AW03_000010 SM00382 ATPases associated with a variety of cellular activities AW03_000010 SM00760 Bacterial dnaA protein helix-turn-helix domain AW03_000020 SM00480 DNA polymerase III beta subunit AW03_000070 SM00387 Histidine kinase-like ATPases AW03_000070 SM00433 TopoisomeraseII AW03_000080 SM00434 DNA Topoisomerase IV AW03_000110 SM00116 Domain in cystathionine beta-synthase and other proteins. AW03_000110 SM01240 AW03_000110 AW03_000120 SM00936 Penicillin-binding protein 5, C-terminal domain AW03_000180 SM00257 Lysin motif AW03_000180 SM00636 AW03_000180 AW03_000210 SM00382 ATPases associated with a variety of cellular activities AW03_000230 SM00493 AW03_000230 AW03_000380 SM00465 GIY-YIG type nucleases (URI domain) AW03_000400 SM00966 SpoVT / AbrB like domain AW03_000430 SM01208 AW03_000430 AW03_000440 SM00493 AW03_000440 AW03_000450 SM00650 Ribosomal RNA adenine dimethylases AW03_000530 SM01400 AW03_000530 AW03_000570 SM00487 DEAD-like helicases superfamily AW03_000570 SM00490 helicase superfamily c-terminal domain AW03_000570 SM00982 AW03_000570 AW03_000570 SM01058 CarD-like/TRCF domain AW03_000580 SM00966 SpoVT / AbrB like domain AW03_000610 SM00363 S4 RNA-binding domain AW03_000650 SM00316 Ribosomal protein S1-like RNA-binding domain AW03_000660 SM00331 Sigma factor PP2C-like phosphatases AW03_000660 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AW03_000680 SM00220 Serine/Threonine protein kinases, catalytic domain AW03_000690 SM00977 TilS substrate C-terminal domain AW03_000710 SM00382 ATPases associated with a variety of cellular activities AW03_000800 SM00905 Dihydroneopterin aldolase AW03_000820 SM00530 Helix-turn-helix XRE-family like proteins AW03_000880 SM00382 ATPases associated with a variety of cellular activities AW03_000880 SM01086 C-terminal, D2-small domain, of ClpB protein AW03_000890 SM00382 ATPases associated with a variety of cellular activities AW03_000910 SM00670 Large family of predicted nucleotide-binding domains AW03_000960 SM00840 AW03_000960 AW03_000970 SM00535 Ribonuclease III family AW03_000990 SM00967 RNA 2'-O ribose methyltransferase substrate binding AW03_001030 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. AW03_001030 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AW03_001040 SM00649 Ribosomal protein L11/L12 AW03_001100 SM00663 RNA polymerase I subunit A N-terminus AW03_001140 SM00838 Elongation factor G C-terminus AW03_001140 SM00889 Elongation factor G, domain IV AW03_001170 SM01403 AW03_001170 AW03_001210 SM01382 AW03_001210 AW03_001210 SM01383 AW03_001210 AW03_001240 SM00322 K homology RNA-binding domain AW03_001280 SM01374 AW03_001280 AW03_001290 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. AW03_001410 SM00316 Ribosomal protein S1-like RNA-binding domain AW03_001460 SM00662 RNA polymerases D AW03_001480 SM00382 ATPases associated with a variety of cellular activities AW03_001490 SM00382 ATPases associated with a variety of cellular activities AW03_001560 SM00646 AW03_001560 AW03_001590 SM01251 AW03_001590 AW03_001670 SM00342 helix_turn_helix, arabinose operon control protein AW03_001830 SM00014 Acid phosphatase homologues AW03_001890 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AW03_001930 SM00448 cheY-homologous receiver domain AW03_001930 SM00862 Transcriptional regulatory protein, C terminal AW03_001940 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AW03_001940 SM00388 His Kinase A (phosphoacceptor) domain AW03_002100 SM00347 helix_turn_helix multiple antibiotic resistance protein AW03_002140 SM00342 helix_turn_helix, arabinose operon control protein AW03_002270 SM00450 Rhodanese Homology Domain AW03_002310 SM00345 helix_turn_helix gluconate operon transcriptional repressor AW03_002310 SM00866 AW03_002310 AW03_002390 SM00387 Histidine kinase-like ATPases AW03_002400 SM00448 cheY-homologous receiver domain AW03_002410 SM01130 AW03_002410 AW03_002440 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AW03_002450 SM00345 helix_turn_helix gluconate operon transcriptional repressor AW03_002450 SM00895 AW03_002450 AW03_002460 SM00858 AW03_002460 AW03_002500 SM00448 cheY-homologous receiver domain AW03_002500 SM00862 Transcriptional regulatory protein, C terminal AW03_002510 SM00387 Histidine kinase-like ATPases AW03_002510 SM00388 His Kinase A (phosphoacceptor) domain AW03_002520 SM00382 ATPases associated with a variety of cellular activities AW03_002560 SM00327 von Willebrand factor (vWF) type A domain AW03_002640 SM00870 AW03_002640 AW03_002680 SM00387 Histidine kinase-like ATPases AW03_002690 SM00448 cheY-homologous receiver domain AW03_002690 SM00850 LytTr DNA-binding domain AW03_002700 SM00382 ATPases associated with a variety of cellular activities AW03_002770 SM00028 Tetratricopeptide repeats AW03_002790 SM00642 Alpha-amylase domain AW03_002810 SM00382 ATPases associated with a variety of cellular activities AW03_002920 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AW03_002930 SM00116 Domain in cystathionine beta-synthase and other proteins. AW03_002930 SM00382 ATPases associated with a variety of cellular activities AW03_002990 SM00632 AW03_002990 AW03_002990 SM00642 Alpha-amylase domain AW03_003030 SM00347 helix_turn_helix multiple antibiotic resistance protein AW03_003260 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AW03_003310 SM00833 Cobalamin synthesis protein cobW C-terminal domain AW03_003330 SM00062 Bacterial periplasmic substrate-binding proteins AW03_003400 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AW03_003400 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AW03_003420 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AW03_003440 SM00823 Phosphopantetheine attachment site AW03_003440 SM01294 AW03_003440 AW03_003460 SM00823 Phosphopantetheine attachment site AW03_003460 SM01294 AW03_003460 AW03_003510 SM00345 helix_turn_helix gluconate operon transcriptional repressor AW03_003540 SM00382 ATPases associated with a variety of cellular activities AW03_003560 SM00062 Bacterial periplasmic substrate-binding proteins AW03_003640 SM00710 Parallel beta-helix repeats AW03_003640 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses AW03_003690 SM00382 ATPases associated with a variety of cellular activities AW03_003710 SM00448 cheY-homologous receiver domain AW03_003710 SM00862 Transcriptional regulatory protein, C terminal AW03_003720 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AW03_003720 SM00387 Histidine kinase-like ATPases AW03_003720 SM00388 His Kinase A (phosphoacceptor) domain AW03_003730 SM00028 Tetratricopeptide repeats AW03_003790 SM00382 ATPases associated with a variety of cellular activities AW03_003850 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AW03_003860 SM00345 helix_turn_helix gluconate operon transcriptional repressor AW03_003930 SM00420 helix_turn_helix, Deoxyribose operon repressor AW03_003980 SM01329 AW03_003980 AW03_004080 SM00796 Allophanate hydrolase subunit 1 AW03_004090 SM00797 Allophanate hydrolase subunit 2 AW03_004100 SM00346 helix_turn_helix isocitrate lyase regulation AW03_004250 SM00344 helix_turn_helix ASNC type AW03_004260 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AW03_004260 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AW03_004260 SM00493 AW03_004260 AW03_004280 SM00267 diguanylate cyclase AW03_004450 SM00091 PAS domain AW03_004450 SM00387 Histidine kinase-like ATPases AW03_004460 SM00448 cheY-homologous receiver domain AW03_004490 SM00382 ATPases associated with a variety of cellular activities AW03_004590 SM00487 DEAD-like helicases superfamily AW03_004590 SM00490 helicase superfamily c-terminal domain AW03_004650 SM01005 Alanine racemase, C-terminal domain AW03_004700 SM00387 Histidine kinase-like ATPases AW03_004710 SM00331 Sigma factor PP2C-like phosphatases AW03_004750 SM00331 Sigma factor PP2C-like phosphatases AW03_004750 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AW03_004780 SM00347 helix_turn_helix multiple antibiotic resistance protein AW03_004790 SM00316 Ribosomal protein S1-like RNA-binding domain AW03_004790 SM00732 Likely ribonuclease with RNase H fold. AW03_004800 SM00731 SprT homologues. AW03_004840 SM00220 Serine/Threonine protein kinases, catalytic domain AW03_004840 SM01260 AW03_004840 AW03_004900 SM00220 Serine/Threonine protein kinases, catalytic domain AW03_004900 SM01260 AW03_004900 AW03_004910 SM00382 ATPases associated with a variety of cellular activities AW03_004940 SM00530 Helix-turn-helix XRE-family like proteins AW03_004970 SM00357 Cold shock protein domain AW03_004980 SM01058 CarD-like/TRCF domain AW03_004990 SM00342 helix_turn_helix, arabinose operon control protein AW03_005010 SM00342 helix_turn_helix, arabinose operon control protein AW03_005010 SM00871 Bacterial transcription activator, effector binding domain AW03_005020 SM00345 helix_turn_helix gluconate operon transcriptional repressor AW03_005080 SM00345 helix_turn_helix gluconate operon transcriptional repressor AW03_005190 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AW03_005250 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AW03_005250 SM00387 Histidine kinase-like ATPases AW03_005250 SM00388 His Kinase A (phosphoacceptor) domain AW03_005260 SM00448 cheY-homologous receiver domain AW03_005260 SM00862 Transcriptional regulatory protein, C terminal AW03_005280 SM00345 helix_turn_helix gluconate operon transcriptional repressor AW03_005300 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AW03_005330 SM00387 Histidine kinase-like ATPases AW03_005340 SM00421 helix_turn_helix, Lux Regulon AW03_005340 SM00448 cheY-homologous receiver domain AW03_005380 SM00422 helix_turn_helix, mercury resistance AW03_005380 SM00871 Bacterial transcription activator, effector binding domain AW03_005580 SM00382 ATPases associated with a variety of cellular activities AW03_005610 SM00347 helix_turn_helix multiple antibiotic resistance protein AW03_005640 SM00347 helix_turn_helix multiple antibiotic resistance protein AW03_005640 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AW03_005670 SM00345 helix_turn_helix gluconate operon transcriptional repressor AW03_005670 SM00895 AW03_005670 AW03_005680 SM00257 Lysin motif AW03_005680 SM00636 AW03_005680 AW03_005710 SM00098 Alkaline phosphatase homologues AW03_005750 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AW03_005820 SM00345 helix_turn_helix gluconate operon transcriptional repressor AW03_005820 SM00866 AW03_005820 AW03_005920 SM00382 ATPases associated with a variety of cellular activities AW03_005940 SM00881 CoA binding domain AW03_005990 SM00883 Chaperonin 10 Kd subunit AW03_006020 SM00028 Tetratricopeptide repeats AW03_006020 SM00382 ATPases associated with a variety of cellular activities AW03_006030 SM00829 Enoylreductase AW03_006120 SM00829 Enoylreductase AW03_006260 SM00460 Transglutaminase/protease-like homologues AW03_006350 SM01001 AIR carboxylase AW03_006370 SM00998 Adenylosuccinate lyase C-terminus AW03_006450 SM00798 AICARFT/IMPCHase bienzyme AW03_006450 SM00851 MGS-like domain AW03_006460 SM01209 AW03_006460 AW03_006460 SM01210 AW03_006460 AW03_006470 SM00344 helix_turn_helix ASNC type AW03_006570 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AW03_006570 SM00292 breast cancer carboxy-terminal domain AW03_006570 SM00532 Ligase N family AW03_006640 SM00845 GatB domain AW03_006670 SM00046 Diacylglycerol kinase catalytic domain (presumed) AW03_006830 SM00028 Tetratricopeptide repeats AW03_006960 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AW03_006960 SM00387 Histidine kinase-like ATPases AW03_006970 SM00342 helix_turn_helix, arabinose operon control protein AW03_006970 SM00448 cheY-homologous receiver domain AW03_007020 SM00342 helix_turn_helix, arabinose operon control protein AW03_007350 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AW03_007360 SM00382 ATPases associated with a variety of cellular activities AW03_007390 SM00422 helix_turn_helix, mercury resistance AW03_007430 SM00382 ATPases associated with a variety of cellular activities AW03_007440 SM00487 DEAD-like helicases superfamily AW03_007440 SM00490 helicase superfamily c-terminal domain AW03_007460 SM00829 Enoylreductase AW03_007470 SM00382 ATPases associated with a variety of cellular activities AW03_007530 SM00656 AW03_007530 AW03_007550 SM00387 Histidine kinase-like ATPases AW03_007560 SM00448 cheY-homologous receiver domain AW03_007590 SM00849 Metallo-beta-lactamase superfamily AW03_007770 SM00642 Alpha-amylase domain AW03_007780 SM00345 helix_turn_helix gluconate operon transcriptional repressor AW03_007780 SM00866 AW03_007780 AW03_007840 SM00226 Low molecular weight phosphatase family AW03_007970 SM00478 endonuclease III AW03_008040 SM00861 Transketolase, pyrimidine binding domain AW03_008070 SM00382 ATPases associated with a variety of cellular activities AW03_008170 SM00382 ATPases associated with a variety of cellular activities AW03_008180 SM00382 ATPases associated with a variety of cellular activities AW03_008210 SM00387 Histidine kinase-like ATPases AW03_008220 SM00421 helix_turn_helix, Lux Regulon AW03_008220 SM00448 cheY-homologous receiver domain AW03_008230 SM00382 ATPases associated with a variety of cellular activities AW03_008320 SM00382 ATPases associated with a variety of cellular activities AW03_008380 SM00347 helix_turn_helix multiple antibiotic resistance protein AW03_008540 SM00287 Bacterial SH3 domain homologues AW03_008600 SM00478 endonuclease III AW03_008600 SM00525 AW03_008600 AW03_008660 SM00382 ATPases associated with a variety of cellular activities AW03_008790 SM01060 AW03_008790 AW03_008800 SM00382 ATPases associated with a variety of cellular activities AW03_008810 SM00062 Bacterial periplasmic substrate-binding proteins AW03_008870 SM00530 Helix-turn-helix XRE-family like proteins AW03_008890 SM00567 E-Z type HEAT repeats AW03_008950 SM00763 PrkA AAA domain AW03_008970 SM00347 helix_turn_helix multiple antibiotic resistance protein AW03_009030 SM00345 helix_turn_helix gluconate operon transcriptional repressor AW03_009040 SM00382 ATPases associated with a variety of cellular activities AW03_009050 SM00382 ATPases associated with a variety of cellular activities AW03_009070 SM00357 Cold shock protein domain AW03_009090 SM00267 diguanylate cyclase AW03_009150 SM00318 Staphylococcal nuclease homologues AW03_009170 SM00363 S4 RNA-binding domain AW03_009190 SM00116 Domain in cystathionine beta-synthase and other proteins. AW03_009280 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AW03_009280 SM00387 Histidine kinase-like ATPases AW03_009290 SM00421 helix_turn_helix, Lux Regulon AW03_009290 SM00448 cheY-homologous receiver domain AW03_009330 SM00257 Lysin motif AW03_009380 SM00098 Alkaline phosphatase homologues AW03_009390 SM00257 Lysin motif AW03_009460 SM00345 helix_turn_helix gluconate operon transcriptional repressor AW03_009520 SM00563 Phosphate acyltransferases AW03_009530 SM01091 Transporter associated domain AW03_009540 SM00422 helix_turn_helix, mercury resistance AW03_009560 SM01091 Transporter associated domain AW03_009680 SM00382 ATPases associated with a variety of cellular activities AW03_009690 SM00382 ATPases associated with a variety of cellular activities AW03_009800 SM00729 Elongator protein 3, MiaB family, Radical SAM AW03_009860 SM00382 ATPases associated with a variety of cellular activities AW03_009900 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AW03_009950 SM00347 helix_turn_helix multiple antibiotic resistance protein AW03_010010 SM00382 ATPases associated with a variety of cellular activities AW03_010170 SM01022 AW03_010170 AW03_010190 SM00849 Metallo-beta-lactamase superfamily AW03_010280 SM00829 Enoylreductase AW03_010300 SM00855 Phosphoglycerate mutase family AW03_010350 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AW03_010380 SM00914 AW03_010380 AW03_010410 SM00894 Excalibur calcium-binding domain AW03_010480 SM00347 helix_turn_helix multiple antibiotic resistance protein AW03_010530 SM00354 helix_turn _helix lactose operon repressor AW03_010780 SM00342 helix_turn_helix, arabinose operon control protein AW03_010790 SM00354 helix_turn _helix lactose operon repressor AW03_010830 SM00345 helix_turn_helix gluconate operon transcriptional repressor AW03_010920 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AW03_010980 SM00316 Ribosomal protein S1-like RNA-binding domain AW03_011000 SM00752 Horizontally Transferred TransMembrane Domain AW03_011180 SM00859 Semialdehyde dehydrogenase, NAD binding domain AW03_011220 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AW03_011230 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AW03_011330 SM00825 Beta-ketoacyl synthase AW03_011350 SM00382 ATPases associated with a variety of cellular activities AW03_011360 SM00382 ATPases associated with a variety of cellular activities AW03_011440 SM00382 ATPases associated with a variety of cellular activities AW03_011450 SM00382 ATPases associated with a variety of cellular activities AW03_011570 SM01118 AW03_011570 AW03_011590 SM00954 Region found in RelA / SpoT proteins AW03_012180 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AW03_012180 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AW03_012270 SM00382 ATPases associated with a variety of cellular activities AW03_012290 SM00835 Cupin AW03_012350 SM00829 Enoylreductase AW03_012390 SM00354 helix_turn _helix lactose operon repressor AW03_012410 SM00858 AW03_012410 AW03_012440 SM00382 ATPases associated with a variety of cellular activities AW03_012450 SM00028 Tetratricopeptide repeats AW03_012480 SM00257 Lysin motif AW03_012480 SM00644 AW03_012480 AW03_012530 SM00530 Helix-turn-helix XRE-family like proteins AW03_012560 SM00382 ATPases associated with a variety of cellular activities AW03_012740 SM00257 Lysin motif AW03_012880 SM00257 Lysin motif AW03_012880 SM00644 AW03_012880 AW03_012990 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AW03_013040 SM00382 ATPases associated with a variety of cellular activities AW03_013080 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AW03_013100 SM00382 ATPases associated with a variety of cellular activities AW03_013220 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AW03_013250 SM00347 helix_turn_helix multiple antibiotic resistance protein AW03_013280 SM00855 Phosphoglycerate mutase family AW03_013330 SM00382 ATPases associated with a variety of cellular activities AW03_013360 SM00448 cheY-homologous receiver domain AW03_013360 SM00862 Transcriptional regulatory protein, C terminal AW03_013370 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AW03_013370 SM00387 Histidine kinase-like ATPases AW03_013370 SM00388 His Kinase A (phosphoacceptor) domain AW03_013420 SM00116 Domain in cystathionine beta-synthase and other proteins. AW03_013420 SM00924 MgtE intracellular N domain AW03_013430 SM00422 helix_turn_helix, mercury resistance AW03_013460 SM00347 helix_turn_helix multiple antibiotic resistance protein AW03_013530 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen AW03_013540 SM00052 Putative diguanylate phosphodiesterase AW03_013540 SM00267 diguanylate cyclase AW03_013670 SM00091 PAS domain AW03_013670 SM00387 Histidine kinase-like ATPases AW03_013670 SM00388 His Kinase A (phosphoacceptor) domain AW03_013760 SM01007 Class II Aldolase and Adducin N-terminal domain AW03_013810 SM00387 Histidine kinase-like ATPases AW03_013810 SM00388 His Kinase A (phosphoacceptor) domain AW03_013820 SM00347 helix_turn_helix multiple antibiotic resistance protein AW03_013850 SM00382 ATPases associated with a variety of cellular activities AW03_013850 SM01086 C-terminal, D2-small domain, of ClpB protein AW03_013910 SM00257 Lysin motif AW03_013920 SM00257 Lysin motif AW03_013930 SM00636 AW03_013930 AW03_014020 SM00354 helix_turn _helix lactose operon repressor AW03_014030 SM01061 CAT RNA binding domain AW03_014100 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AW03_014100 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AW03_014140 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AW03_014140 SM00091 PAS domain AW03_014140 SM00387 Histidine kinase-like ATPases AW03_014140 SM00388 His Kinase A (phosphoacceptor) domain AW03_014170 SM00260 Two component signalling adaptor domain AW03_014170 SM00448 cheY-homologous receiver domain AW03_014200 SM00257 Lysin motif AW03_014230 SM00052 Putative diguanylate phosphodiesterase AW03_014430 SM00852 Probable molybdopterin binding domain AW03_014470 SM00382 ATPases associated with a variety of cellular activities AW03_014480 SM00382 ATPases associated with a variety of cellular activities AW03_014510 SM00382 ATPases associated with a variety of cellular activities AW03_014520 SM01066 Carbohydrate binding domain AW03_014530 SM00420 helix_turn_helix, Deoxyribose operon repressor AW03_014530 SM01134 AW03_014530 AW03_014580 SM00382 ATPases associated with a variety of cellular activities AW03_014670 SM00966 SpoVT / AbrB like domain AW03_014680 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AW03_014680 SM00091 PAS domain AW03_014680 SM00387 Histidine kinase-like ATPases AW03_014680 SM00388 His Kinase A (phosphoacceptor) domain AW03_014720 SM00849 Metallo-beta-lactamase superfamily AW03_014790 SM00861 Transketolase, pyrimidine binding domain AW03_014980 SM00838 Elongation factor G C-terminus AW03_015020 SM00670 Large family of predicted nucleotide-binding domains AW03_015070 SM00878 Biotin carboxylase C-terminal domain AW03_015160 SM00116 Domain in cystathionine beta-synthase and other proteins. AW03_015260 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AW03_015390 SM00740 AW03_015390 AW03_015400 SM00740 AW03_015400 AW03_015510 SM00842 Cell division protein FtsA AW03_015520 SM00864 Tubulin/FtsZ family, GTPase domain AW03_015520 SM00865 Tubulin/FtsZ family, C-terminal domain AW03_015570 SM00382 ATPases associated with a variety of cellular activities AW03_015640 SM00363 S4 RNA-binding domain AW03_015690 SM00363 S4 RNA-binding domain AW03_015740 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain AW03_015750 SM00851 MGS-like domain AW03_015750 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AW03_015750 SM01209 AW03_015750 AW03_015780 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family AW03_015890 SM00831 Cation transporter/ATPase, N-terminus AW03_015920 SM00072 Guanylate kinase homologues. AW03_015930 SM01409 AW03_015930 AW03_015950 SM00487 DEAD-like helicases superfamily AW03_015950 SM00490 helicase superfamily c-terminal domain AW03_016000 SM00331 Sigma factor PP2C-like phosphatases AW03_016000 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain AW03_016010 SM00220 Serine/Threonine protein kinases, catalytic domain AW03_016010 SM00740 AW03_016010 AW03_016040 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain AW03_016070 SM01120 AW03_016070 AW03_016070 SM01121 AW03_016070 AW03_016100 SM00487 DEAD-like helicases superfamily AW03_016100 SM00490 helicase superfamily c-terminal domain AW03_016140 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AW03_016150 SM00822 AW03_016150 AW03_016170 SM00358 Double-stranded RNA binding motif AW03_016170 SM00535 Ribonuclease III family AW03_016180 SM00968 SMC proteins Flexible Hinge Domain AW03_016190 SM00382 ATPases associated with a variety of cellular activities AW03_016190 SM00962 SRP54-type protein, GTPase domain AW03_016190 SM00963 SRP54-type protein, helical bundle domain AW03_016220 SM00382 ATPases associated with a variety of cellular activities AW03_016220 SM00962 SRP54-type protein, GTPase domain AW03_016220 SM00963 SRP54-type protein, helical bundle domain AW03_016340 SM00881 CoA binding domain AW03_016360 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain AW03_016360 SM00437 Bacterial DNA topoisomerase I DNA-binding domain AW03_016360 SM00493 AW03_016360 AW03_016400 SM00382 ATPases associated with a variety of cellular activities AW03_016400 SM01086 C-terminal, D2-small domain, of ClpB protein AW03_016480 SM00382 ATPases associated with a variety of cellular activities AW03_016570 SM00448 cheY-homologous receiver domain AW03_016640 SM00962 SRP54-type protein, GTPase domain AW03_016660 SM00448 cheY-homologous receiver domain AW03_016670 SM00073 Histidine Phosphotransfer domain AW03_016670 SM00260 Two component signalling adaptor domain AW03_016670 SM00387 Histidine kinase-like ATPases AW03_016670 SM01231 AW03_016670 AW03_016680 SM00260 Two component signalling adaptor domain AW03_016810 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AW03_016830 SM00479 AW03_016830 AW03_016830 SM00481 DNA polymerase alpha chain like domain AW03_016850 SM00316 Ribosomal protein S1-like RNA-binding domain AW03_016850 SM00322 K homology RNA-binding domain AW03_016920 SM00904 Riboflavin kinase AW03_016930 SM01387 AW03_016930 AW03_016940 SM00316 Ribosomal protein S1-like RNA-binding domain AW03_016940 SM00322 K homology RNA-binding domain AW03_017000 SM00859 Semialdehyde dehydrogenase, NAD binding domain AW03_017020 SM01130 AW03_017020 AW03_017030 SM00849 Metallo-beta-lactamase superfamily AW03_017060 SM00382 ATPases associated with a variety of cellular activities AW03_017060 SM00843 AW03_017060 AW03_017070 SM00345 helix_turn_helix gluconate operon transcriptional repressor AW03_017070 SM00866 AW03_017070 AW03_017140 SM00530 Helix-turn-helix XRE-family like proteins AW03_017160 SM00852 Probable molybdopterin binding domain AW03_017170 SM00382 ATPases associated with a variety of cellular activities AW03_017190 SM00322 K homology RNA-binding domain AW03_017190 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AW03_017220 SM00829 Enoylreductase AW03_017240 SM00729 Elongator protein 3, MiaB family, Radical SAM AW03_017270 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AW03_017270 SM00534 ATPase domain of DNA mismatch repair MUTS family AW03_017280 SM00853 MutL C terminal dimerisation domain AW03_017280 SM01340 AW03_017280 AW03_017320 SM00849 Metallo-beta-lactamase superfamily AW03_017330 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AW03_017340 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AW03_017350 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. AW03_017370 SM00825 Beta-ketoacyl synthase AW03_017410 SM00822 AW03_017410 AW03_017410 SM00823 Phosphopantetheine attachment site AW03_017410 SM00825 Beta-ketoacyl synthase AW03_017410 SM00826 AW03_017410 AW03_017410 SM01294 AW03_017410 AW03_017420 SM00822 AW03_017420 AW03_017420 SM00823 Phosphopantetheine attachment site AW03_017420 SM00825 Beta-ketoacyl synthase AW03_017420 SM00826 AW03_017420 AW03_017420 SM01294 AW03_017420 AW03_017430 SM00822 AW03_017430 AW03_017430 SM00823 Phosphopantetheine attachment site AW03_017430 SM00825 Beta-ketoacyl synthase AW03_017430 SM00826 AW03_017430 AW03_017430 SM01294 AW03_017430 AW03_017440 SM00822 AW03_017440 AW03_017440 SM00823 Phosphopantetheine attachment site AW03_017440 SM00825 Beta-ketoacyl synthase AW03_017440 SM00826 AW03_017440 AW03_017440 SM01294 AW03_017440 AW03_017450 SM00823 Phosphopantetheine attachment site AW03_017450 SM00825 Beta-ketoacyl synthase AW03_017450 SM01294 AW03_017450 AW03_017480 SM00849 Metallo-beta-lactamase superfamily AW03_017650 SM00646 AW03_017650 AW03_017660 SM00382 ATPases associated with a variety of cellular activities AW03_017690 SM00422 helix_turn_helix, mercury resistance AW03_017700 SM01230 AW03_017700 AW03_017800 SM00860 SMI1 / KNR4 family AW03_017950 SM00318 Staphylococcal nuclease homologues AW03_017970 SM01005 Alanine racemase, C-terminal domain AW03_018230 SM00257 Lysin motif AW03_018240 SM00857 Resolvase, N terminal domain AW03_018260 SM00861 Transketolase, pyrimidine binding domain AW03_018300 SM00448 cheY-homologous receiver domain AW03_018450 SM01207 AW03_018450 AW03_018460 SM00881 CoA binding domain AW03_018470 SM00387 Histidine kinase-like ATPases AW03_018470 SM00433 TopoisomeraseII AW03_018480 SM00434 DNA Topoisomerase IV AW03_018510 SM01067 Cellulose binding domain AW03_018550 SM00606 Cellulose Binding Domain Type IV AW03_018640 SM00878 Biotin carboxylase C-terminal domain AW03_018700 SM00823 Phosphopantetheine attachment site AW03_018700 SM00824 Thioesterase AW03_018720 SM00823 Phosphopantetheine attachment site AW03_018730 SM00823 Phosphopantetheine attachment site AW03_018740 SM00823 Phosphopantetheine attachment site AW03_018750 SM00823 Phosphopantetheine attachment site AW03_018840 SM00829 Enoylreductase AW03_018880 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AW03_018910 SM00822 AW03_018910 AW03_018980 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AW03_019020 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AW03_019020 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AW03_019060 SM00656 AW03_019060 AW03_019100 SM00835 Cupin AW03_019150 SM00530 Helix-turn-helix XRE-family like proteins AW03_019290 SM00860 SMI1 / KNR4 family AW03_019310 SM00860 SMI1 / KNR4 family AW03_019350 SM00342 helix_turn_helix, arabinose operon control protein AW03_019380 SM00849 Metallo-beta-lactamase superfamily AW03_019390 SM00871 Bacterial transcription activator, effector binding domain AW03_019420 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AW03_019500 SM00421 helix_turn_helix, Lux Regulon AW03_019500 SM00448 cheY-homologous receiver domain AW03_019510 SM00257 Lysin motif AW03_019520 SM00341 Helicase and RNase D C-terminal AW03_019520 SM00487 DEAD-like helicases superfamily AW03_019520 SM00490 helicase superfamily c-terminal domain AW03_019520 SM00956 AW03_019520 AW03_019690 SM00861 Transketolase, pyrimidine binding domain AW03_019700 SM00327 von Willebrand factor (vWF) type A domain AW03_019710 SM00382 ATPases associated with a variety of cellular activities AW03_019740 SM00257 Lysin motif AW03_019940 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AW03_019940 SM00245 tail specific protease AW03_020010 SM00014 Acid phosphatase homologues AW03_020100 SM00882 Coenzyme A transferase AW03_020110 SM00882 Coenzyme A transferase AW03_020230 SM00347 helix_turn_helix multiple antibiotic resistance protein AW03_020310 SM00382 ATPases associated with a variety of cellular activities AW03_020420 SM00567 E-Z type HEAT repeats AW03_020420 SM00932 Scaffold protein Nfu/NifU N terminal AW03_020430 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AW03_020470 SM00357 Cold shock protein domain AW03_020550 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AW03_020550 SM00475 5'-3' exonuclease AW03_020670 SM00354 helix_turn _helix lactose operon repressor AW03_020700 SM00491 AW03_020700 AW03_020720 SM00981 AW03_020720 AW03_020760 SM00487 DEAD-like helicases superfamily AW03_020760 SM00490 helicase superfamily c-terminal domain AW03_020880 SM00478 endonuclease III AW03_020880 SM00525 AW03_020880 AW03_020940 SM00479 AW03_020940 AW03_020940 SM00487 DEAD-like helicases superfamily AW03_020940 SM00491 AW03_020940 AW03_021020 SM00851 MGS-like domain AW03_021120 SM00914 AW03_021120 AW03_021130 SM00028 Tetratricopeptide repeats AW03_021260 SM00138 Methyltransferase, chemotaxis proteins AW03_021270 SM00562 AW03_021270 AW03_021330 SM00411 bacterial (prokaryotic) histone like domain AW03_021430 SM01240 AW03_021430 AW03_021440 SM00316 Ribosomal protein S1-like RNA-binding domain AW03_021520 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AW03_021560 SM00257 Lysin motif AW03_021580 SM00487 DEAD-like helicases superfamily AW03_021580 SM00490 helicase superfamily c-terminal domain AW03_021660 SM00091 PAS domain AW03_021660 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AW03_021660 SM00387 Histidine kinase-like ATPases AW03_021660 SM00388 His Kinase A (phosphoacceptor) domain AW03_021670 SM00448 cheY-homologous receiver domain AW03_021670 SM00862 Transcriptional regulatory protein, C terminal AW03_021710 SM00363 S4 RNA-binding domain AW03_021990 SM00387 Histidine kinase-like ATPases AW03_022010 SM00936 Penicillin-binding protein 5, C-terminal domain AW03_022090 SM00919 Malic enzyme, NAD binding domain AW03_022090 SM01274 AW03_022090 AW03_022120 SM00870 AW03_022120 AW03_022130 SM00530 Helix-turn-helix XRE-family like proteins AW03_022340 SM00849 Metallo-beta-lactamase superfamily AW03_022400 SM00849 Metallo-beta-lactamase superfamily AW03_022420 SM01350 AW03_022420 AW03_022530 SM00382 ATPases associated with a variety of cellular activities AW03_022550 SM00062 Bacterial periplasmic substrate-binding proteins AW03_022550 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AW03_022570 SM00046 Diacylglycerol kinase catalytic domain (presumed) AW03_022590 SM00422 helix_turn_helix, mercury resistance AW03_022610 SM00861 Transketolase, pyrimidine binding domain AW03_022650 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AW03_022670 SM00091 PAS domain AW03_022670 SM00382 ATPases associated with a variety of cellular activities AW03_022760 SM00646 AW03_022760 AW03_022800 SM00448 cheY-homologous receiver domain AW03_022810 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AW03_022840 SM00363 S4 RNA-binding domain AW03_022850 SM00861 Transketolase, pyrimidine binding domain AW03_022920 SM00878 Biotin carboxylase C-terminal domain AW03_023010 SM00382 ATPases associated with a variety of cellular activities AW03_023030 SM00841 Elongation factor P, C-terminal AW03_023030 SM01185 AW03_023030 AW03_023100 SM00529 Helix-turn-helix diphteria tox regulatory element AW03_023120 SM00450 Rhodanese Homology Domain AW03_023160 SM00487 DEAD-like helicases superfamily AW03_023160 SM00490 helicase superfamily c-terminal domain AW03_023190 SM00530 Helix-turn-helix XRE-family like proteins AW03_023310 SM00382 ATPases associated with a variety of cellular activities AW03_023330 SM01091 Transporter associated domain AW03_023370 SM00849 Metallo-beta-lactamase superfamily AW03_023410 SM00631 AW03_023410 AW03_023450 SM00028 Tetratricopeptide repeats AW03_023530 SM00382 ATPases associated with a variety of cellular activities AW03_023540 SM00382 ATPases associated with a variety of cellular activities AW03_023630 SM00257 Lysin motif AW03_023700 SM00518 AP endonuclease family 2 AW03_023710 SM00487 DEAD-like helicases superfamily AW03_023710 SM00490 helicase superfamily c-terminal domain AW03_023780 SM00400 zinc finger AW03_023780 SM00493 AW03_023780 AW03_023810 SM00116 Domain in cystathionine beta-synthase and other proteins. AW03_023900 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AW03_024010 SM00729 Elongator protein 3, MiaB family, Radical SAM AW03_024040 SM00271 DnaJ molecular chaperone homology domain AW03_024080 SM00729 Elongator protein 3, MiaB family, Radical SAM AW03_024090 SM00838 Elongation factor G C-terminus AW03_024170 SM00849 Metallo-beta-lactamase superfamily AW03_024190 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AW03_024230 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AW03_024250 SM01103 AW03_024250 AW03_024310 SM00644 AW03_024310 AW03_024330 SM01350 AW03_024330 AW03_024390 SM00388 His Kinase A (phosphoacceptor) domain AW03_024400 SM00448 cheY-homologous receiver domain AW03_024400 SM00862 Transcriptional regulatory protein, C terminal AW03_024440 SM00822 AW03_024440 AW03_024450 SM00860 SMI1 / KNR4 family AW03_024490 SM00644 AW03_024490 AW03_024600 SM00347 helix_turn_helix multiple antibiotic resistance protein AW03_024610 SM00450 Rhodanese Homology Domain AW03_024630 SM00028 Tetratricopeptide repeats AW03_024700 SM00422 helix_turn_helix, mercury resistance AW03_024730 SM01091 Transporter associated domain AW03_024840 SM00344 helix_turn_helix ASNC type AW03_025010 SM00287 Bacterial SH3 domain homologues AW03_025090 SM00422 helix_turn_helix, mercury resistance AW03_025110 SM00829 Enoylreductase AW03_025130 SM00640 Glycosyl hydrolases family 32 AW03_025180 SM00382 ATPases associated with a variety of cellular activities AW03_025330 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AW03_025330 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AW03_025390 SM00650 Ribosomal RNA adenine dimethylases AW03_025500 SM00732 Likely ribonuclease with RNase H fold. AW03_025520 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AW03_025540 SM00382 ATPases associated with a variety of cellular activities AW03_025550 SM00062 Bacterial periplasmic substrate-binding proteins AW03_025550 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. AW03_025610 SM00382 ATPases associated with a variety of cellular activities AW03_025620 SM00028 Tetratricopeptide repeats AW03_025660 SM00382 ATPases associated with a variety of cellular activities AW03_025710 SM00287 Bacterial SH3 domain homologues AW03_025710 SM00646 AW03_025710 AW03_025730 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AW03_025730 SM00954 Region found in RelA / SpoT proteins AW03_025830 SM01323 AW03_025830 AW03_025870 SM00382 ATPases associated with a variety of cellular activities AW03_025880 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AW03_025980 SM00257 Lysin motif AW03_026070 SM01317 AW03_026070 AW03_026270 SM00257 Lysin motif AW03_026290 SM01004 Delta-aminolevulinic acid dehydratase AW03_026360 SM00382 ATPases associated with a variety of cellular activities AW03_026360 SM00464 Found in ATP-dependent protease La (LON) AW03_026370 SM00382 ATPases associated with a variety of cellular activities AW03_026380 SM00382 ATPases associated with a variety of cellular activities AW03_026380 SM00994 ClpX C4-type zinc finger AW03_026380 SM01086 C-terminal, D2-small domain, of ClpB protein AW03_026430 SM01329 AW03_026430 AW03_026440 SM00917 LeuA allosteric (dimerisation) domain AW03_026540 SM00909 Sporulation and spore germination AW03_026560 SM00347 helix_turn_helix multiple antibiotic resistance protein AW03_026570 SM00421 helix_turn_helix, Lux Regulon AW03_026640 SM00465 GIY-YIG type nucleases (URI domain) AW03_026660 SM00813 Alpha-L-arabinofuranosidase C-terminus AW03_026680 SM00893 Electron transfer flavoprotein domain AW03_026690 SM00893 Electron transfer flavoprotein domain AW03_026740 SM00463 Small MutS-related domain AW03_026740 SM00533 DNA-binding domain of DNA mismatch repair MUTS family AW03_026740 SM00534 ATPase domain of DNA mismatch repair MUTS family AW03_026750 SM00278 Helix-hairpin-helix DNA-binding motif class 1 AW03_026750 SM00481 DNA polymerase alpha chain like domain AW03_026750 SM00483 DNA polymerase X family AW03_026790 SM00873 B3/4 domain AW03_026790 SM00874 tRNA synthetase B5 domain AW03_026790 SM00896 Ferredoxin-fold anticodon binding domain AW03_026810 SM00967 RNA 2'-O ribose methyltransferase substrate binding AW03_026880 SM00813 Alpha-L-arabinofuranosidase C-terminus AW03_026940 SM01007 Class II Aldolase and Adducin N-terminal domain AW03_027070 SM00448 cheY-homologous receiver domain AW03_027070 SM00850 LytTr DNA-binding domain AW03_027080 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AW03_027080 SM00387 Histidine kinase-like ATPases AW03_027100 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AW03_027130 SM00382 ATPases associated with a variety of cellular activities AW03_027170 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AW03_027230 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain AW03_027230 SM01232 AW03_027230 AW03_027240 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs AW03_027240 SM00474 3'-5' exonuclease AW03_027240 SM00475 5'-3' exonuclease AW03_027240 SM00482 DNA polymerase A domain AW03_027250 SM00091 PAS domain AW03_027250 SM00387 Histidine kinase-like ATPases AW03_027250 SM00388 His Kinase A (phosphoacceptor) domain AW03_027260 SM00448 cheY-homologous receiver domain AW03_027260 SM00862 Transcriptional regulatory protein, C terminal AW03_027280 SM01329 AW03_027280 AW03_027370 SM00919 Malic enzyme, NAD binding domain AW03_027370 SM01274 AW03_027370 AW03_027380 SM00481 DNA polymerase alpha chain like domain AW03_027440 SM00116 Domain in cystathionine beta-synthase and other proteins. AW03_027470 SM00904 Riboflavin kinase AW03_027510 SM00382 ATPases associated with a variety of cellular activities AW03_027540 SM00062 Bacterial periplasmic substrate-binding proteins AW03_027550 SM00062 Bacterial periplasmic substrate-binding proteins AW03_027580 SM00849 Metallo-beta-lactamase superfamily AW03_027630 SM00852 Probable molybdopterin binding domain AW03_027750 SM00981 AW03_027750 AW03_027810 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. AW03_027820 SM00267 diguanylate cyclase AW03_027830 SM00363 S4 RNA-binding domain AW03_027830 SM01390 AW03_027830 AW03_027850 SM00363 S4 RNA-binding domain AW03_027880 SM00116 Domain in cystathionine beta-synthase and other proteins. AW03_027920 SM00354 helix_turn _helix lactose operon repressor AW03_027930 SM00830 Chorismate mutase type II AW03_027980 SM00382 ATPases associated with a variety of cellular activities AW03_027980 SM00843 AW03_027980 AW03_028050 SM00919 Malic enzyme, NAD binding domain AW03_028050 SM01274 AW03_028050 AW03_028060 SM00849 Metallo-beta-lactamase superfamily AW03_028100 SM00642 Alpha-amylase domain AW03_028110 SM00046 Diacylglycerol kinase catalytic domain (presumed) AW03_028180 SM00382 ATPases associated with a variety of cellular activities AW03_028190 SM00420 helix_turn_helix, Deoxyribose operon repressor AW03_028200 SM00363 S4 RNA-binding domain AW03_028300 SM00342 helix_turn_helix, arabinose operon control protein AW03_028350 SM00729 Elongator protein 3, MiaB family, Radical SAM AW03_028350 SM00876 Biotin and Thiamin Synthesis associated domain AW03_028410 SM00354 helix_turn _helix lactose operon repressor AW03_028460 SM00450 Rhodanese Homology Domain AW03_028490 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AW03_028490 SM00091 PAS domain AW03_028530 SM00382 ATPases associated with a variety of cellular activities AW03_028540 SM00387 Histidine kinase-like ATPases AW03_028550 SM00448 cheY-homologous receiver domain AW03_028550 SM00862 Transcriptional regulatory protein, C terminal AW03_028570 SM00382 ATPases associated with a variety of cellular activities AW03_028600 SM00382 ATPases associated with a variety of cellular activities AW03_028610 SM00345 helix_turn_helix gluconate operon transcriptional repressor AW03_028640 SM00729 Elongator protein 3, MiaB family, Radical SAM AW03_028760 SM00382 ATPases associated with a variety of cellular activities AW03_028840 SM00947 Carbonic anhydrase AW03_028910 SM00382 ATPases associated with a variety of cellular activities AW03_028930 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain AW03_029010 SM00984 UDP binding domain AW03_029130 SM00642 Alpha-amylase domain AW03_029180 SM00244 prohibitin homologues AW03_029290 SM00047 Lysozyme subfamily 2 AW03_029380 SM00420 helix_turn_helix, Deoxyribose operon repressor AW03_029380 SM01134 AW03_029380 AW03_029390 SM01007 Class II Aldolase and Adducin N-terminal domain AW03_029400 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AW03_029400 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AW03_029400 SM00319 Homologues of the ligand binding domain of Tar AW03_029410 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AW03_029410 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AW03_029410 SM00319 Homologues of the ligand binding domain of Tar AW03_029420 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AW03_029420 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AW03_029420 SM00319 Homologues of the ligand binding domain of Tar AW03_029430 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). AW03_029430 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AW03_029430 SM00319 Homologues of the ligand binding domain of Tar AW03_029470 SM00642 Alpha-amylase domain AW03_029480 SM00116 Domain in cystathionine beta-synthase and other proteins. AW03_029480 SM01091 Transporter associated domain AW03_029590 SM00316 Ribosomal protein S1-like RNA-binding domain AW03_029610 SM00344 helix_turn_helix ASNC type AW03_029650 SM00387 Histidine kinase-like ATPases AW03_029650 SM00388 His Kinase A (phosphoacceptor) domain AW03_029660 SM01298 AW03_029660 AW03_029670 SM00479 AW03_029670 AW03_029730 SM00091 PAS domain AW03_029730 SM00387 Histidine kinase-like ATPases AW03_029740 SM00448 cheY-homologous receiver domain AW03_029760 SM00382 ATPases associated with a variety of cellular activities AW03_029890 SM00421 helix_turn_helix, Lux Regulon AW03_029890 SM00448 cheY-homologous receiver domain AW03_029900 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AW03_029900 SM00387 Histidine kinase-like ATPases AW03_029950 SM00052 Putative diguanylate phosphodiesterase AW03_030050 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AW03_030140 SM01002 Alanine dehydrogenase/PNT, C-terminal domain AW03_030140 SM01003 Alanine dehydrogenase/PNT, N-terminal domain AW03_030160 SM00923 MbtH-like protein AW03_030170 SM00823 Phosphopantetheine attachment site AW03_030170 SM00824 Thioesterase AW03_030330 SM01240 AW03_030330 AW03_030530 SM00729 Elongator protein 3, MiaB family, Radical SAM AW03_030680 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AW03_030760 SM00382 ATPases associated with a variety of cellular activities AW03_030770 SM00345 helix_turn_helix gluconate operon transcriptional repressor AW03_030770 SM00866 AW03_030770 AW03_030830 SM00465 GIY-YIG type nucleases (URI domain) AW03_030920 SM00382 ATPases associated with a variety of cellular activities AW03_030960 SM00382 ATPases associated with a variety of cellular activities AW03_030960 SM00930 AW03_030960 AW03_030990 SM00493 AW03_030990 AW03_031100 SM00347 helix_turn_helix multiple antibiotic resistance protein AW03_031160 SM00382 ATPases associated with a variety of cellular activities AW03_031210 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AW03_031220 SM00448 cheY-homologous receiver domain AW03_031220 SM00862 Transcriptional regulatory protein, C terminal AW03_031230 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AW03_031230 SM00387 Histidine kinase-like ATPases AW03_031230 SM00388 His Kinase A (phosphoacceptor) domain AW03_031300 SM00421 helix_turn_helix, Lux Regulon AW03_031300 SM00448 cheY-homologous receiver domain AW03_031310 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AW03_031310 SM00387 Histidine kinase-like ATPases AW03_031380 SM00382 ATPases associated with a variety of cellular activities AW03_031430 SM00387 Histidine kinase-like ATPases AW03_031430 SM00388 His Kinase A (phosphoacceptor) domain AW03_031440 SM00448 cheY-homologous receiver domain AW03_031440 SM00862 Transcriptional regulatory protein, C terminal AW03_031480 SM00835 Cupin AW03_031510 SM00382 ATPases associated with a variety of cellular activities AW03_031530 SM00382 ATPases associated with a variety of cellular activities AW03_031860 SM00316 Ribosomal protein S1-like RNA-binding domain AW03_031860 SM00357 Cold shock protein domain AW03_031860 SM00955 AW03_031860 AW03_031900 SM00530 Helix-turn-helix XRE-family like proteins AW03_031910 SM00530 Helix-turn-helix XRE-family like proteins AW03_031920 SM00530 Helix-turn-helix XRE-family like proteins AW03_032010 SM00116 Domain in cystathionine beta-synthase and other proteins. AW03_032010 SM00382 ATPases associated with a variety of cellular activities AW03_032060 SM00116 Domain in cystathionine beta-synthase and other proteins. AW03_032060 SM00382 ATPases associated with a variety of cellular activities AW03_032210 SM00984 UDP binding domain AW03_032230 SM01192 AW03_032230 AW03_032230 SM01193 AW03_032230 AW03_032270 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AW03_032300 SM00345 helix_turn_helix gluconate operon transcriptional repressor AW03_032350 SM00636 AW03_032350 AW03_032390 SM00421 helix_turn_helix, Lux Regulon AW03_032390 SM00448 cheY-homologous receiver domain AW03_032420 SM00382 ATPases associated with a variety of cellular activities AW03_032440 SM00331 Sigma factor PP2C-like phosphatases AW03_032500 SM00354 helix_turn _helix lactose operon repressor AW03_032510 SM00345 helix_turn_helix gluconate operon transcriptional repressor AW03_032510 SM00895 AW03_032510 AW03_032700 SM00530 Helix-turn-helix XRE-family like proteins AW03_032800 SM00640 Glycosyl hydrolases family 32 AW03_032870 SM00752 Horizontally Transferred TransMembrane Domain AW03_032930 SM00642 Alpha-amylase domain AW03_032990 SM00642 Alpha-amylase domain AW03_033000 SM00354 helix_turn _helix lactose operon repressor AW03_033040 SM00947 Carbonic anhydrase AW03_033070 SM00382 ATPases associated with a variety of cellular activities AW03_033080 SM00387 Histidine kinase-like ATPases AW03_033090 SM00448 cheY-homologous receiver domain AW03_033090 SM00862 Transcriptional regulatory protein, C terminal AW03_033190 SM00028 Tetratricopeptide repeats AW03_033200 SM00382 ATPases associated with a variety of cellular activities AW03_033420 SM00345 helix_turn_helix gluconate operon transcriptional repressor AW03_033420 SM00866 AW03_033420 AW03_033500 SM00382 ATPases associated with a variety of cellular activities AW03_033510 SM00487 DEAD-like helicases superfamily AW03_033510 SM00490 helicase superfamily c-terminal domain AW03_033560 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AW03_033580 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AW03_033580 SM00245 tail specific protease AW03_033600 SM00382 ATPases associated with a variety of cellular activities AW03_033630 SM00937 AW03_033630 AW03_033640 SM00957 SecA DEAD-like domain AW03_033640 SM00958 SecA preprotein cross-linking domain AW03_033820 SM00487 DEAD-like helicases superfamily AW03_033820 SM00490 helicase superfamily c-terminal domain AW03_033840 SM00421 helix_turn_helix, Lux Regulon AW03_033840 SM00448 cheY-homologous receiver domain AW03_033850 SM00387 Histidine kinase-like ATPases AW03_033930 SM00984 UDP binding domain AW03_033980 SM00646 AW03_033980 AW03_034070 SM00382 ATPases associated with a variety of cellular activities AW03_034210 SM00047 Lysozyme subfamily 2 AW03_034210 SM00287 Bacterial SH3 domain homologues AW03_034310 SM00854 Bacterial capsule synthesis protein PGA_cap AW03_034340 SM00354 helix_turn _helix lactose operon repressor AW03_034370 SM00382 ATPases associated with a variety of cellular activities AW03_034400 SM00287 Bacterial SH3 domain homologues AW03_034520 SM00903 Flavin reductase like domain AW03_034550 SM00344 helix_turn_helix ASNC type AW03_034670 SM00984 UDP binding domain AW03_034730 SM00487 DEAD-like helicases superfamily AW03_034730 SM00490 helicase superfamily c-terminal domain AW03_034750 SM00420 helix_turn_helix, Deoxyribose operon repressor AW03_034750 SM01134 AW03_034750 AW03_034810 SM00448 cheY-homologous receiver domain AW03_034810 SM00862 Transcriptional regulatory protein, C terminal AW03_034820 SM00387 Histidine kinase-like ATPases AW03_034820 SM00388 His Kinase A (phosphoacceptor) domain AW03_034820 SM00448 cheY-homologous receiver domain AW03_034850 SM00028 Tetratricopeptide repeats AW03_034900 SM00347 helix_turn_helix multiple antibiotic resistance protein AW03_034920 SM00710 Parallel beta-helix repeats AW03_034920 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses AW03_034980 SM00938 Nitrogen regulatory protein P-II AW03_034990 SM00014 Acid phosphatase homologues AW03_035060 SM00155 Phospholipase D. Active site motifs. AW03_035070 SM00422 helix_turn_helix, mercury resistance AW03_035170 SM00028 Tetratricopeptide repeats AW03_035180 SM00729 Elongator protein 3, MiaB family, Radical SAM AW03_035210 SM00327 von Willebrand factor (vWF) type A domain AW03_035220 SM00327 von Willebrand factor (vWF) type A domain AW03_035290 SM00382 ATPases associated with a variety of cellular activities AW03_035410 SM00226 Low molecular weight phosphatase family AW03_035490 SM00937 AW03_035490 AW03_035530 SM00919 Malic enzyme, NAD binding domain AW03_035530 SM01274 AW03_035530 AW03_035560 SM00357 Cold shock protein domain AW03_035560 SM00382 ATPases associated with a variety of cellular activities AW03_035560 SM00959 Rho termination factor, N-terminal domain AW03_035610 SM00448 cheY-homologous receiver domain AW03_035670 SM00155 Phospholipase D. Active site motifs. AW03_035710 SM00382 ATPases associated with a variety of cellular activities AW03_035720 SM00155 Phospholipase D. Active site motifs. AW03_035760 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AW03_035790 SM00100 Cyclic nucleotide-monophosphate binding domain AW03_035790 SM00419 helix_turn_helix, cAMP Regulatory protein AW03_035810 SM00836 DALR anticodon binding domain AW03_035810 SM01016 Arginyl tRNA synthetase N terminal dom AW03_035840 SM00729 Elongator protein 3, MiaB family, Radical SAM AW03_035930 SM00028 Tetratricopeptide repeats AW03_035990 SM00382 ATPases associated with a variety of cellular activities AW03_036070 SM00347 helix_turn_helix multiple antibiotic resistance protein AW03_036080 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain AW03_036130 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. AW03_036320 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AW03_036400 SM00858 AW03_036400 AW03_036500 SM00986 Uracil DNA glycosylase superfamily AW03_036500 SM00987 UreE urease accessory protein, C-terminal domain AW03_036540 SM00640 Glycosyl hydrolases family 32 AW03_036570 SM01061 CAT RNA binding domain AW03_036870 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase AW03_036940 SM01061 CAT RNA binding domain AW03_036970 SM00347 helix_turn_helix multiple antibiotic resistance protein AW03_036980 SM00363 S4 RNA-binding domain AW03_037000 SM00954 Region found in RelA / SpoT proteins AW03_037160 SM01060 AW03_037160 AW03_037190 SM00382 ATPases associated with a variety of cellular activities AW03_037260 SM00382 ATPases associated with a variety of cellular activities AW03_037270 SM00382 ATPases associated with a variety of cellular activities AW03_037340 SM00382 ATPases associated with a variety of cellular activities AW03_037440 SM00421 helix_turn_helix, Lux Regulon AW03_037440 SM00448 cheY-homologous receiver domain AW03_037510 SM00822 AW03_037510 AW03_037520 SM00882 Coenzyme A transferase AW03_037530 SM00882 Coenzyme A transferase AW03_037590 SM01060 AW03_037590 AW03_037620 SM01061 CAT RNA binding domain AW03_037650 SM00487 DEAD-like helicases superfamily AW03_037650 SM00490 helicase superfamily c-terminal domain AW03_037840 SM00487 DEAD-like helicases superfamily AW03_037840 SM00490 helicase superfamily c-terminal domain AW03_037940 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain AW03_037960 SM01133 AW03_037960 AW03_038020 SM00382 ATPases associated with a variety of cellular activities AW03_038040 SM00062 Bacterial periplasmic substrate-binding proteins AW03_038170 SM00382 ATPases associated with a variety of cellular activities AW03_038180 SM00387 Histidine kinase-like ATPases AW03_038190 SM00448 cheY-homologous receiver domain AW03_038190 SM00862 Transcriptional regulatory protein, C terminal AW03_038300 SM00420 helix_turn_helix, Deoxyribose operon repressor AW03_038300 SM01134 AW03_038300 AW03_038350 SM00387 Histidine kinase-like ATPases AW03_038410 SM00564 beta-propeller repeat AW03_038480 SM00347 helix_turn_helix multiple antibiotic resistance protein AW03_038530 SM00345 helix_turn_helix gluconate operon transcriptional repressor AW03_038530 SM00895 AW03_038530 AW03_038560 SM01350 AW03_038560 AW03_038620 SM00345 helix_turn_helix gluconate operon transcriptional repressor AW03_038620 SM00866 AW03_038620 AW03_038650 SM00382 ATPases associated with a variety of cellular activities AW03_038670 SM00487 DEAD-like helicases superfamily AW03_038850 SM00091 PAS domain AW03_038850 SM00382 ATPases associated with a variety of cellular activities AW03_038860 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. AW03_038870 SM00849 Metallo-beta-lactamase superfamily AW03_038900 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) AW03_038900 SM00091 PAS domain AW03_038900 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain AW03_038900 SM00387 Histidine kinase-like ATPases AW03_038900 SM00388 His Kinase A (phosphoacceptor) domain AW03_038910 SM00448 cheY-homologous receiver domain AW03_038910 SM00862 Transcriptional regulatory protein, C terminal AW03_038920 SM00788 Adenylosuccinate synthetase AW03_038940 SM00382 ATPases associated with a variety of cellular activities AW03_039010 SM00267 diguanylate cyclase AW03_039060 SM01131 AW03_039060 AW03_039100 SM00422 helix_turn_helix, mercury resistance AW03_039210 SM00849 Metallo-beta-lactamase superfamily AW03_039220 SM00347 helix_turn_helix multiple antibiotic resistance protein AW03_039300 SM00226 Low molecular weight phosphatase family AW03_039330 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor AW03_039340 SM00530 Helix-turn-helix XRE-family like proteins AW03_039350 SM00825 Beta-ketoacyl synthase AW03_039420 SM01266 AW03_039420 AW03_039440 SM00354 helix_turn _helix lactose operon repressor AW03_039500 SM00926 Molybdopterin oxidoreductase Fe4S4 domain AW03_039540 SM00470 ParB-like nuclease domain AW03_039570 SM00470 ParB-like nuclease domain AW03_039590 SM01228 AW03_039590 AW03_039610 SM00322 K homology RNA-binding domain AW03_039610 SM00393 Putative single-stranded nucleic acids-binding domain AW03_039610 SM01245 AW03_039610