BSSX_0001 SM00382 ATPases associated with a variety of cellular activities BSSX_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain BSSX_0002 SM00480 DNA polymerase III beta subunit BSSX_0006 SM00387 Histidine kinase-like ATPases BSSX_0006 SM00433 TopoisomeraseII BSSX_0007 SM00434 DNA Topoisomerase IV BSSX_0015 SM00116 Domain in cystathionine beta-synthase and other proteins. BSSX_0015 SM01240 BSSX_0015 BSSX_0016 SM00936 Penicillin-binding protein 5, C-terminal domain BSSX_0023 SM00257 Lysin motif BSSX_0023 SM00636 BSSX_0023 BSSX_0026 SM00382 ATPases associated with a variety of cellular activities BSSX_0028 SM00493 BSSX_0028 BSSX_0050 SM00966 SpoVT / AbrB like domain BSSX_0053 SM01208 BSSX_0053 BSSX_0054 SM00493 BSSX_0054 BSSX_0055 SM00650 Ribosomal RNA adenine dimethylases BSSX_0065 SM01400 BSSX_0065 BSSX_0069 SM00487 DEAD-like helicases superfamily BSSX_0069 SM00490 helicase superfamily c-terminal domain BSSX_0069 SM00982 BSSX_0069 BSSX_0069 SM01058 CarD-like/TRCF domain BSSX_0070 SM00966 SpoVT / AbrB like domain BSSX_0073 SM00363 S4 RNA-binding domain BSSX_0077 SM00316 Ribosomal protein S1-like RNA-binding domain BSSX_0080 SM00331 Sigma factor PP2C-like phosphatases BSSX_0080 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BSSX_0082 SM00220 Serine/Threonine protein kinases, catalytic domain BSSX_0083 SM00977 TilS substrate C-terminal domain BSSX_0085 SM00382 ATPases associated with a variety of cellular activities BSSX_0094 SM00905 Dihydroneopterin aldolase BSSX_0096 SM00530 Helix-turn-helix XRE-family like proteins BSSX_0120 SM00382 ATPases associated with a variety of cellular activities BSSX_0120 SM01086 C-terminal, D2-small domain, of ClpB protein BSSX_0121 SM00382 ATPases associated with a variety of cellular activities BSSX_0123 SM00670 Large family of predicted nucleotide-binding domains BSSX_0129 SM00840 BSSX_0129 BSSX_0130 SM00535 Ribonuclease III family BSSX_0131 SM00967 RNA 2'-O ribose methyltransferase substrate binding BSSX_0135 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BSSX_0135 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BSSX_0136 SM00649 Ribosomal protein L11/L12 BSSX_0142 SM00663 RNA polymerase I subunit A N-terminus BSSX_0146 SM00838 Elongation factor G C-terminus BSSX_0146 SM00889 Elongation factor G, domain IV BSSX_0149 SM01403 BSSX_0149 BSSX_0153 SM01382 BSSX_0153 BSSX_0153 SM01383 BSSX_0153 BSSX_0155 SM00322 K homology RNA-binding domain BSSX_0159 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BSSX_0175 SM00662 RNA polymerases D BSSX_0177 SM00382 ATPases associated with a variety of cellular activities BSSX_0178 SM00382 ATPases associated with a variety of cellular activities BSSX_0185 SM00646 BSSX_0185 BSSX_0188 SM01251 BSSX_0188 BSSX_0215 SM00342 helix_turn_helix, arabinose operon control protein BSSX_0236 SM00014 Acid phosphatase homologues BSSX_0243 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BSSX_0249 SM00448 cheY-homologous receiver domain BSSX_0249 SM00862 Transcriptional regulatory protein, C terminal BSSX_0250 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSSX_0250 SM00388 His Kinase A (phosphoacceptor) domain BSSX_0266 SM00347 helix_turn_helix multiple antibiotic resistance protein BSSX_0270 SM00342 helix_turn_helix, arabinose operon control protein BSSX_0282 SM00450 Rhodanese Homology Domain BSSX_0286 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSSX_0286 SM00866 BSSX_0286 BSSX_0295 SM00387 Histidine kinase-like ATPases BSSX_0296 SM00448 cheY-homologous receiver domain BSSX_0297 SM01130 BSSX_0297 BSSX_0300 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BSSX_0301 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSSX_0301 SM00895 BSSX_0301 BSSX_0302 SM00858 BSSX_0302 BSSX_0307 SM00448 cheY-homologous receiver domain BSSX_0307 SM00862 Transcriptional regulatory protein, C terminal BSSX_0308 SM00387 Histidine kinase-like ATPases BSSX_0308 SM00388 His Kinase A (phosphoacceptor) domain BSSX_0309 SM00382 ATPases associated with a variety of cellular activities BSSX_0315 SM00327 von Willebrand factor (vWF) type A domain BSSX_0324 SM00870 BSSX_0324 BSSX_0328 SM00387 Histidine kinase-like ATPases BSSX_0329 SM00448 cheY-homologous receiver domain BSSX_0329 SM00850 LytTr DNA-binding domain BSSX_0330 SM00382 ATPases associated with a variety of cellular activities BSSX_0337 SM00028 Tetratricopeptide repeats BSSX_0339 SM00642 Alpha-amylase domain BSSX_0341 SM00382 ATPases associated with a variety of cellular activities BSSX_0352 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BSSX_0353 SM00116 Domain in cystathionine beta-synthase and other proteins. BSSX_0353 SM00382 ATPases associated with a variety of cellular activities BSSX_0359 SM00632 BSSX_0359 BSSX_0359 SM00642 Alpha-amylase domain BSSX_0363 SM00347 helix_turn_helix multiple antibiotic resistance protein BSSX_0387 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BSSX_0394 SM00833 Cobalamin synthesis protein cobW C-terminal domain BSSX_0396 SM00062 Bacterial periplasmic substrate-binding proteins BSSX_0403 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSSX_0403 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSSX_0405 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BSSX_0409 SM00823 Phosphopantetheine attachment site BSSX_0409 SM01294 BSSX_0409 BSSX_0410 SM00823 Phosphopantetheine attachment site BSSX_0410 SM01294 BSSX_0410 BSSX_0411 SM00823 Phosphopantetheine attachment site BSSX_0416 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSSX_0419 SM00382 ATPases associated with a variety of cellular activities BSSX_0421 SM00062 Bacterial periplasmic substrate-binding proteins BSSX_0429 SM00710 Parallel beta-helix repeats BSSX_0429 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses BSSX_0434 SM00382 ATPases associated with a variety of cellular activities BSSX_0436 SM00448 cheY-homologous receiver domain BSSX_0436 SM00862 Transcriptional regulatory protein, C terminal BSSX_0437 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSSX_0437 SM00387 Histidine kinase-like ATPases BSSX_0437 SM00388 His Kinase A (phosphoacceptor) domain BSSX_0439 SM00028 Tetratricopeptide repeats BSSX_0447 SM00382 ATPases associated with a variety of cellular activities BSSX_0453 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BSSX_0454 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSSX_0461 SM00420 helix_turn_helix, Deoxyribose operon repressor BSSX_0466 SM01329 BSSX_0466 BSSX_0475 SM00796 Allophanate hydrolase subunit 1 BSSX_0476 SM00797 Allophanate hydrolase subunit 2 BSSX_0477 SM00346 helix_turn_helix isocitrate lyase regulation BSSX_0493 SM00344 helix_turn_helix ASNC type BSSX_0494 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BSSX_0494 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BSSX_0494 SM00493 BSSX_0494 BSSX_0496 SM00267 diguanylate cyclase BSSX_0515 SM00091 PAS domain BSSX_0515 SM00387 Histidine kinase-like ATPases BSSX_0516 SM00448 cheY-homologous receiver domain BSSX_0520 SM00382 ATPases associated with a variety of cellular activities BSSX_0530 SM00487 DEAD-like helicases superfamily BSSX_0530 SM00490 helicase superfamily c-terminal domain BSSX_0536 SM01005 Alanine racemase, C-terminal domain BSSX_0541 SM00387 Histidine kinase-like ATPases BSSX_0542 SM00331 Sigma factor PP2C-like phosphatases BSSX_0546 SM00331 Sigma factor PP2C-like phosphatases BSSX_0546 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BSSX_0549 SM00347 helix_turn_helix multiple antibiotic resistance protein BSSX_0550 SM00316 Ribosomal protein S1-like RNA-binding domain BSSX_0550 SM00732 Likely ribonuclease with RNase H fold. BSSX_0552 SM00731 SprT homologues. BSSX_0561 SM00220 Serine/Threonine protein kinases, catalytic domain BSSX_0561 SM01260 BSSX_0561 BSSX_0563 SM00220 Serine/Threonine protein kinases, catalytic domain BSSX_0563 SM01260 BSSX_0563 BSSX_0564 SM00382 ATPases associated with a variety of cellular activities BSSX_0566 SM00530 Helix-turn-helix XRE-family like proteins BSSX_0568 SM00357 Cold shock protein domain BSSX_0569 SM01058 CarD-like/TRCF domain BSSX_0572 SM00342 helix_turn_helix, arabinose operon control protein BSSX_0574 SM00342 helix_turn_helix, arabinose operon control protein BSSX_0574 SM00871 Bacterial transcription activator, effector binding domain BSSX_0575 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSSX_0582 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSSX_0591 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BSSX_0598 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSSX_0598 SM00387 Histidine kinase-like ATPases BSSX_0598 SM00388 His Kinase A (phosphoacceptor) domain BSSX_0599 SM00448 cheY-homologous receiver domain BSSX_0599 SM00862 Transcriptional regulatory protein, C terminal BSSX_0600 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSSX_0603 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BSSX_0607 SM00387 Histidine kinase-like ATPases BSSX_0608 SM00421 helix_turn_helix, Lux Regulon BSSX_0608 SM00448 cheY-homologous receiver domain BSSX_0612 SM00422 helix_turn_helix, mercury resistance BSSX_0612 SM00871 Bacterial transcription activator, effector binding domain BSSX_0633 SM00382 ATPases associated with a variety of cellular activities BSSX_0637 SM00347 helix_turn_helix multiple antibiotic resistance protein BSSX_0640 SM00347 helix_turn_helix multiple antibiotic resistance protein BSSX_0640 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BSSX_0643 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSSX_0643 SM00895 BSSX_0643 BSSX_0644 SM00257 Lysin motif BSSX_0644 SM00636 BSSX_0644 BSSX_0647 SM00098 Alkaline phosphatase homologues BSSX_0651 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BSSX_0658 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSSX_0658 SM00866 BSSX_0658 BSSX_0676 SM00382 ATPases associated with a variety of cellular activities BSSX_0678 SM00881 CoA binding domain BSSX_0683 SM00883 Chaperonin 10 Kd subunit BSSX_0686 SM00028 Tetratricopeptide repeats BSSX_0686 SM00382 ATPases associated with a variety of cellular activities BSSX_0687 SM00829 Enoylreductase BSSX_0696 SM00829 Enoylreductase BSSX_0710 SM00460 Transglutaminase/protease-like homologues BSSX_0721 SM01001 AIR carboxylase BSSX_0723 SM00998 Adenylosuccinate lyase C-terminus BSSX_0726 SM01211 BSSX_0726 BSSX_0731 SM00798 AICARFT/IMPCHase bienzyme BSSX_0731 SM00851 MGS-like domain BSSX_0732 SM01209 BSSX_0732 BSSX_0732 SM01210 BSSX_0732 BSSX_0733 SM00344 helix_turn_helix ASNC type BSSX_0743 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BSSX_0743 SM00292 breast cancer carboxy-terminal domain BSSX_0743 SM00532 Ligase N family BSSX_0750 SM00845 GatB domain BSSX_0753 SM00046 Diacylglycerol kinase catalytic domain (presumed) BSSX_0769 SM00028 Tetratricopeptide repeats BSSX_0783 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSSX_0783 SM00387 Histidine kinase-like ATPases BSSX_0784 SM00342 helix_turn_helix, arabinose operon control protein BSSX_0784 SM00448 cheY-homologous receiver domain BSSX_0789 SM00342 helix_turn_helix, arabinose operon control protein BSSX_0823 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSSX_0824 SM00382 ATPases associated with a variety of cellular activities BSSX_0826 SM00422 helix_turn_helix, mercury resistance BSSX_0830 SM00382 ATPases associated with a variety of cellular activities BSSX_0831 SM00487 DEAD-like helicases superfamily BSSX_0831 SM00490 helicase superfamily c-terminal domain BSSX_0834 SM00829 Enoylreductase BSSX_0835 SM00382 ATPases associated with a variety of cellular activities BSSX_0842 SM00656 BSSX_0842 BSSX_0844 SM00387 Histidine kinase-like ATPases BSSX_0846 SM00448 cheY-homologous receiver domain BSSX_0850 SM00849 Metallo-beta-lactamase superfamily BSSX_0867 SM00642 Alpha-amylase domain BSSX_0868 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSSX_0868 SM00866 BSSX_0868 BSSX_0876 SM00226 Low molecular weight phosphatase family BSSX_0889 SM00478 endonuclease III BSSX_0896 SM00861 Transketolase, pyrimidine binding domain BSSX_0899 SM00382 ATPases associated with a variety of cellular activities BSSX_0909 SM00382 ATPases associated with a variety of cellular activities BSSX_0910 SM00382 ATPases associated with a variety of cellular activities BSSX_0914 SM00387 Histidine kinase-like ATPases BSSX_0915 SM00421 helix_turn_helix, Lux Regulon BSSX_0915 SM00448 cheY-homologous receiver domain BSSX_0917 SM00382 ATPases associated with a variety of cellular activities BSSX_0926 SM00382 ATPases associated with a variety of cellular activities BSSX_0934 SM00347 helix_turn_helix multiple antibiotic resistance protein BSSX_0949 SM00287 Bacterial SH3 domain homologues BSSX_0955 SM00478 endonuclease III BSSX_0955 SM00525 BSSX_0955 BSSX_0961 SM00382 ATPases associated with a variety of cellular activities BSSX_0995 SM01060 BSSX_0995 BSSX_0996 SM00382 ATPases associated with a variety of cellular activities BSSX_0997 SM00062 Bacterial periplasmic substrate-binding proteins BSSX_1005 SM00530 Helix-turn-helix XRE-family like proteins BSSX_1008 SM00567 E-Z type HEAT repeats BSSX_1015 SM00763 PrkA AAA domain BSSX_1017 SM00347 helix_turn_helix multiple antibiotic resistance protein BSSX_1024 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSSX_1025 SM00382 ATPases associated with a variety of cellular activities BSSX_1026 SM00382 ATPases associated with a variety of cellular activities BSSX_1028 SM00357 Cold shock protein domain BSSX_1030 SM00267 diguanylate cyclase BSSX_1035 SM00318 Staphylococcal nuclease homologues BSSX_1037 SM00363 S4 RNA-binding domain BSSX_1039 SM00116 Domain in cystathionine beta-synthase and other proteins. BSSX_1050 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BSSX_1050 SM00387 Histidine kinase-like ATPases BSSX_1051 SM00421 helix_turn_helix, Lux Regulon BSSX_1051 SM00448 cheY-homologous receiver domain BSSX_1055 SM00257 Lysin motif BSSX_1060 SM00098 Alkaline phosphatase homologues BSSX_1061 SM00257 Lysin motif BSSX_1068 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSSX_1074 SM00563 Phosphate acyltransferases BSSX_1075 SM01091 Transporter associated domain BSSX_1076 SM00422 helix_turn_helix, mercury resistance BSSX_1079 SM01091 Transporter associated domain BSSX_1091 SM00382 ATPases associated with a variety of cellular activities BSSX_1092 SM00382 ATPases associated with a variety of cellular activities BSSX_1103 SM00729 Elongator protein 3, MiaB family, Radical SAM BSSX_1109 SM00382 ATPases associated with a variety of cellular activities BSSX_1113 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BSSX_1119 SM00347 helix_turn_helix multiple antibiotic resistance protein BSSX_1125 SM00382 ATPases associated with a variety of cellular activities BSSX_1143 SM01022 BSSX_1143 BSSX_1146 SM00849 Metallo-beta-lactamase superfamily BSSX_1155 SM00829 Enoylreductase BSSX_1159 SM00855 Phosphoglycerate mutase family BSSX_1163 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSSX_1166 SM00914 BSSX_1166 BSSX_1169 SM00894 Excalibur calcium-binding domain BSSX_1176 SM00347 helix_turn_helix multiple antibiotic resistance protein BSSX_1182 SM00354 helix_turn _helix lactose operon repressor BSSX_1210 SM00342 helix_turn_helix, arabinose operon control protein BSSX_1211 SM00354 helix_turn _helix lactose operon repressor BSSX_1216 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSSX_1225 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BSSX_1232 SM00316 Ribosomal protein S1-like RNA-binding domain BSSX_1234 SM00752 Horizontally Transferred TransMembrane Domain BSSX_1252 SM00859 Semialdehyde dehydrogenase, NAD binding domain BSSX_1256 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BSSX_1257 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BSSX_1268 SM00825 Beta-ketoacyl synthase BSSX_1270 SM00382 ATPases associated with a variety of cellular activities BSSX_1271 SM00382 ATPases associated with a variety of cellular activities BSSX_1281 SM00382 ATPases associated with a variety of cellular activities BSSX_1282 SM00382 ATPases associated with a variety of cellular activities BSSX_1294 SM01118 BSSX_1294 BSSX_1296 SM00954 Region found in RelA / SpoT proteins BSSX_1362 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BSSX_1362 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BSSX_1371 SM00382 ATPases associated with a variety of cellular activities BSSX_1373 SM00835 Cupin BSSX_1381 SM00829 Enoylreductase BSSX_1385 SM00354 helix_turn _helix lactose operon repressor BSSX_1387 SM00858 BSSX_1387 BSSX_1390 SM00382 ATPases associated with a variety of cellular activities BSSX_1391 SM00028 Tetratricopeptide repeats BSSX_1394 SM00257 Lysin motif BSSX_1394 SM00644 BSSX_1394 BSSX_1399 SM00530 Helix-turn-helix XRE-family like proteins BSSX_1402 SM00382 ATPases associated with a variety of cellular activities BSSX_1421 SM00257 Lysin motif BSSX_1434 SM00257 Lysin motif BSSX_1434 SM00644 BSSX_1434 BSSX_1444 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BSSX_1449 SM00382 ATPases associated with a variety of cellular activities BSSX_1453 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BSSX_1455 SM00382 ATPases associated with a variety of cellular activities BSSX_1467 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BSSX_1471 SM00347 helix_turn_helix multiple antibiotic resistance protein BSSX_1475 SM00855 Phosphoglycerate mutase family BSSX_1481 SM00382 ATPases associated with a variety of cellular activities BSSX_1484 SM00448 cheY-homologous receiver domain BSSX_1484 SM00862 Transcriptional regulatory protein, C terminal BSSX_1485 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSSX_1485 SM00387 Histidine kinase-like ATPases BSSX_1485 SM00388 His Kinase A (phosphoacceptor) domain BSSX_1490 SM00116 Domain in cystathionine beta-synthase and other proteins. BSSX_1490 SM00924 MgtE intracellular N domain BSSX_1491 SM00422 helix_turn_helix, mercury resistance BSSX_1494 SM00347 helix_turn_helix multiple antibiotic resistance protein BSSX_1501 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen BSSX_1502 SM00052 Putative diguanylate phosphodiesterase BSSX_1502 SM00267 diguanylate cyclase BSSX_1514 SM00091 PAS domain BSSX_1514 SM00387 Histidine kinase-like ATPases BSSX_1514 SM00388 His Kinase A (phosphoacceptor) domain BSSX_1523 SM01007 Class II Aldolase and Adducin N-terminal domain BSSX_1528 SM00387 Histidine kinase-like ATPases BSSX_1528 SM00388 His Kinase A (phosphoacceptor) domain BSSX_1529 SM00347 helix_turn_helix multiple antibiotic resistance protein BSSX_1532 SM00382 ATPases associated with a variety of cellular activities BSSX_1532 SM01086 C-terminal, D2-small domain, of ClpB protein BSSX_1538 SM00257 Lysin motif BSSX_1539 SM00257 Lysin motif BSSX_1540 SM00636 BSSX_1540 BSSX_1552 SM00354 helix_turn _helix lactose operon repressor BSSX_1553 SM01061 CAT RNA binding domain BSSX_1560 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSSX_1560 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSSX_1564 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BSSX_1564 SM00091 PAS domain BSSX_1564 SM00387 Histidine kinase-like ATPases BSSX_1564 SM00388 His Kinase A (phosphoacceptor) domain BSSX_1567 SM00260 Two component signalling adaptor domain BSSX_1567 SM00448 cheY-homologous receiver domain BSSX_1571 SM00257 Lysin motif BSSX_1574 SM00052 Putative diguanylate phosphodiesterase BSSX_1595 SM00852 Probable molybdopterin binding domain BSSX_1599 SM00382 ATPases associated with a variety of cellular activities BSSX_1600 SM00382 ATPases associated with a variety of cellular activities BSSX_1603 SM00382 ATPases associated with a variety of cellular activities BSSX_1604 SM01066 Carbohydrate binding domain BSSX_1605 SM00420 helix_turn_helix, Deoxyribose operon repressor BSSX_1605 SM01134 BSSX_1605 BSSX_1610 SM00382 ATPases associated with a variety of cellular activities BSSX_1616 SM00966 SpoVT / AbrB like domain BSSX_1617 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BSSX_1617 SM00091 PAS domain BSSX_1617 SM00387 Histidine kinase-like ATPases BSSX_1617 SM00388 His Kinase A (phosphoacceptor) domain BSSX_1621 SM00849 Metallo-beta-lactamase superfamily BSSX_1629 SM00861 Transketolase, pyrimidine binding domain BSSX_1650 SM00838 Elongation factor G C-terminus BSSX_1654 SM00670 Large family of predicted nucleotide-binding domains BSSX_1659 SM00878 Biotin carboxylase C-terminal domain BSSX_1670 SM00116 Domain in cystathionine beta-synthase and other proteins. BSSX_1680 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BSSX_1693 SM00740 BSSX_1693 BSSX_1694 SM00740 BSSX_1694 BSSX_1705 SM00842 Cell division protein FtsA BSSX_1706 SM00864 Tubulin/FtsZ family, GTPase domain BSSX_1706 SM00865 Tubulin/FtsZ family, C-terminal domain BSSX_1711 SM00382 ATPases associated with a variety of cellular activities BSSX_1718 SM00363 S4 RNA-binding domain BSSX_1724 SM00363 S4 RNA-binding domain BSSX_1729 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BSSX_1730 SM00851 MGS-like domain BSSX_1730 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BSSX_1730 SM01209 BSSX_1730 BSSX_1733 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BSSX_1743 SM00831 Cation transporter/ATPase, N-terminus BSSX_1746 SM00072 Guanylate kinase homologues. BSSX_1747 SM01409 BSSX_1747 BSSX_1749 SM00487 DEAD-like helicases superfamily BSSX_1749 SM00490 helicase superfamily c-terminal domain BSSX_1754 SM00331 Sigma factor PP2C-like phosphatases BSSX_1754 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BSSX_1755 SM00220 Serine/Threonine protein kinases, catalytic domain BSSX_1755 SM00740 BSSX_1755 BSSX_1758 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain BSSX_1762 SM01120 BSSX_1762 BSSX_1762 SM01121 BSSX_1762 BSSX_1765 SM00487 DEAD-like helicases superfamily BSSX_1765 SM00490 helicase superfamily c-terminal domain BSSX_1768 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BSSX_1769 SM00822 BSSX_1769 BSSX_1771 SM00358 Double-stranded RNA binding motif BSSX_1771 SM00535 Ribonuclease III family BSSX_1772 SM00968 SMC proteins Flexible Hinge Domain BSSX_1773 SM00382 ATPases associated with a variety of cellular activities BSSX_1773 SM00962 SRP54-type protein, GTPase domain BSSX_1773 SM00963 SRP54-type protein, helical bundle domain BSSX_1776 SM00382 ATPases associated with a variety of cellular activities BSSX_1776 SM00962 SRP54-type protein, GTPase domain BSSX_1776 SM00963 SRP54-type protein, helical bundle domain BSSX_1788 SM00881 CoA binding domain BSSX_1790 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BSSX_1790 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BSSX_1790 SM00493 BSSX_1790 BSSX_1794 SM00382 ATPases associated with a variety of cellular activities BSSX_1794 SM01086 C-terminal, D2-small domain, of ClpB protein BSSX_1802 SM00382 ATPases associated with a variety of cellular activities BSSX_1812 SM00448 cheY-homologous receiver domain BSSX_1819 SM00962 SRP54-type protein, GTPase domain BSSX_1821 SM00448 cheY-homologous receiver domain BSSX_1822 SM00073 Histidine Phosphotransfer domain BSSX_1822 SM00260 Two component signalling adaptor domain BSSX_1822 SM00387 Histidine kinase-like ATPases BSSX_1822 SM01231 BSSX_1822 BSSX_1823 SM00260 Two component signalling adaptor domain BSSX_1835 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BSSX_1837 SM00479 BSSX_1837 BSSX_1837 SM00481 DNA polymerase alpha chain like domain BSSX_1839 SM00316 Ribosomal protein S1-like RNA-binding domain BSSX_1839 SM00322 K homology RNA-binding domain BSSX_1846 SM00904 Riboflavin kinase BSSX_1847 SM00316 Ribosomal protein S1-like RNA-binding domain BSSX_1847 SM00322 K homology RNA-binding domain BSSX_1854 SM00859 Semialdehyde dehydrogenase, NAD binding domain BSSX_1856 SM01130 BSSX_1856 BSSX_1857 SM00849 Metallo-beta-lactamase superfamily BSSX_1860 SM00382 ATPases associated with a variety of cellular activities BSSX_1860 SM00843 BSSX_1860 BSSX_1861 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSSX_1861 SM00866 BSSX_1861 BSSX_1869 SM00530 Helix-turn-helix XRE-family like proteins BSSX_1871 SM00852 Probable molybdopterin binding domain BSSX_1872 SM00382 ATPases associated with a variety of cellular activities BSSX_1874 SM00322 K homology RNA-binding domain BSSX_1874 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BSSX_1877 SM00829 Enoylreductase BSSX_1879 SM00729 Elongator protein 3, MiaB family, Radical SAM BSSX_1882 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BSSX_1882 SM00534 ATPase domain of DNA mismatch repair MUTS family BSSX_1883 SM00853 MutL C terminal dimerisation domain BSSX_1883 SM01340 BSSX_1883 BSSX_1888 SM00849 Metallo-beta-lactamase superfamily BSSX_1889 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BSSX_1890 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BSSX_1891 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BSSX_1893 SM00825 Beta-ketoacyl synthase BSSX_1897 SM00822 BSSX_1897 BSSX_1897 SM00823 Phosphopantetheine attachment site BSSX_1897 SM00825 Beta-ketoacyl synthase BSSX_1897 SM00826 BSSX_1897 BSSX_1897 SM01294 BSSX_1897 BSSX_1898 SM00822 BSSX_1898 BSSX_1898 SM00823 Phosphopantetheine attachment site BSSX_1898 SM00825 Beta-ketoacyl synthase BSSX_1898 SM00826 BSSX_1898 BSSX_1898 SM01294 BSSX_1898 BSSX_1899 SM00822 BSSX_1899 BSSX_1899 SM00823 Phosphopantetheine attachment site BSSX_1899 SM00825 Beta-ketoacyl synthase BSSX_1899 SM00826 BSSX_1899 BSSX_1899 SM01294 BSSX_1899 BSSX_1900 SM00822 BSSX_1900 BSSX_1900 SM00823 Phosphopantetheine attachment site BSSX_1900 SM00825 Beta-ketoacyl synthase BSSX_1900 SM00826 BSSX_1900 BSSX_1900 SM01294 BSSX_1900 BSSX_1901 SM00823 Phosphopantetheine attachment site BSSX_1901 SM00825 Beta-ketoacyl synthase BSSX_1901 SM01294 BSSX_1901 BSSX_1904 SM00849 Metallo-beta-lactamase superfamily BSSX_1921 SM00646 BSSX_1921 BSSX_1924 SM00382 ATPases associated with a variety of cellular activities BSSX_1927 SM00422 helix_turn_helix, mercury resistance BSSX_1928 SM01230 BSSX_1928 BSSX_1937 SM00860 SMI1 / KNR4 family BSSX_1954 SM00318 Staphylococcal nuclease homologues BSSX_1957 SM01005 Alanine racemase, C-terminal domain BSSX_1985 SM00257 Lysin motif BSSX_1986 SM00857 Resolvase, N terminal domain BSSX_1988 SM00861 Transketolase, pyrimidine binding domain BSSX_1993 SM00448 cheY-homologous receiver domain BSSX_2007 SM01207 BSSX_2007 BSSX_2009 SM00881 CoA binding domain BSSX_2011 SM00387 Histidine kinase-like ATPases BSSX_2011 SM00433 TopoisomeraseII BSSX_2012 SM00434 DNA Topoisomerase IV BSSX_2016 SM01067 Cellulose binding domain BSSX_2020 SM00606 Cellulose Binding Domain Type IV BSSX_2030 SM00878 Biotin carboxylase C-terminal domain BSSX_2036 SM00823 Phosphopantetheine attachment site BSSX_2036 SM00824 Thioesterase BSSX_2037 SM00823 Phosphopantetheine attachment site BSSX_2038 SM00823 Phosphopantetheine attachment site BSSX_2039 SM00823 Phosphopantetheine attachment site BSSX_2040 SM00823 Phosphopantetheine attachment site BSSX_2050 SM00829 Enoylreductase BSSX_2054 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BSSX_2058 SM00822 BSSX_2058 BSSX_2065 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BSSX_2070 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSSX_2070 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSSX_2074 SM00656 BSSX_2074 BSSX_2077 SM00835 Cupin BSSX_2084 SM00530 Helix-turn-helix XRE-family like proteins BSSX_2098 SM00860 SMI1 / KNR4 family BSSX_2100 SM00860 SMI1 / KNR4 family BSSX_2103 SM00342 helix_turn_helix, arabinose operon control protein BSSX_2106 SM00849 Metallo-beta-lactamase superfamily BSSX_2107 SM00871 Bacterial transcription activator, effector binding domain BSSX_2110 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BSSX_2118 SM00421 helix_turn_helix, Lux Regulon BSSX_2118 SM00448 cheY-homologous receiver domain BSSX_2119 SM00257 Lysin motif BSSX_2120 SM00341 Helicase and RNase D C-terminal BSSX_2120 SM00487 DEAD-like helicases superfamily BSSX_2120 SM00490 helicase superfamily c-terminal domain BSSX_2120 SM00956 BSSX_2120 BSSX_2138 SM00861 Transketolase, pyrimidine binding domain BSSX_2139 SM00327 von Willebrand factor (vWF) type A domain BSSX_2140 SM00382 ATPases associated with a variety of cellular activities BSSX_2142 SM00257 Lysin motif BSSX_2163 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BSSX_2163 SM00245 tail specific protease BSSX_2171 SM00014 Acid phosphatase homologues BSSX_2180 SM00882 Coenzyme A transferase BSSX_2181 SM00882 Coenzyme A transferase BSSX_2194 SM00347 helix_turn_helix multiple antibiotic resistance protein BSSX_2202 SM00382 ATPases associated with a variety of cellular activities BSSX_2215 SM00567 E-Z type HEAT repeats BSSX_2215 SM00932 Scaffold protein Nfu/NifU N terminal BSSX_2216 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BSSX_2220 SM00357 Cold shock protein domain BSSX_2228 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BSSX_2228 SM00475 5'-3' exonuclease BSSX_2240 SM00354 helix_turn _helix lactose operon repressor BSSX_2243 SM00491 BSSX_2243 BSSX_2245 SM00981 BSSX_2245 BSSX_2250 SM00487 DEAD-like helicases superfamily BSSX_2250 SM00490 helicase superfamily c-terminal domain BSSX_2262 SM00478 endonuclease III BSSX_2262 SM00525 BSSX_2262 BSSX_2268 SM00479 BSSX_2268 BSSX_2268 SM00487 DEAD-like helicases superfamily BSSX_2268 SM00491 BSSX_2268 BSSX_2276 SM00851 MGS-like domain BSSX_2286 SM00914 BSSX_2286 BSSX_2287 SM00028 Tetratricopeptide repeats BSSX_2300 SM00138 Methyltransferase, chemotaxis proteins BSSX_2302 SM00562 BSSX_2302 BSSX_2308 SM00411 bacterial (prokaryotic) histone like domain BSSX_2318 SM01240 BSSX_2318 BSSX_2319 SM00316 Ribosomal protein S1-like RNA-binding domain BSSX_2327 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BSSX_2332 SM00257 Lysin motif BSSX_2334 SM00487 DEAD-like helicases superfamily BSSX_2334 SM00490 helicase superfamily c-terminal domain BSSX_2343 SM00091 PAS domain BSSX_2343 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSSX_2343 SM00387 Histidine kinase-like ATPases BSSX_2343 SM00388 His Kinase A (phosphoacceptor) domain BSSX_2344 SM00448 cheY-homologous receiver domain BSSX_2344 SM00862 Transcriptional regulatory protein, C terminal BSSX_2348 SM00363 S4 RNA-binding domain BSSX_2377 SM00387 Histidine kinase-like ATPases BSSX_2379 SM00936 Penicillin-binding protein 5, C-terminal domain BSSX_2387 SM00919 Malic enzyme, NAD binding domain BSSX_2387 SM01274 BSSX_2387 BSSX_2390 SM00870 BSSX_2390 BSSX_2391 SM00530 Helix-turn-helix XRE-family like proteins BSSX_2414 SM00849 Metallo-beta-lactamase superfamily BSSX_2420 SM00849 Metallo-beta-lactamase superfamily BSSX_2422 SM01350 BSSX_2422 BSSX_2432 SM00382 ATPases associated with a variety of cellular activities BSSX_2434 SM00062 Bacterial periplasmic substrate-binding proteins BSSX_2434 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BSSX_2436 SM00046 Diacylglycerol kinase catalytic domain (presumed) BSSX_2438 SM00422 helix_turn_helix, mercury resistance BSSX_2440 SM00861 Transketolase, pyrimidine binding domain BSSX_2444 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BSSX_2446 SM00091 PAS domain BSSX_2446 SM00382 ATPases associated with a variety of cellular activities BSSX_2455 SM00646 BSSX_2455 BSSX_2460 SM00448 cheY-homologous receiver domain BSSX_2461 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BSSX_2464 SM00363 S4 RNA-binding domain BSSX_2465 SM00861 Transketolase, pyrimidine binding domain BSSX_2472 SM00878 Biotin carboxylase C-terminal domain BSSX_2481 SM00382 ATPases associated with a variety of cellular activities BSSX_2484 SM00841 Elongation factor P, C-terminal BSSX_2484 SM01185 BSSX_2484 BSSX_2491 SM00529 Helix-turn-helix diphteria tox regulatory element BSSX_2493 SM00450 Rhodanese Homology Domain BSSX_2497 SM00487 DEAD-like helicases superfamily BSSX_2497 SM00490 helicase superfamily c-terminal domain BSSX_2500 SM00530 Helix-turn-helix XRE-family like proteins BSSX_2512 SM00382 ATPases associated with a variety of cellular activities BSSX_2515 SM01091 Transporter associated domain BSSX_2520 SM00849 Metallo-beta-lactamase superfamily BSSX_2523 SM00631 BSSX_2523 BSSX_2527 SM00028 Tetratricopeptide repeats BSSX_2535 SM00382 ATPases associated with a variety of cellular activities BSSX_2536 SM00382 ATPases associated with a variety of cellular activities BSSX_2545 SM00257 Lysin motif BSSX_2552 SM00518 AP endonuclease family 2 BSSX_2553 SM00487 DEAD-like helicases superfamily BSSX_2553 SM00490 helicase superfamily c-terminal domain BSSX_2561 SM00400 zinc finger BSSX_2561 SM00493 BSSX_2561 BSSX_2564 SM00116 Domain in cystathionine beta-synthase and other proteins. BSSX_2574 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BSSX_2584 SM00729 Elongator protein 3, MiaB family, Radical SAM BSSX_2587 SM00271 DnaJ molecular chaperone homology domain BSSX_2591 SM00729 Elongator protein 3, MiaB family, Radical SAM BSSX_2592 SM00838 Elongation factor G C-terminus BSSX_2600 SM00849 Metallo-beta-lactamase superfamily BSSX_2602 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BSSX_2606 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BSSX_2608 SM01103 BSSX_2608 BSSX_2614 SM00644 BSSX_2614 BSSX_2616 SM01350 BSSX_2616 BSSX_2623 SM00388 His Kinase A (phosphoacceptor) domain BSSX_2624 SM00448 cheY-homologous receiver domain BSSX_2624 SM00862 Transcriptional regulatory protein, C terminal BSSX_2629 SM00822 BSSX_2629 BSSX_2631 SM00860 SMI1 / KNR4 family BSSX_2645 SM00347 helix_turn_helix multiple antibiotic resistance protein BSSX_2646 SM00450 Rhodanese Homology Domain BSSX_2648 SM00028 Tetratricopeptide repeats BSSX_2655 SM00422 helix_turn_helix, mercury resistance BSSX_2658 SM01091 Transporter associated domain BSSX_2669 SM00344 helix_turn_helix ASNC type BSSX_2689 SM00287 Bacterial SH3 domain homologues BSSX_2697 SM00422 helix_turn_helix, mercury resistance BSSX_2699 SM00829 Enoylreductase BSSX_2701 SM00640 Glycosyl hydrolases family 32 BSSX_2706 SM00382 ATPases associated with a variety of cellular activities BSSX_2722 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BSSX_2722 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BSSX_2728 SM00650 Ribosomal RNA adenine dimethylases BSSX_2739 SM00732 Likely ribonuclease with RNase H fold. BSSX_2741 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BSSX_2743 SM00382 ATPases associated with a variety of cellular activities BSSX_2744 SM00062 Bacterial periplasmic substrate-binding proteins BSSX_2744 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BSSX_2750 SM00382 ATPases associated with a variety of cellular activities BSSX_2751 SM00028 Tetratricopeptide repeats BSSX_2755 SM00382 ATPases associated with a variety of cellular activities BSSX_2761 SM00287 Bacterial SH3 domain homologues BSSX_2761 SM00646 BSSX_2761 BSSX_2763 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BSSX_2763 SM00954 Region found in RelA / SpoT proteins BSSX_2774 SM01323 BSSX_2774 BSSX_2778 SM00382 ATPases associated with a variety of cellular activities BSSX_2779 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BSSX_2790 SM00257 Lysin motif BSSX_2799 SM01317 BSSX_2799 BSSX_2820 SM00257 Lysin motif BSSX_2822 SM01004 Delta-aminolevulinic acid dehydratase BSSX_2829 SM00382 ATPases associated with a variety of cellular activities BSSX_2829 SM00464 Found in ATP-dependent protease La (LON) BSSX_2830 SM00382 ATPases associated with a variety of cellular activities BSSX_2831 SM00382 ATPases associated with a variety of cellular activities BSSX_2831 SM00994 ClpX C4-type zinc finger BSSX_2831 SM01086 C-terminal, D2-small domain, of ClpB protein BSSX_2837 SM01329 BSSX_2837 BSSX_2838 SM00917 LeuA allosteric (dimerisation) domain BSSX_2850 SM00909 Sporulation and spore germination BSSX_2852 SM00347 helix_turn_helix multiple antibiotic resistance protein BSSX_2853 SM00857 Resolvase, N terminal domain BSSX_2856 SM00257 Lysin motif BSSX_2856 SM00644 BSSX_2856 BSSX_2867 SM00257 Lysin motif BSSX_2901 SM00382 ATPases associated with a variety of cellular activities BSSX_2912 SM00530 Helix-turn-helix XRE-family like proteins BSSX_2914 SM00530 Helix-turn-helix XRE-family like proteins BSSX_2917 SM00421 helix_turn_helix, Lux Regulon BSSX_2924 SM00465 GIY-YIG type nucleases (URI domain) BSSX_2928 SM00813 Alpha-L-arabinofuranosidase C-terminus BSSX_2930 SM00893 Electron transfer flavoprotein domain BSSX_2931 SM00893 Electron transfer flavoprotein domain BSSX_2936 SM00463 Small MutS-related domain BSSX_2936 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BSSX_2936 SM00534 ATPase domain of DNA mismatch repair MUTS family BSSX_2937 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BSSX_2937 SM00481 DNA polymerase alpha chain like domain BSSX_2937 SM00483 DNA polymerase X family BSSX_2941 SM00873 B3/4 domain BSSX_2941 SM00874 tRNA synthetase B5 domain BSSX_2941 SM00896 Ferredoxin-fold anticodon binding domain BSSX_2944 SM00967 RNA 2'-O ribose methyltransferase substrate binding BSSX_2951 SM00813 Alpha-L-arabinofuranosidase C-terminus BSSX_2957 SM01007 Class II Aldolase and Adducin N-terminal domain BSSX_2972 SM00448 cheY-homologous receiver domain BSSX_2972 SM00850 LytTr DNA-binding domain BSSX_2973 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BSSX_2973 SM00387 Histidine kinase-like ATPases BSSX_2975 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BSSX_2979 SM00382 ATPases associated with a variety of cellular activities BSSX_2983 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BSSX_2989 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BSSX_2989 SM01232 BSSX_2989 BSSX_2990 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BSSX_2990 SM00474 3'-5' exonuclease BSSX_2990 SM00475 5'-3' exonuclease BSSX_2990 SM00482 DNA polymerase A domain BSSX_2991 SM00091 PAS domain BSSX_2991 SM00387 Histidine kinase-like ATPases BSSX_2991 SM00388 His Kinase A (phosphoacceptor) domain BSSX_2992 SM00448 cheY-homologous receiver domain BSSX_2992 SM00862 Transcriptional regulatory protein, C terminal BSSX_2994 SM01329 BSSX_2994 BSSX_3004 SM00919 Malic enzyme, NAD binding domain BSSX_3004 SM01274 BSSX_3004 BSSX_3005 SM00481 DNA polymerase alpha chain like domain BSSX_3012 SM00116 Domain in cystathionine beta-synthase and other proteins. BSSX_3015 SM00904 Riboflavin kinase BSSX_3019 SM00382 ATPases associated with a variety of cellular activities BSSX_3022 SM00062 Bacterial periplasmic substrate-binding proteins BSSX_3023 SM00062 Bacterial periplasmic substrate-binding proteins BSSX_3026 SM00849 Metallo-beta-lactamase superfamily BSSX_3031 SM00852 Probable molybdopterin binding domain BSSX_3044 SM00981 BSSX_3044 BSSX_3050 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BSSX_3051 SM00267 diguanylate cyclase BSSX_3053 SM00363 S4 RNA-binding domain BSSX_3053 SM01390 BSSX_3053 BSSX_3055 SM00363 S4 RNA-binding domain BSSX_3058 SM00116 Domain in cystathionine beta-synthase and other proteins. BSSX_3062 SM00354 helix_turn _helix lactose operon repressor BSSX_3063 SM00830 Chorismate mutase type II BSSX_3068 SM00382 ATPases associated with a variety of cellular activities BSSX_3068 SM00843 BSSX_3068 BSSX_3076 SM00919 Malic enzyme, NAD binding domain BSSX_3076 SM01274 BSSX_3076 BSSX_3077 SM00849 Metallo-beta-lactamase superfamily BSSX_3081 SM00642 Alpha-amylase domain BSSX_3082 SM00046 Diacylglycerol kinase catalytic domain (presumed) BSSX_3089 SM00382 ATPases associated with a variety of cellular activities BSSX_3091 SM00363 S4 RNA-binding domain BSSX_3101 SM00342 helix_turn_helix, arabinose operon control protein BSSX_3106 SM00729 Elongator protein 3, MiaB family, Radical SAM BSSX_3106 SM00876 Biotin and Thiamin Synthesis associated domain BSSX_3112 SM00354 helix_turn _helix lactose operon repressor BSSX_3117 SM00450 Rhodanese Homology Domain BSSX_3121 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BSSX_3121 SM00091 PAS domain BSSX_3125 SM00382 ATPases associated with a variety of cellular activities BSSX_3126 SM00387 Histidine kinase-like ATPases BSSX_3127 SM00448 cheY-homologous receiver domain BSSX_3127 SM00862 Transcriptional regulatory protein, C terminal BSSX_3129 SM00382 ATPases associated with a variety of cellular activities BSSX_3132 SM00382 ATPases associated with a variety of cellular activities BSSX_3133 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSSX_3136 SM00729 Elongator protein 3, MiaB family, Radical SAM BSSX_3148 SM00382 ATPases associated with a variety of cellular activities BSSX_3157 SM01234 BSSX_3157 BSSX_3158 SM00947 Carbonic anhydrase BSSX_3165 SM00382 ATPases associated with a variety of cellular activities BSSX_3168 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BSSX_3176 SM00984 UDP binding domain BSSX_3188 SM00642 Alpha-amylase domain BSSX_3218 SM00244 prohibitin homologues BSSX_3229 SM00047 Lysozyme subfamily 2 BSSX_3241 SM00420 helix_turn_helix, Deoxyribose operon repressor BSSX_3241 SM01134 BSSX_3241 BSSX_3242 SM01007 Class II Aldolase and Adducin N-terminal domain BSSX_3244 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSSX_3244 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSSX_3244 SM00319 Homologues of the ligand binding domain of Tar BSSX_3245 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSSX_3245 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSSX_3245 SM00319 Homologues of the ligand binding domain of Tar BSSX_3246 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSSX_3246 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSSX_3246 SM00319 Homologues of the ligand binding domain of Tar BSSX_3247 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BSSX_3247 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSSX_3247 SM00319 Homologues of the ligand binding domain of Tar BSSX_3253 SM00642 Alpha-amylase domain BSSX_3254 SM00116 Domain in cystathionine beta-synthase and other proteins. BSSX_3254 SM01091 Transporter associated domain BSSX_3265 SM00316 Ribosomal protein S1-like RNA-binding domain BSSX_3267 SM00344 helix_turn_helix ASNC type BSSX_3271 SM00387 Histidine kinase-like ATPases BSSX_3271 SM00388 His Kinase A (phosphoacceptor) domain BSSX_3272 SM01298 BSSX_3272 BSSX_3273 SM00479 BSSX_3273 BSSX_3279 SM00091 PAS domain BSSX_3279 SM00387 Histidine kinase-like ATPases BSSX_3280 SM00448 cheY-homologous receiver domain BSSX_3282 SM00382 ATPases associated with a variety of cellular activities BSSX_3295 SM00421 helix_turn_helix, Lux Regulon BSSX_3295 SM00448 cheY-homologous receiver domain BSSX_3296 SM00387 Histidine kinase-like ATPases BSSX_3301 SM00052 Putative diguanylate phosphodiesterase BSSX_3310 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BSSX_3319 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BSSX_3319 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BSSX_3321 SM00923 MbtH-like protein BSSX_3322 SM00823 Phosphopantetheine attachment site BSSX_3322 SM00824 Thioesterase BSSX_3339 SM01240 BSSX_3339 BSSX_3359 SM00729 Elongator protein 3, MiaB family, Radical SAM BSSX_3375 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BSSX_3383 SM00382 ATPases associated with a variety of cellular activities BSSX_3384 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSSX_3384 SM00866 BSSX_3384 BSSX_3390 SM00465 GIY-YIG type nucleases (URI domain) BSSX_3399 SM00382 ATPases associated with a variety of cellular activities BSSX_3405 SM00382 ATPases associated with a variety of cellular activities BSSX_3405 SM00930 BSSX_3405 BSSX_3409 SM00493 BSSX_3409 BSSX_3420 SM00347 helix_turn_helix multiple antibiotic resistance protein BSSX_3426 SM00382 ATPases associated with a variety of cellular activities BSSX_3431 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BSSX_3433 SM00448 cheY-homologous receiver domain BSSX_3433 SM00862 Transcriptional regulatory protein, C terminal BSSX_3434 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSSX_3434 SM00387 Histidine kinase-like ATPases BSSX_3434 SM00388 His Kinase A (phosphoacceptor) domain BSSX_3442 SM00421 helix_turn_helix, Lux Regulon BSSX_3442 SM00448 cheY-homologous receiver domain BSSX_3443 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSSX_3443 SM00387 Histidine kinase-like ATPases BSSX_3452 SM00382 ATPases associated with a variety of cellular activities BSSX_3458 SM00387 Histidine kinase-like ATPases BSSX_3458 SM00388 His Kinase A (phosphoacceptor) domain BSSX_3459 SM00448 cheY-homologous receiver domain BSSX_3459 SM00862 Transcriptional regulatory protein, C terminal BSSX_3464 SM00835 Cupin BSSX_3467 SM00382 ATPases associated with a variety of cellular activities BSSX_3469 SM00382 ATPases associated with a variety of cellular activities BSSX_3505 SM00316 Ribosomal protein S1-like RNA-binding domain BSSX_3505 SM00357 Cold shock protein domain BSSX_3505 SM00955 BSSX_3505 BSSX_3509 SM00530 Helix-turn-helix XRE-family like proteins BSSX_3510 SM00530 Helix-turn-helix XRE-family like proteins BSSX_3511 SM00530 Helix-turn-helix XRE-family like proteins BSSX_3520 SM00116 Domain in cystathionine beta-synthase and other proteins. BSSX_3520 SM00382 ATPases associated with a variety of cellular activities BSSX_3525 SM00116 Domain in cystathionine beta-synthase and other proteins. BSSX_3525 SM00382 ATPases associated with a variety of cellular activities BSSX_3540 SM00984 UDP binding domain BSSX_3542 SM01192 BSSX_3542 BSSX_3542 SM01193 BSSX_3542 BSSX_3546 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BSSX_3549 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSSX_3554 SM00636 BSSX_3554 BSSX_3558 SM00421 helix_turn_helix, Lux Regulon BSSX_3558 SM00448 cheY-homologous receiver domain BSSX_3561 SM00382 ATPases associated with a variety of cellular activities BSSX_3564 SM00331 Sigma factor PP2C-like phosphatases BSSX_3570 SM00354 helix_turn _helix lactose operon repressor BSSX_3572 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSSX_3572 SM00895 BSSX_3572 BSSX_3591 SM00530 Helix-turn-helix XRE-family like proteins BSSX_3602 SM00640 Glycosyl hydrolases family 32 BSSX_3609 SM00752 Horizontally Transferred TransMembrane Domain BSSX_3615 SM00642 Alpha-amylase domain BSSX_3621 SM00642 Alpha-amylase domain BSSX_3622 SM00354 helix_turn _helix lactose operon repressor BSSX_3626 SM00947 Carbonic anhydrase BSSX_3629 SM00382 ATPases associated with a variety of cellular activities BSSX_3630 SM00387 Histidine kinase-like ATPases BSSX_3631 SM00448 cheY-homologous receiver domain BSSX_3631 SM00862 Transcriptional regulatory protein, C terminal BSSX_3641 SM00028 Tetratricopeptide repeats BSSX_3642 SM00382 ATPases associated with a variety of cellular activities BSSX_3663 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSSX_3663 SM00866 BSSX_3663 BSSX_3673 SM00382 ATPases associated with a variety of cellular activities BSSX_3674 SM00487 DEAD-like helicases superfamily BSSX_3674 SM00490 helicase superfamily c-terminal domain BSSX_3679 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BSSX_3681 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BSSX_3681 SM00245 tail specific protease BSSX_3683 SM00382 ATPases associated with a variety of cellular activities BSSX_3686 SM00937 BSSX_3686 BSSX_3687 SM00957 SecA DEAD-like domain BSSX_3687 SM00958 SecA preprotein cross-linking domain BSSX_3705 SM00487 DEAD-like helicases superfamily BSSX_3705 SM00490 helicase superfamily c-terminal domain BSSX_3707 SM00421 helix_turn_helix, Lux Regulon BSSX_3707 SM00448 cheY-homologous receiver domain BSSX_3708 SM00387 Histidine kinase-like ATPases BSSX_3716 SM00984 UDP binding domain BSSX_3721 SM00646 BSSX_3721 BSSX_3731 SM00382 ATPases associated with a variety of cellular activities BSSX_3749 SM00047 Lysozyme subfamily 2 BSSX_3749 SM00287 Bacterial SH3 domain homologues BSSX_3759 SM00854 Bacterial capsule synthesis protein PGA_cap BSSX_3763 SM00354 helix_turn _helix lactose operon repressor BSSX_3766 SM00382 ATPases associated with a variety of cellular activities BSSX_3769 SM00287 Bacterial SH3 domain homologues BSSX_3779 SM00903 Flavin reductase like domain BSSX_3782 SM00344 helix_turn_helix ASNC type BSSX_3793 SM00984 UDP binding domain BSSX_3800 SM00487 DEAD-like helicases superfamily BSSX_3800 SM00490 helicase superfamily c-terminal domain BSSX_3802 SM00420 helix_turn_helix, Deoxyribose operon repressor BSSX_3802 SM01134 BSSX_3802 BSSX_3808 SM00448 cheY-homologous receiver domain BSSX_3808 SM00862 Transcriptional regulatory protein, C terminal BSSX_3809 SM00387 Histidine kinase-like ATPases BSSX_3809 SM00388 His Kinase A (phosphoacceptor) domain BSSX_3809 SM00448 cheY-homologous receiver domain BSSX_3812 SM00028 Tetratricopeptide repeats BSSX_3817 SM00347 helix_turn_helix multiple antibiotic resistance protein BSSX_3819 SM00710 Parallel beta-helix repeats BSSX_3819 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses BSSX_3825 SM00938 Nitrogen regulatory protein P-II BSSX_3826 SM00014 Acid phosphatase homologues BSSX_3834 SM00155 Phospholipase D. Active site motifs. BSSX_3835 SM00422 helix_turn_helix, mercury resistance BSSX_3847 SM00028 Tetratricopeptide repeats BSSX_3849 SM00729 Elongator protein 3, MiaB family, Radical SAM BSSX_3852 SM00327 von Willebrand factor (vWF) type A domain BSSX_3855 SM00327 von Willebrand factor (vWF) type A domain BSSX_3863 SM00382 ATPases associated with a variety of cellular activities BSSX_3877 SM00226 Low molecular weight phosphatase family BSSX_3885 SM00937 BSSX_3885 BSSX_3889 SM00919 Malic enzyme, NAD binding domain BSSX_3889 SM01274 BSSX_3889 BSSX_3892 SM00357 Cold shock protein domain BSSX_3892 SM00382 ATPases associated with a variety of cellular activities BSSX_3892 SM00959 Rho termination factor, N-terminal domain BSSX_3899 SM00448 cheY-homologous receiver domain BSSX_3905 SM00155 Phospholipase D. Active site motifs. BSSX_3909 SM00382 ATPases associated with a variety of cellular activities BSSX_3910 SM00155 Phospholipase D. Active site motifs. BSSX_3915 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BSSX_3918 SM00100 Cyclic nucleotide-monophosphate binding domain BSSX_3918 SM00419 helix_turn_helix, cAMP Regulatory protein BSSX_3920 SM00836 DALR anticodon binding domain BSSX_3920 SM01016 Arginyl tRNA synthetase N terminal dom BSSX_3923 SM00729 Elongator protein 3, MiaB family, Radical SAM BSSX_3934 SM00028 Tetratricopeptide repeats BSSX_3939 SM00382 ATPases associated with a variety of cellular activities BSSX_3947 SM00347 helix_turn_helix multiple antibiotic resistance protein BSSX_3948 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BSSX_3953 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BSSX_3975 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BSSX_3983 SM00858 BSSX_3983 BSSX_3993 SM00986 Uracil DNA glycosylase superfamily BSSX_3993 SM00987 UreE urease accessory protein, C-terminal domain BSSX_3997 SM00640 Glycosyl hydrolases family 32 BSSX_4001 SM01061 CAT RNA binding domain BSSX_4032 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BSSX_4041 SM01061 CAT RNA binding domain BSSX_4044 SM00347 helix_turn_helix multiple antibiotic resistance protein BSSX_4045 SM00363 S4 RNA-binding domain BSSX_4047 SM00954 Region found in RelA / SpoT proteins BSSX_4065 SM01060 BSSX_4065 BSSX_4068 SM00382 ATPases associated with a variety of cellular activities BSSX_4076 SM00382 ATPases associated with a variety of cellular activities BSSX_4077 SM00382 ATPases associated with a variety of cellular activities BSSX_4084 SM00382 ATPases associated with a variety of cellular activities BSSX_4094 SM00421 helix_turn_helix, Lux Regulon BSSX_4094 SM00448 cheY-homologous receiver domain BSSX_4101 SM00822 BSSX_4101 BSSX_4102 SM00882 Coenzyme A transferase BSSX_4103 SM00882 Coenzyme A transferase BSSX_4110 SM01060 BSSX_4110 BSSX_4113 SM01061 CAT RNA binding domain BSSX_4117 SM00487 DEAD-like helicases superfamily BSSX_4117 SM00490 helicase superfamily c-terminal domain BSSX_4139 SM00487 DEAD-like helicases superfamily BSSX_4139 SM00490 helicase superfamily c-terminal domain BSSX_4150 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BSSX_4152 SM01133 BSSX_4152 BSSX_4158 SM00382 ATPases associated with a variety of cellular activities BSSX_4160 SM00062 Bacterial periplasmic substrate-binding proteins BSSX_4173 SM00382 ATPases associated with a variety of cellular activities BSSX_4174 SM00387 Histidine kinase-like ATPases BSSX_4175 SM00448 cheY-homologous receiver domain BSSX_4175 SM00862 Transcriptional regulatory protein, C terminal BSSX_4186 SM00420 helix_turn_helix, Deoxyribose operon repressor BSSX_4186 SM01134 BSSX_4186 BSSX_4191 SM00387 Histidine kinase-like ATPases BSSX_4197 SM00564 beta-propeller repeat BSSX_4205 SM00347 helix_turn_helix multiple antibiotic resistance protein BSSX_4210 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSSX_4210 SM00895 BSSX_4210 BSSX_4213 SM01350 BSSX_4213 BSSX_4219 SM00345 helix_turn_helix gluconate operon transcriptional repressor BSSX_4219 SM00866 BSSX_4219 BSSX_4222 SM00382 ATPases associated with a variety of cellular activities BSSX_4224 SM00487 DEAD-like helicases superfamily BSSX_4243 SM00091 PAS domain BSSX_4243 SM00382 ATPases associated with a variety of cellular activities BSSX_4246 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BSSX_4247 SM00849 Metallo-beta-lactamase superfamily BSSX_4250 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BSSX_4250 SM00091 PAS domain BSSX_4250 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BSSX_4250 SM00387 Histidine kinase-like ATPases BSSX_4250 SM00388 His Kinase A (phosphoacceptor) domain BSSX_4251 SM00448 cheY-homologous receiver domain BSSX_4251 SM00862 Transcriptional regulatory protein, C terminal BSSX_4256 SM00788 Adenylosuccinate synthetase BSSX_4260 SM00382 ATPases associated with a variety of cellular activities BSSX_4267 SM00267 diguanylate cyclase BSSX_4273 SM01131 BSSX_4273 BSSX_4277 SM00422 helix_turn_helix, mercury resistance BSSX_4289 SM00849 Metallo-beta-lactamase superfamily BSSX_4291 SM00347 helix_turn_helix multiple antibiotic resistance protein BSSX_4299 SM00226 Low molecular weight phosphatase family BSSX_4302 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BSSX_4303 SM00530 Helix-turn-helix XRE-family like proteins BSSX_4304 SM00825 Beta-ketoacyl synthase BSSX_4311 SM01266 BSSX_4311 BSSX_4313 SM00354 helix_turn _helix lactose operon repressor BSSX_4318 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BSSX_4322 SM00470 ParB-like nuclease domain BSSX_4325 SM00470 ParB-like nuclease domain BSSX_4327 SM01228 BSSX_4327 BSSX_4329 SM00322 K homology RNA-binding domain BSSX_4329 SM00393 Putative single-stranded nucleic acids-binding domain BSSX_4329 SM01245 BSSX_4329 BSSX_p0021 SM00530 Helix-turn-helix XRE-family like proteins BSSX_p0022 SM00530 Helix-turn-helix XRE-family like proteins BSSX_p0038 SM00857 Resolvase, N terminal domain BSSX_p0048 SM00028 Tetratricopeptide repeats BSSX_p0077 SM00487 DEAD-like helicases superfamily BSSX_p0077 SM00490 helicase superfamily c-terminal domain BSSX_p0099 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BSSX_p0099 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BSSX_p0099 SM00493 BSSX_p0099