locus-tag class description CLD04_00005 PF11638 DnaA N-terminal domain CLD04_00005 PF08299 Bacterial dnaA protein helix-turn-helix CLD04_00005 PF00308 Bacterial dnaA protein CLD04_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain CLD04_00010 PF02767 DNA polymerase III beta subunit, central domain CLD04_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain CLD04_00020 PF02463 RecF/RecN/SMC N terminal domain CLD04_00025 PF04025 Domain of unknown function (DUF370) CLD04_00030 PF01751 Toprim domain CLD04_00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLD04_00030 PF00204 DNA gyrase B CLD04_00030 PF00986 DNA gyrase B subunit, carboxyl terminus CLD04_00035 PF03989 DNA gyrase C-terminal domain, beta-propeller CLD04_00035 PF00521 DNA gyrase/topoisomerase IV, subunit A CLD04_00065 PF14175 YaaC-like Protein CLD04_00070 PF00478 IMP dehydrogenase / GMP reductase domain CLD04_00070 PF00571 CBS domain CLD04_00075 PF00768 D-alanyl-D-alanine carboxypeptidase CLD04_00075 PF07943 Penicillin-binding protein 5, C-terminal domain CLD04_00080 PF01680 SOR/SNZ family CLD04_00085 PF01174 SNO glutamine amidotransferase family CLD04_00095 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLD04_00095 PF02403 Seryl-tRNA synthetase N-terminal domain CLD04_00105 PF01712 Deoxynucleoside kinase CLD04_00110 PF01712 Deoxynucleoside kinase CLD04_00115 PF01476 LysM domain CLD04_00115 PF00704 Glycosyl hydrolases family 18 CLD04_00120 PF00857 Isochorismatase family CLD04_00125 PF14437 MafB19-like deaminase CLD04_00135 PF12169 DNA polymerase III subunits gamma and tau domain III CLD04_00140 PF02575 YbaB/EbfC DNA-binding family CLD04_00145 PF13662 Toprim domain CLD04_00145 PF02132 RecR protein CLD04_00150 PF10704 Protein of unknown function (DUF2508) CLD04_00155 PF07441 SigmaK-factor processing regulatory protein BofA CLD04_00185 PF10764 Inhibitor of sigma-G Gin CLD04_00190 PF10112 5-bromo-4-chloroindolyl phosphate hydrolysis protein CLD04_00195 PF05816 Toxic anion resistance protein (TelA) CLD04_00200 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CLD04_00200 PF01276 Orn/Lys/Arg decarboxylase, major domain CLD04_00205 PF02223 Thymidylate kinase CLD04_00210 PF06153 Cyclic-di-AMP receptor CLD04_00215 PF03885 Protein of unknown function (DUF327) CLD04_00220 PF09115 DNA polymerase III, delta subunit, C terminal CLD04_00225 PF04468 PSP1 C-terminal conserved region CLD04_00230 PF06156 Initiation control protein YabA CLD04_00235 PF05175 Methyltransferase small domain CLD04_00240 PF01541 GIY-YIG catalytic domain CLD04_00245 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLD04_00250 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CLD04_00250 PF18277 AbrB C-terminal domain CLD04_00255 PF01588 Putative tRNA binding domain CLD04_00255 PF08264 Anticodon-binding domain of tRNA CLD04_00255 PF09334 tRNA synthetases class I (M) CLD04_00260 PF01026 TatD related DNase CLD04_00265 PF06725 3D domain CLD04_00265 PF03990 G5-linked-Ubiquitin-like domain CLD04_00265 PF07501 G5 domain CLD04_00270 PF13662 Toprim domain CLD04_00270 PF13331 Domain of unknown function (DUF4093) CLD04_00275 PF00398 Ribosomal RNA adenine dimethylase CLD04_00280 PF05582 YabG peptidase U57 CLD04_00285 PF06257 Biofilm formation stimulator VEG CLD04_00290 PF00269 Small, acid-soluble spore proteins, alpha/beta type CLD04_00295 PF00288 GHMP kinases N terminal domain CLD04_00295 PF08544 GHMP kinases C terminal CLD04_00300 PF09182 Bacterial purine repressor, N-terminal CLD04_00300 PF00156 Phosphoribosyl transferase domain CLD04_00305 PF01042 Endoribonuclease L-PSP CLD04_00310 PF04026 SpoVG CLD04_00315 PF00483 Nucleotidyl transferase CLD04_00315 PF00132 Bacterial transferase hexapeptide (six repeats) CLD04_00320 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CLD04_00320 PF14572 Phosphoribosyl synthetase-associated domain CLD04_00325 PF14693 Ribosomal protein TL5, C-terminal domain CLD04_00325 PF01386 Ribosomal L25p family CLD04_00330 PF01195 Peptidyl-tRNA hydrolase CLD04_00335 PF10955 Protein of unknown function (DUF2757) CLD04_00340 PF00270 DEAD/DEAH box helicase CLD04_00340 PF17757 UvrB interaction domain CLD04_00340 PF03461 TRCF domain CLD04_00340 PF00271 Helicase conserved C-terminal domain CLD04_00340 PF02559 CarD-like/TRCF domain CLD04_00345 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CLD04_00345 PF15714 Stage V sporulation protein T C-terminal, transcription factor CLD04_00350 PF01943 Polysaccharide biosynthesis protein CLD04_00350 PF14667 Polysaccharide biosynthesis C-terminal domain CLD04_00355 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLD04_00355 PF03819 MazG nucleotide pyrophosphohydrolase domain CLD04_00360 PF01479 S4 domain CLD04_00365 PF07873 YabP family CLD04_00370 PF09578 Spore cortex protein YabQ (Spore_YabQ) CLD04_00375 PF04977 Septum formation initiator CLD04_00380 PF00575 S1 RNA binding domain CLD04_00395 PF07228 Stage II sporulation protein E (SpoIIE) CLD04_00400 PF00092 von Willebrand factor type A domain CLD04_00405 PF00069 Protein kinase domain CLD04_00410 PF01171 PP-loop family CLD04_00410 PF09179 TilS substrate binding domain CLD04_00410 PF11734 TilS substrate C-terminal domain CLD04_00420 PF01434 Peptidase family M41 CLD04_00420 PF06480 FtsH Extracellular CLD04_00420 PF17862 AAA+ lid domain CLD04_00420 PF00004 ATPase family associated with various cellular activities (AAA) CLD04_00425 PF03309 Type III pantothenate kinase CLD04_00430 PF01430 Hsp33 protein CLD04_00435 PF13145 PPIC-type PPIASE domain CLD04_00440 PF00291 Pyridoxal-phosphate dependent enzyme CLD04_00445 PF04715 Anthranilate synthase component I, N terminal region CLD04_00445 PF00425 chorismate binding enzyme CLD04_00450 PF00117 Glutamine amidotransferase class-I CLD04_00455 PF01063 Amino-transferase class IV CLD04_00460 PF00809 Pterin binding enzyme CLD04_00465 PF02152 Dihydroneopterin aldolase CLD04_00470 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CLD04_00475 PF01381 Helix-turn-helix CLD04_00480 PF01207 Dihydrouridine synthase (Dus) CLD04_00485 PF00152 tRNA synthetases class II (D, K and N) CLD04_00485 PF01336 OB-fold nucleic acid binding domain CLD04_00565 PF17727 CtsR C-terminal dimerization domain CLD04_00565 PF05848 CtsR N-terminal HTH domain CLD04_00570 PF02151 UvrB/uvrC motif CLD04_00575 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain CLD04_00580 PF07724 AAA domain (Cdc48 subfamily) CLD04_00580 PF00004 ATPase family associated with various cellular activities (AAA) CLD04_00580 PF02861 Clp amino terminal domain, pathogenicity island component CLD04_00580 PF10431 C-terminal, D2-small domain, of ClpB protein CLD04_00580 PF17871 AAA lid domain CLD04_00585 PF18073 Rubredoxin metal binding domain CLD04_00590 PF02457 DisA bacterial checkpoint controller nucleotide-binding CLD04_00590 PF10635 DisA bacterial checkpoint controller linker region CLD04_00600 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CLD04_00605 PF02542 YgbB family CLD04_00610 PF00749 tRNA synthetases class I (E and Q), catalytic domain CLD04_00620 PF00132 Bacterial transferase hexapeptide (six repeats) CLD04_00620 PF06426 Serine acetyltransferase, N-terminal CLD04_00625 PF09190 DALR domain CLD04_00625 PF01406 tRNA synthetases class I (C) catalytic domain CLD04_00630 PF00636 Ribonuclease III domain CLD04_00635 PF00588 SpoU rRNA Methylase family CLD04_00635 PF08032 RNA 2'-O ribose methyltransferase substrate binding CLD04_00640 PF05991 YacP-like NYN domain CLD04_00645 PF08281 Sigma-70, region 4 CLD04_00645 PF04542 Sigma-70 region 2 CLD04_00650 PF00471 Ribosomal protein L33 CLD04_00655 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CLD04_00660 PF00467 KOW motif CLD04_00660 PF02357 Transcription termination factor nusG CLD04_00665 PF00298 Ribosomal protein L11, RNA binding domain CLD04_00665 PF03946 Ribosomal protein L11, N-terminal domain CLD04_00670 PF00687 Ribosomal protein L1p/L10e family CLD04_00675 PF00466 Ribosomal protein L10 CLD04_00680 PF16320 Ribosomal protein L7/L12 dimerisation domain CLD04_00680 PF00542 Ribosomal protein L7/L12 C-terminal domain CLD04_00685 PF05175 Methyltransferase small domain CLD04_00690 PF00562 RNA polymerase Rpb2, domain 6 CLD04_00690 PF04560 RNA polymerase Rpb2, domain 7 CLD04_00690 PF10385 RNA polymerase beta subunit external 1 domain CLD04_00690 PF04565 RNA polymerase Rpb2, domain 3 CLD04_00690 PF04561 RNA polymerase Rpb2, domain 2 CLD04_00690 PF04563 RNA polymerase beta subunit CLD04_00695 PF04997 RNA polymerase Rpb1, domain 1 CLD04_00695 PF04998 RNA polymerase Rpb1, domain 5 CLD04_00695 PF04983 RNA polymerase Rpb1, domain 3 CLD04_00695 PF05000 RNA polymerase Rpb1, domain 4 CLD04_00695 PF00623 RNA polymerase Rpb1, domain 2 CLD04_00700 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family CLD04_00705 PF00164 Ribosomal protein S12/S23 CLD04_00710 PF00177 Ribosomal protein S7p/S5e CLD04_00715 PF00009 Elongation factor Tu GTP binding domain CLD04_00715 PF03764 Elongation factor G, domain IV CLD04_00715 PF00679 Elongation factor G C-terminus CLD04_00715 PF03144 Elongation factor Tu domain 2 CLD04_00715 PF14492 Elongation Factor G, domain II CLD04_00720 PF03143 Elongation factor Tu C-terminal domain CLD04_00720 PF03144 Elongation factor Tu domain 2 CLD04_00720 PF00009 Elongation factor Tu GTP binding domain CLD04_00725 PF12146 Serine aminopeptidase, S33 CLD04_00730 PF00338 Ribosomal protein S10p/S20e CLD04_00735 PF00297 Ribosomal protein L3 CLD04_00740 PF00573 Ribosomal protein L4/L1 family CLD04_00745 PF00276 Ribosomal protein L23 CLD04_00750 PF03947 Ribosomal Proteins L2, C-terminal domain CLD04_00750 PF00181 Ribosomal Proteins L2, RNA binding domain CLD04_00755 PF00203 Ribosomal protein S19 CLD04_00760 PF00237 Ribosomal protein L22p/L17e CLD04_00765 PF07650 KH domain CLD04_00765 PF00189 Ribosomal protein S3, C-terminal domain CLD04_00770 PF00252 Ribosomal protein L16p/L10e CLD04_00775 PF00831 Ribosomal L29 protein CLD04_00780 PF00366 Ribosomal protein S17 CLD04_00785 PF00238 Ribosomal protein L14p/L23e CLD04_00790 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CLD04_00790 PF00467 KOW motif CLD04_00795 PF00281 Ribosomal protein L5 CLD04_00795 PF00673 ribosomal L5P family C-terminus CLD04_00800 PF00253 Ribosomal protein S14p/S29e CLD04_00805 PF00410 Ribosomal protein S8 CLD04_00810 PF00347 Ribosomal protein L6 CLD04_00815 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CLD04_00820 PF00333 Ribosomal protein S5, N-terminal domain CLD04_00820 PF03719 Ribosomal protein S5, C-terminal domain CLD04_00825 PF00327 Ribosomal protein L30p/L7e CLD04_00830 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CLD04_00835 PF00344 SecY translocase CLD04_00840 PF05191 Adenylate kinase, active site lid CLD04_00845 PF00557 Metallopeptidase family M24 CLD04_00855 PF01176 Translation initiation factor 1A / IF-1 CLD04_00860 PF00444 Ribosomal protein L36 CLD04_00865 PF00416 Ribosomal protein S13/S18 CLD04_00870 PF00411 Ribosomal protein S11 CLD04_00875 PF01000 RNA polymerase Rpb3/RpoA insert domain CLD04_00875 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CLD04_00875 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CLD04_00880 PF01196 Ribosomal protein L17 CLD04_00885 PF00005 ABC transporter CLD04_00890 PF00005 ABC transporter CLD04_00895 PF02361 Cobalt transport protein CLD04_00900 PF01416 tRNA pseudouridine synthase CLD04_00905 PF00572 Ribosomal protein L13 CLD04_00910 PF00380 Ribosomal protein S9/S16 CLD04_00920 PF08241 Methyltransferase domain CLD04_00925 PF10730 Protein of unknown function (DUF2521) CLD04_00930 PF01520 N-acetylmuramoyl-L-alanine amidase CLD04_00935 PF10609 NUBPL iron-transfer P-loop NTPase CLD04_00940 PF17898 Spore germination GerD central core domain CLD04_00945 PF14089 KinB-signalling pathway activation in sporulation CLD04_00950 PF01522 Polysaccharide deacetylase CLD04_00985 PF06114 IrrE N-terminal-like domain CLD04_00995 PF01381 Helix-turn-helix CLD04_01055 PF00772 DnaB-like helicase N terminal domain CLD04_01055 PF03796 DnaB-like helicase C terminal domain CLD04_01065 PF05866 Endodeoxyribonuclease RusA CLD04_01130 PF00145 C-5 cytosine-specific DNA methylase CLD04_01150 PF04466 Phage terminase large subunit CLD04_01150 PF17288 Terminase RNAseH like domain CLD04_01155 PF04860 Phage portal protein CLD04_01160 PF04233 Phage Mu protein F like protein CLD04_01170 PF14550 Putative phage serine protease XkdF CLD04_01175 PF05065 Phage capsid family CLD04_01180 PF14553 YqbF, hypothetical protein domain CLD04_01185 PF11436 Protein of unknown function (DUF3199) CLD04_01190 PF12206 Domain of unknown function (DUF3599) CLD04_01195 PF04883 Bacteriophage HK97-gp10, putative tail-component CLD04_01210 PF17482 Phage tail sheath C-terminal domain CLD04_01210 PF17481 Phage tail sheath protein beta-sandwich domain CLD04_01210 PF04984 Phage tail sheath protein subtilisin-like domain CLD04_01215 PF09393 Phage tail tube protein CLD04_01220 PF08890 Phage XkdN-like tail assembly chaperone protein, TAC CLD04_01230 PF01464 Transglycosylase SLT domain CLD04_01235 PF01476 LysM domain CLD04_01245 PF10844 Protein of unknown function (DUF2577) CLD04_01250 PF10934 Protein of unknown function (DUF2634) CLD04_01255 PF04865 Baseplate J-like protein CLD04_01260 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) CLD04_01275 PF09636 XkdW protein CLD04_01280 PF09693 Phage uncharacterised protein (Phage_XkdX) CLD04_01290 PF10779 Haemolysin XhlA CLD04_01295 PF04688 SPP1 phage holin CLD04_01300 PF01471 Putative peptidoglycan binding domain CLD04_01300 PF01476 LysM domain CLD04_01300 PF01510 N-acetylmuramoyl-L-alanine amidase CLD04_01310 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH CLD04_01310 PF04740 LXG domain of WXG superfamily CLD04_01320 PF18801 response regulator aspartate phosphatase H, N terminal CLD04_01320 PF13176 Tetratricopeptide repeat CLD04_01325 PF08863 YolD-like protein CLD04_01335 PF00717 Peptidase S24-like CLD04_01335 PF01726 LexA DNA binding domain CLD04_01395 PF01740 STAS domain CLD04_01395 PF00916 Sulfate permease family CLD04_01400 PF01758 Sodium Bile acid symporter family CLD04_01405 PF00756 Putative esterase CLD04_01410 PF01032 FecCD transport family CLD04_01415 PF01032 FecCD transport family CLD04_01420 PF01497 Periplasmic binding protein CLD04_01425 PF12833 Helix-turn-helix domain CLD04_01425 PF01497 Periplasmic binding protein CLD04_01430 PF07075 Protein of unknown function (DUF1343) CLD04_01435 PF01915 Glycosyl hydrolase family 3 C-terminal domain CLD04_01435 PF00933 Glycosyl hydrolase family 3 N terminal domain CLD04_01440 PF00144 Beta-lactamase CLD04_01445 PF02378 Phosphotransferase system, EIIC CLD04_01445 PF00367 phosphotransferase system, EIIB CLD04_01450 PF01418 Helix-turn-helix domain, rpiR family CLD04_01450 PF01380 SIS domain CLD04_01455 PF01380 SIS domain CLD04_01465 PF04463 Protein of unknown function (DUF523) CLD04_01495 PF08281 Sigma-70, region 4 CLD04_01495 PF04542 Sigma-70 region 2 CLD04_01500 PF13490 Putative zinc-finger CLD04_01505 PF02457 DisA bacterial checkpoint controller nucleotide-binding CLD04_01510 PF07949 YbbR-like protein CLD04_01515 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CLD04_01515 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CLD04_01515 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CLD04_01515 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CLD04_01525 PF01380 SIS domain CLD04_01535 PF00730 HhH-GPD superfamily base excision DNA repair protein CLD04_01535 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain CLD04_01545 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CLD04_01545 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CLD04_01550 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CLD04_01550 PF00361 Proton-conducting membrane transporter CLD04_01555 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) CLD04_01570 PF10057 Uncharacterized conserved protein (DUF2294) CLD04_01590 PF00069 Protein kinase domain CLD04_01600 PF16226 Domain of unknown function (DUF4885) CLD04_01605 PF00324 Amino acid permease CLD04_01610 PF17334 Minor curli fiber component A CLD04_01615 PF17340 Family of unknown function (DUF5370) CLD04_01620 PF00905 Penicillin binding protein transpeptidase domain CLD04_01625 PF00067 Cytochrome P450 CLD04_01635 PF13520 Amino acid permease CLD04_01640 PF03009 Glycerophosphoryl diester phosphodiesterase family CLD04_01645 PF07690 Major Facilitator Superfamily CLD04_01655 PF10852 Protein of unknown function (DUF2651) CLD04_01660 PF01047 MarR family CLD04_01660 PF00583 Acetyltransferase (GNAT) family CLD04_01665 PF07690 Major Facilitator Superfamily CLD04_01675 PF08924 Domain of unknown function (DUF1906) CLD04_01675 PF01471 Putative peptidoglycan binding domain CLD04_01680 PF00892 EamA-like transporter family CLD04_01685 PF12833 Helix-turn-helix domain CLD04_01685 PF02311 AraC-like ligand binding domain CLD04_01690 PF02222 ATP-grasp domain CLD04_01695 PF00089 Trypsin CLD04_01700 PF10794 Protein of unknown function (DUF2606) CLD04_01705 PF12697 Alpha/beta hydrolase family CLD04_01710 PF01066 CDP-alcohol phosphatidyltransferase CLD04_01715 PF09335 SNARE associated Golgi protein CLD04_01720 PF02666 Phosphatidylserine decarboxylase CLD04_01730 PF05139 Erythromycin esterase CLD04_01740 PF00375 Sodium:dicarboxylate symporter family CLD04_01745 PF02378 Phosphotransferase system, EIIC CLD04_01745 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CLD04_01745 PF00367 phosphotransferase system, EIIB CLD04_01750 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CLD04_01760 PF07853 Protein of unknown function (DUF1648) CLD04_01765 PF01063 Amino-transferase class IV CLD04_01770 PF00324 Amino acid permease CLD04_01775 PF02574 Homocysteine S-methyltransferase CLD04_01785 PF01235 Sodium:alanine symporter family CLD04_01790 PF04960 Glutaminase CLD04_01795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLD04_01800 PF08664 YcbB domain CLD04_01800 PF00072 Response regulator receiver domain CLD04_01805 PF00701 Dihydrodipicolinate synthetase family CLD04_01810 PF00171 Aldehyde dehydrogenase family CLD04_01820 PF13378 Enolase C-terminal domain-like CLD04_01825 PF07729 FCD domain CLD04_01825 PF00392 Bacterial regulatory proteins, gntR family CLD04_01840 PF15777 Tryptophan RNA-binding attenuator protein inhibitory protein CLD04_01845 PF00892 EamA-like transporter family CLD04_01850 PF00072 Response regulator receiver domain CLD04_01850 PF00486 Transcriptional regulatory protein, C terminal CLD04_01855 PF00512 His Kinase A (phospho-acceptor) domain CLD04_01855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLD04_01860 PF00005 ABC transporter CLD04_01870 PF10710 Protein of unknown function (DUF2512) CLD04_01875 PF07486 Cell Wall Hydrolase CLD04_01885 PF03147 Ferredoxin-fold anticodon binding domain CLD04_01885 PF01588 Putative tRNA binding domain CLD04_01885 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CLD04_01885 PF03483 B3/4 domain CLD04_01885 PF03484 tRNA synthetase B5 domain CLD04_01895 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLD04_01910 PF02774 Semialdehyde dehydrogenase, dimerisation domain CLD04_01910 PF01118 Semialdehyde dehydrogenase, NAD binding domain CLD04_01915 PF13520 Amino acid permease CLD04_01930 PF00764 Arginosuccinate synthase CLD04_01935 PF01053 Cys/Met metabolism PLP-dependent enzyme CLD04_01940 PF01810 LysE type translocator CLD04_01945 PF00155 Aminotransferase class I and II CLD04_01945 PF00392 Bacterial regulatory proteins, gntR family CLD04_01960 PF09423 PhoD-like phosphatase CLD04_01960 PF16655 PhoD-like phosphatase, N-terminal domain CLD04_01965 PF02416 mttA/Hcf106 family CLD04_01970 PF00902 Sec-independent protein translocase protein (TatC) CLD04_01975 PF01470 Pyroglutamyl peptidase CLD04_01980 PF00266 Aminotransferase class-V CLD04_01985 PF07690 Major Facilitator Superfamily CLD04_01990 PF00440 Bacterial regulatory proteins, tetR family CLD04_01995 PF00710 Asparaginase, N-terminal CLD04_01995 PF17763 Glutaminase/Asparaginase C-terminal domain CLD04_02000 PF01674 Lipase (class 2) CLD04_02005 PF06271 RDD family CLD04_02010 PF05225 helix-turn-helix, Psq domain CLD04_02010 PF02810 SEC-C motif CLD04_02020 PF00072 Response regulator receiver domain CLD04_02020 PF04397 LytTr DNA-binding domain CLD04_02025 PF00005 ABC transporter CLD04_02030 PF12679 ABC-2 family transporter protein CLD04_02035 PF00248 Aldo/keto reductase family CLD04_02040 PF17118 Domain of unknown function (DUF5105) CLD04_02040 PF11611 Domain of unknown function (DUF4352) CLD04_02045 PF16244 Domain of unknown function (DUF4901) CLD04_02050 PF16244 Domain of unknown function (DUF4901) CLD04_02055 PF13539 D-alanyl-D-alanine carboxypeptidase CLD04_02060 PF18801 response regulator aspartate phosphatase H, N terminal CLD04_02070 PF00128 Alpha amylase, catalytic domain CLD04_02075 PF01297 Zinc-uptake complex component A periplasmic CLD04_02080 PF00005 ABC transporter CLD04_02085 PF00950 ABC 3 transport family CLD04_02090 PF00296 Luciferase-like monooxygenase CLD04_02095 PF02342 TerD domain CLD04_02100 PF02342 TerD domain CLD04_02105 PF02342 TerD domain CLD04_02110 PF03741 Integral membrane protein TerC family CLD04_02115 PF14266 Putative component of 'biosynthetic module' CLD04_02120 PF05816 Toxic anion resistance protein (TelA) CLD04_02125 PF07690 Major Facilitator Superfamily CLD04_02130 PF07690 Major Facilitator Superfamily CLD04_02140 PF00571 CBS domain CLD04_02140 PF00005 ABC transporter CLD04_02145 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_02150 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CLD04_02155 PF07687 Peptidase dimerisation domain CLD04_02155 PF01546 Peptidase family M20/M25/M40 CLD04_02160 PF03606 C4-dicarboxylate anaerobic carrier CLD04_02175 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CLD04_02175 PF00056 lactate/malate dehydrogenase, NAD binding domain CLD04_02180 PF02652 L-lactate permease CLD04_02190 PF08892 YqcI/YcgG family CLD04_02205 PF02540 NAD synthase CLD04_02215 PF01202 Shikimate kinase CLD04_02220 PF08241 Methyltransferase domain CLD04_02225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLD04_02225 PF03466 LysR substrate binding domain CLD04_02230 PF05448 Acetyl xylan esterase (AXE1) CLD04_02235 PF10127 RNA repair pathway DNA polymerase beta family CLD04_02240 PF01619 Proline dehydrogenase CLD04_02245 PF00171 Aldehyde dehydrogenase family CLD04_02250 PF00474 Sodium:solute symporter family CLD04_02255 PF17853 GGDEF-like domain CLD04_02255 PF13556 PucR C-terminal helix-turn-helix domain CLD04_02260 PF09323 Domain of unknown function (DUF1980) CLD04_02265 PF03773 Predicted permease CLD04_02270 PF00561 alpha/beta hydrolase fold CLD04_02275 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLD04_02280 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLD04_02285 PF00355 Rieske [2Fe-2S] domain CLD04_02290 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CLD04_02290 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CLD04_02290 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLD04_02290 PF18267 Rubredoxin NAD+ reductase C-terminal domain CLD04_02290 PF04324 BFD-like [2Fe-2S] binding domain CLD04_02295 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CLD04_02295 PF00384 Molybdopterin oxidoreductase CLD04_02295 PF01568 Molydopterin dinucleotide binding domain CLD04_02300 PF04324 BFD-like [2Fe-2S] binding domain CLD04_02300 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CLD04_02300 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLD04_02300 PF18267 Rubredoxin NAD+ reductase C-terminal domain CLD04_02305 PF07690 Major Facilitator Superfamily CLD04_02310 PF02649 Type I GTP cyclohydrolase folE2 CLD04_02315 PF03734 L,D-transpeptidase catalytic domain CLD04_02330 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_02335 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLD04_02340 PF06271 RDD family CLD04_02345 PF10925 Protein of unknown function (DUF2680) CLD04_02350 PF00232 Glycosyl hydrolase family 1 CLD04_02355 PF11033 Competence protein J (ComJ) CLD04_02360 PF14040 Deoxyribonuclease NucA/NucB CLD04_02365 PF17202 Single cache domain 3 CLD04_02365 PF00672 HAMP domain CLD04_02365 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLD04_02370 PF01380 SIS domain CLD04_02375 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CLD04_02380 PF01638 HxlR-like helix-turn-helix CLD04_02385 PF00501 AMP-binding enzyme CLD04_02385 PF13193 AMP-binding enzyme C-terminal domain CLD04_02385 PF00668 Condensation domain CLD04_02385 PF00550 Phosphopantetheine attachment site CLD04_02390 PF13193 AMP-binding enzyme C-terminal domain CLD04_02390 PF00668 Condensation domain CLD04_02390 PF00550 Phosphopantetheine attachment site CLD04_02390 PF00501 AMP-binding enzyme CLD04_02395 PF00668 Condensation domain CLD04_02395 PF00501 AMP-binding enzyme CLD04_02395 PF13193 AMP-binding enzyme C-terminal domain CLD04_02395 PF00550 Phosphopantetheine attachment site CLD04_02405 PF00501 AMP-binding enzyme CLD04_02405 PF13193 AMP-binding enzyme C-terminal domain CLD04_02405 PF00668 Condensation domain CLD04_02405 PF00550 Phosphopantetheine attachment site CLD04_02410 PF00550 Phosphopantetheine attachment site CLD04_02410 PF00668 Condensation domain CLD04_02410 PF13193 AMP-binding enzyme C-terminal domain CLD04_02410 PF00501 AMP-binding enzyme CLD04_02410 PF00975 Thioesterase domain CLD04_02415 PF00975 Thioesterase domain CLD04_02420 PF07690 Major Facilitator Superfamily CLD04_02425 PF14317 YcxB-like protein CLD04_02430 PF00892 EamA-like transporter family CLD04_02435 PF00392 Bacterial regulatory proteins, gntR family CLD04_02435 PF00155 Aminotransferase class I and II CLD04_02440 PF01648 4'-phosphopantetheinyl transferase superfamily CLD04_02450 PF00005 ABC transporter CLD04_02455 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_02460 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLD04_02465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLD04_02465 PF03466 LysR substrate binding domain CLD04_02470 PF02441 Flavoprotein CLD04_02475 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase CLD04_02490 PF00561 alpha/beta hydrolase fold CLD04_02495 PF00854 POT family CLD04_02500 PF12708 Pectate lyase superfamily protein CLD04_02500 PF13229 Right handed beta helix region CLD04_02510 PF03323 Bacillus/Clostridium GerA spore germination protein CLD04_02515 PF05504 Spore germination B3/ GerAC like, C-terminal CLD04_02520 PF03845 Spore germination protein CLD04_02525 PF00005 ABC transporter CLD04_02530 PF02687 FtsX-like permease family CLD04_02530 PF12704 MacB-like periplasmic core domain CLD04_02535 PF00486 Transcriptional regulatory protein, C terminal CLD04_02535 PF00072 Response regulator receiver domain CLD04_02540 PF00512 His Kinase A (phospho-acceptor) domain CLD04_02540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLD04_02540 PF00672 HAMP domain CLD04_02545 PF18801 response regulator aspartate phosphatase H, N terminal CLD04_02550 PF11131 Rap-phr extracellular signalling CLD04_02555 PF09680 Family of unknown function CLD04_02560 PF09680 Family of unknown function CLD04_02565 PF00696 Amino acid kinase family CLD04_02565 PF13840 ACT domain CLD04_02570 PF01032 FecCD transport family CLD04_02575 PF01032 FecCD transport family CLD04_02580 PF00005 ABC transporter CLD04_02585 PF01497 Periplasmic binding protein CLD04_02590 PF07690 Major Facilitator Superfamily CLD04_02595 PF00440 Bacterial regulatory proteins, tetR family CLD04_02600 PF00881 Nitroreductase family CLD04_02605 PF03992 Antibiotic biosynthesis monooxygenase CLD04_02610 PF01022 Bacterial regulatory protein, arsR family CLD04_02615 PF00392 Bacterial regulatory proteins, gntR family CLD04_02615 PF00155 Aminotransferase class I and II CLD04_02620 PF00202 Aminotransferase class-III CLD04_02625 PF00171 Aldehyde dehydrogenase family CLD04_02630 PF06800 Sugar transport protein CLD04_02640 PF07987 Domain of unkown function (DUF1775) CLD04_02645 PF13115 YtkA-like CLD04_02645 PF05425 Copper resistance protein D CLD04_02645 PF04234 CopC domain CLD04_02650 PF05573 NosL CLD04_02650 PF08220 DeoR-like helix-turn-helix domain CLD04_02660 PF02378 Phosphotransferase system, EIIC CLD04_02660 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CLD04_02665 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CLD04_02670 PF01232 Mannitol dehydrogenase Rossmann domain CLD04_02670 PF08125 Mannitol dehydrogenase C-terminal domain CLD04_02675 PF00180 Isocitrate/isopropylmalate dehydrogenase CLD04_02680 PF10502 Signal peptidase, peptidase S26 CLD04_02685 PF01738 Dienelactone hydrolase family CLD04_02690 PF07977 FabA-like domain CLD04_02705 PF03746 LamB/YcsF family CLD04_02710 PF01566 Natural resistance-associated macrophage protein CLD04_02715 PF07286 Protein of unknown function (DUF1445) CLD04_02720 PF02682 Carboxyltransferase domain, subdomain C and D CLD04_02725 PF02626 Carboxyltransferase domain, subdomain A and B CLD04_02730 PF01614 Bacterial transcriptional regulator CLD04_02730 PF09339 IclR helix-turn-helix domain CLD04_02735 PF13472 GDSL-like Lipase/Acylhydrolase family CLD04_02740 PF13129 Protein of unknown function (DUF3953) CLD04_02745 PF03992 Antibiotic biosynthesis monooxygenase CLD04_02750 PF05223 NTF2-like N-terminal transpeptidase domain CLD04_02750 PF03717 Penicillin-binding Protein dimerisation domain CLD04_02750 PF00905 Penicillin binding protein transpeptidase domain CLD04_02755 PF00248 Aldo/keto reductase family CLD04_02760 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CLD04_02760 PF00874 PRD domain CLD04_02760 PF08279 HTH domain CLD04_02760 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CLD04_02760 PF05043 Mga helix-turn-helix domain CLD04_02765 PF00501 AMP-binding enzyme CLD04_02765 PF13193 AMP-binding enzyme C-terminal domain CLD04_02770 PF13649 Methyltransferase domain CLD04_02785 PF13302 Acetyltransferase (GNAT) domain CLD04_02790 PF16242 Pyridoxamine 5'-phosphate oxidase like CLD04_02795 PF10997 Alternate to MurJ CLD04_02800 PF12823 Domain of unknown function (DUF3817) CLD04_02805 PF01037 Lrp/AsnC ligand binding domain CLD04_02810 PF01131 DNA topoisomerase CLD04_02810 PF01751 Toprim domain CLD04_02825 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) CLD04_02845 PF01566 Natural resistance-associated macrophage protein CLD04_02850 PF04226 Transglycosylase associated protein CLD04_02855 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) CLD04_02860 PF12787 EcsC protein family CLD04_02865 PF10685 Stress-induced bacterial acidophilic repeat motif CLD04_02865 PF00477 Small hydrophilic plant seed protein CLD04_02870 PF07883 Cupin domain CLD04_02875 PF16291 Domain of unknown function (DUF4937 CLD04_02880 PF05067 Manganese containing catalase CLD04_02885 PF03480 Bacterial extracellular solute-binding protein, family 7 CLD04_02890 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLD04_02890 PF17203 Single cache domain 3 CLD04_02890 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CLD04_02895 PF00072 Response regulator receiver domain CLD04_02895 PF08279 HTH domain CLD04_02900 PF00375 Sodium:dicarboxylate symporter family CLD04_02905 PF01594 AI-2E family transporter CLD04_02910 PF00005 ABC transporter CLD04_02925 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CLD04_02925 PF02770 Acyl-CoA dehydrogenase, middle domain CLD04_02925 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLD04_02930 PF13040 Fur-regulated basic protein B CLD04_02940 PF01545 Cation efflux family CLD04_02940 PF16916 Dimerisation domain of Zinc Transporter CLD04_02945 PF00085 Thioredoxin CLD04_02950 PF07478 D-ala D-ala ligase C-terminus CLD04_02950 PF01820 D-ala D-ala ligase N-terminus CLD04_02955 PF08245 Mur ligase middle domain CLD04_02955 PF02875 Mur ligase family, glutamate ligase domain CLD04_02955 PF01225 Mur ligase family, catalytic domain CLD04_02965 PF00271 Helicase conserved C-terminal domain CLD04_02965 PF00270 DEAD/DEAH box helicase CLD04_02970 PF03703 Bacterial PH domain CLD04_02975 PF03703 Bacterial PH domain CLD04_02980 PF01694 Rhomboid family CLD04_02985 PF01648 4'-phosphopantetheinyl transferase superfamily CLD04_02995 PF01168 Alanine racemase, N-terminal domain CLD04_02995 PF00842 Alanine racemase, C-terminal domain CLD04_03000 PF01402 Ribbon-helix-helix protein, copG family CLD04_03005 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system CLD04_03010 PF01740 STAS domain CLD04_03010 PF08678 Rsbr N terminal CLD04_03015 PF01740 STAS domain CLD04_03020 PF13581 Histidine kinase-like ATPase domain CLD04_03025 PF07228 Stage II sporulation protein E (SpoIIE) CLD04_03025 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain CLD04_03030 PF01740 STAS domain CLD04_03035 PF13581 Histidine kinase-like ATPase domain CLD04_03040 PF04545 Sigma-70, region 4 CLD04_03040 PF04542 Sigma-70 region 2 CLD04_03040 PF04539 Sigma-70 region 3 CLD04_03045 PF07228 Stage II sporulation protein E (SpoIIE) CLD04_03050 PF17674 HHH domain CLD04_03050 PF09371 Tex-like protein N-terminal domain CLD04_03050 PF16921 Tex protein YqgF-like domain CLD04_03050 PF00575 S1 RNA binding domain CLD04_03060 PF17283 SprT-like zinc ribbon domain CLD04_03060 PF10263 SprT-like family CLD04_03100 PF14659 Phage integrase, N-terminal SAM-like domain CLD04_03100 PF00589 Phage integrase family CLD04_03110 PF01381 Helix-turn-helix CLD04_03140 PF18106 Rolling Circle replication initiation protein N-terminal domain CLD04_03140 PF02486 Replication initiation factor CLD04_03175 PF12642 Conjugative transposon protein TcpC CLD04_03195 PF08960 Domain of unknown function (DUF1874) CLD04_03205 PF00877 NlpC/P60 family CLD04_03215 PF14729 Domain of unknown function with cystatin-like fold (DUF4467) CLD04_03225 PF18801 response regulator aspartate phosphatase H, N terminal CLD04_03250 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH CLD04_03250 PF04740 LXG domain of WXG superfamily CLD04_03255 PF01381 Helix-turn-helix CLD04_03265 PF00487 Fatty acid desaturase CLD04_03270 PF00313 'Cold-shock' DNA-binding domain CLD04_03275 PF02559 CarD-like/TRCF domain CLD04_03285 PF00892 EamA-like transporter family CLD04_03290 PF12833 Helix-turn-helix domain CLD04_03290 PF02311 AraC-like ligand binding domain CLD04_03295 PF00892 EamA-like transporter family CLD04_03300 PF12833 Helix-turn-helix domain CLD04_03300 PF06445 GyrI-like small molecule binding domain CLD04_03305 PF00392 Bacterial regulatory proteins, gntR family CLD04_03305 PF00155 Aminotransferase class I and II CLD04_03315 PF08818 Domain of unknown function (DU1801) CLD04_03330 PF00381 PTS HPr component phosphorylation site CLD04_03335 PF00440 Bacterial regulatory proteins, tetR family CLD04_03340 PF00892 EamA-like transporter family CLD04_03345 PF00155 Aminotransferase class I and II CLD04_03345 PF00392 Bacterial regulatory proteins, gntR family CLD04_03350 PF01575 MaoC like domain CLD04_03355 PF06821 Serine hydrolase CLD04_03360 PF01638 HxlR-like helix-turn-helix CLD04_03365 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CLD04_03365 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CLD04_03370 PF01022 Bacterial regulatory protein, arsR family CLD04_03375 PF02040 Arsenical pump membrane protein CLD04_03380 PF01451 Low molecular weight phosphotyrosine protein phosphatase CLD04_03385 PF12746 GNAT acetyltransferase CLD04_03390 PF00892 EamA-like transporter family CLD04_03395 PF00392 Bacterial regulatory proteins, gntR family CLD04_03395 PF00155 Aminotransferase class I and II CLD04_03400 PF01613 Flavin reductase like domain CLD04_03410 PF02627 Carboxymuconolactone decarboxylase family CLD04_03425 PF07730 Histidine kinase CLD04_03425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLD04_03430 PF00072 Response regulator receiver domain CLD04_03430 PF00196 Bacterial regulatory proteins, luxR family CLD04_03440 PF12697 Alpha/beta hydrolase family CLD04_03445 PF04474 Protein of unknown function (DUF554) CLD04_03450 PF06445 GyrI-like small molecule binding domain CLD04_03450 PF13411 MerR HTH family regulatory protein CLD04_03470 PF01545 Cation efflux family CLD04_03470 PF16916 Dimerisation domain of Zinc Transporter CLD04_03475 PF00881 Nitroreductase family CLD04_03480 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLD04_03485 PF07681 DoxX CLD04_03490 PF00085 Thioredoxin CLD04_03495 PF10676 Spore germination protein gerPA/gerPF CLD04_03500 PF10676 Spore germination protein gerPA/gerPF CLD04_03505 PF04239 Protein of unknown function (DUF421) CLD04_03510 PF04239 Protein of unknown function (DUF421) CLD04_03515 PF00011 Hsp20/alpha crystallin family CLD04_03520 PF10676 Spore germination protein gerPA/gerPF CLD04_03525 PF10676 Spore germination protein gerPA/gerPF CLD04_03530 PF00440 Bacterial regulatory proteins, tetR family CLD04_03535 PF13564 DoxX-like family CLD04_03540 PF00583 Acetyltransferase (GNAT) family CLD04_03550 PF00324 Amino acid permease CLD04_03560 PF01047 MarR family CLD04_03565 PF03176 MMPL family CLD04_03570 PF00881 Nitroreductase family CLD04_03575 PF01047 MarR family CLD04_03580 PF07690 Major Facilitator Superfamily CLD04_03585 PF01925 Sulfite exporter TauE/SafE CLD04_03590 PF00392 Bacterial regulatory proteins, gntR family CLD04_03590 PF07729 FCD domain CLD04_03595 PF00704 Glycosyl hydrolases family 18 CLD04_03595 PF01476 LysM domain CLD04_03600 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase CLD04_03605 PF11611 Domain of unknown function (DUF4352) CLD04_03605 PF08139 Prokaryotic membrane lipoprotein lipid attachment site CLD04_03610 PF00245 Alkaline phosphatase CLD04_03615 PF08818 Domain of unknown function (DU1801) CLD04_03620 PF16302 Domain of unknown function (DUF4944) CLD04_03625 PF00583 Acetyltransferase (GNAT) family CLD04_03630 PF01966 HD domain CLD04_03635 PF07563 Protein of unknown function (DUF1541) CLD04_03640 PF07690 Major Facilitator Superfamily CLD04_03645 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CLD04_03650 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CLD04_03655 PF02378 Phosphotransferase system, EIIC CLD04_03660 PF00232 Glycosyl hydrolase family 1 CLD04_03665 PF07702 UTRA domain CLD04_03665 PF00392 Bacterial regulatory proteins, gntR family CLD04_03670 PF00480 ROK family CLD04_03675 PF01238 Phosphomannose isomerase type I CLD04_03680 PF02156 Glycosyl hydrolase family 26 CLD04_03725 PF02769 AIR synthase related protein, C-terminal domain CLD04_03725 PF00586 AIR synthase related protein, N-terminal domain CLD04_03730 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CLD04_03735 PF00814 Glycoprotease family CLD04_03740 PF00583 Acetyltransferase (GNAT) family CLD04_03745 PF00814 Glycoprotease family CLD04_03750 PF00005 ABC transporter CLD04_03750 PF16326 ABC transporter C-terminal domain CLD04_03750 PF12848 ABC transporter CLD04_03755 PF01967 MoaC family CLD04_03760 PF02629 CoA binding domain CLD04_03760 PF06971 Putative DNA-binding protein N-terminus CLD04_03765 PF02416 mttA/Hcf106 family CLD04_03770 PF00902 Sec-independent protein translocase protein (TatC) CLD04_03780 PF14146 Domain of unknown function (DUF4305) CLD04_03785 PF02517 CPBP intramembrane metalloprotease CLD04_03790 PF00166 Chaperonin 10 Kd subunit CLD04_03795 PF00118 TCP-1/cpn60 chaperonin family CLD04_03800 PF08924 Domain of unknown function (DUF1906) CLD04_03800 PF01471 Putative peptidoglycan binding domain CLD04_03815 PF13176 Tetratricopeptide repeat CLD04_03815 PF00931 NB-ARC domain CLD04_03820 PF08240 Alcohol dehydrogenase GroES-like domain CLD04_03820 PF00107 Zinc-binding dehydrogenase CLD04_03830 PF00294 pfkB family carbohydrate kinase CLD04_03835 PF04012 PspA/IM30 family CLD04_03840 PF08271 TFIIB zinc-binding CLD04_03845 PF04536 TPM domain CLD04_03850 PF13421 SPFH domain-Band 7 family CLD04_03860 PF00083 Sugar (and other) transporter CLD04_03865 PF00107 Zinc-binding dehydrogenase CLD04_03865 PF08240 Alcohol dehydrogenase GroES-like domain CLD04_03870 PF03330 Lytic transglycolase CLD04_03875 PF07676 WD40-like Beta Propeller Repeat CLD04_03885 PF14169 Cold-inducible protein YdjO CLD04_03890 PF12697 Alpha/beta hydrolase family CLD04_03900 PF07731 Multicopper oxidase CLD04_03900 PF00394 Multicopper oxidase CLD04_03900 PF07732 Multicopper oxidase CLD04_03905 PF00324 Amino acid permease CLD04_03915 PF01545 Cation efflux family CLD04_03915 PF16916 Dimerisation domain of Zinc Transporter CLD04_03920 PF17863 AAA lid domain CLD04_03920 PF07726 ATPase family associated with various cellular activities (AAA) CLD04_03925 PF01882 Protein of unknown function DUF58 CLD04_03930 PF01841 Transglutaminase-like superfamily CLD04_03930 PF11992 Domain of unknown function (DUF3488) CLD04_03930 PF13559 Domain of unknown function (DUF4129) CLD04_03935 PF00117 Glutamine amidotransferase class-I CLD04_03935 PF00958 GMP synthase C terminal domain CLD04_03935 PF02540 NAD synthase CLD04_03945 PF00860 Permease family CLD04_03955 PF13076 Fur-regulated basic protein A CLD04_03960 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CLD04_03965 PF14044 NETI protein CLD04_03970 PF00731 AIR carboxylase CLD04_03975 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CLD04_03975 PF02222 ATP-grasp domain CLD04_03980 PF10397 Adenylosuccinate lyase C-terminus CLD04_03980 PF00206 Lyase CLD04_03985 PF01259 SAICAR synthetase CLD04_03990 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase CLD04_04000 PF00586 AIR synthase related protein, N-terminal domain CLD04_04000 PF02769 AIR synthase related protein, C-terminal domain CLD04_04000 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CLD04_04005 PF00156 Phosphoribosyl transferase domain CLD04_04010 PF02769 AIR synthase related protein, C-terminal domain CLD04_04010 PF00586 AIR synthase related protein, N-terminal domain CLD04_04015 PF00551 Formyl transferase CLD04_04020 PF01808 AICARFT/IMPCHase bienzyme CLD04_04020 PF02142 MGS-like domain CLD04_04025 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CLD04_04025 PF02843 Phosphoribosylglycinamide synthetase, C domain CLD04_04025 PF02844 Phosphoribosylglycinamide synthetase, N domain CLD04_04030 PF01037 Lrp/AsnC ligand binding domain CLD04_04035 PF13520 Amino acid permease CLD04_04040 PF11127 Protein of unknown function (DUF2892) CLD04_04045 PF01979 Amidohydrolase family CLD04_04045 PF13382 Adenine deaminase C-terminal domain CLD04_04050 PF17479 Protein of unknown function (DUF3048) C-terminal domain CLD04_04050 PF11258 Protein of unknown function (DUF3048) N-terminal domain CLD04_04055 PF01371 Trp repressor protein CLD04_04060 PF01645 Conserved region in glutamate synthase CLD04_04065 PF01884 PcrB family CLD04_04070 PF13361 UvrD-like helicase C-terminal domain CLD04_04070 PF00580 UvrD/REP helicase N-terminal domain CLD04_04075 PF01653 NAD-dependent DNA ligase adenylation domain CLD04_04075 PF12826 Helix-hairpin-helix motif CLD04_04075 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CLD04_04075 PF03120 NAD-dependent DNA ligase OB-fold domain CLD04_04075 PF00533 BRCA1 C Terminus (BRCT) domain CLD04_04080 PF07537 CamS sex pheromone cAM373 precursor CLD04_04090 PF01636 Phosphotransferase enzyme family CLD04_04095 PF02308 MgtC family CLD04_04100 PF00474 Sodium:solute symporter family CLD04_04105 PF02686 Glu-tRNAGln amidotransferase C subunit CLD04_04110 PF01425 Amidase CLD04_04115 PF02637 GatB domain CLD04_04115 PF02934 GatB/GatE catalytic domain CLD04_04125 PF00873 AcrB/AcrD/AcrF family CLD04_04130 PF00781 Diacylglycerol kinase catalytic domain CLD04_04135 PF01938 TRAM domain CLD04_04135 PF05958 tRNA (Uracil-5-)-methyltransferase CLD04_04140 PF13408 Recombinase zinc beta ribbon domain CLD04_04140 PF07508 Recombinase CLD04_04145 PF18010 Cry35Ab1 HTH C-terminal domain CLD04_04145 PF00239 Resolvase, N terminal domain CLD04_04160 PF10544 T5orf172 domain CLD04_04175 PF04634 Protein of unknown function, DUF600 CLD04_04180 PF04740 LXG domain of WXG superfamily CLD04_04190 PF18801 response regulator aspartate phosphatase H, N terminal CLD04_04190 PF13176 Tetratricopeptide repeat CLD04_04200 PF01709 Transcriptional regulator CLD04_04210 PF00440 Bacterial regulatory proteins, tetR family CLD04_04215 PF12680 SnoaL-like domain CLD04_04225 PF11007 Spore coat associated protein JA (CotJA) CLD04_04230 PF12652 CotJB protein CLD04_04235 PF05067 Manganese containing catalase CLD04_04240 PF00583 Acetyltransferase (GNAT) family CLD04_04250 PF04854 Protein of unknown function, DUF624 CLD04_04255 PF06580 Histidine kinase CLD04_04255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLD04_04255 PF00672 HAMP domain CLD04_04255 PF02743 Cache domain CLD04_04260 PF13416 Bacterial extracellular solute-binding protein CLD04_04265 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_04270 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_04275 PF07470 Glycosyl Hydrolase Family 88 CLD04_04280 PF12833 Helix-turn-helix domain CLD04_04285 PF13472 GDSL-like Lipase/Acylhydrolase family CLD04_04290 PF09224 Domain of unknown function (DUF1961) CLD04_04295 PF04854 Protein of unknown function, DUF624 CLD04_04305 PF01839 FG-GAP repeat CLD04_04305 PF18370 Rhamnogalacturonan I lyases beta-sheet domain CLD04_04310 PF00657 GDSL-like Lipase/Acylhydrolase CLD04_04325 PF01547 Bacterial extracellular solute-binding protein CLD04_04330 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_04335 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_04340 PF11975 Family 4 glycosyl hydrolase C-terminal domain CLD04_04340 PF02056 Family 4 glycosyl hydrolase CLD04_04345 PF04239 Protein of unknown function (DUF421) CLD04_04350 PF03992 Antibiotic biosynthesis monooxygenase CLD04_04355 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLD04_04365 PF01740 STAS domain CLD04_04370 PF10055 Uncharacterized small protein (DUF2292) CLD04_04375 PF01027 Inhibitor of apoptosis-promoting Bax1 CLD04_04390 PF01494 FAD binding domain CLD04_04395 PF13037 Domain of unknown function (DUF3898) CLD04_04395 PF13039 Protein of unknown function (DUF3900) CLD04_04400 PF00667 FAD binding domain CLD04_04400 PF00175 Oxidoreductase NAD-binding domain CLD04_04400 PF00258 Flavodoxin CLD04_04400 PF00067 Cytochrome P450 CLD04_04405 PF00884 Sulfatase CLD04_04410 PF00483 Nucleotidyl transferase CLD04_04415 PF16363 GDP-mannose 4,6 dehydratase CLD04_04420 PF03407 Nucleotide-diphospho-sugar transferase CLD04_04425 PF00535 Glycosyl transferase family 2 CLD04_04430 PF03407 Nucleotide-diphospho-sugar transferase CLD04_04435 PF07690 Major Facilitator Superfamily CLD04_04440 PF13419 Haloacid dehalogenase-like hydrolase CLD04_04445 PF13520 Amino acid permease CLD04_04450 PF00171 Aldehyde dehydrogenase family CLD04_04455 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLD04_04460 PF00005 ABC transporter CLD04_04460 PF16326 ABC transporter C-terminal domain CLD04_04460 PF12848 ABC transporter CLD04_04465 PF10787 Uncharacterised protein from bacillus cereus group CLD04_04470 PF13411 MerR HTH family regulatory protein CLD04_04475 PF07690 Major Facilitator Superfamily CLD04_04490 PF00005 ABC transporter CLD04_04490 PF12848 ABC transporter CLD04_04495 PF00270 DEAD/DEAH box helicase CLD04_04495 PF00271 Helicase conserved C-terminal domain CLD04_04500 PF00583 Acetyltransferase (GNAT) family CLD04_04505 PF16884 N-terminal domain of oxidoreductase CLD04_04505 PF00107 Zinc-binding dehydrogenase CLD04_04510 PF00005 ABC transporter CLD04_04515 PF01032 FecCD transport family CLD04_04520 PF01032 FecCD transport family CLD04_04525 PF01497 Periplasmic binding protein CLD04_04530 PF11486 Protein of unknown function (DUF3212) CLD04_04540 PF11181 Heat induced stress protein YflT CLD04_04545 PF00544 Pectate lyase CLD04_04550 PF00939 Sodium:sulfate symporter transmembrane region CLD04_04555 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLD04_04555 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CLD04_04560 PF12431 Transcriptional regulator CLD04_04560 PF00072 Response regulator receiver domain CLD04_04560 PF08279 HTH domain CLD04_04565 PF03401 Tripartite tricarboxylate transporter family receptor CLD04_04570 PF03600 Citrate transporter CLD04_04575 PF00753 Metallo-beta-lactamase superfamily CLD04_04580 PF02898 Nitric oxide synthase, oxygenase domain CLD04_04585 PF00708 Acylphosphatase CLD04_04590 PF03473 MOSC domain CLD04_04590 PF03475 3-alpha domain CLD04_04595 PF11121 Protein of unknown function (DUF2639) CLD04_04605 PF11588 Protein of unknown function (DUF3243) CLD04_04610 PF00557 Metallopeptidase family M24 CLD04_04615 PF02378 Phosphotransferase system, EIIC CLD04_04615 PF00367 phosphotransferase system, EIIB CLD04_04620 PF00884 Sulfatase CLD04_04630 PF09350 Domain of unknown function (DUF1992) CLD04_04645 PF02378 Phosphotransferase system, EIIC CLD04_04645 PF00367 phosphotransferase system, EIIB CLD04_04650 PF16657 Maltogenic Amylase, C-terminal domain CLD04_04650 PF00128 Alpha amylase, catalytic domain CLD04_04655 PF00392 Bacterial regulatory proteins, gntR family CLD04_04655 PF07702 UTRA domain CLD04_04660 PF00881 Nitroreductase family CLD04_04665 PF00149 Calcineurin-like phosphoesterase CLD04_04665 PF02872 5'-nucleotidase, C-terminal domain CLD04_04670 PF01965 DJ-1/PfpI family CLD04_04675 PF07690 Major Facilitator Superfamily CLD04_04680 PF06569 Protein of unknown function (DUF1128) CLD04_04685 PF01451 Low molecular weight phosphotyrosine protein phosphatase CLD04_04695 PF03631 Virulence factor BrkB CLD04_04700 PF07690 Major Facilitator Superfamily CLD04_04705 PF01699 Sodium/calcium exchanger protein CLD04_04710 PF14167 YfkD-like protein CLD04_04715 PF00924 Mechanosensitive ion channel CLD04_04720 PF08756 YfkB-like domain CLD04_04720 PF04055 Radical SAM superfamily CLD04_04730 PF01522 Polysaccharide deacetylase CLD04_04740 PF01544 CorA-like Mg2+ transporter protein CLD04_04745 PF00730 HhH-GPD superfamily base excision DNA repair protein CLD04_04750 PF01938 TRAM domain CLD04_04750 PF05958 tRNA (Uracil-5-)-methyltransferase CLD04_04755 PF14118 YfzA-like protein CLD04_04760 PF01207 Dihydrouridine synthase (Dus) CLD04_04775 PF00676 Dehydrogenase E1 component CLD04_04780 PF02779 Transketolase, pyrimidine binding domain CLD04_04780 PF02780 Transketolase, C-terminal domain CLD04_04785 PF00364 Biotin-requiring enzyme CLD04_04785 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CLD04_04785 PF02817 e3 binding domain CLD04_04790 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLD04_04790 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CLD04_04795 PF01590 GAF domain CLD04_04795 PF02954 Bacterial regulatory protein, Fis family CLD04_04795 PF00158 Sigma-54 interaction domain CLD04_04800 PF08141 Small acid-soluble spore protein H family CLD04_04805 PF02694 Uncharacterised BCR, YnfA/UPF0060 family CLD04_04810 PF17353 Family of unknown function (DUF5381) CLD04_04825 PF06013 Proteins of 100 residues with WXG CLD04_04830 PF02056 Family 4 glycosyl hydrolase CLD04_04830 PF11975 Family 4 glycosyl hydrolase C-terminal domain CLD04_04835 PF01418 Helix-turn-helix domain, rpiR family CLD04_04835 PF01380 SIS domain CLD04_04840 PF00367 phosphotransferase system, EIIB CLD04_04840 PF02378 Phosphotransferase system, EIIC CLD04_04845 PF00005 ABC transporter CLD04_04845 PF00664 ABC transporter transmembrane region CLD04_04850 PF00664 ABC transporter transmembrane region CLD04_04850 PF00005 ABC transporter CLD04_04855 PF07681 DoxX CLD04_04860 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLD04_04865 PF12833 Helix-turn-helix domain CLD04_04865 PF02311 AraC-like ligand binding domain CLD04_04870 PF00083 Sugar (and other) transporter CLD04_04875 PF01261 Xylose isomerase-like TIM barrel CLD04_04880 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CLD04_04880 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CLD04_04885 PF07730 Histidine kinase CLD04_04890 PF00196 Bacterial regulatory proteins, luxR family CLD04_04890 PF00072 Response regulator receiver domain CLD04_04900 PF00005 ABC transporter CLD04_04920 PF03551 Transcriptional regulator PadR-like family CLD04_04920 PF10400 Virulence activator alpha C-term CLD04_04925 PF01674 Lipase (class 2) CLD04_04930 PF01757 Acyltransferase family CLD04_04935 PF12867 DinB superfamily CLD04_04940 PF07690 Major Facilitator Superfamily CLD04_04945 PF01047 MarR family CLD04_04950 PF03706 Lysylphosphatidylglycerol synthase TM region CLD04_04950 PF09924 Uncharacterised conserved protein (DUF2156) CLD04_04955 PF01497 Periplasmic binding protein CLD04_04960 PF01032 FecCD transport family CLD04_04965 PF01032 FecCD transport family CLD04_04970 PF02567 Phenazine biosynthesis-like protein CLD04_04975 PF00881 Nitroreductase family CLD04_04980 PF14151 YfhD-like protein CLD04_04985 PF14152 YfhE-like protein CLD04_04990 PF01370 NAD dependent epimerase/dehydratase family CLD04_04990 PF08338 Domain of unknown function (DUF1731) CLD04_04995 PF02631 RecX family CLD04_05000 PF08838 Protein of unknown function (DUF1811) CLD04_05005 PF07690 Major Facilitator Superfamily CLD04_05010 PF08176 Small acid-soluble spore protein K family CLD04_05015 PF14043 WVELL protein CLD04_05025 PF08239 Bacterial SH3 domain CLD04_05030 PF13630 SdpI/YhfL protein family CLD04_05035 PF00561 alpha/beta hydrolase fold CLD04_05040 PF00535 Glycosyl transferase family 2 CLD04_05045 PF09586 Bacterial membrane protein YfhO CLD04_05050 PF04307 LexA-binding, inner membrane-associated putative hydrolase CLD04_05055 PF14815 NUDIX domain CLD04_05055 PF00730 HhH-GPD superfamily base excision DNA repair protein CLD04_05070 PF04259 Small, acid-soluble spore protein, gamma-type CLD04_05075 PF14182 YgaB-like protein CLD04_05080 PF04167 Protein of unknown function (DUF402) CLD04_05085 PF00664 ABC transporter transmembrane region CLD04_05085 PF00005 ABC transporter CLD04_05090 PF06081 Aromatic acid exporter family member 1 CLD04_05095 PF00202 Aminotransferase class-III CLD04_05100 PF00578 AhpC/TSA family CLD04_05105 PF01475 Ferric uptake regulator family CLD04_05110 PF11023 Zinc-ribbon containing domain CLD04_05115 PF18576 Helix-turn-helix domain CLD04_05115 PF14540 Nucleotidyltransferase-like CLD04_05220 PF07070 SpoOM protein CLD04_05230 PF07875 Coat F domain CLD04_05235 PF03575 Peptidase family S51 CLD04_05240 PF01964 Radical SAM ThiC family CLD04_05240 PF13667 ThiC-associated domain CLD04_05245 PF01565 FAD binding domain CLD04_05245 PF08031 Berberine and berberine like CLD04_05250 PF13040 Fur-regulated basic protein B CLD04_05255 PF00199 Catalase CLD04_05255 PF06628 Catalase-related immune-responsive CLD04_05260 PF00005 ABC transporter CLD04_05265 PF09084 NMT1/THI5 like CLD04_05270 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_05275 PF00296 Luciferase-like monooxygenase CLD04_05285 PF00253 Ribosomal protein S14p/S29e CLD04_05295 PF01381 Helix-turn-helix CLD04_05310 PF08331 Domain of unknown function (DUF1730) CLD04_05315 PF12671 Putative amidase domain CLD04_05320 PF00588 SpoU rRNA Methylase family CLD04_05325 PF13171 Protein of unknown function (DUF4004) CLD04_05330 PF04519 Polymer-forming cytoskeletal CLD04_05340 PF08298 PrkA AAA domain CLD04_05340 PF06798 PrkA serine protein kinase C-terminal domain CLD04_05345 PF04285 Protein of unknown function (DUF444) CLD04_05350 PF01047 MarR family CLD04_05360 PF07690 Major Facilitator Superfamily CLD04_05365 PF03358 NADPH-dependent FMN reductase CLD04_05385 PF00392 Bacterial regulatory proteins, gntR family CLD04_05390 PF00005 ABC transporter CLD04_05395 PF00005 ABC transporter CLD04_05400 PF12679 ABC-2 family transporter protein CLD04_05405 PF00313 'Cold-shock' DNA-binding domain CLD04_05415 PF03180 NLPA lipoprotein CLD04_05420 PF07694 5TMR of 5TMR-LYT CLD04_05420 PF00990 Diguanylate cyclase, GGDEF domain CLD04_05425 PF00375 Sodium:dicarboxylate symporter family CLD04_05435 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) CLD04_05450 PF02872 5'-nucleotidase, C-terminal domain CLD04_05450 PF00746 LPXTG cell wall anchor motif CLD04_05450 PF00149 Calcineurin-like phosphoesterase CLD04_05450 PF00565 Staphylococcal nuclease homologue CLD04_05455 PF04203 Sortase domain CLD04_05460 PF01479 S4 domain CLD04_05460 PF00849 RNA pseudouridylate synthase CLD04_05465 PF17326 Family of unknown function (DUF5365) CLD04_05470 PF00571 CBS domain CLD04_05475 PF13419 Haloacid dehalogenase-like hydrolase CLD04_05480 PF00583 Acetyltransferase (GNAT) family CLD04_05480 PF00795 Carbon-nitrogen hydrolase CLD04_05485 PF00202 Aminotransferase class-III CLD04_05490 PF04309 Glycerol-3-phosphate responsive antiterminator CLD04_05495 PF00230 Major intrinsic protein CLD04_05500 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CLD04_05500 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CLD04_05505 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CLD04_05505 PF01266 FAD dependent oxidoreductase CLD04_05510 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CLD04_05510 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CLD04_05510 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CLD04_05510 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CLD04_05515 PF13185 GAF domain CLD04_05515 PF07730 Histidine kinase CLD04_05520 PF00072 Response regulator receiver domain CLD04_05520 PF00196 Bacterial regulatory proteins, luxR family CLD04_05525 PF03358 NADPH-dependent FMN reductase CLD04_05530 PF14148 YhdB-like protein CLD04_05535 PF13028 Protein of unknown function (DUF3889) CLD04_05540 PF00877 NlpC/P60 family CLD04_05540 PF01476 LysM domain CLD04_05545 PF02082 Transcriptional regulator CLD04_05550 PF05552 Conserved TM helix CLD04_05555 PF04293 SpoVR like protein CLD04_05560 PF00245 Alkaline phosphatase CLD04_05565 PF00877 NlpC/P60 family CLD04_05565 PF01476 LysM domain CLD04_05570 PF03466 LysR substrate binding domain CLD04_05570 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLD04_05575 PF00285 Citrate synthase, C-terminal domain CLD04_05585 PF13520 Amino acid permease CLD04_05590 PF00209 Sodium:neurotransmitter symporter family CLD04_05595 PF00155 Aminotransferase class I and II CLD04_05595 PF00392 Bacterial regulatory proteins, gntR family CLD04_05600 PF00583 Acetyltransferase (GNAT) family CLD04_05605 PF17453 Sigma-M inhibitor CLD04_05610 PF13791 Sigma factor regulator C-terminal CLD04_05610 PF13800 Sigma factor regulator N-terminal CLD04_05615 PF08281 Sigma-70, region 4 CLD04_05615 PF04542 Sigma-70 region 2 CLD04_05620 PF00248 Aldo/keto reductase family CLD04_05625 PF01553 Acyltransferase CLD04_05635 PF00571 CBS domain CLD04_05635 PF01595 Cyclin M transmembrane N-terminal domain CLD04_05635 PF03471 Transporter associated domain CLD04_05640 PF13411 MerR HTH family regulatory protein CLD04_05645 PF00155 Aminotransferase class I and II CLD04_05650 PF03471 Transporter associated domain CLD04_05650 PF00571 CBS domain CLD04_05650 PF01595 Cyclin M transmembrane N-terminal domain CLD04_05655 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CLD04_05660 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CLD04_05665 PF03009 Glycerophosphoryl diester phosphodiesterase family CLD04_05670 PF17444 Uncharacterized YhdX-like CLD04_05675 PF00924 Mechanosensitive ion channel CLD04_05680 PF02146 Sir2 family CLD04_05685 PF01522 Polysaccharide deacetylase CLD04_05690 PF01063 Amino-transferase class IV CLD04_05695 PF03553 Na+/H+ antiporter family CLD04_05700 PF00582 Universal stress protein family CLD04_05710 PF00005 ABC transporter CLD04_05710 PF00664 ABC transporter transmembrane region CLD04_05715 PF00664 ABC transporter transmembrane region CLD04_05715 PF00005 ABC transporter CLD04_05720 PF13460 NAD(P)H-binding CLD04_05730 PF00269 Small, acid-soluble spore proteins, alpha/beta type CLD04_05735 PF17277 Family of unknown function (DUF5342) CLD04_05740 PF14398 YheC/D like ATP-grasp CLD04_05745 PF14398 YheC/D like ATP-grasp CLD04_05750 PF04286 Protein of unknown function (DUF445) CLD04_05755 PF06133 Control of competence regulator ComK, YlbF/YmcA CLD04_05770 PF04055 Radical SAM superfamily CLD04_05775 PF00999 Sodium/hydrogen exchanger family CLD04_05780 PF02080 TrkA-C domain CLD04_05790 PF00378 Enoyl-CoA hydratase/isomerase CLD04_05795 PF14120 YhzD-like protein CLD04_05800 PF13732 Domain of unknown function (DUF4162) CLD04_05800 PF00005 ABC transporter CLD04_05810 PF00149 Calcineurin-like phosphoesterase CLD04_05815 PF13514 AAA domain CLD04_05820 PF01966 HD domain CLD04_05825 PF14147 Sporulation protein YhaL CLD04_05835 PF09680 Family of unknown function CLD04_05840 PF09680 Family of unknown function CLD04_05850 PF11667 Putative zincin peptidase CLD04_05855 PF08963 Protein of unknown function (DUF1878) CLD04_05860 PF01047 MarR family CLD04_05865 PF12732 YtxH-like protein CLD04_05875 PF17099 Tryptophan transporter TrpP CLD04_05880 PF00266 Aminotransferase class-V CLD04_05885 PF01230 HIT domain CLD04_05890 PF00005 ABC transporter CLD04_05895 PF05975 Bacterial ABC transporter protein EcsB CLD04_05900 PF12787 EcsC protein family CLD04_05905 PF01546 Peptidase family M20/M25/M40 CLD04_05905 PF07687 Peptidase dimerisation domain CLD04_05920 PF03992 Antibiotic biosynthesis monooxygenase CLD04_05925 PF00912 Transglycosylase CLD04_05925 PF00905 Penicillin binding protein transpeptidase domain CLD04_05930 PF01208 Uroporphyrinogen decarboxylase (URO-D) CLD04_05945 PF17932 Tetracyclin repressor-like, C-terminal domain CLD04_05945 PF00440 Bacterial regulatory proteins, tetR family CLD04_05955 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CLD04_05955 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CLD04_05960 PF10086 YhfC intramembrane metalloprotease CLD04_05970 PF05343 M42 glutamyl aminopeptidase CLD04_05975 PF04266 ASCH domain CLD04_05980 PF00375 Sodium:dicarboxylate symporter family CLD04_05985 PF14149 YhfH-like protein CLD04_05990 PF12706 Beta-lactamase superfamily domain CLD04_05995 PF10437 Bacterial lipoate protein ligase C-terminus CLD04_05995 PF03099 Biotin/lipoate A/B protein ligase family CLD04_06000 PF13460 NAD(P)H-binding CLD04_06005 PF00501 AMP-binding enzyme CLD04_06005 PF13193 AMP-binding enzyme C-terminal domain CLD04_06015 PF16491 CAAX prenyl protease N-terminal, five membrane helices CLD04_06015 PF01435 Peptidase family M48 CLD04_06020 PF00082 Subtilase family CLD04_06020 PF05922 Peptidase inhibitor I9 CLD04_06025 PF00583 Acetyltransferase (GNAT) family CLD04_06030 PF00107 Zinc-binding dehydrogenase CLD04_06030 PF08240 Alcohol dehydrogenase GroES-like domain CLD04_06035 PF01497 Periplasmic binding protein CLD04_06040 PF00300 Histidine phosphatase superfamily (branch 1) CLD04_06045 PF02803 Thiolase, C-terminal domain CLD04_06045 PF00108 Thiolase, N-terminal domain CLD04_06050 PF00501 AMP-binding enzyme CLD04_06050 PF13193 AMP-binding enzyme C-terminal domain CLD04_06055 PF02632 BioY family CLD04_06060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLD04_06075 PF08858 IDEAL domain CLD04_06080 PF06338 ComK protein CLD04_06090 PF05901 Excalibur calcium-binding domain CLD04_06095 PF00474 Sodium:solute symporter family CLD04_06100 PF11755 Protein of unknown function (DUF3311) CLD04_06110 PF09335 SNARE associated Golgi protein CLD04_06115 PF10502 Signal peptidase, peptidase S26 CLD04_06120 PF01494 FAD binding domain CLD04_06125 PF01047 MarR family CLD04_06130 PF07690 Major Facilitator Superfamily CLD04_06140 PF05116 Sucrose-6F-phosphate phosphohydrolase CLD04_06150 PF00356 Bacterial regulatory proteins, lacI family CLD04_06155 PF05145 Transition state regulatory protein AbrB CLD04_06160 PF07690 Major Facilitator Superfamily CLD04_06165 PF12793 Sugar transport-related sRNA regulator N-term CLD04_06165 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CLD04_06170 PF03860 Domain of Unknown Function (DUF326) CLD04_06175 PF02915 Rubrerythrin CLD04_06180 PF12705 PD-(D/E)XK nuclease superfamily CLD04_06180 PF13361 UvrD-like helicase C-terminal domain CLD04_06185 PF12705 PD-(D/E)XK nuclease superfamily CLD04_06185 PF00580 UvrD/REP helicase N-terminal domain CLD04_06185 PF13361 UvrD-like helicase C-terminal domain CLD04_06190 PF00149 Calcineurin-like phosphoesterase CLD04_06190 PF12320 Type 5 capsule protein repressor C-terminal domain CLD04_06195 PF13476 AAA domain CLD04_06205 PF10676 Spore germination protein gerPA/gerPF CLD04_06210 PF10970 Spore germination protein GerPE CLD04_06220 PF10737 Spore germination protein GerPC CLD04_06225 PF10803 Spore germination GerPB CLD04_06230 PF10676 Spore germination protein gerPA/gerPF CLD04_06235 PF09388 Spo0E like sporulation regulatory protein CLD04_06240 PF08757 CotH kinase protein CLD04_06245 PF01557 Fumarylacetoacetate (FAA) hydrolase family CLD04_06250 PF07457 Protein of unknown function (DUF1516) CLD04_06255 PF00082 Subtilase family CLD04_06255 PF17936 Bacterial Ig domain CLD04_06260 PF10949 Protein of unknown function (DUF2777) CLD04_06265 PF00733 Asparagine synthase CLD04_06265 PF13537 Glutamine amidotransferase domain CLD04_06270 PF05163 DinB family CLD04_06280 PF01554 MatE CLD04_06285 PF02311 AraC-like ligand binding domain CLD04_06285 PF12833 Helix-turn-helix domain CLD04_06290 PF00356 Bacterial regulatory proteins, lacI family CLD04_06295 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CLD04_06295 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CLD04_06300 PF05163 DinB family CLD04_06305 PF01810 LysE type translocator CLD04_06310 PF00392 Bacterial regulatory proteins, gntR family CLD04_06310 PF00155 Aminotransferase class I and II CLD04_06315 PF13599 Pentapeptide repeats (9 copies) CLD04_06320 PF00561 alpha/beta hydrolase fold CLD04_06320 PF08386 TAP-like protein CLD04_06340 PF04029 2-phosphosulpholactate phosphatase CLD04_06345 PF02679 (2R)-phospho-3-sulfolactate synthase (ComA) CLD04_06350 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CLD04_06355 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CLD04_06355 PF13378 Enolase C-terminal domain-like CLD04_06360 PF13700 Domain of unknown function (DUF4158) CLD04_06360 PF01526 Tn3 transposase DDE domain CLD04_06415 PF03862 SpoVAC/SpoVAEB sporulation membrane protein CLD04_06445 PF07690 Major Facilitator Superfamily CLD04_06450 PF13673 Acetyltransferase (GNAT) domain CLD04_06450 PF18014 Acetyltransferase (GNAT) domain CLD04_06455 PF13673 Acetyltransferase (GNAT) domain CLD04_06460 PF02574 Homocysteine S-methyltransferase CLD04_06460 PF02219 Methylenetetrahydrofolate reductase CLD04_06465 PF04461 Protein of unknown function (DUF520) CLD04_06470 PF13509 S1 domain CLD04_06470 PF17783 CvfB-like winged helix domain CLD04_06485 PF17418 Sporulation delaying protein SdpA CLD04_06490 PF03551 Transcriptional regulator PadR-like family CLD04_06500 PF12650 Domain of unknown function (DUF3784) CLD04_06505 PF02868 Thermolysin metallopeptidase, alpha-helical domain CLD04_06505 PF07504 Fungalysin/Thermolysin Propeptide Motif CLD04_06505 PF03413 Peptidase propeptide and YPEB domain CLD04_06505 PF01447 Thermolysin metallopeptidase, catalytic domain CLD04_06510 PF02645 Uncharacterised protein, DegV family COG1307 CLD04_06515 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CLD04_06515 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CLD04_06520 PF12690 Intracellular proteinase inhibitor CLD04_06525 PF12758 Protein of unknown function (DUF3813) CLD04_06535 PF00326 Prolyl oligopeptidase family CLD04_06540 PF01883 Iron-sulfur cluster assembly protein CLD04_06550 PF01565 FAD binding domain CLD04_06555 PF07690 Major Facilitator Superfamily CLD04_06560 PF01118 Semialdehyde dehydrogenase, NAD binding domain CLD04_06560 PF02774 Semialdehyde dehydrogenase, dimerisation domain CLD04_06565 PF01960 ArgJ family CLD04_06570 PF00696 Amino acid kinase family CLD04_06575 PF00202 Aminotransferase class-III CLD04_06580 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CLD04_06580 PF00117 Glutamine amidotransferase class-I CLD04_06585 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CLD04_06585 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CLD04_06590 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CLD04_06590 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CLD04_06595 PF14168 YjzC-like protein CLD04_06600 PF11151 Protein of unknown function (DUF2929) CLD04_06615 PF02608 ABC transporter substrate-binding protein PnrA-like CLD04_06620 PF10815 ComZ CLD04_06630 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CLD04_06630 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CLD04_06635 PF00109 Beta-ketoacyl synthase, N-terminal domain CLD04_06635 PF02801 Beta-ketoacyl synthase, C-terminal domain CLD04_06640 PF10026 Predicted Zn-dependent protease (DUF2268) CLD04_06645 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLD04_06645 PF00005 ABC transporter CLD04_06650 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLD04_06650 PF00005 ABC transporter CLD04_06655 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CLD04_06660 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_06665 PF12911 N-terminal TM domain of oligopeptide transport permease C CLD04_06665 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_06670 PF12227 Protein of unknown function (DUF3603) CLD04_06675 PF00579 tRNA synthetases class I (W and Y) CLD04_06680 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CLD04_06685 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_06690 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_06690 PF12911 N-terminal TM domain of oligopeptide transport permease C CLD04_06695 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLD04_06695 PF00005 ABC transporter CLD04_06700 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLD04_06700 PF00005 ABC transporter CLD04_06705 PF07690 Major Facilitator Superfamily CLD04_06710 PF13508 Acetyltransferase (GNAT) domain CLD04_06715 PF03960 ArsC family CLD04_06720 PF03741 Integral membrane protein TerC family CLD04_06725 PF05389 Negative regulator of genetic competence (MecA) CLD04_06730 PF06054 Competence protein CoiA-like family CLD04_06735 PF08439 Oligopeptidase F CLD04_06735 PF01432 Peptidase family M3 CLD04_06755 PF01152 Bacterial-like globin CLD04_06760 PF01464 Transglycosylase SLT domain CLD04_06765 PF01928 CYTH domain CLD04_06775 PF04607 Region found in RelA / SpoT proteins CLD04_06780 PF01513 ATP-NAD kinase CLD04_06785 PF00849 RNA pseudouridylate synthase CLD04_06790 PF00149 Calcineurin-like phosphoesterase CLD04_06795 PF02254 TrkA-N domain CLD04_06795 PF00999 Sodium/hydrogen exchanger family CLD04_06795 PF02080 TrkA-C domain CLD04_06800 PF03070 TENA/THI-4/PQQC family CLD04_06805 PF02581 Thiamine monophosphate synthase CLD04_06810 PF01266 FAD dependent oxidoreductase CLD04_06815 PF02597 ThiS family CLD04_06820 PF05690 Thiazole biosynthesis protein ThiG CLD04_06825 PF00899 ThiF family CLD04_06830 PF08543 Phosphomethylpyrimidine kinase CLD04_06840 PF14153 Spore coat protein CotO CLD04_06845 PF10612 Spore coat protein Z CLD04_06850 PF10612 Spore coat protein Z CLD04_06855 PF07552 Spore Coat Protein X and V domain CLD04_06865 PF07552 Spore Coat Protein X and V domain CLD04_06870 PF07098 Protein of unknown function (DUF1360) CLD04_06885 PF14069 Stage VI sporulation protein F CLD04_06890 PF13361 UvrD-like helicase C-terminal domain CLD04_06890 PF00580 UvrD/REP helicase N-terminal domain CLD04_06900 PF13673 Acetyltransferase (GNAT) domain CLD04_06910 PF00756 Putative esterase CLD04_06915 PF01053 Cys/Met metabolism PLP-dependent enzyme CLD04_06920 PF01053 Cys/Met metabolism PLP-dependent enzyme CLD04_06925 PF13302 Acetyltransferase (GNAT) domain CLD04_06930 PF05684 Protein of unknown function (DUF819) CLD04_06940 PF18593 CdiI immunity protein CLD04_06950 PF18593 CdiI immunity protein CLD04_07040 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH CLD04_07040 PF04740 LXG domain of WXG superfamily CLD04_07125 PF18593 CdiI immunity protein CLD04_07130 PF03992 Antibiotic biosynthesis monooxygenase CLD04_07140 PF02368 Bacterial Ig-like domain (group 2) CLD04_07145 PF05043 Mga helix-turn-helix domain CLD04_07145 PF00874 PRD domain CLD04_07145 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CLD04_07145 PF08279 HTH domain CLD04_07150 PF02378 Phosphotransferase system, EIIC CLD04_07150 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CLD04_07150 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CLD04_07155 PF01238 Phosphomannose isomerase type I CLD04_07160 PF11208 Protein of unknown function (DUF2992) CLD04_07165 PF13302 Acetyltransferase (GNAT) domain CLD04_07175 PF04073 Aminoacyl-tRNA editing domain CLD04_07180 PF13783 Domain of unknown function (DUF4177) CLD04_07185 PF14154 Domain of unknown function (DUF4306) CLD04_07195 PF01040 UbiA prenyltransferase family CLD04_07205 PF13739 Deacetylase PdaC CLD04_07205 PF01522 Polysaccharide deacetylase CLD04_07205 PF11738 Protein of unknown function (DUF3298) CLD04_07210 PF10901 Protein of unknown function (DUF2690) CLD04_07215 PF14070 Putative motility protein CLD04_07220 PF10026 Predicted Zn-dependent protease (DUF2268) CLD04_07225 PF10990 Protein of unknown function (DUF2809) CLD04_07230 PF14172 Domain of unknown function (DUF4309) CLD04_07240 PF07849 Protein of unknown function (DUF1641) CLD04_07245 PF11611 Domain of unknown function (DUF4352) CLD04_07250 PF00293 NUDIX domain CLD04_07260 PF00067 Cytochrome P450 CLD04_07265 PF04101 Glycosyltransferase family 28 C-terminal domain CLD04_07275 PF02602 Uroporphyrinogen-III synthase HemD CLD04_07280 PF03649 Uncharacterised protein family (UPF0014) CLD04_07285 PF00005 ABC transporter CLD04_07290 PF13536 Putative multidrug resistance efflux transporter CLD04_07300 PF07849 Protein of unknown function (DUF1641) CLD04_07305 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLD04_07310 PF02614 Glucuronate isomerase CLD04_07320 PF02615 Malate/L-lactate dehydrogenase CLD04_07325 PF00107 Zinc-binding dehydrogenase CLD04_07325 PF08240 Alcohol dehydrogenase GroES-like domain CLD04_07330 PF03786 D-mannonate dehydratase (UxuA) CLD04_07335 PF00106 short chain dehydrogenase CLD04_07340 PF07690 Major Facilitator Superfamily CLD04_07345 PF00356 Bacterial regulatory proteins, lacI family CLD04_07350 PF08125 Mannitol dehydrogenase C-terminal domain CLD04_07350 PF01232 Mannitol dehydrogenase Rossmann domain CLD04_07355 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus CLD04_07355 PF08666 SAF domain CLD04_07360 PF01925 Sulfite exporter TauE/SafE CLD04_07365 PF05163 DinB family CLD04_07370 PF00004 ATPase family associated with various cellular activities (AAA) CLD04_07375 PF18801 response regulator aspartate phosphatase H, N terminal CLD04_07385 PF03795 YCII-related domain CLD04_07390 PF01471 Putative peptidoglycan binding domain CLD04_07390 PF01476 LysM domain CLD04_07390 PF01510 N-acetylmuramoyl-L-alanine amidase CLD04_07395 PF08000 Bacterial PH domain CLD04_07400 PF05908 Poly-gamma-glutamate hydrolase CLD04_07405 PF05067 Manganese containing catalase CLD04_07410 PF06114 IrrE N-terminal-like domain CLD04_07415 PF01381 Helix-turn-helix CLD04_07430 PF01695 IstB-like ATP binding protein CLD04_07445 PF17356 Phage-like element PBSX protein XtrA CLD04_07450 PF08281 Sigma-70, region 4 CLD04_07455 PF03592 Terminase small subunit CLD04_07455 PF10668 Phage terminase small subunit CLD04_07460 PF04466 Phage terminase large subunit CLD04_07460 PF17288 Terminase RNAseH like domain CLD04_07465 PF04860 Phage portal protein CLD04_07470 PF14550 Putative phage serine protease XkdF CLD04_07475 PF05065 Phage capsid family CLD04_07480 PF11436 Protein of unknown function (DUF3199) CLD04_07485 PF12206 Domain of unknown function (DUF3599) CLD04_07490 PF04883 Bacteriophage HK97-gp10, putative tail-component CLD04_07505 PF17481 Phage tail sheath protein beta-sandwich domain CLD04_07505 PF04984 Phage tail sheath protein subtilisin-like domain CLD04_07505 PF17482 Phage tail sheath C-terminal domain CLD04_07510 PF09393 Phage tail tube protein CLD04_07515 PF08890 Phage XkdN-like tail assembly chaperone protein, TAC CLD04_07525 PF01464 Transglycosylase SLT domain CLD04_07530 PF01476 LysM domain CLD04_07540 PF10844 Protein of unknown function (DUF2577) CLD04_07545 PF10934 Protein of unknown function (DUF2634) CLD04_07550 PF04865 Baseplate J-like protein CLD04_07555 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) CLD04_07570 PF09636 XkdW protein CLD04_07575 PF09693 Phage uncharacterised protein (Phage_XkdX) CLD04_07585 PF10779 Haemolysin XhlA CLD04_07590 PF04688 SPP1 phage holin CLD04_07595 PF01510 N-acetylmuramoyl-L-alanine amidase CLD04_07595 PF01471 Putative peptidoglycan binding domain CLD04_07595 PF01476 LysM domain CLD04_07600 PF14185 Antitoxin SpoIISB, type II toxin-antitoxin system CLD04_07605 PF14171 Toxin SpoIISA, type II toxin-antitoxin system CLD04_07610 PF01384 Phosphate transporter family CLD04_07615 PF01865 Protein of unknown function DUF47 CLD04_07620 PF13520 Amino acid permease CLD04_07625 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLD04_07630 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase CLD04_07635 PF00535 Glycosyl transferase family 2 CLD04_07640 PF13180 PDZ domain CLD04_07645 PF03807 NADP oxidoreductase coenzyme F420-dependent CLD04_07645 PF14748 Pyrroline-5-carboxylate reductase dimerisation CLD04_07650 PF04951 D-aminopeptidase CLD04_07655 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_07660 PF12911 N-terminal TM domain of oligopeptide transport permease C CLD04_07660 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_07665 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLD04_07665 PF00005 ABC transporter CLD04_07670 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CLD04_07675 PF02016 LD-carboxypeptidase N-terminal domain CLD04_07675 PF17676 LD-carboxypeptidase C-terminal domain CLD04_07680 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CLD04_07680 PF13378 Enolase C-terminal domain-like CLD04_07685 PF00877 NlpC/P60 family CLD04_07690 PF00005 ABC transporter CLD04_07690 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CLD04_07695 PF10282 Lactonase, 7-bladed beta-propeller CLD04_07705 PF03061 Thioesterase superfamily CLD04_07710 PF00042 Globin CLD04_07710 PF00970 Oxidoreductase FAD-binding domain CLD04_07710 PF00175 Oxidoreductase NAD-binding domain CLD04_07720 PF04239 Protein of unknown function (DUF421) CLD04_07725 PF12867 DinB superfamily CLD04_07730 PF13302 Acetyltransferase (GNAT) domain CLD04_07735 PF00893 Small Multidrug Resistance protein CLD04_07740 PF00893 Small Multidrug Resistance protein CLD04_07745 PF00551 Formyl transferase CLD04_07745 PF01842 ACT domain CLD04_07750 PF00696 Amino acid kinase family CLD04_07750 PF01472 PUA domain CLD04_07755 PF00171 Aldehyde dehydrogenase family CLD04_07760 PF02566 OsmC-like protein CLD04_07765 PF01047 MarR family CLD04_07770 PF02566 OsmC-like protein CLD04_07780 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CLD04_07785 PF00300 Histidine phosphatase superfamily (branch 1) CLD04_07790 PF01717 Cobalamin-independent synthase, Catalytic domain CLD04_07790 PF08267 Cobalamin-independent synthase, N-terminal domain CLD04_07795 PF00082 Subtilase family CLD04_07800 PF01740 STAS domain CLD04_07805 PF02361 Cobalt transport protein CLD04_07810 PF00005 ABC transporter CLD04_07815 PF09819 ABC-type cobalt transport system, permease component CLD04_07820 PF07615 YKOF-related Family CLD04_07825 PF00486 Transcriptional regulatory protein, C terminal CLD04_07825 PF00072 Response regulator receiver domain CLD04_07830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLD04_07830 PF00672 HAMP domain CLD04_07830 PF00512 His Kinase A (phospho-acceptor) domain CLD04_07835 PF03413 Peptidase propeptide and YPEB domain CLD04_07840 PF03413 Peptidase propeptide and YPEB domain CLD04_07845 PF11132 Transcriptional regulator protein (SplA) CLD04_07855 PF00571 CBS domain CLD04_07855 PF03448 MgtE intracellular N domain CLD04_07855 PF01769 Divalent cation transporter CLD04_07860 PF13411 MerR HTH family regulatory protein CLD04_07875 PF01047 MarR family CLD04_07880 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase CLD04_07890 PF00149 Calcineurin-like phosphoesterase CLD04_07900 PF00535 Glycosyl transferase family 2 CLD04_07905 PF01068 ATP dependent DNA ligase domain CLD04_07910 PF02735 Ku70/Ku80 beta-barrel domain CLD04_07915 PF00990 Diguanylate cyclase, GGDEF domain CLD04_07915 PF03707 Bacterial signalling protein N terminal repeat CLD04_07915 PF00563 EAL domain CLD04_07920 PF09335 SNARE associated Golgi protein CLD04_07925 PF03741 Integral membrane protein TerC family CLD04_07930 PF04542 Sigma-70 region 2 CLD04_07935 PF12791 Anti-sigma factor N-terminus CLD04_07940 PF00269 Small, acid-soluble spore proteins, alpha/beta type CLD04_07945 PF08876 Domain of unknown function (DUF1836) CLD04_07950 PF01435 Peptidase family M48 CLD04_07955 PF02386 Cation transport protein CLD04_07970 PF01757 Acyltransferase family CLD04_07975 PF13426 PAS domain CLD04_07975 PF13188 PAS domain CLD04_07975 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLD04_07975 PF00989 PAS fold CLD04_07975 PF00512 His Kinase A (phospho-acceptor) domain CLD04_07980 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CLD04_07980 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CLD04_07985 PF01008 Initiation factor 2 subunit family CLD04_07990 PF01636 Phosphotransferase enzyme family CLD04_07995 PF00795 Carbon-nitrogen hydrolase CLD04_08000 PF00155 Aminotransferase class I and II CLD04_08005 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain CLD04_08005 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain CLD04_08015 PF00596 Class II Aldolase and Adducin N-terminal domain CLD04_08020 PF03079 ARD/ARD' family CLD04_08025 PF06803 Protein of unknown function (DUF1232) CLD04_08030 PF09388 Spo0E like sporulation regulatory protein CLD04_08040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLD04_08040 PF00512 His Kinase A (phospho-acceptor) domain CLD04_08040 PF02743 Cache domain CLD04_08045 PF01047 MarR family CLD04_08050 PF00691 OmpA family CLD04_08050 PF13677 Membrane MotB of proton-channel complex MotA/MotB CLD04_08055 PF01618 MotA/TolQ/ExbB proton channel family CLD04_08060 PF07724 AAA domain (Cdc48 subfamily) CLD04_08060 PF10431 C-terminal, D2-small domain, of ClpB protein CLD04_08060 PF00004 ATPase family associated with various cellular activities (AAA) CLD04_08060 PF17871 AAA lid domain CLD04_08070 PF06508 Queuosine biosynthesis protein QueC CLD04_08075 PF01242 6-pyruvoyl tetrahydropterin synthase CLD04_08080 PF04055 Radical SAM superfamily CLD04_08085 PF14489 QueF-like protein CLD04_08090 PF01638 HxlR-like helix-turn-helix CLD04_08100 PF01476 LysM domain CLD04_08105 PF01476 LysM domain CLD04_08110 PF00704 Glycosyl hydrolases family 18 CLD04_08115 PF11514 Protein of unknown function (DUF3219) CLD04_08120 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) CLD04_08130 PF07486 Cell Wall Hydrolase CLD04_08135 PF01943 Polysaccharide biosynthesis protein CLD04_08140 PF00578 AhpC/TSA family CLD04_08155 PF00557 Metallopeptidase family M24 CLD04_08155 PF01321 Creatinase/Prolidase N-terminal domain CLD04_08160 PF00356 Bacterial regulatory proteins, lacI family CLD04_08160 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CLD04_08165 PF03123 CAT RNA binding domain CLD04_08165 PF00874 PRD domain CLD04_08170 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CLD04_08170 PF00367 phosphotransferase system, EIIB CLD04_08170 PF02378 Phosphotransferase system, EIIC CLD04_08175 PF00381 PTS HPr component phosphorylation site CLD04_08180 PF00391 PEP-utilising enzyme, mobile domain CLD04_08180 PF02896 PEP-utilising enzyme, TIM barrel domain CLD04_08180 PF05524 PEP-utilising enzyme, N-terminal CLD04_08190 PF11132 Transcriptional regulator protein (SplA) CLD04_08200 PF00583 Acetyltransferase (GNAT) family CLD04_08205 PF00672 HAMP domain CLD04_08205 PF02743 Cache domain CLD04_08205 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLD04_08210 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CLD04_08210 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CLD04_08215 PF00188 Cysteine-rich secretory protein family CLD04_08220 PF00905 Penicillin binding protein transpeptidase domain CLD04_08220 PF03717 Penicillin-binding Protein dimerisation domain CLD04_08225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLD04_08225 PF00989 PAS fold CLD04_08225 PF00512 His Kinase A (phospho-acceptor) domain CLD04_08225 PF08447 PAS fold CLD04_08230 PF00155 Aminotransferase class I and II CLD04_08240 PF01584 CheW-like domain CLD04_08240 PF00072 Response regulator receiver domain CLD04_08245 PF14177 YkyB-like protein CLD04_08250 PF07690 Major Facilitator Superfamily CLD04_08255 PF03734 L,D-transpeptidase catalytic domain CLD04_08255 PF01476 LysM domain CLD04_08260 PF00149 Calcineurin-like phosphoesterase CLD04_08260 PF10518 TAT (twin-arginine translocation) pathway signal sequence CLD04_08270 PF10388 EAL-domain associated signalling protein domain CLD04_08270 PF00563 EAL domain CLD04_08275 PF08796 Protein of unknown function (DUF1797) CLD04_08280 PF04308 Ribonuclease H-like CLD04_08285 PF14156 Antirepressor AbbA CLD04_08295 PF03466 LysR substrate binding domain CLD04_08295 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLD04_08300 PF00258 Flavodoxin CLD04_08310 PF00258 Flavodoxin CLD04_08315 PF14602 Hexapeptide repeat of succinyl-transferase CLD04_08315 PF00132 Bacterial transferase hexapeptide (six repeats) CLD04_08315 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal CLD04_08320 PF07687 Peptidase dimerisation domain CLD04_08320 PF01546 Peptidase family M20/M25/M40 CLD04_08325 PF03698 Uncharacterised protein family (UPF0180) CLD04_08335 PF00924 Mechanosensitive ion channel CLD04_08340 PF10417 C-terminal domain of 1-Cys peroxiredoxin CLD04_08340 PF00578 AhpC/TSA family CLD04_08345 PF00578 AhpC/TSA family CLD04_08365 PF12804 MobA-like NTP transferase domain CLD04_08370 PF00899 ThiF family CLD04_08375 PF00994 Probable molybdopterin binding domain CLD04_08375 PF03454 MoeA C-terminal region (domain IV) CLD04_08375 PF03453 MoeA N-terminal region (domain I and II) CLD04_08380 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CLD04_08385 PF02391 MoaE protein CLD04_08390 PF02597 ThiS family CLD04_08395 PF00664 ABC transporter transmembrane region CLD04_08395 PF00005 ABC transporter CLD04_08400 PF00005 ABC transporter CLD04_08400 PF00664 ABC transporter transmembrane region CLD04_08405 PF04893 Yip1 domain CLD04_08410 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CLD04_08415 PF00005 ABC transporter CLD04_08420 PF02687 FtsX-like permease family CLD04_08420 PF12704 MacB-like periplasmic core domain CLD04_08425 PF08220 DeoR-like helix-turn-helix domain CLD04_08425 PF00455 DeoR C terminal sensor domain CLD04_08430 PF00294 pfkB family carbohydrate kinase CLD04_08435 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CLD04_08435 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CLD04_08440 PF10502 Signal peptidase, peptidase S26 CLD04_08450 PF12848 ABC transporter CLD04_08450 PF00005 ABC transporter CLD04_08455 PF08546 Ketopantoate reductase PanE/ApbA C terminal CLD04_08455 PF02558 Ketopantoate reductase PanE/ApbA CLD04_08460 PF02073 Thermophilic metalloprotease (M29) CLD04_08465 PF17447 Uncharacterized YkpC-like CLD04_08475 PF18277 AbrB C-terminal domain CLD04_08475 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CLD04_08480 PF00989 PAS fold CLD04_08480 PF00512 His Kinase A (phospho-acceptor) domain CLD04_08480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLD04_08485 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like CLD04_08490 PF02080 TrkA-C domain CLD04_08490 PF02254 TrkA-N domain CLD04_08495 PF13382 Adenine deaminase C-terminal domain CLD04_08495 PF01979 Amidohydrolase family CLD04_08500 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CLD04_08500 PF17770 Ribonuclease J C-terminal domain CLD04_08500 PF00753 Metallo-beta-lactamase superfamily CLD04_08515 PF01327 Polypeptide deformylase CLD04_08525 PF10368 Putative cell-wall binding lipoprotein CLD04_08530 PF00676 Dehydrogenase E1 component CLD04_08535 PF02780 Transketolase, C-terminal domain CLD04_08535 PF02779 Transketolase, pyrimidine binding domain CLD04_08540 PF00364 Biotin-requiring enzyme CLD04_08540 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CLD04_08540 PF02817 e3 binding domain CLD04_08545 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLD04_08545 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CLD04_08555 PF13790 SR1 protein CLD04_08560 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CLD04_08560 PF01276 Orn/Lys/Arg decarboxylase, major domain CLD04_08565 PF05256 Uncharacterised protein family (UPF0223) CLD04_08570 PF06335 Protein of unknown function (DUF1054) CLD04_08580 PF00459 Inositol monophosphatase family CLD04_08585 PF00583 Acetyltransferase (GNAT) family CLD04_08590 PF04072 Leucine carboxyl methyltransferase CLD04_08595 PF07504 Fungalysin/Thermolysin Propeptide Motif CLD04_08595 PF01447 Thermolysin metallopeptidase, catalytic domain CLD04_08595 PF03413 Peptidase propeptide and YPEB domain CLD04_08595 PF02868 Thermolysin metallopeptidase, alpha-helical domain CLD04_08610 PF04542 Sigma-70 region 2 CLD04_08610 PF08281 Sigma-70, region 4 CLD04_08615 PF13490 Putative zinc-finger CLD04_08625 PF17259 Family of unknown function (DUF5325) CLD04_08635 PF14036 YlaH-like protein CLD04_08640 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) CLD04_08645 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) CLD04_08650 PF02562 PhoH-like protein CLD04_08650 PF13638 PIN domain CLD04_08660 PF04960 Glutaminase CLD04_08665 PF07408 Protein of unknown function (DUF1507) CLD04_08670 PF01098 Cell cycle protein CLD04_08675 PF00682 HMGL-like CLD04_08675 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CLD04_08675 PF00289 Biotin carboxylase, N-terminal domain CLD04_08675 PF02436 Conserved carboxylase domain CLD04_08675 PF02785 Biotin carboxylase C-terminal domain CLD04_08675 PF00364 Biotin-requiring enzyme CLD04_08680 PF02628 Cytochrome oxidase assembly protein CLD04_08685 PF01040 UbiA prenyltransferase family CLD04_08690 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CLD04_08690 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CLD04_08690 PF00034 Cytochrome c CLD04_08695 PF00115 Cytochrome C and Quinol oxidase polypeptide I CLD04_08700 PF00510 Cytochrome c oxidase subunit III CLD04_08705 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CLD04_08710 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) CLD04_08715 PF08868 YugN-like family CLD04_08720 PF00571 CBS domain CLD04_08725 PF14504 CAP-associated N-terminal CLD04_08725 PF00188 Cysteine-rich secretory protein family CLD04_08730 PF14071 Putative coat protein CLD04_08735 PF14003 YlbE-like protein CLD04_08740 PF06133 Control of competence regulator ComK, YlbF/YmcA CLD04_08745 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) CLD04_08755 PF01467 Cytidylyltransferase-like CLD04_08760 PF07670 Nucleoside recognition CLD04_08765 PF01734 Patatin-like phospholipase CLD04_08770 PF05362 Lon protease (S16) C-terminal proteolytic domain CLD04_08770 PF13180 PDZ domain CLD04_08775 PF05636 HIGH Nucleotidyl Transferase CLD04_08785 PF02620 Large ribosomal RNA subunit accumulation protein YceD CLD04_08790 PF01783 Ribosomal L32p protein family CLD04_08800 PF00583 Acetyltransferase (GNAT) family CLD04_08805 PF02558 Ketopantoate reductase PanE/ApbA CLD04_08805 PF08546 Ketopantoate reductase PanE/ApbA C terminal CLD04_08810 PF10079 Bacillithiol biosynthesis BshC CLD04_08815 PF02381 MraZ protein, putative antitoxin-like CLD04_08820 PF01795 MraW methylase family CLD04_08835 PF03793 PASTA domain CLD04_08835 PF03717 Penicillin-binding Protein dimerisation domain CLD04_08835 PF00905 Penicillin binding protein transpeptidase domain CLD04_08840 PF02875 Mur ligase family, glutamate ligase domain CLD04_08840 PF08245 Mur ligase middle domain CLD04_08840 PF01225 Mur ligase family, catalytic domain CLD04_08845 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CLD04_08845 PF00953 Glycosyl transferase family 4 CLD04_08850 PF08245 Mur ligase middle domain CLD04_08850 PF02875 Mur ligase family, glutamate ligase domain CLD04_08855 PF01098 Cell cycle protein CLD04_08860 PF04101 Glycosyltransferase family 28 C-terminal domain CLD04_08860 PF03033 Glycosyltransferase family 28 N-terminal domain CLD04_08865 PF01565 FAD binding domain CLD04_08865 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CLD04_08870 PF08478 POTRA domain, FtsQ-type CLD04_08875 PF05949 Bacterial protein of unknown function (DUF881) CLD04_08880 PF05949 Bacterial protein of unknown function (DUF881) CLD04_08885 PF06947 Protein of unknown function (DUF1290) CLD04_08890 PF02491 SHS2 domain inserted in FTSA CLD04_08895 PF12327 FtsZ family, C-terminal domain CLD04_08895 PF00091 Tubulin/FtsZ family, GTPase domain CLD04_08900 PF00501 AMP-binding enzyme CLD04_08900 PF00550 Phosphopantetheine attachment site CLD04_08900 PF13193 AMP-binding enzyme C-terminal domain CLD04_08900 PF00668 Condensation domain CLD04_08905 PF00501 AMP-binding enzyme CLD04_08905 PF13193 AMP-binding enzyme C-terminal domain CLD04_08905 PF00668 Condensation domain CLD04_08905 PF00550 Phosphopantetheine attachment site CLD04_08910 PF00668 Condensation domain CLD04_08910 PF00501 AMP-binding enzyme CLD04_08910 PF00975 Thioesterase domain CLD04_08910 PF13193 AMP-binding enzyme C-terminal domain CLD04_08910 PF00550 Phosphopantetheine attachment site CLD04_08915 PF13193 AMP-binding enzyme C-terminal domain CLD04_08915 PF00668 Condensation domain CLD04_08915 PF00550 Phosphopantetheine attachment site CLD04_08915 PF00975 Thioesterase domain CLD04_08915 PF00501 AMP-binding enzyme CLD04_08920 PF00501 AMP-binding enzyme CLD04_08920 PF13193 AMP-binding enzyme C-terminal domain CLD04_08920 PF00550 Phosphopantetheine attachment site CLD04_08920 PF00668 Condensation domain CLD04_08925 PF00668 Condensation domain CLD04_08925 PF00550 Phosphopantetheine attachment site CLD04_08925 PF13193 AMP-binding enzyme C-terminal domain CLD04_08925 PF00975 Thioesterase domain CLD04_08925 PF00501 AMP-binding enzyme CLD04_08930 PF00975 Thioesterase domain CLD04_08930 PF00550 Phosphopantetheine attachment site CLD04_08930 PF00668 Condensation domain CLD04_08930 PF13193 AMP-binding enzyme C-terminal domain CLD04_08930 PF00501 AMP-binding enzyme CLD04_08935 PF13193 AMP-binding enzyme C-terminal domain CLD04_08935 PF00668 Condensation domain CLD04_08935 PF00975 Thioesterase domain CLD04_08935 PF00550 Phosphopantetheine attachment site CLD04_08935 PF00501 AMP-binding enzyme CLD04_08940 PF00501 AMP-binding enzyme CLD04_08940 PF13193 AMP-binding enzyme C-terminal domain CLD04_08940 PF00668 Condensation domain CLD04_08940 PF00550 Phosphopantetheine attachment site CLD04_08945 PF00668 Condensation domain CLD04_08945 PF00550 Phosphopantetheine attachment site CLD04_08945 PF00501 AMP-binding enzyme CLD04_08945 PF13193 AMP-binding enzyme C-terminal domain CLD04_08950 PF00975 Thioesterase domain CLD04_08950 PF00501 AMP-binding enzyme CLD04_08950 PF13193 AMP-binding enzyme C-terminal domain CLD04_08950 PF00550 Phosphopantetheine attachment site CLD04_08950 PF00668 Condensation domain CLD04_08955 PF00501 AMP-binding enzyme CLD04_08955 PF13193 AMP-binding enzyme C-terminal domain CLD04_08955 PF00668 Condensation domain CLD04_08955 PF00550 Phosphopantetheine attachment site CLD04_08955 PF00975 Thioesterase domain CLD04_08960 PF00501 AMP-binding enzyme CLD04_08960 PF00550 Phosphopantetheine attachment site CLD04_08960 PF00975 Thioesterase domain CLD04_08960 PF00668 Condensation domain CLD04_08960 PF13193 AMP-binding enzyme C-terminal domain CLD04_08965 PF00501 AMP-binding enzyme CLD04_08965 PF00668 Condensation domain CLD04_08965 PF00550 Phosphopantetheine attachment site CLD04_08965 PF00975 Thioesterase domain CLD04_08965 PF13193 AMP-binding enzyme C-terminal domain CLD04_08975 PF05922 Peptidase inhibitor I9 CLD04_08975 PF00082 Subtilase family CLD04_08980 PF03419 Sporulation factor SpoIIGA CLD04_08985 PF04545 Sigma-70, region 4 CLD04_08985 PF04542 Sigma-70 region 2 CLD04_08990 PF04542 Sigma-70 region 2 CLD04_08990 PF04539 Sigma-70 region 3 CLD04_08990 PF04545 Sigma-70, region 4 CLD04_08995 PF00005 ABC transporter CLD04_09000 PF01546 Peptidase family M20/M25/M40 CLD04_09000 PF07687 Peptidase dimerisation domain CLD04_09005 PF05239 PRC-barrel domain CLD04_09015 PF01168 Alanine racemase, N-terminal domain CLD04_09020 PF04472 Cell division protein SepF CLD04_09025 PF02325 YGGT family CLD04_09030 PF17774 Putative RNA-binding domain in YlmH CLD04_09030 PF01479 S4 domain CLD04_09035 PF05103 DivIVA protein CLD04_09040 PF00133 tRNA synthetases class I (I, L, M and V) CLD04_09040 PF08264 Anticodon-binding domain of tRNA CLD04_09045 PF01258 Prokaryotic dksA/traR C4-type zinc finger CLD04_09050 PF01252 Signal peptidase (SPase) II CLD04_09055 PF01479 S4 domain CLD04_09055 PF00849 RNA pseudouridylate synthase CLD04_09060 PF00156 Phosphoribosyl transferase domain CLD04_09065 PF00860 Permease family CLD04_09070 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CLD04_09070 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CLD04_09075 PF01979 Amidohydrolase family CLD04_09080 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CLD04_09080 PF00117 Glutamine amidotransferase class-I CLD04_09085 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CLD04_09085 PF02142 MGS-like domain CLD04_09085 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CLD04_09090 PF00175 Oxidoreductase NAD-binding domain CLD04_09090 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CLD04_09095 PF01180 Dihydroorotate dehydrogenase CLD04_09100 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CLD04_09105 PF00156 Phosphoribosyl transferase domain CLD04_09110 PF01507 Phosphoadenosine phosphosulfate reductase family CLD04_09115 PF01384 Phosphate transporter family CLD04_09120 PF14306 PUA-like domain CLD04_09120 PF01747 ATP-sulfurylase CLD04_09130 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CLD04_09135 PF01903 CbiX CLD04_09150 PF00689 Cation transporting ATPase, C-terminus CLD04_09150 PF00690 Cation transporter/ATPase, N-terminus CLD04_09155 PF08340 Domain of unknown function (DUF1732) CLD04_09155 PF03755 YicC-like family, N-terminal region CLD04_09160 PF04025 Domain of unknown function (DUF370) CLD04_09165 PF00625 Guanylate kinase CLD04_09170 PF01192 RNA polymerase Rpb6 CLD04_09175 PF02441 Flavoprotein CLD04_09175 PF04127 DNA / pantothenate metabolism flavoprotein CLD04_09180 PF04851 Type III restriction enzyme, res subunit CLD04_09180 PF18319 PriA DNA helicase Cys-rich region (CRR) domain CLD04_09180 PF18074 Primosomal protein N C-terminal domain CLD04_09180 PF00271 Helicase conserved C-terminal domain CLD04_09180 PF17764 3′ DNA-binding domain (3′BD) CLD04_09185 PF01327 Polypeptide deformylase CLD04_09190 PF02911 Formyl transferase, C-terminal domain CLD04_09190 PF00551 Formyl transferase CLD04_09195 PF01189 16S rRNA methyltransferase RsmB/F CLD04_09195 PF01029 NusB family CLD04_09200 PF04055 Radical SAM superfamily CLD04_09210 PF00069 Protein kinase domain CLD04_09210 PF03793 PASTA domain CLD04_09215 PF16745 RsgA N-terminal domain CLD04_09215 PF03193 RsgA GTPase CLD04_09220 PF00834 Ribulose-phosphate 3 epimerase family CLD04_09225 PF04263 Thiamin pyrophosphokinase, catalytic domain CLD04_09225 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain CLD04_09230 PF08183 Stage V sporulation protein family CLD04_09235 PF00830 Ribosomal L28 family CLD04_09240 PF03780 Asp23 family, cell envelope-related function CLD04_09245 PF13684 Dihydroxyacetone kinase family CLD04_09245 PF02734 DAK2 domain CLD04_09250 PF03315 Serine dehydratase beta chain CLD04_09250 PF01842 ACT domain CLD04_09255 PF03313 Serine dehydratase alpha chain CLD04_09260 PF00270 DEAD/DEAH box helicase CLD04_09260 PF00271 Helicase conserved C-terminal domain CLD04_09260 PF17191 RecG wedge domain CLD04_09265 PF03061 Thioesterase superfamily CLD04_09270 PF02504 Fatty acid synthesis protein CLD04_09275 PF00698 Acyl transferase domain CLD04_09285 PF00550 Phosphopantetheine attachment site CLD04_09290 PF00035 Double-stranded RNA binding motif CLD04_09290 PF14622 Ribonuclease-III-like CLD04_09295 PF06470 SMC proteins Flexible Hinge Domain CLD04_09295 PF02463 RecF/RecN/SMC N terminal domain CLD04_09300 PF00448 SRP54-type protein, GTPase domain CLD04_09300 PF02881 SRP54-type protein, helical bundle domain CLD04_09310 PF02369 Bacterial Ig-like domain (group 1) CLD04_09315 PF04297 Putative helix-turn-helix protein, YlxM / p13 like CLD04_09320 PF02978 Signal peptide binding domain CLD04_09320 PF02881 SRP54-type protein, helical bundle domain CLD04_09320 PF00448 SRP54-type protein, GTPase domain CLD04_09325 PF00886 Ribosomal protein S16 CLD04_09335 PF11068 YlqD protein CLD04_09340 PF05239 PRC-barrel domain CLD04_09340 PF01782 RimM N-terminal domain CLD04_09345 PF01746 tRNA (Guanine-1)-methyltransferase CLD04_09350 PF01245 Ribosomal protein L19 CLD04_09355 PF01926 50S ribosome-binding GTPase CLD04_09360 PF01351 Ribonuclease HII CLD04_09370 PF01312 FlhB HrpN YscU SpaS Family CLD04_09375 PF00549 CoA-ligase CLD04_09375 PF08442 ATP-grasp domain CLD04_09380 PF00549 CoA-ligase CLD04_09380 PF02629 CoA binding domain CLD04_09385 PF02481 DNA recombination-mediator protein A CLD04_09390 PF01396 Topoisomerase DNA binding C4 zinc finger CLD04_09390 PF01751 Toprim domain CLD04_09390 PF01131 DNA topoisomerase CLD04_09395 PF01134 Glucose inhibited division protein A CLD04_09400 PF00589 Phage integrase family CLD04_09400 PF02899 Phage integrase, N-terminal SAM-like domain CLD04_09405 PF00227 Proteasome subunit CLD04_09410 PF00004 ATPase family associated with various cellular activities (AAA) CLD04_09410 PF07724 AAA domain (Cdc48 subfamily) CLD04_09410 PF10431 C-terminal, D2-small domain, of ClpB protein CLD04_09415 PF08222 CodY helix-turn-helix domain CLD04_09415 PF06018 CodY GAF-like domain CLD04_09420 PF00460 Flagella basal body rod protein CLD04_09425 PF00460 Flagella basal body rod protein CLD04_09425 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLD04_09430 PF02049 Flagellar hook-basal body complex protein FliE CLD04_09435 PF08345 Flagellar M-ring protein C-terminal CLD04_09435 PF01514 Secretory protein of YscJ/FliF family CLD04_09440 PF01706 FliG C-terminal domain CLD04_09440 PF14842 FliG N-terminal domain CLD04_09440 PF14841 FliG middle domain CLD04_09445 PF02108 Flagellar assembly protein FliH CLD04_09450 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLD04_09450 PF02874 ATP synthase alpha/beta family, beta-barrel domain CLD04_09450 PF18269 T3SS EscN ATPase C-terminal domain CLD04_09455 PF02050 Flagellar FliJ protein CLD04_09460 PF03448 MgtE intracellular N domain CLD04_09465 PF02120 Flagellar hook-length control protein FliK CLD04_09470 PF03963 Flagellar hook capping protein - N-terminal region CLD04_09475 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLD04_09475 PF00460 Flagella basal body rod protein CLD04_09480 PF06289 Flagellar and Swarming motility proteins CLD04_09485 PF03748 Flagellar basal body-associated protein FliL CLD04_09490 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CLD04_09490 PF02154 Flagellar motor switch protein FliM CLD04_09495 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CLD04_09495 PF04509 CheC-like family CLD04_09500 PF00072 Response regulator receiver domain CLD04_09505 PF04347 Flagellar biosynthesis protein, FliO CLD04_09510 PF00813 FliP family CLD04_09515 PF01313 Bacterial export proteins, family 3 CLD04_09520 PF01311 Bacterial export proteins, family 1 CLD04_09525 PF01312 FlhB HrpN YscU SpaS Family CLD04_09530 PF00771 FHIPEP family CLD04_09535 PF00448 SRP54-type protein, GTPase domain CLD04_09540 PF10609 NUBPL iron-transfer P-loop NTPase CLD04_09545 PF00072 Response regulator receiver domain CLD04_09545 PF01339 CheB methylesterase CLD04_09550 PF02895 Signal transducing histidine kinase, homodimeric domain CLD04_09550 PF01584 CheW-like domain CLD04_09550 PF07194 P2 response regulator binding domain CLD04_09550 PF01627 Hpt domain CLD04_09550 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLD04_09555 PF01584 CheW-like domain CLD04_09560 PF04509 CheC-like family CLD04_09565 PF03975 CheD chemotactic sensory transduction CLD04_09570 PF04542 Sigma-70 region 2 CLD04_09570 PF04539 Sigma-70 region 3 CLD04_09570 PF04545 Sigma-70, region 4 CLD04_09580 PF00318 Ribosomal protein S2 CLD04_09585 PF00889 Elongation factor TS CLD04_09590 PF00696 Amino acid kinase family CLD04_09595 PF01765 Ribosome recycling factor CLD04_09600 PF01255 Putative undecaprenyl diphosphate synthase CLD04_09610 PF13288 DXP reductoisomerase C-terminal domain CLD04_09610 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CLD04_09610 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CLD04_09615 PF02163 Peptidase family M50 CLD04_09615 PF17820 PDZ domain CLD04_09620 PF03129 Anticodon binding domain CLD04_09620 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLD04_09620 PF04073 Aminoacyl-tRNA editing domain CLD04_09625 PF14480 DNA polymerase III polC-type N-terminus I CLD04_09625 PF00929 Exonuclease CLD04_09625 PF14579 Helix-hairpin-helix motif CLD04_09625 PF02811 PHP domain CLD04_09625 PF11490 DNA polymerase III polC-type N-terminus II CLD04_09625 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CLD04_09625 PF07733 Bacterial DNA polymerase III alpha NTPase domain CLD04_09630 PF17384 RimP C-terminal SH3 domain CLD04_09630 PF02576 RimP N-terminal domain CLD04_09635 PF08529 NusA N-terminal domain CLD04_09635 PF13184 NusA-like KH domain CLD04_09635 PF00575 S1 RNA binding domain CLD04_09640 PF04296 Protein of unknown function (DUF448) CLD04_09645 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family CLD04_09650 PF11987 Translation-initiation factor 2 CLD04_09650 PF04760 Translation initiation factor IF-2, N-terminal region CLD04_09650 PF00009 Elongation factor Tu GTP binding domain CLD04_09655 PF04456 Protein of unknown function (DUF503) CLD04_09660 PF02033 Ribosome-binding factor A CLD04_09665 PF16198 tRNA pseudouridylate synthase B C-terminal domain CLD04_09665 PF01509 TruB family pseudouridylate synthase (N terminal domain) CLD04_09670 PF01687 Riboflavin kinase CLD04_09670 PF06574 FAD synthetase CLD04_09675 PF00312 Ribosomal protein S15 CLD04_09680 PF03725 3' exoribonuclease family, domain 2 CLD04_09680 PF00013 KH domain CLD04_09680 PF00575 S1 RNA binding domain CLD04_09680 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CLD04_09680 PF01138 3' exoribonuclease family, domain 1 CLD04_09685 PF01522 Polysaccharide deacetylase CLD04_09690 PF05193 Peptidase M16 inactive domain CLD04_09690 PF00675 Insulinase (Peptidase family M16) CLD04_09695 PF05239 PRC-barrel domain CLD04_09700 PF16924 Dipicolinate synthase subunit A N-terminal domain CLD04_09700 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CLD04_09705 PF02441 Flavoprotein CLD04_09710 PF01118 Semialdehyde dehydrogenase, NAD binding domain CLD04_09710 PF02774 Semialdehyde dehydrogenase, dimerisation domain CLD04_09715 PF00696 Amino acid kinase family CLD04_09715 PF13840 ACT domain CLD04_09720 PF00701 Dihydrodipicolinate synthetase family CLD04_09725 PF17770 Ribonuclease J C-terminal domain CLD04_09725 PF00753 Metallo-beta-lactamase superfamily CLD04_09725 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CLD04_09730 PF00574 Clp protease CLD04_09735 PF14035 YlzJ-like protein CLD04_09740 PF09397 Ftsk gamma domain CLD04_09740 PF17854 FtsK alpha domain CLD04_09740 PF01580 FtsK/SpoIIIE family CLD04_09745 PF07702 UTRA domain CLD04_09745 PF00392 Bacterial regulatory proteins, gntR family CLD04_09750 PF07690 Major Facilitator Superfamily CLD04_09755 PF05193 Peptidase M16 inactive domain CLD04_09760 PF05193 Peptidase M16 inactive domain CLD04_09760 PF00675 Insulinase (Peptidase family M16) CLD04_09770 PF11588 Protein of unknown function (DUF3243) CLD04_09775 PF11868 Protein of unknown function (DUF3388) CLD04_09780 PF13464 Domain of unknown function (DUF4115) CLD04_09785 PF01066 CDP-alcohol phosphatidyltransferase CLD04_09790 PF18146 Damage-inducible protein CinA KH domain CLD04_09790 PF00994 Probable molybdopterin binding domain CLD04_09790 PF02464 Competence-damaged protein CLD04_09795 PF00154 recA bacterial DNA recombination protein CLD04_09800 PF00144 Beta-lactamase CLD04_09805 PF12072 Domain of unknown function (DUF3552) CLD04_09805 PF00013 KH domain CLD04_09805 PF01966 HD domain CLD04_09810 PF13277 YmdB-like protein CLD04_09815 PF04232 Stage V sporulation protein S (SpoVS) CLD04_09820 PF00107 Zinc-binding dehydrogenase CLD04_09820 PF08240 Alcohol dehydrogenase GroES-like domain CLD04_09825 PF00155 Aminotransferase class I and II CLD04_09830 PF00919 Uncharacterized protein family UPF0004 CLD04_09830 PF01938 TRAM domain CLD04_09830 PF04055 Radical SAM superfamily CLD04_09835 PF06133 Control of competence regulator ComK, YlbF/YmcA CLD04_09840 PF10628 Outer spore coat protein E (CotE) CLD04_09845 PF05192 MutS domain III CLD04_09845 PF05190 MutS family domain IV CLD04_09845 PF00488 MutS domain V CLD04_09845 PF01624 MutS domain I CLD04_09845 PF05188 MutS domain II CLD04_09850 PF08676 MutL C terminal dimerisation domain CLD04_09850 PF01119 DNA mismatch repair protein, C-terminal domain CLD04_09855 PF14184 Regulatory protein YrvL CLD04_09865 PF00440 Bacterial regulatory proteins, tetR family CLD04_09865 PF13977 BetI-type transcriptional repressor, C-terminal CLD04_09880 PF00082 Subtilase family CLD04_09890 PF05908 Poly-gamma-glutamate hydrolase CLD04_09895 PF02566 OsmC-like protein CLD04_09900 PF00893 Small Multidrug Resistance protein CLD04_09905 PF00893 Small Multidrug Resistance protein CLD04_09915 PF12788 YmaF family CLD04_09925 PF17209 Hfq protein CLD04_09930 PF14157 YmzC-like protein CLD04_09940 PF07972 NrdI Flavodoxin like CLD04_09945 PF00317 Ribonucleotide reductase, all-alpha domain CLD04_09945 PF08343 Ribonucleotide reductase N-terminal CLD04_09945 PF02867 Ribonucleotide reductase, barrel domain CLD04_09950 PF00268 Ribonucleotide reductase, small chain CLD04_09960 PF05036 Sporulation related domain CLD04_09960 PF01520 N-acetylmuramoyl-L-alanine amidase CLD04_09970 PF00004 ATPase family associated with various cellular activities (AAA) CLD04_09970 PF17866 AAA lid domain CLD04_09975 PF13167 GTP-binding GTPase N-terminal CLD04_09975 PF01926 50S ribosome-binding GTPase CLD04_09975 PF16360 GTP-binding GTPase Middle Region CLD04_09980 PF06838 Methionine gamma-lyase CLD04_09985 PF13411 MerR HTH family regulatory protein CLD04_09990 PF00120 Glutamine synthetase, catalytic domain CLD04_09990 PF03951 Glutamine synthetase, beta-Grasp domain CLD04_10000 PF18593 CdiI immunity protein CLD04_10010 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH CLD04_10010 PF04740 LXG domain of WXG superfamily CLD04_10055 PF13302 Acetyltransferase (GNAT) domain CLD04_10090 PF13443 Cro/C1-type HTH DNA-binding domain CLD04_10095 PF13021 Domain of unknown function (DUF3885) CLD04_10125 PF04616 Glycosyl hydrolases family 43 CLD04_10125 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain CLD04_10130 PF00480 ROK family CLD04_10135 PF01261 Xylose isomerase-like TIM barrel CLD04_10140 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CLD04_10140 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CLD04_10155 PF00565 Staphylococcal nuclease homologue CLD04_10160 PF00083 Sugar (and other) transporter CLD04_10165 PF01168 Alanine racemase, N-terminal domain CLD04_10165 PF00842 Alanine racemase, C-terminal domain CLD04_10170 PF10903 Protein of unknown function (DUF2691) CLD04_10175 PF00692 dUTPase CLD04_10190 PF00303 Thymidylate synthase CLD04_10210 PF15493 Domain of unknown function, YrpD CLD04_10215 PF14037 YoqO-like protein CLD04_10225 PF02416 mttA/Hcf106 family CLD04_10235 PF08327 Activator of Hsp90 ATPase homolog 1-like protein CLD04_10245 PF03323 Bacillus/Clostridium GerA spore germination protein CLD04_10250 PF03845 Spore germination protein CLD04_10265 PF13761 Domain of unknown function (DUF4166) CLD04_10270 PF14158 YndJ-like protein CLD04_10280 PF05908 Poly-gamma-glutamate hydrolase CLD04_10285 PF10710 Protein of unknown function (DUF2512) CLD04_10290 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLD04_10300 PF00717 Peptidase S24-like CLD04_10300 PF01726 LexA DNA binding domain CLD04_10305 PF01476 LysM domain CLD04_10310 PF00239 Resolvase, N terminal domain CLD04_10315 PF05979 Bacterial protein of unknown function (DUF896) CLD04_10320 PF02779 Transketolase, pyrimidine binding domain CLD04_10320 PF02780 Transketolase, C-terminal domain CLD04_10320 PF00456 Transketolase, thiamine diphosphate binding domain CLD04_10325 PF10747 Sporulation inhibitor of replication protein SirA CLD04_10330 PF03672 Uncharacterised protein family (UPF0154) CLD04_10335 PF09388 Spo0E like sporulation regulatory protein CLD04_10340 PF02683 Cytochrome C biogenesis protein transmembrane region CLD04_10345 PF00072 Response regulator receiver domain CLD04_10350 PF07301 Protein of unknown function (DUF1453) CLD04_10355 PF11084 Protein of unknown function (DUF2621) CLD04_10365 PF08179 Small acid-soluble spore protein P family CLD04_10375 PF00330 Aconitase family (aconitate hydratase) CLD04_10375 PF00694 Aconitase C-terminal domain CLD04_10380 PF00578 AhpC/TSA family CLD04_10385 PF13040 Fur-regulated basic protein B CLD04_10390 PF08177 Small acid-soluble spore protein N family CLD04_10400 PF03061 Thioesterase superfamily CLD04_10410 PF01521 Iron-sulphur cluster biosynthesis CLD04_10415 PF02660 Glycerol-3-phosphate acyltransferase CLD04_10420 PF13380 CoA binding domain CLD04_10425 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLD04_10425 PF01751 Toprim domain CLD04_10425 PF00986 DNA gyrase B subunit, carboxyl terminus CLD04_10425 PF00204 DNA gyrase B CLD04_10430 PF00521 DNA gyrase/topoisomerase IV, subunit A CLD04_10430 PF03989 DNA gyrase C-terminal domain, beta-propeller CLD04_10440 PF01235 Sodium:alanine symporter family CLD04_10445 PF00150 Cellulase (glycosyl hydrolase family 5) CLD04_10445 PF00942 Cellulose binding domain CLD04_10450 PF17452 Uncharacterized YnfE-like CLD04_10460 PF04616 Glycosyl hydrolases family 43 CLD04_10460 PF03422 Carbohydrate binding module (family 6) CLD04_10465 PF04138 GtrA-like protein CLD04_10470 PF00483 Nucleotidyl transferase CLD04_10475 PF09335 SNARE associated Golgi protein CLD04_10485 PF01039 Carboxyl transferase domain CLD04_10490 PF00378 Enoyl-CoA hydratase/isomerase CLD04_10495 PF00682 HMGL-like CLD04_10500 PF00364 Biotin-requiring enzyme CLD04_10505 PF02785 Biotin carboxylase C-terminal domain CLD04_10505 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CLD04_10505 PF00289 Biotin carboxylase, N-terminal domain CLD04_10510 PF13193 AMP-binding enzyme C-terminal domain CLD04_10510 PF00501 AMP-binding enzyme CLD04_10515 PF02770 Acyl-CoA dehydrogenase, middle domain CLD04_10515 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLD04_10515 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLD04_10525 PF02638 Glycosyl hydrolase-like 10 CLD04_10530 PF07098 Protein of unknown function (DUF1360) CLD04_10535 PF00975 Thioesterase domain CLD04_10535 PF00550 Phosphopantetheine attachment site CLD04_10535 PF00501 AMP-binding enzyme CLD04_10535 PF13193 AMP-binding enzyme C-terminal domain CLD04_10535 PF00668 Condensation domain CLD04_10545 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family CLD04_10550 PF01263 Aldose 1-epimerase CLD04_10555 PF01554 MatE CLD04_10560 PF16800 IseA DL-endopeptidase inhibitor CLD04_10570 PF00589 Phage integrase family CLD04_10575 PF12728 Helix-turn-helix domain CLD04_10590 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster CLD04_10590 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLD04_10595 PF04898 Glutamate synthase central domain CLD04_10595 PF01645 Conserved region in glutamate synthase CLD04_10595 PF01493 GXGXG motif CLD04_10595 PF00310 Glutamine amidotransferases class-II CLD04_10600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLD04_10600 PF03466 LysR substrate binding domain CLD04_10605 PF01472 PUA domain CLD04_10605 PF00696 Amino acid kinase family CLD04_10610 PF03807 NADP oxidoreductase coenzyme F420-dependent CLD04_10610 PF14748 Pyrroline-5-carboxylate reductase dimerisation CLD04_10615 PF02334 Replication terminator protein CLD04_10620 PF00106 short chain dehydrogenase CLD04_10625 PF06103 Bacterial protein of unknown function (DUF948) CLD04_10635 PF13302 Acetyltransferase (GNAT) domain CLD04_10640 PF07690 Major Facilitator Superfamily CLD04_10645 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CLD04_10645 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CLD04_10650 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLD04_10650 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLD04_10655 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CLD04_10655 PF01568 Molydopterin dinucleotide binding domain CLD04_10655 PF00384 Molybdopterin oxidoreductase CLD04_10665 PF00083 Sugar (and other) transporter CLD04_10670 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CLD04_10670 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CLD04_10675 PF01261 Xylose isomerase-like TIM barrel CLD04_10680 PF00356 Bacterial regulatory proteins, lacI family CLD04_10695 PF13217 Protein of unknown function (DUF4025) CLD04_10700 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLD04_10700 PF00672 HAMP domain CLD04_10700 PF05227 CHASE3 domain CLD04_10705 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal CLD04_10705 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal CLD04_10710 PF03330 Lytic transglycolase CLD04_10715 PF06912 Protein of unknown function (DUF1275) CLD04_10720 PF00544 Pectate lyase CLD04_10725 PF02586 SOS response associated peptidase (SRAP) CLD04_10740 PF16302 Domain of unknown function (DUF4944) CLD04_10755 PF04294 VanW like protein CLD04_10765 PF13443 Cro/C1-type HTH DNA-binding domain CLD04_10775 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLD04_10775 PF03466 LysR substrate binding domain CLD04_10780 PF00892 EamA-like transporter family CLD04_10795 PF01965 DJ-1/PfpI family CLD04_10805 PF11518 Protein of unknown function (DUF3221) CLD04_10825 PF00391 PEP-utilising enzyme, mobile domain CLD04_10825 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CLD04_10830 PF00457 Glycosyl hydrolases family 11 CLD04_10840 PF05154 TM2 domain CLD04_10925 PF18801 response regulator aspartate phosphatase H, N terminal CLD04_10965 PF13302 Acetyltransferase (GNAT) domain CLD04_10980 PF04740 LXG domain of WXG superfamily CLD04_10980 PF15652 HNH/Endo VII superfamily toxin with a SHH signature CLD04_10985 PF09346 SMI1 / KNR4 family (SUKH-1) CLD04_10990 PF01593 Flavin containing amine oxidoreductase CLD04_10995 PF01588 Putative tRNA binding domain CLD04_11000 PF12833 Helix-turn-helix domain CLD04_11000 PF07883 Cupin domain CLD04_11005 PF00583 Acetyltransferase (GNAT) family CLD04_11010 PF00440 Bacterial regulatory proteins, tetR family CLD04_11010 PF13305 Tetracyclin repressor-like, C-terminal domain CLD04_11015 PF00753 Metallo-beta-lactamase superfamily CLD04_11020 PF06445 GyrI-like small molecule binding domain CLD04_11025 PF13280 WYL domain CLD04_11025 PF08279 HTH domain CLD04_11035 PF01022 Bacterial regulatory protein, arsR family CLD04_11045 PF04238 Protein of unknown function (DUF420) CLD04_11050 PF18846 Bacterial archaeo-eukaryotic release factor family 5 CLD04_11060 PF17676 LD-carboxypeptidase C-terminal domain CLD04_11060 PF02016 LD-carboxypeptidase N-terminal domain CLD04_11065 PF00487 Fatty acid desaturase CLD04_11070 PF07730 Histidine kinase CLD04_11075 PF00196 Bacterial regulatory proteins, luxR family CLD04_11075 PF00072 Response regulator receiver domain CLD04_11080 PF06725 3D domain CLD04_11080 PF01476 LysM domain CLD04_11085 PF09382 RQC domain CLD04_11085 PF00570 HRDC domain CLD04_11085 PF00271 Helicase conserved C-terminal domain CLD04_11085 PF00270 DEAD/DEAH box helicase CLD04_11085 PF16124 RecQ zinc-binding CLD04_11100 PF02525 Flavodoxin-like fold CLD04_11105 PF01258 Prokaryotic dksA/traR C4-type zinc finger CLD04_11120 PF00011 Hsp20/alpha crystallin family CLD04_11135 PF08000 Bacterial PH domain CLD04_11145 PF00171 Aldehyde dehydrogenase family CLD04_11150 PF13243 Squalene-hopene cyclase C-terminal domain CLD04_11150 PF13249 Squalene-hopene cyclase N-terminal domain CLD04_11155 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CLD04_11155 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CLD04_11160 PF00209 Sodium:neurotransmitter symporter family CLD04_11165 PF01758 Sodium Bile acid symporter family CLD04_11170 PF02817 e3 binding domain CLD04_11170 PF00364 Biotin-requiring enzyme CLD04_11170 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CLD04_11175 PF02779 Transketolase, pyrimidine binding domain CLD04_11175 PF00676 Dehydrogenase E1 component CLD04_11175 PF16870 2-oxoglutarate dehydrogenase C-terminal CLD04_11180 PF00092 von Willebrand factor type A domain CLD04_11185 PF07728 AAA domain (dynein-related subfamily) CLD04_11190 PF00080 Copper/zinc superoxide dismutase (SODC) CLD04_11190 PF13627 Prokaryotic lipoprotein-attachment site CLD04_11195 PF00877 NlpC/P60 family CLD04_11195 PF01476 LysM domain CLD04_11200 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase CLD04_11205 PF10372 Bacterial membrane-spanning protein N-terminus CLD04_11205 PF02457 DisA bacterial checkpoint controller nucleotide-binding CLD04_11210 PF01554 MatE CLD04_11215 PF01740 STAS domain CLD04_11220 PF02585 GlcNAc-PI de-N-acetylase CLD04_11225 PF08830 Protein of unknown function (DUF1806) CLD04_11235 PF00892 EamA-like transporter family CLD04_11255 PF14552 Tautomerase enzyme CLD04_11260 PF01638 HxlR-like helix-turn-helix CLD04_11265 PF00881 Nitroreductase family CLD04_11270 PF01738 Dienelactone hydrolase family CLD04_11275 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLD04_11280 PF11755 Protein of unknown function (DUF3311) CLD04_11285 PF00474 Sodium:solute symporter family CLD04_11295 PF17820 PDZ domain CLD04_11295 PF03572 Peptidase family S41 CLD04_11295 PF01471 Putative peptidoglycan binding domain CLD04_11300 PF08241 Methyltransferase domain CLD04_11310 PF02557 D-alanyl-D-alanine carboxypeptidase CLD04_11315 PF01048 Phosphorylase superfamily CLD04_11325 PF14191 YodL-like CLD04_11330 PF01569 PAP2 superfamily CLD04_11335 PF14162 YozD-like protein CLD04_11355 PF06855 YozE SAM-like fold CLD04_11360 PF14122 YokU-like protein, putative antitoxin CLD04_11370 PF00583 Acetyltransferase (GNAT) family CLD04_11375 PF01546 Peptidase family M20/M25/M40 CLD04_11375 PF07687 Peptidase dimerisation domain CLD04_11380 PF01144 Coenzyme A transferase CLD04_11385 PF01144 Coenzyme A transferase CLD04_11390 PF00202 Aminotransferase class-III CLD04_11400 PF00583 Acetyltransferase (GNAT) family CLD04_11405 PF00535 Glycosyl transferase family 2 CLD04_11420 PF12996 DUF based on E. rectale Gene description (DUF3880) CLD04_11425 PF02333 Phytase CLD04_11430 PF02719 Polysaccharide biosynthesis protein CLD04_11435 PF01641 SelR domain CLD04_11440 PF01625 Peptide methionine sulfoxide reductase CLD04_11445 PF01047 MarR family CLD04_11450 PF01554 MatE CLD04_11455 PF17431 Uncharacterized YmpT-like CLD04_11460 PF09911 Uncharacterized protein conserved in bacteria (DUF2140) CLD04_11465 PF13472 GDSL-like Lipase/Acylhydrolase family CLD04_11470 PF02630 SCO1/SenC CLD04_11475 PF10751 Protein of unknown function (DUF2535) CLD04_11480 PF00291 Pyridoxal-phosphate dependent enzyme CLD04_11480 PF00585 C-terminal regulatory domain of Threonine dehydratase CLD04_11485 PF00158 Sigma-54 interaction domain CLD04_11485 PF08461 Ribonuclease R winged-helix domain CLD04_11490 PF03006 Haemolysin-III related CLD04_11500 PF00186 Dihydrofolate reductase CLD04_11505 PF00303 Thymidylate synthase CLD04_11510 PF04608 Phosphatidylglycerophosphatase A CLD04_11515 PF14005 YpjP-like protein CLD04_11520 PF04445 Putative SAM-dependent methyltransferase CLD04_11525 PF06491 Disulphide isomerase CLD04_11530 PF00920 Dehydratase family CLD04_11535 PF13769 Virulence factor CLD04_11535 PF08712 Scaffold protein Nfu/NifU N terminal CLD04_11540 PF01966 HD domain CLD04_11545 PF00255 Glutathione peroxidase CLD04_11550 PF04204 Homoserine O-succinyltransferase CLD04_11555 PF00534 Glycosyl transferases group 1 CLD04_11555 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase CLD04_11560 PF00313 'Cold-shock' DNA-binding domain CLD04_11570 PF10819 Protein of unknown function (DUF2564) CLD04_11575 PF10782 Zinc-finger CLD04_11580 PF13456 Reverse transcriptase-like CLD04_11585 PF02592 Putative vitamin uptake transporter CLD04_11590 PF13456 Reverse transcriptase-like CLD04_11600 PF01367 5'-3' exonuclease, C-terminal SAM fold CLD04_11600 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CLD04_11610 PF10752 Protein of unknown function (DUF2533) CLD04_11615 PF00350 Dynamin family CLD04_11625 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family CLD04_11630 PF00195 Chalcone and stilbene synthases, N-terminal domain CLD04_11630 PF02797 Chalcone and stilbene synthases, C-terminal domain CLD04_11635 PF00860 Permease family CLD04_11640 PF00156 Phosphoribosyl transferase domain CLD04_11645 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CLD04_11650 PF03812 2-keto-3-deoxygluconate permease CLD04_11655 PF01081 KDPG and KHG aldolase CLD04_11660 PF00294 pfkB family carbohydrate kinase CLD04_11665 PF00356 Bacterial regulatory proteins, lacI family CLD04_11670 PF04962 KduI/IolB family CLD04_11680 PF13307 Helicase C-terminal domain CLD04_11690 PF14139 YpzG-like protein CLD04_11695 PF01170 Putative RNA methylase family UPF0020 CLD04_11695 PF02926 THUMP domain CLD04_11705 PF05103 DivIVA protein CLD04_11710 PF06908 YspA SLOG family CLD04_11715 PF11122 Inner spore coat protein D CLD04_11720 PF13482 RNase_H superfamily CLD04_11725 PF00271 Helicase conserved C-terminal domain CLD04_11725 PF09369 Domain of unknown function (DUF1998) CLD04_11725 PF00270 DEAD/DEAH box helicase CLD04_11730 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CLD04_11740 PF14179 YppG-like protein CLD04_11745 PF14178 YppF-like protein CLD04_11750 PF08807 Bacterial domain of unknown function (DUF1798) CLD04_11755 PF17522 Family of unknown function (DUF5446) CLD04_11765 PF10720 Protein of unknown function (DUF2515) CLD04_11770 PF03838 Recombination protein U CLD04_11775 PF00912 Transglycosylase CLD04_11775 PF00905 Penicillin binding protein transpeptidase domain CLD04_11785 PF00633 Helix-hairpin-helix motif CLD04_11785 PF00730 HhH-GPD superfamily base excision DNA repair protein CLD04_11785 PF10576 Iron-sulfur binding domain of endonuclease III CLD04_11790 PF07261 Replication initiation and membrane attachment CLD04_11795 PF01336 OB-fold nucleic acid binding domain CLD04_11795 PF00152 tRNA synthetases class II (D, K and N) CLD04_11800 PF00155 Aminotransferase class I and II CLD04_11805 PF03413 Peptidase propeptide and YPEB domain CLD04_11805 PF17881 Domain of unknown function (DUF5590) CLD04_11810 PF14084 Protein of unknown function (DUF4264) CLD04_11815 PF00929 Exonuclease CLD04_11815 PF04851 Type III restriction enzyme, res subunit CLD04_11815 PF13307 Helicase C-terminal domain CLD04_11820 PF02261 Aspartate decarboxylase CLD04_11825 PF02569 Pantoate-beta-alanine ligase CLD04_11830 PF02548 Ketopantoate hydroxymethyltransferase CLD04_11835 PF08279 HTH domain CLD04_11835 PF03099 Biotin/lipoate A/B protein ligase family CLD04_11835 PF02237 Biotin protein ligase C terminal domain CLD04_11840 PF12627 Probable RNA and SrmB- binding site of polymerase A CLD04_11840 PF13735 tRNA nucleotidyltransferase domain 2 putative CLD04_11840 PF01743 Poly A polymerase head domain CLD04_11845 PF00534 Glycosyl transferases group 1 CLD04_11845 PF13439 Glycosyltransferase Family 4 CLD04_11850 PF02585 GlcNAc-PI de-N-acetylase CLD04_11855 PF02142 MGS-like domain CLD04_11860 PF01113 Dihydrodipicolinate reductase, N-terminus CLD04_11860 PF05173 Dihydrodipicolinate reductase, C-terminus CLD04_11865 PF03819 MazG nucleotide pyrophosphohydrolase domain CLD04_11870 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CLD04_11870 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CLD04_11875 PF09577 Sporulation protein YpjB (SpoYpjB) CLD04_11880 PF07187 Protein of unknown function (DUF1405) CLD04_11885 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CLD04_11885 PF00032 Cytochrome b(C-terminal)/b6/petD CLD04_11890 PF00033 Cytochrome b/b6/petB CLD04_11895 PF00355 Rieske [2Fe-2S] domain CLD04_11900 PF10673 Protein of unknown function (DUF2487) CLD04_11905 PF08864 UPF0302 domain CLD04_11905 PF08858 IDEAL domain CLD04_11915 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CLD04_11920 PF01842 ACT domain CLD04_11920 PF02153 Prephenate dehydrogenase CLD04_11925 PF00155 Aminotransferase class I and II CLD04_11930 PF00290 Tryptophan synthase alpha chain CLD04_11935 PF00291 Pyridoxal-phosphate dependent enzyme CLD04_11940 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CLD04_11945 PF00218 Indole-3-glycerol phosphate synthase CLD04_11950 PF00591 Glycosyl transferase family, a/b domain CLD04_11950 PF02885 Glycosyl transferase family, helical bundle domain CLD04_11955 PF04715 Anthranilate synthase component I, N terminal region CLD04_11955 PF00425 chorismate binding enzyme CLD04_11960 PF07736 Chorismate mutase type I CLD04_11965 PF01761 3-dehydroquinate synthase CLD04_11970 PF01264 Chorismate synthase CLD04_11975 PF03705 CheR methyltransferase, all-alpha domain CLD04_11975 PF01739 CheR methyltransferase, SAM binding domain CLD04_11980 PF00334 Nucleoside diphosphate kinase CLD04_11985 PF00348 Polyprenyl synthetase CLD04_11990 PF01209 ubiE/COQ5 methyltransferase family CLD04_11995 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 CLD04_12000 PF02081 Tryptophan RNA-binding attenuator protein CLD04_12005 PF01227 GTP cyclohydrolase I CLD04_12010 PF00216 Bacterial DNA-binding protein CLD04_12015 PF09547 Stage IV sporulation protein A (spore_IV_A) CLD04_12025 PF10966 Protein of unknown function (DUF2768) CLD04_12030 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CLD04_12030 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CLD04_12035 PF01926 50S ribosome-binding GTPase CLD04_12035 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CLD04_12045 PF14045 YIEGIA protein CLD04_12055 PF14140 YpzI-like protein CLD04_12065 PF01070 FMN-dependent dehydrogenase CLD04_12070 PF00575 S1 RNA binding domain CLD04_12075 PF02224 Cytidylate kinase CLD04_12080 PF17313 Family of unknown function (DUF5359) CLD04_12085 PF12945 Flagellar protein YcgR CLD04_12085 PF07238 PilZ domain CLD04_12090 PF03413 Peptidase propeptide and YPEB domain CLD04_12090 PF14620 YpeB sporulation CLD04_12095 PF07486 Cell Wall Hydrolase CLD04_12095 PF01471 Putative peptidoglycan binding domain CLD04_12100 PF13367 PrsW family intramembrane metalloprotease CLD04_12110 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CLD04_12110 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CLD04_12115 PF05389 Negative regulator of genetic competence (MecA) CLD04_12120 PF00149 Calcineurin-like phosphoesterase CLD04_12125 PF10864 Protein of unknown function (DUF2663) CLD04_12130 PF01476 LysM domain CLD04_12135 PF02517 CPBP intramembrane metalloprotease CLD04_12140 PF00270 DEAD/DEAH box helicase CLD04_12140 PF00271 Helicase conserved C-terminal domain CLD04_12145 PF14493 Helix-turn-helix domain CLD04_12155 PF12822 ECF transporter, substrate-specific component CLD04_12160 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLD04_12160 PF01842 ACT domain CLD04_12160 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLD04_12165 PF01487 Type I 3-dehydroquinase CLD04_12175 PF04542 Sigma-70 region 2 CLD04_12175 PF08281 Sigma-70, region 4 CLD04_12180 PF00989 PAS fold CLD04_12180 PF00672 HAMP domain CLD04_12180 PF18698 Histidine kinase sensor domain CLD04_12180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLD04_12180 PF00512 His Kinase A (phospho-acceptor) domain CLD04_12185 PF00486 Transcriptional regulatory protein, C terminal CLD04_12185 PF00072 Response regulator receiver domain CLD04_12190 PF01578 Cytochrome C assembly protein CLD04_12195 PF05140 ResB-like family CLD04_12200 PF00578 AhpC/TSA family CLD04_12205 PF01479 S4 domain CLD04_12205 PF00849 RNA pseudouridylate synthase CLD04_12210 PF07670 Nucleoside recognition CLD04_12215 PF07670 Nucleoside recognition CLD04_12220 PF00768 D-alanyl-D-alanine carboxypeptidase CLD04_12220 PF07943 Penicillin-binding protein 5, C-terminal domain CLD04_12225 PF13047 Protein of unknown function (DUF3907) CLD04_12230 PF04079 Segregation and condensation complex subunit ScpB CLD04_12235 PF02616 Segregation and condensation protein ScpA CLD04_12240 PF03745 Domain of unknown function (DUF309) CLD04_12245 PF00583 Acetyltransferase (GNAT) family CLD04_12250 PF00885 6,7-dimethyl-8-ribityllumazine synthase CLD04_12255 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CLD04_12255 PF00925 GTP cyclohydrolase II CLD04_12260 PF00677 Lumazine binding domain CLD04_12265 PF01872 RibD C-terminal domain CLD04_12265 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CLD04_12275 PF10502 Signal peptidase, peptidase S26 CLD04_12285 PF09855 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) CLD04_12290 PF10676 Spore germination protein gerPA/gerPF CLD04_12295 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CLD04_12305 PF06207 Protein of unknown function (DUF1002) CLD04_12310 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CLD04_12310 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CLD04_12315 PF03323 Bacillus/Clostridium GerA spore germination protein CLD04_12320 PF14097 Stage V sporulation protein AE1 CLD04_12325 PF03862 SpoVAC/SpoVAEB sporulation membrane protein CLD04_12330 PF07451 Stage V sporulation protein AD (SpoVAD) CLD04_12335 PF03862 SpoVAC/SpoVAEB sporulation membrane protein CLD04_12340 PF13782 Stage V sporulation protein AB CLD04_12345 PF12164 Stage V sporulation protein AA CLD04_12350 PF04542 Sigma-70 region 2 CLD04_12350 PF04539 Sigma-70 region 3 CLD04_12350 PF04545 Sigma-70, region 4 CLD04_12355 PF13581 Histidine kinase-like ATPase domain CLD04_12360 PF01740 STAS domain CLD04_12365 PF07943 Penicillin-binding protein 5, C-terminal domain CLD04_12365 PF00768 D-alanyl-D-alanine carboxypeptidase CLD04_12370 PF01048 Phosphorylase superfamily CLD04_12375 PF01676 Metalloenzyme superfamily CLD04_12380 PF00589 Phage integrase family CLD04_12380 PF02899 Phage integrase, N-terminal SAM-like domain CLD04_12385 PF14004 Protein of unknown function (DUF4227) CLD04_12390 PF01475 Ferric uptake regulator family CLD04_12395 PF01944 Stage II sporulation protein M CLD04_12405 PF00390 Malic enzyme, N-terminal domain CLD04_12405 PF03949 Malic enzyme, NAD binding domain CLD04_12405 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLD04_12410 PF03553 Na+/H+ antiporter family CLD04_12415 PF00206 Lyase CLD04_12415 PF10415 Fumarase C C-terminus CLD04_12420 PF17763 Glutaminase/Asparaginase C-terminal domain CLD04_12420 PF00710 Asparaginase, N-terminal CLD04_12425 PF01381 Helix-turn-helix CLD04_12435 PF00293 NUDIX domain CLD04_12440 PF13072 Mother cell inhibitor of FtsZ CLD04_12445 PF00248 Aldo/keto reductase family CLD04_12450 PF13025 Protein of unknown function (DUF3886) CLD04_12455 PF12146 Serine aminopeptidase, S33 CLD04_12460 PF10827 Protein of unknown function (DUF2552) CLD04_12465 PF01521 Iron-sulphur cluster biosynthesis CLD04_12475 PF03992 Antibiotic biosynthesis monooxygenase CLD04_12480 PF00583 Acetyltransferase (GNAT) family CLD04_12485 PF08863 YolD-like protein CLD04_12490 PF11799 impB/mucB/samB family C-terminal domain CLD04_12490 PF00817 impB/mucB/samB family CLD04_12495 PF14164 YqzH-like protein CLD04_12500 PF07690 Major Facilitator Superfamily CLD04_12515 PF00485 Phosphoribulokinase / Uridine kinase family CLD04_12520 PF00291 Pyridoxal-phosphate dependent enzyme CLD04_12525 PF00106 short chain dehydrogenase CLD04_12530 PF00753 Metallo-beta-lactamase superfamily CLD04_12535 PF03807 NADP oxidoreductase coenzyme F420-dependent CLD04_12535 PF14748 Pyrroline-5-carboxylate reductase dimerisation CLD04_12540 PF01546 Peptidase family M20/M25/M40 CLD04_12545 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CLD04_12550 PF12146 Serine aminopeptidase, S33 CLD04_12555 PF00471 Ribosomal protein L33 CLD04_12560 PF12706 Beta-lactamase superfamily domain CLD04_12565 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CLD04_12565 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CLD04_12570 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CLD04_12570 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CLD04_12575 PF11798 IMS family HHH motif CLD04_12575 PF00817 impB/mucB/samB family CLD04_12575 PF11799 impB/mucB/samB family C-terminal domain CLD04_12585 PF02096 60Kd inner membrane protein CLD04_12590 PF09844 Uncharacterized conserved protein (COG2071) CLD04_12595 PF07687 Peptidase dimerisation domain CLD04_12595 PF01546 Peptidase family M20/M25/M40 CLD04_12610 PF03734 L,D-transpeptidase catalytic domain CLD04_12615 PF11728 Putative aromatic acid exporter C-terminal domain CLD04_12615 PF06081 Aromatic acid exporter family member 1 CLD04_12620 PF00005 ABC transporter CLD04_12625 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_12630 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLD04_12635 PF06491 Disulphide isomerase CLD04_12640 PF00781 Diacylglycerol kinase catalytic domain CLD04_12645 PF07690 Major Facilitator Superfamily CLD04_12650 PF06445 GyrI-like small molecule binding domain CLD04_12650 PF13411 MerR HTH family regulatory protein CLD04_12655 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CLD04_12655 PF02817 e3 binding domain CLD04_12655 PF00364 Biotin-requiring enzyme CLD04_12660 PF02780 Transketolase, C-terminal domain CLD04_12660 PF02779 Transketolase, pyrimidine binding domain CLD04_12665 PF00676 Dehydrogenase E1 component CLD04_12670 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLD04_12670 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CLD04_12675 PF00871 Acetokinase family CLD04_12680 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CLD04_12680 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CLD04_12685 PF01515 Phosphate acetyl/butaryl transferase CLD04_12690 PF02954 Bacterial regulatory protein, Fis family CLD04_12690 PF00989 PAS fold CLD04_12690 PF00158 Sigma-54 interaction domain CLD04_12695 PF11118 Protein of unknown function (DUF2627) CLD04_12705 PF03972 MmgE/PrpD family CLD04_12710 PF00285 Citrate synthase, C-terminal domain CLD04_12715 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLD04_12715 PF02770 Acyl-CoA dehydrogenase, middle domain CLD04_12715 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLD04_12720 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CLD04_12720 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CLD04_12725 PF02803 Thiolase, C-terminal domain CLD04_12725 PF00108 Thiolase, N-terminal domain CLD04_12730 PF03009 Glycerophosphoryl diester phosphodiesterase family CLD04_12735 PF01520 N-acetylmuramoyl-L-alanine amidase CLD04_12745 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CLD04_12750 PF08769 Sporulation initiation factor Spo0A C terminal CLD04_12750 PF00072 Response regulator receiver domain CLD04_12755 PF05580 SpoIVB peptidase S55 CLD04_12755 PF17820 PDZ domain CLD04_12760 PF13476 AAA domain CLD04_12765 PF02863 Arginine repressor, C-terminal domain CLD04_12765 PF01316 Arginine repressor, DNA binding domain CLD04_12770 PF01479 S4 domain CLD04_12770 PF01728 FtsJ-like methyltransferase CLD04_12775 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CLD04_12775 PF02780 Transketolase, C-terminal domain CLD04_12775 PF02779 Transketolase, pyrimidine binding domain CLD04_12780 PF00348 Polyprenyl synthetase CLD04_12785 PF02609 Exonuclease VII small subunit CLD04_12790 PF02601 Exonuclease VII, large subunit CLD04_12790 PF13742 OB-fold nucleic acid binding domain CLD04_12795 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CLD04_12795 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CLD04_12800 PF01029 NusB family CLD04_12805 PF03780 Asp23 family, cell envelope-related function CLD04_12810 PF00289 Biotin carboxylase, N-terminal domain CLD04_12810 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CLD04_12810 PF02785 Biotin carboxylase C-terminal domain CLD04_12815 PF00364 Biotin-requiring enzyme CLD04_12820 PF12685 SpoIIIAH-like protein CLD04_12830 PF09581 Stage III sporulation protein AF (Spore_III_AF) CLD04_12835 PF09546 Stage III sporulation protein AE (spore_III_AE) CLD04_12840 PF06686 Stage III sporulation protein AC/AD protein family CLD04_12845 PF06686 Stage III sporulation protein AC/AD protein family CLD04_12850 PF09548 Stage III sporulation protein AB (spore_III_AB) CLD04_12860 PF10942 Protein of unknown function (DUF2619) CLD04_12865 PF08207 Elongation factor P (EF-P) KOW-like domain CLD04_12865 PF09285 Elongation factor P, C-terminal CLD04_12865 PF01132 Elongation factor P (EF-P) OB domain CLD04_12870 PF01321 Creatinase/Prolidase N-terminal domain CLD04_12870 PF00557 Metallopeptidase family M24 CLD04_12875 PF01220 Dehydroquinase class II CLD04_12880 PF11085 Conserved membrane protein YqhR CLD04_12885 PF07136 Protein of unknown function (DUF1385) CLD04_12895 PF01734 Patatin-like phospholipase CLD04_12900 PF02742 Iron dependent repressor, metal binding and dimerisation domain CLD04_12900 PF01325 Iron dependent repressor, N-terminal DNA binding domain CLD04_12905 PF03099 Biotin/lipoate A/B protein ligase family CLD04_12910 PF00581 Rhodanese-like domain CLD04_12915 PF02347 Glycine cleavage system P-protein CLD04_12920 PF02347 Glycine cleavage system P-protein CLD04_12925 PF01571 Aminomethyltransferase folate-binding domain CLD04_12925 PF08669 Glycine cleavage T-protein C-terminal barrel domain CLD04_12930 PF00176 SNF2 family N-terminal domain CLD04_12930 PF00271 Helicase conserved C-terminal domain CLD04_12935 PF11079 Bacterial protein YqhG of unknown function CLD04_12940 PF08671 Anti-repressor SinI CLD04_12945 PF08671 Anti-repressor SinI CLD04_12945 PF01381 Helix-turn-helix CLD04_12950 PF12389 Camelysin metallo-endopeptidase CLD04_12965 PF13028 Protein of unknown function (DUF3889) CLD04_12970 PF14038 YqzE-like protein CLD04_12975 PF14173 ComG operon protein 7 CLD04_12980 PF15980 Putative Competence protein ComGF CLD04_12990 PF07963 Prokaryotic N-terminal methylation motif CLD04_12995 PF07963 Prokaryotic N-terminal methylation motif CLD04_13000 PF00482 Type II secretion system (T2SS), protein F CLD04_13005 PF00437 Type II/IV secretion system protein CLD04_13015 PF01544 CorA-like Mg2+ transporter protein CLD04_13020 PF01595 Cyclin M transmembrane N-terminal domain CLD04_13020 PF00571 CBS domain CLD04_13020 PF03471 Transporter associated domain CLD04_13025 PF01740 STAS domain CLD04_13025 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain CLD04_13035 PF03960 ArsC family CLD04_13040 PF11117 Protein of unknown function (DUF2626) CLD04_13045 PF00753 Metallo-beta-lactamase superfamily CLD04_13050 PF10958 Protein of unknown function (DUF2759) CLD04_13055 PF01910 Thiamine-binding protein CLD04_13065 PF00246 Zinc carboxypeptidase CLD04_13070 PF00884 Sulfatase CLD04_13075 PF00480 ROK family CLD04_13080 PF06014 Bacterial protein of unknown function (DUF910) CLD04_13085 PF01694 Rhomboid family CLD04_13095 PF01812 5-formyltetrahydrofolate cyclo-ligase family CLD04_13100 PF00471 Ribosomal protein L33 CLD04_13105 PF00534 Glycosyl transferases group 1 CLD04_13105 PF13439 Glycosyltransferase Family 4 CLD04_13125 PF00005 ABC transporter CLD04_13130 PF00005 ABC transporter CLD04_13135 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_13140 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_13145 PF12849 PBP superfamily domain CLD04_13155 PF07690 Major Facilitator Superfamily CLD04_13160 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CLD04_13160 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CLD04_13165 PF04306 Protein of unknown function (DUF456) CLD04_13170 PF06691 Protein of unknown function (DUF1189) CLD04_13180 PF04551 GcpE protein CLD04_13195 PF01475 Ferric uptake regulator family CLD04_13200 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CLD04_13200 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CLD04_13205 PF11116 Protein of unknown function (DUF2624) CLD04_13210 PF01261 Xylose isomerase-like TIM barrel CLD04_13215 PF00270 DEAD/DEAH box helicase CLD04_13215 PF00271 Helicase conserved C-terminal domain CLD04_13220 PF14181 YqfQ-like protein CLD04_13225 PF02401 LytB protein CLD04_13235 PF01784 NIF3 (NGG1p interacting factor 3) CLD04_13240 PF04816 tRNA (adenine(22)-N(1))-methyltransferase CLD04_13245 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CLD04_13255 PF04545 Sigma-70, region 4 CLD04_13255 PF04542 Sigma-70 region 2 CLD04_13255 PF00140 Sigma-70 factor, region 1.2 CLD04_13255 PF03979 Sigma-70 factor, region 1.1 CLD04_13255 PF04539 Sigma-70 region 3 CLD04_13260 PF01807 CHC2 zinc finger CLD04_13260 PF08275 DNA primase catalytic core, N-terminal domain CLD04_13260 PF10410 DnaB-helicase binding domain of primase CLD04_13265 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CLD04_13270 PF03618 Kinase/pyrophosphorylase CLD04_13275 PF08279 HTH domain CLD04_13275 PF00571 CBS domain CLD04_13280 PF02092 Glycyl-tRNA synthetase beta subunit CLD04_13285 PF02091 Glycyl-tRNA synthetase alpha subunit CLD04_13290 PF02565 Recombination protein O C terminal CLD04_13290 PF11967 Recombination protein O N terminal CLD04_13295 PF14006 YqzL-like protein CLD04_13300 PF01926 50S ribosome-binding GTPase CLD04_13300 PF07650 KH domain CLD04_13305 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CLD04_13310 PF01219 Prokaryotic diacylglycerol kinase CLD04_13315 PF02130 Uncharacterized protein family UPF0054 CLD04_13320 PF07697 7TM-HD extracellular CLD04_13320 PF01966 HD domain CLD04_13320 PF07698 7TM receptor with intracellular HD hydrolase CLD04_13325 PF02562 PhoH-like protein CLD04_13330 PF06898 Putative stage IV sporulation protein YqfD CLD04_13335 PF07873 YabP family CLD04_13345 PF12127 SigmaW regulon antibacterial CLD04_13350 PF01957 NfeD-like C-terminal, partner-binding CLD04_13350 PF01972 Serine dehydrogenase proteinase CLD04_13355 PF09424 Yqey-like protein CLD04_13360 PF01165 Ribosomal protein S21 CLD04_13365 PF02690 Na+/Pi-cotransporter CLD04_13370 PF04055 Radical SAM superfamily CLD04_13370 PF01938 TRAM domain CLD04_13370 PF00919 Uncharacterized protein family UPF0004 CLD04_13375 PF04452 RNA methyltransferase CLD04_13385 PF00684 DnaJ central domain CLD04_13385 PF00226 DnaJ domain CLD04_13385 PF01556 DnaJ C terminal domain CLD04_13390 PF00012 Hsp70 protein CLD04_13395 PF01025 GrpE CLD04_13400 PF01628 HrcA protein C terminal domain CLD04_13405 PF04055 Radical SAM superfamily CLD04_13405 PF06969 HemN C-terminal domain CLD04_13410 PF06421 GTP-binding protein LepA C-terminus CLD04_13410 PF03144 Elongation factor Tu domain 2 CLD04_13410 PF00679 Elongation factor G C-terminus CLD04_13410 PF00009 Elongation factor Tu GTP binding domain CLD04_13415 PF12438 Protein of unknown function (DUF3679) CLD04_13420 PF07454 Stage II sporulation protein P (SpoIIP) CLD04_13425 PF03418 Germination protease CLD04_13430 PF01649 Ribosomal protein S20 CLD04_13435 PF06144 DNA polymerase III, delta subunit CLD04_13440 PF14141 YqzM-like protein CLD04_13445 PF00753 Metallo-beta-lactamase superfamily CLD04_13445 PF13567 Domain of unknown function (DUF4131) CLD04_13445 PF03772 Competence protein CLD04_13450 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CLD04_13455 PF10531 SLBB domain CLD04_13460 PF14748 Pyrroline-5-carboxylate reductase dimerisation CLD04_13460 PF03807 NADP oxidoreductase coenzyme F420-dependent CLD04_13465 PF13649 Methyltransferase domain CLD04_13475 PF01966 HD domain CLD04_13480 PF01467 Cytidylyltransferase-like CLD04_13485 PF01985 CRS1 / YhbY (CRM) domain CLD04_13490 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CLD04_13490 PF08501 Shikimate dehydrogenase substrate binding domain CLD04_13490 PF01488 Shikimate / quinate 5-dehydrogenase CLD04_13495 PF01926 50S ribosome-binding GTPase CLD04_13505 PF08970 Sporulation inhibitor A CLD04_13510 PF00657 GDSL-like Lipase/Acylhydrolase CLD04_13520 PF09335 SNARE associated Golgi protein CLD04_13525 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CLD04_13525 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CLD04_13535 PF14040 Deoxyribonuclease NucA/NucB CLD04_13540 PF04542 Sigma-70 region 2 CLD04_13540 PF04545 Sigma-70, region 4 CLD04_13545 PF00440 Bacterial regulatory proteins, tetR family CLD04_13545 PF02909 Tetracyclin repressor-like, C-terminal domain CLD04_13555 PF02156 Glycosyl hydrolase family 26 CLD04_13560 PF01925 Sulfite exporter TauE/SafE CLD04_13565 PF01206 Sulfurtransferase TusA CLD04_13580 PF01206 Sulfurtransferase TusA CLD04_13580 PF00581 Rhodanese-like domain CLD04_13590 PF13686 DsrE/DsrF/DrsH-like family CLD04_13595 PF02583 Metal-sensitive transcriptional repressor CLD04_13610 PF07883 Cupin domain CLD04_13625 PF13411 MerR HTH family regulatory protein CLD04_13625 PF06445 GyrI-like small molecule binding domain CLD04_13630 PF07690 Major Facilitator Superfamily CLD04_13635 PF00583 Acetyltransferase (GNAT) family CLD04_13640 PF01595 Cyclin M transmembrane N-terminal domain CLD04_13640 PF03471 Transporter associated domain CLD04_13640 PF00571 CBS domain CLD04_13645 PF14142 YrzO-like protein CLD04_13650 PF00892 EamA-like transporter family CLD04_13655 PF03466 LysR substrate binding domain CLD04_13655 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLD04_13665 PF16916 Dimerisation domain of Zinc Transporter CLD04_13665 PF01545 Cation efflux family CLD04_13670 PF14552 Tautomerase enzyme CLD04_13675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLD04_13675 PF03466 LysR substrate binding domain CLD04_13690 PF05437 Branched-chain amino acid transport protein (AzlD) CLD04_13695 PF03591 AzlC protein CLD04_13700 PF01037 Lrp/AsnC ligand binding domain CLD04_13705 PF01337 Barstar (barnase inhibitor) CLD04_13710 PF00067 Cytochrome P450 CLD04_13720 PF00857 Isochorismatase family CLD04_13725 PF10823 Protein of unknown function (DUF2568) CLD04_13735 PF05163 DinB family CLD04_13740 PF04439 Streptomycin adenylyltransferase CLD04_13745 PF03060 Nitronate monooxygenase CLD04_13760 PF01177 Asp/Glu/Hydantoin racemase CLD04_13765 PF15493 Domain of unknown function, YrpD CLD04_13770 PF09680 Family of unknown function CLD04_13775 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment CLD04_13780 PF08281 Sigma-70, region 4 CLD04_13780 PF04542 Sigma-70 region 2 CLD04_13785 PF00248 Aldo/keto reductase family CLD04_13790 PF03600 Citrate transporter CLD04_13795 PF03466 LysR substrate binding domain CLD04_13795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLD04_13800 PF04303 PrpF protein CLD04_13815 PF00561 alpha/beta hydrolase fold CLD04_13830 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLD04_13840 PF07875 Coat F domain CLD04_13845 PF08240 Alcohol dehydrogenase GroES-like domain CLD04_13845 PF13823 Alcohol dehydrogenase GroES-associated CLD04_13845 PF00107 Zinc-binding dehydrogenase CLD04_13855 PF07875 Coat F domain CLD04_13860 PF13411 MerR HTH family regulatory protein CLD04_13865 PF08240 Alcohol dehydrogenase GroES-like domain CLD04_13865 PF00107 Zinc-binding dehydrogenase CLD04_13870 PF01965 DJ-1/PfpI family CLD04_13875 PF08244 Glycosyl hydrolases family 32 C terminal CLD04_13875 PF00251 Glycosyl hydrolases family 32 N-terminal domain CLD04_13880 PF03613 PTS system mannose/fructose/sorbose family IID component CLD04_13885 PF03609 PTS system sorbose-specific iic component CLD04_13890 PF03830 PTS system sorbose subfamily IIB component CLD04_13895 PF03610 PTS system fructose IIA component CLD04_13900 PF03610 PTS system fructose IIA component CLD04_13900 PF00874 PRD domain CLD04_13900 PF00158 Sigma-54 interaction domain CLD04_13905 PF00324 Amino acid permease CLD04_13910 PF01810 LysE type translocator CLD04_13915 PF01978 Sugar-specific transcriptional regulator TrmB CLD04_13915 PF11495 Archaeal transcriptional regulator TrmB CLD04_13920 PF04542 Sigma-70 region 2 CLD04_13920 PF08281 Sigma-70, region 4 CLD04_13925 PF13739 Deacetylase PdaC CLD04_13925 PF11738 Protein of unknown function (DUF3298) CLD04_13930 PF01757 Acyltransferase family CLD04_13935 PF14145 YrhK-like protein CLD04_13940 PF00175 Oxidoreductase NAD-binding domain CLD04_13940 PF00258 Flavodoxin CLD04_13940 PF00667 FAD binding domain CLD04_13940 PF00067 Cytochrome P450 CLD04_13945 PF00440 Bacterial regulatory proteins, tetR family CLD04_13945 PF16295 Tetracyclin repressor-like, C-terminal domain CLD04_13950 PF08241 Methyltransferase domain CLD04_13955 PF09501 Probable sporulation protein (Bac_small_yrzI) CLD04_13960 PF01226 Formate/nitrite transporter CLD04_13965 PF10057 Uncharacterized conserved protein (DUF2294) CLD04_13970 PF00037 4Fe-4S binding domain CLD04_13970 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CLD04_13970 PF01568 Molydopterin dinucleotide binding domain CLD04_13970 PF00384 Molybdopterin oxidoreductase CLD04_13970 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CLD04_13975 PF07849 Protein of unknown function (DUF1641) CLD04_13980 PF14143 YrhC-like protein CLD04_13985 PF01053 Cys/Met metabolism PLP-dependent enzyme CLD04_13990 PF00291 Pyridoxal-phosphate dependent enzyme CLD04_13995 PF01048 Phosphorylase superfamily CLD04_14000 PF13649 Methyltransferase domain CLD04_14005 PF10750 Protein of unknown function (DUF2536) CLD04_14010 PF07423 Domain of unknown function (DUF1510) CLD04_14015 PF00905 Penicillin binding protein transpeptidase domain CLD04_14015 PF03717 Penicillin-binding Protein dimerisation domain CLD04_14020 PF01272 Transcription elongation factor, GreA/GreB, C-term CLD04_14020 PF03449 Transcription elongation factor, N-terminal CLD04_14025 PF00485 Phosphoribulokinase / Uridine kinase family CLD04_14045 PF02618 YceG-like family CLD04_14050 PF06949 Protein of unknown function (DUF1292) CLD04_14055 PF03652 Holliday junction resolvase CLD04_14060 PF06135 IreB regulatory phosphoprotein CLD04_14065 PF02272 DHHA1 domain CLD04_14065 PF01411 tRNA synthetases class II (A) CLD04_14065 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CLD04_14070 PF01594 AI-2E family transporter CLD04_14075 PF00005 ABC transporter CLD04_14080 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLD04_14085 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_14090 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_14095 PF13056 Protein of unknown function (DUF3918) CLD04_14105 PF05239 PRC-barrel domain CLD04_14110 PF14490 Helix-hairpin-helix containing domain CLD04_14110 PF13538 UvrD-like helicase C-terminal domain CLD04_14110 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain CLD04_14115 PF07719 Tetratricopeptide repeat CLD04_14115 PF13181 Tetratricopeptide repeat CLD04_14125 PF00266 Aminotransferase class-V CLD04_14130 PF02082 Transcriptional regulator CLD04_14135 PF16193 AAA C-terminal domain CLD04_14135 PF12002 MgsA AAA+ ATPase C terminal CLD04_14135 PF05496 Holliday junction DNA helicase RuvB P-loop domain CLD04_14140 PF00899 ThiF family CLD04_14150 PF02938 GAD domain CLD04_14150 PF00152 tRNA synthetases class II (D, K and N) CLD04_14150 PF01336 OB-fold nucleic acid binding domain CLD04_14155 PF03129 Anticodon binding domain CLD04_14155 PF13393 Histidyl-tRNA synthetase CLD04_14160 PF17449 Uncharacterized YrzK-like CLD04_14165 PF08239 Bacterial SH3 domain CLD04_14165 PF01520 N-acetylmuramoyl-L-alanine amidase CLD04_14170 PF02580 D-Tyr-tRNA(Tyr) deacylase CLD04_14175 PF13291 ACT domain CLD04_14175 PF04607 Region found in RelA / SpoT proteins CLD04_14175 PF02824 TGS domain CLD04_14180 PF00156 Phosphoribosyl transferase domain CLD04_14185 PF01368 DHH family CLD04_14185 PF02272 DHHA1 domain CLD04_14185 PF10141 Single-strand DNA-specific exonuclease, C terminal domain CLD04_14185 PF17768 RecJ OB domain CLD04_14190 PF06305 Lipopolysaccharide assembly protein A domain CLD04_14195 PF02080 TrkA-C domain CLD04_14200 PF02355 Protein export membrane protein CLD04_14200 PF07549 SecD/SecF GG Motif CLD04_14205 PF13797 Post-transcriptional regulator CLD04_14210 PF14667 Polysaccharide biosynthesis C-terminal domain CLD04_14210 PF01943 Polysaccharide biosynthesis protein CLD04_14215 PF04239 Protein of unknown function (DUF421) CLD04_14220 PF12670 Protein of unknown function (DUF3792) CLD04_14230 PF02699 Preprotein translocase subunit CLD04_14235 PF01702 Queuine tRNA-ribosyltransferase CLD04_14240 PF02547 Queuosine biosynthesis protein CLD04_14245 PF11146 Protein of unknown function (DUF2905) CLD04_14250 PF17864 RuvB AAA lid domain CLD04_14250 PF05491 RuvB C-terminal winged helix domain CLD04_14250 PF05496 Holliday junction DNA helicase RuvB P-loop domain CLD04_14255 PF07499 RuvA, C-terminal domain CLD04_14255 PF01330 RuvA N terminal domain CLD04_14260 PF08955 BofC C-terminal domain CLD04_14260 PF08977 Bypass of Forespore C, N terminal CLD04_14265 PF07690 Major Facilitator Superfamily CLD04_14270 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CLD04_14270 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CLD04_14290 PF01235 Sodium:alanine symporter family CLD04_14295 PF01709 Transcriptional regulator CLD04_14300 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) CLD04_14305 PF01476 LysM domain CLD04_14310 PF02445 Quinolinate synthetase A protein CLD04_14315 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CLD04_14315 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CLD04_14320 PF02910 Fumarate reductase flavoprotein C-term CLD04_14320 PF00890 FAD binding domain CLD04_14325 PF00266 Aminotransferase class-V CLD04_14330 PF02829 3H domain CLD04_14330 PF08279 HTH domain CLD04_14335 PF00800 Prephenate dehydratase CLD04_14335 PF01842 ACT domain CLD04_14340 PF01842 ACT domain CLD04_14345 PF09269 Domain of unknown function (DUF1967) CLD04_14345 PF01018 GTP1/OBG CLD04_14345 PF01926 50S ribosome-binding GTPase CLD04_14350 PF14682 Sporulation initiation phospho-transferase B, C-terminal CLD04_14350 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CLD04_14355 PF01016 Ribosomal L27 protein CLD04_14360 PF04327 Cysteine protease Prp CLD04_14365 PF00829 Ribosomal prokaryotic L21 protein CLD04_14370 PF02163 Peptidase family M50 CLD04_14375 PF01551 Peptidase family M23 CLD04_14380 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CLD04_14385 PF03775 Septum formation inhibitor MinC, C-terminal domain CLD04_14390 PF04093 rod shape-determining protein MreD CLD04_14395 PF04085 rod shape-determining protein MreC CLD04_14405 PF04002 RadC-like JAB domain CLD04_14405 PF00633 Helix-hairpin-helix motif CLD04_14410 PF02545 Maf-like protein CLD04_14415 PF05036 Sporulation related domain CLD04_14420 PF06750 Bacterial Peptidase A24 N-terminal domain CLD04_14420 PF01478 Type IV leader peptidase family CLD04_14425 PF08245 Mur ligase middle domain CLD04_14425 PF02875 Mur ligase family, glutamate ligase domain CLD04_14430 PF08264 Anticodon-binding domain of tRNA CLD04_14430 PF10458 Valyl tRNA synthetase tRNA binding arm CLD04_14430 PF00133 tRNA synthetases class I (I, L, M and V) CLD04_14445 PF01476 LysM domain CLD04_14450 PF00202 Aminotransferase class-III CLD04_14455 PF00490 Delta-aminolevulinic acid dehydratase CLD04_14460 PF02602 Uroporphyrinogen-III synthase HemD CLD04_14465 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CLD04_14465 PF03900 Porphobilinogen deaminase, C-terminal domain CLD04_14470 PF01578 Cytochrome C assembly protein CLD04_14475 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CLD04_14475 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CLD04_14475 PF01488 Shikimate / quinate 5-dehydrogenase CLD04_14485 PF01926 50S ribosome-binding GTPase CLD04_14490 PF00004 ATPase family associated with various cellular activities (AAA) CLD04_14490 PF05362 Lon protease (S16) C-terminal proteolytic domain CLD04_14490 PF02190 ATP-dependent protease La (LON) substrate-binding domain CLD04_14495 PF00004 ATPase family associated with various cellular activities (AAA) CLD04_14495 PF05362 Lon protease (S16) C-terminal proteolytic domain CLD04_14500 PF07724 AAA domain (Cdc48 subfamily) CLD04_14500 PF10431 C-terminal, D2-small domain, of ClpB protein CLD04_14500 PF06689 ClpX C4-type zinc finger CLD04_14505 PF05698 Bacterial trigger factor protein (TF) C-terminus CLD04_14505 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CLD04_14505 PF05697 Bacterial trigger factor protein (TF) CLD04_14515 PF00694 Aconitase C-terminal domain CLD04_14520 PF00330 Aconitase family (aconitate hydratase) CLD04_14525 PF00180 Isocitrate/isopropylmalate dehydrogenase CLD04_14530 PF00682 HMGL-like CLD04_14530 PF08502 LeuA allosteric (dimerisation) domain CLD04_14535 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CLD04_14535 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CLD04_14540 PF01842 ACT domain CLD04_14540 PF10369 Small subunit of acetolactate synthase CLD04_14545 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLD04_14545 PF00205 Thiamine pyrophosphate enzyme, central domain CLD04_14545 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CLD04_14560 PF00583 Acetyltransferase (GNAT) family CLD04_14565 PF09557 Domain of unknown function (DUF2382) CLD04_14565 PF11181 Heat induced stress protein YflT CLD04_14575 PF12850 Calcineurin-like phosphoesterase superfamily domain CLD04_14580 PF01725 Ham1 family CLD04_14585 PF03725 3' exoribonuclease family, domain 2 CLD04_14585 PF01138 3' exoribonuclease family, domain 1 CLD04_14590 PF10646 Sporulation and spore germination CLD04_14595 PF01177 Asp/Glu/Hydantoin racemase CLD04_14600 PF01047 MarR family CLD04_14605 PF00196 Bacterial regulatory proteins, luxR family CLD04_14610 PF03061 Thioesterase superfamily CLD04_14620 PF13085 2Fe-2S iron-sulfur cluster binding domain CLD04_14620 PF13183 4Fe-4S dicluster domain CLD04_14625 PF00890 FAD binding domain CLD04_14625 PF02910 Fumarate reductase flavoprotein C-term CLD04_14630 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CLD04_14635 PF10702 Protein of unknown function (DUF2507) CLD04_14640 PF13840 ACT domain CLD04_14640 PF00696 Amino acid kinase family CLD04_14640 PF01842 ACT domain CLD04_14650 PF08459 UvrC Helix-hairpin-helix N-terminal CLD04_14650 PF01541 GIY-YIG catalytic domain CLD04_14650 PF02151 UvrB/uvrC motif CLD04_14655 PF00085 Thioredoxin CLD04_14660 PF06964 Alpha-L-arabinofuranosidase C-terminal domain CLD04_14665 PF01012 Electron transfer flavoprotein domain CLD04_14665 PF00766 Electron transfer flavoprotein FAD-binding domain CLD04_14670 PF01012 Electron transfer flavoprotein domain CLD04_14675 PF00378 Enoyl-CoA hydratase/isomerase CLD04_14680 PF00440 Bacterial regulatory proteins, tetR family CLD04_14680 PF08359 YsiA-like protein, C-terminal region CLD04_14685 PF00501 AMP-binding enzyme CLD04_14685 PF13193 AMP-binding enzyme C-terminal domain CLD04_14690 PF03994 Domain of Unknown Function (DUF350) CLD04_14695 PF00488 MutS domain V CLD04_14695 PF01713 Smr domain CLD04_14700 PF14791 DNA polymerase beta thumb CLD04_14700 PF14716 Helix-hairpin-helix domain CLD04_14700 PF02811 PHP domain CLD04_14705 PF02674 Colicin V production protein CLD04_14710 PF05164 Cell division protein ZapA CLD04_14715 PF11858 Domain of unknown function (DUF3378) CLD04_14715 PF01351 Ribonuclease HII CLD04_14720 PF03147 Ferredoxin-fold anticodon binding domain CLD04_14720 PF01588 Putative tRNA binding domain CLD04_14720 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CLD04_14720 PF03484 tRNA synthetase B5 domain CLD04_14720 PF03483 B3/4 domain CLD04_14725 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CLD04_14725 PF01409 tRNA synthetases class II core domain (F) CLD04_14735 PF00588 SpoU rRNA Methylase family CLD04_14735 PF08032 RNA 2'-O ribose methyltransferase substrate binding CLD04_14740 PF14098 Small, acid-soluble spore protein I CLD04_14745 PF17853 GGDEF-like domain CLD04_14745 PF05651 Putative sugar diacid recognition CLD04_14745 PF13556 PucR C-terminal helix-turn-helix domain CLD04_14750 PF01565 FAD binding domain CLD04_14750 PF02913 FAD linked oxidases, C-terminal domain CLD04_14755 PF13183 4Fe-4S dicluster domain CLD04_14755 PF02754 Cysteine-rich domain CLD04_14760 PF12681 Glyoxalase-like domain CLD04_14770 PF13722 5TM C-terminal transporter carbon starvation CstA CLD04_14770 PF02554 Carbon starvation protein CstA CLD04_14775 PF06964 Alpha-L-arabinofuranosidase C-terminal domain CLD04_14780 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_14785 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_14790 PF01547 Bacterial extracellular solute-binding protein CLD04_14795 PF13685 Iron-containing alcohol dehydrogenase CLD04_14800 PF13344 Haloacid dehalogenase-like hydrolase CLD04_14805 PF00596 Class II Aldolase and Adducin N-terminal domain CLD04_14810 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CLD04_14810 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CLD04_14815 PF02610 L-arabinose isomerase CLD04_14815 PF11762 L-arabinose isomerase C-terminal domain CLD04_14825 PF04616 Glycosyl hydrolases family 43 CLD04_14830 PF05343 M42 glutamyl aminopeptidase CLD04_14840 PF06961 Protein of unknown function (DUF1294) CLD04_14845 PF00453 Ribosomal protein L20 CLD04_14850 PF01632 Ribosomal protein L35 CLD04_14855 PF05198 Translation initiation factor IF-3, N-terminal domain CLD04_14855 PF00707 Translation initiation factor IF-3, C-terminal domain CLD04_14865 PF04172 LrgB-like family CLD04_14870 PF03788 LrgA family CLD04_14875 PF00072 Response regulator receiver domain CLD04_14875 PF04397 LytTr DNA-binding domain CLD04_14880 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLD04_14880 PF06580 Histidine kinase CLD04_14880 PF07694 5TMR of 5TMR-LYT CLD04_14890 PF03129 Anticodon binding domain CLD04_14890 PF02824 TGS domain CLD04_14890 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CLD04_14890 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLD04_14895 PF08812 YtxC-like family CLD04_14900 PF09335 SNARE associated Golgi protein CLD04_14905 PF01695 IstB-like ATP binding protein CLD04_14905 PF07319 Primosomal protein DnaI N-terminus CLD04_14910 PF07261 Replication initiation and membrane attachment CLD04_14915 PF03477 ATP cone domain CLD04_14920 PF02675 S-adenosylmethionine decarboxylase CLD04_14925 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CLD04_14925 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CLD04_14940 PF00248 Aldo/keto reductase family CLD04_14945 PF01121 Dephospho-CoA kinase CLD04_14950 PF02659 Putative manganese efflux pump CLD04_14955 PF06827 Zinc finger found in FPG and IleRS CLD04_14955 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CLD04_14955 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CLD04_14960 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CLD04_14960 PF01367 5'-3' exonuclease, C-terminal SAM fold CLD04_14960 PF00476 DNA polymerase family A CLD04_14965 PF00512 His Kinase A (phospho-acceptor) domain CLD04_14965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLD04_14965 PF16736 Single Cache-like CLD04_14965 PF00989 PAS fold CLD04_14970 PF00486 Transcriptional regulatory protein, C terminal CLD04_14970 PF00072 Response regulator receiver domain CLD04_14975 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CLD04_14975 PF00056 lactate/malate dehydrogenase, NAD binding domain CLD04_14980 PF00180 Isocitrate/isopropylmalate dehydrogenase CLD04_14985 PF00285 Citrate synthase, C-terminal domain CLD04_14990 PF04284 Protein of unknown function (DUF441) CLD04_14995 PF01594 AI-2E family transporter CLD04_15000 PF04186 FxsA cytoplasmic membrane protein CLD04_15005 PF02887 Pyruvate kinase, alpha/beta domain CLD04_15005 PF00224 Pyruvate kinase, barrel domain CLD04_15005 PF00391 PEP-utilising enzyme, mobile domain CLD04_15010 PF00365 Phosphofructokinase CLD04_15015 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CLD04_15020 PF17848 Acetyl-coA carboxylase zinc finger domain CLD04_15020 PF01039 Carboxyl transferase domain CLD04_15025 PF03949 Malic enzyme, NAD binding domain CLD04_15025 PF00390 Malic enzyme, N-terminal domain CLD04_15030 PF07733 Bacterial DNA polymerase III alpha NTPase domain CLD04_15030 PF02811 PHP domain CLD04_15030 PF01336 OB-fold nucleic acid binding domain CLD04_15030 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CLD04_15030 PF14579 Helix-hairpin-helix motif CLD04_15035 PF14034 Sporulation protein YtrH CLD04_15050 PF02272 DHHA1 domain CLD04_15050 PF01368 DHH family CLD04_15055 PF14007 YtpI-like protein CLD04_15060 PF00392 Bacterial regulatory proteins, gntR family CLD04_15060 PF07085 DRTGG domain CLD04_15060 PF03061 Thioesterase superfamily CLD04_15060 PF00571 CBS domain CLD04_15065 PF01925 Sulfite exporter TauE/SafE CLD04_15075 PF01687 Riboflavin kinase CLD04_15080 PF00296 Luciferase-like monooxygenase CLD04_15085 PF00462 Glutaredoxin CLD04_15090 PF00296 Luciferase-like monooxygenase CLD04_15095 PF00005 ABC transporter CLD04_15100 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_15105 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_15110 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLD04_15115 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLD04_15120 PF00583 Acetyltransferase (GNAT) family CLD04_15125 PF03466 LysR substrate binding domain CLD04_15125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLD04_15145 PF00206 Lyase CLD04_15145 PF14698 Argininosuccinate lyase C-terminal CLD04_15150 PF00764 Arginosuccinate synthase CLD04_15155 PF00994 Probable molybdopterin binding domain CLD04_15160 PF00871 Acetokinase family CLD04_15165 PF02384 N-6 DNA Methylase CLD04_15170 PF08534 Redoxin CLD04_15175 PF09579 Sporulation protein YtfJ (Spore_YtfJ) CLD04_15180 PF11167 Protein of unknown function (DUF2953) CLD04_15185 PF06271 RDD family CLD04_15190 PF01343 Peptidase family S49 CLD04_15195 PF01513 ATP-NAD kinase CLD04_15200 PF07969 Amidohydrolase family CLD04_15205 PF00501 AMP-binding enzyme CLD04_15205 PF13193 AMP-binding enzyme C-terminal domain CLD04_15210 PF00269 Small, acid-soluble spore proteins, alpha/beta type CLD04_15215 PF02926 THUMP domain CLD04_15215 PF02568 Thiamine biosynthesis protein (ThiI) CLD04_15220 PF00266 Aminotransferase class-V CLD04_15225 PF05525 Branched-chain amino acid transport protein CLD04_15230 PF06160 Septation ring formation regulator, EzrA CLD04_15235 PF02811 PHP domain CLD04_15240 PF00440 Bacterial regulatory proteins, tetR family CLD04_15245 PF13185 GAF domain CLD04_15250 PF00990 Diguanylate cyclase, GGDEF domain CLD04_15260 PF00163 Ribosomal protein S4/S9 N-terminal domain CLD04_15260 PF01479 S4 domain CLD04_15270 PF00579 tRNA synthetases class I (W and Y) CLD04_15270 PF01479 S4 domain CLD04_15280 PF13193 AMP-binding enzyme C-terminal domain CLD04_15280 PF00501 AMP-binding enzyme CLD04_15285 PF00583 Acetyltransferase (GNAT) family CLD04_15290 PF00571 CBS domain CLD04_15295 PF00850 Histone deacetylase domain CLD04_15300 PF00691 OmpA family CLD04_15300 PF13677 Membrane MotB of proton-channel complex MotA/MotB CLD04_15305 PF01618 MotA/TolQ/ExbB proton channel family CLD04_15310 PF00356 Bacterial regulatory proteins, lacI family CLD04_15315 PF00793 DAHP synthetase I family CLD04_15315 PF01817 Chorismate mutase type II CLD04_15320 PF11009 Protein of unknown function (DUF2847) CLD04_15325 PF12732 YtxH-like protein CLD04_15330 PF06103 Bacterial protein of unknown function (DUF948) CLD04_15335 PF02875 Mur ligase family, glutamate ligase domain CLD04_15335 PF08245 Mur ligase middle domain CLD04_15335 PF01225 Mur ligase family, catalytic domain CLD04_15340 PF09397 Ftsk gamma domain CLD04_15340 PF17854 FtsK alpha domain CLD04_15340 PF01580 FtsK/SpoIIIE family CLD04_15345 PF14794 Domain of unknown function (DUF4479) CLD04_15345 PF01588 Putative tRNA binding domain CLD04_15350 PF07285 Protein of unknown function (DUF1444) CLD04_15355 PF00085 Thioredoxin CLD04_15365 PF05343 M42 glutamyl aminopeptidase CLD04_15370 PF03413 Peptidase propeptide and YPEB domain CLD04_15375 PF00390 Malic enzyme, N-terminal domain CLD04_15375 PF03949 Malic enzyme, NAD binding domain CLD04_15380 PF00753 Metallo-beta-lactamase superfamily CLD04_15385 PF02390 Putative methyltransferase CLD04_15390 PF14165 YtzH-like protein CLD04_15395 PF01636 Phosphotransferase enzyme family CLD04_15400 PF00128 Alpha amylase, catalytic domain CLD04_15400 PF17999 Pullulanase N1-terminal domain CLD04_15400 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CLD04_15405 PF00781 Diacylglycerol kinase catalytic domain CLD04_15420 PF00291 Pyridoxal-phosphate dependent enzyme CLD04_15430 PF01546 Peptidase family M20/M25/M40 CLD04_15435 PF00860 Permease family CLD04_15440 PF05975 Bacterial ABC transporter protein EcsB CLD04_15445 PF00005 ABC transporter CLD04_15450 PF08220 DeoR-like helix-turn-helix domain CLD04_15455 PF01479 S4 domain CLD04_15455 PF00849 RNA pseudouridylate synthase CLD04_15460 PF14667 Polysaccharide biosynthesis C-terminal domain CLD04_15460 PF01943 Polysaccharide biosynthesis protein CLD04_15470 PF02028 BCCT, betaine/carnitine/choline family transporter CLD04_15475 PF10957 Sporulation protein Cse60 CLD04_15480 PF04854 Protein of unknown function, DUF624 CLD04_15485 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CLD04_15485 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CLD04_15495 PF07470 Glycosyl Hydrolase Family 88 CLD04_15500 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_15510 PF13416 Bacterial extracellular solute-binding protein CLD04_15515 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_15520 PF01370 NAD dependent epimerase/dehydratase family CLD04_15525 PF00067 Cytochrome P450 CLD04_15530 PF06968 Biotin and Thiamin Synthesis associated domain CLD04_15530 PF04055 Radical SAM superfamily CLD04_15540 PF00155 Aminotransferase class I and II CLD04_15545 PF00202 Aminotransferase class-III CLD04_15550 PF03744 6-carboxyhexanoate--CoA ligase CLD04_15555 PF01738 Dienelactone hydrolase family CLD04_15580 PF11975 Family 4 glycosyl hydrolase C-terminal domain CLD04_15580 PF02056 Family 4 glycosyl hydrolase CLD04_15585 PF00581 Rhodanese-like domain CLD04_15590 PF09334 tRNA synthetases class I (M) CLD04_15590 PF13603 Leucyl-tRNA synthetase, Domain 2 CLD04_15590 PF00133 tRNA synthetases class I (I, L, M and V) CLD04_15590 PF08264 Anticodon-binding domain of tRNA CLD04_15595 PF14074 Protein of unknown function (DUF4257) CLD04_15600 PF01740 STAS domain CLD04_15600 PF13426 PAS domain CLD04_15605 PF07690 Major Facilitator Superfamily CLD04_15610 PF04791 LMBR1-like membrane protein CLD04_15615 PF02687 FtsX-like permease family CLD04_15620 PF00005 ABC transporter CLD04_15625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLD04_15630 PF00486 Transcriptional regulatory protein, C terminal CLD04_15630 PF00072 Response regulator receiver domain CLD04_15635 PF02687 FtsX-like permease family CLD04_15635 PF12704 MacB-like periplasmic core domain CLD04_15640 PF00005 ABC transporter CLD04_15655 PF00005 ABC transporter CLD04_15660 PF00392 Bacterial regulatory proteins, gntR family CLD04_15665 PF10732 Protein of unknown function (DUF2524) CLD04_15670 PF04055 Radical SAM superfamily CLD04_15670 PF16199 Radical_SAM C-terminal domain CLD04_15675 PF06962 Putative rRNA methylase CLD04_15680 PF10776 Protein of unknown function (DUF2600) CLD04_15685 PF12146 Serine aminopeptidase, S33 CLD04_15690 PF00132 Bacterial transferase hexapeptide (six repeats) CLD04_15700 PF13537 Glutamine amidotransferase domain CLD04_15700 PF00733 Asparagine synthase CLD04_15705 PF02772 S-adenosylmethionine synthetase, central domain CLD04_15705 PF02773 S-adenosylmethionine synthetase, C-terminal domain CLD04_15705 PF00438 S-adenosylmethionine synthetase, N-terminal domain CLD04_15710 PF01293 Phosphoenolpyruvate carboxykinase CLD04_15715 PF10763 Protein of unknown function (DUF2584) CLD04_15730 PF00005 ABC transporter CLD04_15735 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_15740 PF00293 NUDIX domain CLD04_15745 PF05105 Bacteriophage holin family CLD04_15750 PF00210 Ferritin-like domain CLD04_15760 PF13115 YtkA-like CLD04_15765 PF02664 S-Ribosylhomocysteinase (LuxS) CLD04_15770 PF01809 Putative membrane protein insertion efficiency factor CLD04_15775 PF00484 Carbonic anhydrase CLD04_15780 PF01197 Ribosomal protein L31 CLD04_15785 PF01654 Cytochrome bd terminal oxidase subunit I CLD04_15790 PF02322 Cytochrome bd terminal oxidase subunit II CLD04_15795 PF07561 Domain of Unknown Function (DUF1540) CLD04_15800 PF00950 ABC 3 transport family CLD04_15805 PF00950 ABC 3 transport family CLD04_15810 PF00005 ABC transporter CLD04_15815 PF01297 Zinc-uptake complex component A periplasmic CLD04_15825 PF13378 Enolase C-terminal domain-like CLD04_15825 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CLD04_15830 PF13193 AMP-binding enzyme C-terminal domain CLD04_15830 PF00501 AMP-binding enzyme CLD04_15835 PF00378 Enoyl-CoA hydratase/isomerase CLD04_15840 PF00561 alpha/beta hydrolase fold CLD04_15845 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLD04_15845 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CLD04_15845 PF16582 Middle domain of thiamine pyrophosphate CLD04_15850 PF00425 chorismate binding enzyme CLD04_15855 PF01258 Prokaryotic dksA/traR C4-type zinc finger CLD04_15860 PF00483 Nucleotidyl transferase CLD04_15865 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CLD04_15865 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CLD04_15865 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CLD04_15870 PF01370 NAD dependent epimerase/dehydratase family CLD04_15875 PF13439 Glycosyltransferase Family 4 CLD04_15875 PF00534 Glycosyl transferases group 1 CLD04_15890 PF00534 Glycosyl transferases group 1 CLD04_15890 PF13439 Glycosyltransferase Family 4 CLD04_15895 PF01636 Phosphotransferase enzyme family CLD04_15900 PF03073 TspO/MBR family CLD04_15905 PF00343 Carbohydrate phosphorylase CLD04_15910 PF00534 Glycosyl transferases group 1 CLD04_15910 PF08323 Starch synthase catalytic domain CLD04_15915 PF00483 Nucleotidyl transferase CLD04_15920 PF00483 Nucleotidyl transferase CLD04_15925 PF00128 Alpha amylase, catalytic domain CLD04_15925 PF02806 Alpha amylase, C-terminal all-beta domain CLD04_15925 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CLD04_16050 PF09515 Thiamine transporter protein (Thia_YuaJ) CLD04_16055 PF00583 Acetyltransferase (GNAT) family CLD04_16060 PF01145 SPFH domain / Band 7 family CLD04_16060 PF15975 Flotillin CLD04_16070 PF12867 DinB superfamily CLD04_16080 PF00465 Iron-containing alcohol dehydrogenase CLD04_16095 PF17735 Biofilm surface layer A CLD04_16105 PF02080 TrkA-C domain CLD04_16105 PF02254 TrkA-N domain CLD04_16110 PF02386 Cation transport protein CLD04_16115 PF05360 yiaA/B two helix domain CLD04_16120 PF13457 GW (Gly-Tryp) dipeptide domain CLD04_16120 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CLD04_16125 PF07690 Major Facilitator Superfamily CLD04_16130 PF05995 Cysteine dioxygenase type I CLD04_16140 PF02673 Bacitracin resistance protein BacA CLD04_16145 PF01594 AI-2E family transporter CLD04_16150 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CLD04_16150 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CLD04_16155 PF06134 L-rhamnose isomerase (RhaA) CLD04_16160 PF05336 L-rhamnose mutarotase CLD04_16165 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CLD04_16165 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CLD04_16170 PF08220 DeoR-like helix-turn-helix domain CLD04_16170 PF00455 DeoR C terminal sensor domain CLD04_16175 PF00596 Class II Aldolase and Adducin N-terminal domain CLD04_16185 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLD04_16185 PF02743 Cache domain CLD04_16185 PF00672 HAMP domain CLD04_16190 PF02743 Cache domain CLD04_16190 PF00672 HAMP domain CLD04_16190 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLD04_16195 PF02743 Cache domain CLD04_16195 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLD04_16195 PF00672 HAMP domain CLD04_16200 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLD04_16200 PF02743 Cache domain CLD04_16200 PF00672 HAMP domain CLD04_16215 PF01894 Uncharacterised protein family UPF0047 CLD04_16220 PF00128 Alpha amylase, catalytic domain CLD04_16220 PF16657 Maltogenic Amylase, C-terminal domain CLD04_16225 PF03471 Transporter associated domain CLD04_16225 PF00571 CBS domain CLD04_16225 PF01595 Cyclin M transmembrane N-terminal domain CLD04_16230 PF04298 Putative neutral zinc metallopeptidase CLD04_16240 PF11458 Membrane-integrating protein Mistic CLD04_16245 PF02254 TrkA-N domain CLD04_16245 PF07885 Ion channel CLD04_16250 PF08868 YugN-like family CLD04_16260 PF00342 Phosphoglucose isomerase CLD04_16265 PF00465 Iron-containing alcohol dehydrogenase CLD04_16270 PF00465 Iron-containing alcohol dehydrogenase CLD04_16275 PF04070 Domain of unknown function (DUF378) CLD04_16280 PF00575 S1 RNA binding domain CLD04_16285 PF00155 Aminotransferase class I and II CLD04_16290 PF01037 Lrp/AsnC ligand binding domain CLD04_16295 PF08386 TAP-like protein CLD04_16295 PF00561 alpha/beta hydrolase fold CLD04_16300 PF08958 Domain of unknown function (DUF1871) CLD04_16305 PF00155 Aminotransferase class I and II CLD04_16310 PF00512 His Kinase A (phospho-acceptor) domain CLD04_16310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLD04_16315 PF08810 Kinase associated protein B CLD04_16320 PF00929 Exonuclease CLD04_16330 PF07690 Major Facilitator Superfamily CLD04_16335 PF00905 Penicillin binding protein transpeptidase domain CLD04_16335 PF00912 Transglycosylase CLD04_16340 PF04134 Protein of unknown function, DUF393 CLD04_16345 PF17328 Family of unknown function (DUF5366) CLD04_16350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLD04_16350 PF00989 PAS fold CLD04_16350 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CLD04_16350 PF17203 Single cache domain 3 CLD04_16355 PF00072 Response regulator receiver domain CLD04_16380 PF03390 2-hydroxycarboxylate transporter family CLD04_16390 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CLD04_16390 PF13244 Domain of unknown function (DUF4040) CLD04_16390 PF00361 Proton-conducting membrane transporter CLD04_16395 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter CLD04_16400 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CLD04_16405 PF00361 Proton-conducting membrane transporter CLD04_16410 PF01899 Na+/H+ ion antiporter subunit CLD04_16415 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) CLD04_16420 PF03334 Na+/H+ antiporter subunit CLD04_16425 PF03061 Thioesterase superfamily CLD04_16430 PF00196 Bacterial regulatory proteins, luxR family CLD04_16430 PF00072 Response regulator receiver domain CLD04_16445 PF00348 Polyprenyl synthetase CLD04_16450 PF08181 DegQ (SacQ) family CLD04_16460 PF00563 EAL domain CLD04_16460 PF08668 HDOD domain CLD04_16465 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CLD04_16465 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain CLD04_16465 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CLD04_16470 PF00857 Isochorismatase family CLD04_16475 PF07997 Protein of unknown function (DUF1694) CLD04_16480 PF14166 YueH-like protein CLD04_16485 PF10676 Spore germination protein gerPA/gerPF CLD04_16490 PF01594 AI-2E family transporter CLD04_16495 PF10049 Protein of unknown function (DUF2283) CLD04_16505 PF01966 HD domain CLD04_16510 PF00106 short chain dehydrogenase CLD04_16515 PF17355 Family of unknown function (DUF5383) CLD04_16525 PF01580 FtsK/SpoIIIE family CLD04_16525 PF12538 DNA transporter CLD04_16530 PF10140 WXG100 protein secretion system (Wss), protein YukC CLD04_16535 PF08817 WXG100 protein secretion system (Wss), protein YukD CLD04_16540 PF06013 Proteins of 100 residues with WXG CLD04_16550 PF06018 CodY GAF-like domain CLD04_16550 PF13556 PucR C-terminal helix-turn-helix domain CLD04_16550 PF17853 GGDEF-like domain CLD04_16555 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CLD04_16555 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CLD04_16560 PF10042 Uncharacterized conserved protein (DUF2278) CLD04_16565 PF03621 MbtH-like protein CLD04_16570 PF00668 Condensation domain CLD04_16570 PF00550 Phosphopantetheine attachment site CLD04_16570 PF13193 AMP-binding enzyme C-terminal domain CLD04_16570 PF00501 AMP-binding enzyme CLD04_16570 PF00975 Thioesterase domain CLD04_16575 PF00550 Phosphopantetheine attachment site CLD04_16575 PF00857 Isochorismatase family CLD04_16580 PF13193 AMP-binding enzyme C-terminal domain CLD04_16580 PF00501 AMP-binding enzyme CLD04_16585 PF00425 chorismate binding enzyme CLD04_16590 PF00106 short chain dehydrogenase CLD04_16595 PF00756 Putative esterase CLD04_16600 PF00174 Oxidoreductase molybdopterin binding domain CLD04_16605 PF02632 BioY family CLD04_16610 PF13726 Na+-H+ antiporter family CLD04_16610 PF03553 Na+/H+ antiporter family CLD04_16615 PF00883 Cytosol aminopeptidase family, catalytic domain CLD04_16615 PF02789 Cytosol aminopeptidase family, N-terminal domain CLD04_16620 PF02681 Divergent PAP2 family CLD04_16625 PF06725 3D domain CLD04_16630 PF14068 Putative membrane protein CLD04_16635 PF17302 Family of unknown function (DUF5351) CLD04_16640 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLD04_16645 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLD04_16655 PF00478 IMP dehydrogenase / GMP reductase domain CLD04_16660 PF04299 Putative FMN-binding domain CLD04_16665 PF00583 Acetyltransferase (GNAT) family CLD04_16670 PF01521 Iron-sulphur cluster biosynthesis CLD04_16675 PF01678 Diaminopimelate epimerase CLD04_16680 PF01773 Na+ dependent nucleoside transporter N-terminus CLD04_16680 PF07662 Na+ dependent nucleoside transporter C-terminus CLD04_16685 PF07293 Protein of unknown function (DUF1450) CLD04_16690 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLD04_16695 PF07315 Protein of unknown function (DUF1462) CLD04_16700 PF01106 NifU-like domain CLD04_16705 PF07676 WD40-like Beta Propeller Repeat CLD04_16705 PF00326 Prolyl oligopeptidase family CLD04_16710 PF08544 GHMP kinases C terminal CLD04_16710 PF00288 GHMP kinases N terminal domain CLD04_16715 PF00291 Pyridoxal-phosphate dependent enzyme CLD04_16720 PF00742 Homoserine dehydrogenase CLD04_16720 PF01842 ACT domain CLD04_16720 PF03447 Homoserine dehydrogenase, NAD binding domain CLD04_16730 PF04608 Phosphatidylglycerophosphatase A CLD04_16735 PF13344 Haloacid dehalogenase-like hydrolase CLD04_16740 PF01934 Protein of unknown function DUF86 CLD04_16745 PF06265 Protein of unknown function (DUF1027) CLD04_16750 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) CLD04_16755 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CLD04_16755 PF04055 Radical SAM superfamily CLD04_16760 PF01551 Peptidase family M23 CLD04_16765 PF09560 Sporulation protein YunB (Spo_YunB) CLD04_16770 PF08827 Domain of unknown function (DUF1805) CLD04_16775 PF02872 5'-nucleotidase, C-terminal domain CLD04_16780 PF01925 Sulfite exporter TauE/SafE CLD04_16785 PF01904 Protein of unknown function DUF72 CLD04_16795 PF01979 Amidohydrolase family CLD04_16800 PF13556 PucR C-terminal helix-turn-helix domain CLD04_16800 PF07905 Purine catabolism regulatory protein-like family CLD04_16800 PF17853 GGDEF-like domain CLD04_16805 PF00860 Permease family CLD04_16810 PF00860 Permease family CLD04_16815 PF09349 OHCU decarboxylase CLD04_16815 PF01014 Uricase CLD04_16820 PF00576 HIUase/Transthyretin family CLD04_16825 PF09680 Family of unknown function CLD04_16830 PF00111 2Fe-2S iron-sulfur cluster binding domain CLD04_16830 PF01799 [2Fe-2S] binding domain CLD04_16835 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CLD04_16835 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase CLD04_16840 PF00941 FAD binding domain in molybdopterin dehydrogenase CLD04_16845 PF12804 MobA-like NTP transferase domain CLD04_16850 PF02625 XdhC and CoxI family CLD04_16850 PF13478 XdhC Rossmann domain CLD04_16855 PF00266 Aminotransferase class-V CLD04_16860 PF01546 Peptidase family M20/M25/M40 CLD04_16865 PF04231 Endonuclease I CLD04_16880 PF00392 Bacterial regulatory proteins, gntR family CLD04_16880 PF00155 Aminotransferase class I and II CLD04_16890 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CLD04_16890 PF01588 Putative tRNA binding domain CLD04_16890 PF03147 Ferredoxin-fold anticodon binding domain CLD04_16890 PF03484 tRNA synthetase B5 domain CLD04_16890 PF03483 B3/4 domain CLD04_16895 PF01053 Cys/Met metabolism PLP-dependent enzyme CLD04_16905 PF03459 TOBE domain CLD04_16905 PF00005 ABC transporter CLD04_16905 PF17912 MalK OB fold domain CLD04_16910 PF07702 UTRA domain CLD04_16910 PF00392 Bacterial regulatory proteins, gntR family CLD04_16925 PF01547 Bacterial extracellular solute-binding protein CLD04_16930 PF01380 SIS domain CLD04_16935 PF01541 GIY-YIG catalytic domain CLD04_16940 PF01266 FAD dependent oxidoreductase CLD04_16960 PF01458 Uncharacterized protein family (UPF0051) CLD04_16965 PF01592 NifU-like N terminal domain CLD04_16970 PF00266 Aminotransferase class-V CLD04_16975 PF01458 Uncharacterized protein family (UPF0051) CLD04_16980 PF00005 ABC transporter CLD04_16995 PF02627 Carboxymuconolactone decarboxylase family CLD04_17000 PF03180 NLPA lipoprotein CLD04_17005 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_17010 PF00005 ABC transporter CLD04_17010 PF09383 NIL domain CLD04_17015 PF02036 SCP-2 sterol transfer family CLD04_17020 PF00085 Thioredoxin CLD04_17025 PF01751 Toprim domain CLD04_17030 PF10830 Protein of unknown function (DUF2553) CLD04_17035 PF01597 Glycine cleavage H-protein CLD04_17040 PF03960 ArsC family CLD04_17045 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLD04_17045 PF02770 Acyl-CoA dehydrogenase, middle domain CLD04_17045 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLD04_17050 PF02803 Thiolase, C-terminal domain CLD04_17050 PF00108 Thiolase, N-terminal domain CLD04_17055 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CLD04_17055 PF00378 Enoyl-CoA hydratase/isomerase CLD04_17055 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CLD04_17060 PF14115 YuzL-like protein CLD04_17065 PF01619 Proline dehydrogenase CLD04_17075 PF07875 Coat F domain CLD04_17080 PF01047 MarR family CLD04_17085 PF07690 Major Facilitator Superfamily CLD04_17090 PF14552 Tautomerase enzyme CLD04_17100 PF03466 LysR substrate binding domain CLD04_17100 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLD04_17105 PF10835 Protein of unknown function (DUF2573) CLD04_17110 PF00005 ABC transporter CLD04_17115 PF14039 YusW-like protein CLD04_17125 PF00106 short chain dehydrogenase CLD04_17130 PF00210 Ferritin-like domain CLD04_17135 PF13180 PDZ domain CLD04_17140 PF00486 Transcriptional regulatory protein, C terminal CLD04_17140 PF00072 Response regulator receiver domain CLD04_17145 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLD04_17145 PF00672 HAMP domain CLD04_17145 PF00512 His Kinase A (phospho-acceptor) domain CLD04_17155 PF00440 Bacterial regulatory proteins, tetR family CLD04_17160 PF00206 Lyase CLD04_17160 PF10415 Fumarase C C-terminus CLD04_17165 PF13113 Protein of unknown function (DUF3970) CLD04_17170 PF03323 Bacillus/Clostridium GerA spore germination protein CLD04_17175 PF03845 Spore germination protein CLD04_17180 PF05504 Spore germination B3/ GerAC like, C-terminal CLD04_17185 PF00196 Bacterial regulatory proteins, luxR family CLD04_17185 PF00072 Response regulator receiver domain CLD04_17190 PF07730 Histidine kinase CLD04_17190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLD04_17190 PF00672 HAMP domain CLD04_17195 PF09922 Cell wall-active antibiotics response 4TMS YvqF CLD04_17200 PF13349 Putative adhesin CLD04_17205 PF04012 PspA/IM30 family CLD04_17215 PF07690 Major Facilitator Superfamily CLD04_17220 PF01923 Cobalamin adenosyltransferase CLD04_17225 PF00005 ABC transporter CLD04_17230 PF01032 FecCD transport family CLD04_17235 PF01497 Periplasmic binding protein CLD04_17240 PF00106 short chain dehydrogenase CLD04_17245 PF08450 SMP-30/Gluconolactonase/LRE-like region CLD04_17250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLD04_17250 PF00512 His Kinase A (phospho-acceptor) domain CLD04_17255 PF00072 Response regulator receiver domain CLD04_17255 PF00486 Transcriptional regulatory protein, C terminal CLD04_17265 PF04545 Sigma-70, region 4 CLD04_17270 PF12841 YvrJ protein family CLD04_17275 PF00190 Cupin CLD04_17280 PF14184 Regulatory protein YrvL CLD04_17285 PF02687 FtsX-like permease family CLD04_17285 PF12704 MacB-like periplasmic core domain CLD04_17290 PF00005 ABC transporter CLD04_17295 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion CLD04_17300 PF00005 ABC transporter CLD04_17305 PF01032 FecCD transport family CLD04_17310 PF01032 FecCD transport family CLD04_17315 PF01497 Periplasmic binding protein CLD04_17325 PF13520 Amino acid permease CLD04_17335 PF09575 Small spore protein J (Spore_SspJ) CLD04_17340 PF04307 LexA-binding, inner membrane-associated putative hydrolase CLD04_17345 PF00884 Sulfatase CLD04_17350 PF12727 PBP superfamily domain CLD04_17350 PF12728 Helix-turn-helix domain CLD04_17360 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_17365 PF00248 Aldo/keto reductase family CLD04_17375 PF00999 Sodium/hydrogen exchanger family CLD04_17380 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CLD04_17380 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CLD04_17385 PF00258 Flavodoxin CLD04_17385 PF00667 FAD binding domain CLD04_17385 PF00175 Oxidoreductase NAD-binding domain CLD04_17390 PF13538 UvrD-like helicase C-terminal domain CLD04_17395 PF03458 UPF0126 domain CLD04_17400 PF02600 Disulfide bond formation protein DsbB CLD04_17405 PF13462 Thioredoxin CLD04_17410 PF00403 Heavy-metal-associated domain CLD04_17415 PF00403 Heavy-metal-associated domain CLD04_17420 PF00403 Heavy-metal-associated domain CLD04_17425 PF02583 Metal-sensitive transcriptional repressor CLD04_17430 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CLD04_17430 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CLD04_17435 PF02525 Flavodoxin-like fold CLD04_17445 PF17314 Family of unknown function (DUF5360) CLD04_17450 PF00893 Small Multidrug Resistance protein CLD04_17455 PF00440 Bacterial regulatory proteins, tetR family CLD04_17460 PF00106 short chain dehydrogenase CLD04_17470 PF01668 SmpB protein CLD04_17475 PF08206 Ribonuclease B OB domain CLD04_17475 PF17876 Cold shock domain CLD04_17475 PF00575 S1 RNA binding domain CLD04_17475 PF00773 RNB domain CLD04_17480 PF12146 Serine aminopeptidase, S33 CLD04_17485 PF03840 Preprotein translocase SecG subunit CLD04_17490 PF00561 alpha/beta hydrolase fold CLD04_17495 PF01381 Helix-turn-helix CLD04_17510 PF01638 HxlR-like helix-turn-helix CLD04_17515 PF12729 Four helix bundle sensory module for signal transduction CLD04_17515 PF00672 HAMP domain CLD04_17515 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CLD04_17520 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_17525 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CLD04_17530 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_17535 PF00005 ABC transporter CLD04_17535 PF00571 CBS domain CLD04_17540 PF12802 MarR family CLD04_17545 PF17418 Sporulation delaying protein SdpA CLD04_17550 PF05090 Vitamin K-dependent gamma-carboxylase CLD04_17560 PF13630 SdpI/YhfL protein family CLD04_17560 PF07853 Protein of unknown function (DUF1648) CLD04_17565 PF01022 Bacterial regulatory protein, arsR family CLD04_17570 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_17575 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CLD04_17580 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_17585 PF00571 CBS domain CLD04_17585 PF00005 ABC transporter CLD04_17590 PF12802 MarR family CLD04_17595 PF01914 MarC family integral membrane protein CLD04_17600 PF08000 Bacterial PH domain CLD04_17600 PF11724 YvbH-like oligomerisation region CLD04_17610 PF13240 zinc-ribbon domain CLD04_17615 PF00583 Acetyltransferase (GNAT) family CLD04_17620 PF03952 Enolase, N-terminal domain CLD04_17620 PF00113 Enolase, C-terminal TIM barrel domain CLD04_17625 PF01676 Metalloenzyme superfamily CLD04_17625 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CLD04_17630 PF00121 Triosephosphate isomerase CLD04_17635 PF00162 Phosphoglycerate kinase CLD04_17640 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CLD04_17640 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CLD04_17645 PF04198 Putative sugar-binding domain CLD04_17650 PF00083 Sugar (and other) transporter CLD04_17655 PF00392 Bacterial regulatory proteins, gntR family CLD04_17660 PF00296 Luciferase-like monooxygenase CLD04_17670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLD04_17670 PF03466 LysR substrate binding domain CLD04_17675 PF00892 EamA-like transporter family CLD04_17680 PF00324 Amino acid permease CLD04_17685 PF00704 Glycosyl hydrolases family 18 CLD04_17690 PF02589 LUD domain CLD04_17695 PF11870 Domain of unknown function (DUF3390) CLD04_17695 PF02589 LUD domain CLD04_17695 PF13183 4Fe-4S dicluster domain CLD04_17700 PF02754 Cysteine-rich domain CLD04_17730 PF07730 Histidine kinase CLD04_17730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLD04_17740 PF00005 ABC transporter CLD04_17745 PF12697 Alpha/beta hydrolase family CLD04_17750 PF07228 Stage II sporulation protein E (SpoIIE) CLD04_17750 PF13426 PAS domain CLD04_17755 PF07745 Glycosyl hydrolase family 53 CLD04_17760 PF08532 Beta-galactosidase trimerisation domain CLD04_17760 PF08533 Beta-galactosidase C-terminal domain CLD04_17760 PF02449 Beta-galactosidase CLD04_17765 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_17770 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_17775 PF13416 Bacterial extracellular solute-binding protein CLD04_17780 PF00356 Bacterial regulatory proteins, lacI family CLD04_17785 PF00392 Bacterial regulatory proteins, gntR family CLD04_17785 PF07729 FCD domain CLD04_17790 PF02652 L-lactate permease CLD04_17795 PF04963 Sigma-54 factor, core binding domain CLD04_17795 PF04552 Sigma-54, DNA binding domain CLD04_17795 PF00309 Sigma-54 factor, Activator interacting domain (AID) CLD04_17805 PF04230 Polysaccharide pyruvyl transferase CLD04_17810 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CLD04_17815 PF00132 Bacterial transferase hexapeptide (six repeats) CLD04_17815 PF17836 PglD N-terminal domain CLD04_17820 PF02397 Bacterial sugar transferase CLD04_17825 PF14667 Polysaccharide biosynthesis C-terminal domain CLD04_17825 PF01943 Polysaccharide biosynthesis protein CLD04_17830 PF00535 Glycosyl transferase family 2 CLD04_17835 PF04230 Polysaccharide pyruvyl transferase CLD04_17840 PF00535 Glycosyl transferase family 2 CLD04_17850 PF00534 Glycosyl transferases group 1 CLD04_17850 PF13439 Glycosyltransferase Family 4 CLD04_17855 PF00535 Glycosyl transferase family 2 CLD04_17860 PF13439 Glycosyltransferase Family 4 CLD04_17860 PF00534 Glycosyl transferases group 1 CLD04_17865 PF02719 Polysaccharide biosynthesis protein CLD04_17870 PF13614 AAA domain CLD04_17875 PF02706 Chain length determinant protein CLD04_17880 PF08671 Anti-repressor SinI CLD04_17880 PF01381 Helix-turn-helix CLD04_17885 PF00135 Carboxylesterase family CLD04_17895 PF05870 Phenolic acid decarboxylase (PAD) CLD04_17905 PF01177 Asp/Glu/Hydantoin racemase CLD04_17910 PF11954 Domain of unknown function (DUF3471) CLD04_17910 PF00144 Beta-lactamase CLD04_17915 PF02435 Levansucrase/Invertase CLD04_17920 PF00251 Glycosyl hydrolases family 32 N-terminal domain CLD04_17920 PF08244 Glycosyl hydrolases family 32 C terminal CLD04_17925 PF13520 Amino acid permease CLD04_17930 PF00440 Bacterial regulatory proteins, tetR family CLD04_17930 PF17934 Tetracyclin repressor-like, C-terminal domain CLD04_17935 PF00893 Small Multidrug Resistance protein CLD04_17940 PF00893 Small Multidrug Resistance protein CLD04_17955 PF00574 Clp protease CLD04_17960 PF13419 Haloacid dehalogenase-like hydrolase CLD04_17965 PF16657 Maltogenic Amylase, C-terminal domain CLD04_17965 PF00128 Alpha amylase, catalytic domain CLD04_17970 PF03636 Glycosyl hydrolase family 65, N-terminal domain CLD04_17970 PF03633 Glycosyl hydrolase family 65, C-terminal domain CLD04_17970 PF03632 Glycosyl hydrolase family 65 central catalytic domain CLD04_17975 PF06691 Protein of unknown function (DUF1189) CLD04_17980 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_17985 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_17990 PF13416 Bacterial extracellular solute-binding protein CLD04_17995 PF02903 Alpha amylase, N-terminal ig-like domain CLD04_17995 PF00128 Alpha amylase, catalytic domain CLD04_18000 PF00356 Bacterial regulatory proteins, lacI family CLD04_18005 PF03641 Possible lysine decarboxylase CLD04_18010 PF03819 MazG nucleotide pyrophosphohydrolase domain CLD04_18015 PF01740 STAS domain CLD04_18015 PF00916 Sulfate permease family CLD04_18020 PF00484 Carbonic anhydrase CLD04_18025 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CLD04_18025 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CLD04_18030 PF02687 FtsX-like permease family CLD04_18035 PF00005 ABC transporter CLD04_18040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLD04_18045 PF00072 Response regulator receiver domain CLD04_18045 PF00486 Transcriptional regulatory protein, C terminal CLD04_18055 PF00797 N-acetyltransferase CLD04_18060 PF00381 PTS HPr component phosphorylation site CLD04_18065 PF14527 WhiA LAGLIDADG-like domain CLD04_18065 PF02650 WhiA C-terminal HTH domain CLD04_18065 PF10298 WhiA N-terminal LAGLIDADG-like domain CLD04_18070 PF01933 Uncharacterised protein family UPF0052 CLD04_18075 PF03668 P-loop ATPase protein family CLD04_18080 PF00293 NUDIX domain CLD04_18085 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLD04_18090 PF00877 NlpC/P60 family CLD04_18100 PF00664 ABC transporter transmembrane region CLD04_18100 PF00005 ABC transporter CLD04_18120 PF01502 Phosphoribosyl-AMP cyclohydrolase CLD04_18120 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CLD04_18125 PF00977 Histidine biosynthesis protein CLD04_18130 PF00977 Histidine biosynthesis protein CLD04_18135 PF00117 Glutamine amidotransferase class-I CLD04_18140 PF00475 Imidazoleglycerol-phosphate dehydratase CLD04_18145 PF00815 Histidinol dehydrogenase CLD04_18150 PF01634 ATP phosphoribosyltransferase CLD04_18155 PF13393 Histidyl-tRNA synthetase CLD04_18160 PF13529 Peptidase_C39 like family CLD04_18165 PF03211 Pectate lyase CLD04_18170 PF14602 Hexapeptide repeat of succinyl-transferase CLD04_18175 PF13419 Haloacid dehalogenase-like hydrolase CLD04_18180 PF07670 Nucleoside recognition CLD04_18185 PF01790 Prolipoprotein diacylglyceryl transferase CLD04_18190 PF07475 HPr Serine kinase C-terminal domain CLD04_18190 PF02603 HPr Serine kinase N terminus CLD04_18195 PF01979 Amidohydrolase family CLD04_18200 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CLD04_18210 PF00149 Calcineurin-like phosphoesterase CLD04_18215 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV CLD04_18220 PF04024 PspC domain CLD04_18225 PF13349 Putative adhesin CLD04_18240 PF00669 Bacterial flagellin N-terminal helical region CLD04_18240 PF00700 Bacterial flagellin C-terminal helical region CLD04_18245 PF00005 ABC transporter CLD04_18245 PF17755 UvrA DNA-binding domain CLD04_18245 PF17760 UvrA interaction domain CLD04_18250 PF12344 Ultra-violet resistance protein B CLD04_18250 PF02151 UvrB/uvrC motif CLD04_18250 PF04851 Type III restriction enzyme, res subunit CLD04_18250 PF00271 Helicase conserved C-terminal domain CLD04_18250 PF17757 UvrB interaction domain CLD04_18255 PF09964 Uncharacterized protein conserved in bacteria (DUF2198) CLD04_18260 PF00391 PEP-utilising enzyme, mobile domain CLD04_18260 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CLD04_18265 PF00440 Bacterial regulatory proteins, tetR family CLD04_18270 PF07690 Major Facilitator Superfamily CLD04_18275 PF17820 PDZ domain CLD04_18280 PF17423 Swarming motility protein CLD04_18285 PF01471 Putative peptidoglycan binding domain CLD04_18285 PF17820 PDZ domain CLD04_18285 PF03572 Peptidase family S41 CLD04_18290 PF02687 FtsX-like permease family CLD04_18290 PF18075 FtsX extracellular domain CLD04_18295 PF00005 ABC transporter CLD04_18300 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CLD04_18305 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CLD04_18305 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CLD04_18315 PF07517 SecA DEAD-like domain CLD04_18315 PF07516 SecA Wing and Scaffold domain CLD04_18315 PF02810 SEC-C motif CLD04_18315 PF01043 SecA preprotein cross-linking domain CLD04_18325 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CLD04_18325 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus CLD04_18340 PF02561 Flagellar protein FliS CLD04_18345 PF07195 Flagellar hook-associated protein 2 C-terminus CLD04_18345 PF02465 Flagellar hook-associated protein 2 N-terminus CLD04_18345 PF07196 Flagellin hook IN motif CLD04_18350 PF03646 FlaG protein CLD04_18360 PF00669 Bacterial flagellin N-terminal helical region CLD04_18360 PF00700 Bacterial flagellin C-terminal helical region CLD04_18365 PF02599 Global regulator protein family CLD04_18370 PF02623 FliW protein CLD04_18380 PF00669 Bacterial flagellin N-terminal helical region CLD04_18380 PF00700 Bacterial flagellin C-terminal helical region CLD04_18385 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLD04_18385 PF00460 Flagella basal body rod protein CLD04_18390 PF05130 FlgN protein CLD04_18395 PF04316 Anti-sigma-28 factor, FlgM CLD04_18415 PF00271 Helicase conserved C-terminal domain CLD04_18415 PF04851 Type III restriction enzyme, res subunit CLD04_18420 PF02645 Uncharacterised protein, DegV family COG1307 CLD04_18425 PF00196 Bacterial regulatory proteins, luxR family CLD04_18425 PF00072 Response regulator receiver domain CLD04_18430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLD04_18430 PF07730 Histidine kinase CLD04_18430 PF05384 Sensor protein DegS CLD04_18435 PF09186 Domain of unknown function (DUF1949) CLD04_18435 PF01205 Uncharacterized protein family UPF0029 CLD04_18440 PF03816 Cell envelope-related transcriptional attenuator domain CLD04_18445 PF00953 Glycosyl transferase family 4 CLD04_18455 PF00535 Glycosyl transferase family 2 CLD04_18460 PF02706 Chain length determinant protein CLD04_18465 PF04932 O-Antigen ligase CLD04_18470 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CLD04_18470 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CLD04_18470 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CLD04_18475 PF00534 Glycosyl transferases group 1 CLD04_18475 PF13439 Glycosyltransferase Family 4 CLD04_18480 PF14667 Polysaccharide biosynthesis C-terminal domain CLD04_18480 PF01943 Polysaccharide biosynthesis protein CLD04_18485 PF02397 Bacterial sugar transferase CLD04_18490 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 CLD04_18490 PF00535 Glycosyl transferase family 2 CLD04_18495 PF01520 N-acetylmuramoyl-L-alanine amidase CLD04_18495 PF04122 Putative cell wall binding repeat 2 CLD04_18500 PF04122 Putative cell wall binding repeat 2 CLD04_18500 PF08486 Stage II sporulation protein CLD04_18510 PF03816 Cell envelope-related transcriptional attenuator domain CLD04_18515 PF02350 UDP-N-acetylglucosamine 2-epimerase CLD04_18520 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 CLD04_18520 PF00535 Glycosyl transferase family 2 CLD04_18525 PF00534 Glycosyl transferases group 1 CLD04_18535 PF00483 Nucleotidyl transferase CLD04_18540 PF00005 ABC transporter CLD04_18545 PF01061 ABC-2 type transporter CLD04_18560 PF00535 Glycosyl transferase family 2 CLD04_18560 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase CLD04_18570 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase CLD04_18575 PF01467 Cytidylyltransferase-like CLD04_18580 PF03808 Glycosyl transferase WecB/TagA/CpsF family CLD04_18585 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase CLD04_18590 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CLD04_18595 PF16912 Glucose dehydrogenase C-terminus CLD04_18595 PF08240 Alcohol dehydrogenase GroES-like domain CLD04_18600 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase CLD04_18605 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase CLD04_18610 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CLD04_18610 PF05036 Sporulation related domain CLD04_18610 PF08239 Bacterial SH3 domain CLD04_18615 PF01238 Phosphomannose isomerase type I CLD04_18620 PF03323 Bacillus/Clostridium GerA spore germination protein CLD04_18625 PF03845 Spore germination protein CLD04_18630 PF05504 Spore germination B3/ GerAC like, C-terminal CLD04_18635 PF00083 Sugar (and other) transporter CLD04_18640 PF03816 Cell envelope-related transcriptional attenuator domain CLD04_18655 PF00877 NlpC/P60 family CLD04_18665 PF09587 Bacterial capsule synthesis protein PGA_cap CLD04_18670 PF14102 Capsule biosynthesis CapC CLD04_18675 PF08245 Mur ligase middle domain CLD04_18680 PF00356 Bacterial regulatory proteins, lacI family CLD04_18685 PF00294 pfkB family carbohydrate kinase CLD04_18690 PF05025 RbsD / FucU transport protein family CLD04_18695 PF00005 ABC transporter CLD04_18700 PF02653 Branched-chain amino acid transport system / permease component CLD04_18705 PF13407 Periplasmic binding protein domain CLD04_18710 PF08239 Bacterial SH3 domain CLD04_18715 PF13031 Protein of unknown function (DUF3892) CLD04_18720 PF02525 Flavodoxin-like fold CLD04_18725 PF03306 Alpha-acetolactate decarboxylase CLD04_18730 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLD04_18730 PF00205 Thiamine pyrophosphate enzyme, central domain CLD04_18730 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CLD04_18735 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLD04_18735 PF03466 LysR substrate binding domain CLD04_18755 PF08757 CotH kinase protein CLD04_18765 PF01613 Flavin reductase like domain CLD04_18770 PF13789 Domain of unknown function (DUF4181) CLD04_18780 PF13404 AsnC-type helix-turn-helix domain CLD04_18780 PF01037 Lrp/AsnC ligand binding domain CLD04_18785 PF02417 Chromate transporter CLD04_18790 PF02417 Chromate transporter CLD04_18795 PF04493 Endonuclease V CLD04_18820 PF14431 YwqJ-like deaminase CLD04_18820 PF14449 Pre-toxin TG CLD04_18820 PF04740 LXG domain of WXG superfamily CLD04_18830 PF16888 Domain of unknown function (DUF5082) CLD04_18845 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CLD04_18845 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CLD04_18845 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CLD04_18855 PF13614 AAA domain CLD04_18860 PF02706 Chain length determinant protein CLD04_18860 PF13807 G-rich domain on putative tyrosine kinase CLD04_18870 PF04434 SWIM zinc finger CLD04_18875 PF12419 SNF2 Helicase protein CLD04_18875 PF00176 SNF2 family N-terminal domain CLD04_18875 PF00271 Helicase conserved C-terminal domain CLD04_18890 PF00455 DeoR C terminal sensor domain CLD04_18890 PF08220 DeoR-like helix-turn-helix domain CLD04_18895 PF00436 Single-strand binding protein family CLD04_18905 PF14183 YwpF-like protein CLD04_18910 PF04203 Sortase domain CLD04_18915 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLD04_18915 PF06580 Histidine kinase CLD04_18920 PF01741 Large-conductance mechanosensitive channel, MscL CLD04_18925 PF07977 FabA-like domain CLD04_18930 PF18801 response regulator aspartate phosphatase H, N terminal CLD04_18935 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLD04_18935 PF00460 Flagella basal body rod protein CLD04_18940 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CLD04_18940 PF00460 Flagella basal body rod protein CLD04_18950 PF12116 Stage III sporulation protein D CLD04_18960 PF01047 MarR family CLD04_18965 PF07690 Major Facilitator Superfamily CLD04_18970 PF13229 Right handed beta helix region CLD04_18975 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CLD04_18980 PF07690 Major Facilitator Superfamily CLD04_18985 PF00857 Isochorismatase family CLD04_18995 PF00909 Ammonium Transporter Family CLD04_19000 PF00543 Nitrogen regulatory protein P-II CLD04_19005 PF01569 PAP2 superfamily CLD04_19010 PF04892 VanZ like family CLD04_19015 PF01551 Peptidase family M23 CLD04_19020 PF00583 Acetyltransferase (GNAT) family CLD04_19025 PF17319 Family of unknown function (DUF5362) CLD04_19030 PF17370 Family of unknown function (DUF5392) CLD04_19035 PF13396 Phospholipase_D-nuclease N-terminal CLD04_19035 PF13091 PLD-like domain CLD04_19040 PF13411 MerR HTH family regulatory protein CLD04_19040 PF07739 TipAS antibiotic-recognition domain CLD04_19045 PF17319 Family of unknown function (DUF5362) CLD04_19050 PF13460 NAD(P)H-binding CLD04_19055 PF02082 Transcriptional regulator CLD04_19060 PF01979 Amidohydrolase family CLD04_19060 PF00449 Urease alpha-subunit, N-terminal domain CLD04_19065 PF00699 Urease beta subunit CLD04_19070 PF00547 Urease, gamma subunit CLD04_19075 PF00005 ABC transporter CLD04_19080 PF00005 ABC transporter CLD04_19080 PF12399 Branched-chain amino acid ATP-binding cassette transporter CLD04_19090 PF02653 Branched-chain amino acid transport system / permease component CLD04_19100 PF05532 CsbD-like CLD04_19110 PF18801 response regulator aspartate phosphatase H, N terminal CLD04_19110 PF17874 MalT-like TPR region CLD04_19120 PF06463 Molybdenum Cofactor Synthesis C CLD04_19120 PF04055 Radical SAM superfamily CLD04_19125 PF02634 FdhD/NarQ family CLD04_19135 PF00092 von Willebrand factor type A domain CLD04_19145 PF00092 von Willebrand factor type A domain CLD04_19150 PF08486 Stage II sporulation protein CLD04_19155 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CLD04_19160 PF08680 TATA-box binding CLD04_19165 PF06612 Protein of unknown function (DUF1146) CLD04_19175 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CLD04_19175 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CLD04_19180 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLD04_19180 PF02874 ATP synthase alpha/beta family, beta-barrel domain CLD04_19185 PF00231 ATP synthase CLD04_19190 PF02874 ATP synthase alpha/beta family, beta-barrel domain CLD04_19190 PF00306 ATP synthase alpha/beta chain, C terminal domain CLD04_19190 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLD04_19195 PF00213 ATP synthase delta (OSCP) subunit CLD04_19200 PF00430 ATP synthase B/B' CF(0) CLD04_19205 PF00137 ATP synthase subunit C CLD04_19210 PF00119 ATP synthase A chain CLD04_19215 PF03899 ATP synthase I chain CLD04_19225 PF00464 Serine hydroxymethyltransferase CLD04_19230 PF04260 Protein of unknown function (DUF436) CLD04_19235 PF02502 Ribose/Galactose Isomerase CLD04_19240 PF01451 Low molecular weight phosphotyrosine protein phosphatase CLD04_19245 PF02659 Putative manganese efflux pump CLD04_19250 PF03481 Putative GTP-binding controlling metal-binding CLD04_19250 PF01300 Telomere recombination CLD04_19260 PF09551 Stage II sporulation protein R (spore_II_R) CLD04_19265 PF17094 Uncharacterised protein family (UPF0715) CLD04_19270 PF17247 Family of unknown function (DUF5316) CLD04_19275 PF05175 Methyltransferase small domain CLD04_19275 PF17827 PrmC N-terminal domain CLD04_19280 PF00472 RF-1 domain CLD04_19280 PF03462 PCRF domain CLD04_19285 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLD04_19290 PF13411 MerR HTH family regulatory protein CLD04_19295 PF03547 Membrane transport protein CLD04_19300 PF03949 Malic enzyme, NAD binding domain CLD04_19300 PF00390 Malic enzyme, N-terminal domain CLD04_19305 PF00265 Thymidine kinase CLD04_19310 PF01197 Ribosomal protein L31 CLD04_19315 PF07497 Rho termination factor, RNA-binding domain CLD04_19315 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CLD04_19315 PF07498 Rho termination factor, N-terminal domain CLD04_19320 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CLD04_19325 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CLD04_19330 PF00923 Transaldolase/Fructose-6-phosphate aldolase CLD04_19335 PF01116 Fructose-bisphosphate aldolase class-II CLD04_19340 PF00072 Response regulator receiver domain CLD04_19345 PF10740 Domain of unknown function (DUF2529) CLD04_19350 PF00665 Integrase core domain CLD04_19350 PF13333 Integrase core domain CLD04_19355 PF00665 Integrase core domain CLD04_19355 PF13333 Integrase core domain CLD04_19360 PF00117 Glutamine amidotransferase class-I CLD04_19360 PF06418 CTP synthase N-terminus CLD04_19365 PF05066 HB1, ASXL, restriction endonuclease HTH domain CLD04_19370 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CLD04_19370 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CLD04_19370 PF02770 Acyl-CoA dehydrogenase, middle domain CLD04_19375 PF13183 4Fe-4S dicluster domain CLD04_19375 PF02754 Cysteine-rich domain CLD04_19380 PF13091 PLD-like domain CLD04_19385 PF03851 UV-endonuclease UvdE CLD04_19395 PF01872 RibD C-terminal domain CLD04_19400 PF00005 ABC transporter CLD04_19400 PF00664 ABC transporter transmembrane region CLD04_19405 PF13091 PLD-like domain CLD04_19405 PF13396 Phospholipase_D-nuclease N-terminal CLD04_19420 PF02665 Nitrate reductase gamma subunit CLD04_19425 PF02613 Nitrate reductase delta subunit CLD04_19430 PF13247 4Fe-4S dicluster domain CLD04_19430 PF14711 Respiratory nitrate reductase beta C-terminal CLD04_19435 PF00384 Molybdopterin oxidoreductase CLD04_19435 PF01568 Molydopterin dinucleotide binding domain CLD04_19435 PF14710 Respiratory nitrate reductase alpha N-terminal CLD04_19445 PF14256 YwiC-like protein CLD04_19450 PF00027 Cyclic nucleotide-binding domain CLD04_19450 PF00325 Bacterial regulatory proteins, crp family CLD04_19455 PF07690 Major Facilitator Superfamily CLD04_19460 PF03485 Arginyl tRNA synthetase N terminal domain CLD04_19460 PF05746 DALR anticodon binding domain CLD04_19460 PF00750 tRNA synthetases class I (R) CLD04_19465 PF09148 Domain of unknown function (DUF1934) CLD04_19470 PF11420 Bacteriocin subtilosin A CLD04_19480 PF04055 Radical SAM superfamily CLD04_19480 PF05402 Coenzyme PQQ synthesis protein D (PqqD) CLD04_19480 PF13186 Iron-sulfur cluster-binding domain CLD04_19490 PF00005 ABC transporter CLD04_19500 PF05193 Peptidase M16 inactive domain CLD04_19505 PF00675 Insulinase (Peptidase family M16) CLD04_19530 PF18801 response regulator aspartate phosphatase H, N terminal CLD04_19545 PF00491 Arginase family CLD04_19550 PF17284 Spermidine synthase tetramerisation domain CLD04_19555 PF00912 Transglycosylase CLD04_19555 PF00905 Penicillin binding protein transpeptidase domain CLD04_19565 PF08741 YwhD family CLD04_19570 PF02163 Peptidase family M50 CLD04_19575 PF01361 Tautomerase enzyme CLD04_19580 PF01047 MarR family CLD04_19585 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CLD04_19585 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CLD04_19585 PF03129 Anticodon binding domain CLD04_19585 PF02824 TGS domain CLD04_19590 PF07690 Major Facilitator Superfamily CLD04_19595 PF02082 Transcriptional regulator CLD04_19605 PF01966 HD domain CLD04_19610 PF07293 Protein of unknown function (DUF1450) CLD04_19620 PF00892 EamA-like transporter family CLD04_19625 PF03099 Biotin/lipoate A/B protein ligase family CLD04_19630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLD04_19630 PF03466 LysR substrate binding domain CLD04_19635 PF01515 Phosphate acetyl/butaryl transferase CLD04_19650 PF00155 Aminotransferase class I and II CLD04_19655 PF07690 Major Facilitator Superfamily CLD04_19680 PF07690 Major Facilitator Superfamily CLD04_19685 PF00324 Amino acid permease CLD04_19690 PF01546 Peptidase family M20/M25/M40 CLD04_19695 PF00171 Aldehyde dehydrogenase family CLD04_19700 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CLD04_19700 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CLD04_19705 PF17735 Biofilm surface layer A CLD04_19710 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CLD04_19715 PF04321 RmlD substrate binding domain CLD04_19720 PF16363 GDP-mannose 4,6 dehydratase CLD04_19725 PF00483 Nucleotidyl transferase CLD04_19730 PF04101 Glycosyltransferase family 28 C-terminal domain CLD04_19735 PF02348 Cytidylyltransferase CLD04_19740 PF03102 NeuB family CLD04_19740 PF08666 SAF domain CLD04_19745 PF00583 Acetyltransferase (GNAT) family CLD04_19750 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CLD04_19755 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase CLD04_19760 PF00535 Glycosyl transferase family 2 CLD04_19770 PF09671 Spore coat protein (Spore_GerQ) CLD04_19775 PF04241 Protein of unknown function (DUF423) CLD04_19780 PF00860 Permease family CLD04_19785 PF17261 Family of unknown function (DUF5327) CLD04_19790 PF00171 Aldehyde dehydrogenase family CLD04_19795 PF03167 Uracil DNA glycosylase superfamily CLD04_19800 PF00535 Glycosyl transferase family 2 CLD04_19815 PF03551 Transcriptional regulator PadR-like family CLD04_19820 PF08543 Phosphomethylpyrimidine kinase CLD04_19830 PF08244 Glycosyl hydrolases family 32 C terminal CLD04_19830 PF00251 Glycosyl hydrolases family 32 N-terminal domain CLD04_19835 PF00367 phosphotransferase system, EIIB CLD04_19835 PF02378 Phosphotransferase system, EIIC CLD04_19840 PF01226 Formate/nitrite transporter CLD04_19845 PF00874 PRD domain CLD04_19845 PF03123 CAT RNA binding domain CLD04_19855 PF05922 Peptidase inhibitor I9 CLD04_19855 PF02225 PA domain CLD04_19855 PF13860 FlgD Ig-like domain CLD04_19855 PF00082 Subtilase family CLD04_19860 PF00296 Luciferase-like monooxygenase CLD04_19865 PF00881 Nitroreductase family CLD04_19870 PF01098 Cell cycle protein CLD04_19875 PF17368 Spore morphogenesis and germination YwcE CLD04_19880 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CLD04_19885 PF00510 Cytochrome c oxidase subunit III CLD04_19890 PF00115 Cytochrome C and Quinol oxidase polypeptide I CLD04_19895 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CLD04_19895 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CLD04_19900 PF04226 Transglycosylase associated protein CLD04_19905 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CLD04_19905 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CLD04_19910 PF10509 Galactokinase galactose-binding signature CLD04_19910 PF08544 GHMP kinases C terminal CLD04_19910 PF00288 GHMP kinases N terminal domain CLD04_19915 PF04138 GtrA-like protein CLD04_19920 PF00440 Bacterial regulatory proteins, tetR family CLD04_19925 PF08671 Anti-repressor SinI CLD04_19930 PF04341 Protein of unknown function, DUF485 CLD04_19935 PF00474 Sodium:solute symporter family CLD04_19940 PF01323 DSBA-like thioredoxin domain CLD04_19945 PF04261 Dyp-type peroxidase family CLD04_19945 PF10518 TAT (twin-arginine translocation) pathway signal sequence CLD04_19950 PF09375 Imelysin CLD04_19955 PF03239 Iron permease FTR1 family CLD04_19965 PF02581 Thiamine monophosphate synthase CLD04_19970 PF02110 Hydroxyethylthiazole kinase family CLD04_19975 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLD04_19975 PF03466 LysR substrate binding domain CLD04_19980 PF03788 LrgA family CLD04_19985 PF04172 LrgB-like family CLD04_19990 PF12832 MFS_1 like family CLD04_19995 PF09962 Uncharacterized conserved protein (DUF2196) CLD04_20000 PF10672 S-adenosylmethionine-dependent methyltransferase CLD04_20000 PF17785 PUA-like domain CLD04_20005 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLD04_20010 PF02378 Phosphotransferase system, EIIC CLD04_20015 PF00082 Subtilase family CLD04_20020 PF00367 phosphotransferase system, EIIB CLD04_20020 PF02378 Phosphotransferase system, EIIC CLD04_20025 PF03123 CAT RNA binding domain CLD04_20025 PF00874 PRD domain CLD04_20030 PF01501 Glycosyl transferase family 8 CLD04_20035 PF09529 Integral membrane protein (intg_mem_TP0381) CLD04_20040 PF01047 MarR family CLD04_20050 PF02225 PA domain CLD04_20050 PF04389 Peptidase family M28 CLD04_20065 PF07690 Major Facilitator Superfamily CLD04_20070 PF04607 Region found in RelA / SpoT proteins CLD04_20080 PF13333 Integrase core domain CLD04_20080 PF00665 Integrase core domain CLD04_20085 PF01040 UbiA prenyltransferase family CLD04_20095 PF12459 D-Ala-teichoic acid biosynthesis protein CLD04_20100 PF13193 AMP-binding enzyme C-terminal domain CLD04_20100 PF00501 AMP-binding enzyme CLD04_20105 PF03062 MBOAT, membrane-bound O-acyltransferase family CLD04_20110 PF00550 Phosphopantetheine attachment site CLD04_20115 PF04914 DltD protein CLD04_20120 PF00106 short chain dehydrogenase CLD04_20125 PF01063 Amino-transferase class IV CLD04_20130 PF11975 Family 4 glycosyl hydrolase C-terminal domain CLD04_20130 PF02056 Family 4 glycosyl hydrolase CLD04_20135 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CLD04_20140 PF02378 Phosphotransferase system, EIIC CLD04_20145 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CLD04_20150 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CLD04_20150 PF08279 HTH domain CLD04_20150 PF05043 Mga helix-turn-helix domain CLD04_20150 PF00874 PRD domain CLD04_20160 PF02245 Methylpurine-DNA glycosylase (MPG) CLD04_20165 PF00199 Catalase CLD04_20165 PF06628 Catalase-related immune-responsive CLD04_20170 PF07690 Major Facilitator Superfamily CLD04_20180 PF13732 Domain of unknown function (DUF4162) CLD04_20180 PF00005 ABC transporter CLD04_20185 PF13396 Phospholipase_D-nuclease N-terminal CLD04_20195 PF17280 Family of unknown function (DUF5345) CLD04_20200 PF04542 Sigma-70 region 2 CLD04_20200 PF08281 Sigma-70, region 4 CLD04_20205 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin CLD04_20210 PF01256 Carbohydrate kinase CLD04_20215 PF00005 ABC transporter CLD04_20215 PF00664 ABC transporter transmembrane region CLD04_20220 PF00005 ABC transporter CLD04_20220 PF00664 ABC transporter transmembrane region CLD04_20225 PF02322 Cytochrome bd terminal oxidase subunit II CLD04_20230 PF01654 Cytochrome bd terminal oxidase subunit I CLD04_20235 PF03390 2-hydroxycarboxylate transporter family CLD04_20240 PF01435 Peptidase family M48 CLD04_20250 PF01522 Polysaccharide deacetylase CLD04_20255 PF17912 MalK OB fold domain CLD04_20255 PF03459 TOBE domain CLD04_20255 PF00005 ABC transporter CLD04_20260 PF13556 PucR C-terminal helix-turn-helix domain CLD04_20265 PF00171 Aldehyde dehydrogenase family CLD04_20270 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CLD04_20270 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CLD04_20275 PF11611 Domain of unknown function (DUF4352) CLD04_20280 PF16363 GDP-mannose 4,6 dehydratase CLD04_20290 PF07730 Histidine kinase CLD04_20295 PF00196 Bacterial regulatory proteins, luxR family CLD04_20295 PF00072 Response regulator receiver domain CLD04_20300 PF07687 Peptidase dimerisation domain CLD04_20300 PF01546 Peptidase family M20/M25/M40 CLD04_20310 PF04525 LURP-one-related CLD04_20315 PF01717 Cobalamin-independent synthase, Catalytic domain CLD04_20320 PF01717 Cobalamin-independent synthase, Catalytic domain CLD04_20330 PF01144 Coenzyme A transferase CLD04_20335 PF01144 Coenzyme A transferase CLD04_20345 PF08241 Methyltransferase domain CLD04_20355 PF13091 PLD-like domain CLD04_20355 PF13396 Phospholipase_D-nuclease N-terminal CLD04_20365 PF04239 Protein of unknown function (DUF421) CLD04_20375 PF03862 SpoVAC/SpoVAEB sporulation membrane protein CLD04_20380 PF07451 Stage V sporulation protein AD (SpoVAD) CLD04_20385 PF03862 SpoVAC/SpoVAEB sporulation membrane protein CLD04_20440 PF05036 Sporulation related domain CLD04_20440 PF01520 N-acetylmuramoyl-L-alanine amidase CLD04_20450 PF13700 Domain of unknown function (DUF4158) CLD04_20450 PF01526 Tn3 transposase DDE domain CLD04_20455 PF01526 Tn3 transposase DDE domain CLD04_20455 PF13700 Domain of unknown function (DUF4158) CLD04_20460 PF07662 Na+ dependent nucleoside transporter C-terminus CLD04_20460 PF01773 Na+ dependent nucleoside transporter N-terminus CLD04_20475 PF00199 Catalase CLD04_20475 PF06628 Catalase-related immune-responsive CLD04_20475 PF18011 C-terminal domain found in long catalases CLD04_20480 PF03600 Citrate transporter CLD04_20505 PF11700 Vacuole effluxer Atg22 like CLD04_20510 PF00271 Helicase conserved C-terminal domain CLD04_20510 PF00270 DEAD/DEAH box helicase CLD04_20510 PF03880 DbpA RNA binding domain CLD04_20515 PF13472 GDSL-like Lipase/Acylhydrolase family CLD04_20535 PF14176 YxiJ-like protein CLD04_20540 PF10898 Protein of unknown function (DUF2716) CLD04_20570 PF05593 RHS Repeat CLD04_20575 PF00892 EamA-like transporter family CLD04_20580 PF00582 Universal stress protein family CLD04_20585 PF00232 Glycosyl hydrolase family 1 CLD04_20590 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CLD04_20590 PF00367 phosphotransferase system, EIIB CLD04_20590 PF02378 Phosphotransferase system, EIIC CLD04_20600 PF14449 Pre-toxin TG CLD04_20600 PF04740 LXG domain of WXG superfamily CLD04_20610 PF16888 Domain of unknown function (DUF5082) CLD04_20620 PF00145 C-5 cytosine-specific DNA methylase CLD04_20630 PF16369 C-terminal lipocalin-like domain CLD04_20630 PF04616 Glycosyl hydrolases family 43 CLD04_20640 PF01979 Amidohydrolase family CLD04_20645 PF00491 Arginase family CLD04_20650 PF00324 Amino acid permease CLD04_20655 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CLD04_20655 PF00591 Glycosyl transferase family, a/b domain CLD04_20655 PF02885 Glycosyl transferase family, helical bundle domain CLD04_20660 PF07662 Na+ dependent nucleoside transporter C-terminus CLD04_20660 PF01773 Na+ dependent nucleoside transporter N-terminus CLD04_20665 PF01791 DeoC/LacD family aldolase CLD04_20670 PF04198 Putative sugar-binding domain CLD04_20680 PF04346 Ethanolamine utilisation protein, EutH CLD04_20685 PF03972 MmgE/PrpD family CLD04_20695 PF00005 ABC transporter CLD04_20700 PF00528 Binding-protein-dependent transport system inner membrane component CLD04_20705 PF00497 Bacterial extracellular solute-binding proteins, family 3 CLD04_20720 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family CLD04_20735 PF11631 Protein of unknown function (DUF3255) CLD04_20755 PF01497 Periplasmic binding protein CLD04_20760 PF06486 Protein of unknown function (DUF1093) CLD04_20765 PF02687 FtsX-like permease family CLD04_20770 PF00005 ABC transporter CLD04_20775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLD04_20780 PF00486 Transcriptional regulatory protein, C terminal CLD04_20780 PF00072 Response regulator receiver domain CLD04_20785 PF01116 Fructose-bisphosphate aldolase class-II CLD04_20790 PF01261 Xylose isomerase-like TIM barrel CLD04_20795 PF01261 Xylose isomerase-like TIM barrel CLD04_20800 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CLD04_20800 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CLD04_20805 PF07690 Major Facilitator Superfamily CLD04_20810 PF01261 Xylose isomerase-like TIM barrel CLD04_20815 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CLD04_20815 PF00205 Thiamine pyrophosphate enzyme, central domain CLD04_20815 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CLD04_20820 PF00294 pfkB family carbohydrate kinase CLD04_20825 PF04962 KduI/IolB family CLD04_20830 PF00171 Aldehyde dehydrogenase family CLD04_20835 PF00455 DeoR C terminal sensor domain CLD04_20835 PF08220 DeoR-like helix-turn-helix domain CLD04_20840 PF00248 Aldo/keto reductase family CLD04_20850 PF10850 Protein of unknown function (DUF2653) CLD04_20855 PF00083 Sugar (and other) transporter CLD04_20860 PF00183 Hsp90 protein CLD04_20875 PF00440 Bacterial regulatory proteins, tetR family CLD04_20880 PF00171 Aldehyde dehydrogenase family CLD04_20885 PF06271 RDD family CLD04_20890 PF13570 PQQ-like domain CLD04_20890 PF01011 PQQ enzyme repeat CLD04_20890 PF13360 PQQ-like domain CLD04_20895 PF17369 Family of unknown function (DUF5391) CLD04_20900 PF06271 RDD family CLD04_20910 PF07883 Cupin domain CLD04_20915 PF00440 Bacterial regulatory proteins, tetR family CLD04_20920 PF00106 short chain dehydrogenase CLD04_20925 PF01047 MarR family CLD04_20930 PF03788 LrgA family CLD04_20935 PF04172 LrgB-like family CLD04_20945 PF04230 Polysaccharide pyruvyl transferase CLD04_20950 PF02595 Glycerate kinase family CLD04_20955 PF00392 Bacterial regulatory proteins, gntR family CLD04_20955 PF07729 FCD domain CLD04_20960 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CLD04_20960 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CLD04_20965 PF02447 GntP family permease CLD04_20970 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CLD04_20970 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CLD04_20975 PF00578 AhpC/TSA family CLD04_20980 PF13192 Thioredoxin domain CLD04_20980 PF07992 Pyridine nucleotide-disulphide oxidoreductase CLD04_20985 PF00232 Glycosyl hydrolase family 1 CLD04_21000 PF07702 UTRA domain CLD04_21000 PF00392 Bacterial regulatory proteins, gntR family CLD04_21015 PF00005 ABC transporter CLD04_21020 PF06874 Firmicute fructose-1,6-bisphosphatase CLD04_21035 PF02590 Predicted SPOUT methyltransferase CLD04_21040 PF14116 YyzF-like protein CLD04_21050 PF00107 Zinc-binding dehydrogenase CLD04_21050 PF08240 Alcohol dehydrogenase GroES-like domain CLD04_21060 PF10852 Protein of unknown function (DUF2651) CLD04_21075 PF00583 Acetyltransferase (GNAT) family CLD04_21080 PF18801 response regulator aspartate phosphatase H, N terminal CLD04_21090 PF00491 Arginase family CLD04_21095 PF00324 Amino acid permease CLD04_21100 PF00202 Aminotransferase class-III CLD04_21105 PF02954 Bacterial regulatory protein, Fis family CLD04_21105 PF00158 Sigma-54 interaction domain CLD04_21105 PF13426 PAS domain CLD04_21110 PF00989 PAS fold CLD04_21110 PF00512 His Kinase A (phospho-acceptor) domain CLD04_21110 PF16736 Single Cache-like CLD04_21110 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLD04_21115 PF00072 Response regulator receiver domain CLD04_21115 PF00486 Transcriptional regulatory protein, C terminal CLD04_21130 PF13180 PDZ domain CLD04_21135 PF00753 Metallo-beta-lactamase superfamily CLD04_21140 PF09648 YycH protein CLD04_21145 PF07435 YycH protein CLD04_21150 PF00512 His Kinase A (phospho-acceptor) domain CLD04_21150 PF00672 HAMP domain CLD04_21150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CLD04_21150 PF13426 PAS domain CLD04_21155 PF00072 Response regulator receiver domain CLD04_21155 PF00486 Transcriptional regulatory protein, C terminal CLD04_21180 PF00709 Adenylosuccinate synthetase CLD04_21185 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLD04_21190 PF00772 DnaB-like helicase N terminal domain CLD04_21190 PF03796 DnaB-like helicase C terminal domain CLD04_21195 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) CLD04_21205 PF14174 YycC-like protein CLD04_21210 PF07690 Major Facilitator Superfamily CLD04_21215 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase CLD04_21220 PF03948 Ribosomal protein L9, C-terminal domain CLD04_21220 PF01281 Ribosomal protein L9, N-terminal domain CLD04_21225 PF01368 DHH family CLD04_21225 PF02272 DHHA1 domain CLD04_21230 PF09991 Predicted membrane protein (DUF2232) CLD04_21240 PF07875 Coat F domain CLD04_21245 PF01638 HxlR-like helix-turn-helix CLD04_21250 PF02833 DHHA2 domain CLD04_21250 PF01368 DHH family CLD04_21265 PF07690 Major Facilitator Superfamily CLD04_21285 PF13474 SnoaL-like domain CLD04_21290 PF00805 Pentapeptide repeats (8 copies) CLD04_21295 PF07690 Major Facilitator Superfamily CLD04_21300 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CLD04_21300 PF03466 LysR substrate binding domain CLD04_21305 PF13673 Acetyltransferase (GNAT) domain CLD04_21315 PF00753 Metallo-beta-lactamase superfamily CLD04_21320 PF01047 MarR family CLD04_21325 PF13673 Acetyltransferase (GNAT) domain CLD04_21335 PF00583 Acetyltransferase (GNAT) family CLD04_21340 PF04237 YjbR CLD04_21345 PF01872 RibD C-terminal domain CLD04_21355 PF01451 Low molecular weight phosphotyrosine protein phosphatase CLD04_21360 PF01758 Sodium Bile acid symporter family CLD04_21365 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLD04_21370 PF01022 Bacterial regulatory protein, arsR family CLD04_21390 PF03190 Protein of unknown function, DUF255 CLD04_21395 PF02517 CPBP intramembrane metalloprotease CLD04_21400 PF00083 Sugar (and other) transporter CLD04_21405 PF12464 Maltose acetyltransferase CLD04_21405 PF14602 Hexapeptide repeat of succinyl-transferase CLD04_21410 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CLD04_21415 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CLD04_21415 PF00356 Bacterial regulatory proteins, lacI family CLD04_21420 PF03372 Endonuclease/Exonuclease/phosphatase family CLD04_21425 PF01084 Ribosomal protein S18 CLD04_21430 PF00436 Single-strand binding protein family CLD04_21435 PF01250 Ribosomal protein S6 CLD04_21440 PF06071 Protein of unknown function (DUF933) CLD04_21440 PF01926 50S ribosome-binding GTPase CLD04_21445 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CLD04_21445 PF00384 Molybdopterin oxidoreductase CLD04_21445 PF01568 Molydopterin dinucleotide binding domain CLD04_21450 PF06107 Bacterial protein of unknown function (DUF951) CLD04_21460 PF06866 Protein of unknown function (DUF1256) CLD04_21465 PF17762 HTH domain found in ParB protein CLD04_21465 PF02195 ParB-like nuclease domain CLD04_21470 PF13614 AAA domain CLD04_21475 PF06713 Bacterial PH domain CLD04_21480 PF17762 HTH domain found in ParB protein CLD04_21480 PF02195 ParB-like nuclease domain CLD04_21485 PF02527 rRNA small subunit methyltransferase G CLD04_21490 PF13932 GidA associated domain CLD04_21490 PF01134 Glucose inhibited division protein A CLD04_21495 PF12631 MnmE helical domain CLD04_21495 PF01926 50S ribosome-binding GTPase CLD04_21495 PF10396 GTP-binding protein TrmE N-terminus CLD04_21500 PF01424 R3H domain CLD04_21500 PF14804 Jag N-terminus CLD04_21505 PF02096 60Kd inner membrane protein CLD04_21510 PF00825 Ribonuclease P CLD04_21515 PF00468 Ribosomal protein L34