QX56_00005 SM00382 ATPases associated with a variety of cellular activities QX56_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain QX56_00010 SM00480 DNA polymerase III beta subunit QX56_00030 SM00387 Histidine kinase-like ATPases QX56_00030 SM00433 TopoisomeraseII QX56_00035 SM00434 DNA Topoisomerase IV QX56_00070 SM00116 Domain in cystathionine beta-synthase and other proteins. QX56_00070 SM01240 QX56_00070 QX56_00075 SM00936 Penicillin-binding protein 5, C-terminal domain QX56_00110 SM00257 Lysin motif QX56_00110 SM00636 QX56_00110 QX56_00125 SM00382 ATPases associated with a variety of cellular activities QX56_00135 SM00493 QX56_00135 QX56_00230 SM00465 GIY-YIG type nucleases (URI domain) QX56_00240 SM00966 SpoVT / AbrB like domain QX56_00255 SM01208 QX56_00255 QX56_00260 SM00493 QX56_00260 QX56_00265 SM00650 Ribosomal RNA adenine dimethylases QX56_00315 SM01400 QX56_00315 QX56_00335 SM00487 DEAD-like helicases superfamily QX56_00335 SM00490 helicase superfamily c-terminal domain QX56_00335 SM00982 QX56_00335 QX56_00335 SM01058 CarD-like/TRCF domain QX56_00340 SM00966 SpoVT / AbrB like domain QX56_00355 SM00363 S4 RNA-binding domain QX56_00375 SM00316 Ribosomal protein S1-like RNA-binding domain QX56_00390 SM00331 Sigma factor PP2C-like phosphatases QX56_00390 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain QX56_00400 SM00220 Serine/Threonine protein kinases, catalytic domain QX56_00405 SM00977 TilS substrate C-terminal domain QX56_00415 SM00382 ATPases associated with a variety of cellular activities QX56_00460 SM00905 Dihydroneopterin aldolase QX56_00470 SM00530 Helix-turn-helix XRE-family like proteins QX56_00580 SM00382 ATPases associated with a variety of cellular activities QX56_00580 SM01086 C-terminal, D2-small domain, of ClpB protein QX56_00585 SM00382 ATPases associated with a variety of cellular activities QX56_00595 SM00670 Large family of predicted nucleotide-binding domains QX56_00625 SM00840 QX56_00625 QX56_00630 SM00535 Ribonuclease III family QX56_00635 SM00967 RNA 2'-O ribose methyltransferase substrate binding QX56_00660 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. QX56_00660 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. QX56_00665 SM00649 Ribosomal protein L11/L12 QX56_00695 SM00663 RNA polymerase I subunit A N-terminus QX56_00715 SM00838 Elongation factor G C-terminus QX56_00715 SM00889 Elongation factor G, domain IV QX56_00730 SM01403 QX56_00730 QX56_00750 SM01382 QX56_00750 QX56_00750 SM01383 QX56_00750 QX56_00765 SM00322 K homology RNA-binding domain QX56_00785 SM01374 QX56_00785 QX56_00790 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. QX56_00855 SM00316 Ribosomal protein S1-like RNA-binding domain QX56_00875 SM00662 RNA polymerases D QX56_00885 SM00382 ATPases associated with a variety of cellular activities QX56_00890 SM00382 ATPases associated with a variety of cellular activities QX56_00925 SM00646 QX56_00925 QX56_00940 SM01251 QX56_00940 QX56_01060 SM00342 helix_turn_helix, arabinose operon control protein QX56_01160 SM00478 endonuclease III QX56_01165 SM00342 helix_turn_helix, arabinose operon control protein QX56_01205 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor QX56_01225 SM00729 Elongator protein 3, MiaB family, Radical SAM QX56_01235 SM00382 ATPases associated with a variety of cellular activities QX56_01260 SM00448 cheY-homologous receiver domain QX56_01260 SM00862 Transcriptional regulatory protein, C terminal QX56_01265 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QX56_01265 SM00388 His Kinase A (phosphoacceptor) domain QX56_01340 SM00347 helix_turn_helix multiple antibiotic resistance protein QX56_01370 SM00342 helix_turn_helix, arabinose operon control protein QX56_01420 SM00342 helix_turn_helix, arabinose operon control protein QX56_01425 SM00450 Rhodanese Homology Domain QX56_01445 SM00345 helix_turn_helix gluconate operon transcriptional repressor QX56_01445 SM00866 QX56_01445 QX56_01485 SM00387 Histidine kinase-like ATPases QX56_01490 SM00448 cheY-homologous receiver domain QX56_01495 SM01130 QX56_01495 QX56_01510 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain QX56_01515 SM00345 helix_turn_helix gluconate operon transcriptional repressor QX56_01515 SM00895 QX56_01515 QX56_01520 SM00858 QX56_01520 QX56_01540 SM00448 cheY-homologous receiver domain QX56_01540 SM00862 Transcriptional regulatory protein, C terminal QX56_01545 SM00387 Histidine kinase-like ATPases QX56_01545 SM00388 His Kinase A (phosphoacceptor) domain QX56_01550 SM00382 ATPases associated with a variety of cellular activities QX56_01575 SM00327 von Willebrand factor (vWF) type A domain QX56_01620 SM00870 QX56_01620 QX56_01640 SM00387 Histidine kinase-like ATPases QX56_01645 SM00448 cheY-homologous receiver domain QX56_01645 SM00850 LytTr DNA-binding domain QX56_01650 SM00382 ATPases associated with a variety of cellular activities QX56_01685 SM00028 Tetratricopeptide repeats QX56_01695 SM00642 Alpha-amylase domain QX56_01705 SM00382 ATPases associated with a variety of cellular activities QX56_01760 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor QX56_01765 SM00116 Domain in cystathionine beta-synthase and other proteins. QX56_01765 SM00382 ATPases associated with a variety of cellular activities QX56_01800 SM00632 QX56_01800 QX56_01800 SM00642 Alpha-amylase domain QX56_01820 SM00347 helix_turn_helix multiple antibiotic resistance protein QX56_01935 SM00926 Molybdopterin oxidoreductase Fe4S4 domain QX56_01965 SM00833 Cobalamin synthesis protein cobW C-terminal domain QX56_01975 SM00062 Bacterial periplasmic substrate-binding proteins QX56_02010 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QX56_02010 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QX56_02020 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family QX56_02035 SM00823 Phosphopantetheine attachment site QX56_02035 SM01294 QX56_02035 QX56_02040 SM00823 Phosphopantetheine attachment site QX56_02040 SM01294 QX56_02040 QX56_02045 SM00823 Phosphopantetheine attachment site QX56_02070 SM00345 helix_turn_helix gluconate operon transcriptional repressor QX56_02085 SM00382 ATPases associated with a variety of cellular activities QX56_02095 SM00062 Bacterial periplasmic substrate-binding proteins QX56_02135 SM00710 Parallel beta-helix repeats QX56_02135 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses QX56_02160 SM00382 ATPases associated with a variety of cellular activities QX56_02170 SM00448 cheY-homologous receiver domain QX56_02170 SM00862 Transcriptional regulatory protein, C terminal QX56_02175 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QX56_02175 SM00387 Histidine kinase-like ATPases QX56_02175 SM00388 His Kinase A (phosphoacceptor) domain QX56_02180 SM00028 Tetratricopeptide repeats QX56_02215 SM00382 ATPases associated with a variety of cellular activities QX56_02245 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor QX56_02250 SM00345 helix_turn_helix gluconate operon transcriptional repressor QX56_02285 SM00420 helix_turn_helix, Deoxyribose operon repressor QX56_02310 SM01329 QX56_02310 QX56_02360 SM00796 Allophanate hydrolase subunit 1 QX56_02365 SM00797 Allophanate hydrolase subunit 2 QX56_02370 SM00346 helix_turn_helix isocitrate lyase regulation QX56_02445 SM00344 helix_turn_helix ASNC type QX56_02450 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain QX56_02450 SM00437 Bacterial DNA topoisomerase I DNA-binding domain QX56_02450 SM00493 QX56_02450 QX56_02460 SM00267 diguanylate cyclase QX56_02550 SM00091 PAS domain QX56_02550 SM00387 Histidine kinase-like ATPases QX56_02555 SM00448 cheY-homologous receiver domain QX56_02575 SM00382 ATPases associated with a variety of cellular activities QX56_02625 SM00487 DEAD-like helicases superfamily QX56_02625 SM00490 helicase superfamily c-terminal domain QX56_02655 SM01005 Alanine racemase, C-terminal domain QX56_02680 SM00387 Histidine kinase-like ATPases QX56_02685 SM00331 Sigma factor PP2C-like phosphatases QX56_02705 SM00331 Sigma factor PP2C-like phosphatases QX56_02705 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain QX56_02725 SM00347 helix_turn_helix multiple antibiotic resistance protein QX56_02730 SM00316 Ribosomal protein S1-like RNA-binding domain QX56_02730 SM00732 Likely ribonuclease with RNase H fold. QX56_02740 SM00731 SprT homologues. QX56_02790 SM00530 Helix-turn-helix XRE-family like proteins QX56_02885 SM00255 Toll - interleukin 1 - resistance QX56_02890 SM00028 Tetratricopeptide repeats QX56_02905 SM00344 helix_turn_helix ASNC type QX56_02910 SM00344 helix_turn_helix ASNC type QX56_02950 SM00357 Cold shock protein domain QX56_02955 SM01058 CarD-like/TRCF domain QX56_02965 SM00342 helix_turn_helix, arabinose operon control protein QX56_02975 SM00342 helix_turn_helix, arabinose operon control protein QX56_02975 SM00871 Bacterial transcription activator, effector binding domain QX56_02980 SM00345 helix_turn_helix gluconate operon transcriptional repressor QX56_03010 SM00345 helix_turn_helix gluconate operon transcriptional repressor QX56_03060 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor QX56_03085 SM00345 helix_turn_helix gluconate operon transcriptional repressor QX56_03095 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor QX56_03115 SM00387 Histidine kinase-like ATPases QX56_03120 SM00421 helix_turn_helix, Lux Regulon QX56_03120 SM00448 cheY-homologous receiver domain QX56_03140 SM00422 helix_turn_helix, mercury resistance QX56_03140 SM00871 Bacterial transcription activator, effector binding domain QX56_03225 SM00382 ATPases associated with a variety of cellular activities QX56_03240 SM00347 helix_turn_helix multiple antibiotic resistance protein QX56_03255 SM00347 helix_turn_helix multiple antibiotic resistance protein QX56_03255 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor QX56_03270 SM00345 helix_turn_helix gluconate operon transcriptional repressor QX56_03270 SM00895 QX56_03270 QX56_03275 SM00257 Lysin motif QX56_03275 SM00636 QX56_03275 QX56_03290 SM00098 Alkaline phosphatase homologues QX56_03310 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. QX56_03345 SM00345 helix_turn_helix gluconate operon transcriptional repressor QX56_03345 SM00866 QX56_03345 QX56_03430 SM00382 ATPases associated with a variety of cellular activities QX56_03440 SM00881 CoA binding domain QX56_03465 SM00883 Chaperonin 10 Kd subunit QX56_03550 SM00028 Tetratricopeptide repeats QX56_03550 SM00382 ATPases associated with a variety of cellular activities QX56_03555 SM00829 Enoylreductase QX56_03600 SM00829 Enoylreductase QX56_03665 SM00460 Transglutaminase/protease-like homologues QX56_03700 SM01001 AIR carboxylase QX56_03710 SM00998 Adenylosuccinate lyase C-terminus QX56_03725 SM01211 QX56_03725 QX56_03750 SM00798 AICARFT/IMPCHase bienzyme QX56_03750 SM00851 MGS-like domain QX56_03755 SM01209 QX56_03755 QX56_03755 SM01210 QX56_03755 QX56_03760 SM00344 helix_turn_helix ASNC type QX56_03810 SM00278 Helix-hairpin-helix DNA-binding motif class 1 QX56_03810 SM00292 breast cancer carboxy-terminal domain QX56_03810 SM00532 Ligase N family QX56_03845 SM00845 GatB domain QX56_03860 SM00046 Diacylglycerol kinase catalytic domain (presumed) QX56_03885 SM00487 DEAD-like helicases superfamily QX56_03890 SM00974 QX56_03890 QX56_03920 SM00028 Tetratricopeptide repeats QX56_03985 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QX56_03985 SM00387 Histidine kinase-like ATPases QX56_03990 SM00342 helix_turn_helix, arabinose operon control protein QX56_03990 SM00448 cheY-homologous receiver domain QX56_04015 SM00342 helix_turn_helix, arabinose operon control protein QX56_04120 SM00347 helix_turn_helix multiple antibiotic resistance protein QX56_04190 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QX56_04195 SM00382 ATPases associated with a variety of cellular activities QX56_04205 SM00422 helix_turn_helix, mercury resistance QX56_04225 SM00382 ATPases associated with a variety of cellular activities QX56_04230 SM00487 DEAD-like helicases superfamily QX56_04230 SM00490 helicase superfamily c-terminal domain QX56_04240 SM00829 Enoylreductase QX56_04265 SM00382 ATPases associated with a variety of cellular activities QX56_04295 SM00656 QX56_04295 QX56_04305 SM00387 Histidine kinase-like ATPases QX56_04310 SM00448 cheY-homologous receiver domain QX56_04330 SM00849 Metallo-beta-lactamase superfamily QX56_04415 SM00642 Alpha-amylase domain QX56_04420 SM00345 helix_turn_helix gluconate operon transcriptional repressor QX56_04420 SM00866 QX56_04420 QX56_04450 SM00226 Low molecular weight phosphatase family QX56_04520 SM00478 endonuclease III QX56_04555 SM00861 Transketolase, pyrimidine binding domain QX56_04570 SM00382 ATPases associated with a variety of cellular activities QX56_04625 SM00382 ATPases associated with a variety of cellular activities QX56_04630 SM00382 ATPases associated with a variety of cellular activities QX56_04645 SM00342 helix_turn_helix, arabinose operon control protein QX56_04665 SM00387 Histidine kinase-like ATPases QX56_04670 SM00421 helix_turn_helix, Lux Regulon QX56_04670 SM00448 cheY-homologous receiver domain QX56_04675 SM00382 ATPases associated with a variety of cellular activities QX56_04725 SM00347 helix_turn_helix multiple antibiotic resistance protein QX56_04805 SM00287 Bacterial SH3 domain homologues QX56_04835 SM00478 endonuclease III QX56_04835 SM00525 QX56_04835 QX56_04865 SM00382 ATPases associated with a variety of cellular activities QX56_05035 SM01060 QX56_05035 QX56_05040 SM00382 ATPases associated with a variety of cellular activities QX56_05045 SM00062 Bacterial periplasmic substrate-binding proteins QX56_05075 SM00530 Helix-turn-helix XRE-family like proteins QX56_05090 SM00567 E-Z type HEAT repeats QX56_05120 SM00763 PrkA AAA domain QX56_05135 SM00347 helix_turn_helix multiple antibiotic resistance protein QX56_05165 SM00345 helix_turn_helix gluconate operon transcriptional repressor QX56_05170 SM00382 ATPases associated with a variety of cellular activities QX56_05175 SM00382 ATPases associated with a variety of cellular activities QX56_05185 SM00357 Cold shock protein domain QX56_05200 SM00267 diguanylate cyclase QX56_05230 SM00318 Staphylococcal nuclease homologues QX56_05240 SM00363 S4 RNA-binding domain QX56_05250 SM00116 Domain in cystathionine beta-synthase and other proteins. QX56_05295 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. QX56_05295 SM00387 Histidine kinase-like ATPases QX56_05300 SM00421 helix_turn_helix, Lux Regulon QX56_05300 SM00448 cheY-homologous receiver domain QX56_05320 SM00257 Lysin motif QX56_05340 SM00098 Alkaline phosphatase homologues QX56_05345 SM00257 Lysin motif QX56_05375 SM00345 helix_turn_helix gluconate operon transcriptional repressor QX56_05405 SM00563 Phosphate acyltransferases QX56_05410 SM01091 Transporter associated domain QX56_05415 SM00422 helix_turn_helix, mercury resistance QX56_05425 SM01091 Transporter associated domain QX56_05485 SM00382 ATPases associated with a variety of cellular activities QX56_05490 SM00382 ATPases associated with a variety of cellular activities QX56_05540 SM00729 Elongator protein 3, MiaB family, Radical SAM QX56_05570 SM00382 ATPases associated with a variety of cellular activities QX56_05590 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. QX56_05625 SM00347 helix_turn_helix multiple antibiotic resistance protein QX56_05655 SM00382 ATPases associated with a variety of cellular activities QX56_05740 SM01022 QX56_05740 QX56_05755 SM00849 Metallo-beta-lactamase superfamily QX56_05795 SM00829 Enoylreductase QX56_05805 SM00855 Phosphoglycerate mutase family QX56_05825 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QX56_05840 SM00914 QX56_05840 QX56_05855 SM00894 Excalibur calcium-binding domain QX56_05890 SM00347 helix_turn_helix multiple antibiotic resistance protein QX56_05915 SM00354 helix_turn _helix lactose operon repressor QX56_06055 SM00342 helix_turn_helix, arabinose operon control protein QX56_06060 SM00354 helix_turn _helix lactose operon repressor QX56_06080 SM00345 helix_turn_helix gluconate operon transcriptional repressor QX56_06125 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain QX56_06155 SM00316 Ribosomal protein S1-like RNA-binding domain QX56_06165 SM00752 Horizontally Transferred TransMembrane Domain QX56_06250 SM00859 Semialdehyde dehydrogenase, NAD binding domain QX56_06270 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain QX56_06275 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain QX56_06325 SM00825 Beta-ketoacyl synthase QX56_06335 SM00382 ATPases associated with a variety of cellular activities QX56_06340 SM00382 ATPases associated with a variety of cellular activities QX56_06385 SM00382 ATPases associated with a variety of cellular activities QX56_06390 SM00382 ATPases associated with a variety of cellular activities QX56_06455 SM01118 QX56_06455 QX56_06465 SM00954 Region found in RelA / SpoT proteins QX56_06690 SM00635 Bacterial Ig-like domain 2 QX56_06785 SM00926 Molybdopterin oxidoreductase Fe4S4 domain QX56_06785 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region QX56_06835 SM00382 ATPases associated with a variety of cellular activities QX56_06845 SM00835 Cupin QX56_06875 SM00829 Enoylreductase QX56_06895 SM00354 helix_turn _helix lactose operon repressor QX56_06905 SM00858 QX56_06905 QX56_06920 SM00382 ATPases associated with a variety of cellular activities QX56_06925 SM00028 Tetratricopeptide repeats QX56_06940 SM00257 Lysin motif QX56_06940 SM00644 QX56_06940 QX56_06965 SM00530 Helix-turn-helix XRE-family like proteins QX56_06980 SM00382 ATPases associated with a variety of cellular activities QX56_07085 SM00257 Lysin motif QX56_07150 SM00257 Lysin motif QX56_07150 SM00644 QX56_07150 QX56_07200 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. QX56_07225 SM00382 ATPases associated with a variety of cellular activities QX56_07240 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain QX56_07250 SM00382 ATPases associated with a variety of cellular activities QX56_07310 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase QX56_07325 SM00347 helix_turn_helix multiple antibiotic resistance protein QX56_07365 SM00382 ATPases associated with a variety of cellular activities QX56_07380 SM00448 cheY-homologous receiver domain QX56_07380 SM00862 Transcriptional regulatory protein, C terminal QX56_07385 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QX56_07385 SM00387 Histidine kinase-like ATPases QX56_07385 SM00388 His Kinase A (phosphoacceptor) domain QX56_07415 SM00116 Domain in cystathionine beta-synthase and other proteins. QX56_07415 SM00924 MgtE intracellular N domain QX56_07420 SM00422 helix_turn_helix, mercury resistance QX56_07435 SM00347 helix_turn_helix multiple antibiotic resistance protein QX56_07470 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen QX56_07535 SM00091 PAS domain QX56_07535 SM00387 Histidine kinase-like ATPases QX56_07535 SM00388 His Kinase A (phosphoacceptor) domain QX56_07580 SM01007 Class II Aldolase and Adducin N-terminal domain QX56_07605 SM00387 Histidine kinase-like ATPases QX56_07605 SM00388 His Kinase A (phosphoacceptor) domain QX56_07610 SM00347 helix_turn_helix multiple antibiotic resistance protein QX56_07625 SM00382 ATPases associated with a variety of cellular activities QX56_07625 SM01086 C-terminal, D2-small domain, of ClpB protein QX56_07660 SM00822 QX56_07660 QX56_07665 SM00257 Lysin motif QX56_07670 SM00257 Lysin motif QX56_07675 SM00636 QX56_07675 QX56_07740 SM00354 helix_turn _helix lactose operon repressor QX56_07745 SM01061 CAT RNA binding domain QX56_07780 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QX56_07780 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QX56_07800 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) QX56_07800 SM00091 PAS domain QX56_07800 SM00387 Histidine kinase-like ATPases QX56_07800 SM00388 His Kinase A (phosphoacceptor) domain QX56_07815 SM00260 Two component signalling adaptor domain QX56_07815 SM00448 cheY-homologous receiver domain QX56_07830 SM00257 Lysin motif QX56_07860 SM00052 Putative diguanylate phosphodiesterase QX56_07960 SM00852 Probable molybdopterin binding domain QX56_07980 SM00382 ATPases associated with a variety of cellular activities QX56_07985 SM00382 ATPases associated with a variety of cellular activities QX56_08000 SM00382 ATPases associated with a variety of cellular activities QX56_08005 SM01066 Carbohydrate binding domain QX56_08010 SM00420 helix_turn_helix, Deoxyribose operon repressor QX56_08010 SM01134 QX56_08010 QX56_08035 SM00382 ATPases associated with a variety of cellular activities QX56_08060 SM00966 SpoVT / AbrB like domain QX56_08065 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) QX56_08065 SM00091 PAS domain QX56_08065 SM00387 Histidine kinase-like ATPases QX56_08065 SM00388 His Kinase A (phosphoacceptor) domain QX56_08085 SM00849 Metallo-beta-lactamase superfamily QX56_08120 SM00861 Transketolase, pyrimidine binding domain QX56_08210 SM00838 Elongation factor G C-terminus QX56_08230 SM00670 Large family of predicted nucleotide-binding domains QX56_08255 SM00878 Biotin carboxylase C-terminal domain QX56_08300 SM00116 Domain in cystathionine beta-synthase and other proteins. QX56_08350 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. QX56_08410 SM00740 QX56_08410 QX56_08420 SM00740 QX56_08420 QX56_08485 SM00842 Cell division protein FtsA QX56_08490 SM00864 Tubulin/FtsZ family, GTPase domain QX56_08490 SM00865 Tubulin/FtsZ family, C-terminal domain QX56_08515 SM00382 ATPases associated with a variety of cellular activities QX56_08550 SM00363 S4 RNA-binding domain QX56_08575 SM00363 S4 RNA-binding domain QX56_08600 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain QX56_08605 SM00851 MGS-like domain QX56_08605 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain QX56_08605 SM01209 QX56_08605 QX56_08620 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family QX56_08675 SM00831 Cation transporter/ATPase, N-terminus QX56_08690 SM00072 Guanylate kinase homologues. QX56_08695 SM01409 QX56_08695 QX56_08705 SM00487 DEAD-like helicases superfamily QX56_08705 SM00490 helicase superfamily c-terminal domain QX56_08730 SM00331 Sigma factor PP2C-like phosphatases QX56_08730 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain QX56_08735 SM00220 Serine/Threonine protein kinases, catalytic domain QX56_08735 SM00740 QX56_08735 QX56_08750 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain QX56_08770 SM01120 QX56_08770 QX56_08770 SM01121 QX56_08770 QX56_08785 SM00487 DEAD-like helicases superfamily QX56_08785 SM00490 helicase superfamily c-terminal domain QX56_08800 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. QX56_08805 SM00822 QX56_08805 QX56_08815 SM00358 Double-stranded RNA binding motif QX56_08815 SM00535 Ribonuclease III family QX56_08820 SM00968 SMC proteins Flexible Hinge Domain QX56_08825 SM00382 ATPases associated with a variety of cellular activities QX56_08825 SM00962 SRP54-type protein, GTPase domain QX56_08825 SM00963 SRP54-type protein, helical bundle domain QX56_08840 SM00382 ATPases associated with a variety of cellular activities QX56_08840 SM00962 SRP54-type protein, GTPase domain QX56_08840 SM00963 SRP54-type protein, helical bundle domain QX56_08900 SM00881 CoA binding domain QX56_08910 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain QX56_08910 SM00437 Bacterial DNA topoisomerase I DNA-binding domain QX56_08910 SM00493 QX56_08910 QX56_08930 SM00382 ATPases associated with a variety of cellular activities QX56_08930 SM01086 C-terminal, D2-small domain, of ClpB protein QX56_08970 SM00382 ATPases associated with a variety of cellular activities QX56_09020 SM00448 cheY-homologous receiver domain QX56_09055 SM00962 SRP54-type protein, GTPase domain QX56_09065 SM00448 cheY-homologous receiver domain QX56_09070 SM00073 Histidine Phosphotransfer domain QX56_09070 SM00260 Two component signalling adaptor domain QX56_09070 SM00387 Histidine kinase-like ATPases QX56_09070 SM01231 QX56_09070 QX56_09075 SM00260 Two component signalling adaptor domain QX56_09135 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. QX56_09145 SM00479 QX56_09145 QX56_09145 SM00481 DNA polymerase alpha chain like domain QX56_09155 SM00316 Ribosomal protein S1-like RNA-binding domain QX56_09155 SM00322 K homology RNA-binding domain QX56_09190 SM00904 Riboflavin kinase QX56_09195 SM01387 QX56_09195 QX56_09200 SM00316 Ribosomal protein S1-like RNA-binding domain QX56_09200 SM00322 K homology RNA-binding domain QX56_09235 SM00859 Semialdehyde dehydrogenase, NAD binding domain QX56_09245 SM01130 QX56_09245 QX56_09250 SM00849 Metallo-beta-lactamase superfamily QX56_09265 SM00382 ATPases associated with a variety of cellular activities QX56_09265 SM00843 QX56_09265 QX56_09270 SM00345 helix_turn_helix gluconate operon transcriptional repressor QX56_09270 SM00866 QX56_09270 QX56_09305 SM00530 Helix-turn-helix XRE-family like proteins QX56_09315 SM00852 Probable molybdopterin binding domain QX56_09320 SM00382 ATPases associated with a variety of cellular activities QX56_09330 SM00322 K homology RNA-binding domain QX56_09330 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. QX56_09345 SM00829 Enoylreductase QX56_09355 SM00729 Elongator protein 3, MiaB family, Radical SAM QX56_09370 SM00533 DNA-binding domain of DNA mismatch repair MUTS family QX56_09370 SM00534 ATPase domain of DNA mismatch repair MUTS family QX56_09375 SM00853 MutL C terminal dimerisation domain QX56_09375 SM01340 QX56_09375 QX56_09400 SM00849 Metallo-beta-lactamase superfamily QX56_09410 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. QX56_09415 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. QX56_09420 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. QX56_09430 SM00825 Beta-ketoacyl synthase QX56_09450 SM00822 QX56_09450 QX56_09450 SM00823 Phosphopantetheine attachment site QX56_09450 SM00825 Beta-ketoacyl synthase QX56_09450 SM00826 QX56_09450 QX56_09450 SM01294 QX56_09450 QX56_09455 SM00822 QX56_09455 QX56_09455 SM00823 Phosphopantetheine attachment site QX56_09455 SM00825 Beta-ketoacyl synthase QX56_09455 SM00826 QX56_09455 QX56_09455 SM01294 QX56_09455 QX56_09460 SM00822 QX56_09460 QX56_09460 SM00823 Phosphopantetheine attachment site QX56_09460 SM00825 Beta-ketoacyl synthase QX56_09460 SM00826 QX56_09460 QX56_09460 SM01294 QX56_09460 QX56_09470 SM00823 Phosphopantetheine attachment site QX56_09470 SM00825 Beta-ketoacyl synthase QX56_09470 SM01294 QX56_09470 QX56_09485 SM00849 Metallo-beta-lactamase superfamily QX56_09570 SM00646 QX56_09570 QX56_09575 SM00382 ATPases associated with a variety of cellular activities QX56_09595 SM00422 helix_turn_helix, mercury resistance QX56_09600 SM01230 QX56_09600 QX56_09620 SM00860 SMI1 / KNR4 family QX56_09685 SM00318 Staphylococcal nuclease homologues QX56_09695 SM01005 Alanine racemase, C-terminal domain QX56_09830 SM00257 Lysin motif QX56_09835 SM00857 Resolvase, N terminal domain QX56_09845 SM00861 Transketolase, pyrimidine binding domain QX56_09870 SM00448 cheY-homologous receiver domain QX56_09940 SM01207 QX56_09940 QX56_09945 SM00881 CoA binding domain QX56_09950 SM00387 Histidine kinase-like ATPases QX56_09950 SM00433 TopoisomeraseII QX56_09955 SM00434 DNA Topoisomerase IV QX56_09975 SM01067 Cellulose binding domain QX56_09990 SM00606 Cellulose Binding Domain Type IV QX56_10035 SM00878 Biotin carboxylase C-terminal domain QX56_10070 SM00823 Phosphopantetheine attachment site QX56_10070 SM00824 Thioesterase QX56_10075 SM00823 Phosphopantetheine attachment site QX56_10080 SM00823 Phosphopantetheine attachment site QX56_10080 SM01294 QX56_10080 QX56_10085 SM00823 Phosphopantetheine attachment site QX56_10090 SM00823 Phosphopantetheine attachment site QX56_10140 SM00829 Enoylreductase QX56_10160 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase QX56_10175 SM00822 QX56_10175 QX56_10210 SM00926 Molybdopterin oxidoreductase Fe4S4 domain QX56_10235 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QX56_10235 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QX56_10255 SM00656 QX56_10255 QX56_10270 SM00835 Cupin QX56_10305 SM00530 Helix-turn-helix XRE-family like proteins QX56_10370 SM00530 Helix-turn-helix XRE-family like proteins QX56_10465 SM00860 SMI1 / KNR4 family QX56_10475 SM00860 SMI1 / KNR4 family QX56_10485 SM00710 Parallel beta-helix repeats QX56_10495 SM00342 helix_turn_helix, arabinose operon control protein QX56_10510 SM00849 Metallo-beta-lactamase superfamily QX56_10515 SM00871 Bacterial transcription activator, effector binding domain QX56_10530 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor QX56_10570 SM00421 helix_turn_helix, Lux Regulon QX56_10570 SM00448 cheY-homologous receiver domain QX56_10575 SM00257 Lysin motif QX56_10580 SM00341 Helicase and RNase D C-terminal QX56_10580 SM00487 DEAD-like helicases superfamily QX56_10580 SM00490 helicase superfamily c-terminal domain QX56_10580 SM00956 QX56_10580 QX56_10665 SM00861 Transketolase, pyrimidine binding domain QX56_10670 SM00327 von Willebrand factor (vWF) type A domain QX56_10675 SM00382 ATPases associated with a variety of cellular activities QX56_10685 SM00257 Lysin motif QX56_10780 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. QX56_10780 SM00245 tail specific protease QX56_10815 SM00014 Acid phosphatase homologues QX56_10865 SM00882 Coenzyme A transferase QX56_10870 SM00882 Coenzyme A transferase QX56_10935 SM00530 Helix-turn-helix XRE-family like proteins QX56_11015 SM00871 Bacterial transcription activator, effector binding domain QX56_11035 SM00507 HNH nucleases QX56_11195 SM00481 DNA polymerase alpha chain like domain QX56_11250 SM00710 Parallel beta-helix repeats QX56_11325 SM00507 HNH nucleases QX56_11415 SM00530 Helix-turn-helix XRE-family like proteins QX56_11435 SM00530 Helix-turn-helix XRE-family like proteins QX56_11540 SM00530 Helix-turn-helix XRE-family like proteins QX56_11555 SM00411 bacterial (prokaryotic) histone like domain QX56_11750 SM00644 QX56_11750 QX56_11780 SM00382 ATPases associated with a variety of cellular activities QX56_11830 SM00860 SMI1 / KNR4 family QX56_11835 SM00860 SMI1 / KNR4 family QX56_11845 SM00860 SMI1 / KNR4 family QX56_11855 SM00318 Staphylococcal nuclease homologues QX56_11855 SM00894 Excalibur calcium-binding domain QX56_11890 SM00857 Resolvase, N terminal domain QX56_11910 SM00347 helix_turn_helix multiple antibiotic resistance protein QX56_11955 SM00382 ATPases associated with a variety of cellular activities QX56_12005 SM00567 E-Z type HEAT repeats QX56_12005 SM00932 Scaffold protein Nfu/NifU N terminal QX56_12010 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. QX56_12030 SM00357 Cold shock protein domain QX56_12070 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs QX56_12070 SM00475 5'-3' exonuclease QX56_12135 SM00354 helix_turn _helix lactose operon repressor QX56_12150 SM00491 QX56_12150 QX56_12160 SM00981 QX56_12160 QX56_12185 SM00487 DEAD-like helicases superfamily QX56_12185 SM00490 helicase superfamily c-terminal domain QX56_12245 SM00478 endonuclease III QX56_12245 SM00525 QX56_12245 QX56_12275 SM00479 QX56_12275 QX56_12275 SM00487 DEAD-like helicases superfamily QX56_12275 SM00491 QX56_12275 QX56_12315 SM00851 MGS-like domain QX56_12365 SM00914 QX56_12365 QX56_12370 SM00028 Tetratricopeptide repeats QX56_12435 SM00138 Methyltransferase, chemotaxis proteins QX56_12445 SM00562 QX56_12445 QX56_12475 SM00411 bacterial (prokaryotic) histone like domain QX56_12525 SM01240 QX56_12525 QX56_12530 SM00316 Ribosomal protein S1-like RNA-binding domain QX56_12570 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase QX56_12590 SM00257 Lysin motif QX56_12600 SM00487 DEAD-like helicases superfamily QX56_12600 SM00490 helicase superfamily c-terminal domain QX56_12645 SM00091 PAS domain QX56_12645 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QX56_12645 SM00387 Histidine kinase-like ATPases QX56_12645 SM00388 His Kinase A (phosphoacceptor) domain QX56_12650 SM00448 cheY-homologous receiver domain QX56_12650 SM00862 Transcriptional regulatory protein, C terminal QX56_12670 SM00363 S4 RNA-binding domain QX56_12685 SM00936 Penicillin-binding protein 5, C-terminal domain QX56_12825 SM00387 Histidine kinase-like ATPases QX56_12835 SM00936 Penicillin-binding protein 5, C-terminal domain QX56_12875 SM00919 Malic enzyme, NAD binding domain QX56_12875 SM01274 QX56_12875 QX56_12890 SM00870 QX56_12890 QX56_12895 SM00530 Helix-turn-helix XRE-family like proteins QX56_13000 SM00849 Metallo-beta-lactamase superfamily QX56_13025 SM00849 Metallo-beta-lactamase superfamily QX56_13035 SM01350 QX56_13035 QX56_13090 SM00382 ATPases associated with a variety of cellular activities QX56_13100 SM00062 Bacterial periplasmic substrate-binding proteins QX56_13100 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. QX56_13110 SM00046 Diacylglycerol kinase catalytic domain (presumed) QX56_13120 SM00422 helix_turn_helix, mercury resistance QX56_13130 SM00861 Transketolase, pyrimidine binding domain QX56_13150 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase QX56_13160 SM00091 PAS domain QX56_13160 SM00382 ATPases associated with a variety of cellular activities QX56_13205 SM00646 QX56_13205 QX56_13230 SM00448 cheY-homologous receiver domain QX56_13240 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. QX56_13255 SM00363 S4 RNA-binding domain QX56_13260 SM00861 Transketolase, pyrimidine binding domain QX56_13295 SM00878 Biotin carboxylase C-terminal domain QX56_13340 SM00382 ATPases associated with a variety of cellular activities QX56_13350 SM00841 Elongation factor P, C-terminal QX56_13350 SM01185 QX56_13350 QX56_13385 SM00529 Helix-turn-helix diphteria tox regulatory element QX56_13395 SM00450 Rhodanese Homology Domain QX56_13415 SM00487 DEAD-like helicases superfamily QX56_13415 SM00490 helicase superfamily c-terminal domain QX56_13430 SM00530 Helix-turn-helix XRE-family like proteins QX56_13490 SM00382 ATPases associated with a variety of cellular activities QX56_13505 SM01091 Transporter associated domain QX56_13530 SM00849 Metallo-beta-lactamase superfamily QX56_13550 SM00631 QX56_13550 QX56_13570 SM00028 Tetratricopeptide repeats QX56_13610 SM00382 ATPases associated with a variety of cellular activities QX56_13615 SM00382 ATPases associated with a variety of cellular activities QX56_13665 SM00257 Lysin motif QX56_13700 SM00518 AP endonuclease family 2 QX56_13705 SM00487 DEAD-like helicases superfamily QX56_13705 SM00490 helicase superfamily c-terminal domain QX56_13740 SM00400 zinc finger QX56_13740 SM00493 QX56_13740 QX56_13755 SM00116 Domain in cystathionine beta-synthase and other proteins. QX56_13800 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. QX56_13855 SM00729 Elongator protein 3, MiaB family, Radical SAM QX56_13870 SM00271 DnaJ molecular chaperone homology domain QX56_13890 SM00729 Elongator protein 3, MiaB family, Radical SAM QX56_13895 SM00838 Elongation factor G C-terminus QX56_13930 SM00849 Metallo-beta-lactamase superfamily QX56_13940 SM00278 Helix-hairpin-helix DNA-binding motif class 1 QX56_13960 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. QX56_13970 SM01103 QX56_13970 QX56_14005 SM00644 QX56_14005 QX56_14015 SM01350 QX56_14015 QX56_14035 SM00857 Resolvase, N terminal domain QX56_14040 SM00226 Low molecular weight phosphatase family QX56_14055 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor QX56_14065 SM00028 Tetratricopeptide repeats QX56_14105 SM00644 QX56_14105 QX56_14165 SM00257 Lysin motif QX56_14300 SM00382 ATPases associated with a variety of cellular activities QX56_14330 SM00530 Helix-turn-helix XRE-family like proteins QX56_14340 SM00530 Helix-turn-helix XRE-family like proteins QX56_14345 SM00530 Helix-turn-helix XRE-family like proteins QX56_14380 SM00388 His Kinase A (phosphoacceptor) domain QX56_14385 SM00448 cheY-homologous receiver domain QX56_14385 SM00862 Transcriptional regulatory protein, C terminal QX56_14425 SM00450 Rhodanese Homology Domain QX56_14425 SM00849 Metallo-beta-lactamase superfamily QX56_14435 SM00450 Rhodanese Homology Domain QX56_14465 SM00422 helix_turn_helix, mercury resistance QX56_14480 SM01091 Transporter associated domain QX56_14540 SM00344 helix_turn_helix ASNC type QX56_14645 SM00287 Bacterial SH3 domain homologues QX56_14685 SM00422 helix_turn_helix, mercury resistance QX56_14695 SM00829 Enoylreductase QX56_14705 SM00640 Glycosyl hydrolases family 32 QX56_14730 SM00382 ATPases associated with a variety of cellular activities QX56_14800 SM00926 Molybdopterin oxidoreductase Fe4S4 domain QX56_14800 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region QX56_14830 SM00650 Ribosomal RNA adenine dimethylases QX56_14885 SM00732 Likely ribonuclease with RNase H fold. QX56_14895 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain QX56_14905 SM00382 ATPases associated with a variety of cellular activities QX56_14910 SM00062 Bacterial periplasmic substrate-binding proteins QX56_14910 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. QX56_14940 SM00382 ATPases associated with a variety of cellular activities QX56_14945 SM00028 Tetratricopeptide repeats QX56_14965 SM00382 ATPases associated with a variety of cellular activities QX56_14995 SM00287 Bacterial SH3 domain homologues QX56_14995 SM00646 QX56_14995 QX56_15005 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. QX56_15005 SM00954 Region found in RelA / SpoT proteins QX56_15055 SM01323 QX56_15055 QX56_15075 SM00382 ATPases associated with a variety of cellular activities QX56_15080 SM00278 Helix-hairpin-helix DNA-binding motif class 1 QX56_15135 SM00257 Lysin motif QX56_15180 SM01317 QX56_15180 QX56_15280 SM00257 Lysin motif QX56_15290 SM01004 Delta-aminolevulinic acid dehydratase QX56_15325 SM00382 ATPases associated with a variety of cellular activities QX56_15325 SM00464 Found in ATP-dependent protease La (LON) QX56_15330 SM00382 ATPases associated with a variety of cellular activities QX56_15335 SM00382 ATPases associated with a variety of cellular activities QX56_15335 SM00994 ClpX C4-type zinc finger QX56_15335 SM01086 C-terminal, D2-small domain, of ClpB protein QX56_15360 SM01329 QX56_15360 QX56_15365 SM00917 LeuA allosteric (dimerisation) domain QX56_15425 SM00909 Sporulation and spore germination QX56_15435 SM00347 helix_turn_helix multiple antibiotic resistance protein QX56_15440 SM00421 helix_turn_helix, Lux Regulon QX56_15480 SM00465 GIY-YIG type nucleases (URI domain) QX56_15490 SM00813 Alpha-L-arabinofuranosidase C-terminus QX56_15495 SM00893 Electron transfer flavoprotein domain QX56_15500 SM00893 Electron transfer flavoprotein domain QX56_15525 SM00463 Small MutS-related domain QX56_15525 SM00533 DNA-binding domain of DNA mismatch repair MUTS family QX56_15525 SM00534 ATPase domain of DNA mismatch repair MUTS family QX56_15530 SM00278 Helix-hairpin-helix DNA-binding motif class 1 QX56_15530 SM00481 DNA polymerase alpha chain like domain QX56_15530 SM00483 DNA polymerase X family QX56_15550 SM00873 B3/4 domain QX56_15550 SM00874 tRNA synthetase B5 domain QX56_15550 SM00896 Ferredoxin-fold anticodon binding domain QX56_15565 SM00967 RNA 2'-O ribose methyltransferase substrate binding QX56_15605 SM00813 Alpha-L-arabinofuranosidase C-terminus QX56_15635 SM01007 Class II Aldolase and Adducin N-terminal domain QX56_15700 SM00448 cheY-homologous receiver domain QX56_15700 SM00850 LytTr DNA-binding domain QX56_15705 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. QX56_15705 SM00387 Histidine kinase-like ATPases QX56_15715 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain QX56_15730 SM00382 ATPases associated with a variety of cellular activities QX56_15750 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain QX56_15785 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain QX56_15785 SM01232 QX56_15785 QX56_15790 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs QX56_15790 SM00474 3'-5' exonuclease QX56_15790 SM00475 5'-3' exonuclease QX56_15790 SM00482 DNA polymerase A domain QX56_15795 SM00091 PAS domain QX56_15795 SM00387 Histidine kinase-like ATPases QX56_15795 SM00388 His Kinase A (phosphoacceptor) domain QX56_15800 SM00448 cheY-homologous receiver domain QX56_15800 SM00862 Transcriptional regulatory protein, C terminal QX56_15810 SM01329 QX56_15810 QX56_15855 SM00919 Malic enzyme, NAD binding domain QX56_15855 SM01274 QX56_15855 QX56_15860 SM00481 DNA polymerase alpha chain like domain QX56_15890 SM00116 Domain in cystathionine beta-synthase and other proteins. QX56_15910 SM00904 Riboflavin kinase QX56_15930 SM00382 ATPases associated with a variety of cellular activities QX56_15945 SM00062 Bacterial periplasmic substrate-binding proteins QX56_15950 SM00062 Bacterial periplasmic substrate-binding proteins QX56_15965 SM00849 Metallo-beta-lactamase superfamily QX56_15990 SM00852 Probable molybdopterin binding domain QX56_16050 SM00981 QX56_16050 QX56_16080 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. QX56_16085 SM00267 diguanylate cyclase QX56_16090 SM00363 S4 RNA-binding domain QX56_16090 SM01390 QX56_16090 QX56_16100 SM00363 S4 RNA-binding domain QX56_16115 SM00116 Domain in cystathionine beta-synthase and other proteins. QX56_16135 SM00354 helix_turn _helix lactose operon repressor QX56_16140 SM00830 Chorismate mutase type II QX56_16165 SM00382 ATPases associated with a variety of cellular activities QX56_16165 SM00843 QX56_16165 QX56_16200 SM00919 Malic enzyme, NAD binding domain QX56_16200 SM01274 QX56_16200 QX56_16205 SM00849 Metallo-beta-lactamase superfamily QX56_16225 SM00642 Alpha-amylase domain QX56_16230 SM00046 Diacylglycerol kinase catalytic domain (presumed) QX56_16265 SM00382 ATPases associated with a variety of cellular activities QX56_16270 SM00420 helix_turn_helix, Deoxyribose operon repressor QX56_16275 SM00363 S4 RNA-binding domain QX56_16325 SM00342 helix_turn_helix, arabinose operon control protein QX56_16350 SM00729 Elongator protein 3, MiaB family, Radical SAM QX56_16350 SM00876 Biotin and Thiamin Synthesis associated domain QX56_16380 SM00354 helix_turn _helix lactose operon repressor QX56_16405 SM00450 Rhodanese Homology Domain QX56_16420 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) QX56_16420 SM00091 PAS domain QX56_16440 SM00382 ATPases associated with a variety of cellular activities QX56_16445 SM00387 Histidine kinase-like ATPases QX56_16450 SM00448 cheY-homologous receiver domain QX56_16450 SM00862 Transcriptional regulatory protein, C terminal QX56_16460 SM00382 ATPases associated with a variety of cellular activities QX56_16475 SM00382 ATPases associated with a variety of cellular activities QX56_16480 SM00345 helix_turn_helix gluconate operon transcriptional repressor QX56_16495 SM00729 Elongator protein 3, MiaB family, Radical SAM QX56_16555 SM00382 ATPases associated with a variety of cellular activities QX56_16595 SM01234 QX56_16595 QX56_16600 SM00947 Carbonic anhydrase QX56_16635 SM00382 ATPases associated with a variety of cellular activities QX56_16645 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain QX56_16685 SM00984 UDP binding domain QX56_16745 SM00642 Alpha-amylase domain QX56_16885 SM00244 prohibitin homologues QX56_16940 SM00047 Lysozyme subfamily 2 QX56_16990 SM00420 helix_turn_helix, Deoxyribose operon repressor QX56_16990 SM01134 QX56_16990 QX56_16995 SM01007 Class II Aldolase and Adducin N-terminal domain QX56_17000 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QX56_17000 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QX56_17000 SM00319 Homologues of the ligand binding domain of Tar QX56_17005 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QX56_17005 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QX56_17005 SM00319 Homologues of the ligand binding domain of Tar QX56_17010 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QX56_17010 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QX56_17010 SM00319 Homologues of the ligand binding domain of Tar QX56_17015 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QX56_17015 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QX56_17015 SM00319 Homologues of the ligand binding domain of Tar QX56_17035 SM00642 Alpha-amylase domain QX56_17040 SM01091 Transporter associated domain QX56_17095 SM00316 Ribosomal protein S1-like RNA-binding domain QX56_17105 SM00344 helix_turn_helix ASNC type QX56_17125 SM00387 Histidine kinase-like ATPases QX56_17125 SM00388 His Kinase A (phosphoacceptor) domain QX56_17130 SM01298 QX56_17130 QX56_17135 SM00479 QX56_17135 QX56_17165 SM00091 PAS domain QX56_17165 SM00387 Histidine kinase-like ATPases QX56_17170 SM00448 cheY-homologous receiver domain QX56_17180 SM00382 ATPases associated with a variety of cellular activities QX56_17245 SM00421 helix_turn_helix, Lux Regulon QX56_17245 SM00448 cheY-homologous receiver domain QX56_17250 SM00387 Histidine kinase-like ATPases QX56_17275 SM00052 Putative diguanylate phosphodiesterase QX56_17320 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. QX56_17365 SM01002 Alanine dehydrogenase/PNT, C-terminal domain QX56_17365 SM01003 Alanine dehydrogenase/PNT, N-terminal domain QX56_17375 SM00923 MbtH-like protein QX56_17380 SM00823 Phosphopantetheine attachment site QX56_17380 SM00824 Thioesterase QX56_17465 SM01240 QX56_17465 QX56_17565 SM00729 Elongator protein 3, MiaB family, Radical SAM QX56_17645 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain QX56_17685 SM00382 ATPases associated with a variety of cellular activities QX56_17690 SM00345 helix_turn_helix gluconate operon transcriptional repressor QX56_17690 SM00866 QX56_17690 QX56_17720 SM00465 GIY-YIG type nucleases (URI domain) QX56_17745 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor QX56_17770 SM00382 ATPases associated with a variety of cellular activities QX56_17795 SM00382 ATPases associated with a variety of cellular activities QX56_17795 SM00930 QX56_17795 QX56_17810 SM00493 QX56_17810 QX56_17865 SM00347 helix_turn_helix multiple antibiotic resistance protein QX56_17900 SM00382 ATPases associated with a variety of cellular activities QX56_17930 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. QX56_17935 SM00448 cheY-homologous receiver domain QX56_17935 SM00862 Transcriptional regulatory protein, C terminal QX56_17940 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QX56_17940 SM00387 Histidine kinase-like ATPases QX56_17940 SM00388 His Kinase A (phosphoacceptor) domain QX56_17980 SM00421 helix_turn_helix, Lux Regulon QX56_17980 SM00448 cheY-homologous receiver domain QX56_17985 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QX56_17985 SM00387 Histidine kinase-like ATPases QX56_18020 SM00382 ATPases associated with a variety of cellular activities QX56_18050 SM00387 Histidine kinase-like ATPases QX56_18050 SM00388 His Kinase A (phosphoacceptor) domain QX56_18055 SM00448 cheY-homologous receiver domain QX56_18055 SM00862 Transcriptional regulatory protein, C terminal QX56_18075 SM00835 Cupin QX56_18090 SM00382 ATPases associated with a variety of cellular activities QX56_18100 SM00382 ATPases associated with a variety of cellular activities QX56_18265 SM00316 Ribosomal protein S1-like RNA-binding domain QX56_18265 SM00357 Cold shock protein domain QX56_18265 SM00955 QX56_18265 QX56_18285 SM00530 Helix-turn-helix XRE-family like proteins QX56_18290 SM00530 Helix-turn-helix XRE-family like proteins QX56_18295 SM00530 Helix-turn-helix XRE-family like proteins QX56_18305 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). QX56_18305 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QX56_18325 SM00116 Domain in cystathionine beta-synthase and other proteins. QX56_18325 SM00382 ATPases associated with a variety of cellular activities QX56_18340 SM00752 Horizontally Transferred TransMembrane Domain QX56_18355 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor QX56_18375 SM00116 Domain in cystathionine beta-synthase and other proteins. QX56_18375 SM00382 ATPases associated with a variety of cellular activities QX56_18410 SM01192 QX56_18410 QX56_18410 SM01193 QX56_18410 QX56_18435 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain QX56_18450 SM00345 helix_turn_helix gluconate operon transcriptional repressor QX56_18475 SM00636 QX56_18475 QX56_18495 SM00421 helix_turn_helix, Lux Regulon QX56_18495 SM00448 cheY-homologous receiver domain QX56_18510 SM00382 ATPases associated with a variety of cellular activities QX56_18520 SM00331 Sigma factor PP2C-like phosphatases QX56_18550 SM00354 helix_turn _helix lactose operon repressor QX56_18555 SM00345 helix_turn_helix gluconate operon transcriptional repressor QX56_18555 SM00895 QX56_18555 QX56_18650 SM00530 Helix-turn-helix XRE-family like proteins QX56_18690 SM00640 Glycosyl hydrolases family 32 QX56_18745 SM00642 Alpha-amylase domain QX56_18775 SM00642 Alpha-amylase domain QX56_18780 SM00354 helix_turn _helix lactose operon repressor QX56_18800 SM00947 Carbonic anhydrase QX56_18815 SM00382 ATPases associated with a variety of cellular activities QX56_18820 SM00387 Histidine kinase-like ATPases QX56_18825 SM00448 cheY-homologous receiver domain QX56_18825 SM00862 Transcriptional regulatory protein, C terminal QX56_18875 SM00028 Tetratricopeptide repeats QX56_18880 SM00382 ATPases associated with a variety of cellular activities QX56_18985 SM00345 helix_turn_helix gluconate operon transcriptional repressor QX56_18985 SM00866 QX56_18985 QX56_18995 SM00347 helix_turn_helix multiple antibiotic resistance protein QX56_19010 SM00347 helix_turn_helix multiple antibiotic resistance protein QX56_19050 SM00382 ATPases associated with a variety of cellular activities QX56_19055 SM00487 DEAD-like helicases superfamily QX56_19055 SM00490 helicase superfamily c-terminal domain QX56_19080 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. QX56_19090 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. QX56_19090 SM00245 tail specific protease QX56_19100 SM00382 ATPases associated with a variety of cellular activities QX56_19115 SM00937 QX56_19115 QX56_19120 SM00957 SecA DEAD-like domain QX56_19120 SM00958 SecA preprotein cross-linking domain QX56_19210 SM00487 DEAD-like helicases superfamily QX56_19210 SM00490 helicase superfamily c-terminal domain QX56_19220 SM00421 helix_turn_helix, Lux Regulon QX56_19220 SM00448 cheY-homologous receiver domain QX56_19225 SM00387 Histidine kinase-like ATPases QX56_19265 SM00984 UDP binding domain QX56_19290 SM00646 QX56_19290 QX56_19340 SM00382 ATPases associated with a variety of cellular activities QX56_19380 SM00047 Lysozyme subfamily 2 QX56_19380 SM00287 Bacterial SH3 domain homologues QX56_19435 SM00854 Bacterial capsule synthesis protein PGA_cap QX56_19450 SM00354 helix_turn _helix lactose operon repressor QX56_19465 SM00382 ATPases associated with a variety of cellular activities QX56_19480 SM00287 Bacterial SH3 domain homologues QX56_19535 SM00903 Flavin reductase like domain QX56_19550 SM00344 helix_turn_helix ASNC type QX56_19610 SM00984 UDP binding domain QX56_19640 SM00487 DEAD-like helicases superfamily QX56_19640 SM00490 helicase superfamily c-terminal domain QX56_19650 SM00420 helix_turn_helix, Deoxyribose operon repressor QX56_19650 SM01134 QX56_19650 QX56_19675 SM00387 Histidine kinase-like ATPases QX56_19690 SM00028 Tetratricopeptide repeats QX56_19715 SM00347 helix_turn_helix multiple antibiotic resistance protein QX56_19725 SM00710 Parallel beta-helix repeats QX56_19725 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses QX56_19755 SM00938 Nitrogen regulatory protein P-II QX56_19760 SM00014 Acid phosphatase homologues QX56_19795 SM00155 Phospholipase D. Active site motifs. QX56_19800 SM00422 helix_turn_helix, mercury resistance QX56_19850 SM00028 Tetratricopeptide repeats QX56_19855 SM00729 Elongator protein 3, MiaB family, Radical SAM QX56_19870 SM00327 von Willebrand factor (vWF) type A domain QX56_19880 SM00327 von Willebrand factor (vWF) type A domain QX56_19915 SM00382 ATPases associated with a variety of cellular activities QX56_19980 SM00226 Low molecular weight phosphatase family QX56_20020 SM00937 QX56_20020 QX56_20040 SM00919 Malic enzyme, NAD binding domain QX56_20040 SM01274 QX56_20040 QX56_20055 SM00357 Cold shock protein domain QX56_20055 SM00382 ATPases associated with a variety of cellular activities QX56_20055 SM00959 Rho termination factor, N-terminal domain QX56_20085 SM00448 cheY-homologous receiver domain QX56_20115 SM00155 Phospholipase D. Active site motifs. QX56_20135 SM00382 ATPases associated with a variety of cellular activities QX56_20140 SM00155 Phospholipase D. Active site motifs. QX56_20160 SM00926 Molybdopterin oxidoreductase Fe4S4 domain QX56_20175 SM00100 Cyclic nucleotide-monophosphate binding domain QX56_20175 SM00419 helix_turn_helix, cAMP Regulatory protein QX56_20185 SM00836 DALR anticodon binding domain QX56_20185 SM01016 Arginyl tRNA synthetase N terminal dom QX56_20200 SM00729 Elongator protein 3, MiaB family, Radical SAM QX56_20250 SM00028 Tetratricopeptide repeats QX56_20295 SM00347 helix_turn_helix multiple antibiotic resistance protein QX56_20300 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain QX56_20325 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. QX56_20420 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase QX56_20460 SM00858 QX56_20460 QX56_20515 SM00986 Uracil DNA glycosylase superfamily QX56_20515 SM00987 UreE urease accessory protein, C-terminal domain QX56_20550 SM00640 Glycosyl hydrolases family 32 QX56_20565 SM01061 CAT RNA binding domain QX56_20715 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase QX56_20745 SM01061 CAT RNA binding domain QX56_20760 SM00347 helix_turn_helix multiple antibiotic resistance protein QX56_20765 SM00363 S4 RNA-binding domain QX56_20775 SM00954 Region found in RelA / SpoT proteins QX56_20860 SM01060 QX56_20860 QX56_20875 SM00382 ATPases associated with a variety of cellular activities QX56_20910 SM00382 ATPases associated with a variety of cellular activities QX56_20915 SM00382 ATPases associated with a variety of cellular activities QX56_20950 SM00382 ATPases associated with a variety of cellular activities QX56_21000 SM00421 helix_turn_helix, Lux Regulon QX56_21000 SM00448 cheY-homologous receiver domain QX56_21035 SM00822 QX56_21035 QX56_21040 SM00882 Coenzyme A transferase QX56_21045 SM00882 Coenzyme A transferase QX56_21085 SM01060 QX56_21085 QX56_21100 SM01061 CAT RNA binding domain QX56_21115 SM00487 DEAD-like helicases superfamily QX56_21115 SM00490 helicase superfamily c-terminal domain QX56_21205 SM00860 SMI1 / KNR4 family QX56_21265 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain QX56_21275 SM01133 QX56_21275 QX56_21305 SM00382 ATPases associated with a variety of cellular activities QX56_21315 SM00062 Bacterial periplasmic substrate-binding proteins QX56_21385 SM00382 ATPases associated with a variety of cellular activities QX56_21390 SM00387 Histidine kinase-like ATPases QX56_21395 SM00448 cheY-homologous receiver domain QX56_21395 SM00862 Transcriptional regulatory protein, C terminal QX56_21450 SM00420 helix_turn_helix, Deoxyribose operon repressor QX56_21450 SM01134 QX56_21450 QX56_21475 SM00387 Histidine kinase-like ATPases QX56_21505 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. QX56_21535 SM00564 beta-propeller repeat QX56_21570 SM00347 helix_turn_helix multiple antibiotic resistance protein QX56_21595 SM00345 helix_turn_helix gluconate operon transcriptional repressor QX56_21595 SM00895 QX56_21595 QX56_21610 SM01350 QX56_21610 QX56_21635 SM00345 helix_turn_helix gluconate operon transcriptional repressor QX56_21635 SM00866 QX56_21635 QX56_21650 SM00382 ATPases associated with a variety of cellular activities QX56_21755 SM00091 PAS domain QX56_21755 SM00382 ATPases associated with a variety of cellular activities QX56_21770 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. QX56_21775 SM00849 Metallo-beta-lactamase superfamily QX56_21790 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) QX56_21790 SM00091 PAS domain QX56_21790 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain QX56_21790 SM00387 Histidine kinase-like ATPases QX56_21790 SM00388 His Kinase A (phosphoacceptor) domain QX56_21795 SM00448 cheY-homologous receiver domain QX56_21795 SM00862 Transcriptional regulatory protein, C terminal QX56_21820 SM00788 Adenylosuccinate synthetase QX56_21830 SM00382 ATPases associated with a variety of cellular activities QX56_21870 SM00267 diguanylate cyclase QX56_21895 SM01131 QX56_21895 QX56_21950 SM00382 ATPases associated with a variety of cellular activities QX56_21990 SM00849 Metallo-beta-lactamase superfamily QX56_21995 SM00347 helix_turn_helix multiple antibiotic resistance protein QX56_22035 SM00422 helix_turn_helix, mercury resistance QX56_22060 SM01266 QX56_22060 QX56_22070 SM00354 helix_turn _helix lactose operon repressor QX56_22100 SM00926 Molybdopterin oxidoreductase Fe4S4 domain QX56_22120 SM00470 ParB-like nuclease domain QX56_22135 SM00470 ParB-like nuclease domain QX56_22145 SM01228 QX56_22145 QX56_22155 SM00322 K homology RNA-binding domain QX56_22155 SM00393 Putative single-stranded nucleic acids-binding domain QX56_22155 SM01245 QX56_22155