locus-tag class description CLD04_00005 IPR013159 Chromosomal replication initiator, DnaA C-terminal CLD04_00005 IPR024633 DnaA N-terminal domain CLD04_00005 IPR018312 Chromosomal replication control, initiator DnaA, conserved site CLD04_00005 IPR020591 Chromosomal replication control, initiator DnaA-like CLD04_00005 IPR038454 DnaA, N-terminal domain superfamily CLD04_00005 IPR013317 Chromosomal replication initiator protein DnaA CLD04_00005 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_00005 IPR010921 Trp repressor/replication initiator CLD04_00005 IPR003593 AAA+ ATPase domain CLD04_00005 IPR001957 Chromosomal replication control, initiator DnaA CLD04_00010 IPR001001 DNA polymerase III, beta sliding clamp CLD04_00010 IPR022635 DNA polymerase III, beta sliding clamp, C-terminal CLD04_00010 IPR022637 DNA polymerase III, beta sliding clamp, central CLD04_00010 IPR022634 DNA polymerase III, beta sliding clamp, N-terminal CLD04_00015 IPR036986 RNA-binding S4 domain superfamily CLD04_00015 IPR002942 RNA-binding S4 domain CLD04_00015 IPR014330 RNA-binding S4-related,YaaA CLD04_00020 IPR042174 DNA-binding RecF, domain 2 CLD04_00020 IPR003395 RecF/RecN/SMC, N-terminal CLD04_00020 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_00020 IPR018078 DNA-binding, RecF, conserved site CLD04_00020 IPR001238 DNA-binding, RecF CLD04_00025 IPR007169 Extracellular matrix regulatory protein A CLD04_00030 IPR001241 DNA topoisomerase, type IIA CLD04_00030 IPR034160 DNA gyrase subunit B, TOPRIM domain CLD04_00030 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 CLD04_00030 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal CLD04_00030 IPR013760 DNA topoisomerase, type IIA-like domain superfamily CLD04_00030 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLD04_00030 IPR018522 DNA topoisomerase, type IIA, conserved site CLD04_00030 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_00030 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_00030 IPR011557 DNA gyrase, subunit B CLD04_00030 IPR002288 DNA gyrase B subunit, C-terminal CLD04_00030 IPR006171 TOPRIM domain CLD04_00030 IPR020568 Ribosomal protein S5 domain 2-type fold CLD04_00035 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily CLD04_00035 IPR005743 DNA gyrase, subunit A CLD04_00035 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat CLD04_00035 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal CLD04_00035 IPR013760 DNA topoisomerase, type IIA-like domain superfamily CLD04_00035 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal CLD04_00035 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta CLD04_00065 IPR026988 YaaC-like protein CLD04_00070 IPR013785 Aldolase-type TIM barrel CLD04_00070 IPR001093 IMP dehydrogenase/GMP reductase CLD04_00070 IPR015875 IMP dehydrogenase / GMP reductase, conserved site CLD04_00070 IPR000644 CBS domain CLD04_00070 IPR005990 Inosine-5'-monophosphate dehydrogenase CLD04_00075 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal CLD04_00075 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily CLD04_00075 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal CLD04_00075 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A CLD04_00075 IPR015956 Penicillin-binding protein, C-terminal domain superfamily CLD04_00075 IPR012338 Beta-lactamase/transpeptidase-like CLD04_00080 IPR013785 Aldolase-type TIM barrel CLD04_00080 IPR001852 Pyridoxal 5'-phosphate synthase subunit PdxS/SNZ CLD04_00080 IPR033755 PdxS/SNZ N-terminal domain CLD04_00080 IPR011060 Ribulose-phosphate binding barrel CLD04_00085 IPR021196 PdxT/SNO family, conserved site CLD04_00085 IPR002161 Pyridoxal 5'-phosphate synthase subunit PdxT/SNO CLD04_00085 IPR029062 Class I glutamine amidotransferase-like CLD04_00095 IPR006195 Aminoacyl-tRNA synthetase, class II CLD04_00095 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm CLD04_00095 IPR033729 Serine-tRNA ligase catalytic core domain CLD04_00095 IPR042103 Serine-tRNA synthetase, type1, N-terminal domain superfamily CLD04_00095 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) CLD04_00095 IPR002317 Serine-tRNA ligase, type1 CLD04_00095 IPR015866 Serine-tRNA synthetase, type1, N-terminal CLD04_00105 IPR002624 Deoxynucleoside kinase CLD04_00105 IPR031314 Deoxynucleoside kinase domain CLD04_00105 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_00110 IPR031314 Deoxynucleoside kinase domain CLD04_00110 IPR002624 Deoxynucleoside kinase CLD04_00110 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_00115 IPR017853 Glycoside hydrolase superfamily CLD04_00115 IPR041704 CFLE, GH18 catalytic domain CLD04_00115 IPR011583 Chitinase II CLD04_00115 IPR029070 Chitinase insertion domain superfamily CLD04_00115 IPR001223 Glycoside hydrolase family 18, catalytic domain CLD04_00115 IPR018392 LysM domain CLD04_00115 IPR036779 LysM domain superfamily CLD04_00120 IPR036380 Isochorismatase-like superfamily CLD04_00120 IPR000868 Isochorismatase-like CLD04_00125 IPR028883 tRNA-specific adenosine deaminase CLD04_00125 IPR002125 Cytidine and deoxycytidylate deaminase domain CLD04_00125 IPR016192 APOBEC/CMP deaminase, zinc-binding CLD04_00125 IPR016193 Cytidine deaminase-like CLD04_00135 IPR012763 DNA polymerase III, subunit gamma/ tau CLD04_00135 IPR022754 DNA polymerase III, gamma subunit, domain III CLD04_00135 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal CLD04_00135 IPR001270 ClpA/B family CLD04_00135 IPR003593 AAA+ ATPase domain CLD04_00135 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_00140 IPR004401 Nucleoid-associated protein YbaB/EbfC family CLD04_00140 IPR036894 Nucleoid-associated protein YbaB-like domain superfamily CLD04_00145 IPR000093 DNA recombination protein RecR CLD04_00145 IPR034137 RecR, TOPRIM domain CLD04_00145 IPR006171 TOPRIM domain CLD04_00145 IPR015967 Recombination protein RecR, conserved site CLD04_00145 IPR023628 Recombination protein RecR, C4-type zinc finger CLD04_00145 IPR023627 Recombination protein RecR CLD04_00150 IPR019644 Protein of unknown function DUF2508 CLD04_00155 IPR010001 SigmaK-factor processing regulatory BofA CLD04_00185 IPR019700 Anti-sigma-G factor Gin CLD04_00190 IPR018770 5-bromo-4-chloroindolyl phosphate hydrolysis protein CLD04_00195 IPR008863 Toxic anion resistance CLD04_00200 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal CLD04_00200 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily CLD04_00200 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_00200 IPR000310 Orn/Lys/Arg decarboxylase, major domain CLD04_00200 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_00205 IPR018095 Thymidylate kinase, conserved site CLD04_00205 IPR018094 Thymidylate kinase CLD04_00205 IPR039430 Thymidylate kinase-like domain CLD04_00205 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_00210 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CLD04_00210 IPR011322 Nitrogen regulatory PII-like, alpha/beta CLD04_00210 IPR010375 Cyclic-di-AMP receptor CLD04_00215 IPR005585 Protein of unknown function DUF327 CLD04_00215 IPR024042 TM1646-like domain superfamily CLD04_00220 IPR015199 DNA polymerase III, delta subunit, C-terminal CLD04_00220 IPR004622 DNA polymerase III, delta prime subunit CLD04_00220 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_00225 IPR007557 PSP1, C-terminal CLD04_00230 IPR010377 Initiation control protein YabA CLD04_00235 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_00235 IPR007848 Methyltransferase small domain CLD04_00240 IPR035901 GIY-YIG endonuclease superfamily CLD04_00240 IPR000305 GIY-YIG endonuclease CLD04_00245 IPR018063 SAM-dependent methyltransferase RsmI, conserved site CLD04_00245 IPR008189 rRNA small subunit methyltransferase I CLD04_00245 IPR000878 Tetrapyrrole methylase CLD04_00245 IPR035996 Tetrapyrrole methylase superfamily CLD04_00245 IPR014777 Tetrapyrrole methylase, subdomain 1 CLD04_00245 IPR014776 Tetrapyrrole methylase, subdomain 2 CLD04_00250 IPR037914 SpoVT-AbrB domain superfamily CLD04_00250 IPR007159 SpoVT-AbrB domain CLD04_00250 IPR040678 AbrB, C-terminal CLD04_00255 IPR023457 Methionine-tRNA synthetase, type 2 CLD04_00255 IPR014758 Methionyl-tRNA synthetase CLD04_00255 IPR041872 Methionyl-tRNA synthetase, anticodon-binding domain CLD04_00255 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding CLD04_00255 IPR004495 Methionyl-tRNA synthetase, beta subunit, C-terminal CLD04_00255 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLD04_00255 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CLD04_00255 IPR002547 tRNA-binding domain CLD04_00255 IPR012340 Nucleic acid-binding, OB-fold CLD04_00255 IPR033911 Methioninyl-tRNA synthetase core domain CLD04_00255 IPR015413 Methionyl/Leucyl tRNA synthetase CLD04_00255 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding CLD04_00260 IPR001130 TatD family CLD04_00260 IPR018228 Deoxyribonuclease, TatD-related, conserved site CLD04_00260 IPR015991 Uncharacterised hydrolase TatD-type CLD04_00260 IPR032466 Metal-dependent hydrolase CLD04_00265 IPR010611 3D domain CLD04_00265 IPR007137 Resuscitation-promoting factor, domain of unknown function DUF348 CLD04_00265 IPR036908 RlpA-like domain superfamily CLD04_00265 IPR011098 G5 domain CLD04_00270 IPR034141 Ribonuclease M5-like, TOPRIM domain CLD04_00270 IPR006171 TOPRIM domain CLD04_00270 IPR004466 Ribonuclease M5 CLD04_00270 IPR025156 Ribonuclease M5, C-terminal domain CLD04_00275 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm CLD04_00275 IPR023165 rRNA adenine dimethylase-like CLD04_00275 IPR020596 Ribosomal RNA adenine methylase transferase, conserved site CLD04_00275 IPR011530 Ribosomal RNA adenine dimethylase CLD04_00275 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal CLD04_00275 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_00280 IPR008764 Peptidase U57, YabG CLD04_00285 IPR009366 Protein Veg CLD04_00290 IPR001448 Small acid-soluble spore protein, alpha/beta-type CLD04_00290 IPR038300 SASP, alpha/beta-type superfamily CLD04_00290 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site CLD04_00295 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLD04_00295 IPR020568 Ribosomal protein S5 domain 2-type fold CLD04_00295 IPR013750 GHMP kinase, C-terminal domain CLD04_00295 IPR036554 GHMP kinase, C-terminal domain superfamily CLD04_00295 IPR006204 GHMP kinase N-terminal domain CLD04_00295 IPR004424 4-diphosphocytidyl-2C-methyl-D-erythritol kinase CLD04_00300 IPR010078 Pur operon repressor CLD04_00300 IPR015265 Bacterial purine repressor, N-terminal CLD04_00300 IPR029057 Phosphoribosyltransferase-like CLD04_00300 IPR000836 Phosphoribosyltransferase domain CLD04_00300 IPR036390 Winged helix DNA-binding domain superfamily CLD04_00300 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_00305 IPR035959 RutC-like superfamily CLD04_00305 IPR006175 YjgF/YER057c/UK114 family CLD04_00305 IPR006056 RidA family CLD04_00305 IPR019897 RidA, conserved site CLD04_00310 IPR007170 Stage V sporulation protein G CLD04_00310 IPR036751 Stage V sporulation protein G superfamily CLD04_00315 IPR018357 Hexapeptide transferase, conserved site CLD04_00315 IPR001451 Hexapeptide repeat CLD04_00315 IPR038009 GlmU, C-terminal LbH domain CLD04_00315 IPR005835 Nucleotidyl transferase domain CLD04_00315 IPR029044 Nucleotide-diphospho-sugar transferases CLD04_00315 IPR005882 Bifunctional UDP-N-acetylglucosamine pyrophosphorylase/glucosamine-1-phosphate N-acetyltransferase CLD04_00315 IPR011004 Trimeric LpxA-like superfamily CLD04_00320 IPR000842 Phosphoribosyl pyrophosphate synthetase, conserved site CLD04_00320 IPR000836 Phosphoribosyltransferase domain CLD04_00320 IPR029057 Phosphoribosyltransferase-like CLD04_00320 IPR005946 Ribose-phosphate pyrophosphokinase CLD04_00320 IPR037515 Ribose-phosphate pyrophosphokinase, bacterial-type CLD04_00320 IPR029099 Ribose-phosphate pyrophosphokinase, N-terminal domain CLD04_00325 IPR011035 Ribosomal protein L25/Gln-tRNA synthetase, anti-codon-binding domain superfamily CLD04_00325 IPR020056 Ribosomal protein L25/Gln-tRNA synthetase, N-terminal CLD04_00325 IPR020057 Ribosomal protein L25, beta domain CLD04_00325 IPR037121 Ribosomal protein L25, C-terminal CLD04_00325 IPR001021 Ribosomal protein L25, long-form CLD04_00325 IPR029751 Ribosomal protein L25 CLD04_00330 IPR001328 Peptidyl-tRNA hydrolase CLD04_00330 IPR036416 Peptidyl-tRNA hydrolase superfamily CLD04_00330 IPR018171 Peptidyl-tRNA hydrolase, conserved site CLD04_00335 IPR020115 Anti-sigma-F factor Fin CLD04_00340 IPR004576 Transcription-repair coupling factor CLD04_00340 IPR036101 CarD-like/TRCF domain superfamily CLD04_00340 IPR003711 CarD-like/TRCF domain CLD04_00340 IPR011545 DEAD/DEAH box helicase domain CLD04_00340 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLD04_00340 IPR001650 Helicase, C-terminal CLD04_00340 IPR041471 UvrB, interaction domain CLD04_00340 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_00340 IPR037235 TRCF-like, C-terminal domain CLD04_00340 IPR005118 Transcription-repair-coupling factor, C-terminal domain CLD04_00345 IPR007159 SpoVT-AbrB domain CLD04_00345 IPR037914 SpoVT-AbrB domain superfamily CLD04_00345 IPR029016 GAF-like domain superfamily CLD04_00345 IPR039472 Sporulation stage V protein T, GAF domain CLD04_00345 IPR014213 Sporulation stage V, protein T CLD04_00350 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain CLD04_00350 IPR024923 Peptidoglycan biosynthesis protein, SpoVB-type CLD04_00350 IPR002797 Polysaccharide biosynthesis protein CLD04_00355 IPR000878 Tetrapyrrole methylase CLD04_00355 IPR035996 Tetrapyrrole methylase superfamily CLD04_00355 IPR014777 Tetrapyrrole methylase, subdomain 1 CLD04_00355 IPR011551 NTP pyrophosphohydrolase MazG CLD04_00355 IPR024180 Bifunctional tetrapyrrole methylase/MazG NTP pyrophosphohydrolase, predicted CLD04_00355 IPR035013 YabN, N-terminal CLD04_00355 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core CLD04_00360 IPR036986 RNA-binding S4 domain superfamily CLD04_00360 IPR002942 RNA-binding S4 domain CLD04_00360 IPR025490 RNA-binding protein, HP1423 type CLD04_00365 IPR022476 Sporulation protein YabP/YqfC CLD04_00365 IPR012504 Sporulation protein YabP CLD04_00365 IPR038705 YabP superfamily CLD04_00370 IPR014242 Spore cortex biosynthesis protein, YabQ CLD04_00370 IPR019074 Spore cortex biosynthesis protein, YabQ-like CLD04_00375 IPR007060 Septum formation initiator FtsL/DivIC CLD04_00375 IPR039076 Cell division protein DivIC CLD04_00380 IPR003029 S1 domain CLD04_00380 IPR012340 Nucleic acid-binding, OB-fold CLD04_00380 IPR022967 RNA-binding domain, S1 CLD04_00395 IPR036457 PPM-type phosphatase domain superfamily CLD04_00395 IPR014221 Sporulation stage II, protein E CLD04_00395 IPR001932 PPM-type phosphatase domain CLD04_00400 IPR036465 von Willebrand factor A-like domain superfamily CLD04_00400 IPR002035 von Willebrand factor, type A CLD04_00405 IPR017441 Protein kinase, ATP binding site CLD04_00405 IPR011009 Protein kinase-like domain superfamily CLD04_00405 IPR000719 Protein kinase domain CLD04_00410 IPR012796 Lysidine-tRNA(Ile) synthetase, C-terminal CLD04_00410 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLD04_00410 IPR011063 tRNA(Ile)-lysidine/2-thiocytidine synthase, N-terminal CLD04_00410 IPR012795 tRNA(Ile)-lysidine synthase, N-terminal CLD04_00410 IPR012094 tRNA(Ile)-lysidine synthase CLD04_00410 IPR015262 tRNA(Ile)-lysidine synthase , substrate-binding domain CLD04_00420 IPR005936 Peptidase, FtsH CLD04_00420 IPR000642 Peptidase M41 CLD04_00420 IPR011546 Peptidase M41, FtsH extracellular CLD04_00420 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_00420 IPR037219 Peptidase M41-like CLD04_00420 IPR003960 ATPase, AAA-type, conserved site CLD04_00420 IPR003593 AAA+ ATPase domain CLD04_00420 IPR041569 AAA ATPase, AAA+ lid domain CLD04_00420 IPR003959 ATPase, AAA-type, core CLD04_00425 IPR004619 Type III pantothenate kinase CLD04_00430 IPR016154 Heat shock protein Hsp33, C-terminal CLD04_00430 IPR000397 Heat shock protein Hsp33 CLD04_00430 IPR016153 Heat shock protein Hsp33, N-terminal CLD04_00435 IPR027304 Trigger factor/SurA domain superfamily CLD04_00435 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site CLD04_00435 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type CLD04_00440 IPR001926 Pyridoxal-phosphate dependent enzyme CLD04_00440 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CLD04_00440 IPR005859 Cysteine synthase CysK CLD04_00440 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site CLD04_00440 IPR005856 Cysteine synthase CLD04_00445 IPR015890 Chorismate-utilising enzyme, C-terminal CLD04_00445 IPR006805 Anthranilate synthase component I, N-terminal CLD04_00445 IPR005801 ADC synthase CLD04_00445 IPR019999 Anthranilate synthase component I-like CLD04_00450 IPR006221 Anthranilate synthase/para-aminobenzoate synthase like domain CLD04_00450 IPR017926 Glutamine amidotransferase CLD04_00450 IPR029062 Class I glutamine amidotransferase-like CLD04_00455 IPR018300 Aminotransferase, class IV, conserved site CLD04_00455 IPR001544 Aminotransferase class IV CLD04_00455 IPR017824 Aminodeoxychorismate lyase, class IV CLD04_00455 IPR036038 Aminotransferase-like, PLP-dependent enzymes CLD04_00460 IPR006390 Dihydropteroate synthase CLD04_00460 IPR011005 Dihydropteroate synthase-like CLD04_00460 IPR000489 Pterin-binding domain CLD04_00465 IPR006157 Dihydroneopterin aldolase/epimerase domain CLD04_00465 IPR006156 Dihydroneopterin aldolase CLD04_00470 IPR000550 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase, HPPK CLD04_00470 IPR035907 7,8-Dihydro-6-hydroxymethylpterin-pyrophosphokinase HPPK superfamily CLD04_00475 IPR001387 Cro/C1-type helix-turn-helix domain CLD04_00475 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLD04_00480 IPR004652 tRNA-dihydrouridine synthase, TIM-barrel, NifR3 CLD04_00480 IPR001269 tRNA-dihydrouridine synthase CLD04_00480 IPR024036 tRNA-dihydrouridine synthase, putative, C-terminal CLD04_00480 IPR018517 tRNA-dihydrouridine synthase, conserved site CLD04_00480 IPR013785 Aldolase-type TIM barrel CLD04_00480 IPR035587 DUS-like, FMN-binding domain CLD04_00485 IPR012340 Nucleic acid-binding, OB-fold CLD04_00485 IPR018149 Lysyl-tRNA synthetase, class II, C-terminal CLD04_00485 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type CLD04_00485 IPR034762 Bacterial/eukaryotic lysine-tRNA ligase, class II CLD04_00485 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) CLD04_00485 IPR006195 Aminoacyl-tRNA synthetase, class II CLD04_00485 IPR002313 Lysine-tRNA ligase, class II CLD04_00565 IPR041902 CtsR, N-terminal domain superfamily CLD04_00565 IPR041908 CtsR, C-terminal domain superfamily CLD04_00565 IPR041473 CtsR, C-terminal dimerization domain CLD04_00565 IPR008463 Transcriptional regulator CtsR CLD04_00565 IPR040465 CtsR, N-terminal HTH domain CLD04_00570 IPR036876 UVR domain superfamily CLD04_00570 IPR001943 UVR domain CLD04_00570 IPR025542 YacH protein CLD04_00575 IPR023660 Protein arginine kinase CLD04_00575 IPR022414 ATP:guanido phosphotransferase, catalytic domain CLD04_00575 IPR000749 ATP:guanido phosphotransferase CLD04_00575 IPR022415 ATP:guanido phosphotransferase active site CLD04_00575 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain CLD04_00580 IPR003593 AAA+ ATPase domain CLD04_00580 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_00580 IPR041546 ClpA/ClpB, AAA lid domain CLD04_00580 IPR001943 UVR domain CLD04_00580 IPR028299 ClpA/B, conserved site 2 CLD04_00580 IPR003959 ATPase, AAA-type, core CLD04_00580 IPR019489 Clp ATPase, C-terminal CLD04_00580 IPR036628 Clp, N-terminal domain superfamily CLD04_00580 IPR004176 Clp, N-terminal CLD04_00580 IPR001270 ClpA/B family CLD04_00580 IPR018368 ClpA/B, conserved site 1 CLD04_00585 IPR041166 LapB, rubredoxin metal binding domain CLD04_00585 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLD04_00585 IPR020568 Ribosomal protein S5 domain 2-type fold CLD04_00585 IPR003593 AAA+ ATPase domain CLD04_00585 IPR004504 DNA repair protein RadA CLD04_00585 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain CLD04_00585 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_00590 IPR003390 DNA integrity scanning protein, DisA, N-terminal CLD04_00590 IPR018906 DNA integrity scanning, DisA, linker region CLD04_00590 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily CLD04_00590 IPR038331 DisA, linker domain superfamily CLD04_00590 IPR010994 RuvA domain 2-like CLD04_00590 IPR023763 DNA integrity scanning protein, DisA CLD04_00595 IPR002792 TRAM domain CLD04_00595 IPR002716 PIN domain CLD04_00595 IPR029060 PIN-like domain superfamily CLD04_00600 IPR029044 Nucleotide-diphospho-sugar transferases CLD04_00600 IPR034683 Cytidylyltransferase IspD/TarI CLD04_00600 IPR001228 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CLD04_00600 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site CLD04_00605 IPR036571 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase superfamily CLD04_00605 IPR003526 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase CLD04_00605 IPR020555 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, conserved site CLD04_00610 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLD04_00610 IPR033910 Glutamyl-tRNA synthetase CLD04_00610 IPR000924 Glutamyl/glutaminyl-tRNA synthetase CLD04_00610 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CLD04_00610 IPR020751 Aminoacyl-tRNA synthetase, class I, anticodon-binding domain, subdomain 2 CLD04_00610 IPR008925 Aminoacyl-tRNA synthetase, class I, anticodon-binding CLD04_00610 IPR004527 Glutamate-tRNA ligase, bacterial/mitochondrial CLD04_00610 IPR020058 Glutamyl/glutaminyl-tRNA synthetase, class Ib, catalytic domain CLD04_00620 IPR011004 Trimeric LpxA-like superfamily CLD04_00620 IPR005881 Serine O-acetyltransferase CLD04_00620 IPR042122 Serine acetyltransferase, N-terminal domain superfamily CLD04_00620 IPR010493 Serine acetyltransferase, N-terminal CLD04_00620 IPR018357 Hexapeptide transferase, conserved site CLD04_00620 IPR001451 Hexapeptide repeat CLD04_00625 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLD04_00625 IPR032678 tRNA synthetases class I, catalytic domain CLD04_00625 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding CLD04_00625 IPR015803 Cysteine-tRNA ligase CLD04_00625 IPR024909 Cysteinyl-tRNA synthetase/mycothiol ligase CLD04_00625 IPR015273 Cysteinyl-tRNA synthetase, class Ia, DALR CLD04_00630 IPR000999 Ribonuclease III domain CLD04_00630 IPR008226 Mini-ribonuclease 3 family CLD04_00630 IPR036389 Ribonuclease III, endonuclease domain superfamily CLD04_00635 IPR004441 RNA methyltransferase TrmH family CLD04_00635 IPR029028 Alpha/beta knot methyltransferases CLD04_00635 IPR029064 50S ribosomal protein L30e-like CLD04_00635 IPR001537 tRNA/rRNA methyltransferase, SpoU type CLD04_00635 IPR013123 RNA 2-O ribose methyltransferase, substrate binding CLD04_00635 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CLD04_00640 IPR010298 Protein of unknown function DUF901 CLD04_00645 IPR014284 RNA polymerase sigma-70 like domain CLD04_00645 IPR014218 RNA polymerase sigma-H type CLD04_00645 IPR016371 RNA polymerase sigma-H factor CLD04_00645 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 CLD04_00645 IPR013325 RNA polymerase sigma factor, region 2 CLD04_00645 IPR000792 Transcription regulator LuxR, C-terminal CLD04_00645 IPR007627 RNA polymerase sigma-70 region 2 CLD04_00645 IPR013324 RNA polymerase sigma factor, region 3/4-like CLD04_00645 IPR000943 RNA polymerase sigma-70 CLD04_00650 IPR038584 Ribosomal protein L33 superfamily CLD04_00650 IPR011332 Zinc-binding ribosomal protein CLD04_00650 IPR001705 Ribosomal protein L33 CLD04_00650 IPR018264 Ribosomal protein L33, conserved site CLD04_00655 IPR005807 SecE subunit of protein translocation complex, bacterial-like CLD04_00655 IPR001901 Protein translocase complex, SecE/Sec61-gamma subunit CLD04_00655 IPR038379 SecE superfamily CLD04_00660 IPR036735 NusG, N-terminal domain superfamily CLD04_00660 IPR005824 KOW CLD04_00660 IPR014722 Ribosomal protein L2, domain 2 CLD04_00660 IPR008991 Translation protein SH3-like domain superfamily CLD04_00660 IPR015869 Transcription antitermination protein, NusG, bacteria, conserved site CLD04_00660 IPR001062 Transcription antitermination protein, NusG CLD04_00660 IPR006645 NusG, N-terminal CLD04_00665 IPR036769 Ribosomal protein L11, C-terminal domain superfamily CLD04_00665 IPR020784 Ribosomal protein L11, N-terminal CLD04_00665 IPR020785 Ribosomal protein L11, conserved site CLD04_00665 IPR020783 Ribosomal protein L11, C-terminal CLD04_00665 IPR006519 Ribosomal protein L11, bacterial-type CLD04_00665 IPR036796 Ribosomal protein L11/L12, N-terminal domain superfamily CLD04_00665 IPR000911 Ribosomal protein L11/L12 CLD04_00670 IPR023674 Ribosomal protein L1-like CLD04_00670 IPR016095 Ribosomal protein L1, 3-layer alpha/beta-sandwich CLD04_00670 IPR028364 Ribosomal protein L1/ribosomal biogenesis protein CLD04_00670 IPR005878 Ribosomal protein L1, bacterial-type CLD04_00670 IPR023673 Ribosomal protein L1, conserved site CLD04_00670 IPR002143 Ribosomal protein L1 CLD04_00675 IPR002363 Ribosomal protein L10, eubacterial, conserved site CLD04_00675 IPR001790 Ribosomal protein L10P CLD04_00675 IPR022973 Ribosomal protein L10 CLD04_00680 IPR014719 Ribosomal protein L7/L12, C-terminal/adaptor protein ClpS-like CLD04_00680 IPR013823 Ribosomal protein L7/L12, C-terminal CLD04_00680 IPR000206 Ribosomal protein L7/L12 CLD04_00680 IPR036235 Ribosomal protein L7/L12, oligomerisation domain superfamily CLD04_00680 IPR008932 Ribosomal protein L7/L12, oligomerisation CLD04_00685 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_00685 IPR007848 Methyltransferase small domain CLD04_00690 IPR042107 DNA-directed RNA polymerase, beta subunit, external 1 domain superfamily CLD04_00690 IPR007121 RNA polymerase, beta subunit, conserved site CLD04_00690 IPR037033 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain superfamily CLD04_00690 IPR007120 DNA-directed RNA polymerase, subunit 2, hybrid-binding domain CLD04_00690 IPR007644 RNA polymerase, beta subunit, protrusion CLD04_00690 IPR007642 RNA polymerase Rpb2, domain 2 CLD04_00690 IPR037034 RNA polymerase Rpb2, domain 2 superfamily CLD04_00690 IPR007645 RNA polymerase Rpb2, domain 3 CLD04_00690 IPR007641 RNA polymerase Rpb2, domain 7 CLD04_00690 IPR014724 RNA polymerase Rpb2, OB-fold CLD04_00690 IPR015712 DNA-directed RNA polymerase, subunit 2 CLD04_00690 IPR019462 DNA-directed RNA polymerase, beta subunit, external 1 domain CLD04_00690 IPR010243 DNA-directed RNA polymerase beta subunit, bacterial-type CLD04_00695 IPR038120 RNA polymerase Rpb1, funnel domain superfamily CLD04_00695 IPR007081 RNA polymerase Rpb1, domain 5 CLD04_00695 IPR007083 RNA polymerase Rpb1, domain 4 CLD04_00695 IPR042102 RNA polymerase Rpb1, domain 3 superfamily CLD04_00695 IPR007066 RNA polymerase Rpb1, domain 3 CLD04_00695 IPR007080 RNA polymerase Rpb1, domain 1 CLD04_00695 IPR006592 RNA polymerase, N-terminal CLD04_00695 IPR000722 RNA polymerase, alpha subunit CLD04_00695 IPR012754 DNA-directed RNA polymerase, subunit beta-prime CLD04_00700 IPR029064 50S ribosomal protein L30e-like CLD04_00700 IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 CLD04_00700 IPR000948 Ribosomal protein L7Ae, prokaryotes CLD04_00700 IPR023460 Ribosomal protein L7Ae, putative CLD04_00705 IPR005679 Ribosomal protein S12, bacterial-type CLD04_00705 IPR012340 Nucleic acid-binding, OB-fold CLD04_00705 IPR006032 Ribosomal protein S12/S23 CLD04_00710 IPR000235 Ribosomal protein S5/S7 CLD04_00710 IPR036823 Ribosomal protein S7 domain superfamily CLD04_00710 IPR023798 Ribosomal protein S7 domain CLD04_00710 IPR020606 Ribosomal protein S7, conserved site CLD04_00710 IPR005717 Ribosomal protein S7, bacterial/organellar-type CLD04_00715 IPR005225 Small GTP-binding protein domain CLD04_00715 IPR000795 Transcription factor, GTP-binding domain CLD04_00715 IPR009000 Translation protein, beta-barrel domain superfamily CLD04_00715 IPR004540 Translation elongation factor EFG/EF2 CLD04_00715 IPR005517 Translation elongation factor EFG/EF2, domain IV CLD04_00715 IPR020568 Ribosomal protein S5 domain 2-type fold CLD04_00715 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLD04_00715 IPR000640 Elongation factor EFG, domain V-like CLD04_00715 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_00715 IPR031157 Tr-type G domain, conserved site CLD04_00715 IPR004161 Translation elongation factor EFTu-like, domain 2 CLD04_00715 IPR035649 EFG, domain V CLD04_00715 IPR035647 EF-G domain III/V-like CLD04_00715 IPR009022 Elongation factor G, domain III CLD04_00715 IPR041095 Elongation Factor G, domain II CLD04_00720 IPR005225 Small GTP-binding protein domain CLD04_00720 IPR009001 Translation elongation factor EF1A/initiation factor IF2gamma, C-terminal CLD04_00720 IPR009000 Translation protein, beta-barrel domain superfamily CLD04_00720 IPR000795 Transcription factor, GTP-binding domain CLD04_00720 IPR004160 Translation elongation factor EFTu/EF1A, C-terminal CLD04_00720 IPR004541 Translation elongation factor EFTu/EF1A, bacterial/organelle CLD04_00720 IPR031157 Tr-type G domain, conserved site CLD04_00720 IPR033720 Elongation factor Tu, domain 2 CLD04_00720 IPR041709 Elongation factor Tu (EF-Tu), GTP-binding domain CLD04_00720 IPR004161 Translation elongation factor EFTu-like, domain 2 CLD04_00720 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_00725 IPR029058 Alpha/Beta hydrolase fold CLD04_00725 IPR022742 Serine aminopeptidase, S33 CLD04_00725 IPR002410 Peptidase S33 CLD04_00730 IPR036838 Ribosomal protein S10 domain superfamily CLD04_00730 IPR018268 Ribosomal protein S10, conserved site CLD04_00730 IPR001848 Ribosomal protein S10 CLD04_00730 IPR027486 Ribosomal protein S10 domain CLD04_00735 IPR019926 Ribosomal protein L3, conserved site CLD04_00735 IPR000597 Ribosomal protein L3 CLD04_00735 IPR019927 Ribosomal protein L3, bacterial/organelle-type CLD04_00735 IPR009000 Translation protein, beta-barrel domain superfamily CLD04_00740 IPR013005 50S ribosomal protein uL4 CLD04_00740 IPR002136 Ribosomal protein L4/L1e CLD04_00740 IPR023574 Ribosomal protein L4 domain superfamily CLD04_00745 IPR012678 Ribosomal protein L23/L15e core domain superfamily CLD04_00745 IPR001014 Ribosomal protein L23/L25, conserved site CLD04_00745 IPR013025 Ribosomal protein L25/L23 CLD04_00745 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily CLD04_00750 IPR008991 Translation protein SH3-like domain superfamily CLD04_00750 IPR014726 Ribosomal protein L2, domain 3 CLD04_00750 IPR022671 Ribosomal protein L2, conserved site CLD04_00750 IPR022669 Ribosomal protein L2, C-terminal CLD04_00750 IPR005880 Ribosomal protein L2, bacterial/organellar-type CLD04_00750 IPR002171 Ribosomal protein L2 CLD04_00750 IPR014722 Ribosomal protein L2, domain 2 CLD04_00750 IPR022666 Ribosomal Proteins L2, RNA binding domain CLD04_00750 IPR012340 Nucleic acid-binding, OB-fold CLD04_00755 IPR002222 Ribosomal protein S19/S15 CLD04_00755 IPR005732 Ribosomal protein S19, bacterial-type CLD04_00755 IPR020934 Ribosomal protein S19 conserved site CLD04_00755 IPR023575 Ribosomal protein S19, superfamily CLD04_00760 IPR001063 Ribosomal protein L22/L17 CLD04_00760 IPR036394 Ribosomal protein L22/L17 superfamily CLD04_00760 IPR018260 Ribosomal protein L22/L17, conserved site CLD04_00760 IPR005727 Ribosomal protein L22, bacterial/chloroplast-type CLD04_00765 IPR036419 Ribosomal protein S3, C-terminal domain superfamily CLD04_00765 IPR004087 K Homology domain CLD04_00765 IPR018280 Ribosomal protein S3, conserved site CLD04_00765 IPR001351 Ribosomal protein S3, C-terminal CLD04_00765 IPR005704 Ribosomal protein S3, bacterial-type CLD04_00765 IPR015946 K homology domain-like, alpha/beta CLD04_00765 IPR004044 K Homology domain, type 2 CLD04_00765 IPR009019 K homology domain superfamily, prokaryotic type CLD04_00770 IPR020798 Ribosomal protein L16, conserved site CLD04_00770 IPR000114 Ribosomal protein L16 CLD04_00770 IPR016180 Ribosomal protein L10e/L16 CLD04_00770 IPR036920 Ribosomal protein L10e/L16 superfamily CLD04_00775 IPR001854 Ribosomal protein L29/L35 CLD04_00775 IPR036049 Ribosomal protein L29/L35 superfamily CLD04_00775 IPR018254 Ribosomal protein L29, conserved site CLD04_00780 IPR000266 Ribosomal protein S17/S11 CLD04_00780 IPR019979 Ribosomal protein S17, conserved site CLD04_00780 IPR019984 30S ribosomal protein S17 CLD04_00780 IPR012340 Nucleic acid-binding, OB-fold CLD04_00785 IPR005745 Ribosomal protein L14P, bacterial-type CLD04_00785 IPR019972 Ribosomal protein L14P, conserved site CLD04_00785 IPR036853 Ribosomal protein L14 superfamily CLD04_00785 IPR000218 Ribosomal protein L14P CLD04_00790 IPR005825 Ribosomal protein L24/L26, conserved site CLD04_00790 IPR008991 Translation protein SH3-like domain superfamily CLD04_00790 IPR041988 Ribosomal Protein L26/L24, KOW domain CLD04_00790 IPR014722 Ribosomal protein L2, domain 2 CLD04_00790 IPR003256 Ribosomal protein L24 CLD04_00790 IPR005824 KOW CLD04_00795 IPR020930 Ribosomal protein L5, bacterial-type CLD04_00795 IPR002132 Ribosomal protein L5 CLD04_00795 IPR022803 Ribosomal protein L5 domain superfamily CLD04_00795 IPR031310 Ribosomal protein L5, N-terminal CLD04_00795 IPR020929 Ribosomal protein L5, conserved site CLD04_00795 IPR031309 Ribosomal protein L5, C-terminal CLD04_00800 IPR023053 Ribosomal protein S14, type Z CLD04_00800 IPR018271 Ribosomal protein S14, conserved site CLD04_00800 IPR001209 Ribosomal protein S14 CLD04_00805 IPR035987 Ribosomal protein S8 superfamily CLD04_00805 IPR000630 Ribosomal protein S8 CLD04_00810 IPR002358 Ribosomal protein L6, conserved site CLD04_00810 IPR019906 Ribosomal protein L6, bacterial-type CLD04_00810 IPR036789 Ribosomal protein L6, alpha-beta domain superfamily CLD04_00810 IPR020040 Ribosomal protein L6, alpha-beta domain CLD04_00810 IPR000702 Ribosomal protein L6 CLD04_00815 IPR005484 Ribosomal protein L18 CLD04_00815 IPR004389 Ribosomal protein L18, bacterial-type CLD04_00820 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLD04_00820 IPR013810 Ribosomal protein S5, N-terminal CLD04_00820 IPR018192 Ribosomal protein S5, N-terminal, conserved site CLD04_00820 IPR020568 Ribosomal protein S5 domain 2-type fold CLD04_00820 IPR005324 Ribosomal protein S5, C-terminal CLD04_00820 IPR005712 Ribosomal protein S5, bacterial-type CLD04_00820 IPR000851 Ribosomal protein S5 CLD04_00825 IPR036919 Ribosomal protein L30, ferredoxin-like fold domain superfamily CLD04_00825 IPR016082 Ribosomal protein L30, ferredoxin-like fold domain CLD04_00825 IPR018038 Ribosomal protein L30, conserved site CLD04_00825 IPR005996 Ribosomal protein L30, bacterial-type CLD04_00830 IPR021131 Ribosomal protein L18e/L15P CLD04_00830 IPR001196 Ribosomal protein L15, conserved site CLD04_00830 IPR005749 Ribosomal protein L15, bacterial-type CLD04_00830 IPR030878 Ribosomal protein L15 CLD04_00830 IPR036227 Ribosomal L18e/L15P superfamily CLD04_00835 IPR023201 SecY domain superfamily CLD04_00835 IPR030659 SecY conserved site CLD04_00835 IPR002208 SecY/SEC61-alpha family CLD04_00835 IPR026593 Protein translocase subunit SecY CLD04_00840 IPR006259 Adenylate kinase subfamily CLD04_00840 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_00840 IPR033690 Adenylate kinase, conserved site CLD04_00840 IPR000850 Adenylate kinase/UMP-CMP kinase CLD04_00840 IPR007862 Adenylate kinase, active site lid domain CLD04_00845 IPR036005 Creatinase/aminopeptidase-like CLD04_00845 IPR000994 Peptidase M24 CLD04_00845 IPR001714 Peptidase M24, methionine aminopeptidase CLD04_00845 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 CLD04_00855 IPR012340 Nucleic acid-binding, OB-fold CLD04_00855 IPR022967 RNA-binding domain, S1 CLD04_00855 IPR006196 RNA-binding domain, S1, IF1 type CLD04_00855 IPR004368 Translation initiation factor IF-1 CLD04_00860 IPR000473 Ribosomal protein L36 CLD04_00860 IPR035977 Ribosomal protein L36 superfamily CLD04_00865 IPR027437 30s ribosomal protein S13, C-terminal CLD04_00865 IPR001892 Ribosomal protein S13 CLD04_00865 IPR018269 Ribosomal protein S13, conserved site CLD04_00865 IPR010979 Ribosomal protein S13-like, H2TH CLD04_00865 IPR019980 Ribosomal protein S13, bacterial-type CLD04_00870 IPR001971 Ribosomal protein S11 CLD04_00870 IPR036967 Ribosomal protein S11 superfamily CLD04_00870 IPR019981 Ribosomal protein S11, bacterial-type CLD04_00870 IPR018102 Ribosomal S11, conserved site CLD04_00875 IPR036603 RNA polymerase, RBP11-like subunit CLD04_00875 IPR036643 DNA-directed RNA polymerase, insert domain superfamily CLD04_00875 IPR011260 RNA polymerase, alpha subunit, C-terminal CLD04_00875 IPR011263 DNA-directed RNA polymerase, RpoA/D/Rpb3-type CLD04_00875 IPR011262 DNA-directed RNA polymerase, insert domain CLD04_00875 IPR011773 DNA-directed RNA polymerase, alpha subunit CLD04_00880 IPR036373 Ribosomal protein L17 superfamily CLD04_00880 IPR000456 Ribosomal protein L17 CLD04_00885 IPR015856 ABC transporter, CbiO/EcfA subunit CLD04_00885 IPR003593 AAA+ ATPase domain CLD04_00885 IPR003439 ABC transporter-like CLD04_00885 IPR030947 Energy-coupling factor transporter ATP-binding protein EcfA1 CLD04_00885 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_00885 IPR017871 ABC transporter, conserved site CLD04_00890 IPR003593 AAA+ ATPase domain CLD04_00890 IPR030946 Energy-coupling factor transporter ATP-binding protein EcfA2 CLD04_00890 IPR015856 ABC transporter, CbiO/EcfA subunit CLD04_00890 IPR017871 ABC transporter, conserved site CLD04_00890 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_00890 IPR003439 ABC transporter-like CLD04_00895 IPR024919 ECF transporter transmembrane protein EcfT CLD04_00895 IPR003339 ABC/ECF transporter, transmembrane component CLD04_00900 IPR020103 Pseudouridine synthase, catalytic domain superfamily CLD04_00900 IPR001406 Pseudouridine synthase I, TruA CLD04_00900 IPR020095 Pseudouridine synthase I, TruA, C-terminal CLD04_00900 IPR020097 Pseudouridine synthase I, TruA, alpha/beta domain CLD04_00905 IPR005823 Ribosomal protein L13, bacterial-type CLD04_00905 IPR023563 Ribosomal protein L13, conserved site CLD04_00905 IPR036899 Ribosomal protein L13 superfamily CLD04_00905 IPR005822 Ribosomal protein L13 CLD04_00910 IPR020574 Ribosomal protein S9, conserved site CLD04_00910 IPR023035 Ribosomal protein S9, bacterial/plastid CLD04_00910 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLD04_00910 IPR020568 Ribosomal protein S5 domain 2-type fold CLD04_00910 IPR000754 Ribosomal protein S9 CLD04_00920 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_00920 IPR013216 Methyltransferase type 11 CLD04_00925 IPR019667 Uncharacterised protein family YbaK CLD04_00930 IPR014234 N-acetylmuramoyl-L-alanine amidase CwlD CLD04_00930 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain CLD04_00935 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 CLD04_00935 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_00935 IPR000808 Mrp, conserved site CLD04_00935 IPR019591 Mrp/NBP35 ATP-binding protein CLD04_00940 IPR041262 Spore germination GerD, central core domain CLD04_00945 IPR024164 KinB-signalling pathway activation protein CLD04_00950 IPR002509 NodB homology domain CLD04_00950 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel CLD04_00950 IPR014132 Sporulation polysaccharide deacetylase, PdaB CLD04_00985 IPR010359 IrrE N-terminal-like domain CLD04_00995 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLD04_00995 IPR001387 Cro/C1-type helix-turn-helix domain CLD04_01055 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_01055 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily CLD04_01055 IPR003593 AAA+ ATPase domain CLD04_01055 IPR007693 DNA helicase, DnaB-like, N-terminal CLD04_01055 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal CLD04_01055 IPR007694 DNA helicase, DnaB-like, C-terminal CLD04_01055 IPR007692 DNA helicase, DnaB type CLD04_01065 IPR036614 Holliday junction resolvase RusA-like superfamily CLD04_01065 IPR008822 Holliday junction resolvase RusA-like CLD04_01130 IPR001525 C-5 cytosine methyltransferase CLD04_01130 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site CLD04_01130 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_01130 IPR018117 DNA methylase, C-5 cytosine-specific, active site CLD04_01150 IPR035413 Phage terminase large subunit, C-terminal CLD04_01150 IPR006437 Bacteriophage terminase, large subunit CLD04_01150 IPR035412 Phage terminase large subunit, N-terminal CLD04_01155 IPR006944 Bacteriophage/Gene transfer agent portal protein CLD04_01155 IPR016753 Phage portal protein PBSX family, Firmicutes CLD04_01155 IPR006430 Phage portal protein PBSX family CLD04_01160 IPR006528 Phage head morphogenesis domain CLD04_01170 IPR027924 Phage-like element PBSX protein, XkdF CLD04_01175 IPR024455 Phage capsid CLD04_01180 IPR027926 Uncharacterised protein YqbF domain CLD04_01180 IPR036269 Rho termination factor, N-terminal domain superfamily CLD04_01180 IPR036840 YqbF domain superfamily CLD04_01185 IPR013514 Protein of unknown function DUF3199, YqbG CLD04_01185 IPR036558 YqbG-like superfamily CLD04_01190 IPR038667 XkdH-like superfamily CLD04_01190 IPR024556 Protein of unknown function DUF3599 CLD04_01195 IPR010064 Bacteriophage HK97-gp10, putative tail-component CLD04_01210 IPR035089 Tail sheath protein, subtilisin-like domain CLD04_01210 IPR035326 Phage tail sheath protein, beta-sandwich domain CLD04_01210 IPR020287 Tail sheath protein, C-terminal domain CLD04_01215 IPR018989 Phage tail tube protein CLD04_01215 IPR038628 XkdM-like superfamily CLD04_01220 IPR014986 Clostridium phage phiCD119, XkdN CLD04_01220 IPR038559 Clostridium phage phiCD119, XkdN superfamily CLD04_01230 IPR023346 Lysozyme-like domain superfamily CLD04_01230 IPR008258 Transglycosylase SLT domain 1 CLD04_01235 IPR018392 LysM domain CLD04_01235 IPR036779 LysM domain superfamily CLD04_01245 IPR022555 Protein of unknown function, DUF2577 CLD04_01250 IPR020288 Protein of unknown function DUF2634 CLD04_01255 IPR006949 Baseplate protein J-like CLD04_01260 IPR018755 Bacteriophage Mu-like, Gp48 CLD04_01270 IPR008983 Tumour necrosis factor-like domain superfamily CLD04_01275 IPR035950 XkdW-like superfamily CLD04_01275 IPR019094 Bacteriophage SP-beta, YorD CLD04_01280 IPR010022 Protein of unknown function XkdX CLD04_01290 IPR019715 Haemolysin XhlA CLD04_01295 IPR006479 Holin CLD04_01300 IPR002502 N-acetylmuramoyl-L-alanine amidase domain CLD04_01300 IPR018392 LysM domain CLD04_01300 IPR036779 LysM domain superfamily CLD04_01300 IPR002477 Peptidoglycan binding-like CLD04_01300 IPR036366 PGBD superfamily CLD04_01300 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily CLD04_01300 IPR036365 PGBD-like superfamily CLD04_01310 IPR026834 LHH CLD04_01310 IPR006829 LXG domain CLD04_01320 IPR011990 Tetratricopeptide-like helical domain superfamily CLD04_01320 IPR013026 Tetratricopeptide repeat-containing domain CLD04_01320 IPR040702 Response regulator aspartate phosphatase, N-terminal CLD04_01320 IPR019734 Tetratricopeptide repeat CLD04_01325 IPR014962 YolD-like protein CLD04_01335 IPR036390 Winged helix DNA-binding domain superfamily CLD04_01335 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_01335 IPR015927 Peptidase S24/S26A/S26B/S26C CLD04_01335 IPR006197 Peptidase S24, LexA-like CLD04_01335 IPR006199 LexA repressor, DNA-binding domain CLD04_01335 IPR036286 LexA/Signal peptidase-like superfamily CLD04_01335 IPR039418 LexA-like CLD04_01335 IPR006200 Transcription regulator LexA CLD04_01395 IPR018045 Sulphate anion transporter, conserved site CLD04_01395 IPR036513 STAS domain superfamily CLD04_01395 IPR002645 STAS domain CLD04_01395 IPR001902 SLC26A/SulP transporter CLD04_01395 IPR011547 SLC26A/SulP transporter domain CLD04_01400 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 CLD04_01400 IPR038770 Sodium/solute symporter superfamily CLD04_01400 IPR004710 Bile acid:sodium symporter CLD04_01405 IPR000801 Putative esterase CLD04_01405 IPR029058 Alpha/Beta hydrolase fold CLD04_01410 IPR000522 ABC transporter, permease protein, BtuC-like CLD04_01410 IPR037294 ABC transporter, BtuC-like CLD04_01415 IPR037294 ABC transporter, BtuC-like CLD04_01415 IPR000522 ABC transporter, permease protein, BtuC-like CLD04_01420 IPR002491 ABC transporter periplasmic binding domain CLD04_01425 IPR009057 Homeobox-like domain superfamily CLD04_01425 IPR002491 ABC transporter periplasmic binding domain CLD04_01425 IPR018060 DNA binding HTH domain, AraC-type CLD04_01425 IPR018062 HTH domain AraC-type, conserved site CLD04_01425 IPR020449 Transcription regulator HTH, AraC- type CLD04_01430 IPR008302 Uncharacterised conserved protein UCP016719 CLD04_01435 IPR017853 Glycoside hydrolase superfamily CLD04_01435 IPR001764 Glycoside hydrolase, family 3, N-terminal CLD04_01435 IPR019800 Glycoside hydrolase, family 3, active site CLD04_01435 IPR036962 Glycoside hydrolase, family 3, N-terminal domain superfamily CLD04_01435 IPR036881 Glycoside hydrolase family 3 C-terminal domain superfamily CLD04_01435 IPR002772 Glycoside hydrolase family 3 C-terminal domain CLD04_01440 IPR012338 Beta-lactamase/transpeptidase-like CLD04_01440 IPR001466 Beta-lactamase-related CLD04_01445 IPR013013 Phosphotransferase system, EIIC component, type 1 CLD04_01445 IPR036878 Glucose permease domain IIB CLD04_01445 IPR001996 Phosphotransferase system, IIB component, type 1 CLD04_01445 IPR003352 Phosphotransferase system, EIIC CLD04_01445 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site CLD04_01450 IPR035472 RpiR-like, SIS domain CLD04_01450 IPR009057 Homeobox-like domain superfamily CLD04_01450 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_01450 IPR001347 Sugar isomerase (SIS) CLD04_01450 IPR000281 Helix-turn-helix protein RpiR CLD04_01455 IPR005486 Glucokinase regulatory protein, conserved site CLD04_01455 IPR005488 N-acetylmuramic acid 6-phosphate etherase MurQ CLD04_01455 IPR001347 Sugar isomerase (SIS) CLD04_01455 IPR040190 N-acetylmuramic acid 6-phosphate etherase/glucokinase regulatory protein CLD04_01465 IPR007553 Domain of unknown function DUF523 CLD04_01495 IPR013325 RNA polymerase sigma factor, region 2 CLD04_01495 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site CLD04_01495 IPR007627 RNA polymerase sigma-70 region 2 CLD04_01495 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 CLD04_01495 IPR013324 RNA polymerase sigma factor, region 3/4-like CLD04_01495 IPR014284 RNA polymerase sigma-70 like domain CLD04_01495 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_01495 IPR039425 RNA polymerase sigma-70 like CLD04_01495 IPR014294 RNA polymerase sigma-W, bacillaceae CLD04_01500 IPR027383 Putative zinc-finger CLD04_01505 IPR034701 Diadenylate cyclase CdaA CLD04_01505 IPR014046 Diadenylate cyclase CLD04_01505 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily CLD04_01505 IPR003390 DNA integrity scanning protein, DisA, N-terminal CLD04_01510 IPR012505 YbbR-like CLD04_01515 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III CLD04_01515 IPR006352 Phosphoglucosamine mutase, bacterial type CLD04_01515 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III CLD04_01515 IPR005841 Alpha-D-phosphohexomutase superfamily CLD04_01515 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I CLD04_01515 IPR016066 Alpha-D-phosphohexomutase, conserved site CLD04_01515 IPR005843 Alpha-D-phosphohexomutase, C-terminal CLD04_01515 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II CLD04_01515 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily CLD04_01525 IPR035466 GlmS/AgaS, SIS domain 1 CLD04_01525 IPR017932 Glutamine amidotransferase type 2 domain CLD04_01525 IPR001347 Sugar isomerase (SIS) CLD04_01525 IPR029055 Nucleophile aminohydrolases, N-terminal CLD04_01525 IPR005855 Glucosamine-fructose-6-phosphate aminotransferase, isomerising CLD04_01525 IPR035490 GlmS/FrlB, SIS domain 2 CLD04_01535 IPR003265 HhH-GPD domain CLD04_01535 IPR012904 8-oxoguanine DNA glycosylase, N-terminal CLD04_01535 IPR000035 Alkylbase DNA glycosidase, conserved site CLD04_01535 IPR011257 DNA glycosylase CLD04_01545 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding CLD04_01545 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site CLD04_01545 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain CLD04_01545 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain CLD04_01545 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily CLD04_01545 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_01550 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit CLD04_01550 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal CLD04_01555 IPR018752 Uncharacterised protein family UPF0753 CLD04_01560 IPR036874 Carbonic anhydrase superfamily CLD04_01570 IPR018745 Domain of unknown function DUF2294 CLD04_01590 IPR000719 Protein kinase domain CLD04_01590 IPR017441 Protein kinase, ATP binding site CLD04_01590 IPR011009 Protein kinase-like domain superfamily CLD04_01600 IPR032617 Protein of unknown function DUF4885 CLD04_01605 IPR004841 Amino acid permease/ SLC12A domain CLD04_01605 IPR004840 Amino acid permease, conserved site CLD04_01610 IPR020255 Minor curli fiber component A CLD04_01615 IPR035314 Protein of unknown function DUF5370 CLD04_01620 IPR012338 Beta-lactamase/transpeptidase-like CLD04_01620 IPR002137 Beta-lactamase, class-D active site CLD04_01620 IPR001460 Penicillin-binding protein, transpeptidase CLD04_01625 IPR001128 Cytochrome P450 CLD04_01625 IPR002401 Cytochrome P450, E-class, group I CLD04_01625 IPR036396 Cytochrome P450 superfamily CLD04_01635 IPR002293 Amino acid/polyamine transporter I CLD04_01640 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily CLD04_01640 IPR030395 Glycerophosphodiester phosphodiesterase domain CLD04_01645 IPR000849 Sugar phosphate transporter CLD04_01645 IPR021159 Glycerate/sugar phosphate transporter, conserved site CLD04_01645 IPR011701 Major facilitator superfamily CLD04_01645 IPR036259 MFS transporter superfamily CLD04_01645 IPR020846 Major facilitator superfamily domain CLD04_01645 IPR005267 Glycerol-3-phosphate transporter CLD04_01655 IPR020258 Uncharacterised protein family YbeF CLD04_01660 IPR036390 Winged helix DNA-binding domain superfamily CLD04_01660 IPR000835 MarR-type HTH domain CLD04_01660 IPR016181 Acyl-CoA N-acyltransferase CLD04_01660 IPR000182 GNAT domain CLD04_01660 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_01665 IPR036259 MFS transporter superfamily CLD04_01665 IPR011701 Major facilitator superfamily CLD04_01665 IPR020846 Major facilitator superfamily domain CLD04_01675 IPR036366 PGBD superfamily CLD04_01675 IPR015020 Protein of unknown function DUF1906 CLD04_01675 IPR036365 PGBD-like superfamily CLD04_01675 IPR017853 Glycoside hydrolase superfamily CLD04_01675 IPR002477 Peptidoglycan binding-like CLD04_01680 IPR000620 EamA domain CLD04_01685 IPR018060 DNA binding HTH domain, AraC-type CLD04_01685 IPR037923 Transcription regulator HTH-like CLD04_01685 IPR009057 Homeobox-like domain superfamily CLD04_01685 IPR003313 AraC-type arabinose-binding/dimerisation domain CLD04_01685 IPR014710 RmlC-like jelly roll fold CLD04_01690 IPR005862 Formate-dependent phosphoribosylglycinamide formyltransferase CLD04_01690 IPR011761 ATP-grasp fold CLD04_01690 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type CLD04_01690 IPR013815 ATP-grasp fold, subdomain 1 CLD04_01690 IPR016185 Pre-ATP-grasp domain superfamily CLD04_01690 IPR011054 Rudiment single hybrid motif CLD04_01695 IPR001254 Serine proteases, trypsin domain CLD04_01695 IPR018114 Serine proteases, trypsin family, histidine active site CLD04_01695 IPR028301 Serine proteases, V8 family, histidine active site CLD04_01695 IPR000126 Serine proteases, V8 family, serine active site CLD04_01695 IPR008256 Peptidase S1B CLD04_01695 IPR009003 Peptidase S1, PA clan CLD04_01700 IPR013783 Immunoglobulin-like fold CLD04_01700 IPR019730 Protein of unknown function DUF2606 CLD04_01705 IPR000073 Alpha/beta hydrolase fold-1 CLD04_01705 IPR029058 Alpha/Beta hydrolase fold CLD04_01710 IPR000462 CDP-alcohol phosphatidyltransferase CLD04_01710 IPR004533 CDP-diacylglycerol--serine O-phosphatidyltransferase CLD04_01715 IPR032816 SNARE associated Golgi protein CLD04_01720 IPR033177 Phosphatidylserine decarboxylase CLD04_01720 IPR033178 Phosphatidylserine decarboxylase, prokaryotic type 1 CLD04_01720 IPR003817 Phosphatidylserine decarboxylase-related CLD04_01730 IPR007815 Erythromycin esterase CLD04_01740 IPR036458 Sodium:dicarboxylate symporter superfamily CLD04_01740 IPR018107 Sodium:dicarboxylate symporter, conserved site CLD04_01740 IPR033380 Glutamate-aspartate symport protein GltP/GltT CLD04_01740 IPR001991 Sodium:dicarboxylate symporter CLD04_01745 IPR011055 Duplicated hybrid motif CLD04_01745 IPR013013 Phosphotransferase system, EIIC component, type 1 CLD04_01745 IPR001996 Phosphotransferase system, IIB component, type 1 CLD04_01745 IPR011299 PTS system glucose-specific IIBC component CLD04_01745 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 CLD04_01745 IPR003352 Phosphotransferase system, EIIC CLD04_01745 IPR036878 Glucose permease domain IIB CLD04_01745 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site CLD04_01750 IPR004547 Glucosamine-6-phosphate isomerase CLD04_01750 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase CLD04_01750 IPR018321 Glucosamine-6-phosphate isomerase, conserved site CLD04_01750 IPR037171 NagB/RpiA transferase-like CLD04_01760 IPR012867 Domain of unknown function DUF1648 CLD04_01765 IPR001544 Aminotransferase class IV CLD04_01765 IPR036038 Aminotransferase-like, PLP-dependent enzymes CLD04_01765 IPR018300 Aminotransferase, class IV, conserved site CLD04_01765 IPR005786 Branched-chain amino acid aminotransferase II CLD04_01765 IPR033939 Branched-chain aminotransferase CLD04_01770 IPR004841 Amino acid permease/ SLC12A domain CLD04_01770 IPR004840 Amino acid permease, conserved site CLD04_01775 IPR036589 Homocysteine-binding domain superfamily CLD04_01775 IPR017226 Betaine-homocysteine S-methyltransferase, BHMT CLD04_01775 IPR003726 Homocysteine-binding domain CLD04_01785 IPR001463 Sodium:alanine symporter CLD04_01790 IPR012338 Beta-lactamase/transpeptidase-like CLD04_01790 IPR015868 Glutaminase CLD04_01795 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLD04_01795 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_01795 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_01795 IPR005467 Histidine kinase domain CLD04_01800 IPR011006 CheY-like superfamily CLD04_01800 IPR001789 Signal transduction response regulator, receiver domain CLD04_01800 IPR013972 YcbB domain CLD04_01805 IPR002220 DapA-like CLD04_01805 IPR017655 5-dehydro-4-deoxyglucarate dehydratase CLD04_01805 IPR013785 Aldolase-type TIM barrel CLD04_01810 IPR016163 Aldehyde dehydrogenase, C-terminal CLD04_01810 IPR015590 Aldehyde dehydrogenase domain CLD04_01810 IPR016161 Aldehyde/histidinol dehydrogenase CLD04_01810 IPR016160 Aldehyde dehydrogenase, cysteine active site CLD04_01810 IPR029510 Aldehyde dehydrogenase, glutamic acid active site CLD04_01810 IPR016162 Aldehyde dehydrogenase, N-terminal CLD04_01820 IPR029065 Enolase C-terminal domain-like CLD04_01820 IPR034593 Mandelate racemase-like CLD04_01820 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal CLD04_01820 IPR017653 Glucarate dehydratase CLD04_01820 IPR036849 Enolase-like, C-terminal domain superfamily CLD04_01820 IPR029017 Enolase-like, N-terminal CLD04_01820 IPR034598 D-Glucarate dehydratase-like CLD04_01825 IPR011711 GntR, C-terminal CLD04_01825 IPR036390 Winged helix DNA-binding domain superfamily CLD04_01825 IPR008920 Transcription regulator FadR/GntR, C-terminal CLD04_01825 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_01825 IPR000524 Transcription regulator HTH, GntR CLD04_01840 IPR031538 Tryptophan RNA-binding attenuator protein inhibitory protein CLD04_01840 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily CLD04_01845 IPR000620 EamA domain CLD04_01850 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_01850 IPR039420 Transcriptional regulatory protein WalR-like CLD04_01850 IPR001789 Signal transduction response regulator, receiver domain CLD04_01850 IPR011006 CheY-like superfamily CLD04_01850 IPR001867 OmpR/PhoB-type DNA-binding domain CLD04_01850 IPR016032 Signal transduction response regulator, C-terminal effector CLD04_01855 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_01855 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLD04_01855 IPR005467 Histidine kinase domain CLD04_01855 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLD04_01855 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_01855 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLD04_01860 IPR003593 AAA+ ATPase domain CLD04_01860 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_01860 IPR017871 ABC transporter, conserved site CLD04_01860 IPR003439 ABC transporter-like CLD04_01870 IPR019649 Protein of unknown function DUF2512 CLD04_01875 IPR042047 Cell wall hydrolase SleB, domain 1 CLD04_01875 IPR011105 Cell wall hydrolase, SleB CLD04_01885 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily CLD04_01885 IPR012340 Nucleic acid-binding, OB-fold CLD04_01885 IPR033714 Phenylalanly tRNA synthetase, tRNA-binding-domain CLD04_01885 IPR005147 tRNA synthetase, B5-domain CLD04_01885 IPR005121 Ferrodoxin-fold anticodon-binding domain CLD04_01885 IPR009061 Putative DNA-binding domain superfamily CLD04_01885 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit CLD04_01885 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 CLD04_01885 IPR002547 tRNA-binding domain CLD04_01885 IPR041616 Phenylalanyl tRNA synthetase beta chain, core domain CLD04_01885 IPR005146 B3/B4 tRNA-binding domain CLD04_01895 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CLD04_01895 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CLD04_01895 IPR022858 Metallothiol transferase FosB CLD04_01895 IPR037523 Vicinal oxygen chelate (VOC) domain CLD04_01910 IPR005676 Aspartate-semialdehyde dehydrogenase, peptidoglycan lacking CLD04_01910 IPR000534 Semialdehyde dehydrogenase, NAD-binding CLD04_01910 IPR012080 Aspartate-semialdehyde dehydrogenase CLD04_01910 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site CLD04_01910 IPR012280 Semialdehyde dehydrogenase, dimerisation domain CLD04_01910 IPR036291 NAD(P)-binding domain superfamily CLD04_01915 IPR002293 Amino acid/polyamine transporter I CLD04_01930 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLD04_01930 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body CLD04_01930 IPR023434 Argininosuccinate synthase, type 1 subfamily CLD04_01930 IPR018223 Argininosuccinate synthase, conserved site CLD04_01930 IPR001518 Argininosuccinate synthase CLD04_01935 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_01935 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_01935 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme CLD04_01935 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_01940 IPR001123 Amino acid exporter protein, LeuE-type CLD04_01945 IPR004839 Aminotransferase, class I/classII CLD04_01945 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_01945 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_01945 IPR000524 Transcription regulator HTH, GntR CLD04_01945 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_01945 IPR036390 Winged helix DNA-binding domain superfamily CLD04_01945 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_01960 IPR018946 Alkaline phosphatase D-related CLD04_01960 IPR008963 Purple acid phosphatase-like, N-terminal CLD04_01960 IPR038607 PhoD-like superfamily CLD04_01960 IPR032093 Phospholipase D, N-terminal CLD04_01965 IPR006312 Sec-independent protein translocase protein TatA/E CLD04_01965 IPR003369 Sec-independent protein translocase protein TatA/B/E CLD04_01970 IPR002033 Sec-independent periplasmic protein translocase TatC CLD04_01970 IPR019820 Sec-independent periplasmic protein translocase, conserved site CLD04_01975 IPR029762 Pyroglutamyl peptidase I, bacterial-type CLD04_01975 IPR016125 Peptidase C15, pyroglutamyl peptidase I-like CLD04_01975 IPR000816 Peptidase C15, pyroglutamyl peptidase I CLD04_01975 IPR036440 Peptidase C15, pyroglutamyl peptidase I-like superfamily CLD04_01975 IPR033694 Pyroglutamyl peptidase I, Cys active site CLD04_01975 IPR033693 Pyroglutamyl peptidase I, Glu active site CLD04_01980 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_01980 IPR000192 Aminotransferase class V domain CLD04_01980 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site CLD04_01980 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_01980 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_01985 IPR004638 Drug resistance transporter EmrB-like CLD04_01985 IPR036259 MFS transporter superfamily CLD04_01985 IPR020846 Major facilitator superfamily domain CLD04_01985 IPR011701 Major facilitator superfamily CLD04_01990 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CLD04_01990 IPR001647 DNA-binding HTH domain, TetR-type CLD04_01990 IPR009057 Homeobox-like domain superfamily CLD04_01995 IPR004550 L-asparaginase, type II CLD04_01995 IPR036152 Asparaginase/glutaminase-like superfamily CLD04_01995 IPR020827 Asparaginase/glutaminase, active site 1 CLD04_01995 IPR027475 Asparaginase/glutaminase, active site 2 CLD04_01995 IPR040919 Asparaginase/glutaminase, C-terminal CLD04_01995 IPR027473 L-asparaginase, C-terminal CLD04_01995 IPR027474 L-asparaginase, N-terminal CLD04_01995 IPR006034 Asparaginase/glutaminase-like CLD04_01995 IPR037152 L-asparaginase, N-terminal domain superfamily CLD04_02000 IPR002918 Lipase EstA/Esterase EstB CLD04_02000 IPR029058 Alpha/Beta hydrolase fold CLD04_02005 IPR010432 RDD CLD04_02010 IPR036915 Cyclin-like superfamily CLD04_02010 IPR004027 SEC-C motif CLD04_02010 IPR007889 DNA binding HTH domain, Psq-type CLD04_02020 IPR011006 CheY-like superfamily CLD04_02020 IPR007492 LytTR DNA-binding domain CLD04_02020 IPR001789 Signal transduction response regulator, receiver domain CLD04_02025 IPR003593 AAA+ ATPase domain CLD04_02025 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_02025 IPR017871 ABC transporter, conserved site CLD04_02025 IPR003439 ABC transporter-like CLD04_02030 IPR032688 ABC-2 family transporter protein CLD04_02035 IPR023210 NADP-dependent oxidoreductase domain CLD04_02035 IPR020471 Aldo/keto reductase CLD04_02035 IPR036812 NADP-dependent oxidoreductase domain superfamily CLD04_02040 IPR029050 Immunoprotective extracellular, immunoglobulin-like domain superfamily CLD04_02040 IPR031343 Domain of unknown function DUF5105 CLD04_02040 IPR029051 Domain of unknown function DUF4352 CLD04_02045 IPR032599 Protein of unknown function DUF4901 CLD04_02050 IPR032599 Protein of unknown function DUF4901 CLD04_02055 IPR039561 Peptidase M15C CLD04_02055 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily CLD04_02060 IPR040702 Response regulator aspartate phosphatase, N-terminal CLD04_02060 IPR019734 Tetratricopeptide repeat CLD04_02060 IPR011990 Tetratricopeptide-like helical domain superfamily CLD04_02060 IPR013026 Tetratricopeptide repeat-containing domain CLD04_02065 IPR002347 Short-chain dehydrogenase/reductase SDR CLD04_02065 IPR020904 Short-chain dehydrogenase/reductase, conserved site CLD04_02065 IPR036291 NAD(P)-binding domain superfamily CLD04_02070 IPR013780 Glycosyl hydrolase, all-beta CLD04_02070 IPR006047 Glycosyl hydrolase, family 13, catalytic domain CLD04_02070 IPR017853 Glycoside hydrolase superfamily CLD04_02075 IPR006128 Adhesion lipoprotein CLD04_02075 IPR006129 Adhesin B CLD04_02075 IPR006127 Periplasmic solute binding protein, ZnuA-like CLD04_02080 IPR017871 ABC transporter, conserved site CLD04_02080 IPR003593 AAA+ ATPase domain CLD04_02080 IPR003439 ABC transporter-like CLD04_02080 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_02085 IPR037294 ABC transporter, BtuC-like CLD04_02085 IPR001626 ABC transporter, TroCD-like CLD04_02090 IPR019949 Luciferase family oxidoreductase, group 1 CLD04_02090 IPR036661 Luciferase-like domain superfamily CLD04_02090 IPR011251 Luciferase-like domain CLD04_02095 IPR003325 TerD domain CLD04_02100 IPR003325 TerD domain CLD04_02105 IPR003325 TerD domain CLD04_02110 IPR022493 Integral membrane YkoY CLD04_02110 IPR005496 Integral membrane protein TerC CLD04_02115 IPR025647 Putative component of 'biosynthetic module' CLD04_02120 IPR008863 Toxic anion resistance CLD04_02125 IPR036259 MFS transporter superfamily CLD04_02125 IPR020846 Major facilitator superfamily domain CLD04_02125 IPR011701 Major facilitator superfamily CLD04_02125 IPR005829 Sugar transporter, conserved site CLD04_02130 IPR036259 MFS transporter superfamily CLD04_02130 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG CLD04_02130 IPR011701 Major facilitator superfamily CLD04_02130 IPR020846 Major facilitator superfamily domain CLD04_02135 IPR011991 ArsR-like helix-turn-helix domain CLD04_02135 IPR036390 Winged helix DNA-binding domain superfamily CLD04_02135 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_02135 IPR001845 HTH ArsR-type DNA-binding domain CLD04_02140 IPR005892 Glycine betaine transport ATP-binding subunit CLD04_02140 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_02140 IPR000644 CBS domain CLD04_02140 IPR003439 ABC transporter-like CLD04_02140 IPR003593 AAA+ ATPase domain CLD04_02140 IPR017871 ABC transporter, conserved site CLD04_02145 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_02145 IPR035906 MetI-like superfamily CLD04_02150 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain CLD04_02155 IPR017439 Amidohydrolase CLD04_02155 IPR037484 AmhX-like CLD04_02155 IPR002933 Peptidase M20 CLD04_02155 IPR011650 Peptidase M20, dimerisation domain CLD04_02155 IPR036264 Bacterial exopeptidase dimerisation domain CLD04_02160 IPR018385 C4-dicarboxylate anaerobic carrier-like CLD04_02175 IPR018177 L-lactate dehydrogenase, active site CLD04_02175 IPR001236 Lactate/malate dehydrogenase, N-terminal CLD04_02175 IPR011304 L-lactate dehydrogenase CLD04_02175 IPR001557 L-lactate/malate dehydrogenase CLD04_02175 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal CLD04_02175 IPR022383 Lactate/malate dehydrogenase, C-terminal CLD04_02175 IPR036291 NAD(P)-binding domain superfamily CLD04_02180 IPR003804 L-lactate permease CLD04_02190 IPR014988 Uncharacterised protein family, YqcI/YcgG CLD04_02205 IPR022926 NH(3)-dependent NAD(+) synthetase CLD04_02205 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLD04_02205 IPR003694 NAD(+) synthetase CLD04_02205 IPR022310 NAD/GMP synthase CLD04_02210 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_02215 IPR000623 Shikimate kinase/Threonine synthase-like 1 CLD04_02215 IPR023000 Shikimate kinase, conserved site CLD04_02215 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_02215 IPR031322 Shikimate kinase/gluconokinase CLD04_02220 IPR013216 Methyltransferase type 11 CLD04_02220 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_02225 IPR036390 Winged helix DNA-binding domain superfamily CLD04_02225 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_02225 IPR005119 LysR, substrate-binding CLD04_02225 IPR000847 Transcription regulator HTH, LysR CLD04_02230 IPR008391 Acetyl xylan esterase CLD04_02230 IPR039069 Carbohydrate esterase 7 family CLD04_02230 IPR029058 Alpha/Beta hydrolase fold CLD04_02235 IPR018775 RNA repair pathway DNA polymerase beta CLD04_02240 IPR029041 FAD-linked oxidoreductase-like CLD04_02240 IPR002872 Proline dehydrogenase domain CLD04_02240 IPR008219 Proline dehydrogenase, bacteria and archaea CLD04_02240 IPR015659 Proline oxidase family CLD04_02245 IPR016162 Aldehyde dehydrogenase, N-terminal CLD04_02245 IPR016161 Aldehyde/histidinol dehydrogenase CLD04_02245 IPR015590 Aldehyde dehydrogenase domain CLD04_02245 IPR005932 1-pyrroline-5-carboxylate dehydrogenase CLD04_02245 IPR016163 Aldehyde dehydrogenase, C-terminal CLD04_02245 IPR016160 Aldehyde dehydrogenase, cysteine active site CLD04_02245 IPR029510 Aldehyde dehydrogenase, glutamic acid active site CLD04_02250 IPR001734 Sodium/solute symporter CLD04_02250 IPR011851 Sodium/proline symporter CLD04_02250 IPR018212 Sodium/solute symporter, conserved site CLD04_02250 IPR038377 Sodium/glucose symporter superfamily CLD04_02255 IPR025736 PucR C-terminal helix-turn-helix domain CLD04_02255 IPR042070 PucR C-terminal helix-turn-helix domain superfamily CLD04_02255 IPR041522 CdaR, GGDEF-like domain CLD04_02260 IPR015402 Protein of unknown function DUF1980 CLD04_02265 IPR005524 Predicted permease DUF318 CLD04_02270 IPR029058 Alpha/Beta hydrolase fold CLD04_02270 IPR000073 Alpha/beta hydrolase fold-1 CLD04_02275 IPR022890 Ferredoxin--NADP reductase, type 2 CLD04_02275 IPR023753 FAD/NAD(P)-binding domain CLD04_02275 IPR036188 FAD/NAD(P)-binding domain superfamily CLD04_02280 IPR035996 Tetrapyrrole methylase superfamily CLD04_02280 IPR000878 Tetrapyrrole methylase CLD04_02280 IPR014776 Tetrapyrrole methylase, subdomain 2 CLD04_02280 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site CLD04_02280 IPR014777 Tetrapyrrole methylase, subdomain 1 CLD04_02280 IPR006366 Uroporphyrin-III C-methyltransferase CLD04_02280 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily CLD04_02285 IPR017941 Rieske [2Fe-2S] iron-sulphur domain CLD04_02285 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily CLD04_02285 IPR012748 Rieske-like [2Fe-2S] domain, NirD-type CLD04_02290 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily CLD04_02290 IPR041575 NADH-rubredoxin oxidoreductase, C-terminal CLD04_02290 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site CLD04_02290 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain CLD04_02290 IPR017121 Nitrite reductase [NAD(P)H], large subunit CLD04_02290 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB CLD04_02290 IPR023753 FAD/NAD(P)-binding domain CLD04_02290 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily CLD04_02290 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain CLD04_02290 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily CLD04_02290 IPR036188 FAD/NAD(P)-binding domain superfamily CLD04_02290 IPR007419 BFD-like [2Fe-2S]-binding domain CLD04_02295 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site CLD04_02295 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site CLD04_02295 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain CLD04_02295 IPR006656 Molybdopterin oxidoreductase CLD04_02295 IPR006657 Molybdopterin dinucleotide-binding domain CLD04_02295 IPR009010 Aspartate decarboxylase-like domain superfamily CLD04_02300 IPR023753 FAD/NAD(P)-binding domain CLD04_02300 IPR017121 Nitrite reductase [NAD(P)H], large subunit CLD04_02300 IPR012744 Nitrite reductase [NAD(P)H] large subunit, NirB CLD04_02300 IPR036188 FAD/NAD(P)-binding domain superfamily CLD04_02300 IPR041854 BFD-like [2Fe-2S]-binding domain superfamily CLD04_02300 IPR041575 NADH-rubredoxin oxidoreductase, C-terminal CLD04_02300 IPR007419 BFD-like [2Fe-2S]-binding domain CLD04_02300 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily CLD04_02300 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain CLD04_02300 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily CLD04_02305 IPR004737 Nitrate transporter CLD04_02305 IPR020846 Major facilitator superfamily domain CLD04_02305 IPR036259 MFS transporter superfamily CLD04_02305 IPR011701 Major facilitator superfamily CLD04_02310 IPR022838 GTP cyclohydrolase FolE2 CLD04_02310 IPR003801 GTP cyclohydrolase FolE2/MptA CLD04_02315 IPR005490 L,D-transpeptidase catalytic domain CLD04_02315 IPR038063 L,D-transpeptidase catalytic domain-like CLD04_02330 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain CLD04_02330 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_02330 IPR035906 MetI-like superfamily CLD04_02335 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CLD04_02335 IPR018313 Solute-binding protein family 3, conserved site CLD04_02340 IPR010432 RDD CLD04_02345 IPR024485 Protein of unknown function DUF2680 CLD04_02350 IPR018120 Glycoside hydrolase family 1, active site CLD04_02350 IPR001360 Glycoside hydrolase family 1 CLD04_02350 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site CLD04_02350 IPR017853 Glycoside hydrolase superfamily CLD04_02355 IPR038691 DNA-entry nuclease inhibitor, ComJ superfamily CLD04_02355 IPR020354 Competence, DNA-entry nuclease inhibitor, ComJ CLD04_02360 IPR029476 Deoxyribonuclease NucA/NucB CLD04_02365 IPR004090 Chemotaxis methyl-accepting receptor CLD04_02365 IPR003660 HAMP domain CLD04_02365 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLD04_02365 IPR033463 Single cache domain 3 CLD04_02365 IPR029151 Periplasmic sensor-like domain superfamily CLD04_02370 IPR001347 Sugar isomerase (SIS) CLD04_02370 IPR017552 3-hexulose-6-phosphate isomerase CLD04_02375 IPR011060 Ribulose-phosphate binding barrel CLD04_02375 IPR001754 Orotidine 5'-phosphate decarboxylase domain CLD04_02375 IPR041710 HPS/KGPDC domain CLD04_02375 IPR013785 Aldolase-type TIM barrel CLD04_02375 IPR017553 3-hexulose-6-phosphate synthase CLD04_02380 IPR036390 Winged helix DNA-binding domain superfamily CLD04_02380 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_02380 IPR002577 Helix-turn-helix, HxlR type CLD04_02385 IPR020806 Polyketide synthase, phosphopantetheine-binding domain CLD04_02385 IPR006162 Phosphopantetheine attachment site CLD04_02385 IPR009081 Phosphopantetheine binding ACP domain CLD04_02385 IPR010071 Amino acid adenylation domain CLD04_02385 IPR010060 Non-ribosomal peptide synthase CLD04_02385 IPR029058 Alpha/Beta hydrolase fold CLD04_02385 IPR036736 ACP-like superfamily CLD04_02385 IPR025110 AMP-binding enzyme, C-terminal domain CLD04_02385 IPR020845 AMP-binding, conserved site CLD04_02385 IPR001242 Condensation domain CLD04_02385 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CLD04_02385 IPR000873 AMP-dependent synthetase/ligase CLD04_02385 IPR042099 AMP-dependent synthetase-like superfamily CLD04_02390 IPR009081 Phosphopantetheine binding ACP domain CLD04_02390 IPR006162 Phosphopantetheine attachment site CLD04_02390 IPR010060 Non-ribosomal peptide synthase CLD04_02390 IPR010071 Amino acid adenylation domain CLD04_02390 IPR020806 Polyketide synthase, phosphopantetheine-binding domain CLD04_02390 IPR025110 AMP-binding enzyme, C-terminal domain CLD04_02390 IPR020845 AMP-binding, conserved site CLD04_02390 IPR036736 ACP-like superfamily CLD04_02390 IPR042099 AMP-dependent synthetase-like superfamily CLD04_02390 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CLD04_02390 IPR001242 Condensation domain CLD04_02390 IPR000873 AMP-dependent synthetase/ligase CLD04_02395 IPR036736 ACP-like superfamily CLD04_02395 IPR025110 AMP-binding enzyme, C-terminal domain CLD04_02395 IPR020845 AMP-binding, conserved site CLD04_02395 IPR000873 AMP-dependent synthetase/ligase CLD04_02395 IPR042099 AMP-dependent synthetase-like superfamily CLD04_02395 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CLD04_02395 IPR020806 Polyketide synthase, phosphopantetheine-binding domain CLD04_02395 IPR001242 Condensation domain CLD04_02395 IPR010060 Non-ribosomal peptide synthase CLD04_02395 IPR009081 Phosphopantetheine binding ACP domain CLD04_02395 IPR010071 Amino acid adenylation domain CLD04_02395 IPR006162 Phosphopantetheine attachment site CLD04_02405 IPR001242 Condensation domain CLD04_02405 IPR025110 AMP-binding enzyme, C-terminal domain CLD04_02405 IPR036736 ACP-like superfamily CLD04_02405 IPR020845 AMP-binding, conserved site CLD04_02405 IPR000873 AMP-dependent synthetase/ligase CLD04_02405 IPR010071 Amino acid adenylation domain CLD04_02405 IPR042099 AMP-dependent synthetase-like superfamily CLD04_02405 IPR010060 Non-ribosomal peptide synthase CLD04_02405 IPR020806 Polyketide synthase, phosphopantetheine-binding domain CLD04_02405 IPR009081 Phosphopantetheine binding ACP domain CLD04_02405 IPR006162 Phosphopantetheine attachment site CLD04_02405 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CLD04_02410 IPR036736 ACP-like superfamily CLD04_02410 IPR020806 Polyketide synthase, phosphopantetheine-binding domain CLD04_02410 IPR010071 Amino acid adenylation domain CLD04_02410 IPR029058 Alpha/Beta hydrolase fold CLD04_02410 IPR025110 AMP-binding enzyme, C-terminal domain CLD04_02410 IPR009081 Phosphopantetheine binding ACP domain CLD04_02410 IPR000873 AMP-dependent synthetase/ligase CLD04_02410 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CLD04_02410 IPR006162 Phosphopantetheine attachment site CLD04_02410 IPR001031 Thioesterase CLD04_02410 IPR001242 Condensation domain CLD04_02410 IPR020845 AMP-binding, conserved site CLD04_02415 IPR012223 Thioesterase type II, NRPS/PKS/S-FAS CLD04_02415 IPR029058 Alpha/Beta hydrolase fold CLD04_02415 IPR001031 Thioesterase CLD04_02420 IPR011701 Major facilitator superfamily CLD04_02420 IPR036259 MFS transporter superfamily CLD04_02420 IPR020846 Major facilitator superfamily domain CLD04_02425 IPR025588 YcxB-like protein CLD04_02430 IPR000620 EamA domain CLD04_02435 IPR004839 Aminotransferase, class I/classII CLD04_02435 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_02435 IPR036390 Winged helix DNA-binding domain superfamily CLD04_02435 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_02435 IPR000524 Transcription regulator HTH, GntR CLD04_02435 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_02440 IPR037143 4'-phosphopantetheinyl transferase domain superfamily CLD04_02440 IPR004568 Phosphopantetheine-protein transferase domain CLD04_02440 IPR008278 4'-phosphopantetheinyl transferase domain CLD04_02445 IPR038750 Uncharacterized protein YczE/YyaS-like CLD04_02450 IPR017871 ABC transporter, conserved site CLD04_02450 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_02450 IPR003439 ABC transporter-like CLD04_02450 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type CLD04_02450 IPR003593 AAA+ ATPase domain CLD04_02455 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain CLD04_02455 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_02455 IPR035906 MetI-like superfamily CLD04_02460 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CLD04_02460 IPR018313 Solute-binding protein family 3, conserved site CLD04_02465 IPR036390 Winged helix DNA-binding domain superfamily CLD04_02465 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_02465 IPR005119 LysR, substrate-binding CLD04_02465 IPR000847 Transcription regulator HTH, LysR CLD04_02470 IPR003382 Flavoprotein CLD04_02470 IPR032901 Probable UbiX-like flavin prenyltransferase CLD04_02470 IPR004507 Flavin prenyltransferase UbiX-like CLD04_02470 IPR036551 Flavin prenyltransferase-like CLD04_02475 IPR032902 Phenolic acid decarboxylase subunit C CLD04_02475 IPR002830 UbiD decarboxylyase family CLD04_02490 IPR000073 Alpha/beta hydrolase fold-1 CLD04_02490 IPR029058 Alpha/Beta hydrolase fold CLD04_02495 IPR000109 Proton-dependent oligopeptide transporter family CLD04_02495 IPR018456 PTR2 family proton/oligopeptide symporter, conserved site CLD04_02495 IPR020846 Major facilitator superfamily domain CLD04_02495 IPR005279 Dipeptide/tripeptide permease CLD04_02495 IPR036259 MFS transporter superfamily CLD04_02500 IPR006633 Carbohydrate-binding/sugar hydrolysis domain CLD04_02500 IPR006626 Parallel beta-helix repeat CLD04_02500 IPR024535 Pectate lyase superfamily protein CLD04_02500 IPR012334 Pectin lyase fold CLD04_02500 IPR011050 Pectin lyase fold/virulence factor CLD04_02500 IPR039448 Right handed beta helix domain CLD04_02510 IPR004995 Bacillus/Clostridium Ger spore germination protein CLD04_02515 IPR038501 Spore germination GerAC superfamily CLD04_02515 IPR008844 Spore germination GerAC CLD04_02520 IPR004761 Spore germination GerAB CLD04_02525 IPR003439 ABC transporter-like CLD04_02525 IPR003593 AAA+ ATPase domain CLD04_02525 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_02530 IPR003838 ABC transporter permease protein domain CLD04_02530 IPR025857 MacB-like periplasmic core domain CLD04_02535 IPR039420 Transcriptional regulatory protein WalR-like CLD04_02535 IPR001867 OmpR/PhoB-type DNA-binding domain CLD04_02535 IPR011006 CheY-like superfamily CLD04_02535 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_02535 IPR016032 Signal transduction response regulator, C-terminal effector CLD04_02535 IPR001789 Signal transduction response regulator, receiver domain CLD04_02540 IPR003660 HAMP domain CLD04_02540 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_02540 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLD04_02540 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLD04_02540 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLD04_02540 IPR005467 Histidine kinase domain CLD04_02540 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_02545 IPR040702 Response regulator aspartate phosphatase, N-terminal CLD04_02545 IPR013026 Tetratricopeptide repeat-containing domain CLD04_02545 IPR011990 Tetratricopeptide-like helical domain superfamily CLD04_02545 IPR019734 Tetratricopeptide repeat CLD04_02550 IPR025899 Phosphatase RapC/F inhibitor, PhrC/F CLD04_02555 IPR010070 Sporulation protein YjcZ-like CLD04_02560 IPR010070 Sporulation protein YjcZ-like CLD04_02565 IPR002912 ACT domain CLD04_02565 IPR036393 Acetylglutamate kinase-like superfamily CLD04_02565 IPR035804 Aspartokinase 3, N-terminal CLD04_02565 IPR027795 CASTOR, ACT domain CLD04_02565 IPR018042 Aspartate kinase, conserved site CLD04_02565 IPR001048 Aspartate/glutamate/uridylate kinase CLD04_02565 IPR005260 Aspartate kinase, monofunctional class CLD04_02565 IPR001341 Aspartate kinase CLD04_02570 IPR037294 ABC transporter, BtuC-like CLD04_02570 IPR000522 ABC transporter, permease protein, BtuC-like CLD04_02575 IPR037294 ABC transporter, BtuC-like CLD04_02575 IPR000522 ABC transporter, permease protein, BtuC-like CLD04_02580 IPR003439 ABC transporter-like CLD04_02580 IPR017871 ABC transporter, conserved site CLD04_02580 IPR003593 AAA+ ATPase domain CLD04_02580 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_02585 IPR002491 ABC transporter periplasmic binding domain CLD04_02585 IPR033870 FatB domain CLD04_02590 IPR004638 Drug resistance transporter EmrB-like CLD04_02590 IPR011701 Major facilitator superfamily CLD04_02590 IPR036259 MFS transporter superfamily CLD04_02590 IPR020846 Major facilitator superfamily domain CLD04_02595 IPR001647 DNA-binding HTH domain, TetR-type CLD04_02595 IPR009057 Homeobox-like domain superfamily CLD04_02600 IPR000415 Nitroreductase-like CLD04_02600 IPR029479 Nitroreductase CLD04_02600 IPR016446 Flavin oxidoreductase Frp family CLD04_02605 IPR007138 Antibiotic biosynthesis monooxygenase domain CLD04_02605 IPR011008 Dimeric alpha-beta barrel CLD04_02610 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_02610 IPR036390 Winged helix DNA-binding domain superfamily CLD04_02610 IPR011991 ArsR-like helix-turn-helix domain CLD04_02610 IPR001845 HTH ArsR-type DNA-binding domain CLD04_02615 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_02615 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_02615 IPR036390 Winged helix DNA-binding domain superfamily CLD04_02615 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_02615 IPR000524 Transcription regulator HTH, GntR CLD04_02615 IPR004839 Aminotransferase, class I/classII CLD04_02620 IPR004632 4-aminobutyrate aminotransferase, bacterial CLD04_02620 IPR005814 Aminotransferase class-III CLD04_02620 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_02620 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_02620 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_02625 IPR016160 Aldehyde dehydrogenase, cysteine active site CLD04_02625 IPR015590 Aldehyde dehydrogenase domain CLD04_02625 IPR016162 Aldehyde dehydrogenase, N-terminal CLD04_02625 IPR010102 Succinate semialdehyde dehydrogenase CLD04_02625 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent CLD04_02625 IPR016161 Aldehyde/histidinol dehydrogenase CLD04_02625 IPR016163 Aldehyde dehydrogenase, C-terminal CLD04_02630 IPR010651 Sugar transport protein CLD04_02635 IPR036291 NAD(P)-binding domain superfamily CLD04_02635 IPR002347 Short-chain dehydrogenase/reductase SDR CLD04_02635 IPR020904 Short-chain dehydrogenase/reductase, conserved site CLD04_02640 IPR038507 YcnI-like superfamily CLD04_02640 IPR012533 YcnI-like CLD04_02645 IPR032694 Copper transport protein C/D CLD04_02645 IPR007348 CopC domain CLD04_02645 IPR032693 YtkA-like domain CLD04_02645 IPR008457 Copper resistance protein D CLD04_02645 IPR014756 Immunoglobulin E-set CLD04_02650 IPR036390 Winged helix DNA-binding domain superfamily CLD04_02650 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_02650 IPR008719 Nitrous oxide reductase accessory protein NosL CLD04_02650 IPR001034 DeoR-type HTH domain CLD04_02660 IPR004718 Phosphotransferase system, mannitol-specific enzyme IIC CLD04_02660 IPR013014 Phosphotransferase system, EIIC component, type 2 CLD04_02660 IPR003352 Phosphotransferase system, EIIC CLD04_02660 IPR029503 Phosphotransferase system EIIB component, mannitol-specific CLD04_02660 IPR003501 Phosphotransferase system, EIIB component, type 2/3 CLD04_02660 IPR013011 Phosphotransferase system, EIIB component, type 2 CLD04_02660 IPR036095 PTS system IIB component-like superfamily CLD04_02665 IPR016152 Phosphotransferase/anion transporter CLD04_02665 IPR002178 PTS EIIA type-2 domain CLD04_02670 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CLD04_02670 IPR013328 6-phosphogluconate dehydrogenase, domain 2 CLD04_02670 IPR023028 Mannitol-1-phosphate 5-dehydrogenase CLD04_02670 IPR036291 NAD(P)-binding domain superfamily CLD04_02670 IPR013131 Mannitol dehydrogenase, N-terminal CLD04_02670 IPR000669 Mannitol dehydrogenase CLD04_02670 IPR013118 Mannitol dehydrogenase, C-terminal CLD04_02670 IPR023027 Mannitol dehydrogenase, conserved site CLD04_02675 IPR011829 Tartrate dehydrogenase CLD04_02675 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site CLD04_02675 IPR024084 Isopropylmalate dehydrogenase-like domain CLD04_02680 IPR019756 Peptidase S26A, signal peptidase I, serine active site CLD04_02680 IPR036286 LexA/Signal peptidase-like superfamily CLD04_02680 IPR000223 Peptidase S26A, signal peptidase I CLD04_02680 IPR019758 Peptidase S26A, signal peptidase I, conserved site CLD04_02680 IPR019757 Peptidase S26A, signal peptidase I, lysine active site CLD04_02680 IPR019533 Peptidase S26 CLD04_02685 IPR002925 Dienelactone hydrolase CLD04_02685 IPR029058 Alpha/Beta hydrolase fold CLD04_02690 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ CLD04_02690 IPR029069 HotDog domain superfamily CLD04_02700 IPR036412 HAD-like superfamily CLD04_02700 IPR006379 HAD-superfamily hydrolase, subfamily IIB CLD04_02700 IPR023214 HAD superfamily CLD04_02705 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel CLD04_02705 IPR005501 LamB/YcsF/PxpA-like CLD04_02710 IPR001046 NRAMP family CLD04_02715 IPR016938 Uncharacterised protein family UPF0317 CLD04_02715 IPR038021 Putative hydro-lyase CLD04_02715 IPR009906 D-glutamate cyclase CLD04_02720 IPR010016 KipI family CLD04_02720 IPR029000 Cyclophilin-like domain superfamily CLD04_02720 IPR003833 Carboxyltransferase domain, subdomain C and D CLD04_02725 IPR029000 Cyclophilin-like domain superfamily CLD04_02725 IPR003778 Carboxyltransferase domain, subdomain A and B CLD04_02730 IPR014757 Transcription regulator IclR, C-terminal CLD04_02730 IPR029016 GAF-like domain superfamily CLD04_02730 IPR005471 Transcription regulator IclR, N-terminal CLD04_02730 IPR036390 Winged helix DNA-binding domain superfamily CLD04_02730 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_02735 IPR013830 SGNH hydrolase-type esterase domain CLD04_02735 IPR036514 SGNH hydrolase superfamily CLD04_02740 IPR025018 Protein of unknown function DUF3953 CLD04_02745 IPR011008 Dimeric alpha-beta barrel CLD04_02745 IPR007138 Antibiotic biosynthesis monooxygenase domain CLD04_02750 IPR036138 Penicillin-binding protein, dimerisation domain superfamily CLD04_02750 IPR005311 Penicillin-binding protein, dimerisation domain CLD04_02750 IPR001460 Penicillin-binding protein, transpeptidase CLD04_02750 IPR007887 NTF2-like N-terminal transpeptidase CLD04_02750 IPR012338 Beta-lactamase/transpeptidase-like CLD04_02750 IPR032710 NTF2-like domain superfamily CLD04_02755 IPR036812 NADP-dependent oxidoreductase domain superfamily CLD04_02755 IPR020471 Aldo/keto reductase CLD04_02755 IPR023210 NADP-dependent oxidoreductase domain CLD04_02760 IPR003501 Phosphotransferase system, EIIB component, type 2/3 CLD04_02760 IPR007737 Mga helix-turn-helix domain CLD04_02760 IPR036634 PRD domain superfamily CLD04_02760 IPR013196 Helix-turn-helix, type 11 CLD04_02760 IPR013011 Phosphotransferase system, EIIB component, type 2 CLD04_02760 IPR036095 PTS system IIB component-like superfamily CLD04_02760 IPR016152 Phosphotransferase/anion transporter CLD04_02760 IPR002178 PTS EIIA type-2 domain CLD04_02760 IPR011608 PRD domain CLD04_02760 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_02760 IPR036390 Winged helix DNA-binding domain superfamily CLD04_02765 IPR000873 AMP-dependent synthetase/ligase CLD04_02765 IPR025110 AMP-binding enzyme, C-terminal domain CLD04_02765 IPR042099 AMP-dependent synthetase-like superfamily CLD04_02765 IPR020845 AMP-binding, conserved site CLD04_02770 IPR026669 Arsenite methyltransferase-like CLD04_02770 IPR041698 Methyltransferase domain 25 CLD04_02770 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_02775 IPR036291 NAD(P)-binding domain superfamily CLD04_02775 IPR020904 Short-chain dehydrogenase/reductase, conserved site CLD04_02775 IPR002347 Short-chain dehydrogenase/reductase SDR CLD04_02780 IPR011051 RmlC-like cupin domain superfamily CLD04_02780 IPR014710 RmlC-like jelly roll fold CLD04_02785 IPR000182 GNAT domain CLD04_02785 IPR016181 Acyl-CoA N-acyltransferase CLD04_02790 IPR038725 General stress protein, FMN-binding split barrel domain CLD04_02790 IPR012349 FMN-binding split barrel CLD04_02795 IPR021260 Lipid II flippase Amj CLD04_02800 IPR023845 Domain of unknown function DUF3817, transmembrane CLD04_02805 IPR000485 AsnC-type HTH domain CLD04_02805 IPR019888 Transcription regulator AsnC-type CLD04_02805 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_02805 IPR011008 Dimeric alpha-beta barrel CLD04_02805 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CLD04_02805 IPR036390 Winged helix DNA-binding domain superfamily CLD04_02810 IPR023405 DNA topoisomerase, type IA, core domain CLD04_02810 IPR023406 DNA topoisomerase, type IA, active site CLD04_02810 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 CLD04_02810 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 CLD04_02810 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 CLD04_02810 IPR013497 DNA topoisomerase, type IA, central CLD04_02810 IPR003601 DNA topoisomerase, type IA, domain 2 CLD04_02810 IPR005738 DNA topoisomerase III CLD04_02810 IPR006171 TOPRIM domain CLD04_02810 IPR034144 DNA topoisomerase 3-like, TOPRIM domain CLD04_02810 IPR003602 DNA topoisomerase, type IA, DNA-binding domain CLD04_02810 IPR000380 DNA topoisomerase, type IA CLD04_02815 IPR008928 Six-hairpin glycosidase superfamily CLD04_02815 IPR012341 Six-hairpin glycosidase-like superfamily CLD04_02825 IPR018763 Protein of unknown function DUF2334 CLD04_02845 IPR001046 NRAMP family CLD04_02850 IPR007341 Transglycosylase-associated protein CLD04_02855 IPR018691 Protein of unknown function DUF2188 CLD04_02860 IPR024787 EcsC protein CLD04_02865 IPR019626 Stress-induced protein, KGG, repeat CLD04_02865 IPR038956 Late embryogenesis abundant protein, LEA_5 subgroup CLD04_02870 IPR011051 RmlC-like cupin domain superfamily CLD04_02870 IPR013096 Cupin 2, conserved barrel CLD04_02870 IPR014710 RmlC-like jelly roll fold CLD04_02870 IPR019780 Germin, manganese binding site CLD04_02875 IPR032555 Domain of unknown function DUF4937 CLD04_02875 IPR011008 Dimeric alpha-beta barrel CLD04_02880 IPR039377 Manganese catalase, ferritin-like di-iron-binding domain CLD04_02880 IPR009078 Ferritin-like superfamily CLD04_02880 IPR012347 Ferritin-like CLD04_02880 IPR007760 Manganese catalase CLD04_02880 IPR027407 Manganese catalase, C-terminal CLD04_02885 IPR004682 TRAP transporter solute receptor, DctP family CLD04_02885 IPR018389 TRAP transporter solute receptor DctP/TeaA CLD04_02885 IPR038404 TRAP transporter solute receptor DctP superfamily CLD04_02890 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_02890 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB CLD04_02890 IPR039506 SpoOB, alpha-helical domain CLD04_02890 IPR035965 PAS domain superfamily CLD04_02890 IPR005467 Histidine kinase domain CLD04_02890 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_02890 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLD04_02890 IPR033463 Single cache domain 3 CLD04_02890 IPR000014 PAS domain CLD04_02890 IPR029151 Periplasmic sensor-like domain superfamily CLD04_02895 IPR011006 CheY-like superfamily CLD04_02895 IPR024187 Signal transduction response regulator, citrate/malate metabolism CLD04_02895 IPR001789 Signal transduction response regulator, receiver domain CLD04_02895 IPR013196 Helix-turn-helix, type 11 CLD04_02895 IPR036390 Winged helix DNA-binding domain superfamily CLD04_02895 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_02900 IPR023954 C4-dicarboxylate transport protein CLD04_02900 IPR036458 Sodium:dicarboxylate symporter superfamily CLD04_02900 IPR001991 Sodium:dicarboxylate symporter CLD04_02900 IPR018107 Sodium:dicarboxylate symporter, conserved site CLD04_02905 IPR002549 Transmembrane protein TqsA-like CLD04_02910 IPR003593 AAA+ ATPase domain CLD04_02910 IPR003439 ABC transporter-like CLD04_02910 IPR017871 ABC transporter, conserved site CLD04_02910 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_02925 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily CLD04_02925 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily CLD04_02925 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal CLD04_02925 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal CLD04_02925 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain CLD04_02925 IPR013107 Acyl-CoA dehydrogenase, C-terminal domain CLD04_02930 IPR025004 Transcriptional regulatory protein SenN/SenS CLD04_02940 IPR002524 Cation efflux protein CLD04_02940 IPR027470 Cation efflux protein, cytoplasmic domain CLD04_02940 IPR036837 Cation efflux protein, cytoplasmic domain superfamily CLD04_02940 IPR027469 Cation efflux transmembrane domain superfamily CLD04_02945 IPR036249 Thioredoxin-like superfamily CLD04_02945 IPR005746 Thioredoxin CLD04_02945 IPR013766 Thioredoxin domain CLD04_02950 IPR005905 D-alanine--D-alanine ligase CLD04_02950 IPR011095 D-alanine--D-alanine ligase, C-terminal CLD04_02950 IPR000291 D-alanine--D-alanine ligase/VANA/B/C, conserved site CLD04_02950 IPR013815 ATP-grasp fold, subdomain 1 CLD04_02950 IPR011761 ATP-grasp fold CLD04_02950 IPR011127 D-alanine--D-alanine ligase, N-terminal domain CLD04_02950 IPR016185 Pre-ATP-grasp domain superfamily CLD04_02955 IPR036565 Mur-like, catalytic domain superfamily CLD04_02955 IPR035911 MurE/MurF, N-terminal CLD04_02955 IPR005863 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D-alanine ligase CLD04_02955 IPR004101 Mur ligase, C-terminal CLD04_02955 IPR036615 Mur ligase, C-terminal domain superfamily CLD04_02955 IPR013221 Mur ligase, central CLD04_02955 IPR000713 Mur ligase, N-terminal catalytic domain CLD04_02965 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_02965 IPR014014 RNA helicase, DEAD-box type, Q motif CLD04_02965 IPR001650 Helicase, C-terminal CLD04_02965 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site CLD04_02965 IPR030880 DEAD-box ATP-dependent RNA helicase CshA CLD04_02965 IPR011545 DEAD/DEAH box helicase domain CLD04_02965 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLD04_02970 IPR005182 Domain of unknown function DUF304 CLD04_02975 IPR014529 Uncharacterised conserved protein UCP026631 CLD04_02975 IPR005182 Domain of unknown function DUF304 CLD04_02980 IPR022764 Peptidase S54, rhomboid domain CLD04_02980 IPR035952 Rhomboid-like superfamily CLD04_02985 IPR008278 4'-phosphopantetheinyl transferase domain CLD04_02985 IPR037143 4'-phosphopantetheinyl transferase domain superfamily CLD04_02985 IPR004568 Phosphopantetheine-protein transferase domain CLD04_02985 IPR002582 Holo-[acyl carrier protein] synthase CLD04_02990 IPR029046 Lipoprotein localisation LolA/LolB/LppX CLD04_02995 IPR000821 Alanine racemase CLD04_02995 IPR001608 Alanine racemase, N-terminal CLD04_02995 IPR029066 PLP-binding barrel CLD04_02995 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site CLD04_02995 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal CLD04_02995 IPR011079 Alanine racemase, C-terminal CLD04_03000 IPR013321 Arc-type ribbon-helix-helix CLD04_03000 IPR010985 Ribbon-helix-helix CLD04_03000 IPR002145 Ribbon-helix-helix protein, CopG CLD04_03005 IPR003477 mRNA interferase PemK-like CLD04_03005 IPR011067 Plasmid maintenance toxin/Cell growth inhibitor CLD04_03010 IPR012292 Globin/Protoglobin CLD04_03010 IPR014792 RsbS co-antagonist protein RsbRA N-terminal domain CLD04_03010 IPR002645 STAS domain CLD04_03010 IPR036513 STAS domain superfamily CLD04_03015 IPR002645 STAS domain CLD04_03015 IPR036513 STAS domain superfamily CLD04_03020 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_03020 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_03025 IPR036457 PPM-type phosphatase domain superfamily CLD04_03025 IPR001932 PPM-type phosphatase domain CLD04_03025 IPR014787 Phosphoserine phosphatase RsbU, N-terminal CLD04_03025 IPR017944 KaiA/RbsU helical domain superfamily CLD04_03030 IPR003658 Anti-sigma factor antagonist CLD04_03030 IPR002645 STAS domain CLD04_03030 IPR036513 STAS domain superfamily CLD04_03035 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_03035 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_03035 IPR010193 Serine-protein kinase RsbW CLD04_03040 IPR013324 RNA polymerase sigma factor, region 3/4-like CLD04_03040 IPR014288 RNA polymerase sigma-B factor CLD04_03040 IPR014284 RNA polymerase sigma-70 like domain CLD04_03040 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_03040 IPR013325 RNA polymerase sigma factor, region 2 CLD04_03040 IPR007630 RNA polymerase sigma-70 region 4 CLD04_03040 IPR007624 RNA polymerase sigma-70 region 3 CLD04_03040 IPR007627 RNA polymerase sigma-70 region 2 CLD04_03040 IPR000943 RNA polymerase sigma-70 CLD04_03040 IPR014322 RNA polymerase sigma-B/F/G type CLD04_03045 IPR001932 PPM-type phosphatase domain CLD04_03045 IPR036457 PPM-type phosphatase domain superfamily CLD04_03045 IPR039248 Phosphatase RsbX CLD04_03050 IPR032639 Tex protein, YqgF-like domain CLD04_03050 IPR010994 RuvA domain 2-like CLD04_03050 IPR012337 Ribonuclease H-like superfamily CLD04_03050 IPR006641 YqgF/RNase H-like domain CLD04_03050 IPR003029 S1 domain CLD04_03050 IPR037027 YqgF/RNase H-like domain superfamily CLD04_03050 IPR041692 HHH domain 9 CLD04_03050 IPR023323 Tex-like domain superfamily CLD04_03050 IPR023319 Tex-like protein, HTH domain superfamily CLD04_03050 IPR018974 Tex-like protein, N-terminal CLD04_03050 IPR012340 Nucleic acid-binding, OB-fold CLD04_03050 IPR022967 RNA-binding domain, S1 CLD04_03060 IPR006640 SprT-like CLD04_03060 IPR023524 Uncharacterised protein family SprT-like CLD04_03060 IPR035240 SprT-like, zinc ribbon domain CLD04_03100 IPR011010 DNA breaking-rejoining enzyme, catalytic core CLD04_03100 IPR013762 Integrase-like, catalytic domain superfamily CLD04_03100 IPR002104 Integrase, catalytic domain CLD04_03100 IPR010998 Integrase/recombinase, N-terminal CLD04_03100 IPR004107 Integrase, SAM-like, N-terminal CLD04_03110 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLD04_03110 IPR001387 Cro/C1-type helix-turn-helix domain CLD04_03135 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_03135 IPR002543 FtsK domain CLD04_03140 IPR003491 Replication initiation factor CLD04_03140 IPR040819 Rolling Circle replication initiation protein, N-terminal CLD04_03175 IPR024735 Conjugative transposon protein TcpC CLD04_03175 IPR035628 TcpC, C-terminal CLD04_03190 IPR016628 ATPase, SAG2001, predicted CLD04_03190 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_03195 IPR015055 Protein of unknown function DUF1874 CLD04_03195 IPR037236 STIV B116-like CLD04_03205 IPR038765 Papain-like cysteine peptidase superfamily CLD04_03205 IPR000064 Endopeptidase, NLPC/P60 domain CLD04_03205 IPR023346 Lysozyme-like domain superfamily CLD04_03215 IPR028075 Domain of unknown function with cystatin-like fold DUF4467 CLD04_03225 IPR019734 Tetratricopeptide repeat CLD04_03225 IPR011990 Tetratricopeptide-like helical domain superfamily CLD04_03225 IPR013026 Tetratricopeptide repeat-containing domain CLD04_03225 IPR040702 Response regulator aspartate phosphatase, N-terminal CLD04_03245 IPR037883 Knr4/Smi1-like domain superfamily CLD04_03245 IPR018958 Knr4/Smi1-like domain CLD04_03250 IPR026834 LHH CLD04_03250 IPR006829 LXG domain CLD04_03255 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLD04_03255 IPR001387 Cro/C1-type helix-turn-helix domain CLD04_03265 IPR005804 Fatty acid desaturase domain CLD04_03270 IPR002059 Cold-shock protein, DNA-binding CLD04_03270 IPR012156 Cold shock, CspA CLD04_03270 IPR019844 Cold-shock (CSD) domain CLD04_03270 IPR012340 Nucleic acid-binding, OB-fold CLD04_03270 IPR011129 Cold shock domain CLD04_03275 IPR042215 CarD-like, C-terminal domain CLD04_03275 IPR003711 CarD-like/TRCF domain CLD04_03275 IPR036101 CarD-like/TRCF domain superfamily CLD04_03285 IPR000620 EamA domain CLD04_03290 IPR003313 AraC-type arabinose-binding/dimerisation domain CLD04_03290 IPR014710 RmlC-like jelly roll fold CLD04_03290 IPR018062 HTH domain AraC-type, conserved site CLD04_03290 IPR018060 DNA binding HTH domain, AraC-type CLD04_03290 IPR020449 Transcription regulator HTH, AraC- type CLD04_03290 IPR037923 Transcription regulator HTH-like CLD04_03290 IPR009057 Homeobox-like domain superfamily CLD04_03295 IPR000620 EamA domain CLD04_03300 IPR029442 GyrI-like small molecule binding domain CLD04_03300 IPR010499 Bacterial transcription activator, effector binding CLD04_03300 IPR011256 Regulatory factor, effector binding domain superfamily CLD04_03300 IPR020449 Transcription regulator HTH, AraC- type CLD04_03300 IPR018060 DNA binding HTH domain, AraC-type CLD04_03300 IPR018062 HTH domain AraC-type, conserved site CLD04_03300 IPR009057 Homeobox-like domain superfamily CLD04_03305 IPR004839 Aminotransferase, class I/classII CLD04_03305 IPR036390 Winged helix DNA-binding domain superfamily CLD04_03305 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_03305 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_03305 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_03305 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_03305 IPR000524 Transcription regulator HTH, GntR CLD04_03315 IPR016786 Uncharacterised protein YdeI, bacterial CLD04_03315 IPR014922 Domain of unknown function DUF1801 CLD04_03330 IPR000032 Phosphocarrier protein HPr-like CLD04_03330 IPR035895 HPr-like superfamily CLD04_03330 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site CLD04_03330 IPR002114 Phosphotransferase system, HPr serine phosphorylation site CLD04_03335 IPR001647 DNA-binding HTH domain, TetR-type CLD04_03335 IPR009057 Homeobox-like domain superfamily CLD04_03340 IPR000620 EamA domain CLD04_03345 IPR036390 Winged helix DNA-binding domain superfamily CLD04_03345 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_03345 IPR004839 Aminotransferase, class I/classII CLD04_03345 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_03345 IPR000524 Transcription regulator HTH, GntR CLD04_03345 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_03350 IPR002539 MaoC-like dehydratase domain CLD04_03350 IPR029069 HotDog domain superfamily CLD04_03355 IPR010662 Putative hydrolase RBBP9/YdeN CLD04_03355 IPR029058 Alpha/Beta hydrolase fold CLD04_03360 IPR002577 Helix-turn-helix, HxlR type CLD04_03360 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_03360 IPR036390 Winged helix DNA-binding domain superfamily CLD04_03365 IPR019264 Domain of unknown function DUF2179 CLD04_03365 IPR003740 Uncharacterised membrane protein YitT CLD04_03365 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CLD04_03370 IPR011991 ArsR-like helix-turn-helix domain CLD04_03370 IPR001845 HTH ArsR-type DNA-binding domain CLD04_03370 IPR036390 Winged helix DNA-binding domain superfamily CLD04_03370 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_03375 IPR000802 Arsenical pump membrane protein, ArsB CLD04_03380 IPR014064 Arsenate reductase ArsC CLD04_03380 IPR036196 Phosphotyrosine protein phosphatase I superfamily CLD04_03380 IPR023485 Phosphotyrosine protein phosphatase I CLD04_03385 IPR016181 Acyl-CoA N-acyltransferase CLD04_03385 IPR000182 GNAT domain CLD04_03385 IPR027365 GNAT acetyltransferase YdfB-like CLD04_03390 IPR000620 EamA domain CLD04_03395 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_03395 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_03395 IPR000524 Transcription regulator HTH, GntR CLD04_03395 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_03395 IPR004839 Aminotransferase, class I/classII CLD04_03395 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_03395 IPR036390 Winged helix DNA-binding domain superfamily CLD04_03400 IPR002563 Flavin reductase like domain CLD04_03400 IPR012349 FMN-binding split barrel CLD04_03405 IPR001845 HTH ArsR-type DNA-binding domain CLD04_03405 IPR011991 ArsR-like helix-turn-helix domain CLD04_03405 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_03405 IPR036390 Winged helix DNA-binding domain superfamily CLD04_03410 IPR029032 AhpD-like CLD04_03410 IPR004675 Alkylhydroperoxidase AhpD core CLD04_03410 IPR003779 Carboxymuconolactone decarboxylase-like CLD04_03425 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_03425 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_03425 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain CLD04_03430 IPR011006 CheY-like superfamily CLD04_03430 IPR000792 Transcription regulator LuxR, C-terminal CLD04_03430 IPR016032 Signal transduction response regulator, C-terminal effector CLD04_03430 IPR001789 Signal transduction response regulator, receiver domain CLD04_03440 IPR029058 Alpha/Beta hydrolase fold CLD04_03440 IPR000073 Alpha/beta hydrolase fold-1 CLD04_03445 IPR007563 Protein of unknown function DUF554 CLD04_03450 IPR010499 Bacterial transcription activator, effector binding CLD04_03450 IPR009061 Putative DNA-binding domain superfamily CLD04_03450 IPR029442 GyrI-like small molecule binding domain CLD04_03450 IPR000551 MerR-type HTH domain CLD04_03450 IPR011256 Regulatory factor, effector binding domain superfamily CLD04_03470 IPR036837 Cation efflux protein, cytoplasmic domain superfamily CLD04_03470 IPR027469 Cation efflux transmembrane domain superfamily CLD04_03470 IPR027470 Cation efflux protein, cytoplasmic domain CLD04_03470 IPR002524 Cation efflux protein CLD04_03475 IPR000415 Nitroreductase-like CLD04_03475 IPR029479 Nitroreductase CLD04_03480 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CLD04_03480 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CLD04_03480 IPR037523 Vicinal oxygen chelate (VOC) domain CLD04_03485 IPR032808 DoxX family CLD04_03490 IPR036249 Thioredoxin-like superfamily CLD04_03490 IPR013766 Thioredoxin domain CLD04_03495 IPR019618 Spore germination protein GerPA/GerPF CLD04_03500 IPR019618 Spore germination protein GerPA/GerPF CLD04_03505 IPR007353 Protein of unknown function DUF421 CLD04_03505 IPR023090 UPF0702, alpha/beta domain superfamily CLD04_03510 IPR023090 UPF0702, alpha/beta domain superfamily CLD04_03510 IPR007353 Protein of unknown function DUF421 CLD04_03515 IPR002068 Alpha crystallin/Hsp20 domain CLD04_03515 IPR008978 HSP20-like chaperone CLD04_03520 IPR019618 Spore germination protein GerPA/GerPF CLD04_03525 IPR019618 Spore germination protein GerPA/GerPF CLD04_03530 IPR009057 Homeobox-like domain superfamily CLD04_03530 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CLD04_03530 IPR001647 DNA-binding HTH domain, TetR-type CLD04_03535 IPR032808 DoxX family CLD04_03540 IPR016181 Acyl-CoA N-acyltransferase CLD04_03540 IPR000182 GNAT domain CLD04_03550 IPR004841 Amino acid permease/ SLC12A domain CLD04_03550 IPR004840 Amino acid permease, conserved site CLD04_03560 IPR000835 MarR-type HTH domain CLD04_03560 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_03560 IPR036390 Winged helix DNA-binding domain superfamily CLD04_03565 IPR000731 Sterol-sensing domain CLD04_03565 IPR004869 Membrane transport protein MMPL domain CLD04_03570 IPR000415 Nitroreductase-like CLD04_03570 IPR029479 Nitroreductase CLD04_03575 IPR011991 ArsR-like helix-turn-helix domain CLD04_03575 IPR000835 MarR-type HTH domain CLD04_03575 IPR036390 Winged helix DNA-binding domain superfamily CLD04_03575 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_03575 IPR001845 HTH ArsR-type DNA-binding domain CLD04_03580 IPR011701 Major facilitator superfamily CLD04_03580 IPR020846 Major facilitator superfamily domain CLD04_03580 IPR036259 MFS transporter superfamily CLD04_03580 IPR004812 Drug resistance transporter Bcr/CmlA subfamily CLD04_03585 IPR002781 Transmembrane protein TauE-like CLD04_03590 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_03590 IPR000485 AsnC-type HTH domain CLD04_03590 IPR011711 GntR, C-terminal CLD04_03590 IPR008920 Transcription regulator FadR/GntR, C-terminal CLD04_03590 IPR000524 Transcription regulator HTH, GntR CLD04_03590 IPR036390 Winged helix DNA-binding domain superfamily CLD04_03595 IPR017853 Glycoside hydrolase superfamily CLD04_03595 IPR036779 LysM domain superfamily CLD04_03595 IPR011583 Chitinase II CLD04_03595 IPR018392 LysM domain CLD04_03595 IPR001223 Glycoside hydrolase family 18, catalytic domain CLD04_03595 IPR029070 Chitinase insertion domain superfamily CLD04_03595 IPR041704 CFLE, GH18 catalytic domain CLD04_03600 IPR006326 UDP-glycosyltransferase, MGT CLD04_03600 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase CLD04_03605 IPR012640 Membrane lipoprotein, lipid attachment site CLD04_03605 IPR029051 Domain of unknown function DUF4352 CLD04_03605 IPR029050 Immunoprotective extracellular, immunoglobulin-like domain superfamily CLD04_03610 IPR001952 Alkaline phosphatase CLD04_03610 IPR018299 Alkaline phosphatase, active site CLD04_03610 IPR017850 Alkaline-phosphatase-like, core domain superfamily CLD04_03615 IPR014922 Domain of unknown function DUF1801 CLD04_03620 IPR032545 Protein of unknown function DUF4944 CLD04_03625 IPR016181 Acyl-CoA N-acyltransferase CLD04_03625 IPR000182 GNAT domain CLD04_03630 IPR006674 HD domain CLD04_03630 IPR003607 HD/PDEase domain CLD04_03635 IPR011438 Domain of unknown function DUF1541 CLD04_03640 IPR011701 Major facilitator superfamily CLD04_03640 IPR020846 Major facilitator superfamily domain CLD04_03640 IPR036259 MFS transporter superfamily CLD04_03645 IPR013012 Phosphotransferase system, EIIB component, type 3 CLD04_03645 IPR003501 Phosphotransferase system, EIIB component, type 2/3 CLD04_03645 IPR036095 PTS system IIB component-like superfamily CLD04_03650 IPR036542 Phosphotransferase system, lactose/cellobiose-type IIA subunit superfamily CLD04_03650 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit CLD04_03655 IPR003352 Phosphotransferase system, EIIC CLD04_03655 IPR004501 Phosphotransferase system, EIIC component, type 3 CLD04_03655 IPR004796 Phosphotransferase system, cellobiose-type IIC component CLD04_03660 IPR001360 Glycoside hydrolase family 1 CLD04_03660 IPR018120 Glycoside hydrolase family 1, active site CLD04_03660 IPR017853 Glycoside hydrolase superfamily CLD04_03665 IPR036390 Winged helix DNA-binding domain superfamily CLD04_03665 IPR000524 Transcription regulator HTH, GntR CLD04_03665 IPR011663 UbiC transcription regulator-associated CLD04_03665 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily CLD04_03665 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_03670 IPR000600 ROK family CLD04_03675 IPR014628 Mannose-6-phosphate isomerase, Firmicutes type, short form CLD04_03675 IPR014710 RmlC-like jelly roll fold CLD04_03675 IPR011051 RmlC-like cupin domain superfamily CLD04_03675 IPR001250 Mannose-6-phosphate isomerase, type I CLD04_03680 IPR017853 Glycoside hydrolase superfamily CLD04_03680 IPR000805 Glycoside hydrolase family 26 CLD04_03680 IPR022790 Glycosyl hydrolase family 26 domain CLD04_03680 IPR016714 Mannan endo-1,4-beta-mannosidase CLD04_03725 IPR036676 PurM-like, C-terminal domain superfamily CLD04_03725 IPR006283 Thiamine-monophosphate kinase CLD04_03725 IPR036921 PurM-like, N-terminal domain superfamily CLD04_03725 IPR016188 PurM-like, N-terminal domain CLD04_03725 IPR010918 PurM-like, C-terminal domain CLD04_03730 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_03730 IPR003442 tRNA threonylcarbamoyl adenosine modification protein TsaE CLD04_03735 IPR022496 tRNA threonylcarbamoyl adenosine modification protein TsaB CLD04_03735 IPR000905 Gcp-like domain CLD04_03740 IPR000182 GNAT domain CLD04_03740 IPR016181 Acyl-CoA N-acyltransferase CLD04_03740 IPR006464 N-acetyltransferase RimI/Ard1 CLD04_03745 IPR000905 Gcp-like domain CLD04_03745 IPR017861 Kae1/TsaD family CLD04_03745 IPR017860 Peptidase M22, conserved site CLD04_03745 IPR022450 tRNA N6-adenosine threonylcarbamoyltransferase, TsaD CLD04_03750 IPR003593 AAA+ ATPase domain CLD04_03750 IPR032781 ABC-transporter extension domain CLD04_03750 IPR003439 ABC transporter-like CLD04_03750 IPR017871 ABC transporter, conserved site CLD04_03750 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily CLD04_03750 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_03750 IPR032524 ABC transporter Uup, C-terminal CLD04_03755 IPR002820 Molybdopterin cofactor biosynthesis C (MoaC) domain CLD04_03755 IPR036522 Molybdopterin cofactor biosynthesis C (MoaC) domain superfamily CLD04_03755 IPR023045 Molybdenum cofactor biosynthesis C CLD04_03760 IPR022876 Redox-sensing transcriptional repressor Rex CLD04_03760 IPR036291 NAD(P)-binding domain superfamily CLD04_03760 IPR003781 CoA-binding CLD04_03760 IPR036390 Winged helix DNA-binding domain superfamily CLD04_03760 IPR009718 Rex DNA-binding, C-terminal domain CLD04_03760 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_03765 IPR003369 Sec-independent protein translocase protein TatA/B/E CLD04_03765 IPR006312 Sec-independent protein translocase protein TatA/E CLD04_03770 IPR019820 Sec-independent periplasmic protein translocase, conserved site CLD04_03770 IPR002033 Sec-independent periplasmic protein translocase TatC CLD04_03780 IPR025426 Protein of unknown function DUF4305 CLD04_03785 IPR003675 CAAX prenyl protease 2 CLD04_03790 IPR037124 GroES chaperonin superfamily CLD04_03790 IPR018369 Chaperonin GroES, conserved site CLD04_03790 IPR011032 GroES-like superfamily CLD04_03790 IPR020818 GroES chaperonin family CLD04_03795 IPR027410 TCP-1-like chaperonin intermediate domain superfamily CLD04_03795 IPR027413 GroEL-like equatorial domain superfamily CLD04_03795 IPR027409 GroEL-like apical domain superfamily CLD04_03795 IPR018370 Chaperonin Cpn60, conserved site CLD04_03795 IPR002423 Chaperonin Cpn60/TCP-1 family CLD04_03795 IPR001844 Chaperonin Cpn60 CLD04_03800 IPR036366 PGBD superfamily CLD04_03800 IPR015020 Protein of unknown function DUF1906 CLD04_03800 IPR017853 Glycoside hydrolase superfamily CLD04_03800 IPR036365 PGBD-like superfamily CLD04_03800 IPR002477 Peptidoglycan binding-like CLD04_03815 IPR003593 AAA+ ATPase domain CLD04_03815 IPR011990 Tetratricopeptide-like helical domain superfamily CLD04_03815 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_03815 IPR002182 NB-ARC CLD04_03815 IPR019734 Tetratricopeptide repeat CLD04_03815 IPR013026 Tetratricopeptide repeat-containing domain CLD04_03820 IPR013149 Alcohol dehydrogenase, C-terminal CLD04_03820 IPR036291 NAD(P)-binding domain superfamily CLD04_03820 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site CLD04_03820 IPR013154 Alcohol dehydrogenase, N-terminal CLD04_03820 IPR020843 Polyketide synthase, enoylreductase domain CLD04_03820 IPR011032 GroES-like superfamily CLD04_03825 IPR036259 MFS transporter superfamily CLD04_03825 IPR020846 Major facilitator superfamily domain CLD04_03825 IPR001927 Sodium:galactoside symporter CLD04_03825 IPR039672 Lactose permease-like CLD04_03825 IPR018043 Sodium:galactoside symporter, conserved site CLD04_03830 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site CLD04_03830 IPR011611 Carbohydrate kinase PfkB CLD04_03830 IPR029056 Ribokinase-like CLD04_03835 IPR007157 PspA/IM30 CLD04_03840 IPR013137 Zinc finger, TFIIB-type CLD04_03845 IPR007621 TPM domain CLD04_03850 IPR033880 SPFH domain, YdjI-like CLD04_03850 IPR036013 Band 7/SPFH domain superfamily CLD04_03860 IPR005829 Sugar transporter, conserved site CLD04_03860 IPR005828 Major facilitator, sugar transporter-like CLD04_03860 IPR020846 Major facilitator superfamily domain CLD04_03860 IPR036259 MFS transporter superfamily CLD04_03860 IPR003663 Sugar/inositol transporter CLD04_03865 IPR011032 GroES-like superfamily CLD04_03865 IPR036291 NAD(P)-binding domain superfamily CLD04_03865 IPR013154 Alcohol dehydrogenase, N-terminal CLD04_03865 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site CLD04_03865 IPR020843 Polyketide synthase, enoylreductase domain CLD04_03865 IPR013149 Alcohol dehydrogenase, C-terminal CLD04_03870 IPR009009 RlpA-like protein, double-psi beta-barrel domain CLD04_03875 IPR015943 WD40/YVTN repeat-like-containing domain superfamily CLD04_03875 IPR011659 WD40-like Beta Propeller CLD04_03885 IPR025916 Cold-inducible protein YdjO CLD04_03890 IPR029058 Alpha/Beta hydrolase fold CLD04_03890 IPR000073 Alpha/beta hydrolase fold-1 CLD04_03900 IPR001117 Multicopper oxidase, type 1 CLD04_03900 IPR011707 Multicopper oxidase, type 3 CLD04_03900 IPR008972 Cupredoxin CLD04_03900 IPR011706 Multicopper oxidase, type 2 CLD04_03905 IPR004841 Amino acid permease/ SLC12A domain CLD04_03905 IPR011265 GABA permease CLD04_03905 IPR004840 Amino acid permease, conserved site CLD04_03915 IPR027470 Cation efflux protein, cytoplasmic domain CLD04_03915 IPR036837 Cation efflux protein, cytoplasmic domain superfamily CLD04_03915 IPR002524 Cation efflux protein CLD04_03915 IPR027469 Cation efflux transmembrane domain superfamily CLD04_03920 IPR041628 ChlI/MoxR, AAA lid domain CLD04_03920 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_03920 IPR011703 ATPase, AAA-3 CLD04_03925 IPR002881 Domain of unknown function DUF58 CLD04_03930 IPR025403 Domain of unknown function DUF4129 CLD04_03930 IPR021878 Protein-glutamine gamma-glutamyltransferase TgpA, N-terminal CLD04_03930 IPR002931 Transglutaminase-like CLD04_03930 IPR038765 Papain-like cysteine peptidase superfamily CLD04_03935 IPR025777 GMP synthetase ATP pyrophosphatase domain CLD04_03935 IPR022310 NAD/GMP synthase CLD04_03935 IPR017926 Glutamine amidotransferase CLD04_03935 IPR001674 GMP synthase, C-terminal CLD04_03935 IPR004739 GMP synthase, glutamine amidotransferase CLD04_03935 IPR029062 Class I glutamine amidotransferase-like CLD04_03935 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLD04_03935 IPR022955 GMP synthase CLD04_03945 IPR026033 Azaguanine-like transporters CLD04_03945 IPR006043 Xanthine/uracil/vitamin C permease CLD04_03955 IPR025072 Fur-regulated basic protein A CLD04_03960 IPR019264 Domain of unknown function DUF2179 CLD04_03960 IPR022930 Protein of unknown function UPF0316 CLD04_03965 IPR025930 NETI protein CLD04_03970 IPR000031 PurE domain CLD04_03970 IPR033747 Class I PurE CLD04_03970 IPR024694 PurE, prokaryotic type CLD04_03970 IPR035893 PurE domain superfamily CLD04_03975 IPR016185 Pre-ATP-grasp domain superfamily CLD04_03975 IPR011054 Rudiment single hybrid motif CLD04_03975 IPR040686 Phosphoribosylaminoimidazole carboxylase, C-terminal domain CLD04_03975 IPR005875 Phosphoribosylaminoimidazole carboxylase, ATPase subunit CLD04_03975 IPR011761 ATP-grasp fold CLD04_03975 IPR003135 ATP-grasp fold, ATP-dependent carboxylate-amine ligase-type CLD04_03975 IPR013815 ATP-grasp fold, subdomain 1 CLD04_03980 IPR024083 Fumarase/histidase, N-terminal CLD04_03980 IPR020557 Fumarate lyase, conserved site CLD04_03980 IPR000362 Fumarate lyase family CLD04_03980 IPR004769 Adenylosuccinate lyase CLD04_03980 IPR019468 Adenylosuccinate lyase C-terminal CLD04_03980 IPR022761 Fumarate lyase, N-terminal CLD04_03980 IPR008948 L-Aspartase-like CLD04_03985 IPR028923 SAICAR synthetase/ADE2, N-terminal CLD04_03985 IPR018236 SAICAR synthetase, conserved site CLD04_03985 IPR001636 Phosphoribosylaminoimidazole-succinocarboxamide synthase CLD04_03985 IPR033934 Bacterial and archaeal 5-aminoimidazole-4-(N-succinylcarboxamide) ribonucleotide synthase CLD04_03990 IPR003850 Phosphoribosylformylglycinamidine synthase subunit PurS CLD04_03990 IPR036604 Phosphoribosylformylglycinamidine synthase subunit PurS-like superfamily CLD04_03995 IPR010075 Phosphoribosylformylglycinamidine synthase subunit PurQ CLD04_03995 IPR029062 Class I glutamine amidotransferase-like CLD04_03995 IPR017926 Glutamine amidotransferase CLD04_04000 IPR036921 PurM-like, N-terminal domain superfamily CLD04_04000 IPR010918 PurM-like, C-terminal domain CLD04_04000 IPR041609 Phosphoribosylformylglycinamidine synthase, linker domain CLD04_04000 IPR010074 Phosphoribosylformylglycinamidine subunit PurL CLD04_04000 IPR016188 PurM-like, N-terminal domain CLD04_04000 IPR036676 PurM-like, C-terminal domain superfamily CLD04_04005 IPR017932 Glutamine amidotransferase type 2 domain CLD04_04005 IPR005854 Amidophosphoribosyltransferase CLD04_04005 IPR035584 Amidophosphoribosyltransferase, N-terminal CLD04_04005 IPR029057 Phosphoribosyltransferase-like CLD04_04005 IPR029055 Nucleophile aminohydrolases, N-terminal CLD04_04005 IPR000836 Phosphoribosyltransferase domain CLD04_04010 IPR036676 PurM-like, C-terminal domain superfamily CLD04_04010 IPR010918 PurM-like, C-terminal domain CLD04_04010 IPR016188 PurM-like, N-terminal domain CLD04_04010 IPR004733 Phosphoribosylformylglycinamidine cyclo-ligase CLD04_04010 IPR036921 PurM-like, N-terminal domain superfamily CLD04_04015 IPR036477 Formyl transferase, N-terminal domain superfamily CLD04_04015 IPR002376 Formyl transferase, N-terminal CLD04_04015 IPR004607 Phosphoribosylglycinamide formyltransferase CLD04_04015 IPR001555 Phosphoribosylglycinamide formyltransferase, active site CLD04_04020 IPR036914 Methylglyoxal synthase-like domain superfamily CLD04_04020 IPR024051 AICAR transformylase, duplicated domain superfamily CLD04_04020 IPR016193 Cytidine deaminase-like CLD04_04020 IPR011607 Methylglyoxal synthase-like domain CLD04_04020 IPR002695 Bifunctional purine biosynthesis protein PurH-like CLD04_04025 IPR011761 ATP-grasp fold CLD04_04025 IPR013815 ATP-grasp fold, subdomain 1 CLD04_04025 IPR020561 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CLD04_04025 IPR000115 Phosphoribosylglycinamide synthetase CLD04_04025 IPR016185 Pre-ATP-grasp domain superfamily CLD04_04025 IPR037123 Phosphoribosylglycinamide synthetase, C-domain superfamily CLD04_04025 IPR011054 Rudiment single hybrid motif CLD04_04025 IPR020560 Phosphoribosylglycinamide synthetase, C-domain CLD04_04025 IPR020559 Phosphoribosylglycinamide synthetase, conserved site CLD04_04025 IPR020562 Phosphoribosylglycinamide synthetase, N-terminal CLD04_04030 IPR036390 Winged helix DNA-binding domain superfamily CLD04_04030 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_04030 IPR019885 Transcription regulator HTH, AsnC-type, conserved site CLD04_04030 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CLD04_04030 IPR019888 Transcription regulator AsnC-type CLD04_04030 IPR011008 Dimeric alpha-beta barrel CLD04_04030 IPR000485 AsnC-type HTH domain CLD04_04030 IPR011991 ArsR-like helix-turn-helix domain CLD04_04035 IPR002293 Amino acid/polyamine transporter I CLD04_04040 IPR021309 Protein of unknown function DUF2892 CLD04_04045 IPR026912 Adenine deaminase C-terminal domain CLD04_04045 IPR032466 Metal-dependent hydrolase CLD04_04045 IPR011059 Metal-dependent hydrolase, composite domain superfamily CLD04_04045 IPR006679 Adenine deaminase CLD04_04045 IPR006680 Amidohydrolase-related CLD04_04050 IPR035328 Protein of unknown function DUF3048, C-terminal domain CLD04_04050 IPR021416 Protein of unknown function DUF3048, N-terminal CLD04_04050 IPR023158 YerB-like superfamily CLD04_04055 IPR013368 TrpR homologue YerC/YecD CLD04_04055 IPR038116 TrpR-like superfamily CLD04_04055 IPR010921 Trp repressor/replication initiator CLD04_04055 IPR000831 Trp repressor CLD04_04060 IPR013785 Aldolase-type TIM barrel CLD04_04060 IPR002932 Glutamate synthase domain CLD04_04060 IPR024188 Glutamate synthase large subunit-like protein CLD04_04060 IPR027283 Glutamate synthase large subunit-like protein, bacteria CLD04_04065 IPR008205 Geranylgeranylglyceryl phosphate synthase/Heptaprenylglyceryl phosphate synthase CLD04_04065 IPR038597 GGGP/HepGP synthase superfamily CLD04_04065 IPR039074 GGGP/HepGP synthase group I CLD04_04070 IPR013986 DExx box DNA helicase domain superfamily CLD04_04070 IPR034739 UvrD/AddA helicase, N-terminal CLD04_04070 IPR014016 UvrD-like helicase, ATP-binding domain CLD04_04070 IPR005751 ATP-dependent DNA helicase PcrA CLD04_04070 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_04070 IPR000212 DNA helicase, UvrD/REP type CLD04_04070 IPR014017 UvrD-like DNA helicase, C-terminal CLD04_04075 IPR001357 BRCT domain CLD04_04075 IPR012340 Nucleic acid-binding, OB-fold CLD04_04075 IPR018239 NAD-dependent DNA ligase, active site CLD04_04075 IPR033136 NAD-dependent DNA ligase, conserved site CLD04_04075 IPR001679 NAD-dependent DNA ligase CLD04_04075 IPR013839 NAD-dependent DNA ligase, adenylation CLD04_04075 IPR013840 NAD-dependent DNA ligase, N-terminal CLD04_04075 IPR004149 Zinc-finger, NAD-dependent DNA ligase C4-type CLD04_04075 IPR010994 RuvA domain 2-like CLD04_04075 IPR004150 NAD-dependent DNA ligase, OB-fold CLD04_04075 IPR041663 DisA/LigA, helix-hairpin-helix motif CLD04_04075 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 CLD04_04075 IPR036420 BRCT domain superfamily CLD04_04080 IPR011426 CamS sex pheromone cAM373 CLD04_04090 IPR002575 Aminoglycoside phosphotransferase CLD04_04090 IPR011009 Protein kinase-like domain superfamily CLD04_04095 IPR003416 MgtC/SapB/SrpB/YhiD family CLD04_04100 IPR038377 Sodium/glucose symporter superfamily CLD04_04100 IPR001734 Sodium/solute symporter CLD04_04100 IPR011851 Sodium/proline symporter CLD04_04100 IPR018212 Sodium/solute symporter, conserved site CLD04_04105 IPR003837 Glu-tRNAGln amidotransferase C subunit CLD04_04105 IPR036113 Glu-tRNAGln amidotransferase superfamily, subunit C CLD04_04110 IPR000120 Amidase CLD04_04110 IPR004412 Glutamyl-tRNA(Gln) amidotransferase A subunit CLD04_04110 IPR036928 Amidase signature (AS) superfamily CLD04_04110 IPR023631 Amidase signature domain CLD04_04110 IPR020556 Amidase, conserved site CLD04_04115 IPR004413 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, B subunit CLD04_04115 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 2 CLD04_04115 IPR017959 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, subunit B /E CLD04_04115 IPR017958 Glutamyl-tRNA(Gln) amidotransferase, subunit B, conserved site CLD04_04115 IPR042114 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 1 CLD04_04115 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain CLD04_04115 IPR006075 Aspartyl/Glutamyl-tRNA(Gln) amidotransferase, subunit B/E, catalytic CLD04_04115 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like CLD04_04115 IPR018027 Asn/Gln amidotransferase CLD04_04125 IPR001036 Acriflavin resistance protein CLD04_04125 IPR027463 Multidrug efflux transporter AcrB TolC docking domain, DN/DC subdomains CLD04_04130 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily CLD04_04130 IPR005218 Diacylglycerol/lipid kinase CLD04_04130 IPR001206 Diacylglycerol kinase, catalytic domain CLD04_04130 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal CLD04_04135 IPR030390 RNA methyltransferase TrmA, active site CLD04_04135 IPR002792 TRAM domain CLD04_04135 IPR010280 (Uracil-5)-methyltransferase family CLD04_04135 IPR012340 Nucleic acid-binding, OB-fold CLD04_04135 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_04135 IPR030391 RNA methyltransferase TrmA, conserved site CLD04_04140 IPR011109 DNA-binding recombinase domain CLD04_04140 IPR038109 DNA-binding recombinase domain superfamily CLD04_04140 IPR025827 Recombinase zinc beta ribbon domain CLD04_04145 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily CLD04_04145 IPR006119 Resolvase, N-terminal catalytic domain CLD04_04145 IPR009057 Homeobox-like domain superfamily CLD04_04145 IPR040652 Cry35Ab1 , HTH C-terminal domain CLD04_04150 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_04155 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_04155 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLD04_04160 IPR018306 Bacteriophage T5, Orf172 DNA-binding CLD04_04170 IPR035900 Colicin E immunity protein superfamily CLD04_04175 IPR006728 Protein of unknown function DUF600 CLD04_04175 IPR036170 Probable antitoxin YezG superfamily CLD04_04180 IPR006829 LXG domain CLD04_04190 IPR040702 Response regulator aspartate phosphatase, N-terminal CLD04_04190 IPR013026 Tetratricopeptide repeat-containing domain CLD04_04190 IPR011990 Tetratricopeptide-like helical domain superfamily CLD04_04190 IPR019734 Tetratricopeptide repeat CLD04_04200 IPR029072 YebC-like CLD04_04200 IPR017856 Integrase-like, N-terminal CLD04_04200 IPR026564 Transcriptional regulator TACO1-like, domain 3 CLD04_04200 IPR002876 Transcriptional regulator TACO1-like CLD04_04200 IPR026562 Probable transcriptional regulatory protein YeeN CLD04_04210 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CLD04_04210 IPR001647 DNA-binding HTH domain, TetR-type CLD04_04210 IPR009057 Homeobox-like domain superfamily CLD04_04215 IPR032710 NTF2-like domain superfamily CLD04_04215 IPR037401 SnoaL-like domain CLD04_04225 IPR020256 Spore coat protein CotJA CLD04_04230 IPR016571 Spore coat assembly protein CotJB CLD04_04230 IPR024207 Spore coat assembly protein CotJB, domain CLD04_04235 IPR012347 Ferritin-like CLD04_04235 IPR007760 Manganese catalase CLD04_04235 IPR009078 Ferritin-like superfamily CLD04_04235 IPR039377 Manganese catalase, ferritin-like di-iron-binding domain CLD04_04240 IPR000182 GNAT domain CLD04_04240 IPR016181 Acyl-CoA N-acyltransferase CLD04_04250 IPR006938 Protein of unknown function DUF624 CLD04_04255 IPR033479 Double Cache domain 1 CLD04_04255 IPR005467 Histidine kinase domain CLD04_04255 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_04255 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_04255 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLD04_04255 IPR010559 Signal transduction histidine kinase, internal region CLD04_04255 IPR003660 HAMP domain CLD04_04260 IPR006059 Bacterial extracellular solute-binding protein CLD04_04265 IPR035906 MetI-like superfamily CLD04_04265 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_04270 IPR035906 MetI-like superfamily CLD04_04270 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_04275 IPR010905 Glycosyl hydrolase, family 88 CLD04_04275 IPR012341 Six-hairpin glycosidase-like superfamily CLD04_04275 IPR008928 Six-hairpin glycosidase superfamily CLD04_04280 IPR018062 HTH domain AraC-type, conserved site CLD04_04280 IPR018060 DNA binding HTH domain, AraC-type CLD04_04280 IPR009057 Homeobox-like domain superfamily CLD04_04285 IPR013830 SGNH hydrolase-type esterase domain CLD04_04285 IPR036514 SGNH hydrolase superfamily CLD04_04285 IPR037459 Rhamnogalacturonan acetylesterase RhgT-like CLD04_04290 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily CLD04_04290 IPR015305 Protein of unknown function DUF1961 CLD04_04295 IPR006938 Protein of unknown function DUF624 CLD04_04305 IPR034641 Polysaccharide lyase family 11 CLD04_04305 IPR041624 Rhamnogalacturonan I lyase beta-sheet domain CLD04_04305 IPR013517 FG-GAP repeat CLD04_04305 IPR013783 Immunoglobulin-like fold CLD04_04310 IPR001087 GDSL lipase/esterase CLD04_04310 IPR037459 Rhamnogalacturonan acetylesterase RhgT-like CLD04_04310 IPR036514 SGNH hydrolase superfamily CLD04_04325 IPR006059 Bacterial extracellular solute-binding protein CLD04_04330 IPR035906 MetI-like superfamily CLD04_04330 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_04335 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_04335 IPR035906 MetI-like superfamily CLD04_04340 IPR001088 Glycoside hydrolase, family 4 CLD04_04340 IPR019802 Glycoside hydrolase, family 4, conserved site CLD04_04340 IPR036291 NAD(P)-binding domain superfamily CLD04_04340 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal CLD04_04340 IPR022616 Glycosyl hydrolase, family 4, C-terminal CLD04_04345 IPR023090 UPF0702, alpha/beta domain superfamily CLD04_04345 IPR007353 Protein of unknown function DUF421 CLD04_04350 IPR007138 Antibiotic biosynthesis monooxygenase domain CLD04_04350 IPR011008 Dimeric alpha-beta barrel CLD04_04355 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CLD04_04355 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CLD04_04355 IPR037523 Vicinal oxygen chelate (VOC) domain CLD04_04365 IPR036513 STAS domain superfamily CLD04_04365 IPR002645 STAS domain CLD04_04370 IPR018743 Protein of unknown function DUF2292 CLD04_04375 IPR006214 Bax inhibitor 1-related CLD04_04390 IPR036188 FAD/NAD(P)-binding domain superfamily CLD04_04390 IPR002938 FAD-binding domain CLD04_04395 IPR025012 Domain of unknown function DUF3898 CLD04_04395 IPR025006 Protein of unknown function DUF3900 CLD04_04400 IPR001094 Flavodoxin-like CLD04_04400 IPR008254 Flavodoxin/nitric oxide synthase CLD04_04400 IPR029039 Flavoprotein-like superfamily CLD04_04400 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase CLD04_04400 IPR017938 Riboflavin synthase-like beta-barrel CLD04_04400 IPR036396 Cytochrome P450 superfamily CLD04_04400 IPR017972 Cytochrome P450, conserved site CLD04_04400 IPR001433 Oxidoreductase FAD/NAD(P)-binding CLD04_04400 IPR017927 FAD-binding domain, ferredoxin reductase-type CLD04_04400 IPR001128 Cytochrome P450 CLD04_04400 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily CLD04_04400 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CLD04_04400 IPR023206 Bifunctional cytochrome P450/NADPH--cytochrome P450 reductase CLD04_04400 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding CLD04_04405 IPR017850 Alkaline-phosphatase-like, core domain superfamily CLD04_04405 IPR012160 Lipoteichoic acid synthase-like CLD04_04405 IPR000917 Sulfatase, N-terminal CLD04_04410 IPR005835 Nucleotidyl transferase domain CLD04_04410 IPR013446 Glucose-1-phosphate cytidylyltransferase CLD04_04410 IPR029044 Nucleotide-diphospho-sugar transferases CLD04_04415 IPR016040 NAD(P)-binding domain CLD04_04415 IPR036291 NAD(P)-binding domain superfamily CLD04_04420 IPR029044 Nucleotide-diphospho-sugar transferases CLD04_04420 IPR005069 Nucleotide-diphospho-sugar transferase CLD04_04425 IPR029044 Nucleotide-diphospho-sugar transferases CLD04_04425 IPR001173 Glycosyltransferase 2-like CLD04_04430 IPR029044 Nucleotide-diphospho-sugar transferases CLD04_04430 IPR005069 Nucleotide-diphospho-sugar transferase CLD04_04435 IPR036259 MFS transporter superfamily CLD04_04435 IPR020846 Major facilitator superfamily domain CLD04_04435 IPR011701 Major facilitator superfamily CLD04_04440 IPR006439 HAD hydrolase, subfamily IA CLD04_04440 IPR036412 HAD-like superfamily CLD04_04440 IPR023214 HAD superfamily CLD04_04440 IPR023198 Phosphoglycolate phosphatase-like, domain 2 CLD04_04440 IPR011951 HAD-superfamily hydrolase, subfamily IA, YjjG/YfnB CLD04_04440 IPR041492 Haloacid dehalogenase-like hydrolase CLD04_04445 IPR002293 Amino acid/polyamine transporter I CLD04_04450 IPR016162 Aldehyde dehydrogenase, N-terminal CLD04_04450 IPR015590 Aldehyde dehydrogenase domain CLD04_04450 IPR016163 Aldehyde dehydrogenase, C-terminal CLD04_04450 IPR016161 Aldehyde/histidinol dehydrogenase CLD04_04450 IPR029510 Aldehyde dehydrogenase, glutamic acid active site CLD04_04455 IPR029151 Periplasmic sensor-like domain superfamily CLD04_04455 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLD04_04460 IPR017871 ABC transporter, conserved site CLD04_04460 IPR032524 ABC transporter Uup, C-terminal CLD04_04460 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily CLD04_04460 IPR003439 ABC transporter-like CLD04_04460 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_04460 IPR032781 ABC-transporter extension domain CLD04_04460 IPR003593 AAA+ ATPase domain CLD04_04465 IPR019723 Uncharacterised protein, YfmQ CLD04_04470 IPR009061 Putative DNA-binding domain superfamily CLD04_04470 IPR037392 YfmP, Helix-Turn-Helix DNA binding domain CLD04_04470 IPR000551 MerR-type HTH domain CLD04_04475 IPR011701 Major facilitator superfamily CLD04_04475 IPR020846 Major facilitator superfamily domain CLD04_04475 IPR036259 MFS transporter superfamily CLD04_04475 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG CLD04_04490 IPR003593 AAA+ ATPase domain CLD04_04490 IPR032781 ABC-transporter extension domain CLD04_04490 IPR003439 ABC transporter-like CLD04_04490 IPR017871 ABC transporter, conserved site CLD04_04490 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_04495 IPR011545 DEAD/DEAH box helicase domain CLD04_04495 IPR001650 Helicase, C-terminal CLD04_04495 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_04495 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLD04_04500 IPR000182 GNAT domain CLD04_04500 IPR016181 Acyl-CoA N-acyltransferase CLD04_04505 IPR020843 Polyketide synthase, enoylreductase domain CLD04_04505 IPR013149 Alcohol dehydrogenase, C-terminal CLD04_04505 IPR036291 NAD(P)-binding domain superfamily CLD04_04505 IPR011032 GroES-like superfamily CLD04_04505 IPR041694 Oxidoreductase, N-terminal domain CLD04_04510 IPR003439 ABC transporter-like CLD04_04510 IPR017871 ABC transporter, conserved site CLD04_04510 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_04510 IPR003593 AAA+ ATPase domain CLD04_04515 IPR037294 ABC transporter, BtuC-like CLD04_04515 IPR000522 ABC transporter, permease protein, BtuC-like CLD04_04520 IPR000522 ABC transporter, permease protein, BtuC-like CLD04_04520 IPR037294 ABC transporter, BtuC-like CLD04_04525 IPR002491 ABC transporter periplasmic binding domain CLD04_04530 IPR038074 YfmB domain superfamily CLD04_04530 IPR021579 Protein of unknown function DUF3212 CLD04_04540 IPR025889 General stress protein 17M-like domain CLD04_04545 IPR002022 Pectate lyase CLD04_04545 IPR011050 Pectin lyase fold/virulence factor CLD04_04545 IPR012334 Pectin lyase fold CLD04_04550 IPR001898 Solute carrier family 13 CLD04_04550 IPR030676 Citrate carrier CitT-related CLD04_04555 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_04555 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_04555 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB CLD04_04555 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLD04_04555 IPR039506 SpoOB, alpha-helical domain CLD04_04555 IPR035965 PAS domain superfamily CLD04_04555 IPR005467 Histidine kinase domain CLD04_04555 IPR029151 Periplasmic sensor-like domain superfamily CLD04_04560 IPR013196 Helix-turn-helix, type 11 CLD04_04560 IPR011006 CheY-like superfamily CLD04_04560 IPR028141 Transcriptional regulator CLD04_04560 IPR001789 Signal transduction response regulator, receiver domain CLD04_04560 IPR024187 Signal transduction response regulator, citrate/malate metabolism CLD04_04565 IPR005064 Bordetella uptake gene CLD04_04565 IPR042100 Bordetella uptake gene, domain 1 CLD04_04570 IPR014738 Citrate transporter CLD04_04570 IPR004680 Citrate transporter-like domain CLD04_04575 IPR001279 Metallo-beta-lactamase CLD04_04575 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLD04_04580 IPR004030 Nitric oxide synthase, N-terminal CLD04_04580 IPR017142 Nitric oxide synthase, oxygenase subunit CLD04_04580 IPR036119 Nitric oxide synthase, N-terminal domain superfamily CLD04_04585 IPR001792 Acylphosphatase-like domain CLD04_04585 IPR017968 Acylphosphatase, conserved site CLD04_04585 IPR036046 Acylphosphatase-like domain superfamily CLD04_04585 IPR020456 Acylphosphatase CLD04_04590 IPR011037 Pyruvate kinase-like, insert domain superfamily CLD04_04590 IPR005163 3-alpha domain CLD04_04590 IPR005302 Molybdenum cofactor sulfurase, C-terminal CLD04_04595 IPR022580 Protein of unknown function DUF2639 CLD04_04605 IPR038292 YmfJ/YflH superfamily CLD04_04605 IPR021637 Protein of unknown function DUF3243 CLD04_04610 IPR002467 Peptidase M24A, methionine aminopeptidase, subfamily 1 CLD04_04610 IPR036005 Creatinase/aminopeptidase-like CLD04_04610 IPR001714 Peptidase M24, methionine aminopeptidase CLD04_04610 IPR000994 Peptidase M24 CLD04_04615 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site CLD04_04615 IPR003352 Phosphotransferase system, EIIC CLD04_04615 IPR013013 Phosphotransferase system, EIIC component, type 1 CLD04_04615 IPR001996 Phosphotransferase system, IIB component, type 1 CLD04_04615 IPR036878 Glucose permease domain IIB CLD04_04615 IPR010974 Phosphotransferase system, N-acetylglucosamine-specific IIBC component CLD04_04620 IPR017850 Alkaline-phosphatase-like, core domain superfamily CLD04_04620 IPR012160 Lipoteichoic acid synthase-like CLD04_04620 IPR000917 Sulfatase, N-terminal CLD04_04630 IPR018961 DnaJ homologue, subfamily C, member 28, conserved domain CLD04_04645 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component CLD04_04645 IPR011296 Phosphotransferase system, trehalose-specific IIBC component CLD04_04645 IPR001996 Phosphotransferase system, IIB component, type 1 CLD04_04645 IPR013013 Phosphotransferase system, EIIC component, type 1 CLD04_04645 IPR036878 Glucose permease domain IIB CLD04_04645 IPR003352 Phosphotransferase system, EIIC CLD04_04645 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site CLD04_04650 IPR032091 Maltogenic Amylase, C-terminal CLD04_04650 IPR013780 Glycosyl hydrolase, all-beta CLD04_04650 IPR017853 Glycoside hydrolase superfamily CLD04_04650 IPR012769 Trehalose-6-phosphate hydrolase CLD04_04650 IPR006047 Glycosyl hydrolase, family 13, catalytic domain CLD04_04655 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_04655 IPR011663 UbiC transcription regulator-associated CLD04_04655 IPR036390 Winged helix DNA-binding domain superfamily CLD04_04655 IPR000524 Transcription regulator HTH, GntR CLD04_04655 IPR012770 Trehalose operon transcriptional repressor CLD04_04655 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily CLD04_04660 IPR029479 Nitroreductase CLD04_04660 IPR000415 Nitroreductase-like CLD04_04660 IPR033878 Nitroreductase NfsB-like CLD04_04665 IPR006179 5'-Nucleotidase/apyrase CLD04_04665 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type CLD04_04665 IPR041827 CpdB, N-terminal metallophosphatase domain CLD04_04665 IPR019931 LPXTG cell wall anchor domain CLD04_04665 IPR029052 Metallo-dependent phosphatase-like CLD04_04665 IPR006146 5'-Nucleotidase, conserved site CLD04_04665 IPR008334 5'-Nucleotidase, C-terminal CLD04_04665 IPR036907 5'-Nucleotidase, C-terminal domain superfamily CLD04_04670 IPR006286 Deglycase PfpI CLD04_04670 IPR029062 Class I glutamine amidotransferase-like CLD04_04670 IPR002818 DJ-1/PfpI CLD04_04675 IPR011701 Major facilitator superfamily CLD04_04675 IPR020846 Major facilitator superfamily domain CLD04_04675 IPR036259 MFS transporter superfamily CLD04_04675 IPR005829 Sugar transporter, conserved site CLD04_04680 IPR009507 Protein of unknown function UPF0435 CLD04_04685 IPR036196 Phosphotyrosine protein phosphatase I superfamily CLD04_04685 IPR023485 Phosphotyrosine protein phosphatase I CLD04_04685 IPR017867 Protein-tyrosine phosphatase, low molecular weight CLD04_04695 IPR017039 Virulence factor BrkB CLD04_04700 IPR036259 MFS transporter superfamily CLD04_04700 IPR011701 Major facilitator superfamily CLD04_04700 IPR020846 Major facilitator superfamily domain CLD04_04705 IPR004837 Sodium/calcium exchanger membrane region CLD04_04705 IPR004798 Calcium/proton exchanger CAX CLD04_04705 IPR004713 Calcium/proton exchanger CLD04_04710 IPR025548 YfkD-like protein CLD04_04715 IPR023408 Mechanosensitive ion channel MscS domain superfamily CLD04_04715 IPR006685 Mechanosensitive ion channel MscS CLD04_04715 IPR010920 LSM domain superfamily CLD04_04715 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 CLD04_04720 IPR013785 Aldolase-type TIM barrel CLD04_04720 IPR031004 Radical SAM/CxCxxxxC motif protein YfkAB CLD04_04720 IPR014866 YfkB-like domain CLD04_04720 IPR007197 Radical SAM CLD04_04730 IPR014235 Peptidoglycan-N-acetylmuramic acid deacetylase PdaA CLD04_04730 IPR002509 NodB homology domain CLD04_04730 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel CLD04_04740 IPR004488 Magnesium/cobalt transport protein CorA CLD04_04740 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB CLD04_04745 IPR011257 DNA glycosylase CLD04_04745 IPR003265 HhH-GPD domain CLD04_04750 IPR002792 TRAM domain CLD04_04750 IPR030390 RNA methyltransferase TrmA, active site CLD04_04750 IPR010280 (Uracil-5)-methyltransferase family CLD04_04750 IPR030391 RNA methyltransferase TrmA, conserved site CLD04_04750 IPR012340 Nucleic acid-binding, OB-fold CLD04_04750 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_04755 IPR025627 YfzA-like protein CLD04_04760 IPR013785 Aldolase-type TIM barrel CLD04_04760 IPR018517 tRNA-dihydrouridine synthase, conserved site CLD04_04760 IPR001269 tRNA-dihydrouridine synthase CLD04_04760 IPR035587 DUS-like, FMN-binding domain CLD04_04775 IPR029061 Thiamin diphosphate-binding fold CLD04_04775 IPR001017 Dehydrogenase, E1 component CLD04_04780 IPR033248 Transketolase, C-terminal domain CLD04_04780 IPR005475 Transketolase-like, pyrimidine-binding domain CLD04_04780 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II CLD04_04780 IPR029061 Thiamin diphosphate-binding fold CLD04_04785 IPR000089 Biotin/lipoyl attachment CLD04_04785 IPR036625 E3-binding domain superfamily CLD04_04785 IPR004167 Peripheral subunit-binding domain CLD04_04785 IPR011053 Single hybrid motif CLD04_04785 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain CLD04_04785 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CLD04_04790 IPR006258 Dihydrolipoamide dehydrogenase CLD04_04790 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I CLD04_04790 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CLD04_04790 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily CLD04_04790 IPR023753 FAD/NAD(P)-binding domain CLD04_04790 IPR036188 FAD/NAD(P)-binding domain superfamily CLD04_04790 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site CLD04_04795 IPR002197 DNA binding HTH domain, Fis-type CLD04_04795 IPR025944 Sigma-54 interaction domain, conserved site CLD04_04795 IPR002078 RNA polymerase sigma factor 54 interaction domain CLD04_04795 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_04795 IPR009057 Homeobox-like domain superfamily CLD04_04795 IPR029016 GAF-like domain superfamily CLD04_04795 IPR003018 GAF domain CLD04_04795 IPR003593 AAA+ ATPase domain CLD04_04800 IPR012610 Small acid-soluble spore protein, SspH CLD04_04805 IPR003844 Uncharacterised protein family UPF0060 CLD04_04810 IPR035324 Protein of unknown function DUF5381 CLD04_04825 IPR036689 ESAT-6-like superfamily CLD04_04825 IPR010310 Type VII secretion system ESAT-6-like CLD04_04830 IPR022616 Glycosyl hydrolase, family 4, C-terminal CLD04_04830 IPR019802 Glycoside hydrolase, family 4, conserved site CLD04_04830 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal CLD04_04830 IPR001088 Glycoside hydrolase, family 4 CLD04_04830 IPR036291 NAD(P)-binding domain superfamily CLD04_04835 IPR001347 Sugar isomerase (SIS) CLD04_04835 IPR000281 Helix-turn-helix protein RpiR CLD04_04835 IPR035472 RpiR-like, SIS domain CLD04_04835 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_04835 IPR009057 Homeobox-like domain superfamily CLD04_04840 IPR001996 Phosphotransferase system, IIB component, type 1 CLD04_04840 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site CLD04_04840 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component CLD04_04840 IPR010975 Phosphotransferase system, alpha-glucoside-specific IIBC component CLD04_04840 IPR036878 Glucose permease domain IIB CLD04_04840 IPR013013 Phosphotransferase system, EIIC component, type 1 CLD04_04840 IPR003352 Phosphotransferase system, EIIC CLD04_04845 IPR011527 ABC transporter type 1, transmembrane domain CLD04_04845 IPR003593 AAA+ ATPase domain CLD04_04845 IPR039421 Type I protein exporter CLD04_04845 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_04845 IPR017871 ABC transporter, conserved site CLD04_04845 IPR003439 ABC transporter-like CLD04_04845 IPR036640 ABC transporter type 1, transmembrane domain superfamily CLD04_04850 IPR011527 ABC transporter type 1, transmembrane domain CLD04_04850 IPR039421 Type I protein exporter CLD04_04850 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_04850 IPR017871 ABC transporter, conserved site CLD04_04850 IPR003439 ABC transporter-like CLD04_04850 IPR003593 AAA+ ATPase domain CLD04_04850 IPR036640 ABC transporter type 1, transmembrane domain superfamily CLD04_04855 IPR032808 DoxX family CLD04_04860 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CLD04_04860 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CLD04_04860 IPR037523 Vicinal oxygen chelate (VOC) domain CLD04_04860 IPR000486 Extradiol ring-cleavage dioxygenase, class I /II CLD04_04865 IPR014710 RmlC-like jelly roll fold CLD04_04865 IPR018062 HTH domain AraC-type, conserved site CLD04_04865 IPR003313 AraC-type arabinose-binding/dimerisation domain CLD04_04865 IPR037923 Transcription regulator HTH-like CLD04_04865 IPR018060 DNA binding HTH domain, AraC-type CLD04_04865 IPR009057 Homeobox-like domain superfamily CLD04_04870 IPR036259 MFS transporter superfamily CLD04_04870 IPR020846 Major facilitator superfamily domain CLD04_04870 IPR005828 Major facilitator, sugar transporter-like CLD04_04870 IPR005829 Sugar transporter, conserved site CLD04_04870 IPR003663 Sugar/inositol transporter CLD04_04875 IPR013022 Xylose isomerase-like, TIM barrel domain CLD04_04875 IPR036237 Xylose isomerase-like superfamily CLD04_04880 IPR036291 NAD(P)-binding domain superfamily CLD04_04880 IPR000683 Oxidoreductase, N-terminal CLD04_04880 IPR004104 Oxidoreductase, C-terminal CLD04_04885 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain CLD04_04885 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_04885 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_04890 IPR000792 Transcription regulator LuxR, C-terminal CLD04_04890 IPR001789 Signal transduction response regulator, receiver domain CLD04_04890 IPR011006 CheY-like superfamily CLD04_04890 IPR016032 Signal transduction response regulator, C-terminal effector CLD04_04900 IPR003439 ABC transporter-like CLD04_04900 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_04900 IPR003593 AAA+ ATPase domain CLD04_04900 IPR017871 ABC transporter, conserved site CLD04_04905 IPR000412 ABC-2 transporter CLD04_04910 IPR000412 ABC-2 transporter CLD04_04920 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_04920 IPR036390 Winged helix DNA-binding domain superfamily CLD04_04920 IPR018309 Transcription regulator PadR, C-terminal CLD04_04920 IPR005149 Transcription regulator PadR, N-terminal CLD04_04925 IPR002918 Lipase EstA/Esterase EstB CLD04_04925 IPR029058 Alpha/Beta hydrolase fold CLD04_04930 IPR002656 Acyltransferase 3 CLD04_04935 IPR023774 Putative metal-dependent hydrolase YfiT CLD04_04935 IPR034660 DinB/YfiT-like putative metalloenzymes CLD04_04935 IPR024775 DinB-like domain CLD04_04940 IPR036259 MFS transporter superfamily CLD04_04940 IPR020846 Major facilitator superfamily domain CLD04_04940 IPR011701 Major facilitator superfamily CLD04_04945 IPR000835 MarR-type HTH domain CLD04_04945 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_04945 IPR036390 Winged helix DNA-binding domain superfamily CLD04_04945 IPR011991 ArsR-like helix-turn-helix domain CLD04_04950 IPR016181 Acyl-CoA N-acyltransferase CLD04_04950 IPR022791 Lysylphosphatidylglycerol synthetase/glycosyltransferase AglD CLD04_04950 IPR024320 Phosphatidylglycerol lysyltransferase, C-terminal CLD04_04955 IPR002491 ABC transporter periplasmic binding domain CLD04_04960 IPR000522 ABC transporter, permease protein, BtuC-like CLD04_04960 IPR037294 ABC transporter, BtuC-like CLD04_04965 IPR037294 ABC transporter, BtuC-like CLD04_04965 IPR000522 ABC transporter, permease protein, BtuC-like CLD04_04970 IPR003719 Phenazine biosynthesis PhzF protein CLD04_04975 IPR026021 Putative NAD(P)H nitroreductase YdjA-like CLD04_04975 IPR000415 Nitroreductase-like CLD04_04975 IPR029479 Nitroreductase CLD04_04980 IPR025435 YfhD-like protein CLD04_04985 IPR025437 YfhE-like protein CLD04_04990 IPR010099 Epimerase family protein SDR39U1 CLD04_04990 IPR036291 NAD(P)-binding domain superfamily CLD04_04990 IPR001509 NAD-dependent epimerase/dehydratase CLD04_04990 IPR013549 Domain of unknown function DUF1731 CLD04_04995 IPR003783 Regulatory protein RecX CLD04_04995 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_05000 IPR014938 Protein of unknown function DUF1811 CLD04_05000 IPR036289 Hypothetical protein YfhH CLD04_05005 IPR036259 MFS transporter superfamily CLD04_05005 IPR011701 Major facilitator superfamily CLD04_05005 IPR020846 Major facilitator superfamily domain CLD04_05010 IPR012611 Small acid-soluble spore protein, SspK CLD04_05015 IPR026952 WVELL protein CLD04_05025 IPR003646 SH3-like domain, bacterial-type CLD04_05030 IPR025962 SdpI/YhfL protein family CLD04_05035 IPR000639 Epoxide hydrolase-like CLD04_05035 IPR029058 Alpha/Beta hydrolase fold CLD04_05035 IPR000073 Alpha/beta hydrolase fold-1 CLD04_05040 IPR029044 Nucleotide-diphospho-sugar transferases CLD04_05040 IPR001173 Glycosyltransferase 2-like CLD04_05045 IPR018580 Uncharacterised protein family YfhO CLD04_05050 IPR007404 LexA-binding, inner membrane-associated putative hydrolase CLD04_05055 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif CLD04_05055 IPR011257 DNA glycosylase CLD04_05055 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal CLD04_05055 IPR005760 A/G-specific adenine glycosylase MutY CLD04_05055 IPR015797 NUDIX hydrolase-like domain superfamily CLD04_05055 IPR029119 MutY, C-terminal CLD04_05055 IPR003265 HhH-GPD domain CLD04_05065 IPR036291 NAD(P)-binding domain superfamily CLD04_05065 IPR002347 Short-chain dehydrogenase/reductase SDR CLD04_05070 IPR006341 Acid-soluble spore protein, gamma-type CLD04_05075 IPR025572 YgaB-like protein CLD04_05080 IPR016882 Uncharacterised protein family UPF0374 CLD04_05080 IPR007295 Domain of unknown function DUF402 CLD04_05080 IPR035930 FomD-like superfamily CLD04_05085 IPR039421 Type I protein exporter CLD04_05085 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_05085 IPR003439 ABC transporter-like CLD04_05085 IPR036640 ABC transporter type 1, transmembrane domain superfamily CLD04_05085 IPR011527 ABC transporter type 1, transmembrane domain CLD04_05085 IPR003593 AAA+ ATPase domain CLD04_05085 IPR017871 ABC transporter, conserved site CLD04_05090 IPR010343 Aromatic acid exporter family member 1 CLD04_05095 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_05095 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase CLD04_05095 IPR005814 Aminotransferase class-III CLD04_05095 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_05095 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_05100 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant CLD04_05100 IPR024706 Peroxiredoxin, AhpC-type CLD04_05100 IPR013766 Thioredoxin domain CLD04_05100 IPR036249 Thioredoxin-like superfamily CLD04_05105 IPR002481 Ferric-uptake regulator CLD04_05105 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_05105 IPR036390 Winged helix DNA-binding domain superfamily CLD04_05110 IPR020912 Uncharacterised protein family UPF0295 CLD04_05115 IPR029348 Nucleotidyltransferase-like domain CLD04_05115 IPR041143 YgxA-like, helix-turn-helix domain CLD04_05220 IPR009776 Sporulation stage 0, protein M CLD04_05220 IPR014752 Arrestin, C-terminal CLD04_05220 IPR014756 Immunoglobulin E-set CLD04_05230 IPR012851 Spore coat protein CotF-like CLD04_05235 IPR029062 Class I glutamine amidotransferase-like CLD04_05235 IPR005320 Peptidase S51 CLD04_05240 IPR002817 Phosphomethylpyrimidine synthase ThiC/5-hydroxybenzimidazole synthase BzaA/B CLD04_05240 IPR038521 ThiC/Bza superfamily CLD04_05240 IPR025747 ThiC-associated domain CLD04_05240 IPR037509 Phosphomethylpyrimidine synthase CLD04_05245 IPR016167 FAD-binding, type PCMH, subdomain 1 CLD04_05245 IPR036318 FAD-binding, type PCMH-like superfamily CLD04_05245 IPR006094 FAD linked oxidase, N-terminal CLD04_05245 IPR016166 FAD-binding domain, PCMH-type CLD04_05245 IPR012951 Berberine/berberine-like CLD04_05250 IPR025004 Transcriptional regulatory protein SenN/SenS CLD04_05255 IPR018028 Catalase, mono-functional, haem-containing CLD04_05255 IPR011614 Catalase core domain CLD04_05255 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 CLD04_05255 IPR020835 Catalase superfamily CLD04_05255 IPR010582 Catalase immune-responsive domain CLD04_05255 IPR002226 Catalase haem-binding site CLD04_05255 IPR037060 Catalase core domain superfamily CLD04_05255 IPR040333 Catalase, clade 3 CLD04_05255 IPR024708 Catalase active site CLD04_05260 IPR017871 ABC transporter, conserved site CLD04_05260 IPR003593 AAA+ ATPase domain CLD04_05260 IPR003439 ABC transporter-like CLD04_05260 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_05260 IPR017875 Aliphatic sulfonates import ATP-binding protein SsuB CLD04_05265 IPR015168 SsuA/THI5-like CLD04_05265 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CLD04_05265 IPR010067 Aliphatic sulfonates-binding protein CLD04_05270 IPR035906 MetI-like superfamily CLD04_05270 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_05275 IPR019911 Alkanesulphonate monooxygenase, FMN-dependent CLD04_05275 IPR036661 Luciferase-like domain superfamily CLD04_05275 IPR011251 Luciferase-like domain CLD04_05285 IPR023036 Ribosomal protein S14, bacterial/plastid CLD04_05285 IPR018271 Ribosomal protein S14, conserved site CLD04_05285 IPR001209 Ribosomal protein S14 CLD04_05295 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLD04_05295 IPR001387 Cro/C1-type helix-turn-helix domain CLD04_05310 IPR004155 PBS lyase HEAT-like repeat CLD04_05310 IPR013542 Domain of unknown function DUF1730 CLD04_05310 IPR004453 Epoxyqueuosine reductase QueG CLD04_05310 IPR011989 Armadillo-like helical CLD04_05310 IPR016024 Armadillo-type fold CLD04_05310 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLD04_05310 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLD04_05315 IPR024301 Putative amidase domain CLD04_05320 IPR016914 tRNA (cytidine/uridine-2'-O-)-methyltransferase CLD04_05320 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CLD04_05320 IPR029028 Alpha/beta knot methyltransferases CLD04_05320 IPR001537 tRNA/rRNA methyltransferase, SpoU type CLD04_05325 IPR025063 Protein of unknown function DUF4004 CLD04_05330 IPR007607 Bactofilin A/B CLD04_05340 IPR016230 Serine-protein kinase, PrkA CLD04_05340 IPR013153 PrkA AAA domain CLD04_05340 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_05340 IPR010650 PrkA C-terminal domain CLD04_05345 IPR006698 Uncharacterised protein family UPF0229 CLD04_05345 IPR014230 Sporulation protein YhbH CLD04_05350 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_05350 IPR000835 MarR-type HTH domain CLD04_05350 IPR036390 Winged helix DNA-binding domain superfamily CLD04_05355 IPR011053 Single hybrid motif CLD04_05360 IPR036259 MFS transporter superfamily CLD04_05360 IPR004638 Drug resistance transporter EmrB-like CLD04_05360 IPR011701 Major facilitator superfamily CLD04_05360 IPR020846 Major facilitator superfamily domain CLD04_05365 IPR005025 NADPH-dependent FMN reductase-like CLD04_05365 IPR008254 Flavodoxin/nitric oxide synthase CLD04_05365 IPR029039 Flavoprotein-like superfamily CLD04_05385 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_05385 IPR036390 Winged helix DNA-binding domain superfamily CLD04_05385 IPR000524 Transcription regulator HTH, GntR CLD04_05390 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_05390 IPR003439 ABC transporter-like CLD04_05390 IPR003593 AAA+ ATPase domain CLD04_05395 IPR017871 ABC transporter, conserved site CLD04_05395 IPR003593 AAA+ ATPase domain CLD04_05395 IPR003439 ABC transporter-like CLD04_05395 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_05400 IPR032688 ABC-2 family transporter protein CLD04_05405 IPR011129 Cold shock domain CLD04_05405 IPR002059 Cold-shock protein, DNA-binding CLD04_05405 IPR012340 Nucleic acid-binding, OB-fold CLD04_05405 IPR012156 Cold shock, CspA CLD04_05405 IPR019844 Cold-shock (CSD) domain CLD04_05415 IPR004872 Lipoprotein NlpA family CLD04_05420 IPR029787 Nucleotide cyclase CLD04_05420 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region CLD04_05420 IPR000160 GGDEF domain CLD04_05425 IPR001991 Sodium:dicarboxylate symporter CLD04_05425 IPR036458 Sodium:dicarboxylate symporter superfamily CLD04_05435 IPR019076 Sporulation lipoprotein YhcN/YlaJ-like CLD04_05435 IPR014247 Sporulation lipoprotein YhcN/YlaJ CLD04_05450 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type CLD04_05450 IPR006179 5'-Nucleotidase/apyrase CLD04_05450 IPR008334 5'-Nucleotidase, C-terminal CLD04_05450 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CLD04_05450 IPR041831 Endonuclease YhcR, metallophosphatase domain CLD04_05450 IPR029052 Metallo-dependent phosphatase-like CLD04_05450 IPR019931 LPXTG cell wall anchor domain CLD04_05450 IPR012340 Nucleic acid-binding, OB-fold CLD04_05450 IPR036907 5'-Nucleotidase, C-terminal domain superfamily CLD04_05450 IPR035437 SNase-like, OB-fold superfamily CLD04_05450 IPR006146 5'-Nucleotidase, conserved site CLD04_05450 IPR019948 Gram-positive LPXTG cell wall anchor CLD04_05455 IPR023365 Sortase domain superfamily CLD04_05455 IPR041999 Sortase D, type 1 CLD04_05455 IPR005754 Sortase family CLD04_05460 IPR006225 Pseudouridine synthase, RluC/RluD CLD04_05460 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site CLD04_05460 IPR020103 Pseudouridine synthase, catalytic domain superfamily CLD04_05460 IPR006145 Pseudouridine synthase, RsuA/RluA CLD04_05460 IPR002942 RNA-binding S4 domain CLD04_05460 IPR036986 RNA-binding S4 domain superfamily CLD04_05465 IPR020355 Uncharacterised protein family YhcU CLD04_05470 IPR000644 CBS domain CLD04_05475 IPR041492 Haloacid dehalogenase-like hydrolase CLD04_05475 IPR006439 HAD hydrolase, subfamily IA CLD04_05475 IPR036412 HAD-like superfamily CLD04_05475 IPR023198 Phosphoglycolate phosphatase-like, domain 2 CLD04_05475 IPR023214 HAD superfamily CLD04_05480 IPR036526 Carbon-nitrogen hydrolase superfamily CLD04_05480 IPR016181 Acyl-CoA N-acyltransferase CLD04_05480 IPR001110 Uncharacterised protein family UPF0012, conserved site CLD04_05480 IPR000182 GNAT domain CLD04_05480 IPR003010 Carbon-nitrogen hydrolase CLD04_05485 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_05485 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_05485 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_05485 IPR005814 Aminotransferase class-III CLD04_05490 IPR006699 Glycerol uptake operon antiterminator CLD04_05490 IPR035928 GlpP-like superfamily CLD04_05495 IPR000425 Major intrinsic protein CLD04_05495 IPR022357 Major intrinsic protein, conserved site CLD04_05495 IPR023271 Aquaporin-like CLD04_05500 IPR005999 Glycerol kinase CLD04_05500 IPR018484 Carbohydrate kinase, FGGY, N-terminal CLD04_05500 IPR018483 Carbohydrate kinase, FGGY, conserved site CLD04_05500 IPR018485 Carbohydrate kinase, FGGY, C-terminal CLD04_05500 IPR000577 Carbohydrate kinase, FGGY CLD04_05505 IPR031656 Alpha-glycerophosphate oxidase, C-terminal CLD04_05505 IPR038299 Alpha-glycerophosphate oxidase, C-terminal domain superfamily CLD04_05505 IPR006076 FAD dependent oxidoreductase CLD04_05505 IPR036188 FAD/NAD(P)-binding domain superfamily CLD04_05505 IPR000447 FAD-dependent glycerol-3-phosphate dehydrogenase CLD04_05510 IPR036900 Alpha-D-phosphohexomutase, C-terminal domain superfamily CLD04_05510 IPR005845 Alpha-D-phosphohexomutase, alpha/beta/alpha domain II CLD04_05510 IPR005841 Alpha-D-phosphohexomutase superfamily CLD04_05510 IPR005843 Alpha-D-phosphohexomutase, C-terminal CLD04_05510 IPR016066 Alpha-D-phosphohexomutase, conserved site CLD04_05510 IPR005844 Alpha-D-phosphohexomutase, alpha/beta/alpha domain I CLD04_05510 IPR005846 Alpha-D-phosphohexomutase, alpha/beta/alpha domain III CLD04_05510 IPR016055 Alpha-D-phosphohexomutase, alpha/beta/alpha I/II/III CLD04_05515 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_05515 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain CLD04_05515 IPR003018 GAF domain CLD04_05515 IPR029016 GAF-like domain superfamily CLD04_05515 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_05520 IPR011006 CheY-like superfamily CLD04_05520 IPR016032 Signal transduction response regulator, C-terminal effector CLD04_05520 IPR001789 Signal transduction response regulator, receiver domain CLD04_05520 IPR000792 Transcription regulator LuxR, C-terminal CLD04_05525 IPR005025 NADPH-dependent FMN reductase-like CLD04_05525 IPR029039 Flavoprotein-like superfamily CLD04_05530 IPR025431 YhdB-like protein CLD04_05535 IPR024987 Protein of unknown function DUF3889 CLD04_05540 IPR036779 LysM domain superfamily CLD04_05540 IPR000064 Endopeptidase, NLPC/P60 domain CLD04_05540 IPR038765 Papain-like cysteine peptidase superfamily CLD04_05540 IPR018392 LysM domain CLD04_05545 IPR036390 Winged helix DNA-binding domain superfamily CLD04_05545 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_05545 IPR000944 Transcription regulator Rrf2-type CLD04_05545 IPR030489 Transcription regulator Rrf2-type, conserved site CLD04_05550 IPR008910 Conserved TM helix CLD04_05555 IPR007390 Sporulation stage V, protein R CLD04_05560 IPR001952 Alkaline phosphatase CLD04_05560 IPR018299 Alkaline phosphatase, active site CLD04_05560 IPR017850 Alkaline-phosphatase-like, core domain superfamily CLD04_05565 IPR000064 Endopeptidase, NLPC/P60 domain CLD04_05565 IPR038765 Papain-like cysteine peptidase superfamily CLD04_05565 IPR018392 LysM domain CLD04_05565 IPR036779 LysM domain superfamily CLD04_05570 IPR000847 Transcription regulator HTH, LysR CLD04_05570 IPR005119 LysR, substrate-binding CLD04_05570 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_05570 IPR036390 Winged helix DNA-binding domain superfamily CLD04_05575 IPR024176 Citrate synthase, bacterial-type CLD04_05575 IPR019810 Citrate synthase active site CLD04_05575 IPR016142 Citrate synthase-like, large alpha subdomain CLD04_05575 IPR002020 Citrate synthase CLD04_05575 IPR036969 Citrate synthase superfamily CLD04_05575 IPR016143 Citrate synthase-like, small alpha subdomain CLD04_05580 IPR020904 Short-chain dehydrogenase/reductase, conserved site CLD04_05580 IPR036291 NAD(P)-binding domain superfamily CLD04_05580 IPR002347 Short-chain dehydrogenase/reductase SDR CLD04_05585 IPR004758 Amino acid transporter CLD04_05585 IPR002293 Amino acid/polyamine transporter I CLD04_05590 IPR000175 Sodium:neurotransmitter symporter CLD04_05590 IPR037272 Sodium:neurotransmitter symporter superfamily CLD04_05595 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_05595 IPR000524 Transcription regulator HTH, GntR CLD04_05595 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_05595 IPR036390 Winged helix DNA-binding domain superfamily CLD04_05595 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_05595 IPR004839 Aminotransferase, class I/classII CLD04_05600 IPR000182 GNAT domain CLD04_05600 IPR016181 Acyl-CoA N-acyltransferase CLD04_05605 IPR020496 Sigma-M inhibitor YhdK CLD04_05610 IPR029101 Sigma factor regulator, N-terminal CLD04_05610 IPR025672 Sigma factor regulator C-terminal domain CLD04_05615 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site CLD04_05615 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_05615 IPR013325 RNA polymerase sigma factor, region 2 CLD04_05615 IPR014296 RNA polymerase sigma-M, bacillaceae CLD04_05615 IPR014284 RNA polymerase sigma-70 like domain CLD04_05615 IPR039425 RNA polymerase sigma-70 like CLD04_05615 IPR007627 RNA polymerase sigma-70 region 2 CLD04_05615 IPR013324 RNA polymerase sigma factor, region 3/4-like CLD04_05615 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 CLD04_05620 IPR020471 Aldo/keto reductase CLD04_05620 IPR023210 NADP-dependent oxidoreductase domain CLD04_05620 IPR036812 NADP-dependent oxidoreductase domain superfamily CLD04_05620 IPR018170 Aldo/keto reductase, conserved site CLD04_05625 IPR004552 1-acyl-sn-glycerol-3-phosphate acyltransferase CLD04_05625 IPR002123 Phospholipid/glycerol acyltransferase CLD04_05635 IPR036318 FAD-binding, type PCMH-like superfamily CLD04_05635 IPR002550 CNNM, transmembrane domain CLD04_05635 IPR016169 FAD-binding, type PCMH, subdomain 2 CLD04_05635 IPR005170 Transporter-associated domain CLD04_05635 IPR000644 CBS domain CLD04_05640 IPR009061 Putative DNA-binding domain superfamily CLD04_05640 IPR000551 MerR-type HTH domain CLD04_05645 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_05645 IPR004839 Aminotransferase, class I/classII CLD04_05645 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_05645 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site CLD04_05645 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_05650 IPR002550 CNNM, transmembrane domain CLD04_05650 IPR000644 CBS domain CLD04_05650 IPR005170 Transporter-associated domain CLD04_05650 IPR016169 FAD-binding, type PCMH, subdomain 2 CLD04_05650 IPR036318 FAD-binding, type PCMH-like superfamily CLD04_05655 IPR003691 Putative fluoride ion transporter CrcB CLD04_05660 IPR003691 Putative fluoride ion transporter CrcB CLD04_05665 IPR030395 Glycerophosphodiester phosphodiesterase domain CLD04_05665 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily CLD04_05670 IPR035384 Uncharacterized protein YhdX-like CLD04_05675 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 CLD04_05675 IPR006686 Mechanosensitive ion channel MscS, conserved site CLD04_05675 IPR006685 Mechanosensitive ion channel MscS CLD04_05675 IPR023408 Mechanosensitive ion channel MscS domain superfamily CLD04_05675 IPR011066 Mechanosensitive ion channel MscS, C-terminal CLD04_05675 IPR010920 LSM domain superfamily CLD04_05680 IPR028628 Sirtuin, class U CLD04_05680 IPR026590 Sirtuin family, catalytic core domain CLD04_05680 IPR003000 Sirtuin family CLD04_05680 IPR029035 DHS-like NAD/FAD-binding domain superfamily CLD04_05680 IPR026591 Sirtuin, catalytic core small domain superfamily CLD04_05685 IPR002509 NodB homology domain CLD04_05685 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel CLD04_05690 IPR036038 Aminotransferase-like, PLP-dependent enzymes CLD04_05690 IPR001544 Aminotransferase class IV CLD04_05690 IPR018300 Aminotransferase, class IV, conserved site CLD04_05690 IPR005784 D-amino acid aminotransferase CLD04_05695 IPR004770 Na+/H+ antiporter NhaC CLD04_05695 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal CLD04_05700 IPR006016 UspA CLD04_05700 IPR006015 Universal stress protein A family CLD04_05700 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLD04_05710 IPR003593 AAA+ ATPase domain CLD04_05710 IPR036640 ABC transporter type 1, transmembrane domain superfamily CLD04_05710 IPR011527 ABC transporter type 1, transmembrane domain CLD04_05710 IPR039421 Type I protein exporter CLD04_05710 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_05710 IPR017871 ABC transporter, conserved site CLD04_05710 IPR003439 ABC transporter-like CLD04_05715 IPR039421 Type I protein exporter CLD04_05715 IPR017871 ABC transporter, conserved site CLD04_05715 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_05715 IPR003439 ABC transporter-like CLD04_05715 IPR003593 AAA+ ATPase domain CLD04_05715 IPR011527 ABC transporter type 1, transmembrane domain CLD04_05715 IPR036640 ABC transporter type 1, transmembrane domain superfamily CLD04_05720 IPR036291 NAD(P)-binding domain superfamily CLD04_05720 IPR016040 NAD(P)-binding domain CLD04_05730 IPR038300 SASP, alpha/beta-type superfamily CLD04_05730 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site CLD04_05730 IPR001448 Small acid-soluble spore protein, alpha/beta-type CLD04_05735 IPR017263 Uncharacterised conserved protein UCP037692 CLD04_05740 IPR026838 Endospore coat-associated protein YheC/D CLD04_05745 IPR026838 Endospore coat-associated protein YheC/D CLD04_05745 IPR013815 ATP-grasp fold, subdomain 1 CLD04_05750 IPR007383 Protein of unknown function DUF445 CLD04_05750 IPR016991 Protein of unknown function UCP032178 CLD04_05755 IPR010368 Control of competence regulator ComK, YlbF/YmcA CLD04_05755 IPR023378 YheA/YmcA-like domain superfamily CLD04_05765 IPR000150 Cof family CLD04_05765 IPR036412 HAD-like superfamily CLD04_05765 IPR006379 HAD-superfamily hydrolase, subfamily IIB CLD04_05765 IPR023214 HAD superfamily CLD04_05770 IPR034505 Anaerobic coproporphyrinogen-III oxidase CLD04_05770 IPR006638 Elp3/MiaB/NifB CLD04_05770 IPR023995 Oxygen-independent coproporphyrinogen-III oxidase-like protein HemZ CLD04_05770 IPR023404 Radical SAM, alpha/beta horseshoe CLD04_05770 IPR007197 Radical SAM CLD04_05775 IPR038770 Sodium/solute symporter superfamily CLD04_05775 IPR006153 Cation/H+ exchanger CLD04_05780 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily CLD04_05780 IPR006037 Regulator of K+ conductance, C-terminal CLD04_05780 IPR026278 Potassium/proton antiporter subunit KhtT CLD04_05790 IPR029045 ClpP/crotonase-like domain superfamily CLD04_05790 IPR001753 Enoyl-CoA hydratase/isomerase CLD04_05790 IPR014748 Enoyl-CoA hydratase, C-terminal CLD04_05795 IPR025544 YhzD-like protein CLD04_05800 IPR003593 AAA+ ATPase domain CLD04_05800 IPR017871 ABC transporter, conserved site CLD04_05800 IPR003439 ABC transporter-like CLD04_05800 IPR025302 Domain of unknown function DUF4162 CLD04_05800 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_05810 IPR014576 Predicted phosphoesterase, YhaO type CLD04_05810 IPR041796 Mre11 nuclease, N-terminal metallophosphatase domain CLD04_05810 IPR029052 Metallo-dependent phosphatase-like CLD04_05810 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type CLD04_05815 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_05815 IPR038734 Uncharacterized protein YhaN, AAA domain CLD04_05820 IPR006674 HD domain CLD04_05820 IPR020873 3'-5' exoribonuclease YhaM CLD04_05820 IPR003607 HD/PDEase domain CLD04_05820 IPR012340 Nucleic acid-binding, OB-fold CLD04_05825 IPR025428 Sporulation protein YhaL CLD04_05830 IPR027304 Trigger factor/SurA domain superfamily CLD04_05830 IPR000297 Peptidyl-prolyl cis-trans isomerase, PpiC-type CLD04_05830 IPR023059 Foldase protein PrsA CLD04_05830 IPR023058 Peptidyl-prolyl cis-trans isomerase, PpiC-type, conserved site CLD04_05835 IPR010070 Sporulation protein YjcZ-like CLD04_05840 IPR010070 Sporulation protein YjcZ-like CLD04_05850 IPR021683 Putative zincin peptidase CLD04_05855 IPR035945 YhaI-like superfamily CLD04_05855 IPR015058 Protein of unknown function DUF1878 CLD04_05860 IPR000835 MarR-type HTH domain CLD04_05860 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_05860 IPR036390 Winged helix DNA-binding domain superfamily CLD04_05860 IPR023187 Transcriptional regulator MarR-type, conserved site CLD04_05860 IPR023488 HTH-type transcriptional regulator Hpr CLD04_05865 IPR036191 RRF superfamily CLD04_05865 IPR024623 Uncharacterised protein family YtxH CLD04_05875 IPR031360 Tryptophan transporter TrpP CLD04_05880 IPR000192 Aminotransferase class V domain CLD04_05880 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_05880 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_05880 IPR022278 Phosphoserine aminotransferase CLD04_05880 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_05880 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site CLD04_05885 IPR039384 HINT family CLD04_05885 IPR019808 Histidine triad, conserved site CLD04_05885 IPR001310 Histidine triad (HIT) protein CLD04_05885 IPR011146 HIT-like domain CLD04_05885 IPR036265 HIT-like superfamily CLD04_05890 IPR003593 AAA+ ATPase domain CLD04_05890 IPR003439 ABC transporter-like CLD04_05890 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_05895 IPR010288 Bacterial ABC transporter EcsB CLD04_05900 IPR024787 EcsC protein CLD04_05905 IPR011650 Peptidase M20, dimerisation domain CLD04_05905 IPR036264 Bacterial exopeptidase dimerisation domain CLD04_05905 IPR017439 Amidohydrolase CLD04_05905 IPR002933 Peptidase M20 CLD04_05920 IPR011008 Dimeric alpha-beta barrel CLD04_05920 IPR007138 Antibiotic biosynthesis monooxygenase domain CLD04_05925 IPR001264 Glycosyl transferase, family 51 CLD04_05925 IPR001460 Penicillin-binding protein, transpeptidase CLD04_05925 IPR036950 Penicillin binding protein transglycosylase domain CLD04_05925 IPR023346 Lysozyme-like domain superfamily CLD04_05925 IPR012338 Beta-lactamase/transpeptidase-like CLD04_05930 IPR000257 Uroporphyrinogen decarboxylase (URO-D) CLD04_05930 IPR038071 UROD/MetE-like superfamily CLD04_05930 IPR006361 Uroporphyrinogen decarboxylase HemE CLD04_05945 IPR001647 DNA-binding HTH domain, TetR-type CLD04_05945 IPR023772 DNA-binding HTH domain, TetR-type, conserved site CLD04_05945 IPR041490 HTH-type transcriptional repressor KstR2, C-terminal CLD04_05945 IPR009057 Homeobox-like domain superfamily CLD04_05945 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CLD04_05950 IPR017500 Phage infection protein, YhgE, N-terminal CLD04_05950 IPR023908 xxxLxxG heptad repeat CLD04_05950 IPR017501 Phage infection protein, YhgE, C-terminal CLD04_05955 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 CLD04_05955 IPR016039 Thiolase-like CLD04_05955 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal CLD04_05955 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CLD04_05960 IPR011397 Intramembrane metalloprotease YhfC CLD04_05970 IPR023367 Peptidase M42, domain 2 CLD04_05970 IPR008007 Peptidase M42 CLD04_05975 IPR007374 ASCH domain CLD04_05975 IPR015947 PUA-like superfamily CLD04_05975 IPR009326 Protein of unknown function DUF984 CLD04_05980 IPR033380 Glutamate-aspartate symport protein GltP/GltT CLD04_05980 IPR036458 Sodium:dicarboxylate symporter superfamily CLD04_05980 IPR001991 Sodium:dicarboxylate symporter CLD04_05980 IPR018107 Sodium:dicarboxylate symporter, conserved site CLD04_05985 IPR025432 YhfH-like protein CLD04_05990 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLD04_05990 IPR001279 Metallo-beta-lactamase CLD04_05995 IPR004562 Lipoyltransferase/lipoate-protein ligase CLD04_05995 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain CLD04_05995 IPR019491 Lipoate protein ligase, C-terminal CLD04_06000 IPR036291 NAD(P)-binding domain superfamily CLD04_06000 IPR016040 NAD(P)-binding domain CLD04_06005 IPR020459 AMP-binding CLD04_06005 IPR000873 AMP-dependent synthetase/ligase CLD04_06005 IPR042099 AMP-dependent synthetase-like superfamily CLD04_06005 IPR025110 AMP-binding enzyme, C-terminal domain CLD04_06005 IPR020845 AMP-binding, conserved site CLD04_06015 IPR032456 CAAX prenyl protease 1, N-terminal CLD04_06015 IPR027057 CAAX prenyl protease 1 CLD04_06015 IPR001915 Peptidase M48 CLD04_06020 IPR037045 Peptidase S8 propeptide/proteinase inhibitor I9 superfamily CLD04_06020 IPR023828 Peptidase S8, subtilisin, Ser-active site CLD04_06020 IPR015500 Peptidase S8, subtilisin-related CLD04_06020 IPR010259 Peptidase S8 propeptide/proteinase inhibitor I9 CLD04_06020 IPR022398 Peptidase S8, subtilisin, His-active site CLD04_06020 IPR023827 Peptidase S8, subtilisin, Asp-active site CLD04_06020 IPR036852 Peptidase S8/S53 domain superfamily CLD04_06020 IPR000209 Peptidase S8/S53 domain CLD04_06020 IPR034202 Subtilisin Carlsberg-like catalytic domain CLD04_06025 IPR000182 GNAT domain CLD04_06025 IPR016181 Acyl-CoA N-acyltransferase CLD04_06030 IPR014188 Acrylyl-CoA reductase AcuI CLD04_06030 IPR020843 Polyketide synthase, enoylreductase domain CLD04_06030 IPR011032 GroES-like superfamily CLD04_06030 IPR036291 NAD(P)-binding domain superfamily CLD04_06030 IPR013149 Alcohol dehydrogenase, C-terminal CLD04_06030 IPR013154 Alcohol dehydrogenase, N-terminal CLD04_06035 IPR002491 ABC transporter periplasmic binding domain CLD04_06040 IPR029033 Histidine phosphatase superfamily CLD04_06040 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site CLD04_06040 IPR013078 Histidine phosphatase superfamily, clade-1 CLD04_06045 IPR020616 Thiolase, N-terminal CLD04_06045 IPR020617 Thiolase, C-terminal CLD04_06045 IPR020613 Thiolase, conserved site CLD04_06045 IPR002155 Thiolase CLD04_06045 IPR016039 Thiolase-like CLD04_06050 IPR042099 AMP-dependent synthetase-like superfamily CLD04_06050 IPR000873 AMP-dependent synthetase/ligase CLD04_06050 IPR020845 AMP-binding, conserved site CLD04_06050 IPR025110 AMP-binding enzyme, C-terminal domain CLD04_06055 IPR003784 BioY protein CLD04_06060 IPR039379 Protoglobin, globin sensor domain CLD04_06060 IPR009050 Globin-like superfamily CLD04_06060 IPR012292 Globin/Protoglobin CLD04_06060 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLD04_06070 IPR036291 NAD(P)-binding domain superfamily CLD04_06070 IPR020904 Short-chain dehydrogenase/reductase, conserved site CLD04_06070 IPR002347 Short-chain dehydrogenase/reductase SDR CLD04_06075 IPR014957 IDEAL domain CLD04_06075 IPR027393 Virus scaffolding protein, C-terminal CLD04_06080 IPR010461 Competence protein ComK CLD04_06085 IPR020904 Short-chain dehydrogenase/reductase, conserved site CLD04_06085 IPR002347 Short-chain dehydrogenase/reductase SDR CLD04_06085 IPR036291 NAD(P)-binding domain superfamily CLD04_06090 IPR008613 Excalibur calcium-binding domain CLD04_06095 IPR001734 Sodium/solute symporter CLD04_06095 IPR038377 Sodium/glucose symporter superfamily CLD04_06100 IPR021741 Protein of unknown function DUF3311 CLD04_06110 IPR015414 Transmembrane protein TMEM64 CLD04_06110 IPR032816 SNARE associated Golgi protein CLD04_06115 IPR019756 Peptidase S26A, signal peptidase I, serine active site CLD04_06115 IPR019758 Peptidase S26A, signal peptidase I, conserved site CLD04_06115 IPR000223 Peptidase S26A, signal peptidase I CLD04_06115 IPR019757 Peptidase S26A, signal peptidase I, lysine active site CLD04_06115 IPR036286 LexA/Signal peptidase-like superfamily CLD04_06115 IPR019533 Peptidase S26 CLD04_06120 IPR036188 FAD/NAD(P)-binding domain superfamily CLD04_06120 IPR002938 FAD-binding domain CLD04_06125 IPR000835 MarR-type HTH domain CLD04_06125 IPR036390 Winged helix DNA-binding domain superfamily CLD04_06125 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_06125 IPR023187 Transcriptional regulator MarR-type, conserved site CLD04_06130 IPR036259 MFS transporter superfamily CLD04_06130 IPR020846 Major facilitator superfamily domain CLD04_06130 IPR011701 Major facilitator superfamily CLD04_06140 IPR006380 Sucrose-phosphatase-like, N-terminal CLD04_06140 IPR023214 HAD superfamily CLD04_06140 IPR006379 HAD-superfamily hydrolase, subfamily IIB CLD04_06140 IPR036412 HAD-like superfamily CLD04_06150 IPR000843 LacI-type HTH domain CLD04_06150 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLD04_06150 IPR028082 Periplasmic binding protein-like I CLD04_06155 IPR017516 AbrB duplication CLD04_06155 IPR007820 AbrB family CLD04_06160 IPR020846 Major facilitator superfamily domain CLD04_06160 IPR036259 MFS transporter superfamily CLD04_06160 IPR011701 Major facilitator superfamily CLD04_06165 IPR025370 Transcriptional regulator SgrR, N-terminal HTH domain CLD04_06165 IPR039424 Solute-binding protein family 5 CLD04_06165 IPR000914 Solute-binding protein family 5 domain CLD04_06170 IPR005560 Protein of unknown function DUF326 CLD04_06175 IPR003251 Rubrerythrin CLD04_06175 IPR009078 Ferritin-like superfamily CLD04_06180 IPR014017 UvrD-like DNA helicase, C-terminal CLD04_06180 IPR014016 UvrD-like helicase, ATP-binding domain CLD04_06180 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_06180 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type CLD04_06180 IPR000212 DNA helicase, UvrD/REP type CLD04_06180 IPR014140 DNA helicase subunit AddB CLD04_06185 IPR011335 Restriction endonuclease type II-like CLD04_06185 IPR000212 DNA helicase, UvrD/REP type CLD04_06185 IPR014152 DNA helicase subunit AddA CLD04_06185 IPR011604 Exonuclease, phage-type/RecB, C-terminal CLD04_06185 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_06185 IPR038726 PD-(D/E)XK endonuclease-like domain, AddAB-type CLD04_06185 IPR034739 UvrD/AddA helicase, N-terminal CLD04_06185 IPR014016 UvrD-like helicase, ATP-binding domain CLD04_06185 IPR014017 UvrD-like DNA helicase, C-terminal CLD04_06190 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type CLD04_06190 IPR041796 Mre11 nuclease, N-terminal metallophosphatase domain CLD04_06190 IPR004593 Nuclease SbcCD subunit D CLD04_06190 IPR026843 Nuclease SbcCD subunit D, C-terminal domain CLD04_06190 IPR029052 Metallo-dependent phosphatase-like CLD04_06195 IPR038729 Rad50/SbcC-type AAA domain CLD04_06195 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_06205 IPR019618 Spore germination protein GerPA/GerPF CLD04_06210 IPR024496 Spore germination protein GerPE CLD04_06215 IPR017257 Spore germination protein GerPD, predicted CLD04_06220 IPR019673 Spore germination protein GerPC CLD04_06225 IPR024255 Spore germination GerPB CLD04_06230 IPR019618 Spore germination protein GerPA/GerPF CLD04_06235 IPR018540 Aspartyl-phosphate phosphatase Spo0E-like CLD04_06235 IPR037208 Aspartyl-phosphate phosphatase Spo0E-like superfamily CLD04_06240 IPR014867 Spore coat protein CotH CLD04_06245 IPR036663 Fumarylacetoacetase-like, C-terminal domain superfamily CLD04_06245 IPR011234 Fumarylacetoacetase-like, C-terminal CLD04_06250 IPR010899 Protein of unknown function UPF0344 CLD04_06255 IPR000209 Peptidase S8/S53 domain CLD04_06255 IPR013783 Immunoglobulin-like fold CLD04_06255 IPR041498 Bacterial Ig domain CLD04_06255 IPR023828 Peptidase S8, subtilisin, Ser-active site CLD04_06255 IPR015500 Peptidase S8, subtilisin-related CLD04_06255 IPR036852 Peptidase S8/S53 domain superfamily CLD04_06255 IPR022398 Peptidase S8, subtilisin, His-active site CLD04_06255 IPR034084 Thermitase-like, domain CLD04_06260 IPR024488 Protein of unknown function DUF2777 CLD04_06265 IPR006426 Asparagine synthase, glutamine-hydrolyzing CLD04_06265 IPR033738 Asparagine synthase, N-terminal domain CLD04_06265 IPR001962 Asparagine synthase CLD04_06265 IPR029055 Nucleophile aminohydrolases, N-terminal CLD04_06265 IPR017932 Glutamine amidotransferase type 2 domain CLD04_06270 IPR034660 DinB/YfiT-like putative metalloenzymes CLD04_06270 IPR007837 DNA damage-inducible protein DinB CLD04_06275 IPR008949 Isoprenoid synthase domain superfamily CLD04_06280 IPR002528 Multi antimicrobial extrusion protein CLD04_06285 IPR009057 Homeobox-like domain superfamily CLD04_06285 IPR037923 Transcription regulator HTH-like CLD04_06285 IPR018060 DNA binding HTH domain, AraC-type CLD04_06285 IPR018062 HTH domain AraC-type, conserved site CLD04_06285 IPR003313 AraC-type arabinose-binding/dimerisation domain CLD04_06290 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLD04_06290 IPR028082 Periplasmic binding protein-like I CLD04_06290 IPR000843 LacI-type HTH domain CLD04_06295 IPR004104 Oxidoreductase, C-terminal CLD04_06295 IPR036291 NAD(P)-binding domain superfamily CLD04_06295 IPR000683 Oxidoreductase, N-terminal CLD04_06300 IPR034660 DinB/YfiT-like putative metalloenzymes CLD04_06300 IPR007837 DNA damage-inducible protein DinB CLD04_06305 IPR001123 Amino acid exporter protein, LeuE-type CLD04_06310 IPR004839 Aminotransferase, class I/classII CLD04_06310 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_06310 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_06310 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_06310 IPR036390 Winged helix DNA-binding domain superfamily CLD04_06310 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_06310 IPR000524 Transcription regulator HTH, GntR CLD04_06315 IPR001646 Pentapeptide repeat CLD04_06320 IPR000073 Alpha/beta hydrolase fold-1 CLD04_06320 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal CLD04_06320 IPR029058 Alpha/Beta hydrolase fold CLD04_06320 IPR000639 Epoxide hydrolase-like CLD04_06325 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_06325 IPR002891 Adenylyl-sulfate kinase CLD04_06340 IPR005238 ComB-like CLD04_06340 IPR036702 ComB-like superfamily CLD04_06345 IPR013785 Aldolase-type TIM barrel CLD04_06345 IPR003830 (2R)-phospho-3-sulpholactate synthase, ComA CLD04_06345 IPR036112 (2R)-phospho-3-sulpholactate synthase, ComA superfamily CLD04_06350 IPR003740 Uncharacterised membrane protein YitT CLD04_06355 IPR029017 Enolase-like, N-terminal CLD04_06355 IPR029065 Enolase C-terminal domain-like CLD04_06355 IPR036849 Enolase-like, C-terminal domain superfamily CLD04_06355 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal CLD04_06355 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain CLD04_06360 IPR002513 Tn3 transposase DDE domain CLD04_06360 IPR025296 Domain of unknown function DUF4158 CLD04_06415 IPR014204 Sporulation stage V, protein AE CLD04_06415 IPR005562 SpoVA CLD04_06445 IPR020846 Major facilitator superfamily domain CLD04_06445 IPR011701 Major facilitator superfamily CLD04_06445 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG CLD04_06445 IPR036259 MFS transporter superfamily CLD04_06450 IPR016181 Acyl-CoA N-acyltransferase CLD04_06450 IPR000182 GNAT domain CLD04_06450 IPR041496 YitH, acetyltransferase (GNAT) domain CLD04_06455 IPR016181 Acyl-CoA N-acyltransferase CLD04_06455 IPR000182 GNAT domain CLD04_06455 IPR039143 Glucosamine 6-phosphate N-acetyltransferase CLD04_06460 IPR036589 Homocysteine-binding domain superfamily CLD04_06460 IPR003171 Methylenetetrahydrofolate reductase CLD04_06460 IPR003726 Homocysteine-binding domain CLD04_06460 IPR029041 FAD-linked oxidoreductase-like CLD04_06465 IPR035571 UPF0234-like, C-terminal CLD04_06465 IPR036183 YajQ-like superfamily CLD04_06465 IPR035570 UPF0234, N-terminal CLD04_06465 IPR007551 Protein of unknown function DUF520 CLD04_06470 IPR012340 Nucleic acid-binding, OB-fold CLD04_06470 IPR022967 RNA-binding domain, S1 CLD04_06470 IPR003029 S1 domain CLD04_06470 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_06470 IPR014464 Conserved virulence factor B CLD04_06470 IPR040764 Conserved virulence factor B-like, winged helix domain CLD04_06470 IPR039566 Conserved virulence factor B, S1 domain CLD04_06475 IPR023888 Antimicrobial peptide, SdpC family CLD04_06480 IPR011020 HTTM CLD04_06480 IPR023894 Sporulation delaying protein SdpB CLD04_06485 IPR023902 Sporulation delaying protein SdpA CLD04_06490 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_06490 IPR005149 Transcription regulator PadR, N-terminal CLD04_06490 IPR036390 Winged helix DNA-binding domain superfamily CLD04_06500 IPR017259 Uncharacterised conserved protein UCP037672 CLD04_06505 IPR011096 FTP domain CLD04_06505 IPR025711 PepSY domain CLD04_06505 IPR023612 Peptidase M4 CLD04_06505 IPR027268 Peptidase M4/M1, CTD superfamily CLD04_06505 IPR001570 Peptidase M4, C-terminal CLD04_06505 IPR013856 Peptidase M4 domain CLD04_06510 IPR003797 DegV CLD04_06515 IPR003740 Uncharacterised membrane protein YitT CLD04_06515 IPR019264 Domain of unknown function DUF2179 CLD04_06515 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CLD04_06520 IPR020481 Intracellular proteinase inhibitor BsuPI CLD04_06520 IPR038144 Intracellular proteinase inhibitor CLD04_06525 IPR024217 Protein of unknown function DUF3813 CLD04_06530 IPR000150 Cof family CLD04_06530 IPR036412 HAD-like superfamily CLD04_06530 IPR006379 HAD-superfamily hydrolase, subfamily IIB CLD04_06530 IPR023214 HAD superfamily CLD04_06535 IPR029058 Alpha/Beta hydrolase fold CLD04_06535 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain CLD04_06540 IPR002744 MIP18 family-like CLD04_06540 IPR034904 Fe-S cluster assembly domain superfamily CLD04_06550 IPR036318 FAD-binding, type PCMH-like superfamily CLD04_06550 IPR006094 FAD linked oxidase, N-terminal CLD04_06550 IPR016164 FAD-linked oxidase-like, C-terminal CLD04_06550 IPR016169 FAD-binding, type PCMH, subdomain 2 CLD04_06550 IPR016166 FAD-binding domain, PCMH-type CLD04_06555 IPR011701 Major facilitator superfamily CLD04_06555 IPR020846 Major facilitator superfamily domain CLD04_06555 IPR036259 MFS transporter superfamily CLD04_06560 IPR036291 NAD(P)-binding domain superfamily CLD04_06560 IPR012280 Semialdehyde dehydrogenase, dimerisation domain CLD04_06560 IPR000534 Semialdehyde dehydrogenase, NAD-binding CLD04_06560 IPR023013 N-acetyl-gamma-glutamyl-phosphate reductase, active site CLD04_06560 IPR000706 N-acetyl-gamma-glutamyl-phosphate reductase, type 1 CLD04_06565 IPR002813 Arginine biosynthesis protein ArgJ CLD04_06565 IPR016117 ArgJ-like domain superfamily CLD04_06565 IPR042195 ArgJ beta chain, C-terminal domain CLD04_06570 IPR001048 Aspartate/glutamate/uridylate kinase CLD04_06570 IPR037528 Acetylglutamate kinase ArgB CLD04_06570 IPR004662 Acetylglutamate kinase family CLD04_06570 IPR036393 Acetylglutamate kinase-like superfamily CLD04_06570 IPR001057 Glutamate/acetylglutamate kinase CLD04_06575 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_06575 IPR004636 Acetylornithine/Succinylornithine transaminase family CLD04_06575 IPR005814 Aminotransferase class-III CLD04_06575 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_06575 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_06580 IPR035686 Carbamoyl-phosphate synthase small subunit, GATase1 domain CLD04_06580 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily CLD04_06580 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain CLD04_06580 IPR006274 Carbamoyl-phosphate synthase, small subunit CLD04_06580 IPR029062 Class I glutamine amidotransferase-like CLD04_06580 IPR017926 Glutamine amidotransferase CLD04_06585 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily CLD04_06585 IPR011761 ATP-grasp fold CLD04_06585 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain CLD04_06585 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain CLD04_06585 IPR013815 ATP-grasp fold, subdomain 1 CLD04_06585 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain CLD04_06585 IPR006275 Carbamoyl-phosphate synthase, large subunit CLD04_06585 IPR016185 Pre-ATP-grasp domain superfamily CLD04_06585 IPR011607 Methylglyoxal synthase-like domain CLD04_06590 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding CLD04_06590 IPR006130 Aspartate/ornithine carbamoyltransferase CLD04_06590 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily CLD04_06590 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain CLD04_06590 IPR002292 Ornithine/putrescine carbamoyltransferase CLD04_06590 IPR024904 Ornithine carbamoyltransferase CLD04_06595 IPR025549 YjzC-like protein CLD04_06600 IPR021324 Protein of unknown function DUF2929 CLD04_06605 IPR029058 Alpha/Beta hydrolase fold CLD04_06615 IPR003760 ABC transporter substrate-binding protein PnrA-like CLD04_06615 IPR028082 Periplasmic binding protein-like I CLD04_06620 IPR024558 ComZ CLD04_06630 IPR013751 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CLD04_06630 IPR013747 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III, C-terminal CLD04_06630 IPR004655 3-oxoacyl-[acyl-carrier-protein] synthase 3 CLD04_06630 IPR016039 Thiolase-like CLD04_06635 IPR016039 Thiolase-like CLD04_06635 IPR014030 Beta-ketoacyl synthase, N-terminal CLD04_06635 IPR014031 Beta-ketoacyl synthase, C-terminal CLD04_06635 IPR018201 Beta-ketoacyl synthase, active site CLD04_06635 IPR000794 Beta-ketoacyl synthase CLD04_06635 IPR017568 3-oxoacyl-[acyl-carrier-protein] synthase 2 CLD04_06635 IPR020841 Polyketide synthase, beta-ketoacyl synthase domain CLD04_06640 IPR018728 Domain of unknown function DUF2268 CLD04_06645 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_06645 IPR003439 ABC transporter-like CLD04_06645 IPR003593 AAA+ ATPase domain CLD04_06645 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal CLD04_06645 IPR017871 ABC transporter, conserved site CLD04_06650 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal CLD04_06650 IPR017871 ABC transporter, conserved site CLD04_06650 IPR003439 ABC transporter-like CLD04_06650 IPR003593 AAA+ ATPase domain CLD04_06650 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_06655 IPR030678 Peptide/nickel binding protein, MppA-type CLD04_06655 IPR039424 Solute-binding protein family 5 CLD04_06655 IPR023765 Solute-binding protein family 5, conserved site CLD04_06655 IPR000914 Solute-binding protein family 5 domain CLD04_06660 IPR035906 MetI-like superfamily CLD04_06660 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_06665 IPR035906 MetI-like superfamily CLD04_06665 IPR025966 Oligopeptide transport permease C-like, N-terminal domain CLD04_06665 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_06670 IPR020909 UPF0736 CLD04_06675 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLD04_06675 IPR002305 Aminoacyl-tRNA synthetase, class Ic CLD04_06675 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CLD04_06675 IPR002306 Tryptophan-tRNA ligase CLD04_06675 IPR024109 Tryptophan-tRNA ligase, bacterial-type CLD04_06680 IPR023765 Solute-binding protein family 5, conserved site CLD04_06680 IPR039424 Solute-binding protein family 5 CLD04_06680 IPR000914 Solute-binding protein family 5 domain CLD04_06680 IPR030678 Peptide/nickel binding protein, MppA-type CLD04_06685 IPR035906 MetI-like superfamily CLD04_06685 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_06690 IPR035906 MetI-like superfamily CLD04_06690 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_06690 IPR025966 Oligopeptide transport permease C-like, N-terminal domain CLD04_06695 IPR003593 AAA+ ATPase domain CLD04_06695 IPR003439 ABC transporter-like CLD04_06695 IPR017871 ABC transporter, conserved site CLD04_06695 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal CLD04_06695 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_06700 IPR003593 AAA+ ATPase domain CLD04_06700 IPR003439 ABC transporter-like CLD04_06700 IPR017871 ABC transporter, conserved site CLD04_06700 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_06700 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal CLD04_06705 IPR011701 Major facilitator superfamily CLD04_06705 IPR036259 MFS transporter superfamily CLD04_06710 IPR016181 Acyl-CoA N-acyltransferase CLD04_06710 IPR000182 GNAT domain CLD04_06715 IPR006660 Arsenate reductase-like CLD04_06715 IPR023731 Regulatory protein Spx CLD04_06715 IPR036249 Thioredoxin-like superfamily CLD04_06715 IPR006504 Transcriptional regulator Spx/MgsR CLD04_06720 IPR022301 Integral membrane protein YjbE CLD04_06720 IPR005496 Integral membrane protein TerC CLD04_06725 IPR038471 MecA, C-terminal domain superfamily CLD04_06725 IPR008681 Negative regulator of genetic competence, MecA CLD04_06730 IPR010330 Competence-induced protein CoiA-like CLD04_06730 IPR021176 Competence-induced protein CoiA CLD04_06735 IPR013647 Oligopeptidase F, N-terminal domain CLD04_06735 IPR042088 Oligoendopeptidase F, C-terminal domain CLD04_06735 IPR001567 Peptidase M3A/M3B catalytic domain CLD04_06735 IPR004438 Peptidase M3B, oligoendopeptidase F CLD04_06755 IPR019795 Globin, bacterial-like, conserved site CLD04_06755 IPR012292 Globin/Protoglobin CLD04_06755 IPR001486 Truncated hemoglobin CLD04_06755 IPR009050 Globin-like superfamily CLD04_06760 IPR000189 Prokaryotic transglycosylase, active site CLD04_06760 IPR023346 Lysozyme-like domain superfamily CLD04_06760 IPR008258 Transglycosylase SLT domain 1 CLD04_06765 IPR009195 Uncharacterised protein family YjbK CLD04_06765 IPR023577 CYTH domain CLD04_06765 IPR033469 CYTH-like domain superfamily CLD04_06770 IPR020908 Uncharacterised protein family UPF0738 CLD04_06775 IPR007685 RelA/SpoT CLD04_06780 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal CLD04_06780 IPR002504 NAD kinase CLD04_06780 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily CLD04_06780 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal CLD04_06785 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site CLD04_06785 IPR006145 Pseudouridine synthase, RsuA/RluA CLD04_06785 IPR006225 Pseudouridine synthase, RluC/RluD CLD04_06785 IPR002942 RNA-binding S4 domain CLD04_06785 IPR020103 Pseudouridine synthase, catalytic domain superfamily CLD04_06790 IPR029052 Metallo-dependent phosphatase-like CLD04_06790 IPR041780 PrpE-like, metallophosphatase domain CLD04_06790 IPR023937 Bis(5'-nucleosyl)-tetraphosphatase PrpE CLD04_06790 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type CLD04_06795 IPR036291 NAD(P)-binding domain superfamily CLD04_06795 IPR006153 Cation/H+ exchanger CLD04_06795 IPR038770 Sodium/solute symporter superfamily CLD04_06795 IPR006037 Regulator of K+ conductance, C-terminal CLD04_06795 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily CLD04_06795 IPR003148 Regulator of K+ conductance, N-terminal CLD04_06800 IPR016084 Haem oxygenase-like, multi-helical CLD04_06800 IPR027574 Thiaminase II CLD04_06800 IPR004305 Thiaminase-2/PQQC CLD04_06805 IPR036206 Thiamin phosphate synthase superfamily CLD04_06805 IPR022998 Thiamine phosphate synthase/TenI CLD04_06805 IPR013785 Aldolase-type TIM barrel CLD04_06810 IPR006076 FAD dependent oxidoreductase CLD04_06810 IPR036188 FAD/NAD(P)-binding domain superfamily CLD04_06810 IPR012727 Glycine oxidase ThiO CLD04_06815 IPR010035 ThiS, thiamine-biosynthesis CLD04_06815 IPR012675 Beta-grasp domain superfamily CLD04_06815 IPR003749 Sulfur carrier ThiS/MoaD-like CLD04_06815 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp CLD04_06820 IPR033983 Thiazole synthase ThiG CLD04_06820 IPR008867 Thiazole synthase CLD04_06820 IPR013785 Aldolase-type TIM barrel CLD04_06825 IPR000594 THIF-type NAD/FAD binding fold CLD04_06825 IPR035985 Ubiquitin-activating enzyme CLD04_06830 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase CLD04_06830 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase CLD04_06830 IPR029056 Ribokinase-like CLD04_06835 IPR014358 Enoyl-[acyl-carrier-protein] reductase (NADH) CLD04_06835 IPR036291 NAD(P)-binding domain superfamily CLD04_06835 IPR002347 Short-chain dehydrogenase/reductase SDR CLD04_06840 IPR025439 Spore coat protein CotO CLD04_06845 IPR019593 Spore coat protein Z/Y CLD04_06850 IPR019593 Spore coat protein Z/Y CLD04_06855 IPR011428 Spore coat protein X/V CLD04_06865 IPR011428 Spore coat protein X/V CLD04_06870 IPR010773 Mycobacterium phage PG1, Gp7 CLD04_06885 IPR025942 Stage VI sporulation protein F CLD04_06890 IPR034739 UvrD/AddA helicase, N-terminal CLD04_06890 IPR014017 UvrD-like DNA helicase, C-terminal CLD04_06890 IPR000212 DNA helicase, UvrD/REP type CLD04_06890 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_06890 IPR014016 UvrD-like helicase, ATP-binding domain CLD04_06890 IPR013986 DExx box DNA helicase domain superfamily CLD04_06900 IPR000182 GNAT domain CLD04_06900 IPR016181 Acyl-CoA N-acyltransferase CLD04_06900 IPR039143 Glucosamine 6-phosphate N-acetyltransferase CLD04_06905 IPR009097 Cyclic phosphodiesterase CLD04_06905 IPR022932 Putative phosphoesterase YjcG CLD04_06910 IPR029058 Alpha/Beta hydrolase fold CLD04_06910 IPR000801 Putative esterase CLD04_06915 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_06915 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme CLD04_06915 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_06915 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_06920 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_06920 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme CLD04_06920 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_06920 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_06925 IPR000182 GNAT domain CLD04_06925 IPR016181 Acyl-CoA N-acyltransferase CLD04_06930 IPR008537 Protein of unknown function DUF819 CLD04_06940 IPR041129 CdiI immunity protein CLD04_06950 IPR041129 CdiI immunity protein CLD04_07040 IPR006829 LXG domain CLD04_07040 IPR026834 LHH CLD04_07045 IPR018958 Knr4/Smi1-like domain CLD04_07045 IPR037883 Knr4/Smi1-like domain superfamily CLD04_07125 IPR041129 CdiI immunity protein CLD04_07130 IPR011008 Dimeric alpha-beta barrel CLD04_07130 IPR007138 Antibiotic biosynthesis monooxygenase domain CLD04_07135 IPR002347 Short-chain dehydrogenase/reductase SDR CLD04_07135 IPR020904 Short-chain dehydrogenase/reductase, conserved site CLD04_07135 IPR036291 NAD(P)-binding domain superfamily CLD04_07140 IPR003343 Bacterial Ig-like, group 2 CLD04_07140 IPR008964 Invasin/intimin cell-adhesion fragments CLD04_07145 IPR002178 PTS EIIA type-2 domain CLD04_07145 IPR007737 Mga helix-turn-helix domain CLD04_07145 IPR011608 PRD domain CLD04_07145 IPR013196 Helix-turn-helix, type 11 CLD04_07145 IPR016152 Phosphotransferase/anion transporter CLD04_07145 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_07145 IPR013011 Phosphotransferase system, EIIB component, type 2 CLD04_07145 IPR036095 PTS system IIB component-like superfamily CLD04_07145 IPR036634 PRD domain superfamily CLD04_07150 IPR003501 Phosphotransferase system, EIIB component, type 2/3 CLD04_07150 IPR002178 PTS EIIA type-2 domain CLD04_07150 IPR016152 Phosphotransferase/anion transporter CLD04_07150 IPR003352 Phosphotransferase system, EIIC CLD04_07150 IPR013014 Phosphotransferase system, EIIC component, type 2 CLD04_07150 IPR003353 Phosphotransferase system, fructose-specific IIB subunit CLD04_07150 IPR006327 Phosphotransferase system, fructose IIC component CLD04_07150 IPR013011 Phosphotransferase system, EIIB component, type 2 CLD04_07150 IPR004715 Phosphotransferase system, IIA component fructose subfamily CLD04_07150 IPR036095 PTS system IIB component-like superfamily CLD04_07155 IPR014628 Mannose-6-phosphate isomerase, Firmicutes type, short form CLD04_07155 IPR014710 RmlC-like jelly roll fold CLD04_07155 IPR001250 Mannose-6-phosphate isomerase, type I CLD04_07155 IPR011051 RmlC-like cupin domain superfamily CLD04_07160 IPR016787 Uncharacterised conserved protein UCP021328 CLD04_07165 IPR016181 Acyl-CoA N-acyltransferase CLD04_07165 IPR000182 GNAT domain CLD04_07175 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain CLD04_07175 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily CLD04_07175 IPR004369 Prolyl-tRNA editing protein, YbaK/EbsC CLD04_07180 IPR025234 Protein of unknown function DUF4177 CLD04_07185 IPR016508 Uncharacterised conserved protein UCP007103 CLD04_07185 IPR025440 Protein of unknown function DUF4306 CLD04_07195 IPR006369 Protohaem IX farnesyltransferase CLD04_07195 IPR000537 UbiA prenyltransferase family CLD04_07195 IPR030470 UbiA prenyltransferase conserved site CLD04_07205 IPR017219 Peptidoglycan GlcNAc deacetylase CLD04_07205 IPR037126 PdaC/RsiV-like superfamily CLD04_07205 IPR025303 Deacetylase PdaC CLD04_07205 IPR021729 Domain of unknown function DUF3298 CLD04_07205 IPR002509 NodB homology domain CLD04_07205 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel CLD04_07210 IPR021224 Protein of unknown function DUF2690 CLD04_07215 IPR025906 Putative motility protein CLD04_07220 IPR018728 Domain of unknown function DUF2268 CLD04_07225 IPR021257 Protein of unknown function DUF2809 CLD04_07230 IPR025453 Protein of unknown function DUF4309 CLD04_07240 IPR012440 Protein of unknown function DUF1641 CLD04_07245 IPR029050 Immunoprotective extracellular, immunoglobulin-like domain superfamily CLD04_07245 IPR029051 Domain of unknown function DUF4352 CLD04_07250 IPR015797 NUDIX hydrolase-like domain superfamily CLD04_07250 IPR000086 NUDIX hydrolase domain CLD04_07260 IPR001128 Cytochrome P450 CLD04_07260 IPR002397 Cytochrome P450, B-class CLD04_07260 IPR017972 Cytochrome P450, conserved site CLD04_07260 IPR036396 Cytochrome P450 superfamily CLD04_07265 IPR007235 Glycosyl transferase, family 28, C-terminal CLD04_07265 IPR006326 UDP-glycosyltransferase, MGT CLD04_07275 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily CLD04_07275 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase CLD04_07275 IPR039793 Uroporphyrinogen-III synthase CLD04_07280 IPR005226 UPF0014 family CLD04_07285 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_07285 IPR017871 ABC transporter, conserved site CLD04_07285 IPR003439 ABC transporter-like CLD04_07285 IPR003593 AAA+ ATPase domain CLD04_07285 IPR005670 Phosphate transport system permease protein 1 CLD04_07290 IPR032713 Putative multidrug resistance efflux transporter CLD04_07295 IPR014710 RmlC-like jelly roll fold CLD04_07295 IPR014500 Uncharacterised conserved protein UCP019307, cupin-type CLD04_07295 IPR006045 Cupin 1 CLD04_07295 IPR011051 RmlC-like cupin domain superfamily CLD04_07300 IPR012440 Protein of unknown function DUF1641 CLD04_07305 IPR023753 FAD/NAD(P)-binding domain CLD04_07305 IPR036188 FAD/NAD(P)-binding domain superfamily CLD04_07310 IPR032466 Metal-dependent hydrolase CLD04_07310 IPR003766 Uronate isomerase CLD04_07315 IPR018043 Sodium:galactoside symporter, conserved site CLD04_07315 IPR001927 Sodium:galactoside symporter CLD04_07315 IPR039672 Lactose permease-like CLD04_07315 IPR020846 Major facilitator superfamily domain CLD04_07315 IPR036259 MFS transporter superfamily CLD04_07320 IPR036111 Malate/L-sulfolactate/L-lactate dehydrogenase-like superfamily CLD04_07320 IPR003767 Malate/L-lactate dehydrogenase-like CLD04_07325 IPR036291 NAD(P)-binding domain superfamily CLD04_07325 IPR011032 GroES-like superfamily CLD04_07325 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site CLD04_07325 IPR013154 Alcohol dehydrogenase, N-terminal CLD04_07325 IPR020843 Polyketide synthase, enoylreductase domain CLD04_07325 IPR013149 Alcohol dehydrogenase, C-terminal CLD04_07330 IPR004628 Mannonate dehydratase CLD04_07330 IPR036237 Xylose isomerase-like superfamily CLD04_07335 IPR002347 Short-chain dehydrogenase/reductase SDR CLD04_07335 IPR036291 NAD(P)-binding domain superfamily CLD04_07335 IPR020904 Short-chain dehydrogenase/reductase, conserved site CLD04_07340 IPR020846 Major facilitator superfamily domain CLD04_07340 IPR036259 MFS transporter superfamily CLD04_07340 IPR011701 Major facilitator superfamily CLD04_07340 IPR000849 Sugar phosphate transporter CLD04_07345 IPR028082 Periplasmic binding protein-like I CLD04_07345 IPR000843 LacI-type HTH domain CLD04_07345 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLD04_07350 IPR013131 Mannitol dehydrogenase, N-terminal CLD04_07350 IPR013118 Mannitol dehydrogenase, C-terminal CLD04_07350 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CLD04_07350 IPR000669 Mannitol dehydrogenase CLD04_07350 IPR023668 Altronate oxidoreductase CLD04_07350 IPR013328 6-phosphogluconate dehydrogenase, domain 2 CLD04_07350 IPR036291 NAD(P)-binding domain superfamily CLD04_07355 IPR007392 D-galactarate/Altronate dehydratase, C-terminal CLD04_07355 IPR013974 SAF domain CLD04_07360 IPR002781 Transmembrane protein TauE-like CLD04_07365 IPR034660 DinB/YfiT-like putative metalloenzymes CLD04_07365 IPR007837 DNA damage-inducible protein DinB CLD04_07370 IPR003593 AAA+ ATPase domain CLD04_07370 IPR003959 ATPase, AAA-type, core CLD04_07370 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_07375 IPR019734 Tetratricopeptide repeat CLD04_07375 IPR040702 Response regulator aspartate phosphatase, N-terminal CLD04_07375 IPR013026 Tetratricopeptide repeat-containing domain CLD04_07375 IPR011990 Tetratricopeptide-like helical domain superfamily CLD04_07385 IPR005545 YCII-related CLD04_07385 IPR011008 Dimeric alpha-beta barrel CLD04_07390 IPR018392 LysM domain CLD04_07390 IPR036779 LysM domain superfamily CLD04_07390 IPR036365 PGBD-like superfamily CLD04_07390 IPR002477 Peptidoglycan binding-like CLD04_07390 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily CLD04_07390 IPR036366 PGBD superfamily CLD04_07390 IPR002502 N-acetylmuramoyl-L-alanine amidase domain CLD04_07395 IPR012544 Bacterial Pleckstrin homology domain CLD04_07395 IPR037063 Bacterial Pleckstrin homology domain superfamily CLD04_07400 IPR008585 Poly-gamma-glutamate hydrolase CLD04_07400 IPR038128 Poly-gamma-glutamate hydrolase superfamily CLD04_07405 IPR007760 Manganese catalase CLD04_07405 IPR009078 Ferritin-like superfamily CLD04_07405 IPR039377 Manganese catalase, ferritin-like di-iron-binding domain CLD04_07405 IPR012347 Ferritin-like CLD04_07405 IPR027407 Manganese catalase, C-terminal CLD04_07410 IPR010359 IrrE N-terminal-like domain CLD04_07415 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLD04_07415 IPR001387 Cro/C1-type helix-turn-helix domain CLD04_07425 IPR036390 Winged helix DNA-binding domain superfamily CLD04_07430 IPR003593 AAA+ ATPase domain CLD04_07430 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_07430 IPR002611 IstB-like ATP-binding protein CLD04_07445 IPR035530 Phage-like element PBSX protein XtrA CLD04_07450 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 CLD04_07450 IPR014284 RNA polymerase sigma-70 like domain CLD04_07450 IPR013324 RNA polymerase sigma factor, region 3/4-like CLD04_07450 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_07455 IPR005335 Terminase small subunit CLD04_07455 IPR038713 Terminase small subunit, N-terminal domain superfamily CLD04_07455 IPR018925 Phage terminase small subunit CLD04_07460 IPR035412 Phage terminase large subunit, N-terminal CLD04_07460 IPR035413 Phage terminase large subunit, C-terminal CLD04_07460 IPR006437 Bacteriophage terminase, large subunit CLD04_07465 IPR016753 Phage portal protein PBSX family, Firmicutes CLD04_07465 IPR006944 Bacteriophage/Gene transfer agent portal protein CLD04_07465 IPR006430 Phage portal protein PBSX family CLD04_07470 IPR027924 Phage-like element PBSX protein, XkdF CLD04_07475 IPR024455 Phage capsid CLD04_07480 IPR013514 Protein of unknown function DUF3199, YqbG CLD04_07480 IPR036558 YqbG-like superfamily CLD04_07485 IPR038667 XkdH-like superfamily CLD04_07485 IPR024556 Protein of unknown function DUF3599 CLD04_07490 IPR010064 Bacteriophage HK97-gp10, putative tail-component CLD04_07505 IPR035326 Phage tail sheath protein, beta-sandwich domain CLD04_07505 IPR020287 Tail sheath protein, C-terminal domain CLD04_07505 IPR035089 Tail sheath protein, subtilisin-like domain CLD04_07510 IPR018989 Phage tail tube protein CLD04_07510 IPR038628 XkdM-like superfamily CLD04_07515 IPR038559 Clostridium phage phiCD119, XkdN superfamily CLD04_07515 IPR014986 Clostridium phage phiCD119, XkdN CLD04_07525 IPR008258 Transglycosylase SLT domain 1 CLD04_07525 IPR023346 Lysozyme-like domain superfamily CLD04_07530 IPR036779 LysM domain superfamily CLD04_07530 IPR018392 LysM domain CLD04_07540 IPR022555 Protein of unknown function, DUF2577 CLD04_07545 IPR020288 Protein of unknown function DUF2634 CLD04_07550 IPR006949 Baseplate protein J-like CLD04_07555 IPR018755 Bacteriophage Mu-like, Gp48 CLD04_07565 IPR008983 Tumour necrosis factor-like domain superfamily CLD04_07570 IPR035950 XkdW-like superfamily CLD04_07570 IPR019094 Bacteriophage SP-beta, YorD CLD04_07575 IPR010022 Protein of unknown function XkdX CLD04_07585 IPR019715 Haemolysin XhlA CLD04_07590 IPR006479 Holin CLD04_07595 IPR002502 N-acetylmuramoyl-L-alanine amidase domain CLD04_07595 IPR036365 PGBD-like superfamily CLD04_07595 IPR036366 PGBD superfamily CLD04_07595 IPR036779 LysM domain superfamily CLD04_07595 IPR002477 Peptidoglycan binding-like CLD04_07595 IPR036505 N-acetylmuramoyl-L-alanine amidase/PGRP domain superfamily CLD04_07595 IPR018392 LysM domain CLD04_07600 IPR025897 Antitoxin SpoIISB CLD04_07605 IPR025940 Toxin SpoIISA, type II toxin-antitoxin system CLD04_07610 IPR001204 Phosphate transporter CLD04_07615 IPR038078 PhoU-like domain superfamily CLD04_07615 IPR018445 Putative phosphate transport regulator CLD04_07620 IPR002293 Amino acid/polyamine transporter I CLD04_07625 IPR037523 Vicinal oxygen chelate (VOC) domain CLD04_07625 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CLD04_07625 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CLD04_07630 IPR038731 Glycosyltransferase RgtA/B/C/D-like CLD04_07635 IPR029044 Nucleotide-diphospho-sugar transferases CLD04_07635 IPR001173 Glycosyltransferase 2-like CLD04_07640 IPR036034 PDZ superfamily CLD04_07640 IPR009003 Peptidase S1, PA clan CLD04_07640 IPR001478 PDZ domain CLD04_07640 IPR001940 Peptidase S1C CLD04_07645 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CLD04_07645 IPR036291 NAD(P)-binding domain superfamily CLD04_07645 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal CLD04_07645 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain CLD04_07645 IPR000304 Pyrroline-5-carboxylate reductase CLD04_07650 IPR033824 D-aminopeptidase DppA CLD04_07650 IPR027476 D-aminopeptidase, N-terminal CLD04_07650 IPR007035 Peptidase M55, D-aminopeptidase CLD04_07650 IPR036177 Peptidase M55, D-aminopeptidase superfamily CLD04_07655 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_07655 IPR035906 MetI-like superfamily CLD04_07660 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_07660 IPR025966 Oligopeptide transport permease C-like, N-terminal domain CLD04_07660 IPR035906 MetI-like superfamily CLD04_07665 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal CLD04_07665 IPR003593 AAA+ ATPase domain CLD04_07665 IPR003439 ABC transporter-like CLD04_07665 IPR017871 ABC transporter, conserved site CLD04_07665 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_07670 IPR023765 Solute-binding protein family 5, conserved site CLD04_07670 IPR039424 Solute-binding protein family 5 CLD04_07670 IPR030678 Peptide/nickel binding protein, MppA-type CLD04_07670 IPR000914 Solute-binding protein family 5 domain CLD04_07675 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily CLD04_07675 IPR029062 Class I glutamine amidotransferase-like CLD04_07675 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal CLD04_07675 IPR040921 LD-carboxypeptidase, C-terminal CLD04_07675 IPR040449 LD-carboxypeptidase, N-terminal CLD04_07675 IPR003507 Peptidase family S66 CLD04_07680 IPR036849 Enolase-like, C-terminal domain superfamily CLD04_07680 IPR029065 Enolase C-terminal domain-like CLD04_07680 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal CLD04_07680 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain CLD04_07680 IPR034603 Dipeptide epimerase CLD04_07680 IPR029017 Enolase-like, N-terminal CLD04_07685 IPR000064 Endopeptidase, NLPC/P60 domain CLD04_07685 IPR038765 Papain-like cysteine peptidase superfamily CLD04_07690 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_07690 IPR003593 AAA+ ATPase domain CLD04_07690 IPR003439 ABC transporter-like CLD04_07690 IPR017871 ABC transporter, conserved site CLD04_07690 IPR013563 Oligopeptide/dipeptide ABC transporter, C-terminal CLD04_07695 IPR011048 Cytochrome cd1-nitrite reductase-like, haem d1 domain superfamily CLD04_07695 IPR019405 Lactonase, 7-bladed beta propeller CLD04_07695 IPR015943 WD40/YVTN repeat-like-containing domain superfamily CLD04_07705 IPR033120 Hotdog acyl-CoA thioesterase (ACOT)-type domain CLD04_07705 IPR006683 Thioesterase domain CLD04_07705 IPR040170 Cytosolic acyl coenzyme A thioester hydrolase CLD04_07705 IPR029069 HotDog domain superfamily CLD04_07710 IPR012292 Globin/Protoglobin CLD04_07710 IPR009050 Globin-like superfamily CLD04_07710 IPR001433 Oxidoreductase FAD/NAD(P)-binding CLD04_07710 IPR023950 Flavohemoprotein CLD04_07710 IPR000971 Globin CLD04_07710 IPR017938 Riboflavin synthase-like beta-barrel CLD04_07710 IPR008333 Flavoprotein pyridine nucleotide cytochrome reductase-like, FAD-binding domain CLD04_07710 IPR017927 FAD-binding domain, ferredoxin reductase-type CLD04_07710 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CLD04_07720 IPR023090 UPF0702, alpha/beta domain superfamily CLD04_07720 IPR007353 Protein of unknown function DUF421 CLD04_07725 IPR024775 DinB-like domain CLD04_07725 IPR034660 DinB/YfiT-like putative metalloenzymes CLD04_07730 IPR016181 Acyl-CoA N-acyltransferase CLD04_07730 IPR000182 GNAT domain CLD04_07735 IPR000390 Small multidrug resistance protein family CLD04_07740 IPR000390 Small multidrug resistance protein family CLD04_07745 IPR004810 Formyltetrahydrofolate deformylase CLD04_07745 IPR002912 ACT domain CLD04_07745 IPR041729 Formyltetrahydrofolate deformylase, C-terminal hydrolase domain CLD04_07745 IPR002376 Formyl transferase, N-terminal CLD04_07745 IPR036477 Formyl transferase, N-terminal domain superfamily CLD04_07750 IPR036393 Acetylglutamate kinase-like superfamily CLD04_07750 IPR001048 Aspartate/glutamate/uridylate kinase CLD04_07750 IPR041739 Glutamate-5-kinase domain CLD04_07750 IPR001057 Glutamate/acetylglutamate kinase CLD04_07750 IPR011529 Glutamate 5-kinase CLD04_07750 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase CLD04_07750 IPR002478 PUA domain CLD04_07750 IPR036974 PUA domain superfamily CLD04_07750 IPR019797 Glutamate 5-kinase, conserved site CLD04_07750 IPR015947 PUA-like superfamily CLD04_07755 IPR012134 Glutamate-5-semialdehyde dehydrogenase CLD04_07755 IPR000965 GPR domain CLD04_07755 IPR015590 Aldehyde dehydrogenase domain CLD04_07755 IPR016162 Aldehyde dehydrogenase, N-terminal CLD04_07755 IPR016163 Aldehyde dehydrogenase, C-terminal CLD04_07755 IPR016161 Aldehyde/histidinol dehydrogenase CLD04_07755 IPR020593 Gamma-glutamyl phosphate reductase GPR, conserved site CLD04_07760 IPR019953 Organic hydroperoxide resistance protein famiy CLD04_07760 IPR015946 K homology domain-like, alpha/beta CLD04_07760 IPR036102 OsmC/Ohr superfamily CLD04_07760 IPR003718 OsmC/Ohr family CLD04_07765 IPR000835 MarR-type HTH domain CLD04_07765 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_07765 IPR036390 Winged helix DNA-binding domain superfamily CLD04_07770 IPR019953 Organic hydroperoxide resistance protein famiy CLD04_07770 IPR003718 OsmC/Ohr family CLD04_07770 IPR036102 OsmC/Ohr superfamily CLD04_07770 IPR015946 K homology domain-like, alpha/beta CLD04_07780 IPR016192 APOBEC/CMP deaminase, zinc-binding CLD04_07780 IPR002125 Cytidine and deoxycytidylate deaminase domain CLD04_07780 IPR016193 Cytidine deaminase-like CLD04_07785 IPR023086 Phosphoglycerate mutase, GpmB, probable CLD04_07785 IPR001345 Phosphoglycerate/bisphosphoglycerate mutase, active site CLD04_07785 IPR029033 Histidine phosphatase superfamily CLD04_07785 IPR013078 Histidine phosphatase superfamily, clade-1 CLD04_07790 IPR038071 UROD/MetE-like superfamily CLD04_07790 IPR013215 Cobalamin-independent methionine synthase MetE, N-terminal CLD04_07790 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal CLD04_07790 IPR006276 Cobalamin-independent methionine synthase CLD04_07795 IPR034202 Subtilisin Carlsberg-like catalytic domain CLD04_07795 IPR023828 Peptidase S8, subtilisin, Ser-active site CLD04_07795 IPR022398 Peptidase S8, subtilisin, His-active site CLD04_07795 IPR023827 Peptidase S8, subtilisin, Asp-active site CLD04_07795 IPR000209 Peptidase S8/S53 domain CLD04_07795 IPR015500 Peptidase S8, subtilisin-related CLD04_07795 IPR036852 Peptidase S8/S53 domain superfamily CLD04_07800 IPR036513 STAS domain superfamily CLD04_07800 IPR002645 STAS domain CLD04_07805 IPR003339 ABC/ECF transporter, transmembrane component CLD04_07810 IPR017871 ABC transporter, conserved site CLD04_07810 IPR003593 AAA+ ATPase domain CLD04_07810 IPR003439 ABC transporter-like CLD04_07810 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_07815 IPR017195 ABC-type thiamin-related transport system, permease component 1, predicted CLD04_07820 IPR015835 Hydroxymethyl pyrimidine (HMP)/thiamine binding protein CLD04_07820 IPR029756 MTH1187/YkoF-like CLD04_07820 IPR011522 Thiamin/hydroxymethyl pyrimidine-binding YkoF, putative CLD04_07825 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_07825 IPR001867 OmpR/PhoB-type DNA-binding domain CLD04_07825 IPR001789 Signal transduction response regulator, receiver domain CLD04_07825 IPR039420 Transcriptional regulatory protein WalR-like CLD04_07825 IPR011006 CheY-like superfamily CLD04_07830 IPR005467 Histidine kinase domain CLD04_07830 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLD04_07830 IPR003660 HAMP domain CLD04_07830 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLD04_07830 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_07830 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_07830 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLD04_07835 IPR025711 PepSY domain CLD04_07840 IPR025711 PepSY domain CLD04_07845 IPR022608 Transcription regulator SplA CLD04_07855 IPR006669 Magnesium transporter MgtE CLD04_07855 IPR036739 SLC41 divalent cation transporters, integral membrane domain superfamily CLD04_07855 IPR038048 Magnesium transporter MgtE, transmembrane domain CLD04_07855 IPR006668 Magnesium transporter, MgtE intracellular domain CLD04_07855 IPR038076 MgtE, N-terminal domain superfamily CLD04_07855 IPR000644 CBS domain CLD04_07855 IPR006667 SLC41 divalent cation transporters, integral membrane domain CLD04_07860 IPR000551 MerR-type HTH domain CLD04_07860 IPR009061 Putative DNA-binding domain superfamily CLD04_07875 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_07875 IPR023187 Transcriptional regulator MarR-type, conserved site CLD04_07875 IPR000835 MarR-type HTH domain CLD04_07875 IPR036390 Winged helix DNA-binding domain superfamily CLD04_07880 IPR009695 Diacylglycerol glucosyltransferase, N-terminal CLD04_07890 IPR029052 Metallo-dependent phosphatase-like CLD04_07890 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type CLD04_07900 IPR029044 Nucleotide-diphospho-sugar transferases CLD04_07900 IPR001173 Glycosyltransferase 2-like CLD04_07905 IPR012310 DNA ligase, ATP-dependent, central CLD04_07905 IPR014143 DNA ligase D CLD04_07905 IPR033652 LigD polymerase domain, type 3 CLD04_07905 IPR014146 DNA ligase D, ligase domain CLD04_07905 IPR014145 DNA ligase D, polymerase domain CLD04_07910 IPR016194 SPOC-like, C-terminal domain superfamily CLD04_07910 IPR009187 Non-homologous end joining protein Ku, prokaryotic type CLD04_07910 IPR006164 Ku70/Ku80 beta-barrel domain CLD04_07915 IPR029787 Nucleotide cyclase CLD04_07915 IPR000160 GGDEF domain CLD04_07915 IPR035919 EAL domain superfamily CLD04_07915 IPR001633 EAL domain CLD04_07915 IPR005330 MHYT domain CLD04_07915 IPR035965 PAS domain superfamily CLD04_07920 IPR032816 SNARE associated Golgi protein CLD04_07925 IPR022493 Integral membrane YkoY CLD04_07925 IPR005496 Integral membrane protein TerC CLD04_07925 IPR036259 MFS transporter superfamily CLD04_07930 IPR007627 RNA polymerase sigma-70 region 2 CLD04_07930 IPR014284 RNA polymerase sigma-70 like domain CLD04_07930 IPR013325 RNA polymerase sigma factor, region 2 CLD04_07930 IPR014244 RNA polymerase sigma-I type CLD04_07935 IPR024449 Anti-sigma factor RsgI, N-terminal CLD04_07940 IPR038300 SASP, alpha/beta-type superfamily CLD04_07940 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site CLD04_07940 IPR001448 Small acid-soluble spore protein, alpha/beta-type CLD04_07945 IPR014975 Protein of unknown function DUF1836 CLD04_07950 IPR022919 Peptidase M48, protease HtpX, putative CLD04_07950 IPR001915 Peptidase M48 CLD04_07955 IPR003445 Cation transporter CLD04_07970 IPR002656 Acyltransferase 3 CLD04_07975 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLD04_07975 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_07975 IPR005467 Histidine kinase domain CLD04_07975 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLD04_07975 IPR035965 PAS domain superfamily CLD04_07975 IPR013767 PAS fold CLD04_07975 IPR000014 PAS domain CLD04_07975 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLD04_07975 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_07980 IPR036217 Methylated DNA-protein cysteine methyltransferase, DNA binding domain CLD04_07980 IPR023546 Methylated-DNA--protein-cysteine methyltransferase CLD04_07980 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_07980 IPR008332 Methylguanine DNA methyltransferase, ribonuclease-like domain CLD04_07980 IPR001497 Methylated-DNA-[protein]-cysteine S-methyltransferase, active site CLD04_07980 IPR014048 Methylated-DNA-[protein]-cysteine S-methyltransferase, DNA binding CLD04_07980 IPR036631 Methylated DNA-protein cysteine methyltransferase domain superfamily CLD04_07985 IPR037171 NagB/RpiA transferase-like CLD04_07985 IPR011559 Initiation factor 2B alpha/beta/delta CLD04_07985 IPR027363 Methylthioribose-1-phosphate isomerase, N-terminal CLD04_07985 IPR005251 Methylthioribose-1-phosphate isomerase CLD04_07985 IPR000649 Initiation factor 2B-related CLD04_07990 IPR002575 Aminoglycoside phosphotransferase CLD04_07990 IPR009212 Methylthioribose kinase CLD04_07990 IPR011009 Protein kinase-like domain superfamily CLD04_07995 IPR036526 Carbon-nitrogen hydrolase superfamily CLD04_07995 IPR003010 Carbon-nitrogen hydrolase CLD04_08000 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_08000 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_08000 IPR004839 Aminotransferase, class I/classII CLD04_08000 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_08005 IPR036422 RuBisCO large subunit, N-terminal domain superfamily CLD04_08005 IPR017443 Ribulose bisphosphate carboxylase, large subunit, ferrodoxin-like N-terminal CLD04_08005 IPR017717 2,3-diketo-5-methylthiopentyl-1-phosphate enolase CLD04_08005 IPR033966 RuBisCO CLD04_08005 IPR000685 Ribulose bisphosphate carboxylase, large subunit, C-terminal CLD04_08005 IPR036376 Ribulose bisphosphate carboxylase, large subunit, C-terminal domain superfamily CLD04_08010 IPR017718 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase CLD04_08010 IPR023214 HAD superfamily CLD04_08010 IPR006384 Pyridoxal phosphate phosphatase-related CLD04_08010 IPR036412 HAD-like superfamily CLD04_08015 IPR017714 Methylthioribulose-1-phosphate dehydratase CLD04_08015 IPR036409 Class II aldolase/adducin N-terminal domain superfamily CLD04_08015 IPR001303 Class II aldolase/adducin N-terminal CLD04_08020 IPR011051 RmlC-like cupin domain superfamily CLD04_08020 IPR014710 RmlC-like jelly roll fold CLD04_08020 IPR023956 Acireductone dioxygenase ARD, bacteria CLD04_08020 IPR004313 Acireductone dioxygenase ARD family CLD04_08025 IPR010652 Domain of unknown function DUF1232 CLD04_08030 IPR037208 Aspartyl-phosphate phosphatase Spo0E-like superfamily CLD04_08030 IPR018540 Aspartyl-phosphate phosphatase Spo0E-like CLD04_08040 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLD04_08040 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLD04_08040 IPR029151 Periplasmic sensor-like domain superfamily CLD04_08040 IPR033479 Double Cache domain 1 CLD04_08040 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLD04_08040 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_08040 IPR005467 Histidine kinase domain CLD04_08040 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_08045 IPR000835 MarR-type HTH domain CLD04_08045 IPR023187 Transcriptional regulator MarR-type, conserved site CLD04_08045 IPR036390 Winged helix DNA-binding domain superfamily CLD04_08045 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_08050 IPR036737 OmpA-like domain superfamily CLD04_08050 IPR025713 Motility protein B, N-terminal domain CLD04_08050 IPR006665 OmpA-like domain CLD04_08055 IPR000540 Flagellar motor protein MotA, conserved site CLD04_08055 IPR002898 MotA/TolQ/ExbB proton channel CLD04_08060 IPR018368 ClpA/B, conserved site 1 CLD04_08060 IPR041546 ClpA/ClpB, AAA lid domain CLD04_08060 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_08060 IPR003959 ATPase, AAA-type, core CLD04_08060 IPR003593 AAA+ ATPase domain CLD04_08060 IPR001943 UVR domain CLD04_08060 IPR028299 ClpA/B, conserved site 2 CLD04_08060 IPR001270 ClpA/B family CLD04_08060 IPR019489 Clp ATPase, C-terminal CLD04_08065 IPR038728 Uncharacterized membrane protein YkvI CLD04_08070 IPR018317 Queuosine biosynthesis protein QueC CLD04_08070 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLD04_08075 IPR007115 6-pyruvoyl tetrahydropterin synthase/QueD family CLD04_08075 IPR038418 6-pyruvoyl tetrahydropterin synthase/QueD superfamily CLD04_08080 IPR007197 Radical SAM CLD04_08080 IPR024924 7-carboxy-7-deazaguanine synthase-like CLD04_08080 IPR013785 Aldolase-type TIM barrel CLD04_08080 IPR017742 7-carboxy-7-deazaguanine synthase CLD04_08085 IPR029500 NADPH-dependent 7-cyano-7-deazaguanine reductase QueF CLD04_08085 IPR016856 NADPH-dependent 7-cyano-7-deazaguanine reductase, QueF type 1 CLD04_08090 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_08090 IPR002577 Helix-turn-helix, HxlR type CLD04_08090 IPR036390 Winged helix DNA-binding domain superfamily CLD04_08095 IPR036291 NAD(P)-binding domain superfamily CLD04_08095 IPR002347 Short-chain dehydrogenase/reductase SDR CLD04_08100 IPR018392 LysM domain CLD04_08100 IPR036779 LysM domain superfamily CLD04_08105 IPR018392 LysM domain CLD04_08105 IPR036779 LysM domain superfamily CLD04_08110 IPR001223 Glycoside hydrolase family 18, catalytic domain CLD04_08110 IPR011583 Chitinase II CLD04_08110 IPR017853 Glycoside hydrolase superfamily CLD04_08115 IPR021596 Protein of unknown function DUF3219 CLD04_08115 IPR023105 YkvR-like superfamily CLD04_08120 IPR018690 Protein of unknown function DUF2187 CLD04_08130 IPR011105 Cell wall hydrolase, SleB CLD04_08130 IPR042047 Cell wall hydrolase SleB, domain 1 CLD04_08135 IPR002797 Polysaccharide biosynthesis protein CLD04_08135 IPR024923 Peptidoglycan biosynthesis protein, SpoVB-type CLD04_08140 IPR013766 Thioredoxin domain CLD04_08140 IPR017937 Thioredoxin, conserved site CLD04_08140 IPR036249 Thioredoxin-like superfamily CLD04_08140 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant CLD04_08145 IPR036412 HAD-like superfamily CLD04_08145 IPR023214 HAD superfamily CLD04_08145 IPR027256 P-type ATPase, subfamily IB CLD04_08145 IPR008250 P-type ATPase, A domain superfamily CLD04_08145 IPR001757 P-type ATPase CLD04_08145 IPR023299 P-type ATPase, cytoplasmic domain N CLD04_08145 IPR023298 P-type ATPase, transmembrane domain superfamily CLD04_08145 IPR018303 P-type ATPase, phosphorylation site CLD04_08155 IPR036005 Creatinase/aminopeptidase-like CLD04_08155 IPR000587 Creatinase, N-terminal CLD04_08155 IPR000994 Peptidase M24 CLD04_08155 IPR001714 Peptidase M24, methionine aminopeptidase CLD04_08155 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site CLD04_08155 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal CLD04_08160 IPR000843 LacI-type HTH domain CLD04_08160 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLD04_08160 IPR001761 Periplasmic binding protein/LacI sugar binding domain CLD04_08160 IPR028082 Periplasmic binding protein-like I CLD04_08165 IPR036650 CAT RNA-binding domain superfamily CLD04_08165 IPR001550 Transcription antiterminator, conserved site CLD04_08165 IPR011608 PRD domain CLD04_08165 IPR036634 PRD domain superfamily CLD04_08165 IPR004341 CAT RNA-binding domain CLD04_08170 IPR011299 PTS system glucose-specific IIBC component CLD04_08170 IPR001996 Phosphotransferase system, IIB component, type 1 CLD04_08170 IPR013013 Phosphotransferase system, EIIC component, type 1 CLD04_08170 IPR003352 Phosphotransferase system, EIIC CLD04_08170 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component CLD04_08170 IPR011055 Duplicated hybrid motif CLD04_08170 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site CLD04_08170 IPR036878 Glucose permease domain IIB CLD04_08170 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 CLD04_08175 IPR002114 Phosphotransferase system, HPr serine phosphorylation site CLD04_08175 IPR000032 Phosphocarrier protein HPr-like CLD04_08175 IPR001020 Phosphotransferase system, HPr histidine phosphorylation site CLD04_08175 IPR035895 HPr-like superfamily CLD04_08180 IPR008279 PEP-utilising enzyme, mobile domain CLD04_08180 IPR018274 PEP-utilising enzyme, active site CLD04_08180 IPR008731 Phosphotransferase system, enzyme I N-terminal CLD04_08180 IPR024692 Phosphotransferase system, enzyme I CLD04_08180 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily CLD04_08180 IPR040442 Pyruvate kinase-like domain superfamily CLD04_08180 IPR000121 PEP-utilising enzyme, C-terminal CLD04_08180 IPR023151 PEP-utilising enzyme, conserved site CLD04_08180 IPR036637 Phosphohistidine domain superfamily CLD04_08180 IPR006318 Phosphotransferase system, enzyme I-like CLD04_08180 IPR036618 PtsI, HPr-binding domain superfamily CLD04_08190 IPR022608 Transcription regulator SplA CLD04_08195 IPR034560 Spore photoproduct lyase, Bacilli type CLD04_08195 IPR007197 Radical SAM CLD04_08195 IPR023897 Spore photoproduct lyase CLD04_08200 IPR000182 GNAT domain CLD04_08200 IPR016181 Acyl-CoA N-acyltransferase CLD04_08205 IPR003660 HAMP domain CLD04_08205 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLD04_08205 IPR029151 Periplasmic sensor-like domain superfamily CLD04_08205 IPR033479 Double Cache domain 1 CLD04_08210 IPR036291 NAD(P)-binding domain superfamily CLD04_08210 IPR029154 3-hydroxyisobutyrate dehydrogenase, NAD-binding domain CLD04_08210 IPR015815 3-hydroxyisobutyrate dehydrogenase-related CLD04_08210 IPR002204 3-hydroxyisobutyrate dehydrogenase-related, conserved site CLD04_08210 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CLD04_08210 IPR013328 6-phosphogluconate dehydrogenase, domain 2 CLD04_08210 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding CLD04_08215 IPR035940 CAP superfamily CLD04_08215 IPR014258 CAP domain, YkwD-like CLD04_08215 IPR014044 CAP domain CLD04_08220 IPR001460 Penicillin-binding protein, transpeptidase CLD04_08220 IPR036138 Penicillin-binding protein, dimerisation domain superfamily CLD04_08220 IPR005311 Penicillin-binding protein, dimerisation domain CLD04_08220 IPR012338 Beta-lactamase/transpeptidase-like CLD04_08225 IPR013767 PAS fold CLD04_08225 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLD04_08225 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLD04_08225 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLD04_08225 IPR013655 PAS fold-3 CLD04_08225 IPR005467 Histidine kinase domain CLD04_08225 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_08225 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_08225 IPR001610 PAC motif CLD04_08225 IPR000014 PAS domain CLD04_08225 IPR035965 PAS domain superfamily CLD04_08230 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_08230 IPR004839 Aminotransferase, class I/classII CLD04_08230 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site CLD04_08230 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_08230 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_08240 IPR011006 CheY-like superfamily CLD04_08240 IPR002545 CheW-like domain CLD04_08240 IPR024181 Chemotaxis response regulator CheV CLD04_08240 IPR001789 Signal transduction response regulator, receiver domain CLD04_08240 IPR036061 CheW-like domain superfamily CLD04_08245 IPR025552 YkyB-like protein CLD04_08250 IPR004751 Drug antiporter protein CLD04_08250 IPR036259 MFS transporter superfamily CLD04_08250 IPR020846 Major facilitator superfamily domain CLD04_08250 IPR011701 Major facilitator superfamily CLD04_08255 IPR005490 L,D-transpeptidase catalytic domain CLD04_08255 IPR038063 L,D-transpeptidase catalytic domain-like CLD04_08255 IPR018392 LysM domain CLD04_08255 IPR036779 LysM domain superfamily CLD04_08260 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type CLD04_08260 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal CLD04_08260 IPR006311 Twin-arginine translocation pathway, signal sequence CLD04_08260 IPR029052 Metallo-dependent phosphatase-like CLD04_08265 IPR002347 Short-chain dehydrogenase/reductase SDR CLD04_08265 IPR036291 NAD(P)-binding domain superfamily CLD04_08270 IPR001633 EAL domain CLD04_08270 IPR035919 EAL domain superfamily CLD04_08270 IPR029151 Periplasmic sensor-like domain superfamily CLD04_08270 IPR018842 YkuI, C-terminal CLD04_08275 IPR014904 Protein of unknown function DUF1797 CLD04_08275 IPR038073 YkuJ-like superfamily CLD04_08280 IPR007405 Bacteriophage KVP40, Orf299 CLD04_08285 IPR025446 Antirepressor AbbA CLD04_08295 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_08295 IPR036390 Winged helix DNA-binding domain superfamily CLD04_08295 IPR000847 Transcription regulator HTH, LysR CLD04_08295 IPR005119 LysR, substrate-binding CLD04_08300 IPR010087 Flavodoxin, short chain CLD04_08300 IPR001094 Flavodoxin-like CLD04_08300 IPR008254 Flavodoxin/nitric oxide synthase CLD04_08300 IPR029039 Flavoprotein-like superfamily CLD04_08305 IPR015943 WD40/YVTN repeat-like-containing domain superfamily CLD04_08310 IPR029039 Flavoprotein-like superfamily CLD04_08310 IPR008254 Flavodoxin/nitric oxide synthase CLD04_08310 IPR001094 Flavodoxin-like CLD04_08310 IPR010087 Flavodoxin, short chain CLD04_08310 IPR001226 Flavodoxin, conserved site CLD04_08315 IPR019873 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, DapH CLD04_08315 IPR011004 Trimeric LpxA-like superfamily CLD04_08315 IPR013710 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase, N-terminal CLD04_08315 IPR001451 Hexapeptide repeat CLD04_08315 IPR018357 Hexapeptide transferase, conserved site CLD04_08320 IPR011650 Peptidase M20, dimerisation domain CLD04_08320 IPR023905 Acetyldiaminopimelate deacetylase CLD04_08320 IPR002933 Peptidase M20 CLD04_08320 IPR036264 Bacterial exopeptidase dimerisation domain CLD04_08320 IPR017439 Amidohydrolase CLD04_08325 IPR005370 Uncharacterised protein family UPF0180 CLD04_08335 IPR006685 Mechanosensitive ion channel MscS CLD04_08335 IPR011014 Mechanosensitive ion channel MscS, transmembrane-2 CLD04_08335 IPR011066 Mechanosensitive ion channel MscS, C-terminal CLD04_08335 IPR023408 Mechanosensitive ion channel MscS domain superfamily CLD04_08335 IPR010920 LSM domain superfamily CLD04_08340 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant CLD04_08340 IPR013766 Thioredoxin domain CLD04_08340 IPR036249 Thioredoxin-like superfamily CLD04_08340 IPR019479 Peroxiredoxin, C-terminal CLD04_08340 IPR024706 Peroxiredoxin, AhpC-type CLD04_08345 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant CLD04_08345 IPR013766 Thioredoxin domain CLD04_08345 IPR036249 Thioredoxin-like superfamily CLD04_08365 IPR029044 Nucleotide-diphospho-sugar transferases CLD04_08365 IPR013482 Molybdenum cofactor guanylyltransferase CLD04_08365 IPR025877 MobA-like NTP transferase CLD04_08370 IPR000594 THIF-type NAD/FAD binding fold CLD04_08370 IPR035985 Ubiquitin-activating enzyme CLD04_08375 IPR038987 Molybdopterin biosynthesis protein MoeA-like CLD04_08375 IPR036135 MoeA, N-terminal and linker domain superfamily CLD04_08375 IPR001453 MoaB/Mog domain CLD04_08375 IPR005110 MoeA, N-terminal and linker domain CLD04_08375 IPR005111 MoeA, C-terminal, domain IV CLD04_08375 IPR036425 MoaB/Mog-like domain superfamily CLD04_08375 IPR036688 MoeA, C-terminal, domain IV superfamily CLD04_08380 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_08380 IPR004435 Molybdopterin-guanine dinucleotide biosynthesis protein B (MobB) domain CLD04_08385 IPR036563 Molybdopterin biosynthesis MoaE subunit superfamily CLD04_08385 IPR003448 Molybdopterin biosynthesis MoaE CLD04_08390 IPR012675 Beta-grasp domain superfamily CLD04_08390 IPR016155 Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp CLD04_08390 IPR003749 Sulfur carrier ThiS/MoaD-like CLD04_08395 IPR036640 ABC transporter type 1, transmembrane domain superfamily CLD04_08395 IPR003439 ABC transporter-like CLD04_08395 IPR003593 AAA+ ATPase domain CLD04_08395 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_08395 IPR039421 Type I protein exporter CLD04_08395 IPR017871 ABC transporter, conserved site CLD04_08395 IPR011527 ABC transporter type 1, transmembrane domain CLD04_08400 IPR003593 AAA+ ATPase domain CLD04_08400 IPR011527 ABC transporter type 1, transmembrane domain CLD04_08400 IPR036640 ABC transporter type 1, transmembrane domain superfamily CLD04_08400 IPR003439 ABC transporter-like CLD04_08400 IPR039421 Type I protein exporter CLD04_08400 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_08400 IPR017871 ABC transporter, conserved site CLD04_08405 IPR006977 Yip1 domain CLD04_08410 IPR006143 RND efflux pump, membrane fusion protein CLD04_08410 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CLD04_08415 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_08415 IPR003439 ABC transporter-like CLD04_08415 IPR017871 ABC transporter, conserved site CLD04_08415 IPR003593 AAA+ ATPase domain CLD04_08420 IPR003838 ABC transporter permease protein domain CLD04_08420 IPR005085 Carbohydrate binding module family 25 CLD04_08420 IPR025857 MacB-like periplasmic core domain CLD04_08425 IPR037171 NagB/RpiA transferase-like CLD04_08425 IPR001034 DeoR-type HTH domain CLD04_08425 IPR014036 DeoR C-terminal sensor domain CLD04_08425 IPR036390 Winged helix DNA-binding domain superfamily CLD04_08425 IPR018356 Transcription regulator, HTH DeoR-type, conserved site CLD04_08430 IPR029056 Ribokinase-like CLD04_08430 IPR017583 Tagatose/fructose phosphokinase CLD04_08430 IPR011611 Carbohydrate kinase PfkB CLD04_08430 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site CLD04_08430 IPR022463 Fructose 1-phosphate kinase CLD04_08435 IPR036095 PTS system IIB component-like superfamily CLD04_08435 IPR013011 Phosphotransferase system, EIIB component, type 2 CLD04_08435 IPR003501 Phosphotransferase system, EIIB component, type 2/3 CLD04_08435 IPR013014 Phosphotransferase system, EIIC component, type 2 CLD04_08435 IPR004715 Phosphotransferase system, IIA component fructose subfamily CLD04_08435 IPR016152 Phosphotransferase/anion transporter CLD04_08435 IPR002178 PTS EIIA type-2 domain CLD04_08435 IPR006327 Phosphotransferase system, fructose IIC component CLD04_08435 IPR003353 Phosphotransferase system, fructose-specific IIB subunit CLD04_08440 IPR019758 Peptidase S26A, signal peptidase I, conserved site CLD04_08440 IPR036286 LexA/Signal peptidase-like superfamily CLD04_08440 IPR000223 Peptidase S26A, signal peptidase I CLD04_08440 IPR019757 Peptidase S26A, signal peptidase I, lysine active site CLD04_08440 IPR019756 Peptidase S26A, signal peptidase I, serine active site CLD04_08440 IPR019533 Peptidase S26 CLD04_08450 IPR032781 ABC-transporter extension domain CLD04_08450 IPR003439 ABC transporter-like CLD04_08450 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_08450 IPR003593 AAA+ ATPase domain CLD04_08455 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CLD04_08455 IPR013332 Ketopantoate reductase, N-terminal domain CLD04_08455 IPR013752 Ketopantoate reductase, C-terminal domain CLD04_08455 IPR013328 6-phosphogluconate dehydrogenase, domain 2 CLD04_08455 IPR036291 NAD(P)-binding domain superfamily CLD04_08455 IPR003710 Ketopantoate reductase ApbA/PanE CLD04_08460 IPR000787 Peptidase M29 CLD04_08460 IPR035097 Peptidase M29, N-terminal CLD04_08465 IPR035379 Uncharacterized protein YkpC-like CLD04_08470 IPR004753 Cell shape determining protein MreB CLD04_08475 IPR040678 AbrB, C-terminal CLD04_08475 IPR007159 SpoVT-AbrB domain CLD04_08475 IPR037914 SpoVT-AbrB domain superfamily CLD04_08480 IPR000700 PAS-associated, C-terminal CLD04_08480 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLD04_08480 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_08480 IPR005467 Histidine kinase domain CLD04_08480 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLD04_08480 IPR001610 PAC motif CLD04_08480 IPR000014 PAS domain CLD04_08480 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_08480 IPR035965 PAS domain superfamily CLD04_08480 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLD04_08480 IPR013767 PAS fold CLD04_08485 IPR036568 Gamma-glutamyl cyclotransferase-like superfamily CLD04_08485 IPR009288 Gamma-glutamylcyclotransferase, AIG2-like CLD04_08485 IPR039126 Gamma-glutamylaminecyclotransferase CLD04_08485 IPR013024 Gamma-glutamyl cyclotransferase-like CLD04_08490 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily CLD04_08490 IPR003148 Regulator of K+ conductance, N-terminal CLD04_08490 IPR006037 Regulator of K+ conductance, C-terminal CLD04_08490 IPR036291 NAD(P)-binding domain superfamily CLD04_08495 IPR006679 Adenine deaminase CLD04_08495 IPR026912 Adenine deaminase C-terminal domain CLD04_08495 IPR006680 Amidohydrolase-related CLD04_08495 IPR011059 Metal-dependent hydrolase, composite domain superfamily CLD04_08495 IPR032466 Metal-dependent hydrolase CLD04_08500 IPR001279 Metallo-beta-lactamase CLD04_08500 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLD04_08500 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain CLD04_08500 IPR004613 Ribonuclease J CLD04_08500 IPR042173 Ribonuclease J, domain 2 CLD04_08500 IPR030854 Ribonuclease J, bacteria CLD04_08500 IPR041636 Ribonuclease J, C-terminal CLD04_08500 IPR001587 Ribonuclease J, conserved site CLD04_08510 IPR023214 HAD superfamily CLD04_08510 IPR036412 HAD-like superfamily CLD04_08510 IPR006379 HAD-superfamily hydrolase, subfamily IIB CLD04_08510 IPR000150 Cof family CLD04_08515 IPR023635 Peptide deformylase CLD04_08515 IPR036821 Peptide deformylase superfamily CLD04_08525 IPR036785 YkyA-like superfamily CLD04_08525 IPR019454 Putative cell-wall binding lipoprotein YkyA-like CLD04_08530 IPR001017 Dehydrogenase, E1 component CLD04_08530 IPR029061 Thiamin diphosphate-binding fold CLD04_08530 IPR017596 Pyruvate dehydrogenase E1 component subunit alpha/BCKADH E1-alpha CLD04_08535 IPR029061 Thiamin diphosphate-binding fold CLD04_08535 IPR005475 Transketolase-like, pyrimidine-binding domain CLD04_08535 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II CLD04_08535 IPR033248 Transketolase, C-terminal domain CLD04_08540 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site CLD04_08540 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain CLD04_08540 IPR036625 E3-binding domain superfamily CLD04_08540 IPR011053 Single hybrid motif CLD04_08540 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CLD04_08540 IPR000089 Biotin/lipoyl attachment CLD04_08540 IPR004167 Peripheral subunit-binding domain CLD04_08545 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site CLD04_08545 IPR006258 Dihydrolipoamide dehydrogenase CLD04_08545 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CLD04_08545 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily CLD04_08545 IPR023753 FAD/NAD(P)-binding domain CLD04_08545 IPR036188 FAD/NAD(P)-binding domain superfamily CLD04_08545 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I CLD04_08555 IPR025236 SR1 protein CLD04_08560 IPR036633 Orn/Lys/Arg decarboxylase, C-terminal domain superfamily CLD04_08560 IPR008286 Orn/Lys/Arg decarboxylase, C-terminal CLD04_08560 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_08560 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_08560 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_08560 IPR000310 Orn/Lys/Arg decarboxylase, major domain CLD04_08565 IPR007920 Protein of unknown function UPF0223 CLD04_08565 IPR023324 BH2638-like superfamily CLD04_08570 IPR009403 Protein of unknown function UPF0637 CLD04_08580 IPR020550 Inositol monophosphatase, conserved site CLD04_08580 IPR000760 Inositol monophosphatase-like CLD04_08580 IPR020583 Inositol monophosphatase, metal-binding site CLD04_08585 IPR016181 Acyl-CoA N-acyltransferase CLD04_08585 IPR000182 GNAT domain CLD04_08590 IPR007213 Methyltransferase Ppm1/Ppm2/Tcmp CLD04_08590 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_08590 IPR016874 Tetracenomycin polyketide synthesis O-methyltransferase TcmP CLD04_08590 IPR011610 S-adenosyl-L-methionine-dependent methyltransferase, putative CLD04_08595 IPR013856 Peptidase M4 domain CLD04_08595 IPR023612 Peptidase M4 CLD04_08595 IPR027268 Peptidase M4/M1, CTD superfamily CLD04_08595 IPR025711 PepSY domain CLD04_08595 IPR011096 FTP domain CLD04_08595 IPR001570 Peptidase M4, C-terminal CLD04_08610 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 CLD04_08610 IPR014284 RNA polymerase sigma-70 like domain CLD04_08610 IPR013325 RNA polymerase sigma factor, region 2 CLD04_08610 IPR014296 RNA polymerase sigma-M, bacillaceae CLD04_08610 IPR039425 RNA polymerase sigma-70 like CLD04_08610 IPR007627 RNA polymerase sigma-70 region 2 CLD04_08610 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_08610 IPR013324 RNA polymerase sigma factor, region 3/4-like CLD04_08615 IPR027383 Putative zinc-finger CLD04_08625 IPR035211 Protein of unknown function DUF5325 CLD04_08635 IPR025620 YlaH-like protein CLD04_08640 IPR019241 Protein of unknown function DUF2197 CLD04_08645 IPR019076 Sporulation lipoprotein YhcN/YlaJ-like CLD04_08645 IPR014247 Sporulation lipoprotein YhcN/YlaJ CLD04_08650 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_08650 IPR029060 PIN-like domain superfamily CLD04_08650 IPR002716 PIN domain CLD04_08650 IPR003714 PhoH-like protein CLD04_08660 IPR012338 Beta-lactamase/transpeptidase-like CLD04_08660 IPR015868 Glutaminase CLD04_08665 IPR036270 UPF0358 superfamily CLD04_08665 IPR009983 Uncharacterised protein family UPF0358 CLD04_08670 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site CLD04_08670 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA CLD04_08675 IPR011761 ATP-grasp fold CLD04_08675 IPR011053 Single hybrid motif CLD04_08675 IPR011054 Rudiment single hybrid motif CLD04_08675 IPR013785 Aldolase-type TIM barrel CLD04_08675 IPR000891 Pyruvate carboxyltransferase CLD04_08675 IPR016185 Pre-ATP-grasp domain superfamily CLD04_08675 IPR005930 Pyruvate carboxylase CLD04_08675 IPR003379 Carboxylase, conserved domain CLD04_08675 IPR005482 Biotin carboxylase, C-terminal CLD04_08675 IPR011764 Biotin carboxylation domain CLD04_08675 IPR005481 Biotin carboxylase-like, N-terminal domain CLD04_08675 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain CLD04_08675 IPR000089 Biotin/lipoyl attachment CLD04_08680 IPR023755 Heme A synthase, type 1 CLD04_08680 IPR003780 COX15/CtaA family CLD04_08685 IPR006369 Protohaem IX farnesyltransferase CLD04_08685 IPR030470 UbiA prenyltransferase conserved site CLD04_08685 IPR000537 UbiA prenyltransferase family CLD04_08690 IPR008972 Cupredoxin CLD04_08690 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily CLD04_08690 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain CLD04_08690 IPR014222 Cytochrome c oxidase, subunit II CLD04_08690 IPR036909 Cytochrome c-like domain superfamily CLD04_08690 IPR001505 Copper centre Cu(A) CLD04_08690 IPR034236 Caa3-type Cytochrome c oxidase subunit II, cupredoxin domain CLD04_08690 IPR009056 Cytochrome c-like domain CLD04_08690 IPR002429 Cytochrome c oxidase subunit II-like C-terminal CLD04_08695 IPR036927 Cytochrome c oxidase-like, subunit I superfamily CLD04_08695 IPR023616 Cytochrome c oxidase-like, subunit I domain CLD04_08695 IPR000883 Cytochrome c oxidase subunit I CLD04_08695 IPR014241 Cytochrome c oxidase, subunit I bacterial type CLD04_08695 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site CLD04_08700 IPR033946 Ubiquinol oxidase subunit III domain CLD04_08700 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle CLD04_08700 IPR035973 Cytochrome c oxidase subunit III-like superfamily CLD04_08700 IPR000298 Cytochrome c oxidase subunit III-like CLD04_08700 IPR024791 Cytochrome c oxidase subunit III CLD04_08705 IPR014257 Cytochrome c oxidase, subunit IV bacillaceae CLD04_08705 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes CLD04_08710 IPR019108 Cytochrome c oxidase caa3-type, assembly factor CtaG-related CLD04_08710 IPR014108 Cytochrome c oxidase caa3 type assembly factor CtaG CLD04_08715 IPR014967 Uncharacterised protein family, YugN-like CLD04_08715 IPR036491 YugN-like superfamily CLD04_08720 IPR000644 CBS domain CLD04_08725 IPR029410 CAP-associated domain CLD04_08725 IPR014044 CAP domain CLD04_08725 IPR035940 CAP superfamily CLD04_08730 IPR025953 Putative coat protein YlbD CLD04_08735 IPR025613 YlbE-like protein CLD04_08740 IPR023378 YheA/YmcA-like domain superfamily CLD04_08740 IPR010368 Control of competence regulator ComK, YlbF/YmcA CLD04_08745 IPR016979 Protein of unknown function DUF2129 CLD04_08750 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_08750 IPR004398 RNA methyltransferase, RsmD CLD04_08755 IPR004821 Cytidyltransferase-like domain CLD04_08755 IPR001980 Phosphopantetheine adenylyltransferase CLD04_08755 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLD04_08760 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain CLD04_08760 IPR014226 Sporulation integral membrane protein YlbJ CLD04_08765 IPR002641 Patatin-like phospholipase domain CLD04_08765 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase CLD04_08765 IPR001423 Lysophospholipase patatin, conserved site CLD04_08770 IPR008269 Peptidase S16, Lon proteolytic domain CLD04_08770 IPR027065 Lon protease CLD04_08770 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLD04_08770 IPR020568 Ribosomal protein S5 domain 2-type fold CLD04_08770 IPR036034 PDZ superfamily CLD04_08770 IPR001478 PDZ domain CLD04_08770 IPR039381 Endopeptidase La, PDZ domain CLD04_08775 IPR008513 tRNA(Met) cytidine acetate ligase CLD04_08775 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLD04_08785 IPR003772 Large ribosomal RNA subunit accumulation protein YceD CLD04_08790 IPR002677 Ribosomal protein L32p CLD04_08790 IPR011332 Zinc-binding ribosomal protein CLD04_08795 IPR014243 Transcription factor, RsfA CLD04_08795 IPR017930 Myb domain CLD04_08795 IPR009057 Homeobox-like domain superfamily CLD04_08800 IPR000182 GNAT domain CLD04_08800 IPR017274 Putative N-acetyltransferase YlbP CLD04_08800 IPR016181 Acyl-CoA N-acyltransferase CLD04_08805 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CLD04_08805 IPR013328 6-phosphogluconate dehydrogenase, domain 2 CLD04_08805 IPR003710 Ketopantoate reductase ApbA/PanE CLD04_08805 IPR013752 Ketopantoate reductase, C-terminal domain CLD04_08805 IPR036291 NAD(P)-binding domain superfamily CLD04_08805 IPR013332 Ketopantoate reductase, N-terminal domain CLD04_08810 IPR011199 Bacillithiol biosynthesis BshC CLD04_08815 IPR038619 MraZ superfamily CLD04_08815 IPR037914 SpoVT-AbrB domain superfamily CLD04_08815 IPR035642 MraZ, N-terminal CLD04_08815 IPR003444 Transcriptional regulator MraZ CLD04_08815 IPR035644 MraZ, C-terminal CLD04_08815 IPR020603 MraZ domain CLD04_08815 IPR007159 SpoVT-AbrB domain CLD04_08820 IPR023397 S-adenosyl-L-methionine-dependent methyltransferase, MraW, recognition domain superfamily CLD04_08820 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_08820 IPR002903 Ribosomal RNA small subunit methyltransferase H CLD04_08825 IPR011922 Cell division protein FtsL CLD04_08835 IPR005543 PASTA domain CLD04_08835 IPR005311 Penicillin-binding protein, dimerisation domain CLD04_08835 IPR036138 Penicillin-binding protein, dimerisation domain superfamily CLD04_08835 IPR001460 Penicillin-binding protein, transpeptidase CLD04_08835 IPR011927 Stage V sporulation protein D CLD04_08835 IPR012338 Beta-lactamase/transpeptidase-like CLD04_08840 IPR000713 Mur ligase, N-terminal catalytic domain CLD04_08840 IPR013221 Mur ligase, central CLD04_08840 IPR036615 Mur ligase, C-terminal domain superfamily CLD04_08840 IPR004101 Mur ligase, C-terminal CLD04_08840 IPR036565 Mur-like, catalytic domain superfamily CLD04_08840 IPR005761 UDP-N-acetylmuramoylalanyl-D-glutamate-2,6-diaminopimelate ligase CLD04_08840 IPR035911 MurE/MurF, N-terminal CLD04_08845 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site CLD04_08845 IPR003524 Phospho-N-acetylmuramoyl-pentapeptide transferase CLD04_08845 IPR000715 Glycosyl transferase, family 4 CLD04_08850 IPR004101 Mur ligase, C-terminal CLD04_08850 IPR036615 Mur ligase, C-terminal domain superfamily CLD04_08850 IPR013221 Mur ligase, central CLD04_08850 IPR005762 UDP-N-acetylmuramoylalanine-D-glutamate ligase CLD04_08850 IPR036565 Mur-like, catalytic domain superfamily CLD04_08855 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA CLD04_08855 IPR013438 Sporulation stage V, protein E CLD04_08855 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site CLD04_08855 IPR013437 Probable peptidoglycan glycosyltransferase FtsW CLD04_08860 IPR006009 N-acetylglucosaminyltransferase, MurG CLD04_08860 IPR004276 Glycosyltransferase family 28, N-terminal domain CLD04_08860 IPR007235 Glycosyl transferase, family 28, C-terminal CLD04_08865 IPR003170 UDP-N-acetylenolpyruvoylglucosamine reductase CLD04_08865 IPR036318 FAD-binding, type PCMH-like superfamily CLD04_08865 IPR011601 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal CLD04_08865 IPR036635 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain superfamily CLD04_08865 IPR006094 FAD linked oxidase, N-terminal CLD04_08865 IPR016169 FAD-binding, type PCMH, subdomain 2 CLD04_08865 IPR016167 FAD-binding, type PCMH, subdomain 1 CLD04_08865 IPR016166 FAD-binding domain, PCMH-type CLD04_08870 IPR034746 POTRA domain CLD04_08870 IPR026580 Cell division protein DivIB CLD04_08870 IPR013685 POTRA domain, FtsQ-type CLD04_08875 IPR010273 Protein of unknown function DUF881 CLD04_08880 IPR010273 Protein of unknown function DUF881 CLD04_08885 IPR009709 Protein of unknown function DUF1290 CLD04_08890 IPR003494 SHS2 domain inserted in FtsA CLD04_08890 IPR020823 Cell division protein FtsA CLD04_08895 IPR037103 Tubulin/FtsZ, C-terminal domain superfamily CLD04_08895 IPR000158 Cell division protein FtsZ CLD04_08895 IPR018316 Tubulin/FtsZ, 2-layer sandwich domain CLD04_08895 IPR008280 Tubulin/FtsZ, C-terminal CLD04_08895 IPR003008 Tubulin/FtsZ, GTPase domain CLD04_08895 IPR024757 Cell division protein FtsZ, C-terminal CLD04_08895 IPR036525 Tubulin/FtsZ, GTPase domain superfamily CLD04_08895 IPR020805 Cell division protein FtsZ, conserved site CLD04_08900 IPR010071 Amino acid adenylation domain CLD04_08900 IPR036736 ACP-like superfamily CLD04_08900 IPR025110 AMP-binding enzyme, C-terminal domain CLD04_08900 IPR000873 AMP-dependent synthetase/ligase CLD04_08900 IPR042099 AMP-dependent synthetase-like superfamily CLD04_08900 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CLD04_08900 IPR001242 Condensation domain CLD04_08900 IPR010060 Non-ribosomal peptide synthase CLD04_08900 IPR020806 Polyketide synthase, phosphopantetheine-binding domain CLD04_08900 IPR009081 Phosphopantetheine binding ACP domain CLD04_08900 IPR006162 Phosphopantetheine attachment site CLD04_08900 IPR020845 AMP-binding, conserved site CLD04_08905 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CLD04_08905 IPR010060 Non-ribosomal peptide synthase CLD04_08905 IPR020806 Polyketide synthase, phosphopantetheine-binding domain CLD04_08905 IPR009081 Phosphopantetheine binding ACP domain CLD04_08905 IPR006162 Phosphopantetheine attachment site CLD04_08905 IPR036736 ACP-like superfamily CLD04_08905 IPR042099 AMP-dependent synthetase-like superfamily CLD04_08905 IPR020845 AMP-binding, conserved site CLD04_08905 IPR000873 AMP-dependent synthetase/ligase CLD04_08905 IPR010071 Amino acid adenylation domain CLD04_08905 IPR025110 AMP-binding enzyme, C-terminal domain CLD04_08905 IPR001242 Condensation domain CLD04_08910 IPR020845 AMP-binding, conserved site CLD04_08910 IPR036736 ACP-like superfamily CLD04_08910 IPR025110 AMP-binding enzyme, C-terminal domain CLD04_08910 IPR010071 Amino acid adenylation domain CLD04_08910 IPR029058 Alpha/Beta hydrolase fold CLD04_08910 IPR000873 AMP-dependent synthetase/ligase CLD04_08910 IPR042099 AMP-dependent synthetase-like superfamily CLD04_08910 IPR001031 Thioesterase CLD04_08910 IPR006162 Phosphopantetheine attachment site CLD04_08910 IPR009081 Phosphopantetheine binding ACP domain CLD04_08910 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CLD04_08910 IPR001242 Condensation domain CLD04_08910 IPR020802 Polyketide synthase, thioesterase domain CLD04_08910 IPR010060 Non-ribosomal peptide synthase CLD04_08915 IPR025110 AMP-binding enzyme, C-terminal domain CLD04_08915 IPR036736 ACP-like superfamily CLD04_08915 IPR029058 Alpha/Beta hydrolase fold CLD04_08915 IPR010071 Amino acid adenylation domain CLD04_08915 IPR020845 AMP-binding, conserved site CLD04_08915 IPR006162 Phosphopantetheine attachment site CLD04_08915 IPR009081 Phosphopantetheine binding ACP domain CLD04_08915 IPR020802 Polyketide synthase, thioesterase domain CLD04_08915 IPR001031 Thioesterase CLD04_08915 IPR010060 Non-ribosomal peptide synthase CLD04_08915 IPR001242 Condensation domain CLD04_08915 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CLD04_08915 IPR042099 AMP-dependent synthetase-like superfamily CLD04_08915 IPR000873 AMP-dependent synthetase/ligase CLD04_08920 IPR020845 AMP-binding, conserved site CLD04_08920 IPR000873 AMP-dependent synthetase/ligase CLD04_08920 IPR042099 AMP-dependent synthetase-like superfamily CLD04_08920 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CLD04_08920 IPR006162 Phosphopantetheine attachment site CLD04_08920 IPR010060 Non-ribosomal peptide synthase CLD04_08920 IPR020806 Polyketide synthase, phosphopantetheine-binding domain CLD04_08920 IPR025110 AMP-binding enzyme, C-terminal domain CLD04_08920 IPR001242 Condensation domain CLD04_08920 IPR036736 ACP-like superfamily CLD04_08920 IPR009081 Phosphopantetheine binding ACP domain CLD04_08920 IPR010071 Amino acid adenylation domain CLD04_08925 IPR001242 Condensation domain CLD04_08925 IPR009081 Phosphopantetheine binding ACP domain CLD04_08925 IPR006162 Phosphopantetheine attachment site CLD04_08925 IPR001031 Thioesterase CLD04_08925 IPR010060 Non-ribosomal peptide synthase CLD04_08925 IPR010071 Amino acid adenylation domain CLD04_08925 IPR020802 Polyketide synthase, thioesterase domain CLD04_08925 IPR036736 ACP-like superfamily CLD04_08925 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CLD04_08925 IPR042099 AMP-dependent synthetase-like superfamily CLD04_08925 IPR000873 AMP-dependent synthetase/ligase CLD04_08925 IPR025110 AMP-binding enzyme, C-terminal domain CLD04_08925 IPR020845 AMP-binding, conserved site CLD04_08925 IPR029058 Alpha/Beta hydrolase fold CLD04_08930 IPR010071 Amino acid adenylation domain CLD04_08930 IPR029058 Alpha/Beta hydrolase fold CLD04_08930 IPR036736 ACP-like superfamily CLD04_08930 IPR020845 AMP-binding, conserved site CLD04_08930 IPR000873 AMP-dependent synthetase/ligase CLD04_08930 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CLD04_08930 IPR001242 Condensation domain CLD04_08930 IPR010060 Non-ribosomal peptide synthase CLD04_08930 IPR025110 AMP-binding enzyme, C-terminal domain CLD04_08930 IPR042099 AMP-dependent synthetase-like superfamily CLD04_08930 IPR009081 Phosphopantetheine binding ACP domain CLD04_08930 IPR006162 Phosphopantetheine attachment site CLD04_08930 IPR001031 Thioesterase CLD04_08930 IPR020802 Polyketide synthase, thioesterase domain CLD04_08935 IPR029058 Alpha/Beta hydrolase fold CLD04_08935 IPR036736 ACP-like superfamily CLD04_08935 IPR025110 AMP-binding enzyme, C-terminal domain CLD04_08935 IPR020845 AMP-binding, conserved site CLD04_08935 IPR000873 AMP-dependent synthetase/ligase CLD04_08935 IPR042099 AMP-dependent synthetase-like superfamily CLD04_08935 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CLD04_08935 IPR001242 Condensation domain CLD04_08935 IPR010060 Non-ribosomal peptide synthase CLD04_08935 IPR020802 Polyketide synthase, thioesterase domain CLD04_08935 IPR010071 Amino acid adenylation domain CLD04_08935 IPR009081 Phosphopantetheine binding ACP domain CLD04_08935 IPR006162 Phosphopantetheine attachment site CLD04_08935 IPR001031 Thioesterase CLD04_08940 IPR020806 Polyketide synthase, phosphopantetheine-binding domain CLD04_08940 IPR010071 Amino acid adenylation domain CLD04_08940 IPR036736 ACP-like superfamily CLD04_08940 IPR025110 AMP-binding enzyme, C-terminal domain CLD04_08940 IPR020845 AMP-binding, conserved site CLD04_08940 IPR000873 AMP-dependent synthetase/ligase CLD04_08940 IPR042099 AMP-dependent synthetase-like superfamily CLD04_08940 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CLD04_08940 IPR001242 Condensation domain CLD04_08940 IPR009081 Phosphopantetheine binding ACP domain CLD04_08940 IPR006162 Phosphopantetheine attachment site CLD04_08940 IPR010060 Non-ribosomal peptide synthase CLD04_08945 IPR010060 Non-ribosomal peptide synthase CLD04_08945 IPR001242 Condensation domain CLD04_08945 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CLD04_08945 IPR042099 AMP-dependent synthetase-like superfamily CLD04_08945 IPR000873 AMP-dependent synthetase/ligase CLD04_08945 IPR020845 AMP-binding, conserved site CLD04_08945 IPR025110 AMP-binding enzyme, C-terminal domain CLD04_08945 IPR036736 ACP-like superfamily CLD04_08945 IPR010071 Amino acid adenylation domain CLD04_08945 IPR020806 Polyketide synthase, phosphopantetheine-binding domain CLD04_08945 IPR009081 Phosphopantetheine binding ACP domain CLD04_08945 IPR006162 Phosphopantetheine attachment site CLD04_08950 IPR010060 Non-ribosomal peptide synthase CLD04_08950 IPR020845 AMP-binding, conserved site CLD04_08950 IPR025110 AMP-binding enzyme, C-terminal domain CLD04_08950 IPR036736 ACP-like superfamily CLD04_08950 IPR029058 Alpha/Beta hydrolase fold CLD04_08950 IPR010071 Amino acid adenylation domain CLD04_08950 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CLD04_08950 IPR001242 Condensation domain CLD04_08950 IPR020802 Polyketide synthase, thioesterase domain CLD04_08950 IPR009081 Phosphopantetheine binding ACP domain CLD04_08950 IPR000873 AMP-dependent synthetase/ligase CLD04_08950 IPR006162 Phosphopantetheine attachment site CLD04_08950 IPR001031 Thioesterase CLD04_08950 IPR042099 AMP-dependent synthetase-like superfamily CLD04_08955 IPR000873 AMP-dependent synthetase/ligase CLD04_08955 IPR042099 AMP-dependent synthetase-like superfamily CLD04_08955 IPR025110 AMP-binding enzyme, C-terminal domain CLD04_08955 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CLD04_08955 IPR001242 Condensation domain CLD04_08955 IPR010060 Non-ribosomal peptide synthase CLD04_08955 IPR020802 Polyketide synthase, thioesterase domain CLD04_08955 IPR009081 Phosphopantetheine binding ACP domain CLD04_08955 IPR006162 Phosphopantetheine attachment site CLD04_08955 IPR001031 Thioesterase CLD04_08955 IPR020845 AMP-binding, conserved site CLD04_08955 IPR029058 Alpha/Beta hydrolase fold CLD04_08955 IPR036736 ACP-like superfamily CLD04_08955 IPR010071 Amino acid adenylation domain CLD04_08960 IPR010071 Amino acid adenylation domain CLD04_08960 IPR001031 Thioesterase CLD04_08960 IPR006162 Phosphopantetheine attachment site CLD04_08960 IPR009081 Phosphopantetheine binding ACP domain CLD04_08960 IPR020806 Polyketide synthase, phosphopantetheine-binding domain CLD04_08960 IPR029058 Alpha/Beta hydrolase fold CLD04_08960 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CLD04_08960 IPR042099 AMP-dependent synthetase-like superfamily CLD04_08960 IPR000873 AMP-dependent synthetase/ligase CLD04_08960 IPR020845 AMP-binding, conserved site CLD04_08960 IPR025110 AMP-binding enzyme, C-terminal domain CLD04_08960 IPR036736 ACP-like superfamily CLD04_08960 IPR001242 Condensation domain CLD04_08965 IPR009081 Phosphopantetheine binding ACP domain CLD04_08965 IPR020806 Polyketide synthase, phosphopantetheine-binding domain CLD04_08965 IPR001242 Condensation domain CLD04_08965 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CLD04_08965 IPR042099 AMP-dependent synthetase-like superfamily CLD04_08965 IPR025110 AMP-binding enzyme, C-terminal domain CLD04_08965 IPR020845 AMP-binding, conserved site CLD04_08965 IPR036736 ACP-like superfamily CLD04_08965 IPR029058 Alpha/Beta hydrolase fold CLD04_08965 IPR010071 Amino acid adenylation domain CLD04_08965 IPR000873 AMP-dependent synthetase/ligase CLD04_08965 IPR001031 Thioesterase CLD04_08965 IPR006162 Phosphopantetheine attachment site CLD04_08975 IPR010259 Peptidase S8 propeptide/proteinase inhibitor I9 CLD04_08975 IPR015500 Peptidase S8, subtilisin-related CLD04_08975 IPR023828 Peptidase S8, subtilisin, Ser-active site CLD04_08975 IPR022398 Peptidase S8, subtilisin, His-active site CLD04_08975 IPR000209 Peptidase S8/S53 domain CLD04_08975 IPR036852 Peptidase S8/S53 domain superfamily CLD04_08975 IPR013783 Immunoglobulin-like fold CLD04_08975 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily CLD04_08975 IPR008969 Carboxypeptidase-like, regulatory domain superfamily CLD04_08975 IPR033857 Bacillopeptidase F, peptidase domain CLD04_08975 IPR012103 Peptidase S8A, bacillopeptidase F CLD04_08980 IPR005081 Sigma-E processing peptidase SpoIIGA CLD04_08985 IPR013325 RNA polymerase sigma factor, region 2 CLD04_08985 IPR014284 RNA polymerase sigma-70 like domain CLD04_08985 IPR014200 RNA polymerase sigma-E type CLD04_08985 IPR000943 RNA polymerase sigma-70 CLD04_08985 IPR007630 RNA polymerase sigma-70 region 4 CLD04_08985 IPR013324 RNA polymerase sigma factor, region 3/4-like CLD04_08985 IPR007627 RNA polymerase sigma-70 region 2 CLD04_08985 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_08990 IPR014284 RNA polymerase sigma-70 like domain CLD04_08990 IPR007624 RNA polymerase sigma-70 region 3 CLD04_08990 IPR007627 RNA polymerase sigma-70 region 2 CLD04_08990 IPR000943 RNA polymerase sigma-70 CLD04_08990 IPR014212 RNA polymerase sigma-G type CLD04_08990 IPR014322 RNA polymerase sigma-B/F/G type CLD04_08990 IPR013324 RNA polymerase sigma factor, region 3/4-like CLD04_08990 IPR013325 RNA polymerase sigma factor, region 2 CLD04_08990 IPR007630 RNA polymerase sigma-70 region 4 CLD04_08995 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_08995 IPR003593 AAA+ ATPase domain CLD04_08995 IPR003439 ABC transporter-like CLD04_08995 IPR017871 ABC transporter, conserved site CLD04_09000 IPR010182 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase/Succinyl-diaminopimelate desuccinylase CLD04_09000 IPR036264 Bacterial exopeptidase dimerisation domain CLD04_09000 IPR002933 Peptidase M20 CLD04_09000 IPR011650 Peptidase M20, dimerisation domain CLD04_09005 IPR011033 PRC-barrel-like superfamily CLD04_09005 IPR014238 Sporulation protein YlmC/YmxH CLD04_09005 IPR027275 PRC-barrel domain CLD04_09015 IPR029066 PLP-binding barrel CLD04_09015 IPR001608 Alanine racemase, N-terminal CLD04_09015 IPR011078 Pyridoxal phosphate homeostasis protein CLD04_09020 IPR023052 Cell division protein SepF CLD04_09020 IPR038594 SepF-like superfamily CLD04_09020 IPR007561 Cell division protein SepF/SepF-related CLD04_09025 IPR003425 CCB3/YggT CLD04_09030 IPR040591 YlmH, putative RNA-binding domain CLD04_09030 IPR036986 RNA-binding S4 domain superfamily CLD04_09030 IPR002942 RNA-binding S4 domain CLD04_09030 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily CLD04_09035 IPR007793 DivIVA family CLD04_09035 IPR019933 DivIVA domain CLD04_09040 IPR002301 Isoleucine-tRNA ligase CLD04_09040 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CLD04_09040 IPR002300 Aminoacyl-tRNA synthetase, class Ia CLD04_09040 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain CLD04_09040 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding CLD04_09040 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLD04_09040 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding CLD04_09040 IPR023585 Isoleucine-tRNA ligase, type 1 CLD04_09040 IPR033708 Isoleucyl tRNA synthetase type 1, anticodon-binding domain CLD04_09045 IPR000962 Zinc finger, DksA/TraR C4-type CLD04_09045 IPR016841 Transcription regulator DksA-related, predicted CLD04_09045 IPR020458 Zinc finger, DksA/TraR C4-type conserved site CLD04_09050 IPR001872 Peptidase A8, signal peptidase II CLD04_09055 IPR020103 Pseudouridine synthase, catalytic domain superfamily CLD04_09055 IPR036986 RNA-binding S4 domain superfamily CLD04_09055 IPR002942 RNA-binding S4 domain CLD04_09055 IPR006145 Pseudouridine synthase, RsuA/RluA CLD04_09055 IPR006224 Pseudouridine synthase, RluC/RluD, conserved site CLD04_09055 IPR006225 Pseudouridine synthase, RluC/RluD CLD04_09060 IPR000836 Phosphoribosyltransferase domain CLD04_09060 IPR029057 Phosphoribosyltransferase-like CLD04_09060 IPR023050 Bifunctional protein PyrR CLD04_09065 IPR006042 Xanthine/uracil permease CLD04_09065 IPR029935 Uracil permease CLD04_09065 IPR006043 Xanthine/uracil/vitamin C permease CLD04_09070 IPR006130 Aspartate/ornithine carbamoyltransferase CLD04_09070 IPR006131 Aspartate/ornithine carbamoyltransferase, Asp/Orn-binding domain CLD04_09070 IPR036901 Aspartate/ornithine carbamoyltransferase superfamily CLD04_09070 IPR002082 Aspartate carbamoyltransferase CLD04_09070 IPR006132 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding CLD04_09075 IPR006680 Amidohydrolase-related CLD04_09075 IPR032466 Metal-dependent hydrolase CLD04_09075 IPR004722 Dihydroorotase CLD04_09075 IPR002195 Dihydroorotase, conserved site CLD04_09075 IPR011059 Metal-dependent hydrolase, composite domain superfamily CLD04_09080 IPR035686 Carbamoyl-phosphate synthase small subunit, GATase1 domain CLD04_09080 IPR002474 Carbamoyl-phosphate synthase small subunit, N-terminal domain CLD04_09080 IPR036480 Carbamoyl-phosphate synthase small subunit, N-terminal domain superfamily CLD04_09080 IPR029062 Class I glutamine amidotransferase-like CLD04_09080 IPR006274 Carbamoyl-phosphate synthase, small subunit CLD04_09080 IPR017926 Glutamine amidotransferase CLD04_09085 IPR011607 Methylglyoxal synthase-like domain CLD04_09085 IPR036914 Methylglyoxal synthase-like domain superfamily CLD04_09085 IPR005480 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain CLD04_09085 IPR011761 ATP-grasp fold CLD04_09085 IPR036897 Carbamoyl-phosphate synthetase, large subunit oligomerisation domain superfamily CLD04_09085 IPR016185 Pre-ATP-grasp domain superfamily CLD04_09085 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain CLD04_09085 IPR033937 Carbamoyl-phosphate synthase large chain, methylglyoxal synthase-like domain CLD04_09085 IPR005483 Carbamoyl-phosphate synthase large subunit, CPSase domain CLD04_09085 IPR006275 Carbamoyl-phosphate synthase, large subunit CLD04_09090 IPR019480 Dihydroorotate dehydrogenase, electron transfer subunit, iron-sulphur cluster binding domain CLD04_09090 IPR023455 Dihydroorotate dehydrogenase electron transfer subunit CLD04_09090 IPR012165 Cytochrome-c3 hydrogenase, gamma subunit CLD04_09090 IPR037117 Dihydroorotate dehydrogenase, electron transfer subunit, Fe-S binding domain superfamily CLD04_09090 IPR017927 FAD-binding domain, ferredoxin reductase-type CLD04_09090 IPR001433 Oxidoreductase FAD/NAD(P)-binding CLD04_09090 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CLD04_09090 IPR017938 Riboflavin synthase-like beta-barrel CLD04_09095 IPR013785 Aldolase-type TIM barrel CLD04_09095 IPR001295 Dihydroorotate dehydrogenase, conserved site CLD04_09095 IPR012135 Dihydroorotate dehydrogenase, class 1/ 2 CLD04_09095 IPR024920 Dihydroorotate dehydrogenase, class 1 CLD04_09095 IPR005720 Dihydroorotate dehydrogenase domain CLD04_09095 IPR033888 Dihydroorotate dehydrogenase, class 1B CLD04_09100 IPR011060 Ribulose-phosphate binding barrel CLD04_09100 IPR001754 Orotidine 5'-phosphate decarboxylase domain CLD04_09100 IPR014732 Orotidine 5'-phosphate decarboxylase CLD04_09100 IPR013785 Aldolase-type TIM barrel CLD04_09100 IPR018089 Orotidine 5'-phosphate decarboxylase, active site CLD04_09105 IPR000836 Phosphoribosyltransferase domain CLD04_09105 IPR004467 Orotate phosphoribosyl transferase domain CLD04_09105 IPR029057 Phosphoribosyltransferase-like CLD04_09105 IPR023031 Orotate phosphoribosyltransferase CLD04_09110 IPR011798 Adenosine 5'-phosphosulphate reductase CLD04_09110 IPR004511 Phosphoadenosine phosphosulphate/adenosine 5'-phosphosulphate reductase CLD04_09110 IPR002500 Phosphoadenosine phosphosulphate reductase CLD04_09110 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLD04_09115 IPR001204 Phosphate transporter CLD04_09120 IPR025980 ATP-sulfurylase PUA-like domain CLD04_09120 IPR015947 PUA-like superfamily CLD04_09120 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLD04_09120 IPR020792 Sulphate adenylyltransferase, prokaryotic-type CLD04_09120 IPR002650 Sulphate adenylyltransferase CLD04_09120 IPR024951 Sulphate adenylyltransferase catalytic domain CLD04_09125 IPR002891 Adenylyl-sulfate kinase CLD04_09125 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_09130 IPR035996 Tetrapyrrole methylase superfamily CLD04_09130 IPR014776 Tetrapyrrole methylase, subdomain 2 CLD04_09130 IPR003043 Uroporphiryn-III C-methyltransferase, conserved site CLD04_09130 IPR014777 Tetrapyrrole methylase, subdomain 1 CLD04_09130 IPR000878 Tetrapyrrole methylase CLD04_09130 IPR006366 Uroporphyrin-III C-methyltransferase CLD04_09135 IPR002762 Cobalamin (vitamin B12) biosynthesis CbiX CLD04_09140 IPR028161 Siroheme biosynthesis protein Met8 CLD04_09140 IPR036291 NAD(P)-binding domain superfamily CLD04_09140 IPR006367 Sirohaem synthase, N-terminal CLD04_09150 IPR004014 Cation-transporting P-type ATPase, N-terminal CLD04_09150 IPR006068 Cation-transporting P-type ATPase, C-terminal CLD04_09150 IPR023299 P-type ATPase, cytoplasmic domain N CLD04_09150 IPR023214 HAD superfamily CLD04_09150 IPR023298 P-type ATPase, transmembrane domain superfamily CLD04_09150 IPR008250 P-type ATPase, A domain superfamily CLD04_09150 IPR036412 HAD-like superfamily CLD04_09150 IPR005782 P-type ATPase, subfamily IIA, SERCA-type CLD04_09150 IPR001757 P-type ATPase CLD04_09150 IPR018303 P-type ATPase, phosphorylation site CLD04_09155 IPR005229 Conserved hypothetical protein CHP00255 CLD04_09155 IPR013551 Domain of unknown function DUF1732 CLD04_09155 IPR013527 YicC-like, N-terminal CLD04_09160 IPR007169 Extracellular matrix regulatory protein A CLD04_09165 IPR008145 Guanylate kinase/L-type calcium channel beta subunit CLD04_09165 IPR008144 Guanylate kinase-like domain CLD04_09165 IPR017665 Guanylate kinase CLD04_09165 IPR020590 Guanylate kinase, conserved site CLD04_09165 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_09170 IPR036161 RPB6/omega subunit-like superfamily CLD04_09170 IPR012293 RNA polymerase subunit, RPB6/omega CLD04_09170 IPR003716 DNA-directed RNA polymerase, omega subunit CLD04_09170 IPR006110 RNA polymerase, subunit omega/K/RPB6 CLD04_09175 IPR003382 Flavoprotein CLD04_09175 IPR036551 Flavin prenyltransferase-like CLD04_09175 IPR035929 CoaB-like superfamily CLD04_09175 IPR005252 Coenzyme A biosynthesis bifunctional protein CoaBC CLD04_09175 IPR007085 DNA/pantothenate metabolism flavoprotein, C-terminal CLD04_09180 IPR040498 PriA DNA helicase, Cys-rich region (CRR) domain CLD04_09180 IPR041236 Primosomal protein N, C-terminal domain CLD04_09180 IPR042115 Primosomal protein N', 3' DNA-binding domain superfamily CLD04_09180 IPR041222 Primosomal protein N', 3' DNA-binding domain CLD04_09180 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_09180 IPR001650 Helicase, C-terminal CLD04_09180 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLD04_09180 IPR006935 Helicase/UvrB, N-terminal CLD04_09180 IPR005259 Primosomal protein N' CLD04_09185 IPR036821 Peptide deformylase superfamily CLD04_09185 IPR023635 Peptide deformylase CLD04_09190 IPR041711 Methionyl-tRNA formyltransferase, N-terminal domain CLD04_09190 IPR005793 Formyl transferase, C-terminal CLD04_09190 IPR011034 Formyl transferase-like, C-terminal domain superfamily CLD04_09190 IPR037022 Formyl transferase, C-terminal domain superfamily CLD04_09190 IPR002376 Formyl transferase, N-terminal CLD04_09190 IPR005794 Methionyl-tRNA formyltransferase CLD04_09190 IPR001555 Phosphoribosylglycinamide formyltransferase, active site CLD04_09190 IPR036477 Formyl transferase, N-terminal domain superfamily CLD04_09195 IPR023267 RNA (C5-cytosine) methyltransferase CLD04_09195 IPR006027 NusB/RsmB/TIM44 CLD04_09195 IPR035926 NusB-like superfamily CLD04_09195 IPR001678 SAM-dependent methyltransferase RsmB/NOP2-type CLD04_09195 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_09195 IPR004573 rRNA small subunit methyltransferase B CLD04_09195 IPR018314 Bacterial Fmu (Sun)/eukaryotic nucleolar NOL1/Nop2p, conserved site CLD04_09200 IPR040072 Methyltransferase (Class A) CLD04_09200 IPR027492 Dual-specificity RNA methyltransferase RlmN CLD04_09200 IPR004383 Ribosomal RNA large subunit methyltransferase RlmN/Cfr CLD04_09200 IPR007197 Radical SAM CLD04_09200 IPR013785 Aldolase-type TIM barrel CLD04_09205 IPR036457 PPM-type phosphatase domain superfamily CLD04_09205 IPR015655 Protein phosphatase 2C family CLD04_09205 IPR001932 PPM-type phosphatase domain CLD04_09210 IPR008271 Serine/threonine-protein kinase, active site CLD04_09210 IPR017441 Protein kinase, ATP binding site CLD04_09210 IPR000719 Protein kinase domain CLD04_09210 IPR005543 PASTA domain CLD04_09210 IPR011009 Protein kinase-like domain superfamily CLD04_09215 IPR031944 Ribosome biogenesis GTPase RsgA, N-terminal CLD04_09215 IPR010914 RsgA GTPase domain CLD04_09215 IPR004881 Ribosome biogenesis GTPase RsgA CLD04_09215 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_09215 IPR012340 Nucleic acid-binding, OB-fold CLD04_09215 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain CLD04_09220 IPR011060 Ribulose-phosphate binding barrel CLD04_09220 IPR026019 Ribulose-phosphate 3-epimerase CLD04_09220 IPR013785 Aldolase-type TIM barrel CLD04_09220 IPR000056 Ribulose-phosphate 3-epimerase-like CLD04_09225 IPR007373 Thiamin pyrophosphokinase, thiamin-binding domain CLD04_09225 IPR036371 Thiamin pyrophosphokinase, thiamin-binding domain superfamily CLD04_09225 IPR007371 Thiamin pyrophosphokinase, catalytic domain CLD04_09225 IPR036759 Thiamin pyrophosphokinase, catalytic domain superfamily CLD04_09225 IPR006282 Thiamin pyrophosphokinase CLD04_09230 IPR012609 Sporulation stage V, protein M CLD04_09235 IPR034704 L28p-like CLD04_09235 IPR037147 Ribosomal protein L28/L24 superfamily CLD04_09235 IPR001383 Ribosomal protein L28 CLD04_09235 IPR026569 Ribosomal protein L28/L24 CLD04_09240 IPR005531 Alkaline shock protein Asp23 CLD04_09245 IPR033470 Uncharacterised protein, DhaK domain CLD04_09245 IPR036117 DhaL domain superfamily CLD04_09245 IPR004007 DhaL domain CLD04_09245 IPR019986 DAK2 domain-containing protein YloV CLD04_09250 IPR002912 ACT domain CLD04_09250 IPR005131 Serine dehydratase beta chain CLD04_09250 IPR029009 Allosteric substrate binding domain superfamily CLD04_09250 IPR004643 Iron-sulphur-dependent L-serine dehydratase beta subunit CLD04_09255 IPR004642 Serine dehydratase, alpha subunit CLD04_09255 IPR005130 Serine dehydratase-like, alpha subunit CLD04_09260 IPR011545 DEAD/DEAH box helicase domain CLD04_09260 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLD04_09260 IPR001650 Helicase, C-terminal CLD04_09260 IPR004609 ATP-dependent DNA helicase RecG CLD04_09260 IPR012340 Nucleic acid-binding, OB-fold CLD04_09260 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_09260 IPR033454 RecG, wedge domain CLD04_09265 IPR006683 Thioesterase domain CLD04_09265 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_09265 IPR017275 Transcription factor FapR CLD04_09265 IPR029069 HotDog domain superfamily CLD04_09270 IPR012281 Phospholipid biosynthesis protein, PlsX-like CLD04_09270 IPR003664 Fatty acid synthesis PlsX protein CLD04_09275 IPR001227 Acyl transferase domain superfamily CLD04_09275 IPR014043 Acyl transferase CLD04_09275 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase CLD04_09275 IPR024925 Malonyl CoA-acyl carrier protein transacylase CLD04_09275 IPR004410 Malonyl CoA-acyl carrier protein transacylase, FabD-type CLD04_09275 IPR016036 Malonyl-CoA ACP transacylase, ACP-binding CLD04_09280 IPR011284 3-oxoacyl-(acyl-carrier-protein) reductase CLD04_09280 IPR002347 Short-chain dehydrogenase/reductase SDR CLD04_09280 IPR036291 NAD(P)-binding domain superfamily CLD04_09285 IPR006162 Phosphopantetheine attachment site CLD04_09285 IPR009081 Phosphopantetheine binding ACP domain CLD04_09285 IPR003231 Acyl carrier protein (ACP) CLD04_09285 IPR036736 ACP-like superfamily CLD04_09290 IPR011907 Ribonuclease III CLD04_09290 IPR000999 Ribonuclease III domain CLD04_09290 IPR036389 Ribonuclease III, endonuclease domain superfamily CLD04_09290 IPR014720 Double-stranded RNA-binding domain CLD04_09295 IPR003395 RecF/RecN/SMC, N-terminal CLD04_09295 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_09295 IPR011890 Structural maintenance of chromosomes protein, prokaryotic CLD04_09295 IPR036277 SMCs flexible hinge superfamily CLD04_09295 IPR010935 SMCs flexible hinge CLD04_09295 IPR024704 Structural maintenance of chromosomes protein CLD04_09300 IPR004390 Signal-recognition particle receptor FtsY CLD04_09300 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily CLD04_09300 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain CLD04_09300 IPR036225 SRP/SRP receptor, N-terminal CLD04_09300 IPR013822 Signal recognition particle SRP54, helical bundle CLD04_09300 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_09300 IPR003593 AAA+ ATPase domain CLD04_09310 IPR013783 Immunoglobulin-like fold CLD04_09310 IPR003344 Big-1 (bacterial Ig-like domain 1) domain CLD04_09310 IPR008969 Carboxypeptidase-like, regulatory domain superfamily CLD04_09315 IPR013324 RNA polymerase sigma factor, region 3/4-like CLD04_09315 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_09315 IPR007394 Putative helix-turn-helix protein, YlxM/p13-like CLD04_09320 IPR036891 Signal recognition particle, SRP54 subunit, M-domain superfamily CLD04_09320 IPR013822 Signal recognition particle SRP54, helical bundle CLD04_09320 IPR042101 Signal recognition particle SRP54, N-terminal domain superfamily CLD04_09320 IPR022941 Signal recognition particle, SRP54 subunit CLD04_09320 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_09320 IPR004125 Signal recognition particle, SRP54 subunit, M-domain CLD04_09320 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain CLD04_09320 IPR004780 Signal recognition particle protein CLD04_09320 IPR003593 AAA+ ATPase domain CLD04_09325 IPR023803 Ribosomal protein S16 domain superfamily CLD04_09325 IPR000307 Ribosomal protein S16 CLD04_09325 IPR020592 Ribosomal protein S16, conserved site CLD04_09330 IPR020627 Uncharacterised protein family UPF0109 CLD04_09330 IPR009019 K homology domain superfamily, prokaryotic type CLD04_09330 IPR036612 K Homology domain, type 1 superfamily CLD04_09335 IPR021297 YlqD protein CLD04_09340 IPR011961 16S rRNA processing protein RimM CLD04_09340 IPR002676 RimM, N-terminal CLD04_09340 IPR036976 RimM, N-terminal domain superfamily CLD04_09340 IPR027275 PRC-barrel domain CLD04_09340 IPR009000 Translation protein, beta-barrel domain superfamily CLD04_09340 IPR011033 PRC-barrel-like superfamily CLD04_09345 IPR023148 tRNA (guanine-N1-)-methyltransferase, C-terminal CLD04_09345 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CLD04_09345 IPR016009 tRNA methyltransferase TRMD/TRM10-type domain CLD04_09345 IPR029028 Alpha/beta knot methyltransferases CLD04_09345 IPR002649 tRNA (guanine-N1-)-methyltransferase, bacteria CLD04_09350 IPR001857 Ribosomal protein L19 CLD04_09350 IPR018257 Ribosomal protein L19, conserved site CLD04_09350 IPR008991 Translation protein SH3-like domain superfamily CLD04_09350 IPR038657 Ribosomal protein L19 superfamily CLD04_09355 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain CLD04_09355 IPR016478 GTPase, MTG1 CLD04_09355 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_09355 IPR006073 GTP binding domain CLD04_09355 IPR019991 GTP-binding protein, ribosome biogenesis CLD04_09355 IPR023179 GTP-binding protein, orthogonal bundle domain superfamily CLD04_09360 IPR036397 Ribonuclease H superfamily CLD04_09360 IPR012337 Ribonuclease H-like superfamily CLD04_09360 IPR022898 Ribonuclease HII CLD04_09360 IPR001352 Ribonuclease HII/HIII CLD04_09360 IPR024567 Ribonuclease HII/HIII domain CLD04_09370 IPR004683 Type III secretion system substrate exporter FlhB-like CLD04_09370 IPR006135 Type III secretion system substrate exporter CLD04_09370 IPR029025 Type III secretion system substrate exporter, C-terminal CLD04_09375 IPR005811 ATP-citrate lyase/succinyl-CoA ligase CLD04_09375 IPR005809 Succinate--CoA synthetase, beta subunit CLD04_09375 IPR013650 ATP-grasp fold, succinyl-CoA synthetase-type CLD04_09375 IPR011761 ATP-grasp fold CLD04_09375 IPR016102 Succinyl-CoA synthetase-like CLD04_09375 IPR013815 ATP-grasp fold, subdomain 1 CLD04_09375 IPR017866 Succinyl-CoA synthetase, beta subunit, conserved site CLD04_09380 IPR005811 ATP-citrate lyase/succinyl-CoA ligase CLD04_09380 IPR005810 Succinyl-CoA ligase, alpha subunit CLD04_09380 IPR017440 ATP-citrate lyase/succinyl-CoA ligase, active site CLD04_09380 IPR036291 NAD(P)-binding domain superfamily CLD04_09380 IPR016102 Succinyl-CoA synthetase-like CLD04_09380 IPR003781 CoA-binding CLD04_09380 IPR033847 ATP-citrate lyase/succinyl-CoA ligase, conserved site CLD04_09385 IPR003488 DNA recombination-mediator protein A CLD04_09390 IPR013825 DNA topoisomerase, type IA, central region, subdomain 2 CLD04_09390 IPR000380 DNA topoisomerase, type IA CLD04_09390 IPR013498 DNA topoisomerase, type IA, zn finger CLD04_09390 IPR003601 DNA topoisomerase, type IA, domain 2 CLD04_09390 IPR005733 DNA topoisomerase I, bacterial-type CLD04_09390 IPR023405 DNA topoisomerase, type IA, core domain CLD04_09390 IPR028612 DNA topoisomerase I, type IA CLD04_09390 IPR013497 DNA topoisomerase, type IA, central CLD04_09390 IPR034149 DNA topoisomerase 1, TOPRIM domain CLD04_09390 IPR013824 DNA topoisomerase, type IA, central region, subdomain 1 CLD04_09390 IPR013826 DNA topoisomerase, type IA, central region, subdomain 3 CLD04_09390 IPR003602 DNA topoisomerase, type IA, DNA-binding domain CLD04_09390 IPR006171 TOPRIM domain CLD04_09390 IPR023406 DNA topoisomerase, type IA, active site CLD04_09395 IPR020595 MnmG-related, conserved site CLD04_09395 IPR036188 FAD/NAD(P)-binding domain superfamily CLD04_09395 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related CLD04_09395 IPR004417 Methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase TrmFO CLD04_09400 IPR002104 Integrase, catalytic domain CLD04_09400 IPR011010 DNA breaking-rejoining enzyme, catalytic core CLD04_09400 IPR011931 Tyrosine recombinase XerC CLD04_09400 IPR023009 Tyrosine recombinase XerC/XerD CLD04_09400 IPR010998 Integrase/recombinase, N-terminal CLD04_09400 IPR013762 Integrase-like, catalytic domain superfamily CLD04_09400 IPR004107 Integrase, SAM-like, N-terminal CLD04_09405 IPR022281 ATP-dependent protease, HslV subunit CLD04_09405 IPR001353 Proteasome, subunit alpha/beta CLD04_09405 IPR023333 Proteasome B-type subunit CLD04_09405 IPR029055 Nucleophile aminohydrolases, N-terminal CLD04_09410 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_09410 IPR004491 Heat shock protein HslU CLD04_09410 IPR003959 ATPase, AAA-type, core CLD04_09410 IPR003593 AAA+ ATPase domain CLD04_09410 IPR019489 Clp ATPase, C-terminal CLD04_09415 IPR036390 Winged helix DNA-binding domain superfamily CLD04_09415 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_09415 IPR029016 GAF-like domain superfamily CLD04_09415 IPR014154 GTP-sensing transcriptional pleiotropic repressor CodY CLD04_09415 IPR010312 GTP-sensing transcriptional pleiotropic repressor CodY, N-terminal CLD04_09415 IPR013198 GTP-sensing helix-turn-helix, CodY, C-terminal CLD04_09420 IPR019776 Flagellar basal body rod protein, conserved site CLD04_09420 IPR001444 Flagellar basal body rod protein, N-terminal CLD04_09420 IPR006300 Flagellar basal-body rod protein FlgB CLD04_09425 IPR001444 Flagellar basal body rod protein, N-terminal CLD04_09425 IPR019776 Flagellar basal body rod protein, conserved site CLD04_09425 IPR010930 Flagellar basal-body/hook protein, C-terminal domain CLD04_09425 IPR006299 Flagellar basal-body rod protein FlgC CLD04_09430 IPR001624 Flagellar hook-basal body complex protein FliE CLD04_09435 IPR013556 Flagellar M-ring C-terminal CLD04_09435 IPR000067 Flagellar M-ring protein FliF CLD04_09435 IPR006182 Secretory protein YscJ/FliF CLD04_09440 IPR028263 Flagellar motor switch protein FliG, N-terminal domain CLD04_09440 IPR032779 Flagellar motor switch protein FliG, middle domain CLD04_09440 IPR011002 Flagellar motor switch protein FliG, alpha-helical CLD04_09440 IPR023087 Flagellar motor switch protein FliG, C-terminal CLD04_09440 IPR000090 Flagellar motor switch protein FliG CLD04_09445 IPR018035 Flagellar assembly protein FliH/Type III secretion system HrpE CLD04_09445 IPR022524 Flagellar assembly FliH, Bacilli CLD04_09450 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site CLD04_09450 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain CLD04_09450 IPR040627 T3SS EscN ATPase, C-terminal CLD04_09450 IPR005714 ATPase, type III secretion system, FliI/YscN CLD04_09450 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain CLD04_09450 IPR032463 ATPase, type III secretion system, FliI CLD04_09450 IPR000225 Armadillo CLD04_09450 IPR022425 Flagellar export ATPase FliI, clade 2 CLD04_09450 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_09450 IPR003593 AAA+ ATPase domain CLD04_09455 IPR012823 Flagellar export FliJ CLD04_09460 IPR038076 MgtE, N-terminal domain superfamily CLD04_09460 IPR006668 Magnesium transporter, MgtE intracellular domain CLD04_09465 IPR021136 Flagellar hook-length control protein-like, C-terminal CLD04_09465 IPR038610 FliK-like, C-terminal domain superfamily CLD04_09465 IPR001635 Flagellar hook-length control protein FliK CLD04_09470 IPR005648 Flagellar hook capping protein CLD04_09475 IPR019776 Flagellar basal body rod protein, conserved site CLD04_09475 IPR012836 Flagellar basal-body rod FlgF CLD04_09475 IPR001444 Flagellar basal body rod protein, N-terminal CLD04_09475 IPR020013 Flagellar hook-basal body protein, FlgE/F/G CLD04_09475 IPR010930 Flagellar basal-body/hook protein, C-terminal domain CLD04_09475 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like CLD04_09480 IPR009384 Swarming motility protein SwrD-like CLD04_09485 IPR005503 Flagellar basal body-associated protein FliL CLD04_09490 IPR036429 SpoA-like superfamily CLD04_09490 IPR001543 Surface presentation of antigen (SpoA) CLD04_09490 IPR028976 CheC-like superfamily CLD04_09490 IPR001689 Flagellar motor switch protein FliM CLD04_09495 IPR012826 Flagellar motor switch FliN CLD04_09495 IPR001172 Flagellar motor switch FliN/Type III secretion HrcQb CLD04_09495 IPR001543 Surface presentation of antigen (SpoA) CLD04_09495 IPR036429 SpoA-like superfamily CLD04_09495 IPR028976 CheC-like superfamily CLD04_09495 IPR007597 CheC-like protein CLD04_09500 IPR011006 CheY-like superfamily CLD04_09500 IPR001789 Signal transduction response regulator, receiver domain CLD04_09505 IPR022781 Flagellar biosynthesis protein, FliO CLD04_09510 IPR005838 Type III secretion system inner membrane P protein CLD04_09510 IPR005837 Flagellar transport protein FliP CLD04_09515 IPR006305 Flagellar biosynthesis protein FliQ CLD04_09515 IPR002191 Bacterial export protein family 3 CLD04_09520 IPR002010 Type III secretion system inner membrane R protein CLD04_09520 IPR006303 Flagellar biosynthesis protein FliR CLD04_09525 IPR029025 Type III secretion system substrate exporter, C-terminal CLD04_09525 IPR006135 Type III secretion system substrate exporter CLD04_09525 IPR006136 Flagellar biosynthetic protein FlhB CLD04_09530 IPR042194 FHIPEP, domain 1 CLD04_09530 IPR042193 FHIPEP, domain 3 CLD04_09530 IPR042196 FHIPEP, domain 4 CLD04_09530 IPR001712 Type III secretion system FHIPEP CLD04_09530 IPR006301 Flagellar biosynthesis protein FlhA CLD04_09530 IPR025505 FHIPEP conserved site CLD04_09535 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_09535 IPR000897 Signal recognition particle, SRP54 subunit, GTPase domain CLD04_09535 IPR020006 Flagellar biosynthesis protein FlhF CLD04_09540 IPR025501 ATP binding protein MinD CLD04_09540 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_09540 IPR033756 Flagellum site-determining protein YlxH/ Fe-S cluster assembling factor NBP35 CLD04_09545 IPR008248 Protein-glutamate methylesterase/protein-glutamine glutaminase, CheB type CLD04_09545 IPR035909 Methylesterase CheB, C-terminal CLD04_09545 IPR011006 CheY-like superfamily CLD04_09545 IPR000673 Signal transduction response regulator, chemotaxis, protein-glutamate methylesterase CLD04_09545 IPR001789 Signal transduction response regulator, receiver domain CLD04_09550 IPR037006 Histidine kinase CheA-like, homodimeric domain superfamily CLD04_09550 IPR037052 Chemotaxis protein CheA, P2 response regulator-binding domain superfamily CLD04_09550 IPR010808 Chemotaxis protein CheA, P2 response regulator-binding CLD04_09550 IPR036061 CheW-like domain superfamily CLD04_09550 IPR002545 CheW-like domain CLD04_09550 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLD04_09550 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_09550 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_09550 IPR036641 HPT domain superfamily CLD04_09550 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLD04_09550 IPR008207 Signal transduction histidine kinase, phosphotransfer (Hpt) domain CLD04_09550 IPR035891 CheY-binding domain of CheA CLD04_09550 IPR005467 Histidine kinase domain CLD04_09550 IPR004105 Histidine kinase CheA-like, homodimeric domain CLD04_09555 IPR036061 CheW-like domain superfamily CLD04_09555 IPR039315 Chemotaxis protein CheW CLD04_09555 IPR002545 CheW-like domain CLD04_09560 IPR007597 CheC-like protein CLD04_09560 IPR028976 CheC-like superfamily CLD04_09565 IPR011324 Cytotoxic necrotizing factor-like, catalytic CLD04_09565 IPR038592 CheD-like superfamily CLD04_09565 IPR005659 Chemoreceptor glutamine deamidase CheD CLD04_09570 IPR012845 RNA polymerase sigma factor, FliA/WhiG CLD04_09570 IPR000943 RNA polymerase sigma-70 CLD04_09570 IPR007627 RNA polymerase sigma-70 region 2 CLD04_09570 IPR007624 RNA polymerase sigma-70 region 3 CLD04_09570 IPR007630 RNA polymerase sigma-70 region 4 CLD04_09570 IPR013325 RNA polymerase sigma factor, region 2 CLD04_09570 IPR013324 RNA polymerase sigma factor, region 3/4-like CLD04_09570 IPR014284 RNA polymerase sigma-70 like domain CLD04_09580 IPR018130 Ribosomal protein S2, conserved site CLD04_09580 IPR005706 Ribosomal protein S2, bacteria/mitochondria/plastid CLD04_09580 IPR001865 Ribosomal protein S2 CLD04_09580 IPR023591 Ribosomal protein S2, flavodoxin-like domain superfamily CLD04_09585 IPR009060 UBA-like superfamily CLD04_09585 IPR018101 Translation elongation factor Ts, conserved site CLD04_09585 IPR014039 Translation elongation factor EFTs/EF1B, dimerisation CLD04_09585 IPR001816 Translation elongation factor EFTs/EF1B CLD04_09585 IPR036402 Elongation factor Ts, dimerisation domain superfamily CLD04_09590 IPR001048 Aspartate/glutamate/uridylate kinase CLD04_09590 IPR036393 Acetylglutamate kinase-like superfamily CLD04_09590 IPR011817 Uridylate kinase CLD04_09590 IPR015963 Uridylate kinase, bacteria CLD04_09595 IPR036191 RRF superfamily CLD04_09595 IPR002661 Ribosome recycling factor CLD04_09595 IPR023584 Ribosome recycling factor domain CLD04_09600 IPR001441 Decaprenyl diphosphate synthase-like CLD04_09600 IPR018520 Di-trans-poly-cis-decaprenylcistransferase-like, conserved site CLD04_09600 IPR036424 Decaprenyl diphosphate synthase-like superfamily CLD04_09605 IPR000374 Phosphatidate cytidylyltransferase CLD04_09610 IPR003821 1-deoxy-D-xylulose 5-phosphate reductoisomerase CLD04_09610 IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase, C-terminal CLD04_09610 IPR036291 NAD(P)-binding domain superfamily CLD04_09610 IPR036169 DXP reductoisomerase, C-terminal domain superfamily CLD04_09610 IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase, N-terminal CLD04_09610 IPR026877 DXP reductoisomerase C-terminal domain CLD04_09615 IPR036034 PDZ superfamily CLD04_09615 IPR008915 Peptidase M50 CLD04_09615 IPR004387 Peptidase M50, putative membrane-associated zinc metallopeptidase CLD04_09615 IPR041489 PDZ domain 6 CLD04_09615 IPR001478 PDZ domain CLD04_09620 IPR006195 Aminoacyl-tRNA synthetase, class II CLD04_09620 IPR033730 Prokaryote proline-tRNA ligase core domain CLD04_09620 IPR036621 Anticodon-binding domain superfamily CLD04_09620 IPR002316 Proline-tRNA ligase, class IIa CLD04_09620 IPR004154 Anticodon-binding CLD04_09620 IPR036754 YbaK/aminoacyl-tRNA synthetase-associated domain superfamily CLD04_09620 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) CLD04_09620 IPR004500 Prolyl-tRNA synthetase, class IIa, bacterial-type CLD04_09620 IPR007214 YbaK/aminoacyl-tRNA synthetase-associated domain CLD04_09620 IPR023717 Prolyl-tRNA synthetase, class IIa, type 1 CLD04_09625 IPR029460 DNA polymerase, helix-hairpin-helix motif CLD04_09625 IPR028112 DNA polymerase III polC-type, N-terminal domain I CLD04_09625 IPR024754 DNA polymerase III polC-like, N-terminal domain II CLD04_09625 IPR013520 Exonuclease, RNase T/DNA polymerase III CLD04_09625 IPR040982 DNA polymerase III alpha subunit finger domain CLD04_09625 IPR012340 Nucleic acid-binding, OB-fold CLD04_09625 IPR004013 PHP domain CLD04_09625 IPR003141 Polymerase/histidinol phosphatase, N-terminal CLD04_09625 IPR006308 DNA polymerase III, alpha subunit, Gram-positive type CLD04_09625 IPR012337 Ribonuclease H-like superfamily CLD04_09625 IPR036397 Ribonuclease H superfamily CLD04_09625 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain CLD04_09625 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain CLD04_09630 IPR035956 RimP, N-terminal domain superfamily CLD04_09630 IPR028989 Ribosome maturation factor RimP, N-terminal CLD04_09630 IPR036847 Ribosome maturation factor RimP, C-terminal domain superfamily CLD04_09630 IPR028998 Ribosome maturation factor RimP, C-terminal CLD04_09630 IPR003728 Ribosome maturation factor RimP CLD04_09635 IPR010213 Transcription termination factor NusA CLD04_09635 IPR003029 S1 domain CLD04_09635 IPR022967 RNA-binding domain, S1 CLD04_09635 IPR036555 NusA, N-terminal domain superfamily CLD04_09635 IPR030842 Transcription termination/antitermination protein NusA, bacterial CLD04_09635 IPR012340 Nucleic acid-binding, OB-fold CLD04_09635 IPR009019 K homology domain superfamily, prokaryotic type CLD04_09635 IPR025249 KH domain, NusA-like CLD04_09635 IPR015946 K homology domain-like, alpha/beta CLD04_09635 IPR004087 K Homology domain CLD04_09635 IPR013735 Transcription factor NusA, N-terminal CLD04_09640 IPR007393 Domain of unknown function DUF448 CLD04_09640 IPR037465 Uncharacterized protein YlxR CLD04_09640 IPR035931 YlxR-like superfamily CLD04_09645 IPR039109 Ribosomal protein L30/YlxQ CLD04_09645 IPR029064 50S ribosomal protein L30e-like CLD04_09645 IPR039107 Ribosomal protein YlxQ CLD04_09645 IPR004037 Ribosomal protein L7Ae conserved site CLD04_09645 IPR004038 Ribosomal protein L7Ae/L30e/S12e/Gadd45 CLD04_09650 IPR009000 Translation protein, beta-barrel domain superfamily CLD04_09650 IPR036925 Translation initiation factor IF-2, domain 3 superfamily CLD04_09650 IPR023115 Translation initiation factor IF- 2, domain 3 CLD04_09650 IPR015760 Translation initiation factor IF- 2 CLD04_09650 IPR006847 Translation initiation factor IF-2, N-terminal CLD04_09650 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_09650 IPR005225 Small GTP-binding protein domain CLD04_09650 IPR000795 Transcription factor, GTP-binding domain CLD04_09650 IPR000178 Translation initiation factor aIF-2, bacterial-like CLD04_09655 IPR036746 TT1725-like superfamily CLD04_09655 IPR007546 Protein of unknown function DUF503 CLD04_09660 IPR015946 K homology domain-like, alpha/beta CLD04_09660 IPR000238 Ribosome-binding factor A CLD04_09660 IPR023799 Ribosome-binding factor A domain superfamily CLD04_09660 IPR020053 Ribosome-binding factor A, conserved site CLD04_09665 IPR032819 tRNA pseudouridylate synthase B, C-terminal CLD04_09665 IPR014780 tRNA pseudouridine synthase II, TruB CLD04_09665 IPR020103 Pseudouridine synthase, catalytic domain superfamily CLD04_09665 IPR002501 Pseudouridine synthase II, N-terminal CLD04_09670 IPR004821 Cytidyltransferase-like domain CLD04_09670 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLD04_09670 IPR023465 Riboflavin kinase domain superfamily CLD04_09670 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic CLD04_09670 IPR015864 FAD synthetase CLD04_09670 IPR023468 Riboflavin kinase CLD04_09670 IPR002606 Riboflavin kinase, bacterial CLD04_09675 IPR000589 Ribosomal protein S15 CLD04_09675 IPR009068 S15/NS1, RNA-binding CLD04_09675 IPR005290 Ribosomal protein S15, bacterial-type CLD04_09680 IPR022967 RNA-binding domain, S1 CLD04_09680 IPR003029 S1 domain CLD04_09680 IPR020568 Ribosomal protein S5 domain 2-type fold CLD04_09680 IPR015848 Polyribonucleotide nucleotidyltransferase, RNA-binding domain CLD04_09680 IPR027408 PNPase/RNase PH domain superfamily CLD04_09680 IPR001247 Exoribonuclease, phosphorolytic domain 1 CLD04_09680 IPR004088 K Homology domain, type 1 CLD04_09680 IPR036345 Exoribonuclease, PH domain 2 superfamily CLD04_09680 IPR004087 K Homology domain CLD04_09680 IPR015847 Exoribonuclease, phosphorolytic domain 2 CLD04_09680 IPR036612 K Homology domain, type 1 superfamily CLD04_09680 IPR012340 Nucleic acid-binding, OB-fold CLD04_09680 IPR012162 Polyribonucleotide nucleotidyltransferase CLD04_09685 IPR010916 TonB box, conserved site CLD04_09685 IPR014228 Sporulation protein, polysaccharide deacetylase, YlxY CLD04_09685 IPR002509 NodB homology domain CLD04_09685 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel CLD04_09690 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like CLD04_09690 IPR011765 Peptidase M16, N-terminal CLD04_09690 IPR001431 Peptidase M16, zinc-binding site CLD04_09690 IPR007863 Peptidase M16, C-terminal CLD04_09695 IPR011033 PRC-barrel-like superfamily CLD04_09695 IPR027275 PRC-barrel domain CLD04_09695 IPR014238 Sporulation protein YlmC/YmxH CLD04_09700 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain CLD04_09700 IPR036291 NAD(P)-binding domain superfamily CLD04_09700 IPR014215 Dipicolinic acid synthetase subunit A CLD04_09700 IPR031629 Dipicolinate synthase subunit A, N-terminal CLD04_09705 IPR003382 Flavoprotein CLD04_09705 IPR036551 Flavin prenyltransferase-like CLD04_09705 IPR014214 Dipicolinic acid synthetase, subunit B CLD04_09710 IPR036291 NAD(P)-binding domain superfamily CLD04_09710 IPR005986 Aspartate-semialdehyde dehydrogenase, beta-type CLD04_09710 IPR012280 Semialdehyde dehydrogenase, dimerisation domain CLD04_09710 IPR000534 Semialdehyde dehydrogenase, NAD-binding CLD04_09710 IPR012080 Aspartate-semialdehyde dehydrogenase CLD04_09710 IPR000319 Aspartate-semialdehyde dehydrogenase, conserved site CLD04_09715 IPR005260 Aspartate kinase, monofunctional class CLD04_09715 IPR001341 Aspartate kinase CLD04_09715 IPR036393 Acetylglutamate kinase-like superfamily CLD04_09715 IPR018042 Aspartate kinase, conserved site CLD04_09715 IPR027795 CASTOR, ACT domain CLD04_09715 IPR001048 Aspartate/glutamate/uridylate kinase CLD04_09715 IPR002912 ACT domain CLD04_09720 IPR005263 4-hydroxy-tetrahydrodipicolinate synthase, DapA CLD04_09720 IPR002220 DapA-like CLD04_09720 IPR020625 Schiff base-forming aldolase, active site CLD04_09720 IPR020624 Schiff base-forming aldolase, conserved site CLD04_09720 IPR013785 Aldolase-type TIM barrel CLD04_09725 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLD04_09725 IPR001279 Metallo-beta-lactamase CLD04_09725 IPR004613 Ribonuclease J CLD04_09725 IPR042173 Ribonuclease J, domain 2 CLD04_09725 IPR030854 Ribonuclease J, bacteria CLD04_09725 IPR011108 Zn-dependent metallo-hydrolase, RNA specificity domain CLD04_09725 IPR041636 Ribonuclease J, C-terminal CLD04_09730 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA CLD04_09730 IPR029045 ClpP/crotonase-like domain superfamily CLD04_09735 IPR025619 YlzJ-like protein CLD04_09740 IPR003593 AAA+ ATPase domain CLD04_09740 IPR041027 FtsK alpha domain CLD04_09740 IPR002543 FtsK domain CLD04_09740 IPR018541 FtsK gamma domain CLD04_09740 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_09740 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_09740 IPR036390 Winged helix DNA-binding domain superfamily CLD04_09745 IPR011663 UbiC transcription regulator-associated CLD04_09745 IPR000524 Transcription regulator HTH, GntR CLD04_09745 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily CLD04_09745 IPR036390 Winged helix DNA-binding domain superfamily CLD04_09745 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_09750 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG CLD04_09750 IPR011701 Major facilitator superfamily CLD04_09750 IPR020846 Major facilitator superfamily domain CLD04_09750 IPR036259 MFS transporter superfamily CLD04_09755 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like CLD04_09755 IPR007863 Peptidase M16, C-terminal CLD04_09760 IPR007863 Peptidase M16, C-terminal CLD04_09760 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like CLD04_09760 IPR011765 Peptidase M16, N-terminal CLD04_09765 IPR002347 Short-chain dehydrogenase/reductase SDR CLD04_09765 IPR036291 NAD(P)-binding domain superfamily CLD04_09770 IPR038292 YmfJ/YflH superfamily CLD04_09770 IPR021637 Protein of unknown function DUF3243 CLD04_09770 IPR024702 Uncharacterised conserved protein YmfJ CLD04_09775 IPR024514 Domain of unknown function DUF3388 CLD04_09775 IPR016784 Uncharacterised protein UCP021288 with ACT domain CLD04_09775 IPR002912 ACT domain CLD04_09780 IPR025194 Domain of unknown function DUF4115 CLD04_09780 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLD04_09785 IPR004570 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase CLD04_09785 IPR000462 CDP-alcohol phosphatidyltransferase CLD04_09790 IPR041424 CinA, KH domain CLD04_09790 IPR008135 Competence-induced protein CinA CLD04_09790 IPR036653 CinA-like, C-terminal CLD04_09790 IPR036425 MoaB/Mog-like domain superfamily CLD04_09790 IPR001453 MoaB/Mog domain CLD04_09790 IPR008136 CinA, C-terminal CLD04_09795 IPR003593 AAA+ ATPase domain CLD04_09795 IPR020587 DNA recombination and repair protein RecA, monomer-monomer interface CLD04_09795 IPR023400 DNA recombination and repair protein RecA, C-terminal CLD04_09795 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_09795 IPR013765 DNA recombination and repair protein RecA CLD04_09795 IPR020588 DNA recombination and repair protein RecA-like, ATP-binding domain CLD04_09795 IPR020584 DNA recombination/repair protein RecA, conserved site CLD04_09800 IPR012338 Beta-lactamase/transpeptidase-like CLD04_09800 IPR001466 Beta-lactamase-related CLD04_09805 IPR006674 HD domain CLD04_09805 IPR006675 HDIG domain CLD04_09805 IPR004087 K Homology domain CLD04_09805 IPR036612 K Homology domain, type 1 superfamily CLD04_09805 IPR017705 Ribonuclease Y CLD04_09805 IPR022711 Ribonuclease Y, N-terminal CLD04_09805 IPR003607 HD/PDEase domain CLD04_09805 IPR004088 K Homology domain, type 1 CLD04_09810 IPR005235 Metallophosphoesterase, YmdB-like CLD04_09810 IPR029052 Metallo-dependent phosphatase-like CLD04_09815 IPR007347 Sporulation stage V, protein S CLD04_09815 IPR036882 Alba-like domain superfamily CLD04_09820 IPR013149 Alcohol dehydrogenase, C-terminal CLD04_09820 IPR013154 Alcohol dehydrogenase, N-terminal CLD04_09820 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site CLD04_09820 IPR011032 GroES-like superfamily CLD04_09820 IPR004627 L-threonine 3-dehydrogenase CLD04_09820 IPR036291 NAD(P)-binding domain superfamily CLD04_09820 IPR020843 Polyketide synthase, enoylreductase domain CLD04_09825 IPR004839 Aminotransferase, class I/classII CLD04_09825 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site CLD04_09825 IPR010962 Putative 8-amino-7-oxononanoate synthase, Archaea/Firmicutes type CLD04_09825 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type CLD04_09825 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_09825 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_09825 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_09830 IPR020612 Methylthiotransferase, conserved site CLD04_09830 IPR013848 Methylthiotransferase, N-terminal CLD04_09830 IPR006638 Elp3/MiaB/NifB CLD04_09830 IPR002792 TRAM domain CLD04_09830 IPR007197 Radical SAM CLD04_09830 IPR006463 tRNA-2-methylthio-N(6)-dimethylallyladenosine synthase MiaB CLD04_09830 IPR005839 Methylthiotransferase CLD04_09830 IPR023404 Radical SAM, alpha/beta horseshoe CLD04_09830 IPR038135 Methylthiotransferase, N-terminal domain superfamily CLD04_09835 IPR016783 Biofilm formation YmcA CLD04_09835 IPR023378 YheA/YmcA-like domain superfamily CLD04_09835 IPR010368 Control of competence regulator ComK, YlbF/YmcA CLD04_09840 IPR018901 Spore coat protein CotE CLD04_09845 IPR016151 DNA mismatch repair protein MutS, N-terminal CLD04_09845 IPR005748 DNA mismatch repair protein MutS CLD04_09845 IPR007695 DNA mismatch repair protein MutS-like, N-terminal CLD04_09845 IPR036678 MutS, connector domain superfamily CLD04_09845 IPR007860 DNA mismatch repair protein MutS, connector domain CLD04_09845 IPR007696 DNA mismatch repair protein MutS, core CLD04_09845 IPR036187 DNA mismatch repair protein MutS, core domain superfamily CLD04_09845 IPR007861 DNA mismatch repair protein MutS, clamp CLD04_09845 IPR000432 DNA mismatch repair protein MutS, C-terminal CLD04_09845 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_09845 IPR017261 DNA mismatch repair protein MutS/MSH CLD04_09850 IPR042121 MutL, C-terminal domain, regulatory subdomain CLD04_09850 IPR013507 DNA mismatch repair protein, S5 domain 2-like CLD04_09850 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_09850 IPR038973 DNA mismatch repair protein MutL/Mlh/Pms CLD04_09850 IPR014790 MutL, C-terminal, dimerisation CLD04_09850 IPR042120 MutL, C-terminal domain, dimerisation subdomain CLD04_09850 IPR014762 DNA mismatch repair, conserved site CLD04_09850 IPR037198 MutL, C-terminal domain superfamily CLD04_09850 IPR020667 DNA mismatch repair protein, MutL CLD04_09850 IPR020568 Ribosomal protein S5 domain 2-type fold CLD04_09850 IPR002099 DNA mismatch repair protein family, N-terminal CLD04_09850 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLD04_09855 IPR025912 Regulatory protein YrvL CLD04_09865 IPR023772 DNA-binding HTH domain, TetR-type, conserved site CLD04_09865 IPR001647 DNA-binding HTH domain, TetR-type CLD04_09865 IPR009057 Homeobox-like domain superfamily CLD04_09865 IPR039538 BetI-type transcriptional repressor, C-terminal CLD04_09865 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CLD04_09875 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLD04_09875 IPR001279 Metallo-beta-lactamase CLD04_09880 IPR023827 Peptidase S8, subtilisin, Asp-active site CLD04_09880 IPR022398 Peptidase S8, subtilisin, His-active site CLD04_09880 IPR023828 Peptidase S8, subtilisin, Ser-active site CLD04_09880 IPR036852 Peptidase S8/S53 domain superfamily CLD04_09880 IPR000209 Peptidase S8/S53 domain CLD04_09880 IPR015500 Peptidase S8, subtilisin-related CLD04_09890 IPR008585 Poly-gamma-glutamate hydrolase CLD04_09890 IPR038128 Poly-gamma-glutamate hydrolase superfamily CLD04_09895 IPR015946 K homology domain-like, alpha/beta CLD04_09895 IPR019905 Peroxiredoxin OsmC-like protein, Firmicutes CLD04_09895 IPR003718 OsmC/Ohr family CLD04_09895 IPR036102 OsmC/Ohr superfamily CLD04_09900 IPR000390 Small multidrug resistance protein family CLD04_09905 IPR000390 Small multidrug resistance protein family CLD04_09915 IPR024307 YmaF CLD04_09920 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_09920 IPR018022 IPP transferase CLD04_09920 IPR039657 Dimethylallyltransferase CLD04_09925 IPR005001 RNA-binding protein Hfq CLD04_09925 IPR010920 LSM domain superfamily CLD04_09930 IPR025448 YmzC-like protein CLD04_09940 IPR020852 Ribonucleotide reductase, class Ib, NrdI, bacterial CLD04_09940 IPR029039 Flavoprotein-like superfamily CLD04_09940 IPR004465 Ribonucleotide reductase Class Ib, NrdI CLD04_09945 IPR013346 Ribonucleotide reductase, class I , alpha subunit CLD04_09945 IPR026459 Ribonucleotide reductase, class 1b, subunit NrdE CLD04_09945 IPR000788 Ribonucleotide reductase large subunit, C-terminal CLD04_09945 IPR013509 Ribonucleotide reductase large subunit, N-terminal CLD04_09945 IPR013554 Ribonucleotide reductase N-terminal CLD04_09945 IPR008926 Ribonucleotide reductase R1 subunit, N-terminal CLD04_09945 IPR039718 Ribonucleoside-diphosphate reductase large subunit CLD04_09950 IPR000358 Ribonucleotide reductase small subunit family CLD04_09950 IPR033909 Ribonucleotide reductase small subunit CLD04_09950 IPR012348 Ribonucleotide reductase-like CLD04_09950 IPR030475 Ribonucleotide reductase small subunit, acitve site CLD04_09950 IPR009078 Ferritin-like superfamily CLD04_09950 IPR026494 Ribonucleoside reductase subunit beta, NrdF CLD04_09955 IPR015797 NUDIX hydrolase-like domain superfamily CLD04_09960 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain CLD04_09960 IPR007730 Sporulation-like domain CLD04_09960 IPR036680 Sporulation-like domain superfamily CLD04_09970 IPR014232 Sporulation stage V, protein K CLD04_09970 IPR041627 CbbX, AAA lid domain CLD04_09970 IPR003593 AAA+ ATPase domain CLD04_09970 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_09970 IPR000641 CbxX/CfxQ CLD04_09970 IPR003959 ATPase, AAA-type, core CLD04_09975 IPR006073 GTP binding domain CLD04_09975 IPR032305 GTP-binding protein, middle domain CLD04_09975 IPR030394 HflX-type guanine nucleotide-binding (G) domain CLD04_09975 IPR042108 GTPase HflX, N-terminal domain superfamily CLD04_09975 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_09975 IPR025121 GTPase HflX, N-terminal CLD04_09975 IPR016496 GTPase HflX CLD04_09980 IPR009651 Putative methionine gamma-lyase CLD04_09980 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_09980 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_09985 IPR009061 Putative DNA-binding domain superfamily CLD04_09985 IPR000551 MerR-type HTH domain CLD04_09990 IPR027303 Glutamine synthetase, glycine-rich site CLD04_09990 IPR004809 Glutamine synthetase type I CLD04_09990 IPR001637 Glutamine synthetase class-I, adenylation site CLD04_09990 IPR008146 Glutamine synthetase, catalytic domain CLD04_09990 IPR027302 Glutamine synthetase, N-terminal conserved site CLD04_09990 IPR008147 Glutamine synthetase, beta-Grasp domain CLD04_09990 IPR014746 Glutamine synthetase/guanido kinase, catalytic domain CLD04_09990 IPR036651 Glutamine synthetase, N-terminal domain superfamily CLD04_10000 IPR041129 CdiI immunity protein CLD04_10010 IPR026834 LHH CLD04_10010 IPR006829 LXG domain CLD04_10040 IPR018958 Knr4/Smi1-like domain CLD04_10040 IPR037883 Knr4/Smi1-like domain superfamily CLD04_10055 IPR016181 Acyl-CoA N-acyltransferase CLD04_10055 IPR000182 GNAT domain CLD04_10090 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLD04_10090 IPR001387 Cro/C1-type helix-turn-helix domain CLD04_10095 IPR024976 Domain of unknown function DUF3885 CLD04_10120 IPR018043 Sodium:galactoside symporter, conserved site CLD04_10120 IPR039672 Lactose permease-like CLD04_10120 IPR001927 Sodium:galactoside symporter CLD04_10120 IPR036259 MFS transporter superfamily CLD04_10120 IPR020846 Major facilitator superfamily domain CLD04_10125 IPR006710 Glycoside hydrolase, family 43 CLD04_10125 IPR041542 Beta-xylosidase, C-terminal Concanavalin A-like domain CLD04_10125 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily CLD04_10125 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily CLD04_10130 IPR000600 ROK family CLD04_10130 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_10130 IPR036390 Winged helix DNA-binding domain superfamily CLD04_10135 IPR013022 Xylose isomerase-like, TIM barrel domain CLD04_10135 IPR036237 Xylose isomerase-like superfamily CLD04_10135 IPR013452 Xylose isomerase, bacterial-type CLD04_10135 IPR001998 Xylose isomerase CLD04_10140 IPR006000 Xylulokinase CLD04_10140 IPR018485 Carbohydrate kinase, FGGY, C-terminal CLD04_10140 IPR018484 Carbohydrate kinase, FGGY, N-terminal CLD04_10140 IPR018483 Carbohydrate kinase, FGGY, conserved site CLD04_10140 IPR000577 Carbohydrate kinase, FGGY CLD04_10155 IPR002071 Thermonuclease active site CLD04_10155 IPR016071 Staphylococcal nuclease (SNase-like), OB-fold CLD04_10155 IPR035437 SNase-like, OB-fold superfamily CLD04_10160 IPR020846 Major facilitator superfamily domain CLD04_10160 IPR005828 Major facilitator, sugar transporter-like CLD04_10160 IPR036259 MFS transporter superfamily CLD04_10160 IPR003663 Sugar/inositol transporter CLD04_10160 IPR005829 Sugar transporter, conserved site CLD04_10165 IPR000821 Alanine racemase CLD04_10165 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal CLD04_10165 IPR011079 Alanine racemase, C-terminal CLD04_10165 IPR001608 Alanine racemase, N-terminal CLD04_10165 IPR020622 Alanine racemase, pyridoxal-phosphate attachment site CLD04_10165 IPR029066 PLP-binding barrel CLD04_10170 IPR020216 Uncharacterised protein family, YncE CLD04_10175 IPR008181 Deoxyuridine triphosphate nucleotidohydrolase CLD04_10175 IPR036157 dUTPase-like superfamily CLD04_10175 IPR029054 dUTPase-like CLD04_10175 IPR033704 dUTPase, trimeric CLD04_10190 IPR000398 Thymidylate synthase CLD04_10190 IPR020940 Thymidylate synthase, active site CLD04_10190 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily CLD04_10190 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain CLD04_10210 IPR029143 Protein of unknown function, YrpD CLD04_10210 IPR038682 YrpD-like superfamily CLD04_10215 IPR025621 YoqO-like protein CLD04_10225 IPR006312 Sec-independent protein translocase protein TatA/E CLD04_10225 IPR003369 Sec-independent protein translocase protein TatA/B/E CLD04_10235 IPR023393 START-like domain superfamily CLD04_10235 IPR013538 Activator of Hsp90 ATPase homologue 1-like CLD04_10245 IPR004995 Bacillus/Clostridium Ger spore germination protein CLD04_10250 IPR004761 Spore germination GerAB CLD04_10265 IPR025311 Domain of unknown function DUF4166 CLD04_10270 IPR025450 YndJ-like protein CLD04_10280 IPR038128 Poly-gamma-glutamate hydrolase superfamily CLD04_10280 IPR008585 Poly-gamma-glutamate hydrolase CLD04_10285 IPR019649 Protein of unknown function DUF2512 CLD04_10290 IPR022858 Metallothiol transferase FosB CLD04_10290 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CLD04_10290 IPR037523 Vicinal oxygen chelate (VOC) domain CLD04_10290 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CLD04_10300 IPR006200 Transcription regulator LexA CLD04_10300 IPR006197 Peptidase S24, LexA-like CLD04_10300 IPR006199 LexA repressor, DNA-binding domain CLD04_10300 IPR036286 LexA/Signal peptidase-like superfamily CLD04_10300 IPR015927 Peptidase S24/S26A/S26B/S26C CLD04_10300 IPR036390 Winged helix DNA-binding domain superfamily CLD04_10300 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_10300 IPR011991 ArsR-like helix-turn-helix domain CLD04_10300 IPR039418 LexA-like CLD04_10305 IPR036779 LysM domain superfamily CLD04_10305 IPR022887 Cell division suppressor protein, YneA CLD04_10305 IPR018392 LysM domain CLD04_10310 IPR006119 Resolvase, N-terminal catalytic domain CLD04_10310 IPR036162 Resolvase-like, N-terminal catalytic domain superfamily CLD04_10315 IPR009242 Protein of unknown function DUF896 CLD04_10320 IPR005474 Transketolase, N-terminal CLD04_10320 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II CLD04_10320 IPR005478 Transketolase, bacterial-like CLD04_10320 IPR020826 Transketolase binding site CLD04_10320 IPR033248 Transketolase, C-terminal domain CLD04_10320 IPR033247 Transketolase family CLD04_10320 IPR029061 Thiamin diphosphate-binding fold CLD04_10320 IPR005475 Transketolase-like, pyrimidine-binding domain CLD04_10325 IPR019683 Sporulation inhibitor of replication protein SirA CLD04_10325 IPR038449 SirA superfamily CLD04_10330 IPR005359 Protein with unknown function UPF0154 CLD04_10335 IPR018540 Aspartyl-phosphate phosphatase Spo0E-like CLD04_10335 IPR037208 Aspartyl-phosphate phosphatase Spo0E-like superfamily CLD04_10340 IPR003834 Cytochrome C biogenesis protein, transmembrane domain CLD04_10345 IPR011006 CheY-like superfamily CLD04_10345 IPR001789 Signal transduction response regulator, receiver domain CLD04_10350 IPR031306 CcdC protein CLD04_10355 IPR020203 Uncharacterised protein family, YneK CLD04_10360 IPR008978 HSP20-like chaperone CLD04_10365 IPR012614 Small acid-soluble spore protein, SspP CLD04_10370 IPR012613 Small acid-soluble spore protein, SspO CLD04_10375 IPR036008 Aconitase, iron-sulfur domain CLD04_10375 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 CLD04_10375 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain CLD04_10375 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel CLD04_10375 IPR006249 Aconitase/Iron-responsive element-binding protein 2 CLD04_10375 IPR018136 Aconitase family, 4Fe-4S cluster binding site CLD04_10375 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain CLD04_10380 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant CLD04_10380 IPR036249 Thioredoxin-like superfamily CLD04_10380 IPR013766 Thioredoxin domain CLD04_10385 IPR025004 Transcriptional regulatory protein SenN/SenS CLD04_10390 IPR012612 Small acid-soluble spore protein, SspN CLD04_10395 IPR017524 Small acid-soluble spore protein, thioredoxin-like CLD04_10400 IPR006684 Acyl-CoA thioester hydrolase YbgC/YbaW family CLD04_10400 IPR029069 HotDog domain superfamily CLD04_10400 IPR006683 Thioesterase domain CLD04_10410 IPR000361 FeS cluster biogenesis CLD04_10410 IPR035903 HesB-like domain superfamily CLD04_10410 IPR008326 Uncharacterised conserved protein UCP034852 CLD04_10415 IPR003811 Glycerol-3-phosphate acyltransferase, PlsY CLD04_10420 IPR036291 NAD(P)-binding domain superfamily CLD04_10420 IPR003781 CoA-binding CLD04_10425 IPR006171 TOPRIM domain CLD04_10425 IPR018522 DNA topoisomerase, type IIA, conserved site CLD04_10425 IPR013506 DNA topoisomerase, type IIA, subunit B, domain 2 CLD04_10425 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_10425 IPR013760 DNA topoisomerase, type IIA-like domain superfamily CLD04_10425 IPR001241 DNA topoisomerase, type IIA CLD04_10425 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLD04_10425 IPR020568 Ribosomal protein S5 domain 2-type fold CLD04_10425 IPR005740 DNA topoisomerase 4 subunit B, Firmicutes/Mollicutes CLD04_10425 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_10425 IPR002288 DNA gyrase B subunit, C-terminal CLD04_10425 IPR013759 DNA topoisomerase, type IIA, subunit B, C-terminal CLD04_10430 IPR013758 DNA topoisomerase, type IIA, subunit A/ C-terminal, alpha-beta CLD04_10430 IPR002205 DNA topoisomerase, type IIA, subunit A/C-terminal CLD04_10430 IPR006691 DNA gyrase/topoisomerase IV, subunit A, C-terminal repeat CLD04_10430 IPR013757 Type IIA DNA topoisomerase subunit A, alpha-helical domain superfamily CLD04_10430 IPR005741 DNA topoisomerase IV subunit A, Gram-positive CLD04_10430 IPR013760 DNA topoisomerase, type IIA-like domain superfamily CLD04_10430 IPR035516 DNA gyrase/topoisomerase IV, subunit A, C-terminal CLD04_10440 IPR001463 Sodium:alanine symporter CLD04_10445 IPR001956 Carbohydrate-binding module 3 CLD04_10445 IPR018087 Glycoside hydrolase, family 5, conserved site CLD04_10445 IPR017853 Glycoside hydrolase superfamily CLD04_10445 IPR001547 Glycoside hydrolase, family 5 CLD04_10445 IPR008965 CBM2/CBM3, carbohydrate-binding domain superfamily CLD04_10445 IPR036966 Carbohydrate-binding module 3 superfamily CLD04_10450 IPR020302 Uncharacterized YnfE-like CLD04_10460 IPR006584 Cellulose binding, type IV CLD04_10460 IPR005084 Carbohydrate binding module family 6 CLD04_10460 IPR008979 Galactose-binding-like domain superfamily CLD04_10460 IPR006710 Glycoside hydrolase, family 43 CLD04_10460 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily CLD04_10465 IPR007267 GtrA-like protein CLD04_10470 IPR029044 Nucleotide-diphospho-sugar transferases CLD04_10470 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type CLD04_10470 IPR005835 Nucleotidyl transferase domain CLD04_10475 IPR032816 SNARE associated Golgi protein CLD04_10480 IPR038763 DHH phosphoesterase superfamily CLD04_10485 IPR034733 Acetyl-CoA carboxylase CLD04_10485 IPR029045 ClpP/crotonase-like domain superfamily CLD04_10485 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal CLD04_10485 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal CLD04_10490 IPR014748 Enoyl-CoA hydratase, C-terminal CLD04_10490 IPR001753 Enoyl-CoA hydratase/isomerase CLD04_10490 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site CLD04_10490 IPR029045 ClpP/crotonase-like domain superfamily CLD04_10495 IPR000891 Pyruvate carboxyltransferase CLD04_10495 IPR013785 Aldolase-type TIM barrel CLD04_10500 IPR000089 Biotin/lipoyl attachment CLD04_10500 IPR011053 Single hybrid motif CLD04_10505 IPR013815 ATP-grasp fold, subdomain 1 CLD04_10505 IPR005481 Biotin carboxylase-like, N-terminal domain CLD04_10505 IPR011764 Biotin carboxylation domain CLD04_10505 IPR005482 Biotin carboxylase, C-terminal CLD04_10505 IPR011761 ATP-grasp fold CLD04_10505 IPR016185 Pre-ATP-grasp domain superfamily CLD04_10505 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain CLD04_10505 IPR011054 Rudiment single hybrid motif CLD04_10510 IPR025110 AMP-binding enzyme, C-terminal domain CLD04_10510 IPR020845 AMP-binding, conserved site CLD04_10510 IPR000873 AMP-dependent synthetase/ligase CLD04_10515 IPR006089 Acyl-CoA dehydrogenase, conserved site CLD04_10515 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain CLD04_10515 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal CLD04_10515 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal CLD04_10515 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal CLD04_10515 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily CLD04_10515 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily CLD04_10525 IPR013783 Immunoglobulin-like fold CLD04_10525 IPR017853 Glycoside hydrolase superfamily CLD04_10525 IPR003790 Glycosyl hydrolase-like 10 CLD04_10525 IPR013785 Aldolase-type TIM barrel CLD04_10530 IPR010773 Mycobacterium phage PG1, Gp7 CLD04_10535 IPR029058 Alpha/Beta hydrolase fold CLD04_10535 IPR036736 ACP-like superfamily CLD04_10535 IPR010071 Amino acid adenylation domain CLD04_10535 IPR025110 AMP-binding enzyme, C-terminal domain CLD04_10535 IPR006162 Phosphopantetheine attachment site CLD04_10535 IPR009081 Phosphopantetheine binding ACP domain CLD04_10535 IPR020802 Polyketide synthase, thioesterase domain CLD04_10535 IPR020806 Polyketide synthase, phosphopantetheine-binding domain CLD04_10535 IPR020459 AMP-binding CLD04_10535 IPR001242 Condensation domain CLD04_10535 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CLD04_10535 IPR042099 AMP-dependent synthetase-like superfamily CLD04_10535 IPR000873 AMP-dependent synthetase/ligase CLD04_10535 IPR020845 AMP-binding, conserved site CLD04_10535 IPR001031 Thioesterase CLD04_10545 IPR012338 Beta-lactamase/transpeptidase-like CLD04_10545 IPR000667 Peptidase S13, D-Ala-D-Ala carboxypeptidase C CLD04_10550 IPR008183 Aldose 1-/Glucose-6-phosphate 1-epimerase CLD04_10550 IPR014718 Glycoside hydrolase-type carbohydrate-binding CLD04_10550 IPR011013 Galactose mutarotase-like domain superfamily CLD04_10555 IPR002528 Multi antimicrobial extrusion protein CLD04_10560 IPR031841 DL-endopeptidase inhibitor IseA CLD04_10570 IPR011010 DNA breaking-rejoining enzyme, catalytic core CLD04_10570 IPR013762 Integrase-like, catalytic domain superfamily CLD04_10570 IPR002104 Integrase, catalytic domain CLD04_10575 IPR010093 SinI-like, DNA-binding domain CLD04_10575 IPR041657 Helix-turn-helix domain, group 17 CLD04_10580 IPR029055 Nucleophile aminohydrolases, N-terminal CLD04_10580 IPR000101 Gamma-glutamyltranspeptidase CLD04_10590 IPR036188 FAD/NAD(P)-binding domain superfamily CLD04_10590 IPR028261 Dihydroprymidine dehydrogenase domain II CLD04_10590 IPR009051 Alpha-helical ferredoxin CLD04_10590 IPR023753 FAD/NAD(P)-binding domain CLD04_10590 IPR006005 Glutamate synthase, NADH/NADPH, small subunit 1 CLD04_10595 IPR002932 Glutamate synthase domain CLD04_10595 IPR006982 Glutamate synthase, central-N CLD04_10595 IPR029055 Nucleophile aminohydrolases, N-terminal CLD04_10595 IPR013785 Aldolase-type TIM barrel CLD04_10595 IPR017932 Glutamine amidotransferase type 2 domain CLD04_10595 IPR002489 Glutamate synthase, alpha subunit, C-terminal CLD04_10595 IPR036485 Glutamate synthase, alpha subunit, C-terminal domain superfamily CLD04_10600 IPR005119 LysR, substrate-binding CLD04_10600 IPR000847 Transcription regulator HTH, LysR CLD04_10600 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_10600 IPR036390 Winged helix DNA-binding domain superfamily CLD04_10605 IPR036974 PUA domain superfamily CLD04_10605 IPR015947 PUA-like superfamily CLD04_10605 IPR002478 PUA domain CLD04_10605 IPR019797 Glutamate 5-kinase, conserved site CLD04_10605 IPR011529 Glutamate 5-kinase CLD04_10605 IPR005715 Glutamate 5-kinase/delta-1-pyrroline-5-carboxylate synthase CLD04_10605 IPR001057 Glutamate/acetylglutamate kinase CLD04_10605 IPR041739 Glutamate-5-kinase domain CLD04_10605 IPR036393 Acetylglutamate kinase-like superfamily CLD04_10605 IPR001048 Aspartate/glutamate/uridylate kinase CLD04_10610 IPR036291 NAD(P)-binding domain superfamily CLD04_10610 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain CLD04_10610 IPR000304 Pyrroline-5-carboxylate reductase CLD04_10610 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CLD04_10610 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal CLD04_10615 IPR036390 Winged helix DNA-binding domain superfamily CLD04_10615 IPR003432 Replication terminator protein CLD04_10615 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_10620 IPR002347 Short-chain dehydrogenase/reductase SDR CLD04_10620 IPR020904 Short-chain dehydrogenase/reductase, conserved site CLD04_10620 IPR036291 NAD(P)-binding domain superfamily CLD04_10625 IPR009293 Uncharacterised protein family UPF0478 CLD04_10635 IPR000182 GNAT domain CLD04_10635 IPR016181 Acyl-CoA N-acyltransferase CLD04_10640 IPR036259 MFS transporter superfamily CLD04_10640 IPR004748 Polyol permease CLD04_10640 IPR020846 Major facilitator superfamily domain CLD04_10640 IPR011701 Major facilitator superfamily CLD04_10645 IPR000577 Carbohydrate kinase, FGGY CLD04_10645 IPR018485 Carbohydrate kinase, FGGY, C-terminal CLD04_10645 IPR018484 Carbohydrate kinase, FGGY, N-terminal CLD04_10650 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain CLD04_10650 IPR036291 NAD(P)-binding domain superfamily CLD04_10650 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CLD04_10650 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLD04_10655 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain CLD04_10655 IPR037920 Probable oxidoreductase YoaE, C-terminal CLD04_10655 IPR006656 Molybdopterin oxidoreductase CLD04_10655 IPR006657 Molybdopterin dinucleotide-binding domain CLD04_10655 IPR009010 Aspartate decarboxylase-like domain superfamily CLD04_10655 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site CLD04_10665 IPR036259 MFS transporter superfamily CLD04_10665 IPR020846 Major facilitator superfamily domain CLD04_10665 IPR005828 Major facilitator, sugar transporter-like CLD04_10665 IPR005829 Sugar transporter, conserved site CLD04_10665 IPR003663 Sugar/inositol transporter CLD04_10670 IPR000683 Oxidoreductase, N-terminal CLD04_10670 IPR036291 NAD(P)-binding domain superfamily CLD04_10670 IPR004104 Oxidoreductase, C-terminal CLD04_10675 IPR036237 Xylose isomerase-like superfamily CLD04_10675 IPR013022 Xylose isomerase-like, TIM barrel domain CLD04_10675 IPR023952 Inosose dehydratase CLD04_10675 IPR030823 IolE/MocC family CLD04_10680 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLD04_10680 IPR028082 Periplasmic binding protein-like I CLD04_10680 IPR000843 LacI-type HTH domain CLD04_10695 IPR025100 Protein of unknown function DUF4025 CLD04_10700 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLD04_10700 IPR003660 HAMP domain CLD04_10700 IPR004090 Chemotaxis methyl-accepting receptor CLD04_10700 IPR007891 CHASE3 CLD04_10705 IPR012687 4-HPA 3-monooxygenase large component, Deinococcus-type CLD04_10705 IPR004925 HpaB/PvcC/4-BUDH CLD04_10705 IPR024719 HpaB/PvcC/4-BUDH C-terminal CLD04_10705 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily CLD04_10705 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal CLD04_10705 IPR024674 HpaB/PvcC/4-BUDH N-terminal CLD04_10710 IPR036908 RlpA-like domain superfamily CLD04_10710 IPR009009 RlpA-like protein, double-psi beta-barrel domain CLD04_10710 IPR036749 Expansin, cellulose-binding-like domain superfamily CLD04_10715 IPR010699 Protein of unknown function DUF1275 CLD04_10720 IPR011050 Pectin lyase fold/virulence factor CLD04_10720 IPR002022 Pectate lyase CLD04_10720 IPR012334 Pectin lyase fold CLD04_10725 IPR003738 SOS response associated peptidase (SRAP) CLD04_10725 IPR036590 SOS response associated peptidase-like CLD04_10740 IPR032545 Protein of unknown function DUF4944 CLD04_10755 IPR007391 Vancomycin resistance VanW CLD04_10765 IPR001387 Cro/C1-type helix-turn-helix domain CLD04_10765 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLD04_10775 IPR036390 Winged helix DNA-binding domain superfamily CLD04_10775 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_10775 IPR000847 Transcription regulator HTH, LysR CLD04_10775 IPR005119 LysR, substrate-binding CLD04_10780 IPR000620 EamA domain CLD04_10795 IPR029062 Class I glutamine amidotransferase-like CLD04_10795 IPR002818 DJ-1/PfpI CLD04_10800 IPR012338 Beta-lactamase/transpeptidase-like CLD04_10800 IPR000871 Beta-lactamase, class-A CLD04_10800 IPR023650 Beta-lactamase, class-A active site CLD04_10805 IPR021598 Protein of unknown function DUF3221 CLD04_10825 IPR013815 ATP-grasp fold, subdomain 1 CLD04_10825 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding CLD04_10825 IPR008279 PEP-utilising enzyme, mobile domain CLD04_10825 IPR036637 Phosphohistidine domain superfamily CLD04_10830 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily CLD04_10830 IPR013319 Glycoside hydrolase family 11/12 CLD04_10830 IPR018208 Glycoside hydrolase family 11, active site 1 CLD04_10830 IPR033119 Glycoside hydrolase family 11, active site 2 CLD04_10830 IPR033123 Glycosyl hydrolases family 11 (GH11) domain CLD04_10830 IPR001137 Glycoside hydrolase family 11 CLD04_10840 IPR007829 TM2 domain CLD04_10925 IPR040702 Response regulator aspartate phosphatase, N-terminal CLD04_10925 IPR013026 Tetratricopeptide repeat-containing domain CLD04_10925 IPR011990 Tetratricopeptide-like helical domain superfamily CLD04_10925 IPR019734 Tetratricopeptide repeat CLD04_10965 IPR016181 Acyl-CoA N-acyltransferase CLD04_10965 IPR000182 GNAT domain CLD04_10970 IPR018958 Knr4/Smi1-like domain CLD04_10980 IPR028900 Tox-SHH domain CLD04_10980 IPR006829 LXG domain CLD04_10985 IPR037883 Knr4/Smi1-like domain superfamily CLD04_10985 IPR018958 Knr4/Smi1-like domain CLD04_10990 IPR002937 Amine oxidase CLD04_10990 IPR001613 Flavin amine oxidase CLD04_10990 IPR036188 FAD/NAD(P)-binding domain superfamily CLD04_10995 IPR008231 Probable chaperone CsaA CLD04_10995 IPR002547 tRNA-binding domain CLD04_10995 IPR012340 Nucleic acid-binding, OB-fold CLD04_11000 IPR018062 HTH domain AraC-type, conserved site CLD04_11000 IPR011051 RmlC-like cupin domain superfamily CLD04_11000 IPR013096 Cupin 2, conserved barrel CLD04_11000 IPR009057 Homeobox-like domain superfamily CLD04_11000 IPR018060 DNA binding HTH domain, AraC-type CLD04_11000 IPR014710 RmlC-like jelly roll fold CLD04_11005 IPR016181 Acyl-CoA N-acyltransferase CLD04_11005 IPR000182 GNAT domain CLD04_11010 IPR025996 Tetracyclin repressor-like, C-terminal domain (WHG) CLD04_11010 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CLD04_11010 IPR001647 DNA-binding HTH domain, TetR-type CLD04_11010 IPR009057 Homeobox-like domain superfamily CLD04_11015 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLD04_11015 IPR001279 Metallo-beta-lactamase CLD04_11020 IPR011256 Regulatory factor, effector binding domain superfamily CLD04_11020 IPR010499 Bacterial transcription activator, effector binding CLD04_11020 IPR029442 GyrI-like small molecule binding domain CLD04_11025 IPR013196 Helix-turn-helix, type 11 CLD04_11025 IPR001034 DeoR-type HTH domain CLD04_11025 IPR028349 Protein PafC CLD04_11025 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_11025 IPR036390 Winged helix DNA-binding domain superfamily CLD04_11025 IPR026881 WYL domain CLD04_11035 IPR011991 ArsR-like helix-turn-helix domain CLD04_11035 IPR036390 Winged helix DNA-binding domain superfamily CLD04_11035 IPR001845 HTH ArsR-type DNA-binding domain CLD04_11035 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_11040 IPR023346 Lysozyme-like domain superfamily CLD04_11045 IPR007352 Protein of unknown function DUF420 CLD04_11050 IPR040983 Bacterial archaeo-eukaryotic release factor family 5 CLD04_11055 IPR016181 Acyl-CoA N-acyltransferase CLD04_11060 IPR029062 Class I glutamine amidotransferase-like CLD04_11060 IPR003507 Peptidase family S66 CLD04_11060 IPR040921 LD-carboxypeptidase, C-terminal CLD04_11060 IPR040449 LD-carboxypeptidase, N-terminal CLD04_11060 IPR027461 LD-carboxypeptidase A, C-terminal domain superfamily CLD04_11060 IPR027478 Murein tetrapeptide carboxypeptidase, N-terminal CLD04_11065 IPR005804 Fatty acid desaturase domain CLD04_11070 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_11070 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain CLD04_11075 IPR011006 CheY-like superfamily CLD04_11075 IPR016032 Signal transduction response regulator, C-terminal effector CLD04_11075 IPR001789 Signal transduction response regulator, receiver domain CLD04_11075 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_11075 IPR000792 Transcription regulator LuxR, C-terminal CLD04_11080 IPR036908 RlpA-like domain superfamily CLD04_11080 IPR010611 3D domain CLD04_11080 IPR018392 LysM domain CLD04_11080 IPR036779 LysM domain superfamily CLD04_11085 IPR004589 DNA helicase, ATP-dependent, RecQ type CLD04_11085 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_11085 IPR006293 DNA helicase, ATP-dependent, RecQ type, bacterial CLD04_11085 IPR032284 ATP-dependent DNA helicase RecQ, zinc-binding domain CLD04_11085 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_11085 IPR002121 HRDC domain CLD04_11085 IPR018982 RQC domain CLD04_11085 IPR036390 Winged helix DNA-binding domain superfamily CLD04_11085 IPR010997 HRDC-like superfamily CLD04_11085 IPR001650 Helicase, C-terminal CLD04_11085 IPR011545 DEAD/DEAH box helicase domain CLD04_11085 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLD04_11100 IPR029039 Flavoprotein-like superfamily CLD04_11100 IPR003680 Flavodoxin-like fold CLD04_11100 IPR023048 NADH-azoreductase, FMN-dependent CLD04_11105 IPR020458 Zinc finger, DksA/TraR C4-type conserved site CLD04_11105 IPR000962 Zinc finger, DksA/TraR C4-type CLD04_11105 IPR037187 DksA, N-terminal domain superfamily CLD04_11120 IPR002068 Alpha crystallin/Hsp20 domain CLD04_11120 IPR008978 HSP20-like chaperone CLD04_11120 IPR031107 Small heat shock protein HSP20 CLD04_11135 IPR037063 Bacterial Pleckstrin homology domain superfamily CLD04_11135 IPR012544 Bacterial Pleckstrin homology domain CLD04_11145 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent CLD04_11145 IPR016163 Aldehyde dehydrogenase, C-terminal CLD04_11145 IPR029510 Aldehyde dehydrogenase, glutamic acid active site CLD04_11145 IPR016162 Aldehyde dehydrogenase, N-terminal CLD04_11145 IPR015590 Aldehyde dehydrogenase domain CLD04_11145 IPR016161 Aldehyde/histidinol dehydrogenase CLD04_11150 IPR008930 Terpenoid cyclases/protein prenyltransferase alpha-alpha toroid CLD04_11150 IPR018333 Squalene cyclase CLD04_11150 IPR032696 Squalene cyclase, C-terminal CLD04_11150 IPR032697 Squalene cyclase, N-terminal CLD04_11155 IPR001189 Manganese/iron superoxide dismutase CLD04_11155 IPR019832 Manganese/iron superoxide dismutase, C-terminal CLD04_11155 IPR019833 Manganese/iron superoxide dismutase, binding site CLD04_11155 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily CLD04_11155 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily CLD04_11155 IPR019831 Manganese/iron superoxide dismutase, N-terminal CLD04_11160 IPR037272 Sodium:neurotransmitter symporter superfamily CLD04_11160 IPR000175 Sodium:neurotransmitter symporter CLD04_11165 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 CLD04_11165 IPR004710 Bile acid:sodium symporter CLD04_11165 IPR038770 Sodium/solute symporter superfamily CLD04_11170 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain CLD04_11170 IPR036625 E3-binding domain superfamily CLD04_11170 IPR004167 Peripheral subunit-binding domain CLD04_11170 IPR011053 Single hybrid motif CLD04_11170 IPR006255 Dihydrolipoamide succinyltransferase CLD04_11170 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site CLD04_11170 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CLD04_11170 IPR000089 Biotin/lipoyl attachment CLD04_11175 IPR011603 2-oxoglutarate dehydrogenase E1 component CLD04_11175 IPR023784 2-oxoglutarate dehydrogenase E1 component, bacterial CLD04_11175 IPR001017 Dehydrogenase, E1 component CLD04_11175 IPR031717 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal CLD04_11175 IPR042179 Multifunctional 2-oxoglutarate metabolism enzyme, C-terminal domain superfamily CLD04_11175 IPR029061 Thiamin diphosphate-binding fold CLD04_11175 IPR005475 Transketolase-like, pyrimidine-binding domain CLD04_11180 IPR002035 von Willebrand factor, type A CLD04_11180 IPR036465 von Willebrand factor A-like domain superfamily CLD04_11185 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_11185 IPR001270 ClpA/B family CLD04_11185 IPR003593 AAA+ ATPase domain CLD04_11185 IPR011704 ATPase, dynein-related, AAA domain CLD04_11190 IPR024134 Superoxide dismutase (Cu/Zn) / superoxide dismutase copper chaperone CLD04_11190 IPR036423 Superoxide dismutase-like, copper/zinc binding domain superfamily CLD04_11190 IPR032831 Prokaryotic lipoprotein-attachment site CLD04_11190 IPR001424 Superoxide dismutase, copper/zinc binding domain CLD04_11195 IPR038765 Papain-like cysteine peptidase superfamily CLD04_11195 IPR018392 LysM domain CLD04_11195 IPR036779 LysM domain superfamily CLD04_11195 IPR000064 Endopeptidase, NLPC/P60 domain CLD04_11200 IPR006326 UDP-glycosyltransferase, MGT CLD04_11200 IPR002213 UDP-glucuronosyl/UDP-glucosyltransferase CLD04_11205 IPR014046 Diadenylate cyclase CLD04_11205 IPR034693 Diadenylate cyclase CdaS CLD04_11205 IPR036888 DNA integrity scanning protein, DisA, N-terminal domain superfamily CLD04_11205 IPR003390 DNA integrity scanning protein, DisA, N-terminal CLD04_11205 IPR019457 Uncharacterised domain YojJ, N-terminal CLD04_11210 IPR002528 Multi antimicrobial extrusion protein CLD04_11215 IPR002645 STAS domain CLD04_11215 IPR036513 STAS domain superfamily CLD04_11220 IPR024078 Putative deacetylase LmbE-like domain superfamily CLD04_11220 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related CLD04_11220 IPR023841 Bacillithiol biosynthesis deacetylase BshB2 CLD04_11225 IPR014934 Protein of unknown function DUF1806 CLD04_11225 IPR036492 Hypothetical protein YojF superfamily CLD04_11235 IPR004626 RarD protein CLD04_11235 IPR000620 EamA domain CLD04_11240 IPR008978 HSP20-like chaperone CLD04_11255 IPR037479 Tautomerase, MSAD family CLD04_11255 IPR014347 Tautomerase/MIF superfamily CLD04_11260 IPR002577 Helix-turn-helix, HxlR type CLD04_11260 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_11260 IPR036390 Winged helix DNA-binding domain superfamily CLD04_11260 IPR011991 ArsR-like helix-turn-helix domain CLD04_11265 IPR029479 Nitroreductase CLD04_11265 IPR000415 Nitroreductase-like CLD04_11270 IPR002925 Dienelactone hydrolase CLD04_11270 IPR029058 Alpha/Beta hydrolase fold CLD04_11275 IPR037523 Vicinal oxygen chelate (VOC) domain CLD04_11275 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CLD04_11275 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CLD04_11275 IPR000595 Cyclic nucleotide-binding domain CLD04_11280 IPR021741 Protein of unknown function DUF3311 CLD04_11285 IPR001734 Sodium/solute symporter CLD04_11285 IPR038377 Sodium/glucose symporter superfamily CLD04_11295 IPR029045 ClpP/crotonase-like domain superfamily CLD04_11295 IPR001478 PDZ domain CLD04_11295 IPR036034 PDZ superfamily CLD04_11295 IPR004447 C-terminal-processing peptidase S41A CLD04_11295 IPR002477 Peptidoglycan binding-like CLD04_11295 IPR041489 PDZ domain 6 CLD04_11295 IPR036366 PGBD superfamily CLD04_11295 IPR036365 PGBD-like superfamily CLD04_11295 IPR005151 Tail specific protease CLD04_11300 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_11300 IPR013216 Methyltransferase type 11 CLD04_11310 IPR003709 Peptidase M15B CLD04_11310 IPR009045 Hedgehog signalling/DD-peptidase zinc-binding domain superfamily CLD04_11315 IPR000845 Nucleoside phosphorylase domain CLD04_11315 IPR035994 Nucleoside phosphorylase superfamily CLD04_11315 IPR018016 Nucleoside phosphorylase, conserved site CLD04_11315 IPR004402 Purine nucleoside phosphorylase DeoD-type CLD04_11325 IPR025923 YodL-like CLD04_11330 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily CLD04_11330 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CLD04_11335 IPR025545 YozD-like protein CLD04_11355 IPR036806 YozE SAM-like superfamily CLD04_11355 IPR010673 Protein of unknown function UPF0346 CLD04_11355 IPR023089 YozE SAM-like domain CLD04_11360 IPR022451 Conserved hypothetical protein CHP03829, YokU CLD04_11360 IPR022453 Zinc finger, MqsA-type CLD04_11370 IPR016181 Acyl-CoA N-acyltransferase CLD04_11370 IPR000182 GNAT domain CLD04_11370 IPR022525 Beta-lysine N-acetyltransferase CLD04_11375 IPR011650 Peptidase M20, dimerisation domain CLD04_11375 IPR010182 N-formyl-4-amino-5-aminomethyl-2-methylpyrimidine deformylase/Succinyl-diaminopimelate desuccinylase CLD04_11375 IPR036264 Bacterial exopeptidase dimerisation domain CLD04_11375 IPR002933 Peptidase M20 CLD04_11380 IPR037171 NagB/RpiA transferase-like CLD04_11380 IPR012791 3-oxoacid CoA-transferase, subunit B CLD04_11380 IPR004165 Coenzyme A transferase family I CLD04_11385 IPR012792 3-oxoacid CoA-transferase, subunit A CLD04_11385 IPR004165 Coenzyme A transferase family I CLD04_11385 IPR004163 Coenzyme A transferase binding site CLD04_11385 IPR037171 NagB/RpiA transferase-like CLD04_11390 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_11390 IPR005814 Aminotransferase class-III CLD04_11390 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_11390 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_11400 IPR000182 GNAT domain CLD04_11400 IPR016181 Acyl-CoA N-acyltransferase CLD04_11405 IPR029044 Nucleotide-diphospho-sugar transferases CLD04_11405 IPR001173 Glycosyltransferase 2-like CLD04_11420 IPR024542 Domain of unknown function DUF3880 CLD04_11425 IPR003431 Beta propeller phytase CLD04_11425 IPR011042 Six-bladed beta-propeller, TolB-like CLD04_11430 IPR020025 UDP-N-acetylglucosamine 4,6-dehydratase (inverting) CLD04_11430 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain CLD04_11430 IPR036291 NAD(P)-binding domain superfamily CLD04_11435 IPR011057 Mss4-like superfamily CLD04_11435 IPR002579 Peptide methionine sulphoxide reductase MrsB CLD04_11435 IPR028427 Peptide methionine sulfoxide reductase CLD04_11440 IPR002569 Peptide methionine sulphoxide reductase MsrA CLD04_11440 IPR036509 Peptide methionine sulphoxide reductase MsrA superfamily CLD04_11445 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_11445 IPR000835 MarR-type HTH domain CLD04_11445 IPR036390 Winged helix DNA-binding domain superfamily CLD04_11450 IPR002528 Multi antimicrobial extrusion protein CLD04_11455 IPR035403 Uncharacterized protein YmpT-like CLD04_11460 IPR018672 Protein of unknown function DUF2140 CLD04_11465 IPR036514 SGNH hydrolase superfamily CLD04_11465 IPR013830 SGNH hydrolase-type esterase domain CLD04_11470 IPR003782 Copper chaperone SCO1/SenC CLD04_11470 IPR013766 Thioredoxin domain CLD04_11470 IPR036249 Thioredoxin-like superfamily CLD04_11475 IPR019687 Protein of unknown function DUF2535 CLD04_11480 IPR001926 Pyridoxal-phosphate dependent enzyme CLD04_11480 IPR011820 L-threonine dehydratase biosynthetic IlvA CLD04_11480 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site CLD04_11480 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CLD04_11480 IPR001721 Threonine dehydratase, ACT-like domain CLD04_11485 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_11485 IPR003593 AAA+ ATPase domain CLD04_11485 IPR013668 Ribonuclease R winged-helix domain CLD04_11485 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_11485 IPR002078 RNA polymerase sigma factor 54 interaction domain CLD04_11490 IPR004254 AdipoR/Haemolysin-III-related CLD04_11490 IPR005744 Hly-III CLD04_11500 IPR024072 Dihydrofolate reductase-like domain superfamily CLD04_11500 IPR001796 Dihydrofolate reductase domain CLD04_11500 IPR017925 Dihydrofolate reductase conserved site CLD04_11500 IPR012259 Dihydrofolate reductase CLD04_11505 IPR020940 Thymidylate synthase, active site CLD04_11505 IPR023451 Thymidylate synthase/dCMP hydroxymethylase domain CLD04_11505 IPR036926 Thymidylate synthase/dCMP hydroxymethylase superfamily CLD04_11505 IPR000398 Thymidylate synthase CLD04_11510 IPR036681 PgpA-like superfamily CLD04_11510 IPR026038 Putative phosphatidylglycerophosphatase CLD04_11510 IPR007686 YutG/PgpA domain CLD04_11515 IPR025616 YpjP-like protein CLD04_11520 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_11520 IPR007536 Ribosomal RNA small subunit methyltransferase J CLD04_11525 IPR009474 Putative bacilliredoxin, YphP/YqiW family CLD04_11525 IPR036249 Thioredoxin-like superfamily CLD04_11530 IPR004404 Dihydroxy-acid dehydratase CLD04_11530 IPR020558 Dihydroxy-acid/6-phosphogluconate dehydratase, conserved site CLD04_11530 IPR037237 IlvD/EDD, N-terminal domain CLD04_11530 IPR042096 Dihydroxy-acid dehydratase, C-terminal CLD04_11530 IPR000581 Dihydroxy-acid/6-phosphogluconate dehydratase CLD04_11535 IPR025989 Virulence factor domain CLD04_11535 IPR004155 PBS lyase HEAT-like repeat CLD04_11535 IPR011989 Armadillo-like helical CLD04_11535 IPR016024 Armadillo-type fold CLD04_11535 IPR014824 Scaffold protein Nfu/NifU, N-terminal CLD04_11535 IPR036498 Scaffold protein Nfu/NifU, N-terminal domain superfamily CLD04_11540 IPR006674 HD domain CLD04_11540 IPR003607 HD/PDEase domain CLD04_11545 IPR000889 Glutathione peroxidase CLD04_11545 IPR029759 Glutathione peroxidase active site CLD04_11545 IPR029760 Glutathione peroxidase conserved site CLD04_11545 IPR036249 Thioredoxin-like superfamily CLD04_11550 IPR033752 MetA family CLD04_11550 IPR029062 Class I glutamine amidotransferase-like CLD04_11550 IPR005697 Homoserine O-succinyltransferase MetA CLD04_11555 IPR009695 Diacylglycerol glucosyltransferase, N-terminal CLD04_11555 IPR001296 Glycosyl transferase, family 1 CLD04_11555 IPR023589 Processive diacylglycerol beta-glucosyltransferase CLD04_11560 IPR012156 Cold shock, CspA CLD04_11560 IPR011129 Cold shock domain CLD04_11560 IPR019844 Cold-shock (CSD) domain CLD04_11560 IPR012340 Nucleic acid-binding, OB-fold CLD04_11560 IPR002059 Cold-shock protein, DNA-binding CLD04_11570 IPR020314 Uncharacterised protein family YpzA CLD04_11575 IPR019718 Protein of unknown function DUF2602 CLD04_11580 IPR036397 Ribonuclease H superfamily CLD04_11580 IPR002156 Ribonuclease H domain CLD04_11580 IPR012337 Ribonuclease H-like superfamily CLD04_11585 IPR003744 Queuosine precursor transporter CLD04_11590 IPR036397 Ribonuclease H superfamily CLD04_11590 IPR012337 Ribonuclease H-like superfamily CLD04_11590 IPR002156 Ribonuclease H domain CLD04_11595 IPR017526 Small acid-soluble spore protein, SspL CLD04_11600 IPR020045 DNA polymerase I-like, H3TH domain CLD04_11600 IPR036279 5'-3' exonuclease, C-terminal domain superfamily CLD04_11600 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal CLD04_11600 IPR008918 Helix-hairpin-helix motif, class 2 CLD04_11600 IPR029060 PIN-like domain superfamily CLD04_11600 IPR038969 Flap endonuclease CLD04_11600 IPR002421 5'-3' exonuclease, N-terminal CLD04_11610 IPR019688 Protein of unknown function DUF2533 CLD04_11615 IPR027094 Mitofusin family CLD04_11615 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_11615 IPR022812 Dynamin superfamily CLD04_11625 IPR007269 Isoprenylcysteine carboxyl methyltransferase CLD04_11630 IPR018088 Chalcone/stilbene synthase, active site CLD04_11630 IPR012328 Chalcone/stilbene synthase, C-terminal CLD04_11630 IPR016039 Thiolase-like CLD04_11630 IPR011141 Polyketide synthase, type III CLD04_11630 IPR001099 Chalcone/stilbene synthase, N-terminal CLD04_11635 IPR006042 Xanthine/uracil permease CLD04_11635 IPR006043 Xanthine/uracil/vitamin C permease CLD04_11635 IPR017588 Uric acid permease UacT-like CLD04_11640 IPR029057 Phosphoribosyltransferase-like CLD04_11640 IPR000836 Phosphoribosyltransferase domain CLD04_11640 IPR010079 Xanthine phosphoribosyltransferase CLD04_11645 IPR001333 Peptidase M32, carboxypeptidase Taq CLD04_11650 IPR018395 2-keto-3-deoxygluconate permease, subgroup CLD04_11650 IPR004684 2-keto-3-deoxygluconate permease CLD04_11655 IPR000887 KDPG/KHG aldolase CLD04_11655 IPR013785 Aldolase-type TIM barrel CLD04_11655 IPR031338 KDPG/KHG aldolase, active site 2 CLD04_11660 IPR011611 Carbohydrate kinase PfkB CLD04_11660 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site CLD04_11660 IPR029056 Ribokinase-like CLD04_11665 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLD04_11665 IPR000843 LacI-type HTH domain CLD04_11665 IPR012310 DNA ligase, ATP-dependent, central CLD04_11665 IPR028082 Periplasmic binding protein-like I CLD04_11670 IPR021120 KduI/IolB isomerase CLD04_11670 IPR007045 5-keto 4-deoxyuronate isomerase CLD04_11670 IPR027449 5-keto-4-deoxyuronate isomerase, N-terminal CLD04_11670 IPR014710 RmlC-like jelly roll fold CLD04_11670 IPR011051 RmlC-like cupin domain superfamily CLD04_11675 IPR036291 NAD(P)-binding domain superfamily CLD04_11675 IPR002347 Short-chain dehydrogenase/reductase SDR CLD04_11675 IPR011286 2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase CLD04_11675 IPR020904 Short-chain dehydrogenase/reductase, conserved site CLD04_11680 IPR014013 Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type CLD04_11680 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_11680 IPR006555 ATP-dependent helicase, C-terminal CLD04_11690 IPR025413 YpzG-like protein CLD04_11695 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_11695 IPR000241 Putative RNA methylase domain CLD04_11695 IPR002052 DNA methylase, N-6 adenine-specific, conserved site CLD04_11695 IPR004114 THUMP domain CLD04_11705 IPR019933 DivIVA domain CLD04_11705 IPR011229 Cell cycle protein GpsB CLD04_11705 IPR007793 DivIVA family CLD04_11710 IPR010697 YspA SLOG family CLD04_11715 IPR020108 Spore coat protein CotD CLD04_11720 IPR038720 YprB, ribonuclease H-like domain CLD04_11720 IPR012337 Ribonuclease H-like superfamily CLD04_11720 IPR011990 Tetratricopeptide-like helical domain superfamily CLD04_11725 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLD04_11725 IPR011545 DEAD/DEAH box helicase domain CLD04_11725 IPR018973 DEAD/DEAH-box helicase, putative CLD04_11725 IPR001650 Helicase, C-terminal CLD04_11725 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_11730 IPR011055 Duplicated hybrid motif CLD04_11730 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 CLD04_11735 IPR002068 Alpha crystallin/Hsp20 domain CLD04_11735 IPR008978 HSP20-like chaperone CLD04_11740 IPR025555 YppG-like protein CLD04_11745 IPR025553 YppF-like protein CLD04_11750 IPR014913 Protein of unknown function DUF1798 CLD04_11750 IPR023351 YppE-like superfamily CLD04_11755 IPR020252 Protein of unknown function DUF5446 CLD04_11765 IPR019658 Protein of unknown function DUF2515 CLD04_11770 IPR011856 tRNA endonuclease-like domain superfamily CLD04_11770 IPR004612 Holliday junction resolvase RecU CLD04_11770 IPR011335 Restriction endonuclease type II-like CLD04_11775 IPR001460 Penicillin-binding protein, transpeptidase CLD04_11775 IPR012338 Beta-lactamase/transpeptidase-like CLD04_11775 IPR003961 Fibronectin type III CLD04_11775 IPR036950 Penicillin binding protein transglycosylase domain CLD04_11775 IPR023346 Lysozyme-like domain superfamily CLD04_11775 IPR013783 Immunoglobulin-like fold CLD04_11775 IPR001264 Glycosyl transferase, family 51 CLD04_11775 IPR036116 Fibronectin type III superfamily CLD04_11785 IPR023170 Helix-turn-helix, base-excision DNA repair, C-terminal CLD04_11785 IPR005759 Endonuclease III CLD04_11785 IPR004035 Endonuclease III, iron-sulphur binding site CLD04_11785 IPR003265 HhH-GPD domain CLD04_11785 IPR003651 Endonuclease III-like, iron-sulphur cluster loop motif CLD04_11785 IPR004036 Endonuclease III-like, conserved site-2 CLD04_11785 IPR000445 Helix-hairpin-helix motif CLD04_11785 IPR011257 DNA glycosylase CLD04_11790 IPR034829 DnaD-like domain superfamily CLD04_11790 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_11790 IPR006343 DnaD domain CLD04_11795 IPR012340 Nucleic acid-binding, OB-fold CLD04_11795 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) CLD04_11795 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb CLD04_11795 IPR004522 Asparagine-tRNA ligase CLD04_11795 IPR006195 Aminoacyl-tRNA synthetase, class II CLD04_11795 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type CLD04_11800 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_11800 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_11800 IPR004839 Aminotransferase, class I/classII CLD04_11800 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_11800 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site CLD04_11805 IPR025711 PepSY domain CLD04_11805 IPR041401 Domain of unknown function DUF5590 CLD04_11810 IPR012190 Uncharacterised conserved protein UCP036698, YpmA CLD04_11815 IPR006935 Helicase/UvrB, N-terminal CLD04_11815 IPR001650 Helicase, C-terminal CLD04_11815 IPR036397 Ribonuclease H superfamily CLD04_11815 IPR014013 Helicase superfamily 1/2, ATP-binding domain, DinG/Rad3-type CLD04_11815 IPR012337 Ribonuclease H-like superfamily CLD04_11815 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_11815 IPR013520 Exonuclease, RNase T/DNA polymerase III CLD04_11815 IPR006054 DNA polymerase III epsilon subunit, exonuclease domain CLD04_11815 IPR006310 3'-5' exonuclease DinG CLD04_11815 IPR006555 ATP-dependent helicase, C-terminal CLD04_11815 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLD04_11820 IPR009010 Aspartate decarboxylase-like domain superfamily CLD04_11820 IPR003190 Aspartate decarboxylase CLD04_11825 IPR004821 Cytidyltransferase-like domain CLD04_11825 IPR003721 Pantoate-beta-alanine ligase CLD04_11825 IPR042176 Pantoate-beta-alanine ligase, C-terminal domain CLD04_11825 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLD04_11830 IPR040442 Pyruvate kinase-like domain superfamily CLD04_11830 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily CLD04_11830 IPR003700 Ketopantoate hydroxymethyltransferase CLD04_11835 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_11835 IPR003142 Biotin protein ligase, C-terminal CLD04_11835 IPR008988 Transcriptional repressor, C-terminal CLD04_11835 IPR013196 Helix-turn-helix, type 11 CLD04_11835 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain CLD04_11835 IPR004409 Biotin operon repressor, helix-turn-helix domain CLD04_11835 IPR004408 Biotin--acetyl-CoA-carboxylase ligase CLD04_11835 IPR036390 Winged helix DNA-binding domain superfamily CLD04_11835 IPR030855 Bifunctional ligase/repressor BirA CLD04_11840 IPR023068 CCA-adding enzyme, firmicutes CLD04_11840 IPR002646 Poly A polymerase, head domain CLD04_11840 IPR032828 tRNA nucleotidyltransferase/poly(A) polymerase, RNA and SrmB- binding domain CLD04_11840 IPR032810 CCA-adding enzyme, C-terminal CLD04_11845 IPR001296 Glycosyl transferase, family 1 CLD04_11845 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain CLD04_11845 IPR023881 N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA CLD04_11850 IPR024078 Putative deacetylase LmbE-like domain superfamily CLD04_11850 IPR003737 N-acetylglucosaminyl phosphatidylinositol deacetylase-related CLD04_11850 IPR023842 Bacillithiol biosynthesis deacetylase, BshB1 CLD04_11855 IPR004363 Methylglyoxal synthase CLD04_11855 IPR018148 Methylglyoxal synthase, active site CLD04_11855 IPR011607 Methylglyoxal synthase-like domain CLD04_11855 IPR036914 Methylglyoxal synthase-like domain superfamily CLD04_11860 IPR023940 Dihydrodipicolinate reductase CLD04_11860 IPR000846 Dihydrodipicolinate reductase, N-terminal CLD04_11860 IPR022663 Dihydrodipicolinate reductase, C-terminal CLD04_11860 IPR036291 NAD(P)-binding domain superfamily CLD04_11860 IPR022664 Dihydrodipicolinate reductase, conserved site CLD04_11865 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core CLD04_11865 IPR012359 NTP pyrophosphohydrolase MazG-related, YpjD CLD04_11870 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CLD04_11870 IPR019264 Domain of unknown function DUF2179 CLD04_11870 IPR003740 Uncharacterised membrane protein YitT CLD04_11875 IPR014231 Sporulation protein YpjB CLD04_11880 IPR009845 Protein of unknown function DUF1405 CLD04_11885 IPR009056 Cytochrome c-like domain CLD04_11885 IPR027387 Cytochrome b/b6-like domain superfamily CLD04_11885 IPR036150 Cytochrome b/b6, C-terminal domain superfamily CLD04_11885 IPR036909 Cytochrome c-like domain superfamily CLD04_11885 IPR005798 Cytochrome b/b6, C-terminal CLD04_11885 IPR012049 Menaquinone:cytochrome c reductase, cytochrome b/c subunit CLD04_11890 IPR027387 Cytochrome b/b6-like domain superfamily CLD04_11890 IPR016174 Di-haem cytochrome, transmembrane CLD04_11890 IPR005797 Cytochrome b/b6, N-terminal CLD04_11895 IPR017941 Rieske [2Fe-2S] iron-sulphur domain CLD04_11895 IPR014349 Rieske iron-sulphur protein CLD04_11895 IPR036922 Rieske [2Fe-2S] iron-sulphur domain superfamily CLD04_11895 IPR006311 Twin-arginine translocation pathway, signal sequence CLD04_11900 IPR019615 Protein of unknown function DUF2487 CLD04_11905 IPR014957 IDEAL domain CLD04_11905 IPR011188 Uncharacterised protein family UPF0302 CLD04_11905 IPR014963 Uncharacterised domain UPF0302, N-terminal CLD04_11905 IPR038091 UPF0302, N-terminal domain superfamily CLD04_11905 IPR027393 Virus scaffolding protein, C-terminal CLD04_11910 IPR019734 Tetratricopeptide repeat CLD04_11910 IPR011990 Tetratricopeptide-like helical domain superfamily CLD04_11910 IPR013026 Tetratricopeptide repeat-containing domain CLD04_11915 IPR006264 3-phosphoshikimate 1-carboxyvinyltransferase CLD04_11915 IPR036968 Enolpyruvate transferase domain superfamily CLD04_11915 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta CLD04_11915 IPR001986 Enolpyruvate transferase domain CLD04_11915 IPR023193 3-phosphoshikimate 1-carboxyvinyltransferase, conserved site CLD04_11920 IPR003099 Prephenate dehydrogenase CLD04_11920 IPR036291 NAD(P)-binding domain superfamily CLD04_11920 IPR002912 ACT domain CLD04_11920 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CLD04_11925 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site CLD04_11925 IPR004839 Aminotransferase, class I/classII CLD04_11925 IPR005861 Histidinol-phosphate aminotransferase family CLD04_11925 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_11925 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_11925 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_11930 IPR018204 Tryptophan synthase, alpha chain, active site CLD04_11930 IPR013785 Aldolase-type TIM barrel CLD04_11930 IPR011060 Ribulose-phosphate binding barrel CLD04_11930 IPR002028 Tryptophan synthase, alpha chain CLD04_11935 IPR001926 Pyridoxal-phosphate dependent enzyme CLD04_11935 IPR006654 Tryptophan synthase, beta chain CLD04_11935 IPR006653 Tryptophan synthase, beta chain, conserved site CLD04_11935 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CLD04_11935 IPR023026 Tryptophan synthase beta chain/beta chain-like CLD04_11940 IPR011060 Ribulose-phosphate binding barrel CLD04_11940 IPR001240 N-(5'phosphoribosyl) anthranilate isomerase (PRAI) CLD04_11940 IPR013785 Aldolase-type TIM barrel CLD04_11945 IPR011060 Ribulose-phosphate binding barrel CLD04_11945 IPR013798 Indole-3-glycerol phosphate synthase CLD04_11945 IPR013785 Aldolase-type TIM barrel CLD04_11945 IPR001468 Indole-3-glycerol phosphate synthase, conserved site CLD04_11950 IPR017459 Glycosyl transferase family 3, N-terminal domain CLD04_11950 IPR000312 Glycosyl transferase, family 3 CLD04_11950 IPR005940 Anthranilate phosphoribosyl transferase CLD04_11950 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily CLD04_11950 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily CLD04_11955 IPR005256 Anthranilate synthase component I, PabB-like CLD04_11955 IPR015890 Chorismate-utilising enzyme, C-terminal CLD04_11955 IPR005801 ADC synthase CLD04_11955 IPR006805 Anthranilate synthase component I, N-terminal CLD04_11955 IPR019999 Anthranilate synthase component I-like CLD04_11960 IPR008243 Chorismate mutase, AroH class CLD04_11960 IPR035959 RutC-like superfamily CLD04_11965 IPR030963 3-dehydroquinate synthase family CLD04_11965 IPR016037 3-dehydroquinate synthase AroB CLD04_11965 IPR030960 3-dehydroquinate synthase domain CLD04_11970 IPR020541 Chorismate synthase, conserved site CLD04_11970 IPR035904 Chorismate synthase AroC superfamily CLD04_11970 IPR000453 Chorismate synthase CLD04_11975 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_11975 IPR022641 Chemotaxis receptor methyltransferase CheR, N-terminal CLD04_11975 IPR022642 MCP methyltransferase, CheR-type, SAM-binding domain, C-terminal CLD04_11975 IPR000780 MCP methyltransferase, CheR-type CLD04_11980 IPR034907 Nucleoside diphosphate kinase-like domain CLD04_11980 IPR023005 Nucleoside diphosphate kinase, active site CLD04_11980 IPR001564 Nucleoside diphosphate kinase CLD04_11980 IPR036850 Nucleoside diphosphate kinase-like domain superfamily CLD04_11985 IPR000092 Polyprenyl synthetase CLD04_11985 IPR033749 Polyprenyl synthetase, conserved site CLD04_11985 IPR008949 Isoprenoid synthase domain superfamily CLD04_11985 IPR014119 Heptaprenyl diphosphate synthase component II CLD04_11990 IPR023576 UbiE/COQ5 methyltransferase, conserved site CLD04_11990 IPR004033 UbiE/COQ5 methyltransferase CLD04_11990 IPR014122 Demethylmenaquinone methyltransferase CLD04_11990 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_11995 IPR009920 Heptaprenyl diphosphate synthase subunit 1 CLD04_12000 IPR023558 Tryptophan RNA-binding attenuator protein domain CLD04_12000 IPR000824 Transcription attenuation protein MtrB CLD04_12000 IPR016031 Tryptophan RNA-binding attenuator protein-like domain superfamily CLD04_12005 IPR018234 GTP cyclohydrolase I, conserved site CLD04_12005 IPR001474 GTP cyclohydrolase I CLD04_12005 IPR020602 GTP cyclohydrolase I domain CLD04_12010 IPR010992 Integration host factor (IHF)-like DNA-binding domain superfamily CLD04_12010 IPR000119 Histone-like DNA-binding protein CLD04_12010 IPR020816 Histone-like DNA-binding protein, conserved site CLD04_12015 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_12015 IPR014201 Sporulation stage IV, protein A CLD04_12025 IPR020076 Protein of unknown function DUF2768 CLD04_12030 IPR013328 6-phosphogluconate dehydrogenase, domain 2 CLD04_12030 IPR006109 Glycerol-3-phosphate dehydrogenase, NAD-dependent, C-terminal CLD04_12030 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CLD04_12030 IPR011128 Glycerol-3-phosphate dehydrogenase, NAD-dependent, N-terminal CLD04_12030 IPR006168 Glycerol-3-phosphate dehydrogenase, NAD-dependent CLD04_12030 IPR036291 NAD(P)-binding domain superfamily CLD04_12035 IPR005225 Small GTP-binding protein domain CLD04_12035 IPR032859 GTPase Der, C-terminal KH-domain-like CLD04_12035 IPR015946 K homology domain-like, alpha/beta CLD04_12035 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_12035 IPR006073 GTP binding domain CLD04_12035 IPR031166 EngA-type guanine nucleotide-binding (G) domain CLD04_12035 IPR016484 GTP-binding protein EngA CLD04_12045 IPR025918 YIEGIA protein CLD04_12050 IPR014617 Predicted membrane protein, Bacillus YphA type CLD04_12055 IPR025414 YpzI-like protein CLD04_12065 IPR000262 FMN-dependent dehydrogenase CLD04_12065 IPR011179 Isopentenyl-diphosphate delta-isomerase, FMN-dependent CLD04_12065 IPR013785 Aldolase-type TIM barrel CLD04_12070 IPR022967 RNA-binding domain, S1 CLD04_12070 IPR003029 S1 domain CLD04_12070 IPR012340 Nucleic acid-binding, OB-fold CLD04_12075 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_12075 IPR011994 Cytidylate kinase domain CLD04_12075 IPR003136 Cytidylate kinase CLD04_12080 IPR035281 Protein of unknown function DUF5359 CLD04_12085 IPR009926 Type III secretion system flagellar brake protein YcgR, N-terminal CLD04_12085 IPR009875 PilZ domain CLD04_12090 IPR014239 Spore germination YpeB CLD04_12090 IPR025711 PepSY domain CLD04_12095 IPR014224 Spore cortex-lytic enzyme SleB CLD04_12095 IPR042047 Cell wall hydrolase SleB, domain 1 CLD04_12095 IPR011105 Cell wall hydrolase, SleB CLD04_12095 IPR036366 PGBD superfamily CLD04_12095 IPR036365 PGBD-like superfamily CLD04_12095 IPR002477 Peptidoglycan binding-like CLD04_12100 IPR023596 Peptidase PrsW, archaeal/bacterial CLD04_12100 IPR026898 Intramembrane metalloprotease PrsW CLD04_12105 IPR023856 Bacillithiol biosynthesis thiol disulphide oxidoreductase, YpdA CLD04_12105 IPR036188 FAD/NAD(P)-binding domain superfamily CLD04_12110 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain CLD04_12110 IPR014362 Glutamate dehydrogenase CLD04_12110 IPR033922 NAD(P) binding domain of glutamate dehydrogenase CLD04_12110 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase CLD04_12110 IPR036291 NAD(P)-binding domain superfamily CLD04_12110 IPR033524 Leu/Phe/Val dehydrogenases active site CLD04_12110 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal CLD04_12115 IPR008681 Negative regulator of genetic competence, MecA CLD04_12115 IPR038471 MecA, C-terminal domain superfamily CLD04_12120 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type CLD04_12120 IPR029052 Metallo-dependent phosphatase-like CLD04_12125 IPR020210 Uncharacterised protein family, YpbF, transmembrane CLD04_12130 IPR036779 LysM domain superfamily CLD04_12130 IPR018392 LysM domain CLD04_12135 IPR003675 CAAX prenyl protease 2 CLD04_12140 IPR001650 Helicase, C-terminal CLD04_12140 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLD04_12140 IPR004589 DNA helicase, ATP-dependent, RecQ type CLD04_12140 IPR002464 DNA/RNA helicase, ATP-dependent, DEAH-box type, conserved site CLD04_12140 IPR011545 DEAD/DEAH box helicase domain CLD04_12140 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_12145 IPR029491 Helicase Helix-turn-helix domain CLD04_12145 IPR008308 Uncharacterised conserved protein UCP021350 CLD04_12145 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_12150 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLD04_12150 IPR001080 3Fe-4S ferredoxin CLD04_12155 IPR025720 ECF transporter, Riboflavin transporter RibU CLD04_12155 IPR024529 ECF transporter, substrate-specific component CLD04_12160 IPR006236 D-3-phosphoglycerate dehydrogenase CLD04_12160 IPR036291 NAD(P)-binding domain superfamily CLD04_12160 IPR002912 ACT domain CLD04_12160 IPR029009 Allosteric substrate binding domain superfamily CLD04_12160 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain CLD04_12160 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLD04_12160 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CLD04_12160 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 CLD04_12165 IPR018508 3-dehydroquinate dehydratase, active site CLD04_12165 IPR001381 3-dehydroquinate dehydratase type I CLD04_12165 IPR013785 Aldolase-type TIM barrel CLD04_12175 IPR013324 RNA polymerase sigma factor, region 3/4-like CLD04_12175 IPR013325 RNA polymerase sigma factor, region 2 CLD04_12175 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_12175 IPR007627 RNA polymerase sigma-70 region 2 CLD04_12175 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site CLD04_12175 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 CLD04_12175 IPR039425 RNA polymerase sigma-70 like CLD04_12175 IPR014284 RNA polymerase sigma-70 like domain CLD04_12180 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_12180 IPR003660 HAMP domain CLD04_12180 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_12180 IPR041328 ResE, histidine kinase sensor domain CLD04_12180 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLD04_12180 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLD04_12180 IPR000014 PAS domain CLD04_12180 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLD04_12180 IPR005467 Histidine kinase domain CLD04_12180 IPR013767 PAS fold CLD04_12180 IPR035965 PAS domain superfamily CLD04_12185 IPR001789 Signal transduction response regulator, receiver domain CLD04_12185 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_12185 IPR039420 Transcriptional regulatory protein WalR-like CLD04_12185 IPR011006 CheY-like superfamily CLD04_12185 IPR001867 OmpR/PhoB-type DNA-binding domain CLD04_12190 IPR017562 Cytochrome c-type biogenesis protein CcsA CLD04_12190 IPR002541 Cytochrome c assembly protein CLD04_12195 IPR007816 ResB-like domain CLD04_12200 IPR023555 Thiol-disulphide oxidoreductase ResA CLD04_12200 IPR017937 Thioredoxin, conserved site CLD04_12200 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant CLD04_12200 IPR013766 Thioredoxin domain CLD04_12200 IPR036249 Thioredoxin-like superfamily CLD04_12205 IPR036986 RNA-binding S4 domain superfamily CLD04_12205 IPR002942 RNA-binding S4 domain CLD04_12205 IPR006145 Pseudouridine synthase, RsuA/RluA CLD04_12205 IPR020103 Pseudouridine synthase, catalytic domain superfamily CLD04_12205 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain CLD04_12205 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site CLD04_12205 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F CLD04_12210 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain CLD04_12215 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain CLD04_12220 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal CLD04_12220 IPR012338 Beta-lactamase/transpeptidase-like CLD04_12220 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A CLD04_12220 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal CLD04_12225 IPR025013 Protein of unknown function DUF3907 CLD04_12230 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_12230 IPR005234 Chromosome segregation/condensation protein ScpB CLD04_12230 IPR036390 Winged helix DNA-binding domain superfamily CLD04_12235 IPR023093 ScpA-like, C-terminal CLD04_12235 IPR003768 Segregation and condensation protein A CLD04_12240 IPR005500 Protein of unknown function DUF309 CLD04_12240 IPR023203 TTHA0068-like superfamily CLD04_12245 IPR016181 Acyl-CoA N-acyltransferase CLD04_12245 IPR000182 GNAT domain CLD04_12250 IPR034964 Lumazine synthase CLD04_12250 IPR036467 Lumazine/riboflavin synthase superfamily CLD04_12250 IPR002180 Lumazine/riboflavin synthase CLD04_12255 IPR016299 Riboflavin biosynthesis protein RibBA CLD04_12255 IPR036144 RibA-like superfamily CLD04_12255 IPR000926 GTP cyclohydrolase II, RibA CLD04_12255 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily CLD04_12255 IPR000422 3,4-dihydroxy-2-butanone 4-phosphate synthase, RibB CLD04_12255 IPR032677 GTP cyclohydrolase II CLD04_12260 IPR017938 Riboflavin synthase-like beta-barrel CLD04_12260 IPR026017 Lumazine-binding domain CLD04_12260 IPR001783 Lumazine-binding protein CLD04_12260 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily CLD04_12265 IPR004794 Riboflavin biosynthesis protein RibD CLD04_12265 IPR016193 Cytidine deaminase-like CLD04_12265 IPR016192 APOBEC/CMP deaminase, zinc-binding CLD04_12265 IPR002125 Cytidine and deoxycytidylate deaminase domain CLD04_12265 IPR024072 Dihydrofolate reductase-like domain superfamily CLD04_12265 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal CLD04_12265 IPR011549 Riboflavin-specific deaminase, C-terminal CLD04_12275 IPR019758 Peptidase S26A, signal peptidase I, conserved site CLD04_12275 IPR019757 Peptidase S26A, signal peptidase I, lysine active site CLD04_12275 IPR019756 Peptidase S26A, signal peptidase I, serine active site CLD04_12275 IPR019533 Peptidase S26 CLD04_12275 IPR036286 LexA/Signal peptidase-like superfamily CLD04_12275 IPR000223 Peptidase S26A, signal peptidase I CLD04_12285 IPR018652 Protein of unknown function DUF2082, nucleic-acid-binding, Zn-ribbon CLD04_12290 IPR019618 Spore germination protein GerPA/GerPF CLD04_12295 IPR029000 Cyclophilin-like domain superfamily CLD04_12295 IPR024936 Cyclophilin-type peptidyl-prolyl cis-trans isomerase CLD04_12295 IPR020892 Cyclophilin-type peptidyl-prolyl cis-trans isomerase, conserved site CLD04_12295 IPR002130 Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain CLD04_12305 IPR009343 Protein of unknown function DUF1002 CLD04_12310 IPR000183 Ornithine/DAP/Arg decarboxylase CLD04_12310 IPR002986 Diaminopimelate decarboxylase, LysA CLD04_12310 IPR022643 Orn/DAP/Arg decarboxylase 2, C-terminal CLD04_12310 IPR022657 Orn/DAP/Arg decarboxylase 2, conserved site CLD04_12310 IPR029066 PLP-binding barrel CLD04_12310 IPR009006 Alanine racemase/group IV decarboxylase, C-terminal CLD04_12310 IPR022653 Orn/DAP/Arg decarboxylase 2, pyridoxal-phosphate binding site CLD04_12310 IPR022644 Orn/DAP/Arg decarboxylase 2, N-terminal CLD04_12315 IPR004995 Bacillus/Clostridium Ger spore germination protein CLD04_12320 IPR025914 Stage V sporulation protein AE CLD04_12325 IPR005562 SpoVA CLD04_12325 IPR014204 Sporulation stage V, protein AE CLD04_12330 IPR010894 Stage V sporulation AD CLD04_12330 IPR038369 Stage V sporulation AD superfamily CLD04_12330 IPR016039 Thiolase-like CLD04_12335 IPR005562 SpoVA CLD04_12335 IPR014203 Sporulation stage V, protein AC CLD04_12340 IPR020144 Stage V sporulation protein AB CLD04_12345 IPR021997 Stage V sporulation protein AA CLD04_12345 IPR038548 Stage V sporulation protein AA, N-terminal domain superfamily CLD04_12350 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_12350 IPR013324 RNA polymerase sigma factor, region 3/4-like CLD04_12350 IPR007627 RNA polymerase sigma-70 region 2 CLD04_12350 IPR007630 RNA polymerase sigma-70 region 4 CLD04_12350 IPR013325 RNA polymerase sigma factor, region 2 CLD04_12350 IPR014236 RNA polymerase sigma-F type CLD04_12350 IPR014322 RNA polymerase sigma-B/F/G type CLD04_12350 IPR000943 RNA polymerase sigma-70 CLD04_12350 IPR007624 RNA polymerase sigma-70 region 3 CLD04_12350 IPR014284 RNA polymerase sigma-70 like domain CLD04_12355 IPR010194 Anti-sigma F factor CLD04_12355 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_12355 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_12360 IPR036513 STAS domain superfamily CLD04_12360 IPR014237 Anti-sigma F factor antagonist CLD04_12360 IPR002645 STAS domain CLD04_12360 IPR003658 Anti-sigma factor antagonist CLD04_12365 IPR037167 D-Ala-D-Ala carboxypeptidase, C-terminal domain superfamily CLD04_12365 IPR001967 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A, N-terminal CLD04_12365 IPR012907 Peptidase S11, D-Ala-D-Ala carboxypeptidase A, C-terminal CLD04_12365 IPR018044 Peptidase S11, D-alanyl-D-alanine carboxypeptidase A CLD04_12365 IPR015956 Penicillin-binding protein, C-terminal domain superfamily CLD04_12365 IPR012338 Beta-lactamase/transpeptidase-like CLD04_12370 IPR011268 Purine nucleoside phosphorylase CLD04_12370 IPR000845 Nucleoside phosphorylase domain CLD04_12370 IPR035994 Nucleoside phosphorylase superfamily CLD04_12370 IPR011270 Purine nucleoside phosphorylase I, inosine/guanosine-specific CLD04_12370 IPR018099 Purine phosphorylase, family 2, conserved site CLD04_12375 IPR017850 Alkaline-phosphatase-like, core domain superfamily CLD04_12375 IPR024052 Phosphopentomutase DeoB cap domain superfamily CLD04_12375 IPR010045 Phosphopentomutase CLD04_12375 IPR006124 Metalloenzyme CLD04_12380 IPR023009 Tyrosine recombinase XerC/XerD CLD04_12380 IPR011932 Tyrosine recombinase XerD CLD04_12380 IPR004107 Integrase, SAM-like, N-terminal CLD04_12380 IPR010998 Integrase/recombinase, N-terminal CLD04_12380 IPR002104 Integrase, catalytic domain CLD04_12380 IPR013762 Integrase-like, catalytic domain superfamily CLD04_12380 IPR011010 DNA breaking-rejoining enzyme, catalytic core CLD04_12385 IPR025321 Protein of unknown function DUF4227 CLD04_12390 IPR002481 Ferric-uptake regulator CLD04_12390 IPR036390 Winged helix DNA-binding domain superfamily CLD04_12390 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_12395 IPR014196 Stage II sporulation protein M CLD04_12395 IPR002798 Stage II sporulation protein M-like CLD04_12405 IPR037062 Malic enzyme, N-terminal domain superfamily CLD04_12405 IPR012301 Malic enzyme, N-terminal domain CLD04_12405 IPR002912 ACT domain CLD04_12405 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain CLD04_12405 IPR036291 NAD(P)-binding domain superfamily CLD04_12405 IPR001891 Malic oxidoreductase CLD04_12405 IPR012302 Malic enzyme, NAD-binding CLD04_12405 IPR015884 Malic enzyme, conserved site CLD04_12410 IPR004770 Na+/H+ antiporter NhaC CLD04_12410 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal CLD04_12415 IPR022761 Fumarate lyase, N-terminal CLD04_12415 IPR008948 L-Aspartase-like CLD04_12415 IPR000362 Fumarate lyase family CLD04_12415 IPR018951 Fumarase C, C-terminal CLD04_12415 IPR024083 Fumarase/histidase, N-terminal CLD04_12415 IPR004708 Aspartate ammonia-lyase CLD04_12415 IPR020557 Fumarate lyase, conserved site CLD04_12420 IPR041725 Type I (cytosolic) L-asparaginase CLD04_12420 IPR027474 L-asparaginase, N-terminal CLD04_12420 IPR027473 L-asparaginase, C-terminal CLD04_12420 IPR006033 Type I L-asparaginase family CLD04_12420 IPR027475 Asparaginase/glutaminase, active site 2 CLD04_12420 IPR020827 Asparaginase/glutaminase, active site 1 CLD04_12420 IPR006034 Asparaginase/glutaminase-like CLD04_12420 IPR036152 Asparaginase/glutaminase-like superfamily CLD04_12420 IPR037152 L-asparaginase, N-terminal domain superfamily CLD04_12420 IPR040919 Asparaginase/glutaminase, C-terminal CLD04_12425 IPR001387 Cro/C1-type helix-turn-helix domain CLD04_12425 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLD04_12430 IPR005287 Conserved hypothetical protein CHP00375 CLD04_12430 IPR010994 RuvA domain 2-like CLD04_12430 IPR016195 Polymerase/histidinol phosphatase-like CLD04_12435 IPR020476 NUDIX hydrolase CLD04_12435 IPR015797 NUDIX hydrolase-like domain superfamily CLD04_12435 IPR020084 NUDIX hydrolase, conserved site CLD04_12435 IPR000086 NUDIX hydrolase domain CLD04_12440 IPR025177 Cell division inhibitor MciZ CLD04_12445 IPR023210 NADP-dependent oxidoreductase domain CLD04_12445 IPR036812 NADP-dependent oxidoreductase domain superfamily CLD04_12445 IPR020471 Aldo/keto reductase CLD04_12450 IPR024980 Protein of unknown function DUF3886 CLD04_12455 IPR029058 Alpha/Beta hydrolase fold CLD04_12455 IPR022742 Serine aminopeptidase, S33 CLD04_12460 IPR020157 Uncharacterised protein family YqkC CLD04_12465 IPR035903 HesB-like domain superfamily CLD04_12465 IPR000361 FeS cluster biogenesis CLD04_12475 IPR007138 Antibiotic biosynthesis monooxygenase domain CLD04_12475 IPR011008 Dimeric alpha-beta barrel CLD04_12480 IPR000182 GNAT domain CLD04_12480 IPR017255 Acetyltransferase, GNAT, predicted CLD04_12480 IPR016181 Acyl-CoA N-acyltransferase CLD04_12485 IPR014962 YolD-like protein CLD04_12490 IPR017961 DNA polymerase, Y-family, little finger domain CLD04_12490 IPR001126 UmuC domain CLD04_12490 IPR022880 DNA polymerase IV CLD04_12490 IPR036775 DNA polymerase, Y-family, little finger domain superfamily CLD04_12495 IPR025546 YqzH-like protein CLD04_12500 IPR011701 Major facilitator superfamily CLD04_12500 IPR020846 Major facilitator superfamily domain CLD04_12500 IPR005829 Sugar transporter, conserved site CLD04_12500 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG CLD04_12500 IPR036259 MFS transporter superfamily CLD04_12510 IPR037523 Vicinal oxygen chelate (VOC) domain CLD04_12510 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CLD04_12515 IPR006083 Phosphoribulokinase/uridine kinase CLD04_12515 IPR004566 Pantothenate kinase CLD04_12515 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_12520 IPR001926 Pyridoxal-phosphate dependent enzyme CLD04_12520 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site CLD04_12520 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CLD04_12520 IPR011780 D-serine ammonia-lyase CLD04_12525 IPR036291 NAD(P)-binding domain superfamily CLD04_12525 IPR020904 Short-chain dehydrogenase/reductase, conserved site CLD04_12525 IPR002347 Short-chain dehydrogenase/reductase SDR CLD04_12530 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLD04_12530 IPR001279 Metallo-beta-lactamase CLD04_12535 IPR000304 Pyrroline-5-carboxylate reductase CLD04_12535 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CLD04_12535 IPR036291 NAD(P)-binding domain superfamily CLD04_12535 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal CLD04_12535 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain CLD04_12540 IPR002933 Peptidase M20 CLD04_12540 IPR012166 Uncharacterised protein family RocB CLD04_12545 IPR013785 Aldolase-type TIM barrel CLD04_12545 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal CLD04_12545 IPR023663 NADPH dehydrogenase CLD04_12550 IPR022742 Serine aminopeptidase, S33 CLD04_12550 IPR029058 Alpha/Beta hydrolase fold CLD04_12555 IPR038584 Ribosomal protein L33 superfamily CLD04_12555 IPR018264 Ribosomal protein L33, conserved site CLD04_12555 IPR001705 Ribosomal protein L33 CLD04_12555 IPR011332 Zinc-binding ribosomal protein CLD04_12560 IPR001279 Metallo-beta-lactamase CLD04_12560 IPR013471 Ribonuclease Z/BN CLD04_12560 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLD04_12565 IPR036291 NAD(P)-binding domain superfamily CLD04_12565 IPR022674 Glucose-6-phosphate dehydrogenase, NAD-binding CLD04_12565 IPR019796 Glucose-6-phosphate dehydrogenase, active site CLD04_12565 IPR001282 Glucose-6-phosphate dehydrogenase CLD04_12565 IPR022675 Glucose-6-phosphate dehydrogenase, C-terminal CLD04_12570 IPR013328 6-phosphogluconate dehydrogenase, domain 2 CLD04_12570 IPR006114 6-phosphogluconate dehydrogenase, C-terminal CLD04_12570 IPR006183 6-phosphogluconate dehydrogenase CLD04_12570 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding CLD04_12570 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating CLD04_12570 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CLD04_12570 IPR036291 NAD(P)-binding domain superfamily CLD04_12570 IPR006184 6-phosphogluconate-binding site CLD04_12575 IPR001126 UmuC domain CLD04_12575 IPR022880 DNA polymerase IV CLD04_12575 IPR036775 DNA polymerase, Y-family, little finger domain superfamily CLD04_12575 IPR024728 DNA polymerase type-Y, HhH motif CLD04_12575 IPR017961 DNA polymerase, Y-family, little finger domain CLD04_12585 IPR028055 Membrane insertase YidC/Oxa1, C-terminal CLD04_12585 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 CLD04_12585 IPR023060 Membrane insertase YidC/YidC1/YidC2, Firmicutes CLD04_12590 IPR018644 Protein of unknown function DUF2071 CLD04_12590 IPR023375 Acetoacetate decarboxylase domain superfamily CLD04_12595 IPR011650 Peptidase M20, dimerisation domain CLD04_12595 IPR008007 Peptidase M42 CLD04_12595 IPR002933 Peptidase M20 CLD04_12595 IPR010162 Peptidase M20B, peptidase T-like CLD04_12595 IPR036264 Bacterial exopeptidase dimerisation domain CLD04_12595 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site CLD04_12605 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CLD04_12605 IPR018146 Glyoxalase I, conserved site CLD04_12605 IPR017515 Methylmalonyl-CoA epimerase CLD04_12605 IPR037523 Vicinal oxygen chelate (VOC) domain CLD04_12610 IPR038063 L,D-transpeptidase catalytic domain-like CLD04_12610 IPR005490 L,D-transpeptidase catalytic domain CLD04_12615 IPR021062 Putative aromatic acid exporter, C-terminal CLD04_12615 IPR010343 Aromatic acid exporter family member 1 CLD04_12615 IPR038323 Putative aromatic acid exporter, C-terminal domain superfamily CLD04_12620 IPR003439 ABC transporter-like CLD04_12620 IPR003593 AAA+ ATPase domain CLD04_12620 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type CLD04_12620 IPR017871 ABC transporter, conserved site CLD04_12620 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_12625 IPR035906 MetI-like superfamily CLD04_12625 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_12625 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain CLD04_12630 IPR001320 Ionotropic glutamate receptor CLD04_12630 IPR018313 Solute-binding protein family 3, conserved site CLD04_12630 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CLD04_12635 IPR036249 Thioredoxin-like superfamily CLD04_12635 IPR009474 Putative bacilliredoxin, YphP/YqiW family CLD04_12640 IPR001206 Diacylglycerol kinase, catalytic domain CLD04_12640 IPR005218 Diacylglycerol/lipid kinase CLD04_12640 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal CLD04_12640 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily CLD04_12645 IPR020846 Major facilitator superfamily domain CLD04_12645 IPR005829 Sugar transporter, conserved site CLD04_12645 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG CLD04_12645 IPR036259 MFS transporter superfamily CLD04_12645 IPR011701 Major facilitator superfamily CLD04_12650 IPR009061 Putative DNA-binding domain superfamily CLD04_12650 IPR029442 GyrI-like small molecule binding domain CLD04_12650 IPR000551 MerR-type HTH domain CLD04_12650 IPR011256 Regulatory factor, effector binding domain superfamily CLD04_12655 IPR011053 Single hybrid motif CLD04_12655 IPR004167 Peripheral subunit-binding domain CLD04_12655 IPR036625 E3-binding domain superfamily CLD04_12655 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CLD04_12655 IPR001078 2-oxoacid dehydrogenase acyltransferase, catalytic domain CLD04_12655 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site CLD04_12655 IPR000089 Biotin/lipoyl attachment CLD04_12660 IPR005475 Transketolase-like, pyrimidine-binding domain CLD04_12660 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II CLD04_12660 IPR033248 Transketolase, C-terminal domain CLD04_12660 IPR029061 Thiamin diphosphate-binding fold CLD04_12665 IPR001017 Dehydrogenase, E1 component CLD04_12665 IPR029061 Thiamin diphosphate-binding fold CLD04_12670 IPR006258 Dihydrolipoamide dehydrogenase CLD04_12670 IPR036188 FAD/NAD(P)-binding domain superfamily CLD04_12670 IPR012999 Pyridine nucleotide-disulphide oxidoreductase, class I, active site CLD04_12670 IPR004099 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CLD04_12670 IPR001100 Pyridine nucleotide-disulphide oxidoreductase, class I CLD04_12670 IPR023753 FAD/NAD(P)-binding domain CLD04_12670 IPR016156 FAD/NAD-linked reductase, dimerisation domain superfamily CLD04_12675 IPR023865 Aliphatic acid kinase, short-chain, conserved site CLD04_12675 IPR000890 Aliphatic acid kinase, short-chain CLD04_12675 IPR011245 Butyrate kinase CLD04_12680 IPR036291 NAD(P)-binding domain superfamily CLD04_12680 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain CLD04_12680 IPR016211 Glutamate/phenylalanine/leucine/valine dehydrogenase, bacterial/archaeal CLD04_12680 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal CLD04_12680 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase CLD04_12680 IPR033524 Leu/Phe/Val dehydrogenases active site CLD04_12685 IPR012147 Phosphate acetyl/butyryltransferase CLD04_12685 IPR014079 Phosphate butyryltransferase CLD04_12685 IPR002505 Phosphate acetyl/butaryl transferase CLD04_12690 IPR035965 PAS domain superfamily CLD04_12690 IPR025944 Sigma-54 interaction domain, conserved site CLD04_12690 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CLD04_12690 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_12690 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CLD04_12690 IPR000014 PAS domain CLD04_12690 IPR002078 RNA polymerase sigma factor 54 interaction domain CLD04_12690 IPR003593 AAA+ ATPase domain CLD04_12690 IPR009057 Homeobox-like domain superfamily CLD04_12690 IPR013767 PAS fold CLD04_12690 IPR002197 DNA binding HTH domain, Fis-type CLD04_12690 IPR036291 NAD(P)-binding domain superfamily CLD04_12695 IPR020138 Uncharacterised protein family YqzF CLD04_12700 IPR039556 ICL/PEPM domain CLD04_12700 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily CLD04_12700 IPR018523 Isocitrate lyase/phosphorylmutase, conserved site CLD04_12700 IPR040442 Pyruvate kinase-like domain superfamily CLD04_12700 IPR012695 2-methylisocitrate lyase CLD04_12705 IPR012705 2-methylcitrate dehydratase PrpD CLD04_12705 IPR042183 MmgE/PrpD superfamily, domain 1 CLD04_12705 IPR036148 MmgE/PrpD superfamily CLD04_12705 IPR042188 MmgE/PrpD superfamily, domain 2 CLD04_12705 IPR005656 MmgE/PrpD CLD04_12710 IPR002020 Citrate synthase CLD04_12710 IPR016143 Citrate synthase-like, small alpha subdomain CLD04_12710 IPR019810 Citrate synthase active site CLD04_12710 IPR024176 Citrate synthase, bacterial-type CLD04_12710 IPR036969 Citrate synthase superfamily CLD04_12710 IPR016142 Citrate synthase-like, large alpha subdomain CLD04_12715 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily CLD04_12715 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily CLD04_12715 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal CLD04_12715 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain CLD04_12715 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal CLD04_12715 IPR006089 Acyl-CoA dehydrogenase, conserved site CLD04_12715 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal CLD04_12720 IPR036291 NAD(P)-binding domain superfamily CLD04_12720 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding CLD04_12720 IPR006180 3-hydroxyacyl-CoA dehydrogenase, conserved site CLD04_12720 IPR022694 3-hydroxyacyl-CoA dehydrogenase CLD04_12720 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal CLD04_12720 IPR013328 6-phosphogluconate dehydrogenase, domain 2 CLD04_12720 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CLD04_12725 IPR016039 Thiolase-like CLD04_12725 IPR020610 Thiolase, active site CLD04_12725 IPR020615 Thiolase, acyl-enzyme intermediate active site CLD04_12725 IPR020617 Thiolase, C-terminal CLD04_12725 IPR020616 Thiolase, N-terminal CLD04_12725 IPR020613 Thiolase, conserved site CLD04_12725 IPR002155 Thiolase CLD04_12730 IPR030395 Glycerophosphodiester phosphodiesterase domain CLD04_12730 IPR017946 PLC-like phosphodiesterase, TIM beta/alpha-barrel domain superfamily CLD04_12735 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain CLD04_12745 IPR013785 Aldolase-type TIM barrel CLD04_12745 IPR001155 NADH:flavin oxidoreductase/NADH oxidase, N-terminal CLD04_12750 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_12750 IPR016032 Signal transduction response regulator, C-terminal effector CLD04_12750 IPR011006 CheY-like superfamily CLD04_12750 IPR001789 Signal transduction response regulator, receiver domain CLD04_12750 IPR012052 Sporulation transcription factor Spo0A CLD04_12750 IPR014879 Sporulation initiation factor Spo0A, C-terminal CLD04_12755 IPR001478 PDZ domain CLD04_12755 IPR041489 PDZ domain 6 CLD04_12755 IPR036034 PDZ superfamily CLD04_12755 IPR014219 Peptidase S55, sporulation stage IV, protein B CLD04_12755 IPR009003 Peptidase S1, PA clan CLD04_12755 IPR008763 Peptidase S55, SpoIVB CLD04_12760 IPR038729 Rad50/SbcC-type AAA domain CLD04_12760 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_12760 IPR004604 DNA recombination/repair protein RecN CLD04_12765 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_12765 IPR036390 Winged helix DNA-binding domain superfamily CLD04_12765 IPR020899 Arginine repressor, C-terminal CLD04_12765 IPR001669 Arginine repressor CLD04_12765 IPR036251 Arginine repressor, C-terminal domain superfamily CLD04_12765 IPR020900 Arginine repressor, DNA-binding domain CLD04_12770 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_12770 IPR036986 RNA-binding S4 domain superfamily CLD04_12770 IPR002942 RNA-binding S4 domain CLD04_12770 IPR002877 Ribosomal RNA methyltransferase FtsJ domain CLD04_12770 IPR004538 Haemolysin A /rRNA methyltransferase TlyA CLD04_12775 IPR033248 Transketolase, C-terminal domain CLD04_12775 IPR020826 Transketolase binding site CLD04_12775 IPR005475 Transketolase-like, pyrimidine-binding domain CLD04_12775 IPR005474 Transketolase, N-terminal CLD04_12775 IPR029061 Thiamin diphosphate-binding fold CLD04_12775 IPR005477 Deoxyxylulose-5-phosphate synthase CLD04_12775 IPR009014 Transketolase C-terminal/Pyruvate-ferredoxin oxidoreductase domain II CLD04_12780 IPR033749 Polyprenyl synthetase, conserved site CLD04_12780 IPR000092 Polyprenyl synthetase CLD04_12780 IPR008949 Isoprenoid synthase domain superfamily CLD04_12785 IPR037004 Exonuclease VII, small subunit superfamily CLD04_12785 IPR003761 Exonuclease VII, small subunit CLD04_12790 IPR003753 Exonuclease VII, large subunit CLD04_12790 IPR020579 Exonuclease VII, large subunit, C-terminal CLD04_12790 IPR025824 OB-fold nucleic acid binding domain CLD04_12795 IPR020630 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CLD04_12795 IPR020631 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CLD04_12795 IPR020867 Tetrahydrofolate dehydrogenase/cyclohydrolase, conserved site CLD04_12795 IPR000672 Tetrahydrofolate dehydrogenase/cyclohydrolase CLD04_12795 IPR036291 NAD(P)-binding domain superfamily CLD04_12800 IPR006027 NusB/RsmB/TIM44 CLD04_12800 IPR035926 NusB-like superfamily CLD04_12800 IPR011605 NusB antitermination factor CLD04_12805 IPR005531 Alkaline shock protein Asp23 CLD04_12810 IPR011761 ATP-grasp fold CLD04_12810 IPR005481 Biotin carboxylase-like, N-terminal domain CLD04_12810 IPR011764 Biotin carboxylation domain CLD04_12810 IPR005482 Biotin carboxylase, C-terminal CLD04_12810 IPR004549 Acetyl-CoA carboxylase, biotin carboxylase CLD04_12810 IPR016185 Pre-ATP-grasp domain superfamily CLD04_12810 IPR005479 Carbamoyl-phosphate synthetase large subunit-like, ATP-binding domain CLD04_12810 IPR011054 Rudiment single hybrid motif CLD04_12815 IPR001249 Acetyl-CoA biotin carboxyl carrier CLD04_12815 IPR001882 Biotin-binding site CLD04_12815 IPR011053 Single hybrid motif CLD04_12815 IPR000089 Biotin/lipoyl attachment CLD04_12820 IPR038503 Stage III sporulation protein AH-like superfamily CLD04_12820 IPR024232 Stage III sporulation protein AH-like CLD04_12825 IPR014195 Sporulation stage III, protein AG CLD04_12830 IPR014245 Sporulation stage III, protein AF CLD04_12835 IPR014194 Sporulation stage III, protein AE CLD04_12840 IPR025664 Stage III sporulation protein AC/AD family CLD04_12840 IPR014211 Stage III sporulation protein AD CLD04_12845 IPR025664 Stage III sporulation protein AC/AD family CLD04_12845 IPR009570 Stage III sporulation protein AC CLD04_12850 IPR014198 Stage III sporulation protein AB CLD04_12855 IPR014217 Sporulation stage III, protein AA CLD04_12855 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_12855 IPR003593 AAA+ ATPase domain CLD04_12860 IPR020390 Uncharacterised protein family YqhV CLD04_12865 IPR015365 Elongation factor P, C-terminal CLD04_12865 IPR013185 Translation elongation factor, KOW-like CLD04_12865 IPR020599 Translation elongation factor P/YeiP CLD04_12865 IPR008991 Translation protein SH3-like domain superfamily CLD04_12865 IPR011768 Translation elongation factor P CLD04_12865 IPR012340 Nucleic acid-binding, OB-fold CLD04_12865 IPR014722 Ribosomal protein L2, domain 2 CLD04_12865 IPR001059 Translation elongation factor P/YeiP, central CLD04_12865 IPR013852 Translation elongation factor P/YeiP, conserved site CLD04_12870 IPR001131 Peptidase M24B, X-Pro dipeptidase/aminopeptidase P, conserved site CLD04_12870 IPR001714 Peptidase M24, methionine aminopeptidase CLD04_12870 IPR036005 Creatinase/aminopeptidase-like CLD04_12870 IPR000994 Peptidase M24 CLD04_12870 IPR000587 Creatinase, N-terminal CLD04_12870 IPR029149 Creatinase/Aminopeptidase P/Spt16, N-terminal CLD04_12875 IPR018509 Dehydroquinase, class II, conserved site CLD04_12875 IPR001874 Dehydroquinase, class II CLD04_12875 IPR036441 Dehydroquinase, class II superfamily CLD04_12880 IPR024563 Uncharacterised protein family YqhR CLD04_12885 IPR010787 Protein of unknown function DUF1385 CLD04_12895 IPR002641 Patatin-like phospholipase domain CLD04_12895 IPR016035 Acyl transferase/acyl hydrolase/lysophospholipase CLD04_12900 IPR022689 Iron dependent repressor CLD04_12900 IPR022897 HTH-type transcription regulator MntR CLD04_12900 IPR022687 DTXR-type HTH domain CLD04_12900 IPR036390 Winged helix DNA-binding domain superfamily CLD04_12900 IPR036421 Iron dependent repressor, metal binding and dimerisation domain superfamily CLD04_12900 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_12900 IPR001367 Iron dependent repressor, metal binding and dimerisation domain CLD04_12905 IPR024898 Octanoyltransferase LipM CLD04_12905 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain CLD04_12910 IPR036873 Rhodanese-like domain superfamily CLD04_12910 IPR001763 Rhodanese-like domain CLD04_12915 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_12915 IPR023012 Probable glycine dehydrogenase (decarboxylating) subunit 2 CLD04_12915 IPR020581 Glycine cleavage system P protein CLD04_12915 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_12915 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_12920 IPR020581 Glycine cleavage system P protein CLD04_12920 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_12920 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_12920 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_12920 IPR023010 Probable glycine dehydrogenase (decarboxylating) subunit 1 CLD04_12925 IPR006223 Glycine cleavage system T protein CLD04_12925 IPR022903 Glycine cleavage system T protein, bacteria CLD04_12925 IPR028896 Aminomethyltransferase-like CLD04_12925 IPR013977 Glycine cleavage T-protein, C-terminal barrel domain CLD04_12925 IPR006222 Aminomethyltransferase, folate-binding domain CLD04_12925 IPR029043 Glycine cleavage T-protein/YgfZ, C-terminal CLD04_12925 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 CLD04_12930 IPR001650 Helicase, C-terminal CLD04_12930 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLD04_12930 IPR000330 SNF2-related, N-terminal domain CLD04_12930 IPR038718 SNF2-like, N-terminal domain superfamily CLD04_12930 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_12935 IPR024562 Uncharacterised protein family YqhG CLD04_12940 IPR010981 SinR repressor/SinI anti-repressor, dimerisation domain CLD04_12940 IPR036281 SinR repressor/SinI anti-repressor, dimerisation domain superfamily CLD04_12945 IPR036281 SinR repressor/SinI anti-repressor, dimerisation domain superfamily CLD04_12945 IPR010981 SinR repressor/SinI anti-repressor, dimerisation domain CLD04_12945 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLD04_12945 IPR001387 Cro/C1-type helix-turn-helix domain CLD04_12950 IPR023833 Signal peptide, camelysin CLD04_12950 IPR022121 Peptidase M73, camelysin CLD04_12955 IPR001733 Peptidase S26B CLD04_12955 IPR036286 LexA/Signal peptidase-like superfamily CLD04_12960 IPR023848 TasA anchoring/assembly protein CLD04_12960 IPR023833 Signal peptide, camelysin CLD04_12965 IPR024987 Protein of unknown function DUF3889 CLD04_12970 IPR025622 YqzE-like protein CLD04_12975 IPR020372 Competence operon G protein 7, ComGG CLD04_12980 IPR016977 Competence operon G, ComGF CLD04_12985 IPR012902 Prokaryotic N-terminal methylation site CLD04_12990 IPR002416 Type II secretion system protein H CLD04_12990 IPR016785 ComG operon protein 4 CLD04_12990 IPR012902 Prokaryotic N-terminal methylation site CLD04_12995 IPR016940 ComG operon protein C CLD04_12995 IPR012902 Prokaryotic N-terminal methylation site CLD04_13000 IPR042094 Type II secretion system F domain superfamily CLD04_13000 IPR001992 Type II secretion system conserved site CLD04_13000 IPR018076 Type II secretion system F domain CLD04_13000 IPR003004 GspF/PilC family CLD04_13005 IPR003593 AAA+ ATPase domain CLD04_13005 IPR001482 Type II/IV secretion system protein CLD04_13005 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_13015 IPR002523 Mg2+ transporter protein, CorA-like/Zinc transport protein ZntB CLD04_13020 IPR002550 CNNM, transmembrane domain CLD04_13020 IPR000644 CBS domain CLD04_13020 IPR036318 FAD-binding, type PCMH-like superfamily CLD04_13020 IPR005170 Transporter-associated domain CLD04_13020 IPR016169 FAD-binding, type PCMH, subdomain 2 CLD04_13025 IPR025751 RsbT co-antagonist protein RsbRD, N-terminal domain CLD04_13025 IPR002645 STAS domain CLD04_13025 IPR036513 STAS domain superfamily CLD04_13035 IPR006660 Arsenate reductase-like CLD04_13035 IPR036249 Thioredoxin-like superfamily CLD04_13035 IPR006504 Transcriptional regulator Spx/MgsR CLD04_13040 IPR020254 Protein of unknown function DUF2626 CLD04_13045 IPR001279 Metallo-beta-lactamase CLD04_13045 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLD04_13050 IPR024490 Protein of unknown function DUF2759 CLD04_13055 IPR002767 Thiamine-binding protein CLD04_13055 IPR029756 MTH1187/YkoF-like CLD04_13065 IPR034274 ENP1, carboxypeptidase domain CLD04_13065 IPR000834 Peptidase M14, carboxypeptidase A CLD04_13070 IPR012160 Lipoteichoic acid synthase-like CLD04_13070 IPR000917 Sulfatase, N-terminal CLD04_13070 IPR017850 Alkaline-phosphatase-like, core domain superfamily CLD04_13075 IPR004654 Glucokinase ROK CLD04_13075 IPR000600 ROK family CLD04_13080 IPR023164 YqgQ-like superfamily CLD04_13080 IPR009256 Protein of unknown function DUF910 CLD04_13085 IPR035952 Rhomboid-like superfamily CLD04_13085 IPR019734 Tetratricopeptide repeat CLD04_13085 IPR011990 Tetratricopeptide-like helical domain superfamily CLD04_13085 IPR013026 Tetratricopeptide repeat-containing domain CLD04_13085 IPR022764 Peptidase S54, rhomboid domain CLD04_13095 IPR002698 5-formyltetrahydrofolate cyclo-ligase CLD04_13095 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily CLD04_13095 IPR037171 NagB/RpiA transferase-like CLD04_13100 IPR001705 Ribosomal protein L33 CLD04_13100 IPR018264 Ribosomal protein L33, conserved site CLD04_13100 IPR011332 Zinc-binding ribosomal protein CLD04_13100 IPR038584 Ribosomal protein L33 superfamily CLD04_13105 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain CLD04_13105 IPR001296 Glycosyl transferase, family 1 CLD04_13125 IPR005670 Phosphate transport system permease protein 1 CLD04_13125 IPR015850 ABC transporter, phosphate import, PstB CLD04_13125 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_13125 IPR003593 AAA+ ATPase domain CLD04_13125 IPR003439 ABC transporter-like CLD04_13125 IPR017871 ABC transporter, conserved site CLD04_13130 IPR017871 ABC transporter, conserved site CLD04_13130 IPR015850 ABC transporter, phosphate import, PstB CLD04_13130 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_13130 IPR003439 ABC transporter-like CLD04_13130 IPR005670 Phosphate transport system permease protein 1 CLD04_13130 IPR003593 AAA+ ATPase domain CLD04_13135 IPR005672 Phosphate transport system permease protein PstA CLD04_13135 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_13135 IPR035906 MetI-like superfamily CLD04_13140 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_13140 IPR011864 Phosphate ABC transporter, permease protein PstC CLD04_13140 IPR035906 MetI-like superfamily CLD04_13145 IPR024370 PBP domain CLD04_13145 IPR011862 Phosphate binding protein CLD04_13155 IPR036259 MFS transporter superfamily CLD04_13155 IPR011701 Major facilitator superfamily CLD04_13160 IPR019832 Manganese/iron superoxide dismutase, C-terminal CLD04_13160 IPR019831 Manganese/iron superoxide dismutase, N-terminal CLD04_13160 IPR019833 Manganese/iron superoxide dismutase, binding site CLD04_13160 IPR001189 Manganese/iron superoxide dismutase CLD04_13160 IPR036324 Manganese/iron superoxide dismutase, N-terminal domain superfamily CLD04_13160 IPR036314 Manganese/iron superoxide dismutase, C-terminal domain superfamily CLD04_13165 IPR007403 Protein of unknown function DUF456 CLD04_13170 IPR009574 Protein of unknown function DUF1189 CLD04_13175 IPR018392 LysM domain CLD04_13180 IPR016425 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial CLD04_13180 IPR004588 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase, bacterial-type CLD04_13180 IPR011005 Dihydropteroate synthase-like CLD04_13190 IPR009206 Nucleotidase, putative CLD04_13190 IPR023214 HAD superfamily CLD04_13190 IPR036412 HAD-like superfamily CLD04_13195 IPR036390 Winged helix DNA-binding domain superfamily CLD04_13195 IPR002481 Ferric-uptake regulator CLD04_13195 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_13200 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CLD04_13200 IPR019264 Domain of unknown function DUF2179 CLD04_13200 IPR003740 Uncharacterised membrane protein YitT CLD04_13205 IPR020277 Protein of unknown function DUF2624 CLD04_13210 IPR036237 Xylose isomerase-like superfamily CLD04_13210 IPR013022 Xylose isomerase-like, TIM barrel domain CLD04_13210 IPR001719 AP endonuclease 2 CLD04_13210 IPR018246 AP endonuclease 2, zinc binding site CLD04_13215 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLD04_13215 IPR014014 RNA helicase, DEAD-box type, Q motif CLD04_13215 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_13215 IPR001650 Helicase, C-terminal CLD04_13215 IPR011545 DEAD/DEAH box helicase domain CLD04_13215 IPR030881 DEAD-box ATP-dependent RNA helicase CshB CLD04_13220 IPR025571 YqfQ-like protein CLD04_13225 IPR003451 4-hydroxy-3-methylbut-2-enyl diphosphate reductase CLD04_13235 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CLD04_13235 IPR017221 GTP cyclohydrolase 1 type 2//Nif3, bacteria CLD04_13235 IPR036069 GTP cyclohydrolase 1 type 2/Nif3 superfamily CLD04_13235 IPR002678 GTP cyclohydrolase 1 type 2/Nif3 CLD04_13240 IPR006901 tRNA methyltransferase TrmK CLD04_13240 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_13245 IPR009056 Cytochrome c-like domain CLD04_13245 IPR012218 Cytochrome c, Bacillus subtilis c550-related CLD04_13245 IPR036909 Cytochrome c-like domain superfamily CLD04_13255 IPR007127 RNA polymerase sigma factor 70, region 1.1 CLD04_13255 IPR014284 RNA polymerase sigma-70 like domain CLD04_13255 IPR000943 RNA polymerase sigma-70 CLD04_13255 IPR013325 RNA polymerase sigma factor, region 2 CLD04_13255 IPR007624 RNA polymerase sigma-70 region 3 CLD04_13255 IPR009042 RNA polymerase sigma-70 region 1.2 CLD04_13255 IPR042189 Sigma-70 factor, region 1.1 superfamily CLD04_13255 IPR013324 RNA polymerase sigma factor, region 3/4-like CLD04_13255 IPR007630 RNA polymerase sigma-70 region 4 CLD04_13255 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_13255 IPR007627 RNA polymerase sigma-70 region 2 CLD04_13255 IPR028630 RNA polymerase sigma factor RpoD CLD04_13255 IPR012760 RNA polymerase sigma factor RpoD, C-terminal CLD04_13260 IPR034151 Bacterial DnaG primase, TOPRIM domain CLD04_13260 IPR036977 DNA Primase, CHC2-type zinc finger CLD04_13260 IPR006171 TOPRIM domain CLD04_13260 IPR002694 Zinc finger, CHC2-type CLD04_13260 IPR013264 DNA primase, catalytic core, N-terminal CLD04_13260 IPR006295 DNA primase, DnaG CLD04_13260 IPR019475 DNA primase, DnaB-helicase binding domain CLD04_13260 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily CLD04_13260 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal CLD04_13260 IPR037068 DNA primase, catalytic core, N-terminal domain superfamily CLD04_13260 IPR030846 DNA primase DnaG, bacteria CLD04_13265 IPR003791 Protein of unknown function UPF0178 CLD04_13270 IPR005177 Bifunctional kinase-pyrophosphorylase CLD04_13270 IPR026565 Putative pyruvate, phosphate dikinase regulatory protein CLD04_13275 IPR036390 Winged helix DNA-binding domain superfamily CLD04_13275 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_13275 IPR013196 Helix-turn-helix, type 11 CLD04_13275 IPR000644 CBS domain CLD04_13275 IPR016842 Protein of unknown function UCP026546, HtH-CBS CLD04_13280 IPR006194 Glycine-tRNA synthetase, heterodimeric CLD04_13280 IPR015944 Glycine-tRNA ligase, beta subunit CLD04_13285 IPR006194 Glycine-tRNA synthetase, heterodimeric CLD04_13285 IPR002310 Glycine-tRNA ligase, alpha subunit CLD04_13290 IPR037278 ARFGAP/RecO-like zinc finger CLD04_13290 IPR022572 DNA replication/recombination mediator RecO, N-terminal CLD04_13290 IPR012340 Nucleic acid-binding, OB-fold CLD04_13290 IPR042242 Recombination protein O, zinc-binding domain CLD04_13290 IPR003717 Recombination protein O, RecO CLD04_13295 IPR025617 YqzL-like protein CLD04_13300 IPR030388 Era-type guanine nucleotide-binding (G) domain CLD04_13300 IPR004044 K Homology domain, type 2 CLD04_13300 IPR015946 K homology domain-like, alpha/beta CLD04_13300 IPR006073 GTP binding domain CLD04_13300 IPR005662 GTP-binding protein Era CLD04_13300 IPR009019 K homology domain superfamily, prokaryotic type CLD04_13300 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_13300 IPR005225 Small GTP-binding protein domain CLD04_13305 IPR016192 APOBEC/CMP deaminase, zinc-binding CLD04_13305 IPR002125 Cytidine and deoxycytidylate deaminase domain CLD04_13305 IPR006262 Cytidine deaminase, homotetrameric CLD04_13305 IPR016193 Cytidine deaminase-like CLD04_13310 IPR036945 Diacylglycerol kinase (DAGK) superfamily CLD04_13310 IPR033717 Undecaprenol kinase CLD04_13310 IPR000829 DAGK family CLD04_13315 IPR023091 Metalloprotease catalytic domain superfamily, predicted CLD04_13315 IPR020549 Endoribonuclease YbeY, conserved site CLD04_13315 IPR002036 Endoribonuclease YbeY CLD04_13320 IPR006675 HDIG domain CLD04_13320 IPR011621 Metal-dependent phosphohydrolase, 7TM intracellular domain CLD04_13320 IPR011624 Metal-dependent phosphohydrolase, 7TM extracellular domain CLD04_13320 IPR006674 HD domain CLD04_13320 IPR003607 HD/PDEase domain CLD04_13325 IPR003714 PhoH-like protein CLD04_13325 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_13330 IPR010690 Putative stage IV sporulation YqfD CLD04_13335 IPR022477 Sporulation protein YqfC CLD04_13335 IPR022476 Sporulation protein YabP/YqfC CLD04_13340 IPR016788 Uncharacterised conserved protein UCP021361 CLD04_13345 IPR022853 Uncharacterised protein family YdfA-immunity CLD04_13350 IPR029045 ClpP/crotonase-like domain superfamily CLD04_13350 IPR002825 Peptidase S49, serine-peptidase prokaryotes CLD04_13350 IPR002810 NfeD-like, C-terminal domain CLD04_13355 IPR042184 YqeY/Aim41, N-terminal domain CLD04_13355 IPR003789 Aspartyl/glutamyl-tRNA amidotransferase subunit B-like CLD04_13355 IPR023168 Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase, C-terminal, domain 2 CLD04_13355 IPR019004 Uncharacterised protein YqeY/Aim41 CLD04_13360 IPR038380 Ribosomal protein S21 superfamily CLD04_13360 IPR018278 Ribosomal protein S21, conserved site CLD04_13360 IPR001911 Ribosomal protein S21 CLD04_13365 IPR003841 Sodium-dependent phosphate transport protein CLD04_13365 IPR004633 Na/Pi-cotransporter II-related/YqeW-like protein CLD04_13370 IPR020612 Methylthiotransferase, conserved site CLD04_13370 IPR013848 Methylthiotransferase, N-terminal CLD04_13370 IPR038135 Methylthiotransferase, N-terminal domain superfamily CLD04_13370 IPR006467 MiaB-like tRNA modifying enzyme CLD04_13370 IPR007197 Radical SAM CLD04_13370 IPR023404 Radical SAM, alpha/beta horseshoe CLD04_13370 IPR002792 TRAM domain CLD04_13370 IPR006638 Elp3/MiaB/NifB CLD04_13370 IPR005839 Methylthiotransferase CLD04_13370 IPR034557 Threonylcarbamoyladenosine tRNA methylthiotransferase CLD04_13375 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CLD04_13375 IPR029028 Alpha/beta knot methyltransferases CLD04_13375 IPR006700 Ribosomal RNA small subunit methyltransferase E CLD04_13375 IPR015947 PUA-like superfamily CLD04_13380 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_13380 IPR004498 Ribosomal protein L11 methyltransferase CLD04_13385 IPR018253 DnaJ domain, conserved site CLD04_13385 IPR001623 DnaJ domain CLD04_13385 IPR002939 Chaperone DnaJ, C-terminal CLD04_13385 IPR008971 HSP40/DnaJ peptide-binding CLD04_13385 IPR012724 Chaperone DnaJ CLD04_13385 IPR001305 Heat shock protein DnaJ, cysteine-rich domain CLD04_13385 IPR036869 Chaperone J-domain superfamily CLD04_13385 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily CLD04_13390 IPR013126 Heat shock protein 70 family CLD04_13390 IPR029048 Heat shock protein 70kD, C-terminal domain superfamily CLD04_13390 IPR029047 Heat shock protein 70kD, peptide-binding domain superfamily CLD04_13390 IPR012725 Chaperone DnaK CLD04_13390 IPR018181 Heat shock protein 70, conserved site CLD04_13395 IPR000740 GrpE nucleotide exchange factor CLD04_13395 IPR013805 GrpE nucleotide exchange factor, coiled-coil CLD04_13395 IPR009012 GrpE nucleotide exchange factor, head CLD04_13400 IPR023120 Winged helix-turn-helix transcription repressor, HrcA, inserted dimerising domain superfamily CLD04_13400 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_13400 IPR021153 Heat-inducible transcription repressor HrcA, C-terminal CLD04_13400 IPR002571 Heat-inducible transcription repressor HrcA CLD04_13400 IPR029016 GAF-like domain superfamily CLD04_13400 IPR036390 Winged helix DNA-binding domain superfamily CLD04_13405 IPR004559 Heme chaperone HemW-like CLD04_13405 IPR006638 Elp3/MiaB/NifB CLD04_13405 IPR034505 Anaerobic coproporphyrinogen-III oxidase CLD04_13405 IPR023404 Radical SAM, alpha/beta horseshoe CLD04_13405 IPR007197 Radical SAM CLD04_13405 IPR010723 HemN, C-terminal CLD04_13410 IPR000640 Elongation factor EFG, domain V-like CLD04_13410 IPR038363 LepA, C-terminal domain superfamily CLD04_13410 IPR035654 Elongation factor 4, domain IV CLD04_13410 IPR000795 Transcription factor, GTP-binding domain CLD04_13410 IPR005225 Small GTP-binding protein domain CLD04_13410 IPR009000 Translation protein, beta-barrel domain superfamily CLD04_13410 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_13410 IPR031157 Tr-type G domain, conserved site CLD04_13410 IPR035647 EF-G domain III/V-like CLD04_13410 IPR004161 Translation elongation factor EFTu-like, domain 2 CLD04_13410 IPR013842 GTP-binding protein LepA, C-terminal CLD04_13410 IPR006297 Elongation factor 4 CLD04_13415 IPR020534 Uncharacterised protein family YqxA CLD04_13420 IPR010897 Sporulation stage II, protein P CLD04_13425 IPR023430 Peptidase HybD-like domain superfamily CLD04_13425 IPR005080 Peptidase A25, germination protease CLD04_13430 IPR002583 Ribosomal protein S20 CLD04_13430 IPR036510 Ribosomal protein S20 superfamily CLD04_13435 IPR010372 DNA polymerase III delta, N-terminal CLD04_13435 IPR005790 DNA polymerase III, delta subunit CLD04_13435 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_13435 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal CLD04_13440 IPR025416 YqzM-like protein CLD04_13445 IPR004797 Competence protein ComEC/Rec2 CLD04_13445 IPR001279 Metallo-beta-lactamase CLD04_13445 IPR004477 ComEC/Rec2-related protein CLD04_13445 IPR035681 ComA-like, MBL domain CLD04_13445 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLD04_13445 IPR025405 Domain of unknown function DUF4131 CLD04_13450 IPR016193 Cytidine deaminase-like CLD04_13450 IPR016192 APOBEC/CMP deaminase, zinc-binding CLD04_13450 IPR035105 Deoxycytidylate deaminase domain CLD04_13450 IPR002125 Cytidine and deoxycytidylate deaminase domain CLD04_13450 IPR015517 Deoxycytidylate deaminase-related CLD04_13450 IPR013404 Competence operon E, ComEB CLD04_13455 IPR010994 RuvA domain 2-like CLD04_13455 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 CLD04_13455 IPR004509 Competence protein ComEA, helix-hairpin-helix domain CLD04_13455 IPR019554 Soluble ligand binding domain CLD04_13455 IPR004787 Competence protein ComEA CLD04_13460 IPR028939 Pyrroline-5-carboxylate reductase, catalytic, N-terminal CLD04_13460 IPR029036 Pyrroline-5-carboxylate reductase, dimerisation domain CLD04_13460 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CLD04_13460 IPR036291 NAD(P)-binding domain superfamily CLD04_13460 IPR000304 Pyrroline-5-carboxylate reductase CLD04_13465 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_13465 IPR041698 Methyltransferase domain 25 CLD04_13470 IPR004394 Protein Iojap/ribosomal silencing factor RsfS CLD04_13475 IPR006674 HD domain CLD04_13475 IPR005249 Conserved hypothetical protein CHP00488 CLD04_13475 IPR003607 HD/PDEase domain CLD04_13480 IPR004821 Cytidyltransferase-like domain CLD04_13480 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLD04_13480 IPR005248 Nicotinate/nicotinamide nucleotide adenylyltransferase CLD04_13485 IPR001890 RNA-binding, CRM domain CLD04_13485 IPR017924 RNA-binding protein YhbY CLD04_13485 IPR035920 YhbY-like superfamily CLD04_13490 IPR036291 NAD(P)-binding domain superfamily CLD04_13490 IPR013708 Shikimate dehydrogenase substrate binding, N-terminal CLD04_13490 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase CLD04_13490 IPR022893 Shikimate dehydrogenase family CLD04_13490 IPR041121 SDH, C-terminal CLD04_13490 IPR011342 Shikimate dehydrogenase CLD04_13495 IPR006073 GTP binding domain CLD04_13495 IPR030378 Circularly permuted (CP)-type guanine nucleotide-binding (G) domain CLD04_13495 IPR019988 GTP-binding protein, riobosome biogenesis, YqeH CLD04_13495 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_13500 IPR006439 HAD hydrolase, subfamily IA CLD04_13500 IPR006549 HAD-superfamily hydrolase,subfamily IIIA CLD04_13500 IPR010021 HAD-superfamily phosphatase, YqeG-like CLD04_13500 IPR023214 HAD superfamily CLD04_13500 IPR036412 HAD-like superfamily CLD04_13505 IPR036916 Sporulation inhibitor A superfamily CLD04_13505 IPR015064 Sporulation inhibitor A CLD04_13510 IPR036514 SGNH hydrolase superfamily CLD04_13510 IPR001087 GDSL lipase/esterase CLD04_13520 IPR032816 SNARE associated Golgi protein CLD04_13520 IPR015414 Transmembrane protein TMEM64 CLD04_13525 IPR013328 6-phosphogluconate dehydrogenase, domain 2 CLD04_13525 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding CLD04_13525 IPR006184 6-phosphogluconate-binding site CLD04_13525 IPR036291 NAD(P)-binding domain superfamily CLD04_13525 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CLD04_13525 IPR004849 6-phosphogluconate dehydrogenase, YqeC-type CLD04_13525 IPR006114 6-phosphogluconate dehydrogenase, C-terminal CLD04_13525 IPR006183 6-phosphogluconate dehydrogenase CLD04_13535 IPR029476 Deoxyribonuclease NucA/NucB CLD04_13540 IPR007627 RNA polymerase sigma-70 region 2 CLD04_13540 IPR000943 RNA polymerase sigma-70 CLD04_13540 IPR013325 RNA polymerase sigma factor, region 2 CLD04_13540 IPR007630 RNA polymerase sigma-70 region 4 CLD04_13540 IPR014284 RNA polymerase sigma-70 like domain CLD04_13540 IPR013324 RNA polymerase sigma factor, region 3/4-like CLD04_13545 IPR003012 Tetracycline transcriptional regulator, TetR CLD04_13545 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CLD04_13545 IPR023772 DNA-binding HTH domain, TetR-type, conserved site CLD04_13545 IPR001647 DNA-binding HTH domain, TetR-type CLD04_13545 IPR004111 Tetracycline repressor TetR, C-terminal CLD04_13545 IPR009057 Homeobox-like domain superfamily CLD04_13555 IPR017853 Glycoside hydrolase superfamily CLD04_13555 IPR016714 Mannan endo-1,4-beta-mannosidase CLD04_13555 IPR000805 Glycoside hydrolase family 26 CLD04_13555 IPR022790 Glycosyl hydrolase family 26 domain CLD04_13560 IPR002781 Transmembrane protein TauE-like CLD04_13565 IPR001455 TusA-like domain CLD04_13565 IPR036868 TusA-like domain superfamily CLD04_13580 IPR001763 Rhodanese-like domain CLD04_13580 IPR036868 TusA-like domain superfamily CLD04_13580 IPR036873 Rhodanese-like domain superfamily CLD04_13580 IPR001455 TusA-like domain CLD04_13590 IPR032836 DsrE2-like family CLD04_13590 IPR027396 DsrEFH-like CLD04_13595 IPR003735 Metal-sensitive transcriptional repressor CLD04_13595 IPR038390 Metal-sensitive transcriptional repressor superfamily CLD04_13610 IPR014710 RmlC-like jelly roll fold CLD04_13610 IPR013096 Cupin 2, conserved barrel CLD04_13610 IPR011051 RmlC-like cupin domain superfamily CLD04_13625 IPR009061 Putative DNA-binding domain superfamily CLD04_13625 IPR000551 MerR-type HTH domain CLD04_13625 IPR011256 Regulatory factor, effector binding domain superfamily CLD04_13625 IPR029442 GyrI-like small molecule binding domain CLD04_13630 IPR005829 Sugar transporter, conserved site CLD04_13630 IPR011701 Major facilitator superfamily CLD04_13630 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG CLD04_13630 IPR036259 MFS transporter superfamily CLD04_13630 IPR020846 Major facilitator superfamily domain CLD04_13630 IPR004734 Multidrug resistance protein CLD04_13635 IPR000182 GNAT domain CLD04_13635 IPR016181 Acyl-CoA N-acyltransferase CLD04_13635 IPR027455 Spermine/spermidine acetyltransferase, N-terminal CLD04_13640 IPR002550 CNNM, transmembrane domain CLD04_13640 IPR000644 CBS domain CLD04_13640 IPR036318 FAD-binding, type PCMH-like superfamily CLD04_13640 IPR016169 FAD-binding, type PCMH, subdomain 2 CLD04_13640 IPR005170 Transporter-associated domain CLD04_13645 IPR025417 YrzO-like protein CLD04_13650 IPR000620 EamA domain CLD04_13655 IPR005119 LysR, substrate-binding CLD04_13655 IPR000847 Transcription regulator HTH, LysR CLD04_13655 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_13655 IPR036390 Winged helix DNA-binding domain superfamily CLD04_13660 IPR000960 Flavin monooxygenase FMO CLD04_13660 IPR036188 FAD/NAD(P)-binding domain superfamily CLD04_13665 IPR027470 Cation efflux protein, cytoplasmic domain CLD04_13665 IPR002524 Cation efflux protein CLD04_13665 IPR036837 Cation efflux protein, cytoplasmic domain superfamily CLD04_13665 IPR027469 Cation efflux transmembrane domain superfamily CLD04_13670 IPR037479 Tautomerase, MSAD family CLD04_13670 IPR014347 Tautomerase/MIF superfamily CLD04_13675 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_13675 IPR000847 Transcription regulator HTH, LysR CLD04_13675 IPR005119 LysR, substrate-binding CLD04_13675 IPR036390 Winged helix DNA-binding domain superfamily CLD04_13690 IPR008407 Branched-chain amino acid transport, AzlD CLD04_13695 IPR004471 Branched-chain amino acid transport, AzlC CLD04_13695 IPR011606 Branched-chain amino acid transport, permease CLD04_13700 IPR000485 AsnC-type HTH domain CLD04_13700 IPR019885 Transcription regulator HTH, AsnC-type, conserved site CLD04_13700 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_13700 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CLD04_13700 IPR019888 Transcription regulator AsnC-type CLD04_13700 IPR011008 Dimeric alpha-beta barrel CLD04_13700 IPR011991 ArsR-like helix-turn-helix domain CLD04_13700 IPR036390 Winged helix DNA-binding domain superfamily CLD04_13705 IPR000468 Barstar (barnase inhibitor) CLD04_13705 IPR035905 Barstar-like superfamily CLD04_13710 IPR036396 Cytochrome P450 superfamily CLD04_13710 IPR017972 Cytochrome P450, conserved site CLD04_13710 IPR002397 Cytochrome P450, B-class CLD04_13710 IPR001128 Cytochrome P450 CLD04_13720 IPR036380 Isochorismatase-like superfamily CLD04_13720 IPR000868 Isochorismatase-like CLD04_13725 IPR021214 Protein of unknown function DUF2568 CLD04_13735 IPR034660 DinB/YfiT-like putative metalloenzymes CLD04_13735 IPR007837 DNA damage-inducible protein DinB CLD04_13740 IPR007530 Aminoglycoside 6-adenylyltransferase CLD04_13745 IPR013785 Aldolase-type TIM barrel CLD04_13745 IPR004136 Nitronate monooxygenase CLD04_13760 IPR004391 Glutamate racemase CLD04_13760 IPR015942 Asp/Glu/hydantoin racemase CLD04_13760 IPR001920 Asp/Glu racemase CLD04_13760 IPR018187 Asp/Glu racemase, active site 1 CLD04_13765 IPR029143 Protein of unknown function, YrpD CLD04_13765 IPR038682 YrpD-like superfamily CLD04_13770 IPR010070 Sporulation protein YjcZ-like CLD04_13775 IPR015304 ZinT domain CLD04_13775 IPR012674 Calycin CLD04_13780 IPR007627 RNA polymerase sigma-70 region 2 CLD04_13780 IPR014304 RNA polymerase sigma-Z type CLD04_13780 IPR014284 RNA polymerase sigma-70 like domain CLD04_13780 IPR039425 RNA polymerase sigma-70 like CLD04_13780 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_13780 IPR013324 RNA polymerase sigma factor, region 3/4-like CLD04_13780 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 CLD04_13780 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site CLD04_13780 IPR013325 RNA polymerase sigma factor, region 2 CLD04_13785 IPR036812 NADP-dependent oxidoreductase domain superfamily CLD04_13785 IPR023210 NADP-dependent oxidoreductase domain CLD04_13790 IPR004680 Citrate transporter-like domain CLD04_13790 IPR014738 Citrate transporter CLD04_13795 IPR000847 Transcription regulator HTH, LysR CLD04_13795 IPR005119 LysR, substrate-binding CLD04_13795 IPR036390 Winged helix DNA-binding domain superfamily CLD04_13795 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_13800 IPR007400 PrpF protein CLD04_13810 IPR009057 Homeobox-like domain superfamily CLD04_13815 IPR029058 Alpha/Beta hydrolase fold CLD04_13815 IPR000073 Alpha/beta hydrolase fold-1 CLD04_13820 IPR003646 SH3-like domain, bacterial-type CLD04_13825 IPR003646 SH3-like domain, bacterial-type CLD04_13830 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CLD04_13830 IPR037523 Vicinal oxygen chelate (VOC) domain CLD04_13830 IPR018146 Glyoxalase I, conserved site CLD04_13830 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CLD04_13835 IPR012851 Spore coat protein CotF-like CLD04_13840 IPR012851 Spore coat protein CotF-like CLD04_13845 IPR027399 Alcohol dehydrogenase GroES-associated CLD04_13845 IPR013149 Alcohol dehydrogenase, C-terminal CLD04_13845 IPR013154 Alcohol dehydrogenase, N-terminal CLD04_13845 IPR036291 NAD(P)-binding domain superfamily CLD04_13845 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site CLD04_13845 IPR011032 GroES-like superfamily CLD04_13855 IPR012851 Spore coat protein CotF-like CLD04_13860 IPR000551 MerR-type HTH domain CLD04_13860 IPR009061 Putative DNA-binding domain superfamily CLD04_13865 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site CLD04_13865 IPR011032 GroES-like superfamily CLD04_13865 IPR013154 Alcohol dehydrogenase, N-terminal CLD04_13865 IPR020843 Polyketide synthase, enoylreductase domain CLD04_13865 IPR036291 NAD(P)-binding domain superfamily CLD04_13865 IPR013149 Alcohol dehydrogenase, C-terminal CLD04_13870 IPR029062 Class I glutamine amidotransferase-like CLD04_13870 IPR002818 DJ-1/PfpI CLD04_13870 IPR006286 Deglycase PfpI CLD04_13875 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily CLD04_13875 IPR013148 Glycosyl hydrolase family 32, N-terminal CLD04_13875 IPR013189 Glycosyl hydrolase family 32, C-terminal CLD04_13875 IPR018053 Glycoside hydrolase, family 32, active site CLD04_13875 IPR001362 Glycoside hydrolase, family 32 CLD04_13875 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily CLD04_13880 IPR004704 Phosphotransferase system, mannose/fructose/sorbose family IID component CLD04_13885 IPR004700 Phosphotransferase system, mannose/fructose/sorbose family, IIC subunit CLD04_13890 IPR018455 Phosphotransferase system, sorbose subfamily IIB component, subgroup CLD04_13890 IPR036667 Phosphotransferase system, sorbose subfamily IIB component superfamily CLD04_13890 IPR004720 Phosphotransferase system, sorbose subfamily IIB component CLD04_13895 IPR033887 PTS system mannose/sorbose specific IIA subunit CLD04_13895 IPR004701 Phosphotransferase system, mannose-type IIA component CLD04_13895 IPR013789 Phosphotransferase system, mannose family IIA component CLD04_13895 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily CLD04_13900 IPR033887 PTS system mannose/sorbose specific IIA subunit CLD04_13900 IPR001550 Transcription antiterminator, conserved site CLD04_13900 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CLD04_13900 IPR002078 RNA polymerase sigma factor 54 interaction domain CLD04_13900 IPR036662 Phosphotransferase system, mannose-type IIA component superfamily CLD04_13900 IPR004701 Phosphotransferase system, mannose-type IIA component CLD04_13900 IPR036634 PRD domain superfamily CLD04_13900 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_13900 IPR003593 AAA+ ATPase domain CLD04_13900 IPR036390 Winged helix DNA-binding domain superfamily CLD04_13900 IPR011608 PRD domain CLD04_13905 IPR004840 Amino acid permease, conserved site CLD04_13905 IPR004841 Amino acid permease/ SLC12A domain CLD04_13910 IPR001123 Amino acid exporter protein, LeuE-type CLD04_13910 IPR004778 Homoserine/Threonine efflux protein CLD04_13915 IPR036390 Winged helix DNA-binding domain superfamily CLD04_13915 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_13915 IPR021586 Transcription regulator TrmB, C-terminal CLD04_13915 IPR002831 Transcription regulator TrmB, N-terminal CLD04_13920 IPR007627 RNA polymerase sigma-70 region 2 CLD04_13920 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 CLD04_13920 IPR013325 RNA polymerase sigma factor, region 2 CLD04_13920 IPR013324 RNA polymerase sigma factor, region 3/4-like CLD04_13920 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_13920 IPR014284 RNA polymerase sigma-70 like domain CLD04_13920 IPR039425 RNA polymerase sigma-70 like CLD04_13920 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site CLD04_13925 IPR021729 Domain of unknown function DUF3298 CLD04_13925 IPR025303 Deacetylase PdaC CLD04_13925 IPR037126 PdaC/RsiV-like superfamily CLD04_13930 IPR002656 Acyltransferase 3 CLD04_13930 IPR036514 SGNH hydrolase superfamily CLD04_13935 IPR025424 YrhK domain CLD04_13940 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding CLD04_13940 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily CLD04_13940 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CLD04_13940 IPR017938 Riboflavin synthase-like beta-barrel CLD04_13940 IPR023206 Bifunctional cytochrome P450/NADPH--cytochrome P450 reductase CLD04_13940 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase CLD04_13940 IPR008254 Flavodoxin/nitric oxide synthase CLD04_13940 IPR001094 Flavodoxin-like CLD04_13940 IPR017927 FAD-binding domain, ferredoxin reductase-type CLD04_13940 IPR036396 Cytochrome P450 superfamily CLD04_13940 IPR017972 Cytochrome P450, conserved site CLD04_13940 IPR001128 Cytochrome P450 CLD04_13940 IPR001433 Oxidoreductase FAD/NAD(P)-binding CLD04_13940 IPR029039 Flavoprotein-like superfamily CLD04_13945 IPR032551 HTH-type transcriptional repressor, C-terminal CLD04_13945 IPR023772 DNA-binding HTH domain, TetR-type, conserved site CLD04_13945 IPR009057 Homeobox-like domain superfamily CLD04_13945 IPR001647 DNA-binding HTH domain, TetR-type CLD04_13950 IPR013216 Methyltransferase type 11 CLD04_13950 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_13955 IPR012655 Uncharacterised protein YrzI CLD04_13960 IPR000292 Formate/nitrite transporter CLD04_13960 IPR023271 Aquaporin-like CLD04_13960 IPR024002 Formate/nitrite transporter, conserved site CLD04_13965 IPR018745 Domain of unknown function DUF2294 CLD04_13970 IPR006478 Formate dehydrogenase, alpha subunit CLD04_13970 IPR006657 Molybdopterin dinucleotide-binding domain CLD04_13970 IPR041924 Formate dehydrogenase H, N-terminal CLD04_13970 IPR006656 Molybdopterin oxidoreductase CLD04_13970 IPR036010 2Fe-2S ferredoxin-like superfamily CLD04_13970 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLD04_13970 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain CLD04_13970 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLD04_13970 IPR019574 NADH:ubiquinone oxidoreductase, subunit G, iron-sulphur binding CLD04_13970 IPR009010 Aspartate decarboxylase-like domain superfamily CLD04_13970 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain CLD04_13975 IPR012440 Protein of unknown function DUF1641 CLD04_13980 IPR025418 YrhC-like protein CLD04_13985 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme CLD04_13985 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_13985 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_13985 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_13990 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site CLD04_13990 IPR001926 Pyridoxal-phosphate dependent enzyme CLD04_13990 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CLD04_13995 IPR010049 MTA/SAH nucleosidase CLD04_13995 IPR000845 Nucleoside phosphorylase domain CLD04_13995 IPR035994 Nucleoside phosphorylase superfamily CLD04_14000 IPR001737 Ribosomal RNA adenine methyltransferase KsgA/Erm CLD04_14000 IPR041698 Methyltransferase domain 25 CLD04_14000 IPR020598 Ribosomal RNA adenine methylase transferase, N-terminal CLD04_14000 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_14000 IPR023553 Uncharacterised methyltransferase, YrrT CLD04_14005 IPR019686 Protein of unknown function DUF2536 CLD04_14010 IPR009988 Domain of unknown function DUF1510 CLD04_14015 IPR036138 Penicillin-binding protein, dimerisation domain superfamily CLD04_14015 IPR012338 Beta-lactamase/transpeptidase-like CLD04_14015 IPR005311 Penicillin-binding protein, dimerisation domain CLD04_14015 IPR001460 Penicillin-binding protein, transpeptidase CLD04_14020 IPR036805 Transcription elongation factor, GreA/GreB, N-terminal domain superfamily CLD04_14020 IPR018151 Transcription elongation factor, GreA/GreB, conserved site CLD04_14020 IPR023459 Transcription elongation factor GreA/GreB family CLD04_14020 IPR001437 Transcription elongation factor, GreA/GreB, C-terminal CLD04_14020 IPR006359 Transcription elongation factor GreA CLD04_14020 IPR036953 Transcription elongation factor GreA/GreB, C-terminal domain superfamily CLD04_14020 IPR028624 Transcription elongation factor GreA/GreB CLD04_14020 IPR022691 Transcription elongation factor, GreA/GreB, N-terminal CLD04_14025 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_14025 IPR006083 Phosphoribulokinase/uridine kinase CLD04_14025 IPR026008 Uridine kinase CLD04_14025 IPR000764 Uridine kinase-like CLD04_14045 IPR003770 Endolytic murein transglycosylase CLD04_14050 IPR009711 Uncharacterised protein family UPF0473 CLD04_14055 IPR012337 Ribonuclease H-like superfamily CLD04_14055 IPR006641 YqgF/RNase H-like domain CLD04_14055 IPR037027 YqgF/RNase H-like domain superfamily CLD04_14055 IPR005227 Putative pre-16S rRNA nuclease CLD04_14060 IPR009309 IreB regulatory phosphoprotein CLD04_14065 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily CLD04_14065 IPR009000 Translation protein, beta-barrel domain superfamily CLD04_14065 IPR012947 Threonyl/alanyl tRNA synthetase, SAD CLD04_14065 IPR002318 Alanine-tRNA ligase, class IIc CLD04_14065 IPR018162 Alanine-tRNA ligase, class IIc, anti-codon-binding domain superfamily CLD04_14065 IPR018165 Alanyl-tRNA synthetase, class IIc, core domain CLD04_14065 IPR003156 DHHA1 domain CLD04_14065 IPR023033 Alanine-tRNA ligase, eukaryota/bacteria CLD04_14065 IPR018164 Alanyl-tRNA synthetase, class IIc, N-terminal CLD04_14070 IPR002549 Transmembrane protein TqsA-like CLD04_14075 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_14075 IPR017871 ABC transporter, conserved site CLD04_14075 IPR003593 AAA+ ATPase domain CLD04_14075 IPR003439 ABC transporter-like CLD04_14075 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type CLD04_14080 IPR001320 Ionotropic glutamate receptor CLD04_14080 IPR018313 Solute-binding protein family 3, conserved site CLD04_14080 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CLD04_14085 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_14085 IPR035906 MetI-like superfamily CLD04_14085 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain CLD04_14090 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_14090 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain CLD04_14090 IPR035906 MetI-like superfamily CLD04_14095 IPR025029 Protein of unknown function DUF3918 CLD04_14105 IPR011033 PRC-barrel-like superfamily CLD04_14105 IPR027275 PRC-barrel domain CLD04_14110 IPR027785 UvrD-like helicase C-terminal domain CLD04_14110 IPR041451 RecD-like DNA helicase, SH3 domain CLD04_14110 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_14110 IPR029493 RecD helicase-like helix-hairpin-helix domain CLD04_14110 IPR003593 AAA+ ATPase domain CLD04_14110 IPR006345 RecD-like DNA helicase CLD04_14115 IPR013105 Tetratricopeptide repeat 2 CLD04_14115 IPR011990 Tetratricopeptide-like helical domain superfamily CLD04_14115 IPR013026 Tetratricopeptide repeat-containing domain CLD04_14115 IPR019734 Tetratricopeptide repeat CLD04_14120 IPR023382 Adenine nucleotide alpha hydrolase-like domains CLD04_14120 IPR004506 tRNA-specific 2-thiouridylase CLD04_14120 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLD04_14125 IPR016454 Cysteine desulfurase CLD04_14125 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site CLD04_14125 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_14125 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_14125 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_14125 IPR000192 Aminotransferase class V domain CLD04_14130 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_14130 IPR036390 Winged helix DNA-binding domain superfamily CLD04_14130 IPR030489 Transcription regulator Rrf2-type, conserved site CLD04_14130 IPR000944 Transcription regulator Rrf2-type CLD04_14135 IPR021886 MgsA AAA+ ATPase C-terminal CLD04_14135 IPR008921 DNA polymerase III, clamp loader complex, gamma/delta/delta subunit, C-terminal CLD04_14135 IPR032423 AAA C-terminal domain CLD04_14135 IPR003593 AAA+ ATPase domain CLD04_14135 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_14135 IPR008824 RuvB-like P-loop domain CLD04_14140 IPR035985 Ubiquitin-activating enzyme CLD04_14140 IPR000594 THIF-type NAD/FAD binding fold CLD04_14150 IPR004364 Aminoacyl-tRNA synthetase, class II (D/K/N) CLD04_14150 IPR004524 Aspartate-tRNA ligase, type 1 CLD04_14150 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type CLD04_14150 IPR029351 GAD domain CLD04_14150 IPR006195 Aminoacyl-tRNA synthetase, class II CLD04_14150 IPR012340 Nucleic acid-binding, OB-fold CLD04_14150 IPR002312 Aspartyl/Asparaginyl-tRNA synthetase, class IIb CLD04_14150 IPR004115 GAD-like domain superfamily CLD04_14155 IPR033656 Histidyl-anticodon-binding CLD04_14155 IPR004154 Anticodon-binding CLD04_14155 IPR006195 Aminoacyl-tRNA synthetase, class II CLD04_14155 IPR015807 Histidine-tRNA ligase CLD04_14155 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit CLD04_14155 IPR036621 Anticodon-binding domain superfamily CLD04_14155 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain CLD04_14160 IPR035378 Uncharacterized protein YrzK-like CLD04_14165 IPR017293 N-acetylmuramoyl-L-alanine amidase, YrvJ, predicted CLD04_14165 IPR003646 SH3-like domain, bacterial-type CLD04_14165 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain CLD04_14170 IPR023509 D-aminoacyl-tRNA deacylase-like superfamily CLD04_14170 IPR003732 D-aminoacyl-tRNA deacylase DTD CLD04_14175 IPR012675 Beta-grasp domain superfamily CLD04_14175 IPR003607 HD/PDEase domain CLD04_14175 IPR004095 TGS CLD04_14175 IPR033655 RelA, TGS domain CLD04_14175 IPR002912 ACT domain CLD04_14175 IPR007685 RelA/SpoT CLD04_14175 IPR004811 RelA/SpoT family CLD04_14175 IPR012676 TGS-like CLD04_14180 IPR000836 Phosphoribosyltransferase domain CLD04_14180 IPR005764 Adenine phosphoribosyl transferase CLD04_14180 IPR029057 Phosphoribosyltransferase-like CLD04_14185 IPR001667 DDH domain CLD04_14185 IPR038763 DHH phosphoesterase superfamily CLD04_14185 IPR003156 DHHA1 domain CLD04_14185 IPR004610 Bacterial RecJ exonuclease CLD04_14185 IPR018779 Single-stranded-DNA-specific exonuclease RecJ, C-terminal CLD04_14185 IPR041122 RecJ, OB domain CLD04_14190 IPR010445 Lipopolysaccharide assembly protein A domain CLD04_14195 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily CLD04_14195 IPR026278 Potassium/proton antiporter subunit KhtT CLD04_14195 IPR006037 Regulator of K+ conductance, C-terminal CLD04_14200 IPR022645 Protein-export membrane protein SecD/SecF, bacterial CLD04_14200 IPR005665 Protein-export membrane protein SecF, bacterial CLD04_14200 IPR005791 Protein translocase subunit SecD CLD04_14200 IPR022646 Protein-export membrane protein SecD/SecF/SecDF, conserved site CLD04_14200 IPR022813 Protein-export membrane protein SecD/SecF, archaeal and bacterial CLD04_14205 IPR025716 Post-transcriptional regulator CLD04_14210 IPR002797 Polysaccharide biosynthesis protein CLD04_14210 IPR014249 Sporulation stage V protein B CLD04_14210 IPR024923 Peptidoglycan biosynthesis protein, SpoVB-type CLD04_14210 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain CLD04_14215 IPR007353 Protein of unknown function DUF421 CLD04_14215 IPR023090 UPF0702, alpha/beta domain superfamily CLD04_14220 IPR023804 Protein of unknown function DUF3792, transmembrane CLD04_14230 IPR003849 Preprotein translocase YajC CLD04_14235 IPR002616 tRNA-guanine(15) transglycosylase-like CLD04_14235 IPR036511 Queuine tRNA-ribosyltransferase-like CLD04_14235 IPR004803 tRNA-guanine transglycosylase CLD04_14240 IPR042118 QueA, domain 1 CLD04_14240 IPR036100 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA superfamily CLD04_14240 IPR003699 S-adenosylmethionine:tRNA ribosyltransferase-isomerase, QueA CLD04_14240 IPR042119 QueA, domain 2 CLD04_14245 IPR021320 Protein of unknown function DUF2905 CLD04_14250 IPR036390 Winged helix DNA-binding domain superfamily CLD04_14250 IPR003593 AAA+ ATPase domain CLD04_14250 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_14250 IPR008823 RuvB C-terminal winged helix domain CLD04_14250 IPR008824 RuvB-like P-loop domain CLD04_14250 IPR004605 DNA helicase, Holliday junction RuvB-type CLD04_14250 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_14250 IPR041445 RuvB, AAA lid domain CLD04_14255 IPR000085 Bacterial DNA recombination protein RuvA CLD04_14255 IPR010994 RuvA domain 2-like CLD04_14255 IPR011114 Holliday junction DNA helicase RuvA, C-terminal CLD04_14255 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 CLD04_14255 IPR013849 DNA helicase, Holliday junction RuvA type, domain I, bacterial CLD04_14255 IPR012340 Nucleic acid-binding, OB-fold CLD04_14255 IPR036267 RuvA, C-terminal domain superfamily CLD04_14260 IPR038117 Bypass of forespore C, C-terminal domain superfamily CLD04_14260 IPR038118 Bypass-of-forespore C, N-terminal domain superfamily CLD04_14260 IPR015050 Bypass of forespore C, C-terminal CLD04_14260 IPR015071 Bypass-of-forespore C, N-terminal CLD04_14265 IPR020846 Major facilitator superfamily domain CLD04_14265 IPR004748 Polyol permease CLD04_14265 IPR036259 MFS transporter superfamily CLD04_14265 IPR011701 Major facilitator superfamily CLD04_14270 IPR036291 NAD(P)-binding domain superfamily CLD04_14270 IPR000683 Oxidoreductase, N-terminal CLD04_14270 IPR004104 Oxidoreductase, C-terminal CLD04_14270 IPR030827 Inositol 2-dehydrogenase CLD04_14290 IPR001463 Sodium:alanine symporter CLD04_14295 IPR026564 Transcriptional regulator TACO1-like, domain 3 CLD04_14295 IPR029072 YebC-like CLD04_14295 IPR002876 Transcriptional regulator TACO1-like CLD04_14295 IPR017856 Integrase-like, N-terminal CLD04_14300 IPR019076 Sporulation lipoprotein YhcN/YlaJ-like CLD04_14305 IPR014248 Spore coat assembly protein SafA CLD04_14305 IPR036779 LysM domain superfamily CLD04_14305 IPR018392 LysM domain CLD04_14310 IPR036094 Quinolinate synthetase A superfamily CLD04_14310 IPR003473 Quinolinate synthetase A CLD04_14310 IPR023515 Quinolinate synthase A, type 3 CLD04_14315 IPR013785 Aldolase-type TIM barrel CLD04_14315 IPR037128 Quinolinate phosphoribosyl transferase, N-terminal domain superfamily CLD04_14315 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal CLD04_14315 IPR027277 Nicotinate-nucleotide pyrophosphorylase/Putative pyrophosphorylase ModD CLD04_14315 IPR004393 Nicotinate-nucleotide pyrophosphorylase CLD04_14315 IPR022412 Quinolinate phosphoribosyl transferase, N-terminal CLD04_14315 IPR002638 Quinolinate phosphoribosyl transferase, C-terminal CLD04_14320 IPR036188 FAD/NAD(P)-binding domain superfamily CLD04_14320 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain CLD04_14320 IPR005288 L-aspartate oxidase CLD04_14320 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily CLD04_14320 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily CLD04_14320 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal CLD04_14325 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_14325 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_14325 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_14325 IPR016454 Cysteine desulfurase CLD04_14325 IPR000192 Aminotransferase class V domain CLD04_14325 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site CLD04_14330 IPR036390 Winged helix DNA-binding domain superfamily CLD04_14330 IPR026043 Transcription repressor NadR CLD04_14330 IPR013196 Helix-turn-helix, type 11 CLD04_14330 IPR004173 3H domain CLD04_14330 IPR035922 3H domain superfamily CLD04_14330 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_14335 IPR008242 Bifunctional P-protein, chorismate mutase/prephenate dehydratase CLD04_14335 IPR001086 Prephenate dehydratase CLD04_14335 IPR002912 ACT domain CLD04_14335 IPR018528 Prephenate dehydratase, conserved site CLD04_14340 IPR008310 UPF0735 ACT domain-containing protein CLD04_14340 IPR002912 ACT domain CLD04_14345 IPR006169 GTP1/OBG domain CLD04_14345 IPR006074 GTP1/OBG, conserved site CLD04_14345 IPR036346 GTP-binding protein OBG, C-terminal domain superfamily CLD04_14345 IPR014100 GTP-binding protein Obg/CgtA CLD04_14345 IPR035101 GTP-binding protein, Obg-type CLD04_14345 IPR036726 GTP1/OBG domain superfamily CLD04_14345 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_14345 IPR015349 GTP-binding protein OBG, C-terminal CLD04_14345 IPR005225 Small GTP-binding protein domain CLD04_14345 IPR006073 GTP binding domain CLD04_14345 IPR031167 OBG-type guanine nucleotide-binding (G) domain CLD04_14350 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB CLD04_14350 IPR037100 Sporulation initiation phosphotransferase B, C-terminal domain superfamily CLD04_14350 IPR016122 Sporulation initiation phosphotransferase B, C-terminal CLD04_14350 IPR039506 SpoOB, alpha-helical domain CLD04_14355 IPR001684 Ribosomal protein L27 CLD04_14355 IPR018261 Ribosomal protein L27, conserved site CLD04_14360 IPR036764 Cysteine protease Prp superfamily CLD04_14360 IPR007422 Cysteine protease Prp CLD04_14365 IPR001787 Ribosomal protein L21 CLD04_14365 IPR018258 Ribosomal protein L21, conserved site CLD04_14365 IPR036164 L21-like superfamily CLD04_14365 IPR028909 Ribosomal protein L21-like CLD04_14370 IPR008915 Peptidase M50 CLD04_14375 IPR011055 Duplicated hybrid motif CLD04_14375 IPR016047 Peptidase M23 CLD04_14380 IPR010223 ATP binding protein MinD, bacterial-type CLD04_14380 IPR002586 CobQ/CobB/MinD/ParA nucleotide binding domain CLD04_14380 IPR025501 ATP binding protein MinD CLD04_14380 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_14385 IPR016098 Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal CLD04_14385 IPR013033 Septum formation inhibitor MinC CLD04_14385 IPR036145 Septum formation inhibitor MinC, C-terminal domain superfamily CLD04_14385 IPR005526 Septum formation inhibitor MinC, C-terminal CLD04_14390 IPR007227 Cell shape-determining protein MreD CLD04_14395 IPR042175 Cell/Rod shape-determining protein MreC, domain 2 CLD04_14395 IPR042177 Cell/Rod shape-determining protein MreC, domain 1 CLD04_14395 IPR007221 Rod shape-determining protein MreC CLD04_14400 IPR004753 Cell shape determining protein MreB CLD04_14405 IPR025657 RadC-like JAB domain CLD04_14405 IPR001405 Uncharacterised protein family UPF0758 CLD04_14405 IPR010994 RuvA domain 2-like CLD04_14405 IPR020891 Uncharacterised protein family UPF0758, conserved site CLD04_14405 IPR000445 Helix-hairpin-helix motif CLD04_14405 IPR037518 MPN domain CLD04_14410 IPR029001 Inosine triphosphate pyrophosphatase-like CLD04_14410 IPR003697 Nucleoside triphosphate pyrophosphatase Maf-like protein CLD04_14415 IPR007730 Sporulation-like domain CLD04_14415 IPR036680 Sporulation-like domain superfamily CLD04_14420 IPR000045 Prepilin type IV endopeptidase, peptidase domain CLD04_14420 IPR010627 Peptidase A24A, N-terminal CLD04_14425 IPR018109 Folylpolyglutamate synthetase, conserved site CLD04_14425 IPR001645 Folylpolyglutamate synthetase CLD04_14425 IPR013221 Mur ligase, central CLD04_14425 IPR036615 Mur ligase, C-terminal domain superfamily CLD04_14425 IPR036565 Mur-like, catalytic domain superfamily CLD04_14425 IPR004101 Mur ligase, C-terminal CLD04_14430 IPR033705 Valyl tRNA synthetase, anticodon-binding domain CLD04_14430 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLD04_14430 IPR002303 Valine-tRNA ligase CLD04_14430 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding CLD04_14430 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain CLD04_14430 IPR019499 Valyl-tRNA synthetase, tRNA-binding arm CLD04_14430 IPR037118 Valyl-tRNA synthetase, tRNA-binding arm superfamily CLD04_14430 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding CLD04_14430 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CLD04_14430 IPR002300 Aminoacyl-tRNA synthetase, class Ia CLD04_14430 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm CLD04_14440 IPR014253 Spore coat protein YsxE CLD04_14440 IPR011009 Protein kinase-like domain superfamily CLD04_14445 IPR018392 LysM domain CLD04_14445 IPR036779 LysM domain superfamily CLD04_14450 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_14450 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_14450 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_14450 IPR004639 Tetrapyrrole biosynthesis, glutamate-1-semialdehyde aminotransferase CLD04_14450 IPR005814 Aminotransferase class-III CLD04_14455 IPR013785 Aldolase-type TIM barrel CLD04_14455 IPR030656 Delta-aminolevulinic acid dehydratase, active site CLD04_14455 IPR001731 Delta-aminolevulinic acid dehydratase CLD04_14460 IPR036108 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase superfamily CLD04_14460 IPR003754 Tetrapyrrole biosynthesis, uroporphyrinogen III synthase CLD04_14460 IPR039793 Uroporphyrinogen-III synthase CLD04_14465 IPR022419 Porphobilinogen deaminase, dipyrromethane cofactor binding site CLD04_14465 IPR036803 Porphobilinogen deaminase, C-terminal domain superfamily CLD04_14465 IPR022418 Porphobilinogen deaminase, C-terminal CLD04_14465 IPR022417 Porphobilinogen deaminase, N-terminal CLD04_14465 IPR000860 Porphobilinogen deaminase CLD04_14470 IPR002541 Cytochrome c assembly protein CLD04_14475 IPR006151 Quinate/shikimate 5-dehydrogenase/glutamyl-tRNA reductase CLD04_14475 IPR036453 Glutamyl tRNA-reductase dimerization domain superfamily CLD04_14475 IPR018214 Glutamyl-tRNA reductase, conserved site CLD04_14475 IPR036343 Glutamyl-tRNA reductase, N-terminal domain superfamily CLD04_14475 IPR000343 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase CLD04_14475 IPR015896 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, dimerisation domain CLD04_14475 IPR015895 Tetrapyrrole biosynthesis, glutamyl-tRNA reductase, N-terminal CLD04_14475 IPR036291 NAD(P)-binding domain superfamily CLD04_14485 IPR005225 Small GTP-binding protein domain CLD04_14485 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_14485 IPR006073 GTP binding domain CLD04_14485 IPR019987 GTP-binding protein, ribosome biogenesis, YsxC CLD04_14485 IPR030393 EngB-type guanine nucleotide-binding (G) domain CLD04_14490 IPR015947 PUA-like superfamily CLD04_14490 IPR003959 ATPase, AAA-type, core CLD04_14490 IPR004815 Lon protease, bacterial/eukaryotic-type CLD04_14490 IPR003593 AAA+ ATPase domain CLD04_14490 IPR008269 Peptidase S16, Lon proteolytic domain CLD04_14490 IPR003111 Lon, substrate-binding domain CLD04_14490 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_14490 IPR027065 Lon protease CLD04_14490 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLD04_14490 IPR020568 Ribosomal protein S5 domain 2-type fold CLD04_14490 IPR027543 Lon protease, bacterial CLD04_14490 IPR008268 Peptidase S16, active site CLD04_14495 IPR027065 Lon protease CLD04_14495 IPR008268 Peptidase S16, active site CLD04_14495 IPR003593 AAA+ ATPase domain CLD04_14495 IPR003959 ATPase, AAA-type, core CLD04_14495 IPR014251 Sporulation protease LonB CLD04_14495 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLD04_14495 IPR020568 Ribosomal protein S5 domain 2-type fold CLD04_14495 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_14495 IPR008269 Peptidase S16, Lon proteolytic domain CLD04_14500 IPR038366 Zinc finger, ClpX C4-type superfamily CLD04_14500 IPR010603 Zinc finger, ClpX C4-type CLD04_14500 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_14500 IPR003593 AAA+ ATPase domain CLD04_14500 IPR004487 Clp protease, ATP-binding subunit ClpX CLD04_14500 IPR019489 Clp ATPase, C-terminal CLD04_14500 IPR003959 ATPase, AAA-type, core CLD04_14505 IPR001179 FKBP-type peptidyl-prolyl cis-trans isomerase domain CLD04_14505 IPR008881 Trigger factor, ribosome-binding, bacterial CLD04_14505 IPR005215 Trigger factor CLD04_14505 IPR008880 Trigger factor, C-terminal CLD04_14505 IPR037041 Trigger factor, C-terminal domain superfamily CLD04_14505 IPR036611 Trigger factor ribosome-binding domain superfamily CLD04_14505 IPR027304 Trigger factor/SurA domain superfamily CLD04_14510 IPR013026 Tetratricopeptide repeat-containing domain CLD04_14510 IPR011990 Tetratricopeptide-like helical domain superfamily CLD04_14510 IPR019734 Tetratricopeptide repeat CLD04_14515 IPR015928 Aconitase/3-isopropylmalate dehydratase, swivel CLD04_14515 IPR000573 Aconitase A/isopropylmalate dehydratase small subunit, swivel domain CLD04_14515 IPR004431 3-isopropylmalate dehydratase, small subunit CLD04_14515 IPR033940 3-isopropylmalate dehydratase, swivel domain CLD04_14520 IPR036008 Aconitase, iron-sulfur domain CLD04_14520 IPR018136 Aconitase family, 4Fe-4S cluster binding site CLD04_14520 IPR001030 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha domain CLD04_14520 IPR015931 Aconitase/3-isopropylmalate dehydratase large subunit, alpha/beta/alpha, subdomain 1/3 CLD04_14520 IPR004430 3-isopropylmalate dehydratase, large subunit CLD04_14520 IPR033941 3-Isopropylmalate dehydratase, catalytic domain CLD04_14525 IPR004429 Isopropylmalate dehydrogenase CLD04_14525 IPR024084 Isopropylmalate dehydrogenase-like domain CLD04_14525 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site CLD04_14530 IPR013785 Aldolase-type TIM barrel CLD04_14530 IPR036230 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain superfamily CLD04_14530 IPR005671 2-isopropylmalate synthase, bacterial-type CLD04_14530 IPR002034 Alpha-isopropylmalate/homocitrate synthase, conserved site CLD04_14530 IPR013709 2-isopropylmalate synthase LeuA, allosteric (dimerisation) domain CLD04_14530 IPR000891 Pyruvate carboxyltransferase CLD04_14535 IPR013023 Ketol-acid reductoisomerase CLD04_14535 IPR000506 Ketol-acid reductoisomerase, C-terminal CLD04_14535 IPR013116 Ketol-acid reductoisomerase, N-terminal CLD04_14535 IPR014359 Ketol-acid reductoisomerase, prokaryotic CLD04_14535 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CLD04_14535 IPR036291 NAD(P)-binding domain superfamily CLD04_14540 IPR004789 Acetolactate synthase, small subunit CLD04_14540 IPR019455 Acetolactate synthase, small subunit, C-terminal CLD04_14540 IPR002912 ACT domain CLD04_14540 IPR039557 AHAS, ACT domain CLD04_14540 IPR027271 Acetolactate synthase/Transcription factor NikR, C-terminal CLD04_14545 IPR039368 Acetolactate synthase large subunit, TPP binding domain CLD04_14545 IPR029061 Thiamin diphosphate-binding fold CLD04_14545 IPR012000 Thiamine pyrophosphate enzyme, central domain CLD04_14545 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain CLD04_14545 IPR029035 DHS-like NAD/FAD-binding domain superfamily CLD04_14545 IPR012846 Acetolactate synthase, large subunit, biosynthetic CLD04_14545 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding CLD04_14560 IPR016181 Acyl-CoA N-acyltransferase CLD04_14560 IPR000182 GNAT domain CLD04_14565 IPR025889 General stress protein 17M-like domain CLD04_14565 IPR019060 Domain of unknown function DUF2382 CLD04_14575 IPR041802 YfcE-like, metallophosphatase domain CLD04_14575 IPR020935 Phosphodiesterase YfcE, conserved site CLD04_14575 IPR029052 Metallo-dependent phosphatase-like CLD04_14575 IPR024654 Calcineurin-like phosphoesterase domain, lpxH-type CLD04_14575 IPR000979 Phosphodiesterase MJ0936/Vps29 CLD04_14580 IPR002637 Ham1-like protein CLD04_14580 IPR029001 Inosine triphosphate pyrophosphatase-like CLD04_14580 IPR020922 dITP/XTP pyrophosphatase CLD04_14585 IPR002381 Ribonuclease PH, bacterial-type CLD04_14585 IPR001247 Exoribonuclease, phosphorolytic domain 1 CLD04_14585 IPR020568 Ribosomal protein S5 domain 2-type fold CLD04_14585 IPR027408 PNPase/RNase PH domain superfamily CLD04_14585 IPR015847 Exoribonuclease, phosphorolytic domain 2 CLD04_14585 IPR036345 Exoribonuclease, PH domain 2 superfamily CLD04_14585 IPR018336 Ribonuclease PH, conserved site CLD04_14590 IPR019606 GerMN domain CLD04_14595 IPR001920 Asp/Glu racemase CLD04_14595 IPR018187 Asp/Glu racemase, active site 1 CLD04_14595 IPR033134 Asp/Glu racemase, active site 2 CLD04_14595 IPR004391 Glutamate racemase CLD04_14595 IPR015942 Asp/Glu/hydantoin racemase CLD04_14600 IPR000835 MarR-type HTH domain CLD04_14600 IPR036390 Winged helix DNA-binding domain superfamily CLD04_14600 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_14605 IPR000792 Transcription regulator LuxR, C-terminal CLD04_14605 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_14605 IPR016032 Signal transduction response regulator, C-terminal effector CLD04_14610 IPR006683 Thioesterase domain CLD04_14610 IPR029069 HotDog domain superfamily CLD04_14620 IPR009051 Alpha-helical ferredoxin CLD04_14620 IPR025192 Succinate dehydogenase/fumarate reductase N-terminal CLD04_14620 IPR004489 Succinate dehydrogenase/fumarate reductase iron-sulphur protein CLD04_14620 IPR012675 Beta-grasp domain superfamily CLD04_14620 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLD04_14620 IPR036010 2Fe-2S ferredoxin-like superfamily CLD04_14620 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLD04_14625 IPR011280 Succinate dehydrogenase/fumarate reductase flavoprotein subunit, low-GC Gram-positive bacteria CLD04_14625 IPR027477 Succinate dehydrogenase/fumarate reductase flavoprotein, catalytic domain superfamily CLD04_14625 IPR015939 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal CLD04_14625 IPR037099 Fumarate reductase/succinate dehydrogenase flavoprotein-like, C-terminal domain superfamily CLD04_14625 IPR003952 Fumarate reductase/succinate dehydrogenase, FAD-binding site CLD04_14625 IPR036188 FAD/NAD(P)-binding domain superfamily CLD04_14625 IPR003953 FAD-dependent oxidoreductase 2, FAD binding domain CLD04_14630 IPR011138 Succinate dehydrogenase cytochrome b558 subunit CLD04_14630 IPR000701 Succinate dehydrogenase/fumarate reductase type B, transmembrane subunit CLD04_14630 IPR016002 Succinate dehydrogenase cytochrome b558 subunit, Firmicute CLD04_14630 IPR034804 Fumarate reductase/succinate dehydrogenase, transmembrane subunit CLD04_14635 IPR019642 Protein of unknown function DUF2507 CLD04_14635 IPR024096 NO signalling/Golgi transport ligand-binding domain superfamily CLD04_14640 IPR002912 ACT domain CLD04_14640 IPR041740 Aspartokinase catalytic domain CLD04_14640 IPR036393 Acetylglutamate kinase-like superfamily CLD04_14640 IPR001048 Aspartate/glutamate/uridylate kinase CLD04_14640 IPR005260 Aspartate kinase, monofunctional class CLD04_14640 IPR001341 Aspartate kinase CLD04_14640 IPR018042 Aspartate kinase, conserved site CLD04_14640 IPR027795 CASTOR, ACT domain CLD04_14650 IPR038476 UvrC homology region 2 superfamily CLD04_14650 IPR001162 UvrC family homology region CLD04_14650 IPR000305 GIY-YIG endonuclease CLD04_14650 IPR035901 GIY-YIG endonuclease superfamily CLD04_14650 IPR010994 RuvA domain 2-like CLD04_14650 IPR001943 UVR domain CLD04_14650 IPR036876 UVR domain superfamily CLD04_14650 IPR004791 UvrABC system, subunit C CLD04_14655 IPR017937 Thioredoxin, conserved site CLD04_14655 IPR013766 Thioredoxin domain CLD04_14655 IPR005746 Thioredoxin CLD04_14655 IPR036249 Thioredoxin-like superfamily CLD04_14660 IPR017853 Glycoside hydrolase superfamily CLD04_14660 IPR013780 Glycosyl hydrolase, all-beta CLD04_14660 IPR010720 Alpha-L-arabinofuranosidase, C-terminal CLD04_14665 IPR018206 Electron transfer flavoprotein subunit alpha, conserved site CLD04_14665 IPR029035 DHS-like NAD/FAD-binding domain superfamily CLD04_14665 IPR001308 Electron transfer flavoprotein alpha subunit/FixB CLD04_14665 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal CLD04_14665 IPR014731 Electron transfer flavoprotein, alpha subunit, C-terminal CLD04_14665 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLD04_14665 IPR033947 Electron transfer flavoprotein, alpha subunit, N-terminal CLD04_14670 IPR033948 Electron transfer flavoprotein, beta subunit, N-terminal CLD04_14670 IPR014730 Electron transfer flavoprotein, alpha/beta-subunit, N-terminal CLD04_14670 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLD04_14670 IPR000049 Electron transfer flavoprotein, beta-subunit, conserved site CLD04_14670 IPR012255 Electron transfer flavoprotein, beta subunit CLD04_14675 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site CLD04_14675 IPR029045 ClpP/crotonase-like domain superfamily CLD04_14675 IPR001753 Enoyl-CoA hydratase/isomerase CLD04_14680 IPR013570 Transcription regulator YsiA, C-terminal CLD04_14680 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CLD04_14680 IPR001647 DNA-binding HTH domain, TetR-type CLD04_14680 IPR009057 Homeobox-like domain superfamily CLD04_14685 IPR025110 AMP-binding enzyme, C-terminal domain CLD04_14685 IPR020845 AMP-binding, conserved site CLD04_14685 IPR000873 AMP-dependent synthetase/ligase CLD04_14685 IPR042099 AMP-dependent synthetase-like superfamily CLD04_14690 IPR007140 Protein of unknown function DUF350 CLD04_14695 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_14695 IPR000432 DNA mismatch repair protein MutS, C-terminal CLD04_14695 IPR007696 DNA mismatch repair protein MutS, core CLD04_14695 IPR005747 Endonuclease MutS2 CLD04_14695 IPR002625 Smr domain CLD04_14695 IPR036063 Smr domain superfamily CLD04_14695 IPR036187 DNA mismatch repair protein MutS, core domain superfamily CLD04_14700 IPR022311 Uncharacterised conserved protein UCP005047, YshC CLD04_14700 IPR029398 DNA polymerase beta, thumb domain CLD04_14700 IPR016195 Polymerase/histidinol phosphatase-like CLD04_14700 IPR010996 DNA polymerase beta-like, N-terminal domain CLD04_14700 IPR003141 Polymerase/histidinol phosphatase, N-terminal CLD04_14700 IPR004013 PHP domain CLD04_14700 IPR003583 Helix-hairpin-helix DNA-binding motif, class 1 CLD04_14700 IPR037160 DNA polymerase, thumb domain superfamily CLD04_14700 IPR027421 DNA polymerase lambda lyase domain superfamily CLD04_14700 IPR002054 DNA-directed DNA polymerase X CLD04_14705 IPR003825 Colicin V production, CvpA CLD04_14710 IPR007838 Cell division protein ZapA-like CLD04_14710 IPR036192 Cell division protein ZapA-like superfamily CLD04_14710 IPR023688 Cell division protein ZapA, firmicutes CLD04_14715 IPR012337 Ribonuclease H-like superfamily CLD04_14715 IPR024567 Ribonuclease HII/HIII domain CLD04_14715 IPR004641 Ribonuclease HIII CLD04_14715 IPR024568 Ribonuclease HIII, N-terminal CLD04_14715 IPR036397 Ribonuclease H superfamily CLD04_14715 IPR012295 TBP domain superfamily CLD04_14715 IPR001352 Ribonuclease HII/HIII CLD04_14720 IPR005147 tRNA synthetase, B5-domain CLD04_14720 IPR033714 Phenylalanly tRNA synthetase, tRNA-binding-domain CLD04_14720 IPR005146 B3/B4 tRNA-binding domain CLD04_14720 IPR041616 Phenylalanyl tRNA synthetase beta chain, core domain CLD04_14720 IPR009061 Putative DNA-binding domain superfamily CLD04_14720 IPR005121 Ferrodoxin-fold anticodon-binding domain CLD04_14720 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 CLD04_14720 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit CLD04_14720 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily CLD04_14720 IPR012340 Nucleic acid-binding, OB-fold CLD04_14720 IPR002547 tRNA-binding domain CLD04_14725 IPR006195 Aminoacyl-tRNA synthetase, class II CLD04_14725 IPR004529 Phenylalanyl-tRNA synthetase, class IIc, alpha subunit CLD04_14725 IPR022911 Phenylalanine-tRNA ligase alpha chain 1, bacterial CLD04_14725 IPR002319 Phenylalanyl-tRNA synthetase CLD04_14725 IPR010978 Class I and II aminoacyl-tRNA synthetase, tRNA-binding arm CLD04_14725 IPR004188 Phenylalanine-tRNA ligase, class II, N-terminal CLD04_14735 IPR029064 50S ribosomal protein L30e-like CLD04_14735 IPR029028 Alpha/beta knot methyltransferases CLD04_14735 IPR001537 tRNA/rRNA methyltransferase, SpoU type CLD04_14735 IPR013123 RNA 2-O ribose methyltransferase, substrate binding CLD04_14735 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CLD04_14740 IPR017525 Small, acid-soluble spore protein I CLD04_14745 IPR041522 CdaR, GGDEF-like domain CLD04_14745 IPR042070 PucR C-terminal helix-turn-helix domain superfamily CLD04_14745 IPR025736 PucR C-terminal helix-turn-helix domain CLD04_14745 IPR008599 Putative sugar diacid recognition CLD04_14750 IPR016164 FAD-linked oxidase-like, C-terminal CLD04_14750 IPR006094 FAD linked oxidase, N-terminal CLD04_14750 IPR036318 FAD-binding, type PCMH-like superfamily CLD04_14750 IPR016166 FAD-binding domain, PCMH-type CLD04_14750 IPR004113 FAD-linked oxidase, C-terminal CLD04_14750 IPR004490 Glycolate oxidase subunit GlcD CLD04_14750 IPR016171 Vanillyl-alcohol oxidase, C-terminal subdomain 2 CLD04_14755 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLD04_14755 IPR004017 Cysteine-rich domain CLD04_14755 IPR009051 Alpha-helical ferredoxin CLD04_14755 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLD04_14755 IPR012257 Glycolate oxidase, iron-sulphur subunit CLD04_14760 IPR037523 Vicinal oxygen chelate (VOC) domain CLD04_14760 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CLD04_14760 IPR025870 Glyoxalase-like domain CLD04_14770 IPR003706 CstA, N-terminal domain CLD04_14770 IPR025299 CstA, C-terminal domain CLD04_14775 IPR017853 Glycoside hydrolase superfamily CLD04_14775 IPR010720 Alpha-L-arabinofuranosidase, C-terminal CLD04_14775 IPR013780 Glycosyl hydrolase, all-beta CLD04_14780 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_14780 IPR035906 MetI-like superfamily CLD04_14785 IPR035906 MetI-like superfamily CLD04_14785 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_14790 IPR006059 Bacterial extracellular solute-binding protein CLD04_14795 IPR032837 Glycerol-1-phosphate dehydrogenase CLD04_14795 IPR023003 Glycerol-1-phosphate dehydrogenase, bacteria CLD04_14800 IPR036412 HAD-like superfamily CLD04_14800 IPR006357 HAD-superfamily hydrolase, subfamily IIA CLD04_14800 IPR023214 HAD superfamily CLD04_14805 IPR004661 L-ribulose-5-phosphate 4-epimerase CLD04_14805 IPR001303 Class II aldolase/adducin N-terminal CLD04_14805 IPR036409 Class II aldolase/adducin N-terminal domain superfamily CLD04_14810 IPR005929 Ribulokinase CLD04_14810 IPR018484 Carbohydrate kinase, FGGY, N-terminal CLD04_14810 IPR018483 Carbohydrate kinase, FGGY, conserved site CLD04_14810 IPR018485 Carbohydrate kinase, FGGY, C-terminal CLD04_14810 IPR000577 Carbohydrate kinase, FGGY CLD04_14815 IPR009015 L-fucose isomerase, N-terminal/central domain superfamily CLD04_14815 IPR004216 L-fucose/L-arabinose isomerase, C-terminal CLD04_14815 IPR038583 L-arabinose isomerase, N-terminal domain superfamily CLD04_14815 IPR024664 L-arabinose isomerase, C-terminal CLD04_14815 IPR003762 L-arabinose isomerase CLD04_14825 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily CLD04_14825 IPR006710 Glycoside hydrolase, family 43 CLD04_14825 IPR016840 Glycoside hydrolase, family 43, endo-1, 5-alpha-L-arabinosidase CLD04_14830 IPR023367 Peptidase M42, domain 2 CLD04_14830 IPR008007 Peptidase M42 CLD04_14840 IPR010718 Protein of unknown function DUF1294 CLD04_14845 IPR005813 Ribosomal protein L20 CLD04_14845 IPR035566 Ribosomal protein L20, C-terminal CLD04_14850 IPR037229 Ribosomal protein L35 superfamily CLD04_14850 IPR018265 Ribosomal protein L35, conserved site CLD04_14850 IPR021137 Ribosomal protein L35 CLD04_14850 IPR001706 Ribosomal protein L35, non-mitochondrial CLD04_14855 IPR001288 Translation initiation factor 3 CLD04_14855 IPR019813 Translation initiation factor 3, conserved site CLD04_14855 IPR036787 Translation initiation factor 3 (IF-3), N-terminal domain superfamily CLD04_14855 IPR019814 Translation initiation factor 3, N-terminal CLD04_14855 IPR036788 Translation initiation factor 3 (IF-3), C-terminal domain superfamily CLD04_14855 IPR019815 Translation initiation factor 3, C-terminal CLD04_14865 IPR007300 CidB/LrgB family CLD04_14865 IPR024891 Antiholin-like protein LrgB CLD04_14870 IPR005538 LrgA/CidA family CLD04_14870 IPR023736 Antiholin-like protein LrgA CLD04_14875 IPR011006 CheY-like superfamily CLD04_14875 IPR007492 LytTR DNA-binding domain CLD04_14875 IPR001789 Signal transduction response regulator, receiver domain CLD04_14880 IPR011620 Signal transduction histidine kinase, 5TM receptor LytS, transmembrane region CLD04_14880 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_14880 IPR010559 Signal transduction histidine kinase, internal region CLD04_14880 IPR003018 GAF domain CLD04_14880 IPR029016 GAF-like domain superfamily CLD04_14880 IPR005467 Histidine kinase domain CLD04_14880 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_14890 IPR012947 Threonyl/alanyl tRNA synthetase, SAD CLD04_14890 IPR033728 Threonine-tRNA ligase catalytic core domain CLD04_14890 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily CLD04_14890 IPR002320 Threonine-tRNA ligase, class IIa CLD04_14890 IPR012676 TGS-like CLD04_14890 IPR004095 TGS CLD04_14890 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) CLD04_14890 IPR004154 Anticodon-binding CLD04_14890 IPR036621 Anticodon-binding domain superfamily CLD04_14890 IPR012675 Beta-grasp domain superfamily CLD04_14890 IPR006195 Aminoacyl-tRNA synthetase, class II CLD04_14895 IPR014199 Sporulation protein YtxC CLD04_14900 IPR015414 Transmembrane protein TMEM64 CLD04_14900 IPR032816 SNARE associated Golgi protein CLD04_14905 IPR002611 IstB-like ATP-binding protein CLD04_14905 IPR009928 Primosomal DnaI, N-terminal CLD04_14905 IPR003593 AAA+ ATPase domain CLD04_14905 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_14910 IPR006343 DnaD domain CLD04_14915 IPR003796 Ribonucleotide reductase regulator NrdR-like CLD04_14915 IPR005144 ATP-cone domain CLD04_14920 IPR003826 S-adenosylmethionine decarboxylase family, prokaryotic CLD04_14920 IPR016067 S-adenosylmethionine decarboxylase, core CLD04_14920 IPR017716 S-adenosylmethionine decarboxylase proenzyme CLD04_14925 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I CLD04_14925 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site CLD04_14925 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain CLD04_14925 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain CLD04_14925 IPR036291 NAD(P)-binding domain superfamily CLD04_14925 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family CLD04_14940 IPR020471 Aldo/keto reductase CLD04_14940 IPR023210 NADP-dependent oxidoreductase domain CLD04_14940 IPR036812 NADP-dependent oxidoreductase domain superfamily CLD04_14940 IPR018170 Aldo/keto reductase, conserved site CLD04_14945 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_14945 IPR001977 Dephospho-CoA kinase CLD04_14950 IPR003810 Putative manganese efflux pump CLD04_14950 IPR014205 Sporulation protein YtaF CLD04_14955 IPR015886 DNA glycosylase/AP lyase, H2TH DNA-binding CLD04_14955 IPR010663 Zinc finger, FPG/IleRS-type CLD04_14955 IPR000214 Zinc finger, DNA glycosylase/AP lyase-type CLD04_14955 IPR010979 Ribosomal protein S13-like, H2TH CLD04_14955 IPR035937 MutM-like, N-terminal CLD04_14955 IPR015887 DNA glycosylase/AP lyase, zinc finger domain, DNA-binding site CLD04_14955 IPR012319 Formamidopyrimidine-DNA glycosylase, catalytic domain CLD04_14955 IPR020629 Formamidopyrimidine-DNA glycosylase CLD04_14960 IPR012337 Ribonuclease H-like superfamily CLD04_14960 IPR002562 3'-5' exonuclease domain CLD04_14960 IPR018320 DNA polymerase 1 CLD04_14960 IPR029060 PIN-like domain superfamily CLD04_14960 IPR008918 Helix-hairpin-helix motif, class 2 CLD04_14960 IPR020045 DNA polymerase I-like, H3TH domain CLD04_14960 IPR036397 Ribonuclease H superfamily CLD04_14960 IPR001098 DNA-directed DNA polymerase, family A, palm domain CLD04_14960 IPR019760 DNA-directed DNA polymerase, family A, conserved site CLD04_14960 IPR002298 DNA polymerase A CLD04_14960 IPR036279 5'-3' exonuclease, C-terminal domain superfamily CLD04_14960 IPR002421 5'-3' exonuclease, N-terminal CLD04_14960 IPR020046 5'-3' exonuclease, alpha-helical arch, N-terminal CLD04_14965 IPR035965 PAS domain superfamily CLD04_14965 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_14965 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_14965 IPR005467 Histidine kinase domain CLD04_14965 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLD04_14965 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLD04_14965 IPR031967 PhoR, single Cache-like domain CLD04_14965 IPR000014 PAS domain CLD04_14965 IPR013767 PAS fold CLD04_14965 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLD04_14970 IPR016032 Signal transduction response regulator, C-terminal effector CLD04_14970 IPR001789 Signal transduction response regulator, receiver domain CLD04_14970 IPR039420 Transcriptional regulatory protein WalR-like CLD04_14970 IPR001867 OmpR/PhoB-type DNA-binding domain CLD04_14970 IPR011006 CheY-like superfamily CLD04_14970 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_14975 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal CLD04_14975 IPR011275 Malate dehydrogenase, type 3 CLD04_14975 IPR036291 NAD(P)-binding domain superfamily CLD04_14975 IPR001557 L-lactate/malate dehydrogenase CLD04_14975 IPR001236 Lactate/malate dehydrogenase, N-terminal CLD04_14975 IPR022383 Lactate/malate dehydrogenase, C-terminal CLD04_14980 IPR019818 Isocitrate/isopropylmalate dehydrogenase, conserved site CLD04_14980 IPR004439 Isocitrate dehydrogenase NADP-dependent, dimeric, prokaryotic CLD04_14980 IPR024084 Isopropylmalate dehydrogenase-like domain CLD04_14985 IPR016143 Citrate synthase-like, small alpha subdomain CLD04_14985 IPR036969 Citrate synthase superfamily CLD04_14985 IPR024176 Citrate synthase, bacterial-type CLD04_14985 IPR002020 Citrate synthase CLD04_14985 IPR019810 Citrate synthase active site CLD04_14985 IPR011278 2-methylcitrate synthase/citrate synthase type I CLD04_14985 IPR016142 Citrate synthase-like, large alpha subdomain CLD04_14990 IPR007382 Uncharacterised protein family UPF0756, transmembrame CLD04_14995 IPR002549 Transmembrane protein TqsA-like CLD04_14995 IPR014227 Putative transport protein YtvI-like CLD04_15000 IPR007313 FxsA cytoplasmic membrane protein CLD04_15005 IPR036918 Pyruvate kinase, C-terminal domain superfamily CLD04_15005 IPR015793 Pyruvate kinase, barrel CLD04_15005 IPR018209 Pyruvate kinase, active site CLD04_15005 IPR011037 Pyruvate kinase-like, insert domain superfamily CLD04_15005 IPR040442 Pyruvate kinase-like domain superfamily CLD04_15005 IPR015813 Pyruvate/Phosphoenolpyruvate kinase-like domain superfamily CLD04_15005 IPR015806 Pyruvate kinase, insert domain superfamily CLD04_15005 IPR001697 Pyruvate kinase CLD04_15005 IPR015795 Pyruvate kinase, C-terminal CLD04_15005 IPR008279 PEP-utilising enzyme, mobile domain CLD04_15005 IPR036637 Phosphohistidine domain superfamily CLD04_15010 IPR012828 ATP-dependent 6-phosphofructokinase, prokaryotic CLD04_15010 IPR000023 Phosphofructokinase domain CLD04_15010 IPR012003 ATP-dependent 6-phosphofructokinase, prokaryotic-type CLD04_15010 IPR022953 ATP-dependent 6-phosphofructokinase CLD04_15010 IPR015912 Phosphofructokinase, conserved site CLD04_15010 IPR035966 Phosphofructokinase superfamily CLD04_15015 IPR001095 Acetyl-CoA carboxylase, alpha subunit CLD04_15015 IPR029045 ClpP/crotonase-like domain superfamily CLD04_15015 IPR011763 Acetyl-coenzyme A carboxyltransferase, C-terminal CLD04_15020 IPR029045 ClpP/crotonase-like domain superfamily CLD04_15020 IPR011762 Acetyl-coenzyme A carboxyltransferase, N-terminal CLD04_15020 IPR034733 Acetyl-CoA carboxylase CLD04_15020 IPR000438 Acetyl-CoA carboxylase carboxyl transferase, beta subunit CLD04_15020 IPR041010 Acetyl-coA carboxylase zinc finger domain CLD04_15025 IPR036291 NAD(P)-binding domain superfamily CLD04_15025 IPR037062 Malic enzyme, N-terminal domain superfamily CLD04_15025 IPR012301 Malic enzyme, N-terminal domain CLD04_15025 IPR015884 Malic enzyme, conserved site CLD04_15025 IPR001891 Malic oxidoreductase CLD04_15025 IPR012302 Malic enzyme, NAD-binding CLD04_15030 IPR040982 DNA polymerase III alpha subunit finger domain CLD04_15030 IPR011708 Bacterial DNA polymerase III, alpha subunit, NTPase domain CLD04_15030 IPR004365 OB-fold nucleic acid binding domain, AA-tRNA synthetase-type CLD04_15030 IPR004013 PHP domain CLD04_15030 IPR041931 Bacterial DNA polymerase III alpha subunit, thumb domain CLD04_15030 IPR003141 Polymerase/histidinol phosphatase, N-terminal CLD04_15030 IPR029460 DNA polymerase, helix-hairpin-helix motif CLD04_15030 IPR016195 Polymerase/histidinol phosphatase-like CLD04_15030 IPR004805 DNA polymerase III, alpha subunit CLD04_15035 IPR025689 Sporulation protein YtrH CLD04_15050 IPR038763 DHH phosphoesterase superfamily CLD04_15050 IPR001667 DDH domain CLD04_15050 IPR003156 DHHA1 domain CLD04_15055 IPR025618 YtpI-like protein CLD04_15060 IPR006683 Thioesterase domain CLD04_15060 IPR000644 CBS domain CLD04_15060 IPR036390 Winged helix DNA-binding domain superfamily CLD04_15060 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_15060 IPR010766 DRTGG CLD04_15060 IPR029069 HotDog domain superfamily CLD04_15060 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily CLD04_15060 IPR000524 Transcription regulator HTH, GntR CLD04_15065 IPR002781 Transmembrane protein TauE-like CLD04_15075 IPR023468 Riboflavin kinase CLD04_15075 IPR023465 Riboflavin kinase domain superfamily CLD04_15075 IPR015865 Riboflavin kinase domain, bacterial/eukaryotic CLD04_15080 IPR011251 Luciferase-like domain CLD04_15080 IPR016215 Nitrilotriacetate monooxygenase component A/pristinamycin IIA synthase subunit A CLD04_15080 IPR036661 Luciferase-like domain superfamily CLD04_15085 IPR002109 Glutaredoxin CLD04_15085 IPR036249 Thioredoxin-like superfamily CLD04_15090 IPR036661 Luciferase-like domain superfamily CLD04_15090 IPR011251 Luciferase-like domain CLD04_15090 IPR019949 Luciferase family oxidoreductase, group 1 CLD04_15095 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type CLD04_15095 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_15095 IPR017871 ABC transporter, conserved site CLD04_15095 IPR003439 ABC transporter-like CLD04_15095 IPR003593 AAA+ ATPase domain CLD04_15100 IPR035906 MetI-like superfamily CLD04_15100 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_15100 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain CLD04_15105 IPR035906 MetI-like superfamily CLD04_15105 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_15105 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain CLD04_15110 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CLD04_15115 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CLD04_15120 IPR000182 GNAT domain CLD04_15120 IPR016181 Acyl-CoA N-acyltransferase CLD04_15125 IPR036390 Winged helix DNA-binding domain superfamily CLD04_15125 IPR005119 LysR, substrate-binding CLD04_15125 IPR000847 Transcription regulator HTH, LysR CLD04_15125 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_15130 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLD04_15130 IPR001279 Metallo-beta-lactamase CLD04_15130 IPR022877 Protein of unknown funcion UPF0173 CLD04_15135 IPR002347 Short-chain dehydrogenase/reductase SDR CLD04_15135 IPR036291 NAD(P)-binding domain superfamily CLD04_15145 IPR022761 Fumarate lyase, N-terminal CLD04_15145 IPR024083 Fumarase/histidase, N-terminal CLD04_15145 IPR020557 Fumarate lyase, conserved site CLD04_15145 IPR009049 Argininosuccinate lyase CLD04_15145 IPR029419 Argininosuccinate lyase, C-terminal CLD04_15145 IPR008948 L-Aspartase-like CLD04_15145 IPR000362 Fumarate lyase family CLD04_15150 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLD04_15150 IPR023434 Argininosuccinate synthase, type 1 subfamily CLD04_15150 IPR018223 Argininosuccinate synthase, conserved site CLD04_15150 IPR024074 Argininosuccinate synthetase, catalytic/multimerisation domain body CLD04_15150 IPR001518 Argininosuccinate synthase CLD04_15155 IPR012245 Molybdenum cofactor biosynthesis protein MoaB CLD04_15155 IPR001453 MoaB/Mog domain CLD04_15155 IPR008284 Molybdenum cofactor biosynthesis, conserved site CLD04_15155 IPR036425 MoaB/Mog-like domain superfamily CLD04_15160 IPR023865 Aliphatic acid kinase, short-chain, conserved site CLD04_15160 IPR004372 Acetate/propionate kinase CLD04_15160 IPR000890 Aliphatic acid kinase, short-chain CLD04_15165 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_15165 IPR016843 S-adenosyl-L-methionine dependent adenine methyltransferase, bacteria, predicted CLD04_15165 IPR003356 DNA methylase, adenine-specific CLD04_15170 IPR013766 Thioredoxin domain CLD04_15170 IPR002065 Thiol peroxidase Tpx CLD04_15170 IPR036249 Thioredoxin-like superfamily CLD04_15170 IPR013740 Redoxin CLD04_15170 IPR018219 Thiol peroxidase conserved site CLD04_15175 IPR014229 Sporulation protein YtfJ CLD04_15180 IPR021338 Protein of unknown function DUF2953 CLD04_15185 IPR010432 RDD CLD04_15190 IPR029045 ClpP/crotonase-like domain superfamily CLD04_15190 IPR002142 Peptidase S49 CLD04_15190 IPR004635 Peptidase S49, SppA CLD04_15195 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal CLD04_15195 IPR002504 NAD kinase CLD04_15195 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily CLD04_15195 IPR017437 ATP-NAD kinase, PpnK-type, C-terminal CLD04_15200 IPR013108 Amidohydrolase 3 CLD04_15200 IPR011059 Metal-dependent hydrolase, composite domain superfamily CLD04_15200 IPR032466 Metal-dependent hydrolase CLD04_15200 IPR033932 YtcJ like CLD04_15205 IPR042099 AMP-dependent synthetase-like superfamily CLD04_15205 IPR000873 AMP-dependent synthetase/ligase CLD04_15205 IPR025110 AMP-binding enzyme, C-terminal domain CLD04_15205 IPR020845 AMP-binding, conserved site CLD04_15210 IPR038300 SASP, alpha/beta-type superfamily CLD04_15210 IPR001448 Small acid-soluble spore protein, alpha/beta-type CLD04_15210 IPR018126 Small acid-soluble spore protein, alpha/beta-type, conserved site CLD04_15215 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLD04_15215 IPR020536 Thil, AANH domain CLD04_15215 IPR003720 tRNA sulfurtransferase ThiI CLD04_15215 IPR004114 THUMP domain CLD04_15220 IPR000192 Aminotransferase class V domain CLD04_15220 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_15220 IPR016454 Cysteine desulfurase CLD04_15220 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_15220 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_15225 IPR004685 Branched-chain amino acid transport system II carrier protein CLD04_15230 IPR010379 Septation ring formation regulator EzrA CLD04_15235 IPR016195 Polymerase/histidinol phosphatase-like CLD04_15235 IPR010140 Histidinol phosphate phosphatase, HisJ CLD04_15235 IPR004013 PHP domain CLD04_15240 IPR023772 DNA-binding HTH domain, TetR-type, conserved site CLD04_15240 IPR009057 Homeobox-like domain superfamily CLD04_15240 IPR001647 DNA-binding HTH domain, TetR-type CLD04_15245 IPR000614 Free Met sulfoxide reductase conserved site CLD04_15245 IPR003018 GAF domain CLD04_15245 IPR029016 GAF-like domain superfamily CLD04_15250 IPR029787 Nucleotide cyclase CLD04_15250 IPR029016 GAF-like domain superfamily CLD04_15250 IPR000160 GGDEF domain CLD04_15260 IPR001912 Ribosomal protein S4/S9, N-terminal CLD04_15260 IPR005709 Ribosomal protein S4, bacterial-type CLD04_15260 IPR018079 Ribosomal protein S4, conserved site CLD04_15260 IPR022801 Ribosomal protein S4/S9 CLD04_15260 IPR036986 RNA-binding S4 domain superfamily CLD04_15260 IPR002942 RNA-binding S4 domain CLD04_15270 IPR002305 Aminoacyl-tRNA synthetase, class Ic CLD04_15270 IPR002307 Tyrosine-tRNA ligase CLD04_15270 IPR036986 RNA-binding S4 domain superfamily CLD04_15270 IPR002942 RNA-binding S4 domain CLD04_15270 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CLD04_15270 IPR024107 Tyrosine-tRNA ligase, bacterial-type, type 1 CLD04_15270 IPR024088 Tyrosine-tRNA ligase, bacterial-type CLD04_15270 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLD04_15280 IPR020845 AMP-binding, conserved site CLD04_15280 IPR042099 AMP-dependent synthetase-like superfamily CLD04_15280 IPR025110 AMP-binding enzyme, C-terminal domain CLD04_15280 IPR000873 AMP-dependent synthetase/ligase CLD04_15285 IPR024699 Acetoin utilization protein AcuA CLD04_15285 IPR016181 Acyl-CoA N-acyltransferase CLD04_15285 IPR000182 GNAT domain CLD04_15290 IPR000644 CBS domain CLD04_15295 IPR000286 Histone deacetylase family CLD04_15295 IPR037138 Histone deacetylase domain superfamily CLD04_15295 IPR023696 Ureohydrolase domain superfamily CLD04_15295 IPR003085 Acetoin utilization protein AcuC CLD04_15295 IPR023801 Histone deacetylase domain CLD04_15300 IPR036737 OmpA-like domain superfamily CLD04_15300 IPR006665 OmpA-like domain CLD04_15300 IPR025713 Motility protein B, N-terminal domain CLD04_15305 IPR002898 MotA/TolQ/ExbB proton channel CLD04_15305 IPR000540 Flagellar motor protein MotA, conserved site CLD04_15310 IPR028082 Periplasmic binding protein-like I CLD04_15310 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLD04_15310 IPR000843 LacI-type HTH domain CLD04_15310 IPR006377 Catabolite control protein A CLD04_15315 IPR010954 Chorismate mutase, Firmicutes/Deinococcus CLD04_15315 IPR036979 Chorismate mutase domain superfamily CLD04_15315 IPR006218 DAHP synthetase I/KDSA CLD04_15315 IPR002701 Chorismate mutase II, prokaryotic-type CLD04_15315 IPR013785 Aldolase-type TIM barrel CLD04_15315 IPR006268 Phospho-2-dehydro-3-deoxyheptonate aldolase, subtype 2 CLD04_15320 IPR022551 Protein of unknown function DUF2847 CLD04_15320 IPR036249 Thioredoxin-like superfamily CLD04_15325 IPR024623 Uncharacterised protein family YtxH CLD04_15330 IPR009293 Uncharacterised protein family UPF0478 CLD04_15335 IPR036565 Mur-like, catalytic domain superfamily CLD04_15335 IPR000713 Mur ligase, N-terminal catalytic domain CLD04_15335 IPR004101 Mur ligase, C-terminal CLD04_15335 IPR036615 Mur ligase, C-terminal domain superfamily CLD04_15335 IPR013221 Mur ligase, central CLD04_15335 IPR005758 UDP-N-acetylmuramate--L-alanine ligase CLD04_15340 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_15340 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_15340 IPR002543 FtsK domain CLD04_15340 IPR036390 Winged helix DNA-binding domain superfamily CLD04_15340 IPR041027 FtsK alpha domain CLD04_15340 IPR003593 AAA+ ATPase domain CLD04_15340 IPR018541 FtsK gamma domain CLD04_15345 IPR037154 YtpR-like superfamily CLD04_15345 IPR033714 Phenylalanly tRNA synthetase, tRNA-binding-domain CLD04_15345 IPR002547 tRNA-binding domain CLD04_15345 IPR012340 Nucleic acid-binding, OB-fold CLD04_15345 IPR027855 Domain of unknown function DUF4479 CLD04_15350 IPR010838 Protein of unknown unction DUF1444 CLD04_15355 IPR036249 Thioredoxin-like superfamily CLD04_15355 IPR013766 Thioredoxin domain CLD04_15365 IPR008007 Peptidase M42 CLD04_15365 IPR023367 Peptidase M42, domain 2 CLD04_15370 IPR025711 PepSY domain CLD04_15375 IPR015884 Malic enzyme, conserved site CLD04_15375 IPR012301 Malic enzyme, N-terminal domain CLD04_15375 IPR012302 Malic enzyme, NAD-binding CLD04_15375 IPR036291 NAD(P)-binding domain superfamily CLD04_15375 IPR037062 Malic enzyme, N-terminal domain superfamily CLD04_15375 IPR001891 Malic oxidoreductase CLD04_15380 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLD04_15380 IPR001279 Metallo-beta-lactamase CLD04_15385 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_15385 IPR003358 tRNA (guanine-N-7) methyltransferase, Trmb type CLD04_15390 IPR025547 YtzH-like protein CLD04_15395 IPR011009 Protein kinase-like domain superfamily CLD04_15395 IPR002575 Aminoglycoside phosphotransferase CLD04_15400 IPR013780 Glycosyl hydrolase, all-beta CLD04_15400 IPR013783 Immunoglobulin-like fold CLD04_15400 IPR004193 Glycoside hydrolase, family 13, N-terminal CLD04_15400 IPR006047 Glycosyl hydrolase, family 13, catalytic domain CLD04_15400 IPR014756 Immunoglobulin E-set CLD04_15400 IPR040697 Pullulanase, N1 domain CLD04_15400 IPR017853 Glycoside hydrolase superfamily CLD04_15400 IPR011840 Pullulanase, type I CLD04_15405 IPR017438 Inorganic polyphosphate/ATP-NAD kinase, N-terminal CLD04_15405 IPR001206 Diacylglycerol kinase, catalytic domain CLD04_15405 IPR005218 Diacylglycerol/lipid kinase CLD04_15405 IPR016064 NAD kinase/diacylglycerol kinase-like domain superfamily CLD04_15410 IPR012397 Pullulan 6-glucanohydrolase CLD04_15415 IPR004175 RNA 2',3'-cyclic phosphodiesterase CLD04_15415 IPR009097 Cyclic phosphodiesterase CLD04_15420 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CLD04_15420 IPR005856 Cysteine synthase CLD04_15420 IPR005859 Cysteine synthase CysK CLD04_15420 IPR001926 Pyridoxal-phosphate dependent enzyme CLD04_15420 IPR001216 Cysteine synthase/cystathionine beta-synthase, pyridoxal-phosphate attachment site CLD04_15430 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site CLD04_15430 IPR002933 Peptidase M20 CLD04_15430 IPR036264 Bacterial exopeptidase dimerisation domain CLD04_15430 IPR010964 Peptidase M20A, peptidase V-related CLD04_15435 IPR006043 Xanthine/uracil/vitamin C permease CLD04_15435 IPR026033 Azaguanine-like transporters CLD04_15440 IPR010288 Bacterial ABC transporter EcsB CLD04_15445 IPR003593 AAA+ ATPase domain CLD04_15445 IPR017871 ABC transporter, conserved site CLD04_15445 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_15445 IPR003439 ABC transporter-like CLD04_15450 IPR036390 Winged helix DNA-binding domain superfamily CLD04_15450 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_15450 IPR001034 DeoR-type HTH domain CLD04_15455 IPR042092 Pseudouridine synthase, RsuA/RluB/E/F, catalytic domain CLD04_15455 IPR006145 Pseudouridine synthase, RsuA/RluA CLD04_15455 IPR002942 RNA-binding S4 domain CLD04_15455 IPR020103 Pseudouridine synthase, catalytic domain superfamily CLD04_15455 IPR000748 Pseudouridine synthase, RsuA/RluB/E/F CLD04_15455 IPR018496 Pseudouridine synthase, RsuA/RluB/E/F, conserved site CLD04_15455 IPR036986 RNA-binding S4 domain superfamily CLD04_15460 IPR002797 Polysaccharide biosynthesis protein CLD04_15460 IPR024923 Peptidoglycan biosynthesis protein, SpoVB-type CLD04_15460 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain CLD04_15465 IPR036188 FAD/NAD(P)-binding domain superfamily CLD04_15465 IPR023166 HI0933-like insert domain superfamily CLD04_15465 IPR004792 3-Dehydro-bile acid delta(4,6)-reductase-like CLD04_15470 IPR018093 BCCT transporter, conserved site CLD04_15470 IPR000060 BCCT transporter family CLD04_15475 IPR020296 Sporulation protein Cse60 CLD04_15480 IPR006938 Protein of unknown function DUF624 CLD04_15485 IPR036291 NAD(P)-binding domain superfamily CLD04_15485 IPR004104 Oxidoreductase, C-terminal CLD04_15485 IPR000683 Oxidoreductase, N-terminal CLD04_15495 IPR008928 Six-hairpin glycosidase superfamily CLD04_15495 IPR010905 Glycosyl hydrolase, family 88 CLD04_15495 IPR012341 Six-hairpin glycosidase-like superfamily CLD04_15500 IPR035906 MetI-like superfamily CLD04_15500 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_15510 IPR006059 Bacterial extracellular solute-binding protein CLD04_15515 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_15515 IPR035906 MetI-like superfamily CLD04_15520 IPR036291 NAD(P)-binding domain superfamily CLD04_15520 IPR001509 NAD-dependent epimerase/dehydratase CLD04_15525 IPR017972 Cytochrome P450, conserved site CLD04_15525 IPR002397 Cytochrome P450, B-class CLD04_15525 IPR036396 Cytochrome P450 superfamily CLD04_15525 IPR001128 Cytochrome P450 CLD04_15530 IPR024177 Biotin synthase CLD04_15530 IPR013785 Aldolase-type TIM barrel CLD04_15530 IPR010722 Biotin and thiamin synthesis-associated domain CLD04_15530 IPR006638 Elp3/MiaB/NifB CLD04_15530 IPR007197 Radical SAM CLD04_15530 IPR002684 Biotin synthase/Biotin biosynthesis bifunctional protein BioAB CLD04_15535 IPR004472 Dethiobiotin synthase BioD CLD04_15535 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_15540 IPR001917 Aminotransferase, class-II, pyridoxal-phosphate binding site CLD04_15540 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_15540 IPR004723 8-amino-7-oxononanoate synthase, Archaea/Proteobacteria type CLD04_15540 IPR004839 Aminotransferase, class I/classII CLD04_15540 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_15540 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_15545 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_15545 IPR005815 Adenosylmethionine--8-amino-7-oxononanoate aminotransferase BioA CLD04_15545 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_15545 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_15545 IPR005814 Aminotransferase class-III CLD04_15550 IPR005499 6-carboxyhexanoate--CoA ligase CLD04_15555 IPR002925 Dienelactone hydrolase CLD04_15555 IPR002471 Peptidase S9, serine active site CLD04_15555 IPR029058 Alpha/Beta hydrolase fold CLD04_15580 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal CLD04_15580 IPR036291 NAD(P)-binding domain superfamily CLD04_15580 IPR001088 Glycoside hydrolase, family 4 CLD04_15580 IPR019802 Glycoside hydrolase, family 4, conserved site CLD04_15580 IPR022616 Glycosyl hydrolase, family 4, C-terminal CLD04_15585 IPR001763 Rhodanese-like domain CLD04_15585 IPR036873 Rhodanese-like domain superfamily CLD04_15590 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding CLD04_15590 IPR009008 Valyl/Leucyl/Isoleucyl-tRNA synthetase, editing domain CLD04_15590 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLD04_15590 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CLD04_15590 IPR013155 Methionyl/Valyl/Leucyl/Isoleucyl-tRNA synthetase, anticodon-binding CLD04_15590 IPR025709 Leucyl-tRNA synthetase, editing domain CLD04_15590 IPR015413 Methionyl/Leucyl tRNA synthetase CLD04_15590 IPR002300 Aminoacyl-tRNA synthetase, class Ia CLD04_15590 IPR002302 Leucine-tRNA ligase CLD04_15595 IPR025353 Protein of unknown function DUF4257) CLD04_15600 IPR035965 PAS domain superfamily CLD04_15600 IPR002645 STAS domain CLD04_15600 IPR001610 PAC motif CLD04_15600 IPR000014 PAS domain CLD04_15600 IPR000700 PAS-associated, C-terminal CLD04_15600 IPR036513 STAS domain superfamily CLD04_15605 IPR011701 Major facilitator superfamily CLD04_15605 IPR020846 Major facilitator superfamily domain CLD04_15605 IPR036259 MFS transporter superfamily CLD04_15610 IPR006876 LMBR1-like membrane protein CLD04_15615 IPR027022 ABC transporter permease protein, BceB-type CLD04_15615 IPR003838 ABC transporter permease protein domain CLD04_15620 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_15620 IPR003439 ABC transporter-like CLD04_15620 IPR003593 AAA+ ATPase domain CLD04_15625 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_15625 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLD04_15625 IPR005467 Histidine kinase domain CLD04_15625 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_15630 IPR039420 Transcriptional regulatory protein WalR-like CLD04_15630 IPR001789 Signal transduction response regulator, receiver domain CLD04_15630 IPR016032 Signal transduction response regulator, C-terminal effector CLD04_15630 IPR001867 OmpR/PhoB-type DNA-binding domain CLD04_15630 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_15630 IPR011006 CheY-like superfamily CLD04_15635 IPR025857 MacB-like periplasmic core domain CLD04_15635 IPR003838 ABC transporter permease protein domain CLD04_15640 IPR003593 AAA+ ATPase domain CLD04_15640 IPR003439 ABC transporter-like CLD04_15640 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_15640 IPR017871 ABC transporter, conserved site CLD04_15645 IPR023264 ABC transporter, acetoin utilisation, predicted permease Ytrc/YtrD CLD04_15650 IPR023264 ABC transporter, acetoin utilisation, predicted permease Ytrc/YtrD CLD04_15655 IPR003593 AAA+ ATPase domain CLD04_15655 IPR003439 ABC transporter-like CLD04_15655 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_15660 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_15660 IPR000524 Transcription regulator HTH, GntR CLD04_15660 IPR036390 Winged helix DNA-binding domain superfamily CLD04_15665 IPR019668 Uncharacterised protein family YtzC CLD04_15670 IPR006638 Elp3/MiaB/NifB CLD04_15670 IPR032432 Radical SAM, C-terminal extension CLD04_15670 IPR005911 Protein YhcC-like CLD04_15670 IPR023404 Radical SAM, alpha/beta horseshoe CLD04_15670 IPR007197 Radical SAM CLD04_15670 IPR039661 ELP3/YhcC CLD04_15675 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_15675 IPR010719 Putative rRNA methylase CLD04_15680 IPR019712 Tetraprenyl-beta-curcumene synthase YtpB-like CLD04_15685 IPR000073 Alpha/beta hydrolase fold-1 CLD04_15685 IPR022742 Serine aminopeptidase, S33 CLD04_15685 IPR029058 Alpha/Beta hydrolase fold CLD04_15690 IPR001451 Hexapeptide repeat CLD04_15690 IPR011004 Trimeric LpxA-like superfamily CLD04_15700 IPR029055 Nucleophile aminohydrolases, N-terminal CLD04_15700 IPR017932 Glutamine amidotransferase type 2 domain CLD04_15700 IPR001962 Asparagine synthase CLD04_15700 IPR006426 Asparagine synthase, glutamine-hydrolyzing CLD04_15700 IPR033738 Asparagine synthase, N-terminal domain CLD04_15705 IPR022630 S-adenosylmethionine synthetase, C-terminal CLD04_15705 IPR022636 S-adenosylmethionine synthetase superfamily CLD04_15705 IPR002133 S-adenosylmethionine synthetase CLD04_15705 IPR022628 S-adenosylmethionine synthetase, N-terminal CLD04_15705 IPR022631 S-adenosylmethionine synthetase, conserved site CLD04_15705 IPR022629 S-adenosylmethionine synthetase, central domain CLD04_15710 IPR013035 Phosphoenolpyruvate carboxykinase, C-terminal CLD04_15710 IPR015994 Phosphoenolpyruvate carboxykinase (ATP), conserved site CLD04_15710 IPR008210 Phosphoenolpyruvate carboxykinase, N-terminal CLD04_15710 IPR001272 Phosphoenolpyruvate carboxykinase, ATP-utilising CLD04_15715 IPR019699 Protein of unknown function DUF2584 CLD04_15715 IPR015947 PUA-like superfamily CLD04_15730 IPR017871 ABC transporter, conserved site CLD04_15730 IPR003593 AAA+ ATPase domain CLD04_15730 IPR003439 ABC transporter-like CLD04_15730 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_15735 IPR035906 MetI-like superfamily CLD04_15735 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_15740 IPR020084 NUDIX hydrolase, conserved site CLD04_15740 IPR000086 NUDIX hydrolase domain CLD04_15740 IPR014078 Nucleoside triphosphatase YtkD CLD04_15740 IPR020476 NUDIX hydrolase CLD04_15740 IPR015797 NUDIX hydrolase-like domain superfamily CLD04_15745 IPR006480 Bacteriophage holin family CLD04_15750 IPR008331 Ferritin/DPS protein domain CLD04_15750 IPR002177 DNA-binding protein Dps CLD04_15750 IPR023188 DNA-binding protein Dps, conserved site CLD04_15750 IPR012347 Ferritin-like CLD04_15750 IPR009078 Ferritin-like superfamily CLD04_15760 IPR032693 YtkA-like domain CLD04_15765 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like CLD04_15765 IPR037005 S-ribosylhomocysteinase (LuxS) superfamily CLD04_15765 IPR003815 S-ribosylhomocysteinase (LuxS) CLD04_15770 IPR002696 Putative membrane protein insertion efficiency factor CLD04_15775 IPR036874 Carbonic anhydrase superfamily CLD04_15775 IPR001765 Carbonic anhydrase CLD04_15780 IPR002150 Ribosomal protein L31 CLD04_15780 IPR034704 L28p-like CLD04_15780 IPR042105 Ribosomal protein L31 superfamily CLD04_15780 IPR027493 Ribosomal protein L31 type B CLD04_15785 IPR002585 Cytochrome ubiquinol oxidase subunit 1 CLD04_15790 IPR003317 Cytochrome ubiquinol oxidase subunit 2 CLD04_15795 IPR011437 Domain of unknown function DUF1540 CLD04_15800 IPR001626 ABC transporter, TroCD-like CLD04_15800 IPR037294 ABC transporter, BtuC-like CLD04_15805 IPR037294 ABC transporter, BtuC-like CLD04_15805 IPR001626 ABC transporter, TroCD-like CLD04_15805 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_15805 IPR036390 Winged helix DNA-binding domain superfamily CLD04_15810 IPR003593 AAA+ ATPase domain CLD04_15810 IPR003439 ABC transporter-like CLD04_15810 IPR017871 ABC transporter, conserved site CLD04_15810 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_15815 IPR006128 Adhesion lipoprotein CLD04_15815 IPR006127 Periplasmic solute binding protein, ZnuA-like CLD04_15815 IPR006129 Adhesin B CLD04_15825 IPR010197 o-Succinylbenzoate synthase, MenC type 2 CLD04_15825 IPR036849 Enolase-like, C-terminal domain superfamily CLD04_15825 IPR029017 Enolase-like, N-terminal CLD04_15825 IPR013341 Mandelate racemase/muconate lactonizing enzyme, N-terminal domain CLD04_15825 IPR029065 Enolase C-terminal domain-like CLD04_15825 IPR013342 Mandelate racemase/muconate lactonizing enzyme, C-terminal CLD04_15830 IPR025110 AMP-binding enzyme, C-terminal domain CLD04_15830 IPR000873 AMP-dependent synthetase/ligase CLD04_15830 IPR020845 AMP-binding, conserved site CLD04_15830 IPR042099 AMP-dependent synthetase-like superfamily CLD04_15830 IPR010192 2-succinylbenzoate--CoA ligase CLD04_15835 IPR014748 Enoyl-CoA hydratase, C-terminal CLD04_15835 IPR001753 Enoyl-CoA hydratase/isomerase CLD04_15835 IPR029045 ClpP/crotonase-like domain superfamily CLD04_15835 IPR010198 1,4-Dihydroxy-2-naphthoyl-CoA synthase, MenB CLD04_15835 IPR018376 Enoyl-CoA hydratase/isomerase, conserved site CLD04_15840 IPR000073 Alpha/beta hydrolase fold-1 CLD04_15840 IPR000639 Epoxide hydrolase-like CLD04_15840 IPR022485 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase CLD04_15840 IPR029058 Alpha/Beta hydrolase fold CLD04_15845 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain CLD04_15845 IPR032264 Menaquinone biosynthesis protein MenD, middle domain CLD04_15845 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding CLD04_15845 IPR029061 Thiamin diphosphate-binding fold CLD04_15845 IPR029035 DHS-like NAD/FAD-binding domain superfamily CLD04_15845 IPR004433 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylic-acid synthase CLD04_15850 IPR034681 Isochorismate synthase MenF CLD04_15850 IPR005801 ADC synthase CLD04_15850 IPR015890 Chorismate-utilising enzyme, C-terminal CLD04_15850 IPR004561 Isochorismate synthase CLD04_15855 IPR014240 Regulatory protein, YteA family CLD04_15855 IPR000962 Zinc finger, DksA/TraR C4-type CLD04_15855 IPR037187 DksA, N-terminal domain superfamily CLD04_15860 IPR029044 Nucleotide-diphospho-sugar transferases CLD04_15860 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type CLD04_15860 IPR005835 Nucleotidyl transferase domain CLD04_15865 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal CLD04_15865 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CLD04_15865 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily CLD04_15865 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation CLD04_15865 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal CLD04_15865 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type CLD04_15865 IPR036291 NAD(P)-binding domain superfamily CLD04_15865 IPR017476 UDP-glucose/GDP-mannose dehydrogenase CLD04_15870 IPR036291 NAD(P)-binding domain superfamily CLD04_15870 IPR001509 NAD-dependent epimerase/dehydratase CLD04_15875 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain CLD04_15875 IPR001296 Glycosyl transferase, family 1 CLD04_15885 IPR011009 Protein kinase-like domain superfamily CLD04_15885 IPR014255 Spore coat protein CotS CLD04_15890 IPR001296 Glycosyl transferase, family 1 CLD04_15890 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain CLD04_15895 IPR011009 Protein kinase-like domain superfamily CLD04_15895 IPR014255 Spore coat protein CotS CLD04_15895 IPR002575 Aminoglycoside phosphotransferase CLD04_15900 IPR038330 TspO/MBR-related superfamily CLD04_15900 IPR004307 TspO/MBR-related protein CLD04_15905 IPR011833 Glycogen/starch/alpha-glucan phosphorylase CLD04_15905 IPR035090 Phosphorylase pyridoxal-phosphate attachment site CLD04_15905 IPR000811 Glycosyl transferase, family 35 CLD04_15910 IPR011835 Bacterial/plant glycogen synthase CLD04_15910 IPR001296 Glycosyl transferase, family 1 CLD04_15910 IPR013534 Starch synthase, catalytic domain CLD04_15915 IPR011004 Trimeric LpxA-like superfamily CLD04_15915 IPR011832 Glucose-1-phosphate adenylyltransferase, GlgD subunit CLD04_15915 IPR005835 Nucleotidyl transferase domain CLD04_15915 IPR029044 Nucleotide-diphospho-sugar transferases CLD04_15920 IPR011004 Trimeric LpxA-like superfamily CLD04_15920 IPR029044 Nucleotide-diphospho-sugar transferases CLD04_15920 IPR005835 Nucleotidyl transferase domain CLD04_15920 IPR023049 Glucose-1-phosphate adenylyltransferase GlgC, bacterial CLD04_15920 IPR005836 ADP-glucose pyrophosphorylase, conserved site CLD04_15920 IPR011831 Glucose-1-phosphate adenylyltransferase CLD04_15925 IPR004193 Glycoside hydrolase, family 13, N-terminal CLD04_15925 IPR006048 Alpha-amylase/branching enzyme, C-terminal all beta CLD04_15925 IPR037439 1,4-alpha-glucan-branching enzyme CLD04_15925 IPR013780 Glycosyl hydrolase, all-beta CLD04_15925 IPR017853 Glycoside hydrolase superfamily CLD04_15925 IPR013783 Immunoglobulin-like fold CLD04_15925 IPR014756 Immunoglobulin E-set CLD04_15925 IPR006407 1,4-alpha-glucan-branching enzyme, GlgB CLD04_15925 IPR006047 Glycosyl hydrolase, family 13, catalytic domain CLD04_16050 IPR012651 Thiamine transporter ThiT CLD04_16055 IPR016181 Acyl-CoA N-acyltransferase CLD04_16055 IPR000182 GNAT domain CLD04_16060 IPR001107 Band 7 domain CLD04_16060 IPR036013 Band 7/SPFH domain superfamily CLD04_16060 IPR031905 Flotillin, C-terminal domain CLD04_16060 IPR027705 Flotillin family CLD04_16070 IPR034660 DinB/YfiT-like putative metalloenzymes CLD04_16070 IPR024775 DinB-like domain CLD04_16075 IPR011037 Pyruvate kinase-like, insert domain superfamily CLD04_16075 IPR005302 Molybdenum cofactor sulfurase, C-terminal CLD04_16080 IPR039697 Iron-type alcohol dehydrogenase-like CLD04_16080 IPR018211 Alcohol dehydrogenase, iron-type, conserved site CLD04_16080 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA CLD04_16090 IPR036390 Winged helix DNA-binding domain superfamily CLD04_16090 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_16090 IPR026282 DNA-binding protein, MJ1563 type CLD04_16095 IPR038480 YuaB-like superfamily CLD04_16095 IPR034650 YuaB-like CLD04_16105 IPR036291 NAD(P)-binding domain superfamily CLD04_16105 IPR003148 Regulator of K+ conductance, N-terminal CLD04_16105 IPR006037 Regulator of K+ conductance, C-terminal CLD04_16105 IPR036721 Regulator of K+ conductance, C-terminal domain superfamily CLD04_16110 IPR004772 TrkH potassium transport family CLD04_16110 IPR003445 Cation transporter CLD04_16115 IPR008024 YiaAB two helix CLD04_16115 IPR038972 Inner membrane protein YiaA-like CLD04_16120 IPR025987 GW domain CLD04_16120 IPR038200 GW domain superfamily CLD04_16120 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain CLD04_16125 IPR036259 MFS transporter superfamily CLD04_16125 IPR020846 Major facilitator superfamily domain CLD04_16125 IPR011701 Major facilitator superfamily CLD04_16130 IPR014710 RmlC-like jelly roll fold CLD04_16130 IPR010300 Cysteine dioxygenase type I CLD04_16130 IPR011051 RmlC-like cupin domain superfamily CLD04_16140 IPR003824 Undecaprenyl-diphosphatase UppP CLD04_16145 IPR002549 Transmembrane protein TqsA-like CLD04_16150 IPR000683 Oxidoreductase, N-terminal CLD04_16150 IPR036291 NAD(P)-binding domain superfamily CLD04_16150 IPR004104 Oxidoreductase, C-terminal CLD04_16155 IPR009308 Rhamnose isomerase CLD04_16155 IPR036237 Xylose isomerase-like superfamily CLD04_16160 IPR008000 Rhamnose/fucose mutarotase CLD04_16160 IPR013448 L-rhamnose mutarotase CLD04_16160 IPR011008 Dimeric alpha-beta barrel CLD04_16165 IPR018485 Carbohydrate kinase, FGGY, C-terminal CLD04_16165 IPR018484 Carbohydrate kinase, FGGY, N-terminal CLD04_16165 IPR013449 Rhamnulokinase CLD04_16165 IPR000577 Carbohydrate kinase, FGGY CLD04_16170 IPR018356 Transcription regulator, HTH DeoR-type, conserved site CLD04_16170 IPR014036 DeoR C-terminal sensor domain CLD04_16170 IPR001034 DeoR-type HTH domain CLD04_16170 IPR036390 Winged helix DNA-binding domain superfamily CLD04_16170 IPR037171 NagB/RpiA transferase-like CLD04_16170 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_16175 IPR013454 Bifunctional rhamnulose-1-phosphate aldolase/alcohol dehydrogenase CLD04_16175 IPR002347 Short-chain dehydrogenase/reductase SDR CLD04_16175 IPR036409 Class II aldolase/adducin N-terminal domain superfamily CLD04_16175 IPR036291 NAD(P)-binding domain superfamily CLD04_16175 IPR001303 Class II aldolase/adducin N-terminal CLD04_16185 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding CLD04_16185 IPR003660 HAMP domain CLD04_16185 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLD04_16185 IPR029151 Periplasmic sensor-like domain superfamily CLD04_16185 IPR033479 Double Cache domain 1 CLD04_16190 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLD04_16190 IPR003660 HAMP domain CLD04_16190 IPR029151 Periplasmic sensor-like domain superfamily CLD04_16190 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding CLD04_16190 IPR033479 Double Cache domain 1 CLD04_16195 IPR003660 HAMP domain CLD04_16195 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLD04_16195 IPR029151 Periplasmic sensor-like domain superfamily CLD04_16195 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding CLD04_16195 IPR033479 Double Cache domain 1 CLD04_16200 IPR003122 Chemotaxis methyl-accepting receptor Tar-related, ligand-binding CLD04_16200 IPR033479 Double Cache domain 1 CLD04_16200 IPR003660 HAMP domain CLD04_16200 IPR029151 Periplasmic sensor-like domain superfamily CLD04_16200 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLD04_16205 IPR020916 Protein-glutamine gamma-glutamyltransferase, bacteria CLD04_16215 IPR035917 YjbQ-like superfamily CLD04_16215 IPR001602 Uncharacterised protein family UPF0047 CLD04_16220 IPR032091 Maltogenic Amylase, C-terminal CLD04_16220 IPR017853 Glycoside hydrolase superfamily CLD04_16220 IPR013780 Glycosyl hydrolase, all-beta CLD04_16220 IPR006047 Glycosyl hydrolase, family 13, catalytic domain CLD04_16225 IPR002550 CNNM, transmembrane domain CLD04_16225 IPR036318 FAD-binding, type PCMH-like superfamily CLD04_16225 IPR005170 Transporter-associated domain CLD04_16225 IPR000644 CBS domain CLD04_16225 IPR016169 FAD-binding, type PCMH, subdomain 2 CLD04_16230 IPR007395 Putative neutral zinc metallopeptidase CLD04_16240 IPR038193 Mistic superfamily CLD04_16240 IPR021078 Membrane-integrating protein Mistic CLD04_16245 IPR013099 Potassium channel domain CLD04_16245 IPR036291 NAD(P)-binding domain superfamily CLD04_16245 IPR003148 Regulator of K+ conductance, N-terminal CLD04_16250 IPR036491 YugN-like superfamily CLD04_16250 IPR014967 Uncharacterised protein family, YugN-like CLD04_16260 IPR035482 Phosphoglucose isomerase, SIS domain 2 CLD04_16260 IPR035476 Phosphoglucose isomerase, SIS domain 1 CLD04_16260 IPR018189 Phosphoglucose isomerase, conserved site CLD04_16260 IPR001672 Phosphoglucose isomerase (PGI) CLD04_16265 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA CLD04_16265 IPR018211 Alcohol dehydrogenase, iron-type, conserved site CLD04_16270 IPR001670 Alcohol dehydrogenase, iron-type/glycerol dehydrogenase GldA CLD04_16270 IPR018211 Alcohol dehydrogenase, iron-type, conserved site CLD04_16275 IPR007211 Protein of unknown function DUF378 CLD04_16280 IPR022967 RNA-binding domain, S1 CLD04_16280 IPR012340 Nucleic acid-binding, OB-fold CLD04_16280 IPR003029 S1 domain CLD04_16285 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site CLD04_16285 IPR004839 Aminotransferase, class I/classII CLD04_16285 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_16285 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_16285 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_16290 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_16290 IPR011008 Dimeric alpha-beta barrel CLD04_16290 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CLD04_16290 IPR019888 Transcription regulator AsnC-type CLD04_16290 IPR000485 AsnC-type HTH domain CLD04_16290 IPR036390 Winged helix DNA-binding domain superfamily CLD04_16295 IPR013595 Peptidase S33 tripeptidyl aminopeptidase-like, C-terminal CLD04_16295 IPR000639 Epoxide hydrolase-like CLD04_16295 IPR000073 Alpha/beta hydrolase fold-1 CLD04_16295 IPR029058 Alpha/Beta hydrolase fold CLD04_16300 IPR015053 Protein of unknown function DUF1871 CLD04_16300 IPR023162 Apc36109-like domain superfamily CLD04_16305 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_16305 IPR027619 Putative C-S lyase CLD04_16305 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_16305 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_16305 IPR004839 Aminotransferase, class I/classII CLD04_16310 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLD04_16310 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLD04_16310 IPR005467 Histidine kinase domain CLD04_16310 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_16310 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_16310 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLD04_16315 IPR038080 Kinase associated protein B superfamily CLD04_16315 IPR014916 Kinase associated protein B CLD04_16320 IPR013520 Exonuclease, RNase T/DNA polymerase III CLD04_16320 IPR012337 Ribonuclease H-like superfamily CLD04_16320 IPR036397 Ribonuclease H superfamily CLD04_16330 IPR020846 Major facilitator superfamily domain CLD04_16330 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG CLD04_16330 IPR011701 Major facilitator superfamily CLD04_16330 IPR036259 MFS transporter superfamily CLD04_16335 IPR001460 Penicillin-binding protein, transpeptidase CLD04_16335 IPR036950 Penicillin binding protein transglycosylase domain CLD04_16335 IPR023346 Lysozyme-like domain superfamily CLD04_16335 IPR001264 Glycosyl transferase, family 51 CLD04_16335 IPR012338 Beta-lactamase/transpeptidase-like CLD04_16340 IPR007263 Protein of unknown function DUF393 CLD04_16345 IPR035289 Protein of unknown function DUF5366 CLD04_16350 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_16350 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_16350 IPR029151 Periplasmic sensor-like domain superfamily CLD04_16350 IPR000014 PAS domain CLD04_16350 IPR013767 PAS fold CLD04_16350 IPR039506 SpoOB, alpha-helical domain CLD04_16350 IPR016120 Signal transduction histidine kinase, sporulation regulator SpoOB CLD04_16350 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLD04_16350 IPR033463 Single cache domain 3 CLD04_16350 IPR005467 Histidine kinase domain CLD04_16355 IPR011006 CheY-like superfamily CLD04_16355 IPR024187 Signal transduction response regulator, citrate/malate metabolism CLD04_16355 IPR001789 Signal transduction response regulator, receiver domain CLD04_16380 IPR004679 2-hydroxycarboxylate transporter CLD04_16380 IPR018025 2-hydroxycarboxylate transporter, Proteobacteria/Firmicutes CLD04_16390 IPR018393 NADH-plastoquinone oxidoreductase, chain 5 subgroup CLD04_16390 IPR005663 Monovalent cation proton antiporter subunit A CLD04_16390 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit CLD04_16390 IPR025383 Domain of unknown function DUF4040 CLD04_16390 IPR001516 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminal CLD04_16395 IPR007182 Na+/H+ antiporter MnhB subunit-related protein CLD04_16395 IPR005281 Monovalent cation:proton antiporter, subunit B CLD04_16400 IPR039428 NADH-ubiquinone oxidoreductase chain 4L/Mnh complex subunit C1-like CLD04_16405 IPR001750 NADH:quinone oxidoreductase/Mrp antiporter, membrane subunit CLD04_16405 IPR003918 NADH:ubiquinone oxidoreductase CLD04_16405 IPR004775 Na(+)/H(+) antiporter subunit D1 CLD04_16410 IPR002758 Na+/H+ antiporter subunit E CLD04_16415 IPR007208 Na(+)/H(+) antiporter subunit F-like CLD04_16420 IPR005133 Na+/H+ antiporter subunit G CLD04_16425 IPR006683 Thioesterase domain CLD04_16425 IPR029069 HotDog domain superfamily CLD04_16425 IPR003736 Phenylacetic acid degradation-related domain CLD04_16430 IPR001789 Signal transduction response regulator, receiver domain CLD04_16430 IPR000792 Transcription regulator LuxR, C-terminal CLD04_16430 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_16430 IPR016032 Signal transduction response regulator, C-terminal effector CLD04_16430 IPR011006 CheY-like superfamily CLD04_16445 IPR033965 Competence Regulatory Protein ComQ CLD04_16445 IPR008949 Isoprenoid synthase domain superfamily CLD04_16445 IPR000092 Polyprenyl synthetase CLD04_16450 IPR012554 Degradation enzyme regulation protein DegQ CLD04_16455 IPR016559 Uncharacterised conserved protein UCP009597 CLD04_16460 IPR013976 Metal-dependent hydrolase HDOD CLD04_16460 IPR035919 EAL domain superfamily CLD04_16460 IPR001633 EAL domain CLD04_16460 IPR014408 Signal transduction c-di-GMP phosphodiesterase, EAL/HD-GYP domain-containing CLD04_16465 IPR041525 Nicotinate/nicotinamide phosphoribosyltransferase CLD04_16465 IPR007229 Nicotinate phosphoribosyltransferase family CLD04_16465 IPR006405 Nicotinate phosphoribosyltransferase pncB-type CLD04_16465 IPR036068 Nicotinate phosphoribosyltransferase-like, C-terminal CLD04_16465 IPR041619 Nicotinate phosphoribosyltransferase C-terminal domain CLD04_16465 IPR013785 Aldolase-type TIM barrel CLD04_16465 IPR040727 Nicotinate phosphoribosyltransferase, N-terminal domain CLD04_16470 IPR000868 Isochorismatase-like CLD04_16470 IPR036380 Isochorismatase-like superfamily CLD04_16475 IPR012543 Protein of unknown function DUF1694 CLD04_16475 IPR029064 50S ribosomal protein L30e-like CLD04_16480 IPR020260 Uncharacterised protein family YueH CLD04_16485 IPR019618 Spore germination protein GerPA/GerPF CLD04_16490 IPR002549 Transmembrane protein TqsA-like CLD04_16495 IPR019270 Protein of unknown function DUF2283 CLD04_16495 IPR016789 Uncharacterised conserved protein UCP021389 CLD04_16505 IPR003607 HD/PDEase domain CLD04_16505 IPR006674 HD domain CLD04_16505 IPR006675 HDIG domain CLD04_16510 IPR002347 Short-chain dehydrogenase/reductase SDR CLD04_16510 IPR020904 Short-chain dehydrogenase/reductase, conserved site CLD04_16510 IPR036291 NAD(P)-binding domain superfamily CLD04_16515 IPR018920 ESAT-6 secretion machinery protein EssA/YueC CLD04_16515 IPR020212 ESX secretion system protein YueC CLD04_16520 IPR023838 Type VII secretion system EsaA CLD04_16525 IPR022206 Firmicutes EssC, N-terminal CLD04_16525 IPR023839 Firmicutes EssC, C-terminal CLD04_16525 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_16525 IPR002543 FtsK domain CLD04_16530 IPR018778 Type VII secretion system EssB CLD04_16535 IPR029071 Ubiquitin-like domain superfamily CLD04_16535 IPR024962 YukD-like CLD04_16535 IPR014921 EsaB CLD04_16540 IPR010310 Type VII secretion system ESAT-6-like CLD04_16540 IPR036689 ESAT-6-like superfamily CLD04_16550 IPR041522 CdaR, GGDEF-like domain CLD04_16550 IPR010312 GTP-sensing transcriptional pleiotropic repressor CodY, N-terminal CLD04_16550 IPR029016 GAF-like domain superfamily CLD04_16550 IPR025736 PucR C-terminal helix-turn-helix domain CLD04_16550 IPR042070 PucR C-terminal helix-turn-helix domain superfamily CLD04_16555 IPR008141 Alanine dehydrogenase CLD04_16555 IPR008143 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, conserved site-2 CLD04_16555 IPR007886 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, N-terminal CLD04_16555 IPR008142 Alanine dehydrogenase/NAD(P) transhydrogenase, conserved site-1 CLD04_16555 IPR007698 Alanine dehydrogenase/pyridine nucleotide transhydrogenase, NAD(H)-binding domain CLD04_16555 IPR036291 NAD(P)-binding domain superfamily CLD04_16560 IPR019268 Protein of unknown function DUF2278 CLD04_16565 IPR037407 MbtH-like protein CLD04_16565 IPR038020 MbtH-like domain superfamily CLD04_16565 IPR005153 MbtH-like domain CLD04_16570 IPR023213 Chloramphenicol acetyltransferase-like domain superfamily CLD04_16570 IPR001031 Thioesterase CLD04_16570 IPR009081 Phosphopantetheine binding ACP domain CLD04_16570 IPR020802 Polyketide synthase, thioesterase domain CLD04_16570 IPR020806 Polyketide synthase, phosphopantetheine-binding domain CLD04_16570 IPR001242 Condensation domain CLD04_16570 IPR010071 Amino acid adenylation domain CLD04_16570 IPR042099 AMP-dependent synthetase-like superfamily CLD04_16570 IPR020845 AMP-binding, conserved site CLD04_16570 IPR025110 AMP-binding enzyme, C-terminal domain CLD04_16570 IPR036736 ACP-like superfamily CLD04_16570 IPR029058 Alpha/Beta hydrolase fold CLD04_16570 IPR000873 AMP-dependent synthetase/ligase CLD04_16575 IPR009081 Phosphopantetheine binding ACP domain CLD04_16575 IPR036380 Isochorismatase-like superfamily CLD04_16575 IPR000868 Isochorismatase-like CLD04_16575 IPR016291 Isochorismatase CLD04_16575 IPR036736 ACP-like superfamily CLD04_16580 IPR011963 2,3-dihydroxybenzoate-AMP ligase CLD04_16580 IPR000873 AMP-dependent synthetase/ligase CLD04_16580 IPR020845 AMP-binding, conserved site CLD04_16580 IPR025110 AMP-binding enzyme, C-terminal domain CLD04_16585 IPR005801 ADC synthase CLD04_16585 IPR004561 Isochorismate synthase CLD04_16585 IPR015890 Chorismate-utilising enzyme, C-terminal CLD04_16590 IPR003560 2,3-dihydro-2,3-dihydroxybenzoate dehydrogenase CLD04_16590 IPR036291 NAD(P)-binding domain superfamily CLD04_16590 IPR002347 Short-chain dehydrogenase/reductase SDR CLD04_16590 IPR020904 Short-chain dehydrogenase/reductase, conserved site CLD04_16595 IPR029058 Alpha/Beta hydrolase fold CLD04_16595 IPR000801 Putative esterase CLD04_16600 IPR036374 Oxidoreductase, molybdopterin-binding domain superfamily CLD04_16600 IPR000572 Oxidoreductase, molybdopterin-binding domain CLD04_16605 IPR003784 BioY protein CLD04_16610 IPR032813 Putative Na+/H+ antiporter, N-terminal CLD04_16610 IPR018461 Na+/H+ antiporter, NhaC-like, C-terminal CLD04_16615 IPR011356 Peptidase M17, leucine aminopeptidase/peptidase B CLD04_16615 IPR000819 Peptidase M17, leucyl aminopeptidase, C-terminal CLD04_16615 IPR023042 Peptidase M17, leucine aminopeptidase CLD04_16615 IPR008283 Peptidase M17, leucyl aminopeptidase, N-terminal CLD04_16620 IPR003832 Protein of unknown function DUF212 CLD04_16625 IPR036908 RlpA-like domain superfamily CLD04_16625 IPR010611 3D domain CLD04_16630 IPR025917 Putative membrane protein YuiB CLD04_16635 IPR035272 Protein of unknown function DUF5351 CLD04_16635 IPR036410 Heat shock protein DnaJ, cysteine-rich domain superfamily CLD04_16640 IPR023753 FAD/NAD(P)-binding domain CLD04_16640 IPR036188 FAD/NAD(P)-binding domain superfamily CLD04_16645 IPR036188 FAD/NAD(P)-binding domain superfamily CLD04_16645 IPR023753 FAD/NAD(P)-binding domain CLD04_16645 IPR022890 Ferredoxin--NADP reductase, type 2 CLD04_16655 IPR005994 Guanosine monophosphate reductase, type2 CLD04_16655 IPR015875 IMP dehydrogenase / GMP reductase, conserved site CLD04_16655 IPR001093 IMP dehydrogenase/GMP reductase CLD04_16655 IPR013785 Aldolase-type TIM barrel CLD04_16660 IPR007396 Transcriptional regulator PAI 2-type CLD04_16660 IPR012349 FMN-binding split barrel CLD04_16665 IPR016181 Acyl-CoA N-acyltransferase CLD04_16665 IPR000182 GNAT domain CLD04_16670 IPR000361 FeS cluster biogenesis CLD04_16670 IPR017870 FeS cluster insertion, C-terminal, conserved site CLD04_16670 IPR016092 FeS cluster insertion protein CLD04_16670 IPR035903 HesB-like domain superfamily CLD04_16675 IPR001653 Diaminopimelate epimerase, DapF CLD04_16675 IPR018510 Diaminopimelate epimerase, active site CLD04_16680 IPR008276 Concentrative nucleoside transporter CLD04_16680 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial CLD04_16680 IPR002668 Concentrative nucleoside transporter N-terminal domain CLD04_16680 IPR011657 Concentrative nucleoside transporter C-terminal domain CLD04_16685 IPR009910 Protein of unknown function DUF1450 CLD04_16685 IPR022916 Protein of unknown function UPF0349 CLD04_16690 IPR023753 FAD/NAD(P)-binding domain CLD04_16690 IPR036188 FAD/NAD(P)-binding domain superfamily CLD04_16695 IPR036249 Thioredoxin-like superfamily CLD04_16695 IPR038218 YuzD-like superfamily CLD04_16695 IPR009190 Protein of unknown function DUF1462 CLD04_16700 IPR001075 NIF system FeS cluster assembly, NifU, C-terminal CLD04_16700 IPR034904 Fe-S cluster assembly domain superfamily CLD04_16705 IPR029058 Alpha/Beta hydrolase fold CLD04_16705 IPR011042 Six-bladed beta-propeller, TolB-like CLD04_16705 IPR001375 Peptidase S9, prolyl oligopeptidase, catalytic domain CLD04_16705 IPR011659 WD40-like Beta Propeller CLD04_16710 IPR000870 Homoserine kinase CLD04_16710 IPR006204 GHMP kinase N-terminal domain CLD04_16710 IPR036554 GHMP kinase, C-terminal domain superfamily CLD04_16710 IPR013750 GHMP kinase, C-terminal domain CLD04_16710 IPR020568 Ribosomal protein S5 domain 2-type fold CLD04_16710 IPR006203 GHMP kinase, ATP-binding, conserved site CLD04_16710 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLD04_16715 IPR036052 Tryptophan synthase beta subunit-like PLP-dependent enzyme CLD04_16715 IPR026260 Threonine synthase, bacterial/archaeal CLD04_16715 IPR004450 Threonine synthase-like CLD04_16715 IPR001926 Pyridoxal-phosphate dependent enzyme CLD04_16715 IPR000634 Serine/threonine dehydratase, pyridoxal-phosphate-binding site CLD04_16720 IPR001342 Homoserine dehydrogenase, catalytic CLD04_16720 IPR005106 Aspartate/homoserine dehydrogenase, NAD-binding CLD04_16720 IPR036291 NAD(P)-binding domain superfamily CLD04_16720 IPR016204 Homoserine dehydrogenase CLD04_16720 IPR019811 Homoserine dehydrogenase, conserved site CLD04_16720 IPR002912 ACT domain CLD04_16725 IPR011009 Protein kinase-like domain superfamily CLD04_16725 IPR014254 Spore coat protein YutH CLD04_16730 IPR026038 Putative phosphatidylglycerophosphatase CLD04_16730 IPR007686 YutG/PgpA domain CLD04_16730 IPR036681 PgpA-like superfamily CLD04_16735 IPR036412 HAD-like superfamily CLD04_16735 IPR006357 HAD-superfamily hydrolase, subfamily IIA CLD04_16735 IPR006354 HAD-superfamily hydrolase, subfamily IIA, hypothetical 1 CLD04_16735 IPR023214 HAD superfamily CLD04_16740 IPR037038 Bsu32300-like superfamily CLD04_16740 IPR008201 Protein of unknown function DUF86 CLD04_16745 IPR038141 YutD-like superfamily CLD04_16745 IPR009370 Protein of unknown function DUF1027 CLD04_16750 IPR019076 Sporulation lipoprotein YhcN/YlaJ-like CLD04_16755 IPR031691 Lipoyl synthase, N-terminal CLD04_16755 IPR006638 Elp3/MiaB/NifB CLD04_16755 IPR007197 Radical SAM CLD04_16755 IPR013785 Aldolase-type TIM barrel CLD04_16755 IPR003698 Lipoyl synthase CLD04_16760 IPR011055 Duplicated hybrid motif CLD04_16760 IPR016047 Peptidase M23 CLD04_16765 IPR014197 Sporulation protein YunB CLD04_16770 IPR014931 Protein of unknown function DUF1805 CLD04_16770 IPR036493 Hypothetical protein YunC superfamily CLD04_16775 IPR011240 Phosphoesterase-related protein YunD CLD04_16775 IPR029052 Metallo-dependent phosphatase-like CLD04_16775 IPR008334 5'-Nucleotidase, C-terminal CLD04_16775 IPR036907 5'-Nucleotidase, C-terminal domain superfamily CLD04_16775 IPR006179 5'-Nucleotidase/apyrase CLD04_16780 IPR002781 Transmembrane protein TauE-like CLD04_16785 IPR002763 Protein of unknown function DUF72 CLD04_16785 IPR036520 UPF0759 superfamily CLD04_16795 IPR017593 Allantoinase CLD04_16795 IPR006680 Amidohydrolase-related CLD04_16795 IPR011059 Metal-dependent hydrolase, composite domain superfamily CLD04_16795 IPR032466 Metal-dependent hydrolase CLD04_16800 IPR042070 PucR C-terminal helix-turn-helix domain superfamily CLD04_16800 IPR041522 CdaR, GGDEF-like domain CLD04_16800 IPR012914 Purine catabolism PurC-like domain CLD04_16800 IPR025736 PucR C-terminal helix-turn-helix domain CLD04_16805 IPR006043 Xanthine/uracil/vitamin C permease CLD04_16805 IPR006042 Xanthine/uracil permease CLD04_16805 IPR017588 Uric acid permease UacT-like CLD04_16810 IPR006043 Xanthine/uracil/vitamin C permease CLD04_16810 IPR006042 Xanthine/uracil permease CLD04_16810 IPR017588 Uric acid permease UacT-like CLD04_16815 IPR017580 2-oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase, type 1 CLD04_16815 IPR018020 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase CLD04_16815 IPR002042 Uricase CLD04_16815 IPR019842 Uricase, conserved site CLD04_16815 IPR036778 Oxo-4-hydroxy-4-carboxy-5-ureidoimidazoline decarboxylase superfamily CLD04_16820 IPR036817 Transthyretin/hydroxyisourate hydrolase domain superfamily CLD04_16820 IPR000895 Transthyretin/hydroxyisourate hydrolase CLD04_16820 IPR023419 Transthyretin, conserved site CLD04_16820 IPR023416 Transthyretin/hydroxyisourate hydrolase domain CLD04_16820 IPR023418 Transthyretin, thyroxine binding site CLD04_16820 IPR014306 Hydroxyisourate hydrolase CLD04_16825 IPR010070 Sporulation protein YjcZ-like CLD04_16830 IPR017611 Xanthine dehydrogenase E subunit CLD04_16830 IPR006058 2Fe-2S ferredoxin, iron-sulphur binding site CLD04_16830 IPR012675 Beta-grasp domain superfamily CLD04_16830 IPR002888 [2Fe-2S]-binding CLD04_16830 IPR001041 2Fe-2S ferredoxin-type iron-sulfur binding domain CLD04_16830 IPR036884 [2Fe-2S]-binding domain superfamily CLD04_16830 IPR036010 2Fe-2S ferredoxin-like superfamily CLD04_16835 IPR036856 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead superfamily CLD04_16835 IPR000674 Aldehyde oxidase/xanthine dehydrogenase, a/b hammerhead CLD04_16835 IPR037165 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding domain superfamily CLD04_16835 IPR008274 Aldehyde oxidase/xanthine dehydrogenase, molybdopterin binding CLD04_16835 IPR017609 Xanthine dehydrogenase D subunit CLD04_16840 IPR036683 CO dehydrogenase flavoprotein, C-terminal domain superfamily CLD04_16840 IPR016166 FAD-binding domain, PCMH-type CLD04_16840 IPR002346 Molybdopterin dehydrogenase, FAD-binding CLD04_16840 IPR017612 Xanthine dehydrogenase C subunit CLD04_16840 IPR016169 FAD-binding, type PCMH, subdomain 2 CLD04_16840 IPR036318 FAD-binding, type PCMH-like superfamily CLD04_16845 IPR025877 MobA-like NTP transferase CLD04_16845 IPR017615 Xanthine dehydrogenase, accessory protein PucB CLD04_16845 IPR029044 Nucleotide-diphospho-sugar transferases CLD04_16850 IPR027051 XdhC Rossmann domain CLD04_16850 IPR003777 XdhC- CoxI CLD04_16855 IPR000192 Aminotransferase class V domain CLD04_16855 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_16855 IPR024169 Serine-pyruvate aminotransferase/2-aminoethylphosphonate-pyruvate transaminase CLD04_16855 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site CLD04_16855 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_16855 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_16860 IPR010158 Amidase, carbamoylase-type CLD04_16860 IPR036264 Bacterial exopeptidase dimerisation domain CLD04_16860 IPR002933 Peptidase M20 CLD04_16865 IPR007346 Endonuclease I CLD04_16880 IPR000524 Transcription regulator HTH, GntR CLD04_16880 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_16880 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_16880 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_16880 IPR004839 Aminotransferase, class I/classII CLD04_16880 IPR036390 Winged helix DNA-binding domain superfamily CLD04_16880 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_16890 IPR033714 Phenylalanly tRNA synthetase, tRNA-binding-domain CLD04_16890 IPR002547 tRNA-binding domain CLD04_16890 IPR012340 Nucleic acid-binding, OB-fold CLD04_16890 IPR005121 Ferrodoxin-fold anticodon-binding domain CLD04_16890 IPR041616 Phenylalanyl tRNA synthetase beta chain, core domain CLD04_16890 IPR005146 B3/B4 tRNA-binding domain CLD04_16890 IPR020825 Phenylalanyl-tRNA synthetase, B3/B4 CLD04_16890 IPR009061 Putative DNA-binding domain superfamily CLD04_16890 IPR004532 Phenylalanine-tRNA ligase, class IIc, beta subunit CLD04_16890 IPR005147 tRNA synthetase, B5-domain CLD04_16890 IPR036690 Ferrodoxin-fold anticodon-binding domain superfamily CLD04_16895 IPR000277 Cys/Met metabolism, pyridoxal phosphate-dependent enzyme CLD04_16895 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_16895 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_16895 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_16895 IPR006237 L-methionine gamma-lyase CLD04_16905 IPR040582 MalK, OB fold domain CLD04_16905 IPR008995 Molybdate/tungstate binding, C-terminal CLD04_16905 IPR017871 ABC transporter, conserved site CLD04_16905 IPR003439 ABC transporter-like CLD04_16905 IPR003593 AAA+ ATPase domain CLD04_16905 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_16905 IPR005116 Transport-associated OB, type 1 CLD04_16910 IPR000524 Transcription regulator HTH, GntR CLD04_16910 IPR036390 Winged helix DNA-binding domain superfamily CLD04_16910 IPR011663 UbiC transcription regulator-associated CLD04_16910 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily CLD04_16910 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_16925 IPR006059 Bacterial extracellular solute-binding protein CLD04_16930 IPR001347 Sugar isomerase (SIS) CLD04_16930 IPR035490 GlmS/FrlB, SIS domain 2 CLD04_16930 IPR024713 Fructosamine deglycase FrlB CLD04_16930 IPR035488 Fructosamine deglycase FrlB, SIS domain 1 CLD04_16935 IPR000305 GIY-YIG endonuclease CLD04_16935 IPR035901 GIY-YIG endonuclease superfamily CLD04_16935 IPR014527 Excinuclease GIY-YIG catalytic domain-containing uncharacterised conserved protein CLD04_16940 IPR036188 FAD/NAD(P)-binding domain superfamily CLD04_16940 IPR006076 FAD dependent oxidoreductase CLD04_16960 IPR000825 SUF system FeS cluster assembly, SufBD CLD04_16960 IPR037284 SUF system FeS cluster assembly, SufBD superfamily CLD04_16960 IPR010231 SUF system FeS cluster assembly, SufB CLD04_16965 IPR002871 NIF system FeS cluster assembly, NifU, N-terminal CLD04_16970 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_16970 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_16970 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_16970 IPR016454 Cysteine desulfurase CLD04_16970 IPR020578 Aminotransferase class-V, pyridoxal-phosphate binding site CLD04_16970 IPR000192 Aminotransferase class V domain CLD04_16970 IPR010970 Cysteine desulfurase, SufS CLD04_16975 IPR000825 SUF system FeS cluster assembly, SufBD CLD04_16975 IPR037284 SUF system FeS cluster assembly, SufBD superfamily CLD04_16975 IPR011542 SUF system FeS cluster assembly, SufD CLD04_16980 IPR010230 FeS cluster assembly SUF system, ATPase SufC CLD04_16980 IPR003593 AAA+ ATPase domain CLD04_16980 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_16980 IPR017871 ABC transporter, conserved site CLD04_16980 IPR003439 ABC transporter-like CLD04_16995 IPR003779 Carboxymuconolactone decarboxylase-like CLD04_16995 IPR029032 AhpD-like CLD04_17000 IPR004872 Lipoprotein NlpA family CLD04_17005 IPR035906 MetI-like superfamily CLD04_17005 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_17010 IPR003593 AAA+ ATPase domain CLD04_17010 IPR018449 NIL domain CLD04_17010 IPR041701 Methionine import ATP-binding protein MetN, ATP-binding cassette domain CLD04_17010 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_17010 IPR017871 ABC transporter, conserved site CLD04_17010 IPR003439 ABC transporter-like CLD04_17010 IPR017908 ABC transporter, methionine import, ATP-binding protein, MetN, C-terminal CLD04_17015 IPR003033 SCP2 sterol-binding domain CLD04_17015 IPR036527 SCP2 sterol-binding domain superfamily CLD04_17020 IPR036249 Thioredoxin-like superfamily CLD04_17020 IPR013766 Thioredoxin domain CLD04_17025 IPR034141 Ribonuclease M5-like, TOPRIM domain CLD04_17025 IPR006171 TOPRIM domain CLD04_17030 IPR020140 Uncharacterised protein family YusG CLD04_17035 IPR000089 Biotin/lipoyl attachment CLD04_17035 IPR033753 Glycine cleavage system H-protein/Simiate CLD04_17035 IPR002930 Glycine cleavage system H-protein CLD04_17035 IPR003016 2-oxo acid dehydrogenase, lipoyl-binding site CLD04_17035 IPR017453 Glycine cleavage system H-protein, subgroup CLD04_17035 IPR011053 Single hybrid motif CLD04_17040 IPR036249 Thioredoxin-like superfamily CLD04_17040 IPR006504 Transcriptional regulator Spx/MgsR CLD04_17040 IPR006660 Arsenate reductase-like CLD04_17045 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily CLD04_17045 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily CLD04_17045 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal CLD04_17045 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal CLD04_17045 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal CLD04_17045 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain CLD04_17045 IPR006089 Acyl-CoA dehydrogenase, conserved site CLD04_17050 IPR016039 Thiolase-like CLD04_17050 IPR002155 Thiolase CLD04_17050 IPR020615 Thiolase, acyl-enzyme intermediate active site CLD04_17050 IPR020617 Thiolase, C-terminal CLD04_17050 IPR020613 Thiolase, conserved site CLD04_17050 IPR020610 Thiolase, active site CLD04_17050 IPR020616 Thiolase, N-terminal CLD04_17055 IPR036291 NAD(P)-binding domain superfamily CLD04_17055 IPR001753 Enoyl-CoA hydratase/isomerase CLD04_17055 IPR029045 ClpP/crotonase-like domain superfamily CLD04_17055 IPR013328 6-phosphogluconate dehydrogenase, domain 2 CLD04_17055 IPR006108 3-hydroxyacyl-CoA dehydrogenase, C-terminal CLD04_17055 IPR006176 3-hydroxyacyl-CoA dehydrogenase, NAD binding CLD04_17055 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CLD04_17060 IPR025625 YuzL-like protein CLD04_17065 IPR015659 Proline oxidase family CLD04_17065 IPR002872 Proline dehydrogenase domain CLD04_17065 IPR008219 Proline dehydrogenase, bacteria and archaea CLD04_17065 IPR029041 FAD-linked oxidoreductase-like CLD04_17075 IPR012851 Spore coat protein CotF-like CLD04_17080 IPR036390 Winged helix DNA-binding domain superfamily CLD04_17080 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_17080 IPR000835 MarR-type HTH domain CLD04_17085 IPR005829 Sugar transporter, conserved site CLD04_17085 IPR020846 Major facilitator superfamily domain CLD04_17085 IPR036259 MFS transporter superfamily CLD04_17085 IPR011701 Major facilitator superfamily CLD04_17085 IPR004638 Drug resistance transporter EmrB-like CLD04_17090 IPR014347 Tautomerase/MIF superfamily CLD04_17090 IPR037479 Tautomerase, MSAD family CLD04_17095 IPR036291 NAD(P)-binding domain superfamily CLD04_17095 IPR002347 Short-chain dehydrogenase/reductase SDR CLD04_17095 IPR020904 Short-chain dehydrogenase/reductase, conserved site CLD04_17100 IPR036390 Winged helix DNA-binding domain superfamily CLD04_17100 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_17100 IPR000847 Transcription regulator HTH, LysR CLD04_17100 IPR005119 LysR, substrate-binding CLD04_17105 IPR020393 Uncharacterised protein family YusU CLD04_17110 IPR003593 AAA+ ATPase domain CLD04_17110 IPR003439 ABC transporter-like CLD04_17110 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_17110 IPR017871 ABC transporter, conserved site CLD04_17115 IPR025623 YusW-like protein CLD04_17125 IPR002347 Short-chain dehydrogenase/reductase SDR CLD04_17125 IPR020904 Short-chain dehydrogenase/reductase, conserved site CLD04_17125 IPR036291 NAD(P)-binding domain superfamily CLD04_17130 IPR008331 Ferritin/DPS protein domain CLD04_17130 IPR009078 Ferritin-like superfamily CLD04_17130 IPR012347 Ferritin-like CLD04_17130 IPR023188 DNA-binding protein Dps, conserved site CLD04_17130 IPR002177 DNA-binding protein Dps CLD04_17135 IPR001478 PDZ domain CLD04_17135 IPR036034 PDZ superfamily CLD04_17135 IPR009003 Peptidase S1, PA clan CLD04_17135 IPR001940 Peptidase S1C CLD04_17140 IPR011006 CheY-like superfamily CLD04_17140 IPR016032 Signal transduction response regulator, C-terminal effector CLD04_17140 IPR001789 Signal transduction response regulator, receiver domain CLD04_17140 IPR039420 Transcriptional regulatory protein WalR-like CLD04_17140 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_17140 IPR001867 OmpR/PhoB-type DNA-binding domain CLD04_17145 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLD04_17145 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLD04_17145 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLD04_17145 IPR005467 Histidine kinase domain CLD04_17145 IPR003660 HAMP domain CLD04_17145 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_17145 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_17155 IPR001647 DNA-binding HTH domain, TetR-type CLD04_17155 IPR009057 Homeobox-like domain superfamily CLD04_17155 IPR023772 DNA-binding HTH domain, TetR-type, conserved site CLD04_17160 IPR018951 Fumarase C, C-terminal CLD04_17160 IPR022761 Fumarate lyase, N-terminal CLD04_17160 IPR000362 Fumarate lyase family CLD04_17160 IPR020557 Fumarate lyase, conserved site CLD04_17160 IPR024083 Fumarase/histidase, N-terminal CLD04_17160 IPR005677 Fumarate hydratase, class II CLD04_17160 IPR008948 L-Aspartase-like CLD04_17165 IPR025088 Protein of unknown function DUF3970 CLD04_17170 IPR004995 Bacillus/Clostridium Ger spore germination protein CLD04_17175 IPR004761 Spore germination GerAB CLD04_17180 IPR008844 Spore germination GerAC CLD04_17180 IPR038501 Spore germination GerAC superfamily CLD04_17185 IPR000792 Transcription regulator LuxR, C-terminal CLD04_17185 IPR001789 Signal transduction response regulator, receiver domain CLD04_17185 IPR016032 Signal transduction response regulator, C-terminal effector CLD04_17185 IPR011006 CheY-like superfamily CLD04_17190 IPR003660 HAMP domain CLD04_17190 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_17190 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_17190 IPR005467 Histidine kinase domain CLD04_17190 IPR017202 Sensor histidine kinase LiaS/VraS CLD04_17190 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain CLD04_17195 IPR024425 Cell wall-active antibiotics response 4TMS YvqF CLD04_17195 IPR016975 Cell wall-active antibiotic response protein CLD04_17200 IPR025164 Putative adhesin CLD04_17205 IPR007157 PspA/IM30 CLD04_17215 IPR011701 Major facilitator superfamily CLD04_17215 IPR036259 MFS transporter superfamily CLD04_17220 IPR016030 Cobalamin adenosyltransferase-like CLD04_17220 IPR036451 Cobalamin adenosyltransferase-like superfamily CLD04_17220 IPR029499 ATP:cob(I)alamin adenosyltransferase, PduO-type CLD04_17225 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_17225 IPR003439 ABC transporter-like CLD04_17225 IPR003593 AAA+ ATPase domain CLD04_17230 IPR000522 ABC transporter, permease protein, BtuC-like CLD04_17230 IPR037294 ABC transporter, BtuC-like CLD04_17235 IPR002491 ABC transporter periplasmic binding domain CLD04_17240 IPR036291 NAD(P)-binding domain superfamily CLD04_17240 IPR002347 Short-chain dehydrogenase/reductase SDR CLD04_17240 IPR020904 Short-chain dehydrogenase/reductase, conserved site CLD04_17245 IPR005511 Senescence marker protein-30 (SMP-30) CLD04_17245 IPR013658 SMP-30/Gluconolactonase/LRE-like region CLD04_17245 IPR011042 Six-bladed beta-propeller, TolB-like CLD04_17250 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLD04_17250 IPR005467 Histidine kinase domain CLD04_17250 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLD04_17250 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_17250 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLD04_17250 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_17255 IPR011006 CheY-like superfamily CLD04_17255 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_17255 IPR039420 Transcriptional regulatory protein WalR-like CLD04_17255 IPR001789 Signal transduction response regulator, receiver domain CLD04_17255 IPR016032 Signal transduction response regulator, C-terminal effector CLD04_17255 IPR001867 OmpR/PhoB-type DNA-binding domain CLD04_17265 IPR013324 RNA polymerase sigma factor, region 3/4-like CLD04_17265 IPR014284 RNA polymerase sigma-70 like domain CLD04_17265 IPR007630 RNA polymerase sigma-70 region 4 CLD04_17270 IPR024419 Protein of unknown function YvrJ CLD04_17275 IPR017774 Bicupin, oxalate decarboxylase/oxidase CLD04_17275 IPR006045 Cupin 1 CLD04_17275 IPR014710 RmlC-like jelly roll fold CLD04_17275 IPR011051 RmlC-like cupin domain superfamily CLD04_17280 IPR025912 Regulatory protein YrvL CLD04_17285 IPR025857 MacB-like periplasmic core domain CLD04_17285 IPR003838 ABC transporter permease protein domain CLD04_17290 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_17290 IPR017871 ABC transporter, conserved site CLD04_17290 IPR003593 AAA+ ATPase domain CLD04_17290 IPR003439 ABC transporter-like CLD04_17295 IPR032317 RND efflux pump, membrane fusion protein, barrel-sandwich domain CLD04_17300 IPR003439 ABC transporter-like CLD04_17300 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_17300 IPR017871 ABC transporter, conserved site CLD04_17300 IPR003593 AAA+ ATPase domain CLD04_17305 IPR037294 ABC transporter, BtuC-like CLD04_17305 IPR000522 ABC transporter, permease protein, BtuC-like CLD04_17310 IPR037294 ABC transporter, BtuC-like CLD04_17310 IPR000522 ABC transporter, permease protein, BtuC-like CLD04_17315 IPR002491 ABC transporter periplasmic binding domain CLD04_17325 IPR002293 Amino acid/polyamine transporter I CLD04_17335 IPR014220 Small acid-soluble spore protein, SspJ CLD04_17340 IPR007404 LexA-binding, inner membrane-associated putative hydrolase CLD04_17345 IPR012160 Lipoteichoic acid synthase-like CLD04_17345 IPR000917 Sulfatase, N-terminal CLD04_17345 IPR017850 Alkaline-phosphatase-like, core domain superfamily CLD04_17350 IPR010093 SinI-like, DNA-binding domain CLD04_17350 IPR041657 Helix-turn-helix domain, group 17 CLD04_17350 IPR009061 Putative DNA-binding domain superfamily CLD04_17350 IPR024370 PBP domain CLD04_17355 IPR005950 Molybdate ABC transporter, substrate-binding protein CLD04_17355 IPR041879 YvgL-like, substrate binding domain CLD04_17360 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_17360 IPR011867 Molybdate ABC transporter, permease protein CLD04_17360 IPR035906 MetI-like superfamily CLD04_17365 IPR018170 Aldo/keto reductase, conserved site CLD04_17365 IPR020471 Aldo/keto reductase CLD04_17365 IPR023210 NADP-dependent oxidoreductase domain CLD04_17365 IPR036812 NADP-dependent oxidoreductase domain superfamily CLD04_17375 IPR018422 Cation/H+ exchanger, CPA1 family CLD04_17375 IPR004705 Cation/H+ exchanger, CPA1 family, bacteria CLD04_17375 IPR006153 Cation/H+ exchanger CLD04_17380 IPR006066 Nitrite/sulphite reductase iron-sulphur/sirohaem-binding site CLD04_17380 IPR006067 Nitrite/sulphite reductase 4Fe-4S domain CLD04_17380 IPR036136 Nitrite/Sulfite reductase ferredoxin-like domain superfamily CLD04_17380 IPR005117 Nitrite/Sulfite reductase ferredoxin-like domain CLD04_17380 IPR011786 Sulphite reductase (NADPH) hemoprotein, beta subunit CLD04_17385 IPR010199 Sulphite reductase [NADPH] flavoprotein, alpha chain CLD04_17385 IPR001709 Flavoprotein pyridine nucleotide cytochrome reductase CLD04_17385 IPR029039 Flavoprotein-like superfamily CLD04_17385 IPR039261 Ferredoxin-NADP reductase (FNR), nucleotide-binding domain CLD04_17385 IPR023173 NADPH-cytochrome p450 reductase, FAD-binding, alpha-helical domain superfamily CLD04_17385 IPR001433 Oxidoreductase FAD/NAD(P)-binding CLD04_17385 IPR017938 Riboflavin synthase-like beta-barrel CLD04_17385 IPR003097 Sulfite reductase [NADPH] flavoprotein alpha-component-like, FAD-binding CLD04_17385 IPR001094 Flavodoxin-like CLD04_17385 IPR017927 FAD-binding domain, ferredoxin reductase-type CLD04_17385 IPR008254 Flavodoxin/nitric oxide synthase CLD04_17390 IPR014016 UvrD-like helicase, ATP-binding domain CLD04_17390 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_17390 IPR000212 DNA helicase, UvrD/REP type CLD04_17390 IPR027785 UvrD-like helicase C-terminal domain CLD04_17395 IPR005115 Uncharacterised domain UPF0126 CLD04_17400 IPR012187 Disulphide bond formation protein BdbC CLD04_17400 IPR003752 Disulphide bond formation protein DsbB/BdbC CLD04_17400 IPR023380 DsbB-like superfamily CLD04_17405 IPR036249 Thioredoxin-like superfamily CLD04_17405 IPR013766 Thioredoxin domain CLD04_17405 IPR012336 Thioredoxin-like fold CLD04_17410 IPR018303 P-type ATPase, phosphorylation site CLD04_17410 IPR023299 P-type ATPase, cytoplasmic domain N CLD04_17410 IPR001757 P-type ATPase CLD04_17410 IPR017969 Heavy-metal-associated, conserved site CLD04_17410 IPR023214 HAD superfamily CLD04_17410 IPR027256 P-type ATPase, subfamily IB CLD04_17410 IPR036412 HAD-like superfamily CLD04_17410 IPR006121 Heavy metal-associated domain, HMA CLD04_17410 IPR036163 Heavy metal-associated domain superfamily CLD04_17410 IPR008250 P-type ATPase, A domain superfamily CLD04_17410 IPR023298 P-type ATPase, transmembrane domain superfamily CLD04_17415 IPR006122 Heavy metal-associated domain, copper ion-binding CLD04_17415 IPR017969 Heavy-metal-associated, conserved site CLD04_17415 IPR023214 HAD superfamily CLD04_17415 IPR036163 Heavy metal-associated domain superfamily CLD04_17415 IPR027256 P-type ATPase, subfamily IB CLD04_17415 IPR001757 P-type ATPase CLD04_17415 IPR036412 HAD-like superfamily CLD04_17415 IPR008250 P-type ATPase, A domain superfamily CLD04_17415 IPR023298 P-type ATPase, transmembrane domain superfamily CLD04_17415 IPR018303 P-type ATPase, phosphorylation site CLD04_17415 IPR006121 Heavy metal-associated domain, HMA CLD04_17415 IPR023299 P-type ATPase, cytoplasmic domain N CLD04_17420 IPR006121 Heavy metal-associated domain, HMA CLD04_17420 IPR036163 Heavy metal-associated domain superfamily CLD04_17420 IPR017969 Heavy-metal-associated, conserved site CLD04_17420 IPR006122 Heavy metal-associated domain, copper ion-binding CLD04_17420 IPR000428 Copper ion binding protein CLD04_17425 IPR038390 Metal-sensitive transcriptional repressor superfamily CLD04_17425 IPR003735 Metal-sensitive transcriptional repressor CLD04_17430 IPR000683 Oxidoreductase, N-terminal CLD04_17430 IPR036291 NAD(P)-binding domain superfamily CLD04_17430 IPR004104 Oxidoreductase, C-terminal CLD04_17435 IPR023048 NADH-azoreductase, FMN-dependent CLD04_17435 IPR029039 Flavoprotein-like superfamily CLD04_17435 IPR003680 Flavodoxin-like fold CLD04_17445 IPR020348 Uncharacterised protein family YvaD CLD04_17450 IPR000390 Small multidrug resistance protein family CLD04_17455 IPR001647 DNA-binding HTH domain, TetR-type CLD04_17455 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CLD04_17455 IPR009057 Homeobox-like domain superfamily CLD04_17460 IPR036291 NAD(P)-binding domain superfamily CLD04_17460 IPR002347 Short-chain dehydrogenase/reductase SDR CLD04_17470 IPR020081 SsrA-binding protein, conserved site CLD04_17470 IPR000037 SsrA-binding protein CLD04_17470 IPR023620 Small protein B CLD04_17475 IPR012340 Nucleic acid-binding, OB-fold CLD04_17475 IPR011129 Cold shock domain CLD04_17475 IPR003029 S1 domain CLD04_17475 IPR022967 RNA-binding domain, S1 CLD04_17475 IPR013223 Ribonuclease B, N-terminal OB domain CLD04_17475 IPR001900 Ribonuclease II/R CLD04_17475 IPR022966 Ribonuclease II/R, conserved site CLD04_17475 IPR004476 Ribonuclease II/ribonuclease R CLD04_17475 IPR011805 Ribonuclease R CLD04_17475 IPR040476 RNase II/RNase R, cold shock domain CLD04_17480 IPR022742 Serine aminopeptidase, S33 CLD04_17480 IPR029058 Alpha/Beta hydrolase fold CLD04_17480 IPR012354 Esterase/lipase CLD04_17485 IPR004692 Preprotein translocase SecG subunit CLD04_17490 IPR029058 Alpha/Beta hydrolase fold CLD04_17490 IPR000073 Alpha/beta hydrolase fold-1 CLD04_17495 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLD04_17495 IPR001387 Cro/C1-type helix-turn-helix domain CLD04_17500 IPR001387 Cro/C1-type helix-turn-helix domain CLD04_17500 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLD04_17500 IPR016759 HTH-type transcriptional repressor RghR CLD04_17505 IPR016759 HTH-type transcriptional repressor RghR CLD04_17505 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLD04_17505 IPR001387 Cro/C1-type helix-turn-helix domain CLD04_17510 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_17510 IPR036390 Winged helix DNA-binding domain superfamily CLD04_17510 IPR002577 Helix-turn-helix, HxlR type CLD04_17515 IPR004090 Chemotaxis methyl-accepting receptor CLD04_17515 IPR003660 HAMP domain CLD04_17515 IPR004089 Methyl-accepting chemotaxis protein (MCP) signalling domain CLD04_17515 IPR024478 Chemotaxis methyl-accepting receptor HlyB-like, 4HB MCP domain CLD04_17520 IPR035906 MetI-like superfamily CLD04_17520 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_17525 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain CLD04_17530 IPR035906 MetI-like superfamily CLD04_17530 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_17535 IPR003593 AAA+ ATPase domain CLD04_17535 IPR003439 ABC transporter-like CLD04_17535 IPR017871 ABC transporter, conserved site CLD04_17535 IPR000644 CBS domain CLD04_17535 IPR005892 Glycine betaine transport ATP-binding subunit CLD04_17535 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_17540 IPR036390 Winged helix DNA-binding domain superfamily CLD04_17540 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_17540 IPR026282 DNA-binding protein, MJ1563 type CLD04_17540 IPR000835 MarR-type HTH domain CLD04_17545 IPR023902 Sporulation delaying protein SdpA CLD04_17550 IPR011020 HTTM CLD04_17550 IPR023894 Sporulation delaying protein SdpB CLD04_17550 IPR007782 Vitamin K-dependent gamma-carboxylase CLD04_17555 IPR023888 Antimicrobial peptide, SdpC family CLD04_17560 IPR026272 Immunity protein SdpI CLD04_17560 IPR012867 Domain of unknown function DUF1648 CLD04_17560 IPR025962 SdpI/YhfL protein family CLD04_17565 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_17565 IPR001845 HTH ArsR-type DNA-binding domain CLD04_17565 IPR011991 ArsR-like helix-turn-helix domain CLD04_17565 IPR036390 Winged helix DNA-binding domain superfamily CLD04_17570 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_17570 IPR035906 MetI-like superfamily CLD04_17575 IPR007210 ABC-type glycine betaine transport system, substrate-binding domain CLD04_17580 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_17580 IPR035906 MetI-like superfamily CLD04_17585 IPR000644 CBS domain CLD04_17585 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_17585 IPR003439 ABC transporter-like CLD04_17585 IPR005892 Glycine betaine transport ATP-binding subunit CLD04_17585 IPR017871 ABC transporter, conserved site CLD04_17585 IPR003593 AAA+ ATPase domain CLD04_17590 IPR000835 MarR-type HTH domain CLD04_17590 IPR036390 Winged helix DNA-binding domain superfamily CLD04_17590 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_17590 IPR026282 DNA-binding protein, MJ1563 type CLD04_17595 IPR002771 Multiple antibiotic resistance (MarC)-related CLD04_17600 IPR021722 Uncharacterised domain YvbH-like, oligomerisation domain CLD04_17600 IPR037063 Bacterial Pleckstrin homology domain superfamily CLD04_17600 IPR012544 Bacterial Pleckstrin homology domain CLD04_17610 IPR026870 Zinc-ribbon domain CLD04_17615 IPR000182 GNAT domain CLD04_17615 IPR016181 Acyl-CoA N-acyltransferase CLD04_17620 IPR000941 Enolase CLD04_17620 IPR036849 Enolase-like, C-terminal domain superfamily CLD04_17620 IPR029017 Enolase-like, N-terminal CLD04_17620 IPR020810 Enolase, C-terminal TIM barrel domain CLD04_17620 IPR020809 Enolase, conserved site CLD04_17620 IPR020811 Enolase, N-terminal CLD04_17625 IPR005995 Phosphoglycerate mutase, 2,3-bisphosphoglycerate-independent CLD04_17625 IPR006124 Metalloenzyme CLD04_17625 IPR011258 BPG-independent PGAM, N-terminal CLD04_17625 IPR017850 Alkaline-phosphatase-like, core domain superfamily CLD04_17625 IPR036646 BPG-independent phosphoglycerate mutase, domain B superfamily CLD04_17630 IPR013785 Aldolase-type TIM barrel CLD04_17630 IPR020861 Triosephosphate isomerase, active site CLD04_17630 IPR035990 Triosephosphate isomerase superfamily CLD04_17630 IPR000652 Triosephosphate isomerase CLD04_17630 IPR022896 Triosephosphate isomerase, bacterial/eukaryotic CLD04_17635 IPR015824 Phosphoglycerate kinase, N-terminal CLD04_17635 IPR015911 Phosphoglycerate kinase, conserved site CLD04_17635 IPR036043 Phosphoglycerate kinase superfamily CLD04_17635 IPR001576 Phosphoglycerate kinase CLD04_17640 IPR020829 Glyceraldehyde 3-phosphate dehydrogenase, catalytic domain CLD04_17640 IPR020828 Glyceraldehyde 3-phosphate dehydrogenase, NAD(P) binding domain CLD04_17640 IPR020831 Glyceraldehyde/Erythrose phosphate dehydrogenase family CLD04_17640 IPR036291 NAD(P)-binding domain superfamily CLD04_17640 IPR020830 Glyceraldehyde 3-phosphate dehydrogenase, active site CLD04_17640 IPR006424 Glyceraldehyde-3-phosphate dehydrogenase, type I CLD04_17645 IPR036390 Winged helix DNA-binding domain superfamily CLD04_17645 IPR007324 Sugar-binding domain, putative CLD04_17645 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_17645 IPR037171 NagB/RpiA transferase-like CLD04_17650 IPR020846 Major facilitator superfamily domain CLD04_17650 IPR003663 Sugar/inositol transporter CLD04_17650 IPR005829 Sugar transporter, conserved site CLD04_17650 IPR036259 MFS transporter superfamily CLD04_17650 IPR005828 Major facilitator, sugar transporter-like CLD04_17655 IPR000524 Transcription regulator HTH, GntR CLD04_17655 IPR036390 Winged helix DNA-binding domain superfamily CLD04_17655 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_17655 IPR033532 Arabinose metabolism transcriptional repressor, ligand-binding domain CLD04_17655 IPR028082 Periplasmic binding protein-like I CLD04_17660 IPR011251 Luciferase-like domain CLD04_17660 IPR019949 Luciferase family oxidoreductase, group 1 CLD04_17660 IPR036661 Luciferase-like domain superfamily CLD04_17670 IPR036390 Winged helix DNA-binding domain superfamily CLD04_17670 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_17670 IPR000847 Transcription regulator HTH, LysR CLD04_17670 IPR005119 LysR, substrate-binding CLD04_17675 IPR000620 EamA domain CLD04_17680 IPR004841 Amino acid permease/ SLC12A domain CLD04_17685 IPR041704 CFLE, GH18 catalytic domain CLD04_17685 IPR017853 Glycoside hydrolase superfamily CLD04_17685 IPR011583 Chitinase II CLD04_17685 IPR029070 Chitinase insertion domain superfamily CLD04_17685 IPR001223 Glycoside hydrolase family 18, catalytic domain CLD04_17690 IPR037171 NagB/RpiA transferase-like CLD04_17690 IPR022823 Lactate utilization protein C CLD04_17690 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily CLD04_17690 IPR003741 LUD domain CLD04_17695 IPR004452 4Fe-4S binding protein CLD04_17695 IPR037171 NagB/RpiA transferase-like CLD04_17695 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLD04_17695 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLD04_17695 IPR024185 5-formyltetrahydrofolate cyclo-ligase-like domain superfamily CLD04_17695 IPR009051 Alpha-helical ferredoxin CLD04_17695 IPR003741 LUD domain CLD04_17695 IPR022825 Lactate utilization protein B CLD04_17695 IPR024569 4Fe-4S binding protein, C-terminal CLD04_17700 IPR022822 Lactate utilization protein A CLD04_17700 IPR004017 Cysteine-rich domain CLD04_17730 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_17730 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_17730 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain CLD04_17735 IPR000412 ABC-2 transporter CLD04_17740 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_17740 IPR003593 AAA+ ATPase domain CLD04_17740 IPR003439 ABC transporter-like CLD04_17740 IPR017871 ABC transporter, conserved site CLD04_17745 IPR000073 Alpha/beta hydrolase fold-1 CLD04_17745 IPR029058 Alpha/Beta hydrolase fold CLD04_17750 IPR000014 PAS domain CLD04_17750 IPR035965 PAS domain superfamily CLD04_17750 IPR036457 PPM-type phosphatase domain superfamily CLD04_17750 IPR001932 PPM-type phosphatase domain CLD04_17755 IPR011683 Glycosyl hydrolase family 53 CLD04_17755 IPR017853 Glycoside hydrolase superfamily CLD04_17760 IPR013529 Glycoside hydrolase, family 42, N-terminal CLD04_17760 IPR013738 Beta-galactosidase trimerisation CLD04_17760 IPR013739 Beta-galactosidase C-terminal CLD04_17760 IPR013780 Glycosyl hydrolase, all-beta CLD04_17760 IPR017853 Glycoside hydrolase superfamily CLD04_17760 IPR029062 Class I glutamine amidotransferase-like CLD04_17760 IPR003476 Glycoside hydrolase, family 42 CLD04_17765 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_17765 IPR035906 MetI-like superfamily CLD04_17770 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_17770 IPR035906 MetI-like superfamily CLD04_17775 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein CLD04_17775 IPR006059 Bacterial extracellular solute-binding protein CLD04_17780 IPR000843 LacI-type HTH domain CLD04_17780 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLD04_17780 IPR028082 Periplasmic binding protein-like I CLD04_17785 IPR036390 Winged helix DNA-binding domain superfamily CLD04_17785 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_17785 IPR011711 GntR, C-terminal CLD04_17785 IPR008920 Transcription regulator FadR/GntR, C-terminal CLD04_17785 IPR000524 Transcription regulator HTH, GntR CLD04_17790 IPR003804 L-lactate permease CLD04_17795 IPR007634 RNA polymerase sigma factor 54, DNA-binding CLD04_17795 IPR038709 RNA polymerase sigma-54 factor, core-binding domain superfamily CLD04_17795 IPR000394 RNA polymerase sigma factor 54 CLD04_17795 IPR007046 RNA polymerase sigma factor 54, core-binding domain CLD04_17805 IPR007345 Polysaccharide pyruvyl transferase CLD04_17810 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase CLD04_17810 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_17810 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_17810 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_17815 IPR018357 Hexapeptide transferase, conserved site CLD04_17815 IPR041561 PglD, N-terminal CLD04_17815 IPR020019 Sialic acid O-acyltransferase NeuD-like CLD04_17815 IPR011004 Trimeric LpxA-like superfamily CLD04_17815 IPR001451 Hexapeptide repeat CLD04_17820 IPR003362 Bacterial sugar transferase CLD04_17825 IPR002797 Polysaccharide biosynthesis protein CLD04_17825 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain CLD04_17830 IPR029044 Nucleotide-diphospho-sugar transferases CLD04_17830 IPR001173 Glycosyltransferase 2-like CLD04_17835 IPR007345 Polysaccharide pyruvyl transferase CLD04_17840 IPR029044 Nucleotide-diphospho-sugar transferases CLD04_17840 IPR001173 Glycosyltransferase 2-like CLD04_17850 IPR001296 Glycosyl transferase, family 1 CLD04_17850 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain CLD04_17855 IPR001173 Glycosyltransferase 2-like CLD04_17855 IPR029044 Nucleotide-diphospho-sugar transferases CLD04_17860 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain CLD04_17860 IPR001296 Glycosyl transferase, family 1 CLD04_17865 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_17865 IPR036291 NAD(P)-binding domain superfamily CLD04_17865 IPR003869 Polysaccharide biosynthesis protein, CapD-like domain CLD04_17870 IPR025669 AAA domain CLD04_17870 IPR005702 Exopolysaccharide synthesis protein CLD04_17870 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_17875 IPR003856 Polysaccharide chain length determinant N-terminal domain CLD04_17880 IPR001387 Cro/C1-type helix-turn-helix domain CLD04_17880 IPR036281 SinR repressor/SinI anti-repressor, dimerisation domain superfamily CLD04_17880 IPR010981 SinR repressor/SinI anti-repressor, dimerisation domain CLD04_17880 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLD04_17885 IPR019826 Carboxylesterase type B, active site CLD04_17885 IPR000997 Cholinesterase CLD04_17885 IPR002018 Carboxylesterase, type B CLD04_17885 IPR019819 Carboxylesterase type B, conserved site CLD04_17885 IPR029058 Alpha/Beta hydrolase fold CLD04_17895 IPR008729 Phenolic acid decarboxylase CLD04_17895 IPR012674 Calycin CLD04_17900 IPR020915 Uncharacterised protein family UPF0311 CLD04_17905 IPR015942 Asp/Glu/hydantoin racemase CLD04_17905 IPR004380 Aspartate racemase CLD04_17905 IPR033134 Asp/Glu racemase, active site 2 CLD04_17905 IPR001920 Asp/Glu racemase CLD04_17905 IPR018187 Asp/Glu racemase, active site 1 CLD04_17910 IPR012338 Beta-lactamase/transpeptidase-like CLD04_17910 IPR021860 Peptidase S12, Pab87-related, C-terminal CLD04_17910 IPR001466 Beta-lactamase-related CLD04_17915 IPR003469 Glycoside hydrolase, family 68 CLD04_17915 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily CLD04_17920 IPR013189 Glycosyl hydrolase family 32, C-terminal CLD04_17920 IPR013148 Glycosyl hydrolase family 32, N-terminal CLD04_17920 IPR001362 Glycoside hydrolase, family 32 CLD04_17920 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily CLD04_17920 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily CLD04_17925 IPR002293 Amino acid/polyamine transporter I CLD04_17930 IPR001647 DNA-binding HTH domain, TetR-type CLD04_17930 IPR009057 Homeobox-like domain superfamily CLD04_17930 IPR041603 YvdT, C-terminal CLD04_17930 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CLD04_17935 IPR000390 Small multidrug resistance protein family CLD04_17940 IPR000390 Small multidrug resistance protein family CLD04_17955 IPR001907 ATP-dependent Clp protease proteolytic subunit CLD04_17955 IPR029045 ClpP/crotonase-like domain superfamily CLD04_17955 IPR023562 Clp protease proteolytic subunit /Translocation-enhancing protein TepA CLD04_17955 IPR033135 ClpP, histidine active site CLD04_17955 IPR018215 ClpP, Ser active site CLD04_17960 IPR010972 Beta-phosphoglucomutase CLD04_17960 IPR010976 Beta-phosphoglucomutase hydrolase CLD04_17960 IPR023198 Phosphoglycolate phosphatase-like, domain 2 CLD04_17960 IPR023214 HAD superfamily CLD04_17960 IPR036412 HAD-like superfamily CLD04_17960 IPR041492 Haloacid dehalogenase-like hydrolase CLD04_17960 IPR006439 HAD hydrolase, subfamily IA CLD04_17965 IPR006047 Glycosyl hydrolase, family 13, catalytic domain CLD04_17965 IPR013780 Glycosyl hydrolase, all-beta CLD04_17965 IPR017853 Glycoside hydrolase superfamily CLD04_17965 IPR032091 Maltogenic Amylase, C-terminal CLD04_17970 IPR008928 Six-hairpin glycosidase superfamily CLD04_17970 IPR012341 Six-hairpin glycosidase-like superfamily CLD04_17970 IPR005195 Glycoside hydrolase, family 65, central catalytic CLD04_17970 IPR005194 Glycoside hydrolase family 65, C-terminal CLD04_17970 IPR017045 Maltose phosphorylase/glycosyl hydrolase/vacuolar acid trehalase CLD04_17970 IPR037018 Glycoside hydrolase family 65, N-terminal domain superfamily CLD04_17970 IPR005196 Glycoside hydrolase, family 65, N-terminal CLD04_17970 IPR011013 Galactose mutarotase-like domain superfamily CLD04_17975 IPR009574 Protein of unknown function DUF1189 CLD04_17980 IPR035906 MetI-like superfamily CLD04_17980 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_17985 IPR030156 Maltose/maltodextrin transport system permease protein MalF-like CLD04_17985 IPR035906 MetI-like superfamily CLD04_17985 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_17990 IPR006059 Bacterial extracellular solute-binding protein CLD04_17990 IPR006060 Maltose/Cyclodextrin ABC transporter, substrate-binding protein CLD04_17995 IPR006047 Glycosyl hydrolase, family 13, catalytic domain CLD04_17995 IPR017853 Glycoside hydrolase superfamily CLD04_17995 IPR004185 Glycoside hydrolase, family 13, N-terminal Ig-like domain CLD04_17995 IPR013783 Immunoglobulin-like fold CLD04_18000 IPR028082 Periplasmic binding protein-like I CLD04_18000 IPR000843 LacI-type HTH domain CLD04_18000 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLD04_18005 IPR005269 Cytokinin riboside 5'-monophosphate phosphoribohydrolase LOG CLD04_18005 IPR031100 LOG family CLD04_18010 IPR011411 NTP Pyrophosphohydrolase MazG-related CLD04_18010 IPR004518 NTP pyrophosphohydrolase MazG, putative catalytic core CLD04_18015 IPR036513 STAS domain superfamily CLD04_18015 IPR002645 STAS domain CLD04_18015 IPR001902 SLC26A/SulP transporter CLD04_18015 IPR011547 SLC26A/SulP transporter domain CLD04_18020 IPR036874 Carbonic anhydrase superfamily CLD04_18020 IPR001765 Carbonic anhydrase CLD04_18025 IPR006140 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain CLD04_18025 IPR029752 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site 1 CLD04_18025 IPR036291 NAD(P)-binding domain superfamily CLD04_18025 IPR029753 D-isomer specific 2-hydroxyacid dehydrogenase, NAD-binding domain conserved site CLD04_18025 IPR006139 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLD04_18030 IPR003838 ABC transporter permease protein domain CLD04_18030 IPR027022 ABC transporter permease protein, BceB-type CLD04_18035 IPR003439 ABC transporter-like CLD04_18035 IPR003593 AAA+ ATPase domain CLD04_18035 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_18040 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLD04_18040 IPR005467 Histidine kinase domain CLD04_18040 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_18040 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_18045 IPR011006 CheY-like superfamily CLD04_18045 IPR016032 Signal transduction response regulator, C-terminal effector CLD04_18045 IPR001789 Signal transduction response regulator, receiver domain CLD04_18045 IPR039420 Transcriptional regulatory protein WalR-like CLD04_18045 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_18045 IPR001867 OmpR/PhoB-type DNA-binding domain CLD04_18055 IPR038765 Papain-like cysteine peptidase superfamily CLD04_18055 IPR001447 Arylamine N-acetyltransferase CLD04_18060 IPR035895 HPr-like superfamily CLD04_18060 IPR000032 Phosphocarrier protein HPr-like CLD04_18060 IPR002114 Phosphotransferase system, HPr serine phosphorylation site CLD04_18065 IPR018478 Sporulation transcription regulator WhiA, N-terminal domain CLD04_18065 IPR003802 Sporulation regulator WhiA CLD04_18065 IPR039518 WhiA, LAGLIDADG-like domain CLD04_18065 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_18065 IPR023054 Sporulation regulator WhiA, C-terminal CLD04_18065 IPR027434 Homing endonuclease CLD04_18070 IPR002882 LPPG:FO 2-phospho-L-lactate transferase CofD/UPF0052 CLD04_18070 IPR038136 Gluconeogenesis factor superfamily CLD04_18070 IPR010119 Gluconeogenesis factor CLD04_18075 IPR005337 RapZ-like family CLD04_18075 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_18080 IPR000086 NUDIX hydrolase domain CLD04_18080 IPR020476 NUDIX hydrolase CLD04_18080 IPR015797 NUDIX hydrolase-like domain superfamily CLD04_18085 IPR005982 Thioredoxin reductase CLD04_18085 IPR036188 FAD/NAD(P)-binding domain superfamily CLD04_18085 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site CLD04_18085 IPR023753 FAD/NAD(P)-binding domain CLD04_18090 IPR000064 Endopeptidase, NLPC/P60 domain CLD04_18090 IPR038765 Papain-like cysteine peptidase superfamily CLD04_18095 IPR013026 Tetratricopeptide repeat-containing domain CLD04_18095 IPR011990 Tetratricopeptide-like helical domain superfamily CLD04_18095 IPR019734 Tetratricopeptide repeat CLD04_18100 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_18100 IPR036640 ABC transporter type 1, transmembrane domain superfamily CLD04_18100 IPR017871 ABC transporter, conserved site CLD04_18100 IPR039421 Type I protein exporter CLD04_18100 IPR003439 ABC transporter-like CLD04_18100 IPR003593 AAA+ ATPase domain CLD04_18100 IPR011527 ABC transporter type 1, transmembrane domain CLD04_18120 IPR021130 Phosphoribosyl-ATP pyrophosphohydrolase-like CLD04_18120 IPR026660 Phosphoribosyl-AMP cyclohydrolase CLD04_18120 IPR008179 Phosphoribosyl-ATP pyrophosphohydrolase CLD04_18120 IPR023019 Histidine biosynthesis bifunctional protein HisIE CLD04_18120 IPR038019 Phosphoribosyl-AMP cyclohydrolase domain superfamily CLD04_18120 IPR002496 Phosphoribosyl-AMP cyclohydrolase domain CLD04_18125 IPR004651 Histidine biosynthesis, HisF CLD04_18125 IPR006062 Histidine biosynthesis CLD04_18125 IPR013785 Aldolase-type TIM barrel CLD04_18125 IPR011060 Ribulose-phosphate binding barrel CLD04_18130 IPR023016 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase CLD04_18130 IPR006062 Histidine biosynthesis CLD04_18130 IPR011060 Ribulose-phosphate binding barrel CLD04_18130 IPR006063 Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase HisA CLD04_18130 IPR013785 Aldolase-type TIM barrel CLD04_18135 IPR029062 Class I glutamine amidotransferase-like CLD04_18135 IPR017926 Glutamine amidotransferase CLD04_18135 IPR010139 Imidazole glycerol phosphate synthase, subunit H CLD04_18140 IPR020568 Ribosomal protein S5 domain 2-type fold CLD04_18140 IPR038494 Imidazole glycerol phosphate dehydratase domain superfamily CLD04_18140 IPR020565 Imidazoleglycerol-phosphate dehydratase, conserved site CLD04_18140 IPR000807 Imidazoleglycerol-phosphate dehydratase CLD04_18145 IPR016161 Aldehyde/histidinol dehydrogenase CLD04_18145 IPR012131 Histidinol dehydrogenase CLD04_18145 IPR022695 Histidinol dehydrogenase, monofunctional CLD04_18145 IPR001692 Histidinol dehydrogenase, conserved site CLD04_18150 IPR001348 ATP phosphoribosyltransferase HisG CLD04_18150 IPR013820 ATP phosphoribosyltransferase, catalytic domain CLD04_18150 IPR018198 ATP phosphoribosyltransferase, conserved site CLD04_18150 IPR024893 ATP phosphoribosyltransferase HisG, short form CLD04_18155 IPR004516 Histidine-tRNA ligase/ATP phosphoribosyltransferase regulatory subunit CLD04_18155 IPR004517 ATP phosphoribosyltransferase regulatory subunit CLD04_18155 IPR006195 Aminoacyl-tRNA synthetase, class II CLD04_18155 IPR041715 Class II Histidinyl-tRNA synthetase (HisRS)-like catalytic core domain CLD04_18160 IPR039563 Peptidase C39 single domain protein CLD04_18160 IPR039564 Peptidase C39-like CLD04_18160 IPR016997 Uncharacterised conserved protein UCP032442 CLD04_18165 IPR011050 Pectin lyase fold/virulence factor CLD04_18165 IPR012334 Pectin lyase fold CLD04_18165 IPR004898 Pectate lyase PlyH/PlyE-like CLD04_18170 IPR011004 Trimeric LpxA-like superfamily CLD04_18170 IPR001451 Hexapeptide repeat CLD04_18175 IPR036412 HAD-like superfamily CLD04_18175 IPR006439 HAD hydrolase, subfamily IA CLD04_18175 IPR041492 Haloacid dehalogenase-like hydrolase CLD04_18175 IPR023733 Pyrophosphatase PpaX CLD04_18175 IPR023214 HAD superfamily CLD04_18175 IPR023198 Phosphoglycolate phosphatase-like, domain 2 CLD04_18180 IPR011642 Nucleoside transporter/FeoB GTPase, Gate domain CLD04_18185 IPR001640 Phosphatidylglycerol--prolipoprotein diacylglyceryl transferase Lgt CLD04_18190 IPR011104 HPr kinase/phosphorylase, C-terminal CLD04_18190 IPR011126 HPr(Ser) kinase/phosphorylase, N-terminal CLD04_18190 IPR003755 HPr(Ser) kinase/phosphorylase CLD04_18190 IPR028979 HPr(Ser) kinase/phosphorylase-like, N-terminal domain superfamily CLD04_18195 IPR006680 Amidohydrolase-related CLD04_18195 IPR003764 N-acetylglucosamine-6-phosphate deacetylase CLD04_18195 IPR011059 Metal-dependent hydrolase, composite domain superfamily CLD04_18195 IPR032466 Metal-dependent hydrolase CLD04_18200 IPR006148 Glucosamine/galactosamine-6-phosphate isomerase CLD04_18200 IPR018321 Glucosamine-6-phosphate isomerase, conserved site CLD04_18200 IPR037171 NagB/RpiA transferase-like CLD04_18200 IPR004547 Glucosamine-6-phosphate isomerase CLD04_18210 IPR004843 Calcineurin-like phosphoesterase domain, ApaH type CLD04_18210 IPR036415 Lamin tail domain superfamily CLD04_18210 IPR001322 Lamin tail domain CLD04_18210 IPR011401 Phosphoesterase, YvnB CLD04_18210 IPR029052 Metallo-dependent phosphatase-like CLD04_18215 IPR007165 Mycobacterial 4 TMS phage holin, superfamily IV CLD04_18220 IPR007168 Phage shock protein, PspC, N-terminal CLD04_18225 IPR016599 Uncharacterised conserved protein UCP012569 CLD04_18225 IPR025164 Putative adhesin CLD04_18240 IPR001492 Flagellin CLD04_18240 IPR042187 Flagellin, C-terminal domain, subdomain 2 CLD04_18240 IPR001029 Flagellin, D0/D1 domain CLD04_18245 IPR017871 ABC transporter, conserved site CLD04_18245 IPR003439 ABC transporter-like CLD04_18245 IPR003593 AAA+ ATPase domain CLD04_18245 IPR004602 UvrABC system subunit A CLD04_18245 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_18245 IPR041552 UvrA DNA-binding domain CLD04_18245 IPR041102 UvrA, interaction domain CLD04_18250 IPR006935 Helicase/UvrB, N-terminal CLD04_18250 IPR024759 UvrB, YAD/RRR-motif-containing domain CLD04_18250 IPR041471 UvrB, interaction domain CLD04_18250 IPR004807 UvrABC system, subunit B CLD04_18250 IPR036876 UVR domain superfamily CLD04_18250 IPR001943 UVR domain CLD04_18250 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_18250 IPR001650 Helicase, C-terminal CLD04_18250 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLD04_18255 IPR019242 Protein of unknown function DUF2198 CLD04_18260 IPR036637 Phosphohistidine domain superfamily CLD04_18260 IPR002192 Pyruvate phosphate dikinase, PEP/pyruvate-binding CLD04_18260 IPR008279 PEP-utilising enzyme, mobile domain CLD04_18260 IPR013815 ATP-grasp fold, subdomain 1 CLD04_18265 IPR009057 Homeobox-like domain superfamily CLD04_18265 IPR001647 DNA-binding HTH domain, TetR-type CLD04_18270 IPR020846 Major facilitator superfamily domain CLD04_18270 IPR011701 Major facilitator superfamily CLD04_18270 IPR036259 MFS transporter superfamily CLD04_18275 IPR041489 PDZ domain 6 CLD04_18275 IPR001478 PDZ domain CLD04_18275 IPR036034 PDZ superfamily CLD04_18280 IPR035388 Swarming motility protein SwrA CLD04_18285 IPR036366 PGBD superfamily CLD04_18285 IPR005151 Tail specific protease CLD04_18285 IPR001478 PDZ domain CLD04_18285 IPR029045 ClpP/crotonase-like domain superfamily CLD04_18285 IPR036034 PDZ superfamily CLD04_18285 IPR004447 C-terminal-processing peptidase S41A CLD04_18285 IPR002477 Peptidoglycan binding-like CLD04_18285 IPR036365 PGBD-like superfamily CLD04_18285 IPR041489 PDZ domain 6 CLD04_18290 IPR003838 ABC transporter permease protein domain CLD04_18290 IPR004513 Cell division protein FtsX CLD04_18290 IPR040690 FtsX, extracellular domain CLD04_18295 IPR017871 ABC transporter, conserved site CLD04_18295 IPR005286 Cell division protein FtsE, ATP-binding CLD04_18295 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_18295 IPR003593 AAA+ ATPase domain CLD04_18295 IPR003439 ABC transporter-like CLD04_18300 IPR009056 Cytochrome c-like domain CLD04_18300 IPR036909 Cytochrome c-like domain superfamily CLD04_18300 IPR012218 Cytochrome c, Bacillus subtilis c550-related CLD04_18305 IPR003740 Uncharacterised membrane protein YitT CLD04_18305 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CLD04_18305 IPR019264 Domain of unknown function DUF2179 CLD04_18315 IPR004027 SEC-C motif CLD04_18315 IPR011115 SecA DEAD-like, N-terminal CLD04_18315 IPR036670 SecA, preprotein cross-linking domain superfamily CLD04_18315 IPR014018 SecA motor DEAD CLD04_18315 IPR036266 SecA, Wing/Scaffold superfamily CLD04_18315 IPR011130 SecA, preprotein cross-linking domain CLD04_18315 IPR000185 Protein translocase subunit SecA CLD04_18315 IPR020937 SecA conserved site CLD04_18315 IPR011116 SecA Wing/Scaffold CLD04_18315 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_18325 IPR038416 Sigma 54 modulation/S30EA ribosomal protein, C-terminal domain superfamily CLD04_18325 IPR032528 Sigma 54 modulation/S30EA ribosomal protein, C-terminal CLD04_18325 IPR003489 Ribosome hibernation promoting factor/RaiA CLD04_18325 IPR036567 Ribosome hibernation promotion factor-like CLD04_18325 IPR034694 Ribosome hibernation promoting factor, long/plastid CLD04_18340 IPR036584 Flagellar protein FliS superfamily CLD04_18340 IPR003713 Flagellar protein FliS CLD04_18345 IPR010809 Flagellar hook-associated protein 2, C-terminal CLD04_18345 IPR010810 Flagellin hook, IN motif CLD04_18345 IPR040026 Flagellar hook-associated protein 2 CLD04_18345 IPR003481 Flagellar hook-associated protein 2, N-terminal CLD04_18350 IPR005186 FlaG protein CLD04_18350 IPR035924 FlaG-like superfamily CLD04_18360 IPR001492 Flagellin CLD04_18360 IPR001029 Flagellin, D0/D1 domain CLD04_18360 IPR042187 Flagellin, C-terminal domain, subdomain 2 CLD04_18365 IPR036107 Carbon storage regulator superfamily CLD04_18365 IPR003751 Translational regulator CsrA CLD04_18370 IPR003775 Flagellar assembly factor FliW CLD04_18370 IPR024046 Flagellar assembly factor FliW domain superfamily CLD04_18380 IPR001029 Flagellin, D0/D1 domain CLD04_18380 IPR013384 Flagellar hook-associated protein 3 CLD04_18385 IPR002371 Flagellar hook-associated protein 1 CLD04_18385 IPR019776 Flagellar basal body rod protein, conserved site CLD04_18385 IPR010930 Flagellar basal-body/hook protein, C-terminal domain CLD04_18385 IPR001444 Flagellar basal body rod protein, N-terminal CLD04_18390 IPR007809 FlgN-like protein CLD04_18390 IPR036679 FlgN-like superfamily CLD04_18395 IPR007412 Anti-sigma-28 factor, FlgM CLD04_18395 IPR035890 Anti-sigma-28 factor FlgM superfamily CLD04_18395 IPR031316 Anti-sigma-28 factor FlgM, C-terminal CLD04_18400 IPR022258 Flagellar operon protein YvyF CLD04_18405 IPR005222 Competence protein ComF CLD04_18405 IPR000836 Phosphoribosyltransferase domain CLD04_18405 IPR029057 Phosphoribosyltransferase-like CLD04_18415 IPR006935 Helicase/UvrB, N-terminal CLD04_18415 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLD04_18415 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_18415 IPR001650 Helicase, C-terminal CLD04_18420 IPR003797 DegV CLD04_18425 IPR016032 Signal transduction response regulator, C-terminal effector CLD04_18425 IPR001789 Signal transduction response regulator, receiver domain CLD04_18425 IPR011006 CheY-like superfamily CLD04_18425 IPR000792 Transcription regulator LuxR, C-terminal CLD04_18430 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain CLD04_18430 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_18430 IPR005467 Histidine kinase domain CLD04_18430 IPR008595 Sensor DegS CLD04_18430 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_18430 IPR016381 Signal transduction histidine kinase, DegS CLD04_18435 IPR036956 Impact, N-terminal domain superfamily CLD04_18435 IPR001498 Impact, N-terminal CLD04_18435 IPR020569 Uncharacterised protein family UPF0029, Impact, conserved site CLD04_18435 IPR020568 Ribosomal protein S5 domain 2-type fold CLD04_18435 IPR015269 Uncharacterised domain UPF0029, Impact, C-terminal CLD04_18435 IPR035647 EF-G domain III/V-like CLD04_18435 IPR015796 Impact family, bacterial/archaeal CLD04_18435 IPR023582 Impact family CLD04_18440 IPR004474 Cell envelope-related transcriptional attenuator domain CLD04_18445 IPR018480 Phospho-N-acetylmuramoyl-pentapeptide transferase, conserved site CLD04_18445 IPR000715 Glycosyl transferase, family 4 CLD04_18455 IPR029044 Nucleotide-diphospho-sugar transferases CLD04_18455 IPR001173 Glycosyltransferase 2-like CLD04_18460 IPR003856 Polysaccharide chain length determinant N-terminal domain CLD04_18465 IPR007016 O-antigen ligase-related CLD04_18470 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily CLD04_18470 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal CLD04_18470 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal CLD04_18470 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type CLD04_18470 IPR017476 UDP-glucose/GDP-mannose dehydrogenase CLD04_18470 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CLD04_18470 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation CLD04_18470 IPR036291 NAD(P)-binding domain superfamily CLD04_18475 IPR001296 Glycosyl transferase, family 1 CLD04_18475 IPR028098 Glycosyltransferase subfamily 4-like, N-terminal domain CLD04_18480 IPR029303 Polysaccharide biosynthesis protein, C-terminal domain CLD04_18480 IPR002797 Polysaccharide biosynthesis protein CLD04_18485 IPR003362 Bacterial sugar transferase CLD04_18490 IPR029044 Nucleotide-diphospho-sugar transferases CLD04_18490 IPR041038 TarS beta-glycosyltransferase C-terminal domain 1 CLD04_18490 IPR001173 Glycosyltransferase 2-like CLD04_18495 IPR007253 Putative cell wall binding repeat 2 CLD04_18495 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain CLD04_18500 IPR013486 Sporulation stage II protein D, amidase enhancer LytB CLD04_18500 IPR013693 Sporulation stage II protein D, amidase enhancer LytB N-terminal CLD04_18500 IPR007253 Putative cell wall binding repeat 2 CLD04_18510 IPR004474 Cell envelope-related transcriptional attenuator domain CLD04_18510 IPR023734 Polyisoprenyl-teichoic acid--peptidoglycan teichoic acid transferase TagU CLD04_18515 IPR003331 UDP-N-acetylglucosamine 2-epimerase domain CLD04_18515 IPR029767 UDP-N-acetylglucosamine 2-epimerase WecB-like CLD04_18520 IPR029044 Nucleotide-diphospho-sugar transferases CLD04_18520 IPR041038 TarS beta-glycosyltransferase C-terminal domain 1 CLD04_18520 IPR001173 Glycosyltransferase 2-like CLD04_18525 IPR001296 Glycosyl transferase, family 1 CLD04_18535 IPR005771 UTP--glucose-1-phosphate uridylyltransferase, bacterial/archaeal-type CLD04_18535 IPR005835 Nucleotidyl transferase domain CLD04_18535 IPR029044 Nucleotide-diphospho-sugar transferases CLD04_18540 IPR003593 AAA+ ATPase domain CLD04_18540 IPR003439 ABC transporter-like CLD04_18540 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_18540 IPR017871 ABC transporter, conserved site CLD04_18540 IPR015860 ABC transporter, teichoic acids export, TagH CLD04_18545 IPR013525 ABC-2 type transporter CLD04_18545 IPR000412 ABC-2 transporter CLD04_18560 IPR001173 Glycosyltransferase 2-like CLD04_18560 IPR007554 CDP-glycerol glycerophosphotransferase CLD04_18560 IPR029044 Nucleotide-diphospho-sugar transferases CLD04_18570 IPR007554 CDP-glycerol glycerophosphotransferase CLD04_18575 IPR006409 Glycerol-3-phosphate cytidylyltransferase CLD04_18575 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLD04_18575 IPR004821 Cytidyltransferase-like domain CLD04_18580 IPR004629 Glycosyl transferase WecB/TagA/CpsF CLD04_18580 IPR034714 N-acetylglucosaminyldiphosphoundecaprenol N-acetyl-beta-D-mannosaminyltransferase CLD04_18585 IPR007554 CDP-glycerol glycerophosphotransferase CLD04_18590 IPR034709 Ribitol-5-phosphate cytidylyltransferase CLD04_18590 IPR034683 Cytidylyltransferase IspD/TarI CLD04_18590 IPR029044 Nucleotide-diphospho-sugar transferases CLD04_18590 IPR018294 4-diphosphocytidyl-2C-methyl-D-erythritol synthase, conserved site CLD04_18595 IPR034710 Ribulose-5-phosphate reductase CLD04_18595 IPR011032 GroES-like superfamily CLD04_18595 IPR036291 NAD(P)-binding domain superfamily CLD04_18595 IPR031640 Glucose dehydrogenase, C-terminal CLD04_18595 IPR013154 Alcohol dehydrogenase, N-terminal CLD04_18600 IPR007554 CDP-glycerol glycerophosphotransferase CLD04_18605 IPR007554 CDP-glycerol glycerophosphotransferase CLD04_18610 IPR002901 Mannosyl-glycoprotein endo-beta-N-acetylglucosamidase-like domain CLD04_18610 IPR003646 SH3-like domain, bacterial-type CLD04_18610 IPR007730 Sporulation-like domain CLD04_18615 IPR014628 Mannose-6-phosphate isomerase, Firmicutes type, short form CLD04_18615 IPR014710 RmlC-like jelly roll fold CLD04_18615 IPR011051 RmlC-like cupin domain superfamily CLD04_18615 IPR001250 Mannose-6-phosphate isomerase, type I CLD04_18620 IPR004995 Bacillus/Clostridium Ger spore germination protein CLD04_18625 IPR004761 Spore germination GerAB CLD04_18630 IPR008844 Spore germination GerAC CLD04_18630 IPR038501 Spore germination GerAC superfamily CLD04_18635 IPR020846 Major facilitator superfamily domain CLD04_18635 IPR005828 Major facilitator, sugar transporter-like CLD04_18635 IPR036259 MFS transporter superfamily CLD04_18635 IPR003663 Sugar/inositol transporter CLD04_18635 IPR005829 Sugar transporter, conserved site CLD04_18640 IPR004474 Cell envelope-related transcriptional attenuator domain CLD04_18645 IPR000150 Cof family CLD04_18645 IPR036412 HAD-like superfamily CLD04_18645 IPR023214 HAD superfamily CLD04_18645 IPR006379 HAD-superfamily hydrolase, subfamily IIB CLD04_18655 IPR038765 Papain-like cysteine peptidase superfamily CLD04_18655 IPR000064 Endopeptidase, NLPC/P60 domain CLD04_18665 IPR029052 Metallo-dependent phosphatase-like CLD04_18665 IPR019079 Capsule synthesis protein, CapA CLD04_18670 IPR008338 Capsule biosynthesis protein CapC CLD04_18675 IPR008337 Capsule biosynthesis protein CapB CLD04_18675 IPR013221 Mur ligase, central CLD04_18675 IPR036565 Mur-like, catalytic domain superfamily CLD04_18680 IPR000843 LacI-type HTH domain CLD04_18680 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLD04_18680 IPR028082 Periplasmic binding protein-like I CLD04_18685 IPR011611 Carbohydrate kinase PfkB CLD04_18685 IPR011877 Ribokinase CLD04_18685 IPR029056 Ribokinase-like CLD04_18685 IPR002139 Ribokinase/fructokinase CLD04_18685 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site CLD04_18690 IPR023064 D-ribose pyranase CLD04_18690 IPR023750 RbsD-like superfamily CLD04_18690 IPR007721 D-ribose pyranase RbsD/L-fucose mutarotase FucU CLD04_18695 IPR003439 ABC transporter-like CLD04_18695 IPR017871 ABC transporter, conserved site CLD04_18695 IPR015861 ABC transporter, ribose import, RbsA CLD04_18695 IPR003593 AAA+ ATPase domain CLD04_18695 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_18700 IPR001851 ABC transporter, permease CLD04_18705 IPR025997 Periplasmic binding protein CLD04_18705 IPR028082 Periplasmic binding protein-like I CLD04_18710 IPR036028 SH3-like domain superfamily CLD04_18710 IPR003646 SH3-like domain, bacterial-type CLD04_18715 IPR024997 Protein of unknown function DUF3892 CLD04_18720 IPR003680 Flavodoxin-like fold CLD04_18720 IPR029039 Flavoprotein-like superfamily CLD04_18725 IPR005128 Alpha-acetolactate decarboxylase CLD04_18730 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain CLD04_18730 IPR012000 Thiamine pyrophosphate enzyme, central domain CLD04_18730 IPR029061 Thiamin diphosphate-binding fold CLD04_18730 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding CLD04_18730 IPR029035 DHS-like NAD/FAD-binding domain superfamily CLD04_18730 IPR012782 Acetolactate synthase, catabolic CLD04_18730 IPR000399 TPP-binding enzyme, conserved site CLD04_18735 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_18735 IPR036390 Winged helix DNA-binding domain superfamily CLD04_18735 IPR005119 LysR, substrate-binding CLD04_18735 IPR037411 HTH-type transcriptional regulator AlsR, PBP2 domain CLD04_18735 IPR000847 Transcription regulator HTH, LysR CLD04_18755 IPR014867 Spore coat protein CotH CLD04_18765 IPR002563 Flavin reductase like domain CLD04_18765 IPR012349 FMN-binding split barrel CLD04_18770 IPR025441 Protein of unknown function DUF4181 CLD04_18775 IPR029055 Nucleophile aminohydrolases, N-terminal CLD04_18775 IPR000101 Gamma-glutamyltranspeptidase CLD04_18780 IPR000485 AsnC-type HTH domain CLD04_18780 IPR019887 Transcription regulator AsnC/Lrp, ligand binding domain CLD04_18780 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_18780 IPR036390 Winged helix DNA-binding domain superfamily CLD04_18780 IPR019888 Transcription regulator AsnC-type CLD04_18780 IPR011008 Dimeric alpha-beta barrel CLD04_18780 IPR011991 ArsR-like helix-turn-helix domain CLD04_18785 IPR003370 Chromate transporter CLD04_18790 IPR003370 Chromate transporter CLD04_18795 IPR007581 Endonuclease V CLD04_18820 IPR027797 Pre-toxin TG domain CLD04_18820 IPR025968 YwqJ-like deaminase CLD04_18820 IPR006829 LXG domain CLD04_18830 IPR031681 Domain of unknown function DUF5082 CLD04_18845 IPR017476 UDP-glucose/GDP-mannose dehydrogenase CLD04_18845 IPR014027 UDP-glucose/GDP-mannose dehydrogenase, C-terminal CLD04_18845 IPR014026 UDP-glucose/GDP-mannose dehydrogenase, dimerisation CLD04_18845 IPR001732 UDP-glucose/GDP-mannose dehydrogenase, N-terminal CLD04_18845 IPR028357 UDP-glucose 6-dehydrogenase, bacterial type CLD04_18845 IPR036291 NAD(P)-binding domain superfamily CLD04_18845 IPR036220 UDP-glucose/GDP-mannose dehydrogenase, C-terminal domain superfamily CLD04_18845 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CLD04_18850 IPR016667 Capsular polysaccharide synthesis, CpsB/CapC CLD04_18850 IPR016195 Polymerase/histidinol phosphatase-like CLD04_18855 IPR005702 Exopolysaccharide synthesis protein CLD04_18855 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_18855 IPR025669 AAA domain CLD04_18860 IPR032807 Tyrosine kinase, G-rich domain CLD04_18860 IPR003856 Polysaccharide chain length determinant N-terminal domain CLD04_18870 IPR007527 Zinc finger, SWIM-type CLD04_18875 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLD04_18875 IPR000330 SNF2-related, N-terminal domain CLD04_18875 IPR038718 SNF2-like, N-terminal domain superfamily CLD04_18875 IPR001650 Helicase, C-terminal CLD04_18875 IPR022138 Helicase SWF/SNF-related CLD04_18875 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_18885 IPR006379 HAD-superfamily hydrolase, subfamily IIB CLD04_18885 IPR036412 HAD-like superfamily CLD04_18885 IPR000150 Cof family CLD04_18885 IPR023214 HAD superfamily CLD04_18890 IPR014036 DeoR C-terminal sensor domain CLD04_18890 IPR036390 Winged helix DNA-binding domain superfamily CLD04_18890 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_18890 IPR018356 Transcription regulator, HTH DeoR-type, conserved site CLD04_18890 IPR037171 NagB/RpiA transferase-like CLD04_18890 IPR001034 DeoR-type HTH domain CLD04_18895 IPR000424 Primosome PriB/single-strand DNA-binding CLD04_18895 IPR011344 Single-stranded DNA-binding protein CLD04_18895 IPR012340 Nucleic acid-binding, OB-fold CLD04_18905 IPR025573 YwpF-like protein CLD04_18910 IPR005754 Sortase family CLD04_18910 IPR042007 Sortase A CLD04_18910 IPR023365 Sortase domain superfamily CLD04_18915 IPR001789 Signal transduction response regulator, receiver domain CLD04_18915 IPR011006 CheY-like superfamily CLD04_18915 IPR010559 Signal transduction histidine kinase, internal region CLD04_18915 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_18915 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_18920 IPR036019 Gated mechanosensitive channel CLD04_18920 IPR037673 Large-conductance mechanosensitive channel/anditomin synthesis protein L CLD04_18920 IPR019823 Large-conductance mechanosensitive channel, conserved site CLD04_18920 IPR001185 Large-conductance mechanosensitive channel CLD04_18925 IPR029069 HotDog domain superfamily CLD04_18925 IPR010084 Beta-hydroxyacyl-(acyl-carrier-protein) dehydratase FabZ CLD04_18925 IPR013114 Beta-hydroxydecanoyl thiol ester dehydrase, FabA/FabZ CLD04_18930 IPR019734 Tetratricopeptide repeat CLD04_18930 IPR040702 Response regulator aspartate phosphatase, N-terminal CLD04_18930 IPR011990 Tetratricopeptide-like helical domain superfamily CLD04_18930 IPR013026 Tetratricopeptide repeat-containing domain CLD04_18935 IPR001444 Flagellar basal body rod protein, N-terminal CLD04_18935 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like CLD04_18935 IPR010930 Flagellar basal-body/hook protein, C-terminal domain CLD04_18935 IPR020013 Flagellar hook-basal body protein, FlgE/F/G CLD04_18935 IPR019776 Flagellar basal body rod protein, conserved site CLD04_18940 IPR010930 Flagellar basal-body/hook protein, C-terminal domain CLD04_18940 IPR019776 Flagellar basal body rod protein, conserved site CLD04_18940 IPR037925 Flagellar hook-basal body protein, FlgE/F/G-like CLD04_18940 IPR001444 Flagellar basal body rod protein, N-terminal CLD04_18945 IPR004753 Cell shape determining protein MreB CLD04_18950 IPR014208 Sporulation stage III, transcriptional regulator SpoIIID CLD04_18950 IPR018356 Transcription regulator, HTH DeoR-type, conserved site CLD04_18960 IPR036390 Winged helix DNA-binding domain superfamily CLD04_18960 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_18960 IPR000835 MarR-type HTH domain CLD04_18965 IPR011701 Major facilitator superfamily CLD04_18965 IPR020846 Major facilitator superfamily domain CLD04_18965 IPR036259 MFS transporter superfamily CLD04_18970 IPR012334 Pectin lyase fold CLD04_18970 IPR011050 Pectin lyase fold/virulence factor CLD04_18970 IPR006633 Carbohydrate-binding/sugar hydrolysis domain CLD04_18970 IPR006626 Parallel beta-helix repeat CLD04_18970 IPR039448 Right handed beta helix domain CLD04_18975 IPR012681 Nucleobase cation symporter-1, NCS1 CLD04_18975 IPR001248 Purine-cytosine permease CLD04_18975 IPR038271 Purine-cytosine permease superfamily CLD04_18980 IPR020846 Major facilitator superfamily domain CLD04_18980 IPR011701 Major facilitator superfamily CLD04_18980 IPR036259 MFS transporter superfamily CLD04_18985 IPR000868 Isochorismatase-like CLD04_18985 IPR016291 Isochorismatase CLD04_18985 IPR036380 Isochorismatase-like superfamily CLD04_18995 IPR001905 Ammonium transporter CLD04_18995 IPR018047 Ammonium transporter, conserved site CLD04_18995 IPR029020 Ammonium/urea transporter CLD04_18995 IPR024041 Ammonium transporter AmtB-like domain CLD04_19000 IPR011322 Nitrogen regulatory PII-like, alpha/beta CLD04_19000 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CLD04_19000 IPR017918 Nitrogen regulatory protein PII, conserved site CLD04_19000 IPR002187 Nitrogen regulatory protein PII CLD04_19005 IPR000326 Phosphatidic acid phosphatase type 2/haloperoxidase CLD04_19005 IPR036938 Phosphatidic acid phosphatase type 2/haloperoxidase superfamily CLD04_19005 IPR033879 Undecaprenyl-diphosphatase CLD04_19010 IPR006976 VanZ-like CLD04_19015 IPR011055 Duplicated hybrid motif CLD04_19015 IPR016047 Peptidase M23 CLD04_19020 IPR000182 GNAT domain CLD04_19020 IPR016181 Acyl-CoA N-acyltransferase CLD04_19025 IPR035287 Protein of unknown function DUF5362 CLD04_19030 IPR020205 Uncharacterised protein family, YwnF, transmembrane CLD04_19035 IPR025202 Phospholipase D-like domain CLD04_19035 IPR030874 Cardiolipin synthase, Firmicutes-type CLD04_19035 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_19035 IPR027379 Cardiolipin synthase N-terminal CLD04_19035 IPR001736 Phospholipase D/Transphosphatidylase CLD04_19035 IPR022924 Cardiolipin synthase CLD04_19040 IPR009061 Putative DNA-binding domain superfamily CLD04_19040 IPR036244 TipA-like multidrug resistance regulator, antibiotic-recognition domain CLD04_19040 IPR012925 TipAS antibiotic-recognition domain CLD04_19040 IPR000551 MerR-type HTH domain CLD04_19045 IPR035287 Protein of unknown function DUF5362 CLD04_19050 IPR016040 NAD(P)-binding domain CLD04_19050 IPR036291 NAD(P)-binding domain superfamily CLD04_19055 IPR000944 Transcription regulator Rrf2-type CLD04_19055 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_19055 IPR036390 Winged helix DNA-binding domain superfamily CLD04_19060 IPR011059 Metal-dependent hydrolase, composite domain superfamily CLD04_19060 IPR011612 Urease alpha-subunit, N-terminal domain CLD04_19060 IPR017950 Urease active site CLD04_19060 IPR029754 Urease nickel binding site CLD04_19060 IPR032466 Metal-dependent hydrolase CLD04_19060 IPR005848 Urease, alpha subunit CLD04_19060 IPR006680 Amidohydrolase-related CLD04_19060 IPR017951 Urease alpha subunit, C-terminal CLD04_19065 IPR036461 Urease, beta subunit superfamily CLD04_19065 IPR002019 Urease, beta subunit CLD04_19070 IPR012010 Urease, gamma subunit CLD04_19070 IPR036463 Urease, gamma subunit superfamily CLD04_19070 IPR002026 Urease, gamma/gamma-beta subunit CLD04_19075 IPR017871 ABC transporter, conserved site CLD04_19075 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_19075 IPR003593 AAA+ ATPase domain CLD04_19075 IPR003439 ABC transporter-like CLD04_19075 IPR030660 High-affinity branched-chain amino acid transport ATP-binding protein CLD04_19080 IPR017871 ABC transporter, conserved site CLD04_19080 IPR003593 AAA+ ATPase domain CLD04_19080 IPR003439 ABC transporter-like CLD04_19080 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_19080 IPR032823 Branched-chain amino acid ATP-binding cassette transporter, C-terminal CLD04_19090 IPR001851 ABC transporter, permease CLD04_19095 IPR039570 AmiC, periplasmic binding domain CLD04_19095 IPR028082 Periplasmic binding protein-like I CLD04_19095 IPR000709 Leu/Ile/Val-binding protein CLD04_19100 IPR008462 CsbD-like domain CLD04_19100 IPR036629 YjbJ superfamily CLD04_19110 IPR011990 Tetratricopeptide-like helical domain superfamily CLD04_19110 IPR041617 MalT-like TPR region CLD04_19110 IPR040702 Response regulator aspartate phosphatase, N-terminal CLD04_19110 IPR019734 Tetratricopeptide repeat CLD04_19110 IPR013026 Tetratricopeptide repeat-containing domain CLD04_19120 IPR007197 Radical SAM CLD04_19120 IPR013785 Aldolase-type TIM barrel CLD04_19120 IPR013483 Molybdenum cofactor biosynthesis protein A CLD04_19120 IPR000385 MoaA/nifB/pqqE, iron-sulphur binding, conserved site CLD04_19120 IPR006638 Elp3/MiaB/NifB CLD04_19120 IPR010505 Molybdenum cofactor synthesis C-terminal CLD04_19125 IPR003786 Sulfur carrier protein FdhD CLD04_19125 IPR016193 Cytidine deaminase-like CLD04_19135 IPR002035 von Willebrand factor, type A CLD04_19135 IPR036465 von Willebrand factor A-like domain superfamily CLD04_19145 IPR002035 von Willebrand factor, type A CLD04_19145 IPR036465 von Willebrand factor A-like domain superfamily CLD04_19150 IPR014225 Sporulation stage II, protein D firmicutes CLD04_19150 IPR013693 Sporulation stage II protein D, amidase enhancer LytB N-terminal CLD04_19150 IPR013486 Sporulation stage II protein D, amidase enhancer LytB CLD04_19155 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase CLD04_19155 IPR036968 Enolpyruvate transferase domain superfamily CLD04_19155 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta CLD04_19155 IPR001986 Enolpyruvate transferase domain CLD04_19160 IPR036209 YwmB-like superfamily CLD04_19160 IPR014794 TATA-box binding CLD04_19165 IPR009526 Protein of unknown function DUF1146 CLD04_19175 IPR036771 F0F1 ATP synthase delta/epsilon subunit, N-terminal CLD04_19175 IPR020546 ATP synthase, F1 complex, delta/epsilon subunit, N-terminal CLD04_19175 IPR020547 ATP synthase delta/epsilon subunit, C-terminal domain CLD04_19175 IPR036794 ATP synthase delta/epsilon subunit, C-terminal domain superfamily CLD04_19175 IPR001469 ATP synthase, F1 complex, delta/epsilon subunit CLD04_19180 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_19180 IPR024034 ATPase, F1/V1 complex, beta/alpha subunit, C-terminal CLD04_19180 IPR003593 AAA+ ATPase domain CLD04_19180 IPR005722 ATP synthase, F1 complex, beta subunit CLD04_19180 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain CLD04_19180 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain CLD04_19180 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily CLD04_19180 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site CLD04_19185 IPR000131 ATP synthase, F1 complex, gamma subunit CLD04_19185 IPR023632 ATP synthase, F1 complex, gamma subunit conserved site CLD04_19185 IPR035968 ATP synthase, F1 complex, gamma subunit superfamily CLD04_19190 IPR033732 ATP synthase, F1 complex, alpha subunit nucleotide-binding domain CLD04_19190 IPR005294 ATP synthase, F1 complex, alpha subunit CLD04_19190 IPR023366 ATP synthase subunit alpha, N-terminal domain-like superfamily CLD04_19190 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_19190 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain CLD04_19190 IPR036121 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain superfamily CLD04_19190 IPR004100 ATPase, F1/V1/A1 complex, alpha/beta subunit, N-terminal domain CLD04_19190 IPR020003 ATPase, alpha/beta subunit, nucleotide-binding domain, active site CLD04_19190 IPR000793 ATP synthase, alpha subunit, C-terminal CLD04_19190 IPR038376 ATP synthase, alpha subunit, C-terminal domain superfamily CLD04_19195 IPR000711 ATPase, OSCP/delta subunit CLD04_19195 IPR026015 F1F0 ATP synthase OSCP/delta subunit, N-terminal domain superfamily CLD04_19195 IPR020781 ATPase, OSCP/delta subunit, conserved site CLD04_19200 IPR002146 ATP synthase, F0 complex, subunit b/b', bacterial/chloroplast CLD04_19200 IPR005864 ATP synthase, F0 complex, subunit b, bacterial CLD04_19200 IPR028987 F-type ATP synthase subunit B-like, membrane domain superfamily CLD04_19205 IPR002379 V-ATPase proteolipid subunit C-like domain CLD04_19205 IPR035921 F/V-ATP synthase subunit C superfamily CLD04_19205 IPR020537 ATP synthase, F0 complex, subunit C, DCCD-binding site CLD04_19205 IPR038662 F1F0 ATP synthase subunit C superfamily CLD04_19205 IPR000454 ATP synthase, F0 complex, subunit C CLD04_19205 IPR005953 ATP synthase, F0 complex, subunit C, bacterial/chloroplast CLD04_19210 IPR000568 ATP synthase, F0 complex, subunit A CLD04_19210 IPR035908 ATP synthase, F0 complex, subunit A superfamily CLD04_19210 IPR023011 ATP synthase, F0 complex, subunit A, active site CLD04_19215 IPR005598 ATP synthase protein I CLD04_19215 IPR039072 ATP synthase protein I, Bacilli-type CLD04_19220 IPR029057 Phosphoribosyltransferase-like CLD04_19220 IPR034332 Uracil phosphoribosyltransferase, bacterial-type CLD04_19220 IPR005765 Uracil phosphoribosyl transferase CLD04_19220 IPR000836 Phosphoribosyltransferase domain CLD04_19225 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_19225 IPR039429 Serine hydroxymethyltransferase-like domain CLD04_19225 IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site CLD04_19225 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_19225 IPR001085 Serine hydroxymethyltransferase CLD04_19225 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_19230 IPR006340 Protein of unknown function DUF436 CLD04_19230 IPR028345 Aminoglycoside 3-N-acetyltransferase-like CLD04_19235 IPR036569 Sugar-phosphate isomerase, RpiB/LacA/LacB superfamily CLD04_19235 IPR004785 Ribose 5-phosphate isomerase B CLD04_19235 IPR003500 Sugar-phosphate isomerase, RpiB/LacA/LacB family CLD04_19240 IPR036196 Phosphotyrosine protein phosphatase I superfamily CLD04_19240 IPR017867 Protein-tyrosine phosphatase, low molecular weight CLD04_19240 IPR023485 Phosphotyrosine protein phosphatase I CLD04_19245 IPR022929 Putative manganese efflux pump MntP CLD04_19245 IPR003810 Putative manganese efflux pump CLD04_19250 IPR010923 tRNA threonylcarbamoyladenosine biosynthesis protein SUA5 CLD04_19250 IPR038385 Threonylcarbamoyl-AMP synthase, C-terminal domain superfamily CLD04_19250 IPR005145 Putative GTP-binding controlling metal-binding domain CLD04_19250 IPR017945 DHBP synthase RibB-like alpha/beta domain superfamily CLD04_19250 IPR006070 YrdC-like domain CLD04_19255 IPR016181 Acyl-CoA N-acyltransferase CLD04_19260 IPR014202 Sporulation stage II, protein R CLD04_19265 IPR031374 Uncharacterised protein family UPF0715 CLD04_19270 IPR035167 Protein of unknown function DUF5316 CLD04_19275 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_19275 IPR019874 Protein-(glutamine-N5) methyltransferase, release factor-specific CLD04_19275 IPR040758 Release factor glutamine methyltransferase, N-terminal domain CLD04_19275 IPR004556 Methyltransferase HemK-like CLD04_19275 IPR007848 Methyltransferase small domain CLD04_19275 IPR002052 DNA methylase, N-6 adenine-specific, conserved site CLD04_19280 IPR005139 Peptide chain release factor CLD04_19280 IPR000352 Peptide chain release factor class I CLD04_19280 IPR004373 Peptide chain release factor 1 CLD04_19285 IPR037478 YwkD-like domain CLD04_19285 IPR037523 Vicinal oxygen chelate (VOC) domain CLD04_19285 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CLD04_19285 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CLD04_19290 IPR023522 Chromosome-anchoring protein RacA CLD04_19290 IPR009061 Putative DNA-binding domain superfamily CLD04_19290 IPR000551 MerR-type HTH domain CLD04_19295 IPR004776 Membrane transport protein CLD04_19295 IPR014024 Auxin efflux carrier, plant type CLD04_19300 IPR015884 Malic enzyme, conserved site CLD04_19300 IPR012301 Malic enzyme, N-terminal domain CLD04_19300 IPR037062 Malic enzyme, N-terminal domain superfamily CLD04_19300 IPR012302 Malic enzyme, NAD-binding CLD04_19300 IPR001891 Malic oxidoreductase CLD04_19300 IPR036291 NAD(P)-binding domain superfamily CLD04_19305 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_19305 IPR020633 Thymidine kinase, conserved site CLD04_19305 IPR001267 Thymidine kinase CLD04_19310 IPR042105 Ribosomal protein L31 superfamily CLD04_19310 IPR027491 Ribosomal protein L31 type A CLD04_19310 IPR002150 Ribosomal protein L31 CLD04_19310 IPR034704 L28p-like CLD04_19315 IPR011129 Cold shock domain CLD04_19315 IPR012340 Nucleic acid-binding, OB-fold CLD04_19315 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_19315 IPR041703 Transcription termination factor Rho, ATP binding domain CLD04_19315 IPR003593 AAA+ ATPase domain CLD04_19315 IPR036269 Rho termination factor, N-terminal domain superfamily CLD04_19315 IPR004665 Transcription termination factor Rho CLD04_19315 IPR000194 ATPase, F1/V1/A1 complex, alpha/beta subunit, nucleotide-binding domain CLD04_19315 IPR011113 Rho termination factor, RNA-binding domain CLD04_19315 IPR011112 Rho termination factor, N-terminal CLD04_19320 IPR004464 Fructose-1,6-bisphosphatase class 2/Sedoheputulose-1,7-bisphosphatase CLD04_19325 IPR005750 UDP-N-acetylglucosamine 1-carboxyvinyltransferase CLD04_19325 IPR013792 RNA 3'-terminal phosphate cyclase/enolpyruvate transferase, alpha/beta CLD04_19325 IPR036968 Enolpyruvate transferase domain superfamily CLD04_19325 IPR001986 Enolpyruvate transferase domain CLD04_19330 IPR013785 Aldolase-type TIM barrel CLD04_19330 IPR004731 Transaldolase type 3B/Fructose-6-phosphate aldolase CLD04_19330 IPR022999 Transaldolase type 3B, putative CLD04_19330 IPR001585 Transaldolase/Fructose-6-phosphate aldolase CLD04_19330 IPR018225 Transaldolase, active site CLD04_19330 IPR033919 Transaldolase/Fructose-6-phosphate aldolase, archaeal/bacterial CLD04_19335 IPR011289 Fructose-1,6-bisphosphate aldolase, class 2 CLD04_19335 IPR000771 Fructose-bisphosphate aldolase, class-II CLD04_19335 IPR013785 Aldolase-type TIM barrel CLD04_19340 IPR001789 Signal transduction response regulator, receiver domain CLD04_19340 IPR011006 CheY-like superfamily CLD04_19345 IPR019676 Domain of unknown function (DUF2529) CLD04_19350 IPR012337 Ribonuclease H-like superfamily CLD04_19350 IPR001584 Integrase, catalytic core CLD04_19350 IPR038965 Transposase InsF-like CLD04_19350 IPR036397 Ribonuclease H superfamily CLD04_19355 IPR038965 Transposase InsF-like CLD04_19355 IPR012337 Ribonuclease H-like superfamily CLD04_19355 IPR036397 Ribonuclease H superfamily CLD04_19355 IPR001584 Integrase, catalytic core CLD04_19360 IPR017926 Glutamine amidotransferase CLD04_19360 IPR017456 CTP synthase, N-terminal CLD04_19360 IPR004468 CTP synthase CLD04_19360 IPR029062 Class I glutamine amidotransferase-like CLD04_19360 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_19360 IPR033828 CTP synthase GATase domain CLD04_19365 IPR007759 HB1/Asxl, restriction endonuclease HTH domain CLD04_19365 IPR029757 DNA-directed RNA polymerase subunit delta CLD04_19365 IPR038087 DNA-directed RNA polymerase subunit delta domain superfamily CLD04_19370 IPR006089 Acyl-CoA dehydrogenase, conserved site CLD04_19370 IPR013786 Acyl-CoA dehydrogenase/oxidase, N-terminal CLD04_19370 IPR009075 Acyl-CoA dehydrogenase/oxidase C-terminal CLD04_19370 IPR006091 Acyl-CoA oxidase/dehydrogenase, central domain CLD04_19370 IPR009100 Acyl-CoA dehydrogenase/oxidase, N-terminal and middle domain superfamily CLD04_19370 IPR036250 Acyl-CoA dehydrogenase-like, C-terminal CLD04_19370 IPR037069 Acyl-CoA dehydrogenase/oxidase, N-terminal domain superfamily CLD04_19375 IPR004017 Cysteine-rich domain CLD04_19375 IPR009051 Alpha-helical ferredoxin CLD04_19375 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLD04_19375 IPR036197 NarG-like superfamily CLD04_19375 IPR017900 4Fe-4S ferredoxin, iron-sulphur binding, conserved site CLD04_19380 IPR001736 Phospholipase D/Transphosphatidylase CLD04_19380 IPR025202 Phospholipase D-like domain CLD04_19380 IPR022924 Cardiolipin synthase CLD04_19385 IPR004601 UV-endonuclease UvdE CLD04_19385 IPR036237 Xylose isomerase-like superfamily CLD04_19385 IPR023520 UV-endonuclease UvdE, bacterial CLD04_19395 IPR024072 Dihydrofolate reductase-like domain superfamily CLD04_19395 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal CLD04_19400 IPR017871 ABC transporter, conserved site CLD04_19400 IPR003593 AAA+ ATPase domain CLD04_19400 IPR011527 ABC transporter type 1, transmembrane domain CLD04_19400 IPR036640 ABC transporter type 1, transmembrane domain superfamily CLD04_19400 IPR003439 ABC transporter-like CLD04_19400 IPR039421 Type I protein exporter CLD04_19400 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_19405 IPR030874 Cardiolipin synthase, Firmicutes-type CLD04_19405 IPR022924 Cardiolipin synthase CLD04_19405 IPR027379 Cardiolipin synthase N-terminal CLD04_19405 IPR025202 Phospholipase D-like domain CLD04_19405 IPR001736 Phospholipase D/Transphosphatidylase CLD04_19420 IPR023234 NarG-like domain CLD04_19420 IPR036197 NarG-like superfamily CLD04_19420 IPR003816 Nitrate reductase, gamma subunit CLD04_19425 IPR042291 Nitrate reductase chaperone, NarJ, domain 2 CLD04_19425 IPR036411 TorD-like superfamily CLD04_19425 IPR003765 Nitrate reductase chaperone, NarJ CLD04_19425 IPR020945 DMSO/Nitrate reductase chaperone CLD04_19425 IPR042290 Nitrate reductase chaperone, NarJ, domain 1 CLD04_19430 IPR017896 4Fe-4S ferredoxin-type, iron-sulphur binding domain CLD04_19430 IPR038262 Nitrate reductase beta, C-terminal domain superfamily CLD04_19430 IPR029263 Respiratory nitrate reductase beta, C-terminal CLD04_19430 IPR006547 Nitrate reductase, beta subunit CLD04_19435 IPR006468 Nitrate reductase, alpha subunit CLD04_19435 IPR028189 Nitrate reductase, alpha subunit, N-terminal CLD04_19435 IPR037943 Nitrate reductase alpha subunit-like, MopB domain CLD04_19435 IPR006656 Molybdopterin oxidoreductase CLD04_19435 IPR006657 Molybdopterin dinucleotide-binding domain CLD04_19435 IPR009010 Aspartate decarboxylase-like domain superfamily CLD04_19435 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain CLD04_19435 IPR006655 Molybdopterin oxidoreductase, prokaryotic, conserved site CLD04_19435 IPR027467 Molybdopterin oxidoreductase, molybdopterin cofactor binding site CLD04_19440 IPR014710 RmlC-like jelly roll fold CLD04_19440 IPR018490 Cyclic nucleotide-binding-like CLD04_19445 IPR025576 YwiC-like protein CLD04_19450 IPR018335 Transcription regulator HTH, Crp-type, conserved site CLD04_19450 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_19450 IPR018490 Cyclic nucleotide-binding-like CLD04_19450 IPR036390 Winged helix DNA-binding domain superfamily CLD04_19450 IPR014710 RmlC-like jelly roll fold CLD04_19450 IPR012318 Crp-type HTH domain CLD04_19450 IPR000595 Cyclic nucleotide-binding domain CLD04_19455 IPR011701 Major facilitator superfamily CLD04_19455 IPR020846 Major facilitator superfamily domain CLD04_19455 IPR036259 MFS transporter superfamily CLD04_19460 IPR005148 Arginyl tRNA synthetase N-terminal domain CLD04_19460 IPR036695 Arginyl tRNA synthetase N-terminal domain superfamily CLD04_19460 IPR035684 Arginyl-tRNA synthetase, catalytic core domain CLD04_19460 IPR008909 DALR anticodon binding CLD04_19460 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLD04_19460 IPR009080 Aminoacyl-tRNA synthetase, class Ia, anticodon-binding CLD04_19460 IPR001278 Arginine-tRNA ligase CLD04_19460 IPR001412 Aminoacyl-tRNA synthetase, class I, conserved site CLD04_19465 IPR015231 Protein of unknown function DUF1934 CLD04_19465 IPR012674 Calycin CLD04_19470 IPR021539 Bacteriocin subtilosin A CLD04_19480 IPR008792 Coenzyme PQQ synthesis protein D CLD04_19480 IPR006638 Elp3/MiaB/NifB CLD04_19480 IPR023885 4Fe4S-binding SPASM domain CLD04_19480 IPR007197 Radical SAM CLD04_19480 IPR013785 Aldolase-type TIM barrel CLD04_19490 IPR003439 ABC transporter-like CLD04_19490 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_19500 IPR007863 Peptidase M16, C-terminal CLD04_19500 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like CLD04_19505 IPR011249 Metalloenzyme, LuxS/M16 peptidase-like CLD04_19505 IPR011765 Peptidase M16, N-terminal CLD04_19515 IPR015943 WD40/YVTN repeat-like-containing domain superfamily CLD04_19515 IPR011045 Nitrous oxide reductase, N-terminal CLD04_19520 IPR015943 WD40/YVTN repeat-like-containing domain superfamily CLD04_19520 IPR011045 Nitrous oxide reductase, N-terminal CLD04_19530 IPR019734 Tetratricopeptide repeat CLD04_19530 IPR011990 Tetratricopeptide-like helical domain superfamily CLD04_19530 IPR013026 Tetratricopeptide repeat-containing domain CLD04_19530 IPR040702 Response regulator aspartate phosphatase, N-terminal CLD04_19545 IPR023696 Ureohydrolase domain superfamily CLD04_19545 IPR020855 Ureohydrolase, manganese-binding site CLD04_19545 IPR006035 Ureohydrolase CLD04_19545 IPR005925 Agmatinase-related CLD04_19550 IPR030374 Polyamine biosynthesis domain CLD04_19550 IPR037163 Spermidine synthase, tetramerisation domain superfamily CLD04_19550 IPR035246 Spermidine synthase, tetramerisation domain CLD04_19550 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_19550 IPR030373 Polyamine biosynthesis domain, conserved site CLD04_19550 IPR001045 Spermidine/spermine synthases CLD04_19555 IPR023346 Lysozyme-like domain superfamily CLD04_19555 IPR012338 Beta-lactamase/transpeptidase-like CLD04_19555 IPR001264 Glycosyl transferase, family 51 CLD04_19555 IPR001460 Penicillin-binding protein, transpeptidase CLD04_19555 IPR036950 Penicillin binding protein transglycosylase domain CLD04_19565 IPR014852 Uncharacterised protein YwhD CLD04_19570 IPR008915 Peptidase M50 CLD04_19575 IPR018191 4-oxalocrotonate tautomerase, Pseudomonas-type CLD04_19575 IPR004370 4-oxalocrotonate tautomerase CLD04_19575 IPR014347 Tautomerase/MIF superfamily CLD04_19580 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_19580 IPR036390 Winged helix DNA-binding domain superfamily CLD04_19580 IPR000835 MarR-type HTH domain CLD04_19585 IPR004095 TGS CLD04_19585 IPR006195 Aminoacyl-tRNA synthetase, class II CLD04_19585 IPR004154 Anticodon-binding CLD04_19585 IPR036621 Anticodon-binding domain superfamily CLD04_19585 IPR012675 Beta-grasp domain superfamily CLD04_19585 IPR012676 TGS-like CLD04_19585 IPR002320 Threonine-tRNA ligase, class IIa CLD04_19585 IPR018163 Threonyl/alanyl tRNA synthetase, class II-like, putative editing domain superfamily CLD04_19585 IPR002314 Aminoacyl-tRNA synthetase, class II (G/ P/ S/T) CLD04_19585 IPR033728 Threonine-tRNA ligase catalytic core domain CLD04_19585 IPR012947 Threonyl/alanyl tRNA synthetase, SAD CLD04_19590 IPR011701 Major facilitator superfamily CLD04_19590 IPR004638 Drug resistance transporter EmrB-like CLD04_19590 IPR020846 Major facilitator superfamily domain CLD04_19590 IPR036259 MFS transporter superfamily CLD04_19595 IPR000944 Transcription regulator Rrf2-type CLD04_19595 IPR036390 Winged helix DNA-binding domain superfamily CLD04_19595 IPR030489 Transcription regulator Rrf2-type, conserved site CLD04_19595 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_19605 IPR006674 HD domain CLD04_19605 IPR003607 HD/PDEase domain CLD04_19610 IPR009910 Protein of unknown function DUF1450 CLD04_19610 IPR020880 Protein of unknown function UPF0741 CLD04_19615 IPR017877 Myb-like domain CLD04_19615 IPR014243 Transcription factor, RsfA CLD04_19620 IPR004779 Carboxylate/Amino Acid/Amine Transporter CLD04_19620 IPR000620 EamA domain CLD04_19625 IPR004143 Biotinyl protein ligase (BPL) and lipoyl protein ligase (LPL), catalytic domain CLD04_19625 IPR024897 Octanoyltransferase LipL CLD04_19630 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_19630 IPR036390 Winged helix DNA-binding domain superfamily CLD04_19630 IPR005119 LysR, substrate-binding CLD04_19630 IPR000847 Transcription regulator HTH, LysR CLD04_19635 IPR002505 Phosphate acetyl/butaryl transferase CLD04_19635 IPR042113 Phosphate acetyltransferase, domain 1 CLD04_19635 IPR004614 Phosphate acetyltransferase CLD04_19635 IPR042112 Phosphate acetyltransferase, domain 2 CLD04_19635 IPR012147 Phosphate acetyl/butyryltransferase CLD04_19650 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_19650 IPR004838 Aminotransferases, class-I, pyridoxal-phosphate-binding site CLD04_19650 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_19650 IPR004839 Aminotransferase, class I/classII CLD04_19650 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_19655 IPR022324 Bacilysin exporter BacE, putative CLD04_19655 IPR011701 Major facilitator superfamily CLD04_19655 IPR036259 MFS transporter superfamily CLD04_19660 IPR011761 ATP-grasp fold CLD04_19660 IPR013815 ATP-grasp fold, subdomain 1 CLD04_19665 IPR002347 Short-chain dehydrogenase/reductase SDR CLD04_19665 IPR020904 Short-chain dehydrogenase/reductase, conserved site CLD04_19665 IPR036291 NAD(P)-binding domain superfamily CLD04_19680 IPR036259 MFS transporter superfamily CLD04_19680 IPR020846 Major facilitator superfamily domain CLD04_19680 IPR011701 Major facilitator superfamily CLD04_19685 IPR004841 Amino acid permease/ SLC12A domain CLD04_19685 IPR004840 Amino acid permease, conserved site CLD04_19690 IPR012166 Uncharacterised protein family RocB CLD04_19690 IPR002933 Peptidase M20 CLD04_19695 IPR016160 Aldehyde dehydrogenase, cysteine active site CLD04_19695 IPR016161 Aldehyde/histidinol dehydrogenase CLD04_19695 IPR029510 Aldehyde dehydrogenase, glutamic acid active site CLD04_19695 IPR016162 Aldehyde dehydrogenase, N-terminal CLD04_19695 IPR015590 Aldehyde dehydrogenase domain CLD04_19695 IPR005932 1-pyrroline-5-carboxylate dehydrogenase CLD04_19695 IPR016163 Aldehyde dehydrogenase, C-terminal CLD04_19700 IPR036291 NAD(P)-binding domain superfamily CLD04_19700 IPR033922 NAD(P) binding domain of glutamate dehydrogenase CLD04_19700 IPR014362 Glutamate dehydrogenase CLD04_19700 IPR033524 Leu/Phe/Val dehydrogenases active site CLD04_19700 IPR006097 Glutamate/phenylalanine/leucine/valine dehydrogenase, dimerisation domain CLD04_19700 IPR006095 Glutamate/phenylalanine/leucine/valine dehydrogenase CLD04_19700 IPR006096 Glutamate/phenylalanine/leucine/valine dehydrogenase, C-terminal CLD04_19705 IPR034650 YuaB-like CLD04_19705 IPR038480 YuaB-like superfamily CLD04_19710 IPR000888 dTDP-4-dehydrorhamnose 3,5-epimerase-related CLD04_19710 IPR011051 RmlC-like cupin domain superfamily CLD04_19710 IPR014710 RmlC-like jelly roll fold CLD04_19715 IPR029903 RmlD-like substrate binding domain CLD04_19715 IPR036291 NAD(P)-binding domain superfamily CLD04_19715 IPR005913 dTDP-4-dehydrorhamnose reductase family CLD04_19720 IPR016040 NAD(P)-binding domain CLD04_19720 IPR005888 dTDP-glucose 4,6-dehydratase CLD04_19720 IPR036291 NAD(P)-binding domain superfamily CLD04_19725 IPR029044 Nucleotide-diphospho-sugar transferases CLD04_19725 IPR005907 Glucose-1-phosphate thymidylyltransferase, short form CLD04_19725 IPR005835 Nucleotidyl transferase domain CLD04_19730 IPR007235 Glycosyl transferase, family 28, C-terminal CLD04_19735 IPR003329 Acylneuraminate cytidylyltransferase CLD04_19735 IPR029044 Nucleotide-diphospho-sugar transferases CLD04_19740 IPR013785 Aldolase-type TIM barrel CLD04_19740 IPR013974 SAF domain CLD04_19740 IPR013132 N-acetylneuraminic acid synthase, N-terminal CLD04_19740 IPR006190 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal CLD04_19740 IPR036732 Antifreeze-like/N-acetylneuraminic acid synthase C-terminal domain superfamily CLD04_19745 IPR016181 Acyl-CoA N-acyltransferase CLD04_19745 IPR000182 GNAT domain CLD04_19750 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_19750 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_19750 IPR000653 DegT/DnrJ/EryC1/StrS aminotransferase CLD04_19750 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_19755 IPR007554 CDP-glycerol glycerophosphotransferase CLD04_19760 IPR001173 Glycosyltransferase 2-like CLD04_19760 IPR029044 Nucleotide-diphospho-sugar transferases CLD04_19770 IPR014099 Spore coat protein GerQ CLD04_19775 IPR006696 Protein of unknown function DUF423 CLD04_19780 IPR006043 Xanthine/uracil/vitamin C permease CLD04_19780 IPR006042 Xanthine/uracil permease CLD04_19785 IPR035218 Protein of unknown function DUF5327 CLD04_19790 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent CLD04_19790 IPR016160 Aldehyde dehydrogenase, cysteine active site CLD04_19790 IPR029510 Aldehyde dehydrogenase, glutamic acid active site CLD04_19790 IPR015590 Aldehyde dehydrogenase domain CLD04_19790 IPR016161 Aldehyde/histidinol dehydrogenase CLD04_19790 IPR016162 Aldehyde dehydrogenase, N-terminal CLD04_19790 IPR016163 Aldehyde dehydrogenase, C-terminal CLD04_19795 IPR018085 Uracil-DNA glycosylase, active site CLD04_19795 IPR002043 Uracil-DNA glycosylase family 1 CLD04_19795 IPR036895 Uracil-DNA glycosylase-like domain superfamily CLD04_19795 IPR005122 Uracil-DNA glycosylase-like CLD04_19800 IPR001173 Glycosyltransferase 2-like CLD04_19800 IPR029044 Nucleotide-diphospho-sugar transferases CLD04_19815 IPR036390 Winged helix DNA-binding domain superfamily CLD04_19815 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_19815 IPR005149 Transcription regulator PadR, N-terminal CLD04_19815 IPR011991 ArsR-like helix-turn-helix domain CLD04_19820 IPR029056 Ribokinase-like CLD04_19820 IPR004399 Hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase CLD04_19820 IPR013749 Pyridoxamine kinase/Phosphomethylpyrimidine kinase CLD04_19830 IPR006232 Sucrose-6-phosphate hydrolase CLD04_19830 IPR013189 Glycosyl hydrolase family 32, C-terminal CLD04_19830 IPR013320 Concanavalin A-like lectin/glucanase domain superfamily CLD04_19830 IPR018053 Glycoside hydrolase, family 32, active site CLD04_19830 IPR013148 Glycosyl hydrolase family 32, N-terminal CLD04_19830 IPR001362 Glycoside hydrolase, family 32 CLD04_19830 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily CLD04_19835 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site CLD04_19835 IPR013013 Phosphotransferase system, EIIC component, type 1 CLD04_19835 IPR036878 Glucose permease domain IIB CLD04_19835 IPR001996 Phosphotransferase system, IIB component, type 1 CLD04_19835 IPR010973 Phosphotransferase system, sucrose-specific IIBC component CLD04_19835 IPR003352 Phosphotransferase system, EIIC CLD04_19835 IPR004719 Phosphotransferase system, maltose/glucose-specific subfamily IIC component CLD04_19840 IPR000292 Formate/nitrite transporter CLD04_19840 IPR023271 Aquaporin-like CLD04_19840 IPR024002 Formate/nitrite transporter, conserved site CLD04_19845 IPR011608 PRD domain CLD04_19845 IPR004341 CAT RNA-binding domain CLD04_19845 IPR036650 CAT RNA-binding domain superfamily CLD04_19845 IPR036634 PRD domain superfamily CLD04_19845 IPR001550 Transcription antiterminator, conserved site CLD04_19855 IPR000209 Peptidase S8/S53 domain CLD04_19855 IPR036852 Peptidase S8/S53 domain superfamily CLD04_19855 IPR003137 PA domain CLD04_19855 IPR023827 Peptidase S8, subtilisin, Asp-active site CLD04_19855 IPR025965 FlgD Ig-like domain CLD04_19855 IPR037045 Peptidase S8 propeptide/proteinase inhibitor I9 superfamily CLD04_19855 IPR022398 Peptidase S8, subtilisin, His-active site CLD04_19855 IPR023828 Peptidase S8, subtilisin, Ser-active site CLD04_19855 IPR015500 Peptidase S8, subtilisin-related CLD04_19855 IPR034213 Vpr-like peptidase, catalytic domain CLD04_19855 IPR010259 Peptidase S8 propeptide/proteinase inhibitor I9 CLD04_19860 IPR011251 Luciferase-like domain CLD04_19860 IPR019949 Luciferase family oxidoreductase, group 1 CLD04_19860 IPR036661 Luciferase-like domain superfamily CLD04_19865 IPR016446 Flavin oxidoreductase Frp family CLD04_19865 IPR000415 Nitroreductase-like CLD04_19865 IPR029479 Nitroreductase CLD04_19870 IPR018365 Cell cycle, FtsW / RodA / SpoVE, conserved site CLD04_19870 IPR011923 Probable peptidoglycan glycosyltransferase RodA/MrdB CLD04_19870 IPR001182 Probable peptidoglycan glycosyltransferase FtsW/RodA CLD04_19875 IPR020185 Spore morphogenesis/germination protein YwcE CLD04_19880 IPR014250 Quinol oxidase subunit IV CLD04_19880 IPR005171 Cytochrome C oxidase subunit IV, prokaryotes CLD04_19885 IPR033946 Ubiquinol oxidase subunit III domain CLD04_19885 IPR024791 Cytochrome c oxidase subunit III CLD04_19885 IPR013833 Cytochrome c oxidase, subunit III, 4-helical bundle CLD04_19885 IPR000298 Cytochrome c oxidase subunit III-like CLD04_19885 IPR014246 Quinol oxidase subunit III CLD04_19885 IPR035973 Cytochrome c oxidase subunit III-like superfamily CLD04_19890 IPR036927 Cytochrome c oxidase-like, subunit I superfamily CLD04_19890 IPR023615 Cytochrome c oxidase, subunit I, copper-binding site CLD04_19890 IPR014233 Quinol oxidase subunit I CLD04_19890 IPR023616 Cytochrome c oxidase-like, subunit I domain CLD04_19890 IPR000883 Cytochrome c oxidase subunit I CLD04_19895 IPR036257 Cytochrome C oxidase subunit II, transmembrane domain superfamily CLD04_19895 IPR002429 Cytochrome c oxidase subunit II-like C-terminal CLD04_19895 IPR008972 Cupredoxin CLD04_19895 IPR034227 Ubiquinol oxidase subunit 2, cupredoxin domain CLD04_19895 IPR011759 Cytochrome C oxidase subunit II, transmembrane domain CLD04_19895 IPR006333 Cytochrome o ubiquinol oxidase subunit II CLD04_19895 IPR006332 Quinol oxidase subunit II CLD04_19900 IPR007341 Transglycosylase-associated protein CLD04_19905 IPR005849 Galactose-1-phosphate uridyl transferase, N-terminal CLD04_19905 IPR023425 Galactose-1-phosphate uridyl transferase, class II, conserved site CLD04_19905 IPR000766 Galactose-1-phosphate uridyl transferase, class II CLD04_19905 IPR005850 Galactose-1-phosphate uridyl transferase, C-terminal CLD04_19910 IPR006206 Mevalonate/galactokinase CLD04_19910 IPR006203 GHMP kinase, ATP-binding, conserved site CLD04_19910 IPR006204 GHMP kinase N-terminal domain CLD04_19910 IPR013750 GHMP kinase, C-terminal domain CLD04_19910 IPR000705 Galactokinase CLD04_19910 IPR022963 Galactokinase, bacterial CLD04_19910 IPR036554 GHMP kinase, C-terminal domain superfamily CLD04_19910 IPR020568 Ribosomal protein S5 domain 2-type fold CLD04_19910 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLD04_19910 IPR019741 Galactokinase, conserved site CLD04_19910 IPR019539 Galactokinase galactose-binding domain CLD04_19915 IPR007267 GtrA-like protein CLD04_19920 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CLD04_19920 IPR001647 DNA-binding HTH domain, TetR-type CLD04_19920 IPR009057 Homeobox-like domain superfamily CLD04_19925 IPR036281 SinR repressor/SinI anti-repressor, dimerisation domain superfamily CLD04_19925 IPR010981 SinR repressor/SinI anti-repressor, dimerisation domain CLD04_19930 IPR007436 Protein of unknown function DUF485 CLD04_19935 IPR038377 Sodium/glucose symporter superfamily CLD04_19935 IPR018212 Sodium/solute symporter, conserved site CLD04_19935 IPR001734 Sodium/solute symporter CLD04_19940 IPR001853 DSBA-like thioredoxin domain CLD04_19940 IPR036249 Thioredoxin-like superfamily CLD04_19945 IPR006311 Twin-arginine translocation pathway, signal sequence CLD04_19945 IPR019546 Twin-arginine translocation pathway, signal sequence, bacterial/archaeal CLD04_19945 IPR006313 Deferrochelatase/peroxidase EfeB CLD04_19945 IPR006314 Dyp-type peroxidase CLD04_19945 IPR011008 Dimeric alpha-beta barrel CLD04_19950 IPR034981 EfeO/Algp7, imelysin-like domain CLD04_19950 IPR018976 Imelysin-like domain CLD04_19950 IPR038352 Imelysin-like domain superfamily CLD04_19955 IPR004923 Iron permease FTR1/Fip1/EfeU CLD04_19965 IPR022998 Thiamine phosphate synthase/TenI CLD04_19965 IPR034291 Thiamine phosphate synthase CLD04_19965 IPR013785 Aldolase-type TIM barrel CLD04_19965 IPR036206 Thiamin phosphate synthase superfamily CLD04_19970 IPR000417 Hydroxyethylthiazole kinase CLD04_19970 IPR029056 Ribokinase-like CLD04_19975 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_19975 IPR000847 Transcription regulator HTH, LysR CLD04_19975 IPR005119 LysR, substrate-binding CLD04_19975 IPR036390 Winged helix DNA-binding domain superfamily CLD04_19980 IPR023760 Holin-like protein CidA CLD04_19980 IPR005538 LrgA/CidA family CLD04_19985 IPR005261 Conserved hypothetical protein CHP00659 CLD04_19985 IPR007300 CidB/LrgB family CLD04_19990 IPR036259 MFS transporter superfamily CLD04_19990 IPR020846 Major facilitator superfamily domain CLD04_19990 IPR024989 Major facilitator superfamily associated domain CLD04_19990 IPR026032 Probable 3-phenylpropionic acid transporter CLD04_19995 IPR019240 Protein of unknown function DUF2196 CLD04_20000 IPR036974 PUA domain superfamily CLD04_20000 IPR002478 PUA domain CLD04_20000 IPR015947 PUA-like superfamily CLD04_20000 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_20000 IPR019614 S-adenosylmethionine-dependent methyltransferase CLD04_20000 IPR041532 RlmI, PUA-like domain CLD04_20005 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CLD04_20005 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CLD04_20005 IPR037523 Vicinal oxygen chelate (VOC) domain CLD04_20005 IPR018146 Glyoxalase I, conserved site CLD04_20010 IPR003352 Phosphotransferase system, EIIC CLD04_20010 IPR004796 Phosphotransferase system, cellobiose-type IIC component CLD04_20010 IPR004501 Phosphotransferase system, EIIC component, type 3 CLD04_20015 IPR015500 Peptidase S8, subtilisin-related CLD04_20015 IPR000209 Peptidase S8/S53 domain CLD04_20015 IPR036852 Peptidase S8/S53 domain superfamily CLD04_20015 IPR037045 Peptidase S8 propeptide/proteinase inhibitor I9 superfamily CLD04_20015 IPR041909 Sbi, C3 binding domain IV CLD04_20015 IPR034202 Subtilisin Carlsberg-like catalytic domain CLD04_20015 IPR023827 Peptidase S8, subtilisin, Asp-active site CLD04_20015 IPR022398 Peptidase S8, subtilisin, His-active site CLD04_20015 IPR023828 Peptidase S8, subtilisin, Ser-active site CLD04_20020 IPR036878 Glucose permease domain IIB CLD04_20020 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site CLD04_20020 IPR001996 Phosphotransferase system, IIB component, type 1 CLD04_20020 IPR013013 Phosphotransferase system, EIIC component, type 1 CLD04_20020 IPR003352 Phosphotransferase system, EIIC CLD04_20020 IPR010973 Phosphotransferase system, sucrose-specific IIBC component CLD04_20025 IPR001550 Transcription antiterminator, conserved site CLD04_20025 IPR036634 PRD domain superfamily CLD04_20025 IPR011608 PRD domain CLD04_20025 IPR004341 CAT RNA-binding domain CLD04_20025 IPR036650 CAT RNA-binding domain superfamily CLD04_20030 IPR029044 Nucleotide-diphospho-sugar transferases CLD04_20030 IPR002495 Glycosyl transferase, family 8 CLD04_20035 IPR011737 Conserved hypothetical protein CHP02206, TP0381 CLD04_20040 IPR023187 Transcriptional regulator MarR-type, conserved site CLD04_20040 IPR036390 Winged helix DNA-binding domain superfamily CLD04_20040 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_20040 IPR000835 MarR-type HTH domain CLD04_20050 IPR003137 PA domain CLD04_20050 IPR007484 Peptidase M28 CLD04_20065 IPR020846 Major facilitator superfamily domain CLD04_20065 IPR011701 Major facilitator superfamily CLD04_20065 IPR036259 MFS transporter superfamily CLD04_20070 IPR007685 RelA/SpoT CLD04_20080 IPR012337 Ribonuclease H-like superfamily CLD04_20080 IPR036397 Ribonuclease H superfamily CLD04_20080 IPR038965 Transposase InsF-like CLD04_20080 IPR001584 Integrase, catalytic core CLD04_20085 IPR004657 1,4-dihydroxy-2-naphthoate octaprenyltransferase CLD04_20085 IPR000537 UbiA prenyltransferase family CLD04_20085 IPR026046 UbiA prenyltransferase domain containing protein 1 CLD04_20095 IPR021008 Protein of unknown function DUF3687 CLD04_20100 IPR042099 AMP-dependent synthetase-like superfamily CLD04_20100 IPR010072 D-alanine--D-alanyl carrier protein ligase CLD04_20100 IPR010071 Amino acid adenylation domain CLD04_20100 IPR025110 AMP-binding enzyme, C-terminal domain CLD04_20100 IPR000873 AMP-dependent synthetase/ligase CLD04_20100 IPR020845 AMP-binding, conserved site CLD04_20105 IPR024194 Alginate O-acetyltransferase AlgI/D-alanyl transfer protein DltB CLD04_20105 IPR024024 D-alanyl transfer protein DltB CLD04_20105 IPR004299 Membrane bound O-acyl transferase, MBOAT CLD04_20110 IPR009081 Phosphopantetheine binding ACP domain CLD04_20110 IPR003230 D-alanyl carrier protein CLD04_20110 IPR036736 ACP-like superfamily CLD04_20115 IPR023896 D-alanyl-lipoteichoic acid biosynthesis DltD, Firmicutes CLD04_20115 IPR006998 DltD CLD04_20120 IPR036291 NAD(P)-binding domain superfamily CLD04_20120 IPR020904 Short-chain dehydrogenase/reductase, conserved site CLD04_20120 IPR002347 Short-chain dehydrogenase/reductase SDR CLD04_20125 IPR018300 Aminotransferase, class IV, conserved site CLD04_20125 IPR005786 Branched-chain amino acid aminotransferase II CLD04_20125 IPR036038 Aminotransferase-like, PLP-dependent enzymes CLD04_20125 IPR033939 Branched-chain aminotransferase CLD04_20125 IPR001544 Aminotransferase class IV CLD04_20130 IPR001088 Glycoside hydrolase, family 4 CLD04_20130 IPR036291 NAD(P)-binding domain superfamily CLD04_20130 IPR015955 Lactate dehydrogenase/glycoside hydrolase, family 4, C-terminal CLD04_20130 IPR022616 Glycosyl hydrolase, family 4, C-terminal CLD04_20130 IPR019802 Glycoside hydrolase, family 4, conserved site CLD04_20135 IPR036542 Phosphotransferase system, lactose/cellobiose-type IIA subunit superfamily CLD04_20135 IPR003188 Phosphotransferase system, lactose/cellobiose-type IIA subunit CLD04_20140 IPR004501 Phosphotransferase system, EIIC component, type 3 CLD04_20140 IPR004796 Phosphotransferase system, cellobiose-type IIC component CLD04_20140 IPR003352 Phosphotransferase system, EIIC CLD04_20145 IPR036095 PTS system IIB component-like superfamily CLD04_20145 IPR013012 Phosphotransferase system, EIIB component, type 3 CLD04_20145 IPR003501 Phosphotransferase system, EIIB component, type 2/3 CLD04_20150 IPR013196 Helix-turn-helix, type 11 CLD04_20150 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_20150 IPR013011 Phosphotransferase system, EIIB component, type 2 CLD04_20150 IPR036095 PTS system IIB component-like superfamily CLD04_20150 IPR002178 PTS EIIA type-2 domain CLD04_20150 IPR007737 Mga helix-turn-helix domain CLD04_20150 IPR011608 PRD domain CLD04_20150 IPR036634 PRD domain superfamily CLD04_20150 IPR016152 Phosphotransferase/anion transporter CLD04_20150 IPR036390 Winged helix DNA-binding domain superfamily CLD04_20160 IPR003180 Methylpurine-DNA glycosylase CLD04_20160 IPR011034 Formyl transferase-like, C-terminal domain superfamily CLD04_20160 IPR036995 Methylpurine-DNA glycosylase superfamily CLD04_20165 IPR037060 Catalase core domain superfamily CLD04_20165 IPR024708 Catalase active site CLD04_20165 IPR024711 Catalase, mono-functional, haem-containing, clades 1 and 3 CLD04_20165 IPR011614 Catalase core domain CLD04_20165 IPR002226 Catalase haem-binding site CLD04_20165 IPR010582 Catalase immune-responsive domain CLD04_20165 IPR020835 Catalase superfamily CLD04_20165 IPR018028 Catalase, mono-functional, haem-containing CLD04_20170 IPR001958 Tetracycline resistance protein TetA/multidrug resistance protein MdtG CLD04_20170 IPR036259 MFS transporter superfamily CLD04_20170 IPR011701 Major facilitator superfamily CLD04_20170 IPR020846 Major facilitator superfamily domain CLD04_20180 IPR025302 Domain of unknown function DUF4162 CLD04_20180 IPR017871 ABC transporter, conserved site CLD04_20180 IPR003439 ABC transporter-like CLD04_20180 IPR003593 AAA+ ATPase domain CLD04_20180 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_20185 IPR027379 Cardiolipin synthase N-terminal CLD04_20195 IPR035238 Protein of unknown function DUF5345 CLD04_20200 IPR014284 RNA polymerase sigma-70 like domain CLD04_20200 IPR013249 RNA polymerase sigma factor 70, region 4 type 2 CLD04_20200 IPR000838 RNA polymerase sigma factor 70, ECF, conserved site CLD04_20200 IPR007627 RNA polymerase sigma-70 region 2 CLD04_20200 IPR013325 RNA polymerase sigma factor, region 2 CLD04_20200 IPR039425 RNA polymerase sigma-70 like CLD04_20200 IPR013324 RNA polymerase sigma factor, region 3/4-like CLD04_20200 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_20205 IPR038271 Purine-cytosine permease superfamily CLD04_20205 IPR026030 Purine-cytosine permease Fcy2/21/22 CLD04_20205 IPR001248 Purine-cytosine permease CLD04_20210 IPR000631 ATP-dependent (S)-NAD(P)H-hydrate dehydratase CLD04_20210 IPR017953 Carbohydrate kinase, predicted, conserved site CLD04_20210 IPR029056 Ribokinase-like CLD04_20215 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_20215 IPR017871 ABC transporter, conserved site CLD04_20215 IPR003439 ABC transporter-like CLD04_20215 IPR003593 AAA+ ATPase domain CLD04_20215 IPR014223 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC CLD04_20215 IPR036640 ABC transporter type 1, transmembrane domain superfamily CLD04_20215 IPR011527 ABC transporter type 1, transmembrane domain CLD04_20220 IPR036640 ABC transporter type 1, transmembrane domain superfamily CLD04_20220 IPR003593 AAA+ ATPase domain CLD04_20220 IPR039421 Type I protein exporter CLD04_20220 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_20220 IPR014216 ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD CLD04_20220 IPR017871 ABC transporter, conserved site CLD04_20220 IPR003439 ABC transporter-like CLD04_20220 IPR011527 ABC transporter type 1, transmembrane domain CLD04_20225 IPR003317 Cytochrome ubiquinol oxidase subunit 2 CLD04_20230 IPR002585 Cytochrome ubiquinol oxidase subunit 1 CLD04_20235 IPR004679 2-hydroxycarboxylate transporter CLD04_20235 IPR018025 2-hydroxycarboxylate transporter, Proteobacteria/Firmicutes CLD04_20240 IPR001915 Peptidase M48 CLD04_20250 IPR011330 Glycoside hydrolase/deacetylase, beta/alpha-barrel CLD04_20250 IPR002509 NodB homology domain CLD04_20255 IPR003439 ABC transporter-like CLD04_20255 IPR005116 Transport-associated OB, type 1 CLD04_20255 IPR003593 AAA+ ATPase domain CLD04_20255 IPR017871 ABC transporter, conserved site CLD04_20255 IPR008995 Molybdate/tungstate binding, C-terminal CLD04_20255 IPR040582 MalK, OB fold domain CLD04_20255 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_20260 IPR025736 PucR C-terminal helix-turn-helix domain CLD04_20260 IPR042070 PucR C-terminal helix-turn-helix domain superfamily CLD04_20265 IPR016162 Aldehyde dehydrogenase, N-terminal CLD04_20265 IPR029510 Aldehyde dehydrogenase, glutamic acid active site CLD04_20265 IPR016163 Aldehyde dehydrogenase, C-terminal CLD04_20265 IPR016161 Aldehyde/histidinol dehydrogenase CLD04_20265 IPR015590 Aldehyde dehydrogenase domain CLD04_20270 IPR003740 Uncharacterised membrane protein YitT CLD04_20270 IPR015867 Nitrogen regulatory protein PII/ATP phosphoribosyltransferase, C-terminal CLD04_20270 IPR019264 Domain of unknown function DUF2179 CLD04_20275 IPR029050 Immunoprotective extracellular, immunoglobulin-like domain superfamily CLD04_20275 IPR029051 Domain of unknown function DUF4352 CLD04_20280 IPR036291 NAD(P)-binding domain superfamily CLD04_20280 IPR005886 UDP-glucose 4-epimerase CLD04_20280 IPR016040 NAD(P)-binding domain CLD04_20290 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_20290 IPR011712 Signal transduction histidine kinase, subgroup 3, dimerisation and phosphoacceptor domain CLD04_20295 IPR011006 CheY-like superfamily CLD04_20295 IPR016032 Signal transduction response regulator, C-terminal effector CLD04_20295 IPR001789 Signal transduction response regulator, receiver domain CLD04_20295 IPR000792 Transcription regulator LuxR, C-terminal CLD04_20300 IPR001261 ArgE/DapE/ACY1/CPG2/YscS, conserved site CLD04_20300 IPR036264 Bacterial exopeptidase dimerisation domain CLD04_20300 IPR002933 Peptidase M20 CLD04_20300 IPR011650 Peptidase M20, dimerisation domain CLD04_20300 IPR010161 Peptidase M20B, tripeptide aminopeptidase CLD04_20310 IPR025659 Tubby-like, C-terminal CLD04_20310 IPR038595 LURP-one-related superfamily CLD04_20310 IPR007612 LURP-one-related CLD04_20315 IPR038071 UROD/MetE-like superfamily CLD04_20315 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal CLD04_20320 IPR038071 UROD/MetE-like superfamily CLD04_20320 IPR002629 Cobalamin-independent methionine synthase MetE, C-terminal/archaeal CLD04_20330 IPR004164 Coenzyme A transferase active site CLD04_20330 IPR037171 NagB/RpiA transferase-like CLD04_20330 IPR004165 Coenzyme A transferase family I CLD04_20330 IPR012791 3-oxoacid CoA-transferase, subunit B CLD04_20335 IPR037171 NagB/RpiA transferase-like CLD04_20335 IPR004165 Coenzyme A transferase family I CLD04_20335 IPR004163 Coenzyme A transferase binding site CLD04_20335 IPR012792 3-oxoacid CoA-transferase, subunit A CLD04_20340 IPR003474 Gluconate transporter CLD04_20345 IPR016718 rRNA (guanine-N1-)-methyltransferase A, predicted CLD04_20345 IPR013216 Methyltransferase type 11 CLD04_20345 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_20355 IPR001736 Phospholipase D/Transphosphatidylase CLD04_20355 IPR025202 Phospholipase D-like domain CLD04_20355 IPR027379 Cardiolipin synthase N-terminal CLD04_20355 IPR022924 Cardiolipin synthase CLD04_20355 IPR030874 Cardiolipin synthase, Firmicutes-type CLD04_20365 IPR023090 UPF0702, alpha/beta domain superfamily CLD04_20365 IPR007353 Protein of unknown function DUF421 CLD04_20375 IPR005562 SpoVA CLD04_20375 IPR014204 Sporulation stage V, protein AE CLD04_20380 IPR038369 Stage V sporulation AD superfamily CLD04_20380 IPR010894 Stage V sporulation AD CLD04_20380 IPR016039 Thiolase-like CLD04_20385 IPR005562 SpoVA CLD04_20385 IPR014203 Sporulation stage V, protein AC CLD04_20440 IPR036680 Sporulation-like domain superfamily CLD04_20440 IPR007730 Sporulation-like domain CLD04_20440 IPR002508 N-acetylmuramoyl-L-alanine amidase, catalytic domain CLD04_20450 IPR025296 Domain of unknown function DUF4158 CLD04_20450 IPR002513 Tn3 transposase DDE domain CLD04_20455 IPR025296 Domain of unknown function DUF4158 CLD04_20455 IPR002513 Tn3 transposase DDE domain CLD04_20460 IPR002668 Concentrative nucleoside transporter N-terminal domain CLD04_20460 IPR011657 Concentrative nucleoside transporter C-terminal domain CLD04_20460 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial CLD04_20460 IPR008276 Concentrative nucleoside transporter CLD04_20475 IPR024708 Catalase active site CLD04_20475 IPR018028 Catalase, mono-functional, haem-containing CLD04_20475 IPR024712 Catalase, mono-functional, haem-containing, clade 2 CLD04_20475 IPR020835 Catalase superfamily CLD04_20475 IPR041399 Large catalase, C-terminal domain CLD04_20475 IPR010582 Catalase immune-responsive domain CLD04_20475 IPR002226 Catalase haem-binding site CLD04_20475 IPR037060 Catalase core domain superfamily CLD04_20475 IPR029062 Class I glutamine amidotransferase-like CLD04_20475 IPR011614 Catalase core domain CLD04_20480 IPR004680 Citrate transporter-like domain CLD04_20480 IPR014738 Citrate transporter CLD04_20505 IPR036259 MFS transporter superfamily CLD04_20505 IPR020846 Major facilitator superfamily domain CLD04_20505 IPR024671 Autophagy-related protein 22-like CLD04_20510 IPR005580 DEAD box helicase DbpA/CsdA, RNA-binding domain CLD04_20510 IPR011545 DEAD/DEAH box helicase domain CLD04_20510 IPR028619 ATP-dependent RNA helicase DbpA CLD04_20510 IPR001650 Helicase, C-terminal CLD04_20510 IPR014014 RNA helicase, DEAD-box type, Q motif CLD04_20510 IPR000629 ATP-dependent RNA helicase DEAD-box, conserved site CLD04_20510 IPR012677 Nucleotide-binding alpha-beta plait domain superfamily CLD04_20510 IPR014001 Helicase superfamily 1/2, ATP-binding domain CLD04_20510 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_20515 IPR013830 SGNH hydrolase-type esterase domain CLD04_20515 IPR037459 Rhamnogalacturonan acetylesterase RhgT-like CLD04_20515 IPR008979 Galactose-binding-like domain superfamily CLD04_20515 IPR036514 SGNH hydrolase superfamily CLD04_20535 IPR025551 Immunity protein WapI-like CLD04_20540 IPR020323 Protein of unknown function DUF2716 CLD04_20570 IPR006530 YD repeat CLD04_20570 IPR031325 RHS repeat CLD04_20570 IPR008979 Galactose-binding-like domain superfamily CLD04_20570 IPR022385 Rhs repeat-associated core CLD04_20575 IPR000620 EamA domain CLD04_20580 IPR006016 UspA CLD04_20580 IPR014729 Rossmann-like alpha/beta/alpha sandwich fold CLD04_20580 IPR006015 Universal stress protein A family CLD04_20585 IPR001360 Glycoside hydrolase family 1 CLD04_20585 IPR018120 Glycoside hydrolase family 1, active site CLD04_20585 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site CLD04_20585 IPR017853 Glycoside hydrolase superfamily CLD04_20590 IPR011055 Duplicated hybrid motif CLD04_20590 IPR036878 Glucose permease domain IIB CLD04_20590 IPR003352 Phosphotransferase system, EIIC CLD04_20590 IPR001127 Phosphotransferase system, sugar-specific permease EIIA type 1 CLD04_20590 IPR013013 Phosphotransferase system, EIIC component, type 1 CLD04_20590 IPR011297 Phosphotransferase system, beta-glucoside-specific IIABC component CLD04_20590 IPR001996 Phosphotransferase system, IIB component, type 1 CLD04_20590 IPR018113 Phosphotransferase system EIIB, cysteine phosphorylation site CLD04_20600 IPR027797 Pre-toxin TG domain CLD04_20600 IPR003615 HNH nuclease CLD04_20600 IPR006829 LXG domain CLD04_20610 IPR031681 Domain of unknown function DUF5082 CLD04_20620 IPR018117 DNA methylase, C-5 cytosine-specific, active site CLD04_20620 IPR001525 C-5 cytosine methyltransferase CLD04_20620 IPR031303 DNA methylase, C-5 cytosine-specific, conserved site CLD04_20620 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_20630 IPR023296 Glycosyl hydrolase, five-bladed beta-propellor domain superfamily CLD04_20630 IPR032291 Extracellular endo-alpha-(1->5)-L-arabinanase, C-terminal CLD04_20630 IPR006710 Glycoside hydrolase, family 43 CLD04_20640 IPR005920 Imidazolonepropionase CLD04_20640 IPR011059 Metal-dependent hydrolase, composite domain superfamily CLD04_20640 IPR032466 Metal-dependent hydrolase CLD04_20640 IPR006680 Amidohydrolase-related CLD04_20645 IPR005923 Formiminoglutamase CLD04_20645 IPR006035 Ureohydrolase CLD04_20645 IPR023696 Ureohydrolase domain superfamily CLD04_20645 IPR020855 Ureohydrolase, manganese-binding site CLD04_20650 IPR004840 Amino acid permease, conserved site CLD04_20650 IPR004841 Amino acid permease/ SLC12A domain CLD04_20655 IPR000053 Thymidine/pyrimidine-nucleoside phosphorylase CLD04_20655 IPR017872 Pyrimidine-nucleoside phosphorylase, conserved site CLD04_20655 IPR018090 Pyrimidine-nucleoside phosphorylase, bacterial/eukaryotic CLD04_20655 IPR013102 Pyrimidine nucleoside phosphorylase, C-terminal CLD04_20655 IPR036566 Pyrimidine nucleoside phosphorylase-like, C-terminal domain superfamily CLD04_20655 IPR035902 Nucleoside phosphorylase/phosphoribosyltransferase catalytic domain superfamily CLD04_20655 IPR036320 Glycosyl transferase family 3, N-terminal domain superfamily CLD04_20655 IPR017459 Glycosyl transferase family 3, N-terminal domain CLD04_20655 IPR000312 Glycosyl transferase, family 3 CLD04_20660 IPR002668 Concentrative nucleoside transporter N-terminal domain CLD04_20660 IPR011657 Concentrative nucleoside transporter C-terminal domain CLD04_20660 IPR008276 Concentrative nucleoside transporter CLD04_20660 IPR018270 Concentrative nucleoside transporter, metazoan/bacterial CLD04_20665 IPR028581 Deoxyribose-phosphate aldolase type I CLD04_20665 IPR013785 Aldolase-type TIM barrel CLD04_20665 IPR011343 Deoxyribose-phosphate aldolase CLD04_20665 IPR002915 DeoC/FbaB/ lacD aldolase CLD04_20670 IPR037171 NagB/RpiA transferase-like CLD04_20670 IPR013324 RNA polymerase sigma factor, region 3/4-like CLD04_20670 IPR007324 Sugar-binding domain, putative CLD04_20680 IPR007441 Ethanolamine utilisation protein EutH CLD04_20685 IPR036148 MmgE/PrpD superfamily CLD04_20685 IPR042183 MmgE/PrpD superfamily, domain 1 CLD04_20685 IPR042188 MmgE/PrpD superfamily, domain 2 CLD04_20685 IPR005656 MmgE/PrpD CLD04_20695 IPR003439 ABC transporter-like CLD04_20695 IPR030679 ABC-type amino acid transport system, ATPase component, HisP-type CLD04_20695 IPR003593 AAA+ ATPase domain CLD04_20695 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_20695 IPR017871 ABC transporter, conserved site CLD04_20700 IPR035906 MetI-like superfamily CLD04_20700 IPR000515 ABC transporter type 1, transmembrane domain MetI-like CLD04_20700 IPR010065 Amino acid ABC transporter, permease protein, 3-TM domain CLD04_20705 IPR018313 Solute-binding protein family 3, conserved site CLD04_20705 IPR001638 Solute-binding protein family 3/N-terminal domain of MltF CLD04_20720 IPR029055 Nucleophile aminohydrolases, N-terminal CLD04_20720 IPR029132 Choloylglycine hydrolase/NAAA C-terminal CLD04_20725 IPR023214 HAD superfamily CLD04_20725 IPR006379 HAD-superfamily hydrolase, subfamily IIB CLD04_20725 IPR036412 HAD-like superfamily CLD04_20725 IPR000150 Cof family CLD04_20735 IPR021664 Protein of unknown function DUF3255 CLD04_20735 IPR012674 Calycin CLD04_20755 IPR002491 ABC transporter periplasmic binding domain CLD04_20760 IPR036166 YxeA-like superfamily CLD04_20760 IPR006542 Protein of unknown function DUF1093 CLD04_20765 IPR003838 ABC transporter permease protein domain CLD04_20765 IPR027022 ABC transporter permease protein, BceB-type CLD04_20770 IPR003439 ABC transporter-like CLD04_20770 IPR017871 ABC transporter, conserved site CLD04_20770 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_20770 IPR003593 AAA+ ATPase domain CLD04_20775 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLD04_20775 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_20775 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLD04_20775 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_20775 IPR005467 Histidine kinase domain CLD04_20780 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_20780 IPR039420 Transcriptional regulatory protein WalR-like CLD04_20780 IPR001789 Signal transduction response regulator, receiver domain CLD04_20780 IPR016032 Signal transduction response regulator, C-terminal effector CLD04_20780 IPR011006 CheY-like superfamily CLD04_20780 IPR001867 OmpR/PhoB-type DNA-binding domain CLD04_20785 IPR000771 Fructose-bisphosphate aldolase, class-II CLD04_20785 IPR013785 Aldolase-type TIM barrel CLD04_20785 IPR011289 Fructose-1,6-bisphosphate aldolase, class 2 CLD04_20790 IPR013022 Xylose isomerase-like, TIM barrel domain CLD04_20790 IPR036237 Xylose isomerase-like superfamily CLD04_20795 IPR036237 Xylose isomerase-like superfamily CLD04_20795 IPR013022 Xylose isomerase-like, TIM barrel domain CLD04_20800 IPR036291 NAD(P)-binding domain superfamily CLD04_20800 IPR000683 Oxidoreductase, N-terminal CLD04_20800 IPR023794 Inositol 2-dehydrogenase/D-chiro-inositol 3-dehydrogenase CLD04_20800 IPR004104 Oxidoreductase, C-terminal CLD04_20805 IPR036259 MFS transporter superfamily CLD04_20805 IPR020846 Major facilitator superfamily domain CLD04_20805 IPR011701 Major facilitator superfamily CLD04_20805 IPR005829 Sugar transporter, conserved site CLD04_20810 IPR023952 Inosose dehydratase CLD04_20810 IPR036237 Xylose isomerase-like superfamily CLD04_20810 IPR030823 IolE/MocC family CLD04_20810 IPR013022 Xylose isomerase-like, TIM barrel domain CLD04_20815 IPR030817 3,5/4-Trihydroxycyclohexa-1,2-dione hydrolase CLD04_20815 IPR029061 Thiamin diphosphate-binding fold CLD04_20815 IPR012000 Thiamine pyrophosphate enzyme, central domain CLD04_20815 IPR012001 Thiamine pyrophosphate enzyme, N-terminal TPP-binding domain CLD04_20815 IPR023757 3D-(3,5/4)-trihydroxycyclohexane-1,2-dione hydrolase, Firmicutes CLD04_20815 IPR011766 Thiamine pyrophosphate enzyme, C-terminal TPP-binding CLD04_20815 IPR000399 TPP-binding enzyme, conserved site CLD04_20815 IPR029035 DHS-like NAD/FAD-binding domain superfamily CLD04_20820 IPR029056 Ribokinase-like CLD04_20820 IPR011611 Carbohydrate kinase PfkB CLD04_20820 IPR023314 5-Dehydro-2-deoxygluconokinase-like superfamily CLD04_20820 IPR030830 5-Dehydro-2-deoxygluconokinase CLD04_20820 IPR022841 5-dehydro-2-deoxygluconokinase, Firmicutes CLD04_20820 IPR002173 Carbohydrate/puine kinase, PfkB, conserved site CLD04_20825 IPR024203 5-deoxy-glucuronate isomerase, IolB CLD04_20825 IPR023770 5-deoxy-glucuronate isomerase, Bacilli CLD04_20825 IPR021120 KduI/IolB isomerase CLD04_20825 IPR014710 RmlC-like jelly roll fold CLD04_20825 IPR011051 RmlC-like cupin domain superfamily CLD04_20830 IPR016160 Aldehyde dehydrogenase, cysteine active site CLD04_20830 IPR023510 Methylmalonate-semialdehyde dehydrogenase, Gram-positive bacteria CLD04_20830 IPR010061 Methylmalonate-semialdehyde dehydrogenase CLD04_20830 IPR015590 Aldehyde dehydrogenase domain CLD04_20830 IPR016162 Aldehyde dehydrogenase, N-terminal CLD04_20830 IPR016163 Aldehyde dehydrogenase, C-terminal CLD04_20830 IPR016161 Aldehyde/histidinol dehydrogenase CLD04_20835 IPR018356 Transcription regulator, HTH DeoR-type, conserved site CLD04_20835 IPR037171 NagB/RpiA transferase-like CLD04_20835 IPR001034 DeoR-type HTH domain CLD04_20835 IPR014036 DeoR C-terminal sensor domain CLD04_20835 IPR036390 Winged helix DNA-binding domain superfamily CLD04_20835 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_20840 IPR020471 Aldo/keto reductase CLD04_20840 IPR023210 NADP-dependent oxidoreductase domain CLD04_20840 IPR036812 NADP-dependent oxidoreductase domain superfamily CLD04_20840 IPR018170 Aldo/keto reductase, conserved site CLD04_20850 IPR020516 Uncharacterised protein family YxcD CLD04_20855 IPR036259 MFS transporter superfamily CLD04_20855 IPR003663 Sugar/inositol transporter CLD04_20855 IPR005829 Sugar transporter, conserved site CLD04_20855 IPR005828 Major facilitator, sugar transporter-like CLD04_20855 IPR020846 Major facilitator superfamily domain CLD04_20860 IPR037196 HSP90, C-terminal domain CLD04_20860 IPR020568 Ribosomal protein S5 domain 2-type fold CLD04_20860 IPR020575 Heat shock protein Hsp90, N-terminal CLD04_20860 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_20860 IPR001404 Heat shock protein Hsp90 family CLD04_20860 IPR019805 Heat shock protein Hsp90, conserved site CLD04_20860 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_20875 IPR001647 DNA-binding HTH domain, TetR-type CLD04_20875 IPR009057 Homeobox-like domain superfamily CLD04_20880 IPR012394 Aldehyde dehydrogenase NAD(P)-dependent CLD04_20880 IPR016161 Aldehyde/histidinol dehydrogenase CLD04_20880 IPR015590 Aldehyde dehydrogenase domain CLD04_20880 IPR029510 Aldehyde dehydrogenase, glutamic acid active site CLD04_20880 IPR016162 Aldehyde dehydrogenase, N-terminal CLD04_20880 IPR016163 Aldehyde dehydrogenase, C-terminal CLD04_20880 IPR016160 Aldehyde dehydrogenase, cysteine active site CLD04_20885 IPR010432 RDD CLD04_20890 IPR018391 Pyrrolo-quinoline quinone beta-propeller repeat CLD04_20890 IPR025666 Pyrrolo-quinoline quinone-like domain CLD04_20890 IPR002372 Pyrrolo-quinoline quinone repeat CLD04_20890 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily CLD04_20890 IPR015943 WD40/YVTN repeat-like-containing domain superfamily CLD04_20895 IPR020204 Uncharacterised protein family, YxaJ CLD04_20900 IPR010432 RDD CLD04_20910 IPR013096 Cupin 2, conserved barrel CLD04_20910 IPR014710 RmlC-like jelly roll fold CLD04_20910 IPR011051 RmlC-like cupin domain superfamily CLD04_20915 IPR009057 Homeobox-like domain superfamily CLD04_20915 IPR001647 DNA-binding HTH domain, TetR-type CLD04_20915 IPR036271 Tetracyclin repressor-like, C-terminal domain superfamily CLD04_20920 IPR002347 Short-chain dehydrogenase/reductase SDR CLD04_20920 IPR020904 Short-chain dehydrogenase/reductase, conserved site CLD04_20920 IPR036291 NAD(P)-binding domain superfamily CLD04_20925 IPR023187 Transcriptional regulator MarR-type, conserved site CLD04_20925 IPR000835 MarR-type HTH domain CLD04_20925 IPR036390 Winged helix DNA-binding domain superfamily CLD04_20925 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_20930 IPR005538 LrgA/CidA family CLD04_20935 IPR007300 CidB/LrgB family CLD04_20945 IPR007345 Polysaccharide pyruvyl transferase CLD04_20950 IPR004381 Glycerate kinase CLD04_20950 IPR018193 Glycerate kinase, flavodoxin-like fold CLD04_20950 IPR018197 Glycerate kinase, restriction-enzyme-like fold CLD04_20950 IPR036129 Glycerate kinase superfamily CLD04_20955 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_20955 IPR011711 GntR, C-terminal CLD04_20955 IPR008920 Transcription regulator FadR/GntR, C-terminal CLD04_20955 IPR000524 Transcription regulator HTH, GntR CLD04_20955 IPR036390 Winged helix DNA-binding domain superfamily CLD04_20960 IPR018485 Carbohydrate kinase, FGGY, C-terminal CLD04_20960 IPR018483 Carbohydrate kinase, FGGY, conserved site CLD04_20960 IPR006002 Gluconate kinase CLD04_20960 IPR000577 Carbohydrate kinase, FGGY CLD04_20960 IPR018484 Carbohydrate kinase, FGGY, N-terminal CLD04_20965 IPR003474 Gluconate transporter CLD04_20970 IPR008927 6-phosphogluconate dehydrogenase-like, C-terminal domain superfamily CLD04_20970 IPR006113 6-phosphogluconate dehydrogenase, decarboxylating CLD04_20970 IPR006184 6-phosphogluconate-binding site CLD04_20970 IPR036291 NAD(P)-binding domain superfamily CLD04_20970 IPR006183 6-phosphogluconate dehydrogenase CLD04_20970 IPR006114 6-phosphogluconate dehydrogenase, C-terminal CLD04_20970 IPR013328 6-phosphogluconate dehydrogenase, domain 2 CLD04_20970 IPR006115 6-phosphogluconate dehydrogenase, NADP-binding CLD04_20975 IPR013766 Thioredoxin domain CLD04_20975 IPR024706 Peroxiredoxin, AhpC-type CLD04_20975 IPR000866 Alkyl hydroperoxide reductase subunit C/ Thiol specific antioxidant CLD04_20975 IPR036249 Thioredoxin-like superfamily CLD04_20975 IPR017559 Alkyl hydroperoxide reductase subunit C CLD04_20980 IPR012081 Alkyl hydroperoxide reductase subunit F CLD04_20980 IPR036188 FAD/NAD(P)-binding domain superfamily CLD04_20980 IPR002109 Glutaredoxin CLD04_20980 IPR008255 Pyridine nucleotide-disulphide oxidoreductase, class-II, active site CLD04_20980 IPR012336 Thioredoxin-like fold CLD04_20980 IPR036249 Thioredoxin-like superfamily CLD04_20980 IPR023753 FAD/NAD(P)-binding domain CLD04_20985 IPR018120 Glycoside hydrolase family 1, active site CLD04_20985 IPR017853 Glycoside hydrolase superfamily CLD04_20985 IPR001360 Glycoside hydrolase family 1 CLD04_20985 IPR033132 Glycosyl hydrolases family 1, N-terminal conserved site CLD04_21000 IPR028978 Chorismate pyruvate-lyase/UbiC transcription regulator-associated domain superfamily CLD04_21000 IPR036390 Winged helix DNA-binding domain superfamily CLD04_21000 IPR000524 Transcription regulator HTH, GntR CLD04_21000 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_21000 IPR011663 UbiC transcription regulator-associated CLD04_21015 IPR003439 ABC transporter-like CLD04_21015 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_21015 IPR003593 AAA+ ATPase domain CLD04_21020 IPR009164 Fructose-1,6-bisphosphatase class 3 CLD04_21035 IPR003742 RNA methyltransferase RlmH CLD04_21035 IPR029028 Alpha/beta knot methyltransferases CLD04_21035 IPR029026 tRNA (guanine-N1-)-methyltransferase, N-terminal CLD04_21040 IPR025626 YyzF-like protein CLD04_21050 IPR013149 Alcohol dehydrogenase, C-terminal CLD04_21050 IPR002328 Alcohol dehydrogenase, zinc-type, conserved site CLD04_21050 IPR011032 GroES-like superfamily CLD04_21050 IPR014184 Formaldehyde dehydrogenase, glutathione-independent CLD04_21050 IPR036291 NAD(P)-binding domain superfamily CLD04_21050 IPR013154 Alcohol dehydrogenase, N-terminal CLD04_21060 IPR020258 Uncharacterised protein family YbeF CLD04_21065 IPR015943 WD40/YVTN repeat-like-containing domain superfamily CLD04_21065 IPR011047 Quinoprotein alcohol dehydrogenase-like superfamily CLD04_21070 IPR038765 Papain-like cysteine peptidase superfamily CLD04_21075 IPR000182 GNAT domain CLD04_21075 IPR016181 Acyl-CoA N-acyltransferase CLD04_21080 IPR019734 Tetratricopeptide repeat CLD04_21080 IPR011990 Tetratricopeptide-like helical domain superfamily CLD04_21080 IPR013026 Tetratricopeptide repeat-containing domain CLD04_21080 IPR040702 Response regulator aspartate phosphatase, N-terminal CLD04_21085 IPR030968 Phr family, secreted RapG/RapK phosphatase inhibitor CLD04_21090 IPR014033 Arginase CLD04_21090 IPR006035 Ureohydrolase CLD04_21090 IPR020855 Ureohydrolase, manganese-binding site CLD04_21090 IPR023696 Ureohydrolase domain superfamily CLD04_21095 IPR004840 Amino acid permease, conserved site CLD04_21095 IPR004841 Amino acid permease/ SLC12A domain CLD04_21100 IPR010164 Ornithine aminotransferase CLD04_21100 IPR034757 Ornithine aminotransferase, bacterial type CLD04_21100 IPR015421 Pyridoxal phosphate-dependent transferase, major domain CLD04_21100 IPR015424 Pyridoxal phosphate-dependent transferase CLD04_21100 IPR015422 Pyridoxal phosphate-dependent transferase domain 1 CLD04_21100 IPR005814 Aminotransferase class-III CLD04_21105 IPR025662 Sigma-54 interaction domain, ATP-binding site 1 CLD04_21105 IPR003593 AAA+ ATPase domain CLD04_21105 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_21105 IPR009057 Homeobox-like domain superfamily CLD04_21105 IPR002197 DNA binding HTH domain, Fis-type CLD04_21105 IPR025943 Sigma-54 interaction domain, ATP-binding site 2 CLD04_21105 IPR002078 RNA polymerase sigma factor 54 interaction domain CLD04_21105 IPR000014 PAS domain CLD04_21105 IPR035965 PAS domain superfamily CLD04_21105 IPR025944 Sigma-54 interaction domain, conserved site CLD04_21110 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_21110 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_21110 IPR005467 Histidine kinase domain CLD04_21110 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLD04_21110 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLD04_21110 IPR031967 PhoR, single Cache-like domain CLD04_21110 IPR000014 PAS domain CLD04_21110 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLD04_21110 IPR035965 PAS domain superfamily CLD04_21110 IPR013767 PAS fold CLD04_21115 IPR001867 OmpR/PhoB-type DNA-binding domain CLD04_21115 IPR001789 Signal transduction response regulator, receiver domain CLD04_21115 IPR016032 Signal transduction response regulator, C-terminal effector CLD04_21115 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_21115 IPR039420 Transcriptional regulatory protein WalR-like CLD04_21115 IPR011006 CheY-like superfamily CLD04_21130 IPR001940 Peptidase S1C CLD04_21130 IPR001478 PDZ domain CLD04_21130 IPR036034 PDZ superfamily CLD04_21130 IPR009003 Peptidase S1, PA clan CLD04_21135 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLD04_21135 IPR001279 Metallo-beta-lactamase CLD04_21140 IPR042274 Regulatory protein YycH/YycI , domain 2 CLD04_21140 IPR018604 Regulatory protein YycH-like CLD04_21145 IPR009996 Regulatory protein YycH CLD04_21145 IPR042274 Regulatory protein YycH/YycI , domain 2 CLD04_21150 IPR003594 Histidine kinase/HSP90-like ATPase CLD04_21150 IPR035965 PAS domain superfamily CLD04_21150 IPR036097 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain superfamily CLD04_21150 IPR000014 PAS domain CLD04_21150 IPR003661 Signal transduction histidine kinase, dimerisation/phosphoacceptor domain CLD04_21150 IPR003660 HAMP domain CLD04_21150 IPR005467 Histidine kinase domain CLD04_21150 IPR001610 PAC motif CLD04_21150 IPR036890 Histidine kinase/HSP90-like ATPase superfamily CLD04_21150 IPR004358 Signal transduction histidine kinase-related protein, C-terminal CLD04_21150 IPR000700 PAS-associated, C-terminal CLD04_21155 IPR011006 CheY-like superfamily CLD04_21155 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_21155 IPR039420 Transcriptional regulatory protein WalR-like CLD04_21155 IPR016032 Signal transduction response regulator, C-terminal effector CLD04_21155 IPR001789 Signal transduction response regulator, receiver domain CLD04_21155 IPR001867 OmpR/PhoB-type DNA-binding domain CLD04_21180 IPR033128 Adenylosuccinate synthase, active site CLD04_21180 IPR018220 Adenylosuccinate synthase, GTP-binding site CLD04_21180 IPR042109 Adenylosuccinate synthetase, domain 1 CLD04_21180 IPR042110 Adenylosuccinate synthetase, domain 2 CLD04_21180 IPR042111 Adenylosuccinate synthetase, domain 3 CLD04_21180 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_21180 IPR001114 Adenylosuccinate synthetase CLD04_21185 IPR037523 Vicinal oxygen chelate (VOC) domain CLD04_21185 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CLD04_21185 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CLD04_21190 IPR016136 DNA helicase DnaB, N-terminal/DNA primase DnaG, C-terminal CLD04_21190 IPR036185 DNA helicase, DnaB-like, N-terminal domain superfamily CLD04_21190 IPR007694 DNA helicase, DnaB-like, C-terminal CLD04_21190 IPR007693 DNA helicase, DnaB-like, N-terminal CLD04_21190 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_21190 IPR007692 DNA helicase, DnaB type CLD04_21190 IPR003593 AAA+ ATPase domain CLD04_21195 IPR018691 Protein of unknown function DUF2188 CLD04_21205 IPR025550 YycC-like protein CLD04_21210 IPR036259 MFS transporter superfamily CLD04_21210 IPR004747 Cyanate transport system protein CLD04_21210 IPR011701 Major facilitator superfamily CLD04_21210 IPR020846 Major facilitator superfamily domain CLD04_21215 IPR038731 Glycosyltransferase RgtA/B/C/D-like CLD04_21220 IPR000244 Ribosomal protein L9 CLD04_21220 IPR036935 Ribosomal protein L9, N-terminal domain superfamily CLD04_21220 IPR009027 Ribosomal protein L9/RNase H1, N-terminal CLD04_21220 IPR020594 Ribosomal protein L9, bacteria/chloroplast CLD04_21220 IPR020069 Ribosomal protein L9, C-terminal CLD04_21220 IPR036791 Ribosomal protein L9, C-terminal domain superfamily CLD04_21220 IPR020070 Ribosomal protein L9, N-terminal CLD04_21225 IPR001667 DDH domain CLD04_21225 IPR038763 DHH phosphoesterase superfamily CLD04_21225 IPR003156 DHHA1 domain CLD04_21225 IPR000160 GGDEF domain CLD04_21225 IPR014528 Cyclic-di-AMP phosphodiesterase GdpP/PdeA CLD04_21230 IPR018710 Protein of unknown function DUF2232 CLD04_21240 IPR012851 Spore coat protein CotF-like CLD04_21240 IPR016493 Spore coat protein CotF CLD04_21245 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_21245 IPR036390 Winged helix DNA-binding domain superfamily CLD04_21245 IPR002577 Helix-turn-helix, HxlR type CLD04_21250 IPR038222 DHHA2 domain superfamily CLD04_21250 IPR004097 DHHA2 domain CLD04_21250 IPR038763 DHH phosphoesterase superfamily CLD04_21250 IPR001667 DDH domain CLD04_21250 IPR022934 Manganese-dependent inorganic pyrophosphatase, probable CLD04_21265 IPR011701 Major facilitator superfamily CLD04_21265 IPR020846 Major facilitator superfamily domain CLD04_21265 IPR036259 MFS transporter superfamily CLD04_21285 IPR032710 NTF2-like domain superfamily CLD04_21285 IPR037401 SnoaL-like domain CLD04_21290 IPR001646 Pentapeptide repeat CLD04_21295 IPR011701 Major facilitator superfamily CLD04_21295 IPR020846 Major facilitator superfamily domain CLD04_21295 IPR036259 MFS transporter superfamily CLD04_21300 IPR036390 Winged helix DNA-binding domain superfamily CLD04_21300 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_21300 IPR000847 Transcription regulator HTH, LysR CLD04_21300 IPR005119 LysR, substrate-binding CLD04_21305 IPR000182 GNAT domain CLD04_21305 IPR039143 Glucosamine 6-phosphate N-acetyltransferase CLD04_21305 IPR016181 Acyl-CoA N-acyltransferase CLD04_21315 IPR036866 Ribonuclease Z/Hydroxyacylglutathione hydrolase-like CLD04_21315 IPR001279 Metallo-beta-lactamase CLD04_21320 IPR036390 Winged helix DNA-binding domain superfamily CLD04_21320 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_21320 IPR023187 Transcriptional regulator MarR-type, conserved site CLD04_21320 IPR000835 MarR-type HTH domain CLD04_21325 IPR000182 GNAT domain CLD04_21325 IPR016181 Acyl-CoA N-acyltransferase CLD04_21325 IPR039143 Glucosamine 6-phosphate N-acetyltransferase CLD04_21330 IPR038750 Uncharacterized protein YczE/YyaS-like CLD04_21335 IPR016181 Acyl-CoA N-acyltransferase CLD04_21335 IPR000182 GNAT domain CLD04_21335 IPR008125 Streptothricin acetyltransferase CLD04_21340 IPR038056 YjbR-like superfamily CLD04_21340 IPR007351 Uncharacterised protein YjbR CLD04_21345 IPR024072 Dihydrofolate reductase-like domain superfamily CLD04_21345 IPR002734 Bacterial bifunctional deaminase-reductase, C-terminal CLD04_21355 IPR014064 Arsenate reductase ArsC CLD04_21355 IPR023485 Phosphotyrosine protein phosphatase I CLD04_21355 IPR036196 Phosphotyrosine protein phosphatase I superfamily CLD04_21360 IPR038770 Sodium/solute symporter superfamily CLD04_21360 IPR004706 Arsenical-resistance protein Acr3 CLD04_21360 IPR002657 Bile acid:sodium symporter/arsenical resistance protein Acr3 CLD04_21365 IPR037523 Vicinal oxygen chelate (VOC) domain CLD04_21365 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CLD04_21365 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CLD04_21370 IPR036388 Winged helix-like DNA-binding domain superfamily CLD04_21370 IPR011991 ArsR-like helix-turn-helix domain CLD04_21370 IPR018334 ArsR-type transcription regulator, HTH motif CLD04_21370 IPR001845 HTH ArsR-type DNA-binding domain CLD04_21370 IPR036390 Winged helix DNA-binding domain superfamily CLD04_21390 IPR004879 Domain of unknown function DUF255 CLD04_21390 IPR012341 Six-hairpin glycosidase-like superfamily CLD04_21390 IPR024705 Spermatogenesis-associated protein 20 CLD04_21390 IPR036249 Thioredoxin-like superfamily CLD04_21390 IPR008928 Six-hairpin glycosidase superfamily CLD04_21395 IPR003675 CAAX prenyl protease 2 CLD04_21400 IPR005828 Major facilitator, sugar transporter-like CLD04_21400 IPR036259 MFS transporter superfamily CLD04_21400 IPR020846 Major facilitator superfamily domain CLD04_21405 IPR001451 Hexapeptide repeat CLD04_21405 IPR018357 Hexapeptide transferase, conserved site CLD04_21405 IPR024688 Maltose/galactoside acetyltransferase CLD04_21405 IPR011004 Trimeric LpxA-like superfamily CLD04_21410 IPR004360 Glyoxalase/fosfomycin resistance/dioxygenase domain CLD04_21410 IPR037523 Vicinal oxygen chelate (VOC) domain CLD04_21410 IPR029068 Glyoxalase/Bleomycin resistance protein/Dihydroxybiphenyl dioxygenase CLD04_21415 IPR001761 Periplasmic binding protein/LacI sugar binding domain CLD04_21415 IPR010982 Lambda repressor-like, DNA-binding domain superfamily CLD04_21415 IPR000843 LacI-type HTH domain CLD04_21415 IPR028082 Periplasmic binding protein-like I CLD04_21420 IPR004808 AP endonuclease 1 CLD04_21420 IPR020847 AP endonuclease 1, binding site CLD04_21420 IPR020848 AP endonuclease 1, conserved site CLD04_21420 IPR036691 Endonuclease/exonuclease/phosphatase superfamily CLD04_21420 IPR005135 Endonuclease/exonuclease/phosphatase CLD04_21425 IPR036870 Ribosomal protein S18 superfamily CLD04_21425 IPR001648 Ribosomal protein S18 CLD04_21425 IPR018275 Ribosomal protein S18, conserved site CLD04_21430 IPR012340 Nucleic acid-binding, OB-fold CLD04_21430 IPR000424 Primosome PriB/single-strand DNA-binding CLD04_21430 IPR011344 Single-stranded DNA-binding protein CLD04_21435 IPR035980 Ribosomal protein S6 superfamily CLD04_21435 IPR020815 Ribosomal protein S6, conserved site CLD04_21435 IPR020814 Ribosomal protein S6, plastid/chloroplast CLD04_21435 IPR014717 Translation elongation factor EF1B/ribosomal protein S6 CLD04_21435 IPR000529 Ribosomal protein S6 CLD04_21440 IPR012676 TGS-like CLD04_21440 IPR004095 TGS CLD04_21440 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_21440 IPR013029 YchF, C-terminal domain CLD04_21440 IPR041706 YchF, N-terminal CLD04_21440 IPR023192 TGS-like domain superfamily CLD04_21440 IPR006073 GTP binding domain CLD04_21440 IPR031167 OBG-type guanine nucleotide-binding (G) domain CLD04_21440 IPR012675 Beta-grasp domain superfamily CLD04_21440 IPR004396 Ribosome-binding ATPase YchF/Obg-like ATPase 1 CLD04_21445 IPR006657 Molybdopterin dinucleotide-binding domain CLD04_21445 IPR009010 Aspartate decarboxylase-like domain superfamily CLD04_21445 IPR006963 Molybdopterin oxidoreductase, 4Fe-4S domain CLD04_21445 IPR006656 Molybdopterin oxidoreductase CLD04_21450 IPR009296 Protein of unknown function DUF951 CLD04_21455 IPR038728 Uncharacterized membrane protein YkvI CLD04_21460 IPR009665 Protein of unknown function DUF1256 CLD04_21460 IPR023430 Peptidase HybD-like domain superfamily CLD04_21465 IPR041468 ParB/Spo0J, HTH domain CLD04_21465 IPR036086 ParB/Sulfiredoxin superfamily CLD04_21465 IPR004437 ParB/RepB/Spo0J partition protein CLD04_21465 IPR003115 ParB/Sulfiredoxin CLD04_21470 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_21470 IPR025669 AAA domain CLD04_21475 IPR009589 Sublancin immunity protein SunI CLD04_21480 IPR003115 ParB/Sulfiredoxin CLD04_21480 IPR023705 Nucleoid occlusion protein CLD04_21480 IPR041468 ParB/Spo0J, HTH domain CLD04_21480 IPR004437 ParB/RepB/Spo0J partition protein CLD04_21480 IPR036086 ParB/Sulfiredoxin superfamily CLD04_21485 IPR003682 rRNA small subunit methyltransferase G CLD04_21485 IPR029063 S-adenosyl-L-methionine-dependent methyltransferase CLD04_21490 IPR004416 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG CLD04_21490 IPR036188 FAD/NAD(P)-binding domain superfamily CLD04_21490 IPR002218 tRNA uridine 5-carboxymethylaminomethyl modification enzyme MnmG-related CLD04_21490 IPR020595 MnmG-related, conserved site CLD04_21490 IPR026904 GidA associated domain 3 CLD04_21495 IPR027368 tRNA modification GTPase MnmE domain 2 CLD04_21495 IPR027417 P-loop containing nucleoside triphosphate hydrolase CLD04_21495 IPR031168 TrmE-type guanine nucleotide-binding domain CLD04_21495 IPR018948 GTP-binding protein TrmE, N-terminal CLD04_21495 IPR006073 GTP binding domain CLD04_21495 IPR004520 tRNA modification GTPase MnmE CLD04_21495 IPR025867 MnmE, helical domain CLD04_21495 IPR005225 Small GTP-binding protein domain CLD04_21495 IPR027266 GTP-binding protein TrmE/Glycine cleavage system T protein, domain 1 CLD04_21500 IPR001374 R3H domain CLD04_21500 IPR015946 K homology domain-like, alpha/beta CLD04_21500 IPR004087 K Homology domain CLD04_21500 IPR038008 Jag, KH domain CLD04_21500 IPR034079 Jag, R3H domain CLD04_21500 IPR032782 Jag, N-terminal CLD04_21500 IPR039247 Jag protein CLD04_21500 IPR038247 Jag, N-terminal domain superfamily CLD04_21500 IPR036867 R3H domain superfamily CLD04_21505 IPR001708 Membrane insertase YidC/ALB3/OXA1/COX18 CLD04_21505 IPR023060 Membrane insertase YidC/YidC1/YidC2, Firmicutes CLD04_21505 IPR028055 Membrane insertase YidC/Oxa1, C-terminal CLD04_21510 IPR014721 Ribosomal protein S5 domain 2-type fold, subgroup CLD04_21510 IPR020568 Ribosomal protein S5 domain 2-type fold CLD04_21510 IPR000100 Ribonuclease P CLD04_21510 IPR020539 Ribonuclease P, conserved site CLD04_21515 IPR020939 Ribosomal protein L34, conserved site CLD04_21515 IPR000271 Ribosomal protein L34