST7613_4803 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BEST7613_4803 SM00091 PAS domain BEST7613_4803 SM00267 diguanylate cyclase BEST7613_4806 SM01059 Chloramphenicol acetyltransferase BEST7613_4807 SM00240 Forkhead associated domain BEST7613_4821 SM00448 cheY-homologous receiver domain BEST7613_4821 SM00862 Transcriptional regulatory protein, C terminal BEST7613_4822 SM00331 Sigma factor PP2C-like phosphatases BEST7613_4826 SM00387 Histidine kinase-like ATPases BEST7613_4826 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_4838 SM00327 von Willebrand factor (vWF) type A domain BEST7613_4839 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BEST7613_4843 SM00028 Tetratricopeptide repeats BEST7613_4860 SM00382 ATPases associated with a variety of cellular activities BEST7613_4862 SM00419 helix_turn_helix, cAMP Regulatory protein BEST7613_4868 SM01400 BEST7613_4868 BEST7613_4873 SM01211 BEST7613_4873 BEST7613_4878 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BEST7613_4878 SM00387 Histidine kinase-like ATPases BEST7613_4878 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_4888 SM00100 Cyclic nucleotide-monophosphate binding domain BEST7613_4897 SM00382 ATPases associated with a variety of cellular activities BEST7613_4898 SM00448 cheY-homologous receiver domain BEST7613_4899 SM01248 BEST7613_4899 BEST7613_4903 SM00382 ATPases associated with a variety of cellular activities BEST7613_4907 SM00271 DnaJ molecular chaperone homology domain BEST7613_4914 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BEST7613_4916 SM00859 Semialdehyde dehydrogenase, NAD binding domain BEST7613_4917 SM00487 DEAD-like helicases superfamily BEST7613_4917 SM00490 helicase superfamily c-terminal domain BEST7613_4918 SM00729 Elongator protein 3, MiaB family, Radical SAM BEST7613_4919 SM00448 cheY-homologous receiver domain BEST7613_4919 SM00862 Transcriptional regulatory protein, C terminal BEST7613_4933 SM00073 Histidine Phosphotransfer domain BEST7613_4937 SM00052 Putative diguanylate phosphodiesterase BEST7613_4937 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEST7613_4937 SM00267 diguanylate cyclase BEST7613_4946 SM00052 Putative diguanylate phosphodiesterase BEST7613_4946 SM00100 Cyclic nucleotide-monophosphate binding domain BEST7613_4953 SM00838 Elongation factor G C-terminus BEST7613_4953 SM00889 Elongation factor G, domain IV BEST7613_4957 SM00305 Hint (Hedgehog/Intein) domain C-terminal region BEST7613_4957 SM00306 Hint (Hedgehog/Intein) domain N-terminal region BEST7613_4959 SM00732 Likely ribonuclease with RNase H fold. BEST7613_4962 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BEST7613_4962 SM00091 PAS domain BEST7613_4962 SM00267 diguanylate cyclase BEST7613_4962 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEST7613_4963 SM01005 Alanine racemase, C-terminal domain BEST7613_4986 SM00014 Acid phosphatase homologues BEST7613_4991 SM00849 Metallo-beta-lactamase superfamily BEST7613_4991 SM00903 Flavin reductase like domain BEST7613_4992 SM00756 BEST7613_4992 BEST7613_5017 SM00729 Elongator protein 3, MiaB family, Radical SAM BEST7613_5018 SM00382 ATPases associated with a variety of cellular activities BEST7613_5023 SM00729 Elongator protein 3, MiaB family, Radical SAM BEST7613_5024 SM00852 Probable molybdopterin binding domain BEST7613_5025 SM01116 BEST7613_5025 BEST7613_5027 SM00637 BEST7613_5027 BEST7613_5030 SM00028 Tetratricopeptide repeats BEST7613_5038 SM01018 B12 binding domain BEST7613_5041 SM00387 Histidine kinase-like ATPases BEST7613_5041 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_5052 SM00382 ATPases associated with a variety of cellular activities BEST7613_5054 SM00028 Tetratricopeptide repeats BEST7613_5059 SM00959 Rho termination factor, N-terminal domain BEST7613_5060 SM00155 Phospholipase D. Active site motifs. BEST7613_5060 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BEST7613_5064 SM00360 RNA recognition motif BEST7613_5065 SM00450 Rhodanese Homology Domain BEST7613_5069 SM00852 Probable molybdopterin binding domain BEST7613_5073 SM00851 MGS-like domain BEST7613_5073 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BEST7613_5080 SM00382 ATPases associated with a variety of cellular activities BEST7613_5083 SM00487 DEAD-like helicases superfamily BEST7613_5083 SM00490 helicase superfamily c-terminal domain BEST7613_5083 SM00982 BEST7613_5083 BEST7613_5083 SM01058 CarD-like/TRCF domain BEST7613_5096 SM00382 ATPases associated with a variety of cellular activities BEST7613_5098 SM00434 DNA Topoisomerase IV BEST7613_5103 SM00855 Phosphoglycerate mutase family BEST7613_5104 SM00448 cheY-homologous receiver domain BEST7613_5104 SM00862 Transcriptional regulatory protein, C terminal BEST7613_5106 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BEST7613_5111 SM00327 von Willebrand factor (vWF) type A domain BEST7613_5112 SM00331 Sigma factor PP2C-like phosphatases BEST7613_5112 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BEST7613_5120 SM00387 Histidine kinase-like ATPases BEST7613_5120 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_5130 SM00382 ATPases associated with a variety of cellular activities BEST7613_5133 SM00957 SecA DEAD-like domain BEST7613_5133 SM00958 SecA preprotein cross-linking domain BEST7613_5134 SM00849 Metallo-beta-lactamase superfamily BEST7613_5145 SM01329 BEST7613_5145 BEST7613_5146 SM00917 LeuA allosteric (dimerisation) domain BEST7613_5156 SM00909 Sporulation and spore germination BEST7613_5158 SM00347 helix_turn_helix multiple antibiotic resistance protein BEST7613_5159 SM00421 helix_turn_helix, Lux Regulon BEST7613_5166 SM00465 GIY-YIG type nucleases (URI domain) BEST7613_5168 SM00813 Alpha-L-arabinofuranosidase C-terminus BEST7613_5169 SM00893 Electron transfer flavoprotein domain BEST7613_5170 SM00893 Electron transfer flavoprotein domain BEST7613_5175 SM00463 Small MutS-related domain BEST7613_5175 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BEST7613_5175 SM00534 ATPase domain of DNA mismatch repair MUTS family BEST7613_5176 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BEST7613_5176 SM00481 DNA polymerase alpha chain like domain BEST7613_5176 SM00483 DNA polymerase X family BEST7613_5180 SM00873 B3/4 domain BEST7613_5180 SM00874 tRNA synthetase B5 domain BEST7613_5180 SM00896 Ferredoxin-fold anticodon binding domain BEST7613_5182 SM00967 RNA 2'-O ribose methyltransferase substrate binding BEST7613_5190 SM00813 Alpha-L-arabinofuranosidase C-terminus BEST7613_5196 SM01007 Class II Aldolase and Adducin N-terminal domain BEST7613_5209 SM00448 cheY-homologous receiver domain BEST7613_5209 SM00850 LytTr DNA-binding domain BEST7613_5210 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEST7613_5210 SM00387 Histidine kinase-like ATPases BEST7613_5212 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BEST7613_5215 SM00382 ATPases associated with a variety of cellular activities BEST7613_5219 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BEST7613_5225 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BEST7613_5225 SM01232 BEST7613_5225 BEST7613_5226 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BEST7613_5226 SM00474 3'-5' exonuclease BEST7613_5226 SM00475 5'-3' exonuclease BEST7613_5226 SM00482 DNA polymerase A domain BEST7613_5227 SM00091 PAS domain BEST7613_5227 SM00387 Histidine kinase-like ATPases BEST7613_5227 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_5228 SM00448 cheY-homologous receiver domain BEST7613_5228 SM00862 Transcriptional regulatory protein, C terminal BEST7613_5230 SM01329 BEST7613_5230 BEST7613_5239 SM00919 Malic enzyme, NAD binding domain BEST7613_5239 SM01274 BEST7613_5239 BEST7613_5240 SM00481 DNA polymerase alpha chain like domain BEST7613_5246 SM00116 Domain in cystathionine beta-synthase and other proteins. BEST7613_5249 SM00904 Riboflavin kinase BEST7613_5253 SM00382 ATPases associated with a variety of cellular activities BEST7613_5256 SM00062 Bacterial periplasmic substrate-binding proteins BEST7613_5257 SM00062 Bacterial periplasmic substrate-binding proteins BEST7613_5260 SM00849 Metallo-beta-lactamase superfamily BEST7613_5266 SM00852 Probable molybdopterin binding domain BEST7613_5278 SM00981 BEST7613_5278 BEST7613_5284 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEST7613_5285 SM00267 diguanylate cyclase BEST7613_5286 SM00363 S4 RNA-binding domain BEST7613_5286 SM01390 BEST7613_5286 BEST7613_5288 SM00363 S4 RNA-binding domain BEST7613_5291 SM00116 Domain in cystathionine beta-synthase and other proteins. BEST7613_5295 SM00354 helix_turn _helix lactose operon repressor BEST7613_5296 SM00830 Chorismate mutase type II BEST7613_5301 SM00382 ATPases associated with a variety of cellular activities BEST7613_5301 SM00843 BEST7613_5301 BEST7613_5308 SM00919 Malic enzyme, NAD binding domain BEST7613_5308 SM01274 BEST7613_5308 BEST7613_5309 SM00849 Metallo-beta-lactamase superfamily BEST7613_5313 SM00642 Alpha-amylase domain BEST7613_5314 SM00046 Diacylglycerol kinase catalytic domain (presumed) BEST7613_5321 SM00382 ATPases associated with a variety of cellular activities BEST7613_5323 SM00420 helix_turn_helix, Deoxyribose operon repressor BEST7613_5324 SM00363 S4 RNA-binding domain BEST7613_5334 SM00342 helix_turn_helix, arabinose operon control protein BEST7613_5339 SM00729 Elongator protein 3, MiaB family, Radical SAM BEST7613_5339 SM00876 Biotin and Thiamin Synthesis associated domain BEST7613_5345 SM00354 helix_turn _helix lactose operon repressor BEST7613_5350 SM00450 Rhodanese Homology Domain BEST7613_5353 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BEST7613_5353 SM00091 PAS domain BEST7613_5357 SM00382 ATPases associated with a variety of cellular activities BEST7613_5358 SM00387 Histidine kinase-like ATPases BEST7613_5359 SM00448 cheY-homologous receiver domain BEST7613_5359 SM00862 Transcriptional regulatory protein, C terminal BEST7613_5361 SM00382 ATPases associated with a variety of cellular activities BEST7613_5364 SM00382 ATPases associated with a variety of cellular activities BEST7613_5365 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEST7613_5367 SM00729 Elongator protein 3, MiaB family, Radical SAM BEST7613_5370 SM01059 Chloramphenicol acetyltransferase BEST7613_5372 SM00849 Metallo-beta-lactamase superfamily BEST7613_5381 SM00382 ATPases associated with a variety of cellular activities BEST7613_5382 SM00382 ATPases associated with a variety of cellular activities BEST7613_5401 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BEST7613_5401 SM00091 PAS domain BEST7613_5402 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEST7613_5402 SM00387 Histidine kinase-like ATPases BEST7613_5402 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_5405 SM00382 ATPases associated with a variety of cellular activities BEST7613_5410 SM00487 DEAD-like helicases superfamily BEST7613_5410 SM00490 helicase superfamily c-terminal domain BEST7613_5411 SM00448 cheY-homologous receiver domain BEST7613_5412 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEST7613_5412 SM00091 PAS domain BEST7613_5412 SM00387 Histidine kinase-like ATPases BEST7613_5412 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_5415 SM00363 S4 RNA-binding domain BEST7613_5415 SM01390 BEST7613_5415 BEST7613_5417 SM00382 ATPases associated with a variety of cellular activities BEST7613_5421 SM00878 Biotin carboxylase C-terminal domain BEST7613_5426 SM00981 BEST7613_5426 BEST7613_5438 SM00062 Bacterial periplasmic substrate-binding proteins BEST7613_5447 SM00567 E-Z type HEAT repeats BEST7613_5449 SM00947 Carbonic anhydrase BEST7613_5452 SM00530 Helix-turn-helix XRE-family like proteins BEST7613_5453 SM00849 Metallo-beta-lactamase superfamily BEST7613_5457 SM00855 Phosphoglycerate mutase family BEST7613_5462 SM00320 WD40 repeats BEST7613_5469 SM00670 Large family of predicted nucleotide-binding domains BEST7613_5470 SM00877 BEST7613_5470 BEST7613_5472 SM00841 Elongation factor P, C-terminal BEST7613_5472 SM01185 BEST7613_5472 BEST7613_5474 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BEST7613_5481 SM00382 ATPases associated with a variety of cellular activities BEST7613_5483 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. BEST7613_5487 SM00478 endonuclease III BEST7613_5492 SM00464 Found in ATP-dependent protease La (LON) BEST7613_5493 SM00382 ATPases associated with a variety of cellular activities BEST7613_5500 SM01228 BEST7613_5500 BEST7613_5501 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BEST7613_5501 SM00091 PAS domain BEST7613_5501 SM00387 Histidine kinase-like ATPases BEST7613_5501 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_5501 SM00448 cheY-homologous receiver domain BEST7613_5518 SM00487 DEAD-like helicases superfamily BEST7613_5518 SM00490 helicase superfamily c-terminal domain BEST7613_5533 SM00961 Ribulose bisphosphate carboxylase, small chain BEST7613_5536 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BEST7613_5536 SM00245 tail specific protease BEST7613_5540 SM00925 MltA specific insert domain BEST7613_5544 SM00382 ATPases associated with a variety of cellular activities BEST7613_5544 SM01086 C-terminal, D2-small domain, of ClpB protein BEST7613_5546 SM00903 Flavin reductase like domain BEST7613_5559 SM00382 ATPases associated with a variety of cellular activities BEST7613_5560 SM00028 Tetratricopeptide repeats BEST7613_5571 SM00474 3'-5' exonuclease BEST7613_5575 SM00358 Double-stranded RNA binding motif BEST7613_5575 SM00535 Ribonuclease III family BEST7613_5582 SM00062 Bacterial periplasmic substrate-binding proteins BEST7613_5585 SM00909 Sporulation and spore germination BEST7613_5586 SM00387 Histidine kinase-like ATPases BEST7613_5586 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_5586 SM01248 BEST7613_5586 BEST7613_5599 SM00382 ATPases associated with a variety of cellular activities BEST7613_5603 SM00382 ATPases associated with a variety of cellular activities BEST7613_5605 SM00450 Rhodanese Homology Domain BEST7613_5624 SM01350 BEST7613_5624 BEST7613_5627 SM00822 BEST7613_5627 BEST7613_5634 SM00382 ATPases associated with a variety of cellular activities BEST7613_5638 SM00091 PAS domain BEST7613_5638 SM00387 Histidine kinase-like ATPases BEST7613_5638 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_5641 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BEST7613_5646 SM00363 S4 RNA-binding domain BEST7613_5648 SM00052 Putative diguanylate phosphodiesterase BEST7613_5648 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEST7613_5648 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BEST7613_5648 SM00091 PAS domain BEST7613_5648 SM00267 diguanylate cyclase BEST7613_5649 SM00917 LeuA allosteric (dimerisation) domain BEST7613_5654 SM00642 Alpha-amylase domain BEST7613_5663 SM00320 WD40 repeats BEST7613_5667 SM00271 DnaJ molecular chaperone homology domain BEST7613_5672 SM00062 Bacterial periplasmic substrate-binding proteins BEST7613_5677 SM00857 Resolvase, N terminal domain BEST7613_5678 SM00116 Domain in cystathionine beta-synthase and other proteins. BEST7613_5679 SM00028 Tetratricopeptide repeats BEST7613_5680 SM00877 BEST7613_5680 BEST7613_5686 SM00933 BEST7613_5686 BEST7613_5695 SM00421 helix_turn_helix, Lux Regulon BEST7613_5700 SM00226 Low molecular weight phosphatase family BEST7613_5707 SM00872 Alpha mannosidase, middle domain BEST7613_5708 SM00260 Two component signalling adaptor domain BEST7613_5708 SM00387 Histidine kinase-like ATPases BEST7613_5708 SM00448 cheY-homologous receiver domain BEST7613_5708 SM01231 BEST7613_5708 BEST7613_5711 SM00729 Elongator protein 3, MiaB family, Radical SAM BEST7613_5717 SM00257 Lysin motif BEST7613_5721 SM00240 Forkhead associated domain BEST7613_5725 SM00235 Zinc-dependent metalloprotease BEST7613_5736 SM00563 Phosphate acyltransferases BEST7613_5742 SM00562 BEST7613_5742 BEST7613_5758 SM00116 Domain in cystathionine beta-synthase and other proteins. BEST7613_5760 SM00937 BEST7613_5760 BEST7613_5769 SM01011 Aminopeptidase P, N-terminal domain BEST7613_5774 SM00382 ATPases associated with a variety of cellular activities BEST7613_5778 SM00382 ATPases associated with a variety of cellular activities BEST7613_5778 SM01086 C-terminal, D2-small domain, of ClpB protein BEST7613_5787 SM00220 Serine/Threonine protein kinases, catalytic domain BEST7613_5788 SM00028 Tetratricopeptide repeats BEST7613_5792 SM00989 BEST7613_5792 BEST7613_5795 SM00989 BEST7613_5795 BEST7613_5796 SM00320 WD40 repeats BEST7613_5798 SM00191 Integrin alpha (beta-propellor repeats). BEST7613_5798 SM00237 Domains in Na-Ca exchangers and integrin-beta4 BEST7613_5798 SM00560 LamG-like jellyroll fold domain BEST7613_5808 SM00938 Nitrogen regulatory protein P-II BEST7613_5819 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BEST7613_5824 SM00507 HNH nucleases BEST7613_5833 SM01230 BEST7613_5833 BEST7613_5836 SM01091 Transporter associated domain BEST7613_5839 SM00729 Elongator protein 3, MiaB family, Radical SAM BEST7613_5847 SM00052 Putative diguanylate phosphodiesterase BEST7613_5847 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEST7613_5847 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BEST7613_5847 SM00091 PAS domain BEST7613_5847 SM00267 diguanylate cyclase BEST7613_5847 SM01079 BEST7613_5847 BEST7613_5850 SM00487 DEAD-like helicases superfamily BEST7613_5850 SM00490 helicase superfamily c-terminal domain BEST7613_5856 SM00382 ATPases associated with a variety of cellular activities BEST7613_5863 SM00998 Adenylosuccinate lyase C-terminus BEST7613_5866 SM00729 Elongator protein 3, MiaB family, Radical SAM BEST7613_5877 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. BEST7613_5880 SM00849 Metallo-beta-lactamase superfamily BEST7613_5880 SM00903 Flavin reductase like domain BEST7613_5887 SM00358 Double-stranded RNA binding motif BEST7613_5887 SM00535 Ribonuclease III family BEST7613_5889 SM00028 Tetratricopeptide repeats BEST7613_5891 SM01094 CpcD/allophycocyanin linker domain BEST7613_5894 SM00382 ATPases associated with a variety of cellular activities BEST7613_5894 SM01086 C-terminal, D2-small domain, of ClpB protein BEST7613_5910 SM00363 S4 RNA-binding domain BEST7613_5912 SM00450 Rhodanese Homology Domain BEST7613_5914 SM00905 Dihydroneopterin aldolase BEST7613_5926 SM00840 BEST7613_5926 BEST7613_5928 SM00967 RNA 2'-O ribose methyltransferase substrate binding BEST7613_5929 SM00535 Ribonuclease III family BEST7613_5934 SM00271 DnaJ molecular chaperone homology domain BEST7613_5935 SM00028 Tetratricopeptide repeats BEST7613_5937 SM00363 S4 RNA-binding domain BEST7613_5939 SM00382 ATPases associated with a variety of cellular activities BEST7613_5942 SM00448 cheY-homologous receiver domain BEST7613_5942 SM00862 Transcriptional regulatory protein, C terminal BEST7613_5943 SM00226 Low molecular weight phosphatase family BEST7613_5959 SM00421 helix_turn_helix, Lux Regulon BEST7613_5959 SM00448 cheY-homologous receiver domain BEST7613_5960 SM00220 Serine/Threonine protein kinases, catalytic domain BEST7613_5961 SM00873 B3/4 domain BEST7613_5961 SM00874 tRNA synthetase B5 domain BEST7613_5961 SM00896 Ferredoxin-fold anticodon binding domain BEST7613_5962 SM01034 Sensors of blue-light using FAD BEST7613_5963 SM00448 cheY-homologous receiver domain BEST7613_5964 SM00052 Putative diguanylate phosphodiesterase BEST7613_5967 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BEST7613_5967 SM01232 BEST7613_5967 BEST7613_5969 SM00387 Histidine kinase-like ATPases BEST7613_5969 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_5969 SM00448 cheY-homologous receiver domain BEST7613_5971 SM00881 CoA binding domain BEST7613_5973 SM00567 E-Z type HEAT repeats BEST7613_5975 SM00240 Forkhead associated domain BEST7613_5989 SM00917 LeuA allosteric (dimerisation) domain BEST7613_5997 SM00967 RNA 2'-O ribose methyltransferase substrate binding BEST7613_6029 SM01209 BEST7613_6029 BEST7613_6029 SM01210 BEST7613_6029 BEST7613_6033 SM00838 Elongation factor G C-terminus BEST7613_6033 SM00889 Elongation factor G, domain IV BEST7613_6035 SM01403 BEST7613_6035 BEST7613_6038 SM00062 Bacterial periplasmic substrate-binding proteins BEST7613_6046 SM00845 GatB domain BEST7613_6049 SM00382 ATPases associated with a variety of cellular activities BEST7613_6049 SM00962 SRP54-type protein, GTPase domain BEST7613_6049 SM00963 SRP54-type protein, helical bundle domain BEST7613_6056 SM00100 Cyclic nucleotide-monophosphate binding domain BEST7613_6068 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_6069 SM00100 Cyclic nucleotide-monophosphate binding domain BEST7613_6070 SM00091 PAS domain BEST7613_6070 SM00267 diguanylate cyclase BEST7613_6092 SM00663 RNA polymerase I subunit A N-terminus BEST7613_6093 SM00100 Cyclic nucleotide-monophosphate binding domain BEST7613_6093 SM00382 ATPases associated with a variety of cellular activities BEST7613_6098 SM00100 Cyclic nucleotide-monophosphate binding domain BEST7613_6098 SM00419 helix_turn_helix, cAMP Regulatory protein BEST7613_6113 SM00028 Tetratricopeptide repeats BEST7613_6113 SM00271 DnaJ molecular chaperone homology domain BEST7613_6114 SM00393 Putative single-stranded nucleic acids-binding domain BEST7613_6130 SM00400 zinc finger BEST7613_6130 SM00493 BEST7613_6130 BEST7613_6131 SM00316 Ribosomal protein S1-like RNA-binding domain BEST7613_6133 SM00382 ATPases associated with a variety of cellular activities BEST7613_6134 SM00331 Sigma factor PP2C-like phosphatases BEST7613_6134 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_6134 SM00448 cheY-homologous receiver domain BEST7613_6135 SM00448 cheY-homologous receiver domain BEST7613_6136 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEST7613_6136 SM00387 Histidine kinase-like ATPases BEST7613_6136 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_6141 SM00729 Elongator protein 3, MiaB family, Radical SAM BEST7613_6146 SM00382 ATPases associated with a variety of cellular activities BEST7613_6147 SM00448 cheY-homologous receiver domain BEST7613_6150 SM00028 Tetratricopeptide repeats BEST7613_6153 SM00382 ATPases associated with a variety of cellular activities BEST7613_6156 SM00670 Large family of predicted nucleotide-binding domains BEST7613_6158 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEST7613_6158 SM00387 Histidine kinase-like ATPases BEST7613_6158 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_6162 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BEST7613_6162 SM00387 Histidine kinase-like ATPases BEST7613_6162 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_6162 SM00448 cheY-homologous receiver domain BEST7613_6165 SM00028 Tetratricopeptide repeats BEST7613_6172 SM00052 Putative diguanylate phosphodiesterase BEST7613_6172 SM00240 Forkhead associated domain BEST7613_6172 SM00267 diguanylate cyclase BEST7613_6177 SM00479 BEST7613_6177 BEST7613_6195 SM00382 ATPases associated with a variety of cellular activities BEST7613_6203 SM01234 BEST7613_6203 BEST7613_6204 SM00947 Carbonic anhydrase BEST7613_6211 SM00382 ATPases associated with a variety of cellular activities BEST7613_6213 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BEST7613_6221 SM00984 UDP binding domain BEST7613_6233 SM00642 Alpha-amylase domain BEST7613_6236 SM00244 prohibitin homologues BEST7613_6247 SM00047 Lysozyme subfamily 2 BEST7613_6256 SM00420 helix_turn_helix, Deoxyribose operon repressor BEST7613_6256 SM01134 BEST7613_6256 BEST7613_6257 SM01007 Class II Aldolase and Adducin N-terminal domain BEST7613_6258 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BEST7613_6258 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEST7613_6258 SM00319 Homologues of the ligand binding domain of Tar BEST7613_6259 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BEST7613_6259 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEST7613_6259 SM00319 Homologues of the ligand binding domain of Tar BEST7613_6260 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BEST7613_6260 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEST7613_6260 SM00319 Homologues of the ligand binding domain of Tar BEST7613_6261 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BEST7613_6261 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEST7613_6261 SM00319 Homologues of the ligand binding domain of Tar BEST7613_6265 SM00642 Alpha-amylase domain BEST7613_6266 SM01091 Transporter associated domain BEST7613_6277 SM00316 Ribosomal protein S1-like RNA-binding domain BEST7613_6279 SM00344 helix_turn_helix ASNC type BEST7613_6283 SM00387 Histidine kinase-like ATPases BEST7613_6283 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_6284 SM01298 BEST7613_6284 BEST7613_6285 SM00479 BEST7613_6285 BEST7613_6291 SM00091 PAS domain BEST7613_6291 SM00387 Histidine kinase-like ATPases BEST7613_6292 SM00448 cheY-homologous receiver domain BEST7613_6294 SM00382 ATPases associated with a variety of cellular activities BEST7613_6307 SM00421 helix_turn_helix, Lux Regulon BEST7613_6307 SM00448 cheY-homologous receiver domain BEST7613_6308 SM00387 Histidine kinase-like ATPases BEST7613_6314 SM00052 Putative diguanylate phosphodiesterase BEST7613_6323 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BEST7613_6332 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BEST7613_6332 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BEST7613_6334 SM00923 MbtH-like protein BEST7613_6335 SM00823 Phosphopantetheine attachment site BEST7613_6335 SM00824 Thioesterase BEST7613_6351 SM01240 BEST7613_6351 BEST7613_6371 SM00729 Elongator protein 3, MiaB family, Radical SAM BEST7613_6387 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BEST7613_6394 SM00382 ATPases associated with a variety of cellular activities BEST7613_6395 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEST7613_6395 SM00866 BEST7613_6395 BEST7613_6401 SM00465 GIY-YIG type nucleases (URI domain) BEST7613_6406 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BEST7613_6411 SM00382 ATPases associated with a variety of cellular activities BEST7613_6416 SM00382 ATPases associated with a variety of cellular activities BEST7613_6416 SM00930 BEST7613_6416 BEST7613_6419 SM00493 BEST7613_6419 BEST7613_6430 SM00347 helix_turn_helix multiple antibiotic resistance protein BEST7613_6437 SM00382 ATPases associated with a variety of cellular activities BEST7613_6443 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BEST7613_6444 SM00448 cheY-homologous receiver domain BEST7613_6444 SM00862 Transcriptional regulatory protein, C terminal BEST7613_6445 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEST7613_6445 SM00387 Histidine kinase-like ATPases BEST7613_6445 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_6453 SM00421 helix_turn_helix, Lux Regulon BEST7613_6453 SM00448 cheY-homologous receiver domain BEST7613_6454 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEST7613_6454 SM00387 Histidine kinase-like ATPases BEST7613_6461 SM00382 ATPases associated with a variety of cellular activities BEST7613_6466 SM00387 Histidine kinase-like ATPases BEST7613_6466 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_6467 SM00448 cheY-homologous receiver domain BEST7613_6467 SM00862 Transcriptional regulatory protein, C terminal BEST7613_6471 SM00835 Cupin BEST7613_6474 SM00382 ATPases associated with a variety of cellular activities BEST7613_6476 SM00382 ATPases associated with a variety of cellular activities BEST7613_6508 SM00316 Ribosomal protein S1-like RNA-binding domain BEST7613_6508 SM00357 Cold shock protein domain BEST7613_6508 SM00955 BEST7613_6508 BEST7613_6512 SM00530 Helix-turn-helix XRE-family like proteins BEST7613_6513 SM00530 Helix-turn-helix XRE-family like proteins BEST7613_6514 SM00530 Helix-turn-helix XRE-family like proteins BEST7613_6516 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BEST7613_6516 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEST7613_6520 SM00116 Domain in cystathionine beta-synthase and other proteins. BEST7613_6520 SM00382 ATPases associated with a variety of cellular activities BEST7613_6523 SM00752 Horizontally Transferred TransMembrane Domain BEST7613_6526 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BEST7613_6530 SM00116 Domain in cystathionine beta-synthase and other proteins. BEST7613_6530 SM00382 ATPases associated with a variety of cellular activities BEST7613_6537 SM01192 BEST7613_6537 BEST7613_6537 SM01193 BEST7613_6537 BEST7613_6541 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BEST7613_6544 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEST7613_6549 SM00636 BEST7613_6549 BEST7613_6553 SM00421 helix_turn_helix, Lux Regulon BEST7613_6553 SM00448 cheY-homologous receiver domain BEST7613_6556 SM00382 ATPases associated with a variety of cellular activities BEST7613_6558 SM00331 Sigma factor PP2C-like phosphatases BEST7613_6564 SM00354 helix_turn _helix lactose operon repressor BEST7613_6565 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEST7613_6565 SM00895 BEST7613_6565 BEST7613_6582 SM00530 Helix-turn-helix XRE-family like proteins BEST7613_6590 SM00640 Glycosyl hydrolases family 32 BEST7613_6600 SM00642 Alpha-amylase domain BEST7613_6606 SM00642 Alpha-amylase domain BEST7613_6607 SM00354 helix_turn _helix lactose operon repressor BEST7613_6611 SM00947 Carbonic anhydrase BEST7613_6614 SM00382 ATPases associated with a variety of cellular activities BEST7613_6615 SM00387 Histidine kinase-like ATPases BEST7613_6616 SM00448 cheY-homologous receiver domain BEST7613_6616 SM00862 Transcriptional regulatory protein, C terminal BEST7613_6626 SM00028 Tetratricopeptide repeats BEST7613_6627 SM00382 ATPases associated with a variety of cellular activities BEST7613_6648 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEST7613_6648 SM00866 BEST7613_6648 BEST7613_6650 SM00347 helix_turn_helix multiple antibiotic resistance protein BEST7613_6653 SM00347 helix_turn_helix multiple antibiotic resistance protein BEST7613_6661 SM00382 ATPases associated with a variety of cellular activities BEST7613_6662 SM00487 DEAD-like helicases superfamily BEST7613_6662 SM00490 helicase superfamily c-terminal domain BEST7613_6667 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BEST7613_6669 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BEST7613_6669 SM00245 tail specific protease BEST7613_6671 SM00382 ATPases associated with a variety of cellular activities BEST7613_6674 SM00937 BEST7613_6674 BEST7613_6675 SM00957 SecA DEAD-like domain BEST7613_6675 SM00958 SecA preprotein cross-linking domain BEST7613_6693 SM00487 DEAD-like helicases superfamily BEST7613_6693 SM00490 helicase superfamily c-terminal domain BEST7613_6695 SM00421 helix_turn_helix, Lux Regulon BEST7613_6695 SM00448 cheY-homologous receiver domain BEST7613_6696 SM00387 Histidine kinase-like ATPases BEST7613_6704 SM00984 UDP binding domain BEST7613_6708 SM00646 BEST7613_6708 BEST7613_6718 SM00382 ATPases associated with a variety of cellular activities BEST7613_6726 SM00047 Lysozyme subfamily 2 BEST7613_6726 SM00287 Bacterial SH3 domain homologues BEST7613_6736 SM00854 Bacterial capsule synthesis protein PGA_cap BEST7613_6739 SM00354 helix_turn _helix lactose operon repressor BEST7613_6742 SM00382 ATPases associated with a variety of cellular activities BEST7613_6745 SM00287 Bacterial SH3 domain homologues BEST7613_6756 SM00903 Flavin reductase like domain BEST7613_6759 SM00344 helix_turn_helix ASNC type BEST7613_6771 SM00984 UDP binding domain BEST7613_6777 SM00487 DEAD-like helicases superfamily BEST7613_6777 SM00490 helicase superfamily c-terminal domain BEST7613_6779 SM00420 helix_turn_helix, Deoxyribose operon repressor BEST7613_6779 SM01134 BEST7613_6779 BEST7613_6785 SM00387 Histidine kinase-like ATPases BEST7613_6788 SM00028 Tetratricopeptide repeats BEST7613_6793 SM00347 helix_turn_helix multiple antibiotic resistance protein BEST7613_6795 SM00710 Parallel beta-helix repeats BEST7613_6795 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses BEST7613_6801 SM00938 Nitrogen regulatory protein P-II BEST7613_6802 SM00014 Acid phosphatase homologues BEST7613_6808 SM00155 Phospholipase D. Active site motifs. BEST7613_6809 SM00422 helix_turn_helix, mercury resistance BEST7613_6820 SM00028 Tetratricopeptide repeats BEST7613_6821 SM00729 Elongator protein 3, MiaB family, Radical SAM BEST7613_6824 SM00327 von Willebrand factor (vWF) type A domain BEST7613_6825 SM00327 von Willebrand factor (vWF) type A domain BEST7613_6833 SM00382 ATPases associated with a variety of cellular activities BEST7613_6845 SM00226 Low molecular weight phosphatase family BEST7613_6853 SM00937 BEST7613_6853 BEST7613_6857 SM00919 Malic enzyme, NAD binding domain BEST7613_6857 SM01274 BEST7613_6857 BEST7613_6860 SM00357 Cold shock protein domain BEST7613_6860 SM00382 ATPases associated with a variety of cellular activities BEST7613_6860 SM00959 Rho termination factor, N-terminal domain BEST7613_6865 SM00448 cheY-homologous receiver domain BEST7613_6871 SM00155 Phospholipase D. Active site motifs. BEST7613_6875 SM00382 ATPases associated with a variety of cellular activities BEST7613_6876 SM00155 Phospholipase D. Active site motifs. BEST7613_6883 SM00100 Cyclic nucleotide-monophosphate binding domain BEST7613_6883 SM00419 helix_turn_helix, cAMP Regulatory protein BEST7613_6885 SM00836 DALR anticodon binding domain BEST7613_6885 SM01016 Arginyl tRNA synthetase N terminal dom BEST7613_6888 SM00729 Elongator protein 3, MiaB family, Radical SAM BEST7613_6897 SM00028 Tetratricopeptide repeats BEST7613_6906 SM00347 helix_turn_helix multiple antibiotic resistance protein BEST7613_6907 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BEST7613_6911 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BEST7613_6930 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BEST7613_6938 SM00858 BEST7613_6938 BEST7613_6948 SM00986 Uracil DNA glycosylase superfamily BEST7613_6948 SM00987 UreE urease accessory protein, C-terminal domain BEST7613_6955 SM00640 Glycosyl hydrolases family 32 BEST7613_6958 SM01061 CAT RNA binding domain BEST7613_6988 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BEST7613_6994 SM01061 CAT RNA binding domain BEST7613_6997 SM00347 helix_turn_helix multiple antibiotic resistance protein BEST7613_6998 SM00363 S4 RNA-binding domain BEST7613_7000 SM00954 Region found in RelA / SpoT proteins BEST7613_7015 SM01060 BEST7613_7015 BEST7613_7025 SM00382 ATPases associated with a variety of cellular activities BEST7613_7026 SM00382 ATPases associated with a variety of cellular activities BEST7613_7033 SM00382 ATPases associated with a variety of cellular activities BEST7613_7043 SM00421 helix_turn_helix, Lux Regulon BEST7613_7043 SM00448 cheY-homologous receiver domain BEST7613_7049 SM00822 BEST7613_7049 BEST7613_7050 SM00882 Coenzyme A transferase BEST7613_7051 SM00882 Coenzyme A transferase BEST7613_7058 SM01060 BEST7613_7058 BEST7613_7061 SM01061 CAT RNA binding domain BEST7613_7064 SM00487 DEAD-like helicases superfamily BEST7613_7064 SM00490 helicase superfamily c-terminal domain BEST7613_7083 SM00860 SMI1 / KNR4 family BEST7613_7095 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BEST7613_7097 SM01133 BEST7613_7097 BEST7613_7103 SM00382 ATPases associated with a variety of cellular activities BEST7613_7105 SM00062 Bacterial periplasmic substrate-binding proteins BEST7613_7119 SM00382 ATPases associated with a variety of cellular activities BEST7613_7120 SM00387 Histidine kinase-like ATPases BEST7613_7121 SM00448 cheY-homologous receiver domain BEST7613_7121 SM00862 Transcriptional regulatory protein, C terminal BEST7613_7132 SM00420 helix_turn_helix, Deoxyribose operon repressor BEST7613_7132 SM01134 BEST7613_7132 BEST7613_7138 SM00387 Histidine kinase-like ATPases BEST7613_7144 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. BEST7613_7150 SM00564 beta-propeller repeat BEST7613_7157 SM00347 helix_turn_helix multiple antibiotic resistance protein BEST7613_7162 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEST7613_7162 SM00895 BEST7613_7162 BEST7613_7165 SM01350 BEST7613_7165 BEST7613_7170 SM00345 helix_turn_helix gluconate operon transcriptional repressor BEST7613_7170 SM00866 BEST7613_7170 BEST7613_7173 SM00382 ATPases associated with a variety of cellular activities BEST7613_7194 SM00091 PAS domain BEST7613_7194 SM00382 ATPases associated with a variety of cellular activities BEST7613_7196 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BEST7613_7197 SM00849 Metallo-beta-lactamase superfamily BEST7613_7200 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BEST7613_7200 SM00091 PAS domain BEST7613_7200 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BEST7613_7200 SM00387 Histidine kinase-like ATPases BEST7613_7200 SM00388 His Kinase A (phosphoacceptor) domain BEST7613_7201 SM00448 cheY-homologous receiver domain BEST7613_7201 SM00862 Transcriptional regulatory protein, C terminal BEST7613_7202 SM00788 Adenylosuccinate synthetase BEST7613_7204 SM00382 ATPases associated with a variety of cellular activities BEST7613_7211 SM00267 diguanylate cyclase BEST7613_7216 SM01131 BEST7613_7216 BEST7613_7226 SM00382 ATPases associated with a variety of cellular activities BEST7613_7234 SM00849 Metallo-beta-lactamase superfamily BEST7613_7235 SM00347 helix_turn_helix multiple antibiotic resistance protein BEST7613_7243 SM00422 helix_turn_helix, mercury resistance BEST7613_7248 SM01266 BEST7613_7248 BEST7613_7250 SM00354 helix_turn _helix lactose operon repressor BEST7613_7256 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BEST7613_7260 SM00470 ParB-like nuclease domain BEST7613_7263 SM00470 ParB-like nuclease domain BEST7613_7265 SM01228 BEST7613_7265 BEST7613_7267 SM00322 K homology RNA-binding domain BEST7613_7267 SM00393 Putative single-stranded nucleic acids-binding domain BEST7613_7267 SM01245 BEST7613_7267