BKN48_00085 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BKN48_00085 SM00245 tail specific protease BKN48_00120 SM00014 Acid phosphatase homologues BKN48_00170 SM00882 Coenzyme A transferase BKN48_00175 SM00882 Coenzyme A transferase BKN48_00240 SM00347 helix_turn_helix multiple antibiotic resistance protein BKN48_00285 SM00382 ATPases associated with a variety of cellular activities BKN48_00330 SM00567 E-Z type HEAT repeats BKN48_00330 SM00932 Scaffold protein Nfu/NifU N terminal BKN48_00335 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BKN48_00355 SM00357 Cold shock protein domain BKN48_00395 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BKN48_00395 SM00475 5'-3' exonuclease BKN48_00460 SM00354 helix_turn _helix lactose operon repressor BKN48_00475 SM00491 BKN48_00475 BKN48_00485 SM00981 BKN48_00485 BKN48_00515 SM00487 DEAD-like helicases superfamily BKN48_00515 SM00490 helicase superfamily c-terminal domain BKN48_00575 SM00478 endonuclease III BKN48_00575 SM00525 BKN48_00575 BKN48_00605 SM00479 BKN48_00605 BKN48_00605 SM00487 DEAD-like helicases superfamily BKN48_00605 SM00491 BKN48_00605 BKN48_00645 SM00851 MGS-like domain BKN48_00695 SM00914 BKN48_00695 BKN48_00700 SM00028 Tetratricopeptide repeats BKN48_00765 SM00138 Methyltransferase, chemotaxis proteins BKN48_00775 SM00562 BKN48_00775 BKN48_00805 SM00411 bacterial (prokaryotic) histone like domain BKN48_00855 SM01240 BKN48_00855 BKN48_00860 SM00316 Ribosomal protein S1-like RNA-binding domain BKN48_00900 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BKN48_00920 SM00257 Lysin motif BKN48_00930 SM00487 DEAD-like helicases superfamily BKN48_00930 SM00490 helicase superfamily c-terminal domain BKN48_00970 SM00091 PAS domain BKN48_00970 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BKN48_00970 SM00387 Histidine kinase-like ATPases BKN48_00970 SM00388 His Kinase A (phosphoacceptor) domain BKN48_00975 SM00448 cheY-homologous receiver domain BKN48_00975 SM00862 Transcriptional regulatory protein, C terminal BKN48_00995 SM00363 S4 RNA-binding domain BKN48_01010 SM00936 Penicillin-binding protein 5, C-terminal domain BKN48_01135 SM00387 Histidine kinase-like ATPases BKN48_01145 SM00936 Penicillin-binding protein 5, C-terminal domain BKN48_01185 SM00919 Malic enzyme, NAD binding domain BKN48_01185 SM01274 BKN48_01185 BKN48_01200 SM00870 BKN48_01200 BKN48_01205 SM00530 Helix-turn-helix XRE-family like proteins BKN48_01310 SM00849 Metallo-beta-lactamase superfamily BKN48_01340 SM00849 Metallo-beta-lactamase superfamily BKN48_01350 SM01350 BKN48_01350 BKN48_01405 SM00382 ATPases associated with a variety of cellular activities BKN48_01415 SM00062 Bacterial periplasmic substrate-binding proteins BKN48_01415 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BKN48_01425 SM00046 Diacylglycerol kinase catalytic domain (presumed) BKN48_01435 SM00422 helix_turn_helix, mercury resistance BKN48_01445 SM00861 Transketolase, pyrimidine binding domain BKN48_01465 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BKN48_01475 SM00091 PAS domain BKN48_01475 SM00382 ATPases associated with a variety of cellular activities BKN48_01520 SM00646 BKN48_01520 BKN48_01545 SM00448 cheY-homologous receiver domain BKN48_01555 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BKN48_01570 SM00363 S4 RNA-binding domain BKN48_01575 SM00861 Transketolase, pyrimidine binding domain BKN48_01610 SM00878 Biotin carboxylase C-terminal domain BKN48_01655 SM00382 ATPases associated with a variety of cellular activities BKN48_01665 SM00841 Elongation factor P, C-terminal BKN48_01665 SM01185 BKN48_01665 BKN48_01700 SM00529 Helix-turn-helix diphteria tox regulatory element BKN48_01710 SM00450 Rhodanese Homology Domain BKN48_01730 SM00487 DEAD-like helicases superfamily BKN48_01730 SM00490 helicase superfamily c-terminal domain BKN48_01745 SM00530 Helix-turn-helix XRE-family like proteins BKN48_01805 SM00382 ATPases associated with a variety of cellular activities BKN48_01820 SM01091 Transporter associated domain BKN48_01845 SM00849 Metallo-beta-lactamase superfamily BKN48_01865 SM00631 BKN48_01865 BKN48_01885 SM00028 Tetratricopeptide repeats BKN48_01925 SM00382 ATPases associated with a variety of cellular activities BKN48_01930 SM00382 ATPases associated with a variety of cellular activities BKN48_01975 SM00257 Lysin motif BKN48_02010 SM00518 AP endonuclease family 2 BKN48_02015 SM00487 DEAD-like helicases superfamily BKN48_02015 SM00490 helicase superfamily c-terminal domain BKN48_02050 SM00400 zinc finger BKN48_02050 SM00493 BKN48_02050 BKN48_02065 SM00116 Domain in cystathionine beta-synthase and other proteins. BKN48_02110 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BKN48_02165 SM00729 Elongator protein 3, MiaB family, Radical SAM BKN48_02180 SM00271 DnaJ molecular chaperone homology domain BKN48_02200 SM00729 Elongator protein 3, MiaB family, Radical SAM BKN48_02205 SM00838 Elongation factor G C-terminus BKN48_02240 SM00849 Metallo-beta-lactamase superfamily BKN48_02250 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BKN48_02270 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BKN48_02280 SM01103 BKN48_02280 BKN48_02315 SM00644 BKN48_02315 BKN48_02325 SM01350 BKN48_02325 BKN48_02360 SM00388 His Kinase A (phosphoacceptor) domain BKN48_02365 SM00448 cheY-homologous receiver domain BKN48_02365 SM00862 Transcriptional regulatory protein, C terminal BKN48_02405 SM00450 Rhodanese Homology Domain BKN48_02405 SM00849 Metallo-beta-lactamase superfamily BKN48_02415 SM00450 Rhodanese Homology Domain BKN48_02445 SM00422 helix_turn_helix, mercury resistance BKN48_02460 SM01091 Transporter associated domain BKN48_02510 SM00344 helix_turn_helix ASNC type BKN48_02570 SM00345 helix_turn_helix gluconate operon transcriptional repressor BKN48_02570 SM00895 BKN48_02570 BKN48_02580 SM00822 BKN48_02580 BKN48_02585 SM00861 Transketolase, pyrimidine binding domain BKN48_02600 SM00347 helix_turn_helix multiple antibiotic resistance protein BKN48_02650 SM00287 Bacterial SH3 domain homologues BKN48_02690 SM00422 helix_turn_helix, mercury resistance BKN48_02700 SM00829 Enoylreductase BKN48_02710 SM00640 Glycosyl hydrolases family 32 BKN48_02735 SM00382 ATPases associated with a variety of cellular activities BKN48_02810 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BKN48_02810 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BKN48_02840 SM00650 Ribosomal RNA adenine dimethylases BKN48_02895 SM00732 Likely ribonuclease with RNase H fold. BKN48_02905 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BKN48_02915 SM00382 ATPases associated with a variety of cellular activities BKN48_02920 SM00062 Bacterial periplasmic substrate-binding proteins BKN48_02920 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BKN48_02950 SM00382 ATPases associated with a variety of cellular activities BKN48_02955 SM00028 Tetratricopeptide repeats BKN48_02975 SM00382 ATPases associated with a variety of cellular activities BKN48_03005 SM00287 Bacterial SH3 domain homologues BKN48_03005 SM00646 BKN48_03005 BKN48_03015 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BKN48_03015 SM00954 Region found in RelA / SpoT proteins BKN48_03065 SM01323 BKN48_03065 BKN48_03085 SM00382 ATPases associated with a variety of cellular activities BKN48_03090 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BKN48_03145 SM00257 Lysin motif BKN48_03190 SM01317 BKN48_03190 BKN48_03290 SM00257 Lysin motif BKN48_03300 SM01004 Delta-aminolevulinic acid dehydratase BKN48_03335 SM00382 ATPases associated with a variety of cellular activities BKN48_03335 SM00464 Found in ATP-dependent protease La (LON) BKN48_03340 SM00382 ATPases associated with a variety of cellular activities BKN48_03345 SM00382 ATPases associated with a variety of cellular activities BKN48_03345 SM00994 ClpX C4-type zinc finger BKN48_03345 SM01086 C-terminal, D2-small domain, of ClpB protein BKN48_03370 SM01329 BKN48_03370 BKN48_03375 SM00917 LeuA allosteric (dimerisation) domain BKN48_03435 SM00909 Sporulation and spore germination BKN48_03445 SM00347 helix_turn_helix multiple antibiotic resistance protein BKN48_03450 SM00421 helix_turn_helix, Lux Regulon BKN48_03490 SM00465 GIY-YIG type nucleases (URI domain) BKN48_03500 SM00813 Alpha-L-arabinofuranosidase C-terminus BKN48_03505 SM00893 Electron transfer flavoprotein domain BKN48_03510 SM00893 Electron transfer flavoprotein domain BKN48_03535 SM00463 Small MutS-related domain BKN48_03535 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BKN48_03535 SM00534 ATPase domain of DNA mismatch repair MUTS family BKN48_03540 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BKN48_03540 SM00481 DNA polymerase alpha chain like domain BKN48_03540 SM00483 DNA polymerase X family BKN48_03560 SM00873 B3/4 domain BKN48_03560 SM00874 tRNA synthetase B5 domain BKN48_03560 SM00896 Ferredoxin-fold anticodon binding domain BKN48_03575 SM00967 RNA 2'-O ribose methyltransferase substrate binding BKN48_03610 SM00813 Alpha-L-arabinofuranosidase C-terminus BKN48_03640 SM01007 Class II Aldolase and Adducin N-terminal domain BKN48_03705 SM00448 cheY-homologous receiver domain BKN48_03705 SM00850 LytTr DNA-binding domain BKN48_03710 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BKN48_03710 SM00387 Histidine kinase-like ATPases BKN48_03720 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BKN48_03735 SM00382 ATPases associated with a variety of cellular activities BKN48_03755 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BKN48_03790 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BKN48_03790 SM01232 BKN48_03790 BKN48_03795 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BKN48_03795 SM00474 3'-5' exonuclease BKN48_03795 SM00475 5'-3' exonuclease BKN48_03795 SM00482 DNA polymerase A domain BKN48_03800 SM00091 PAS domain BKN48_03800 SM00387 Histidine kinase-like ATPases BKN48_03800 SM00388 His Kinase A (phosphoacceptor) domain BKN48_03805 SM00448 cheY-homologous receiver domain BKN48_03805 SM00862 Transcriptional regulatory protein, C terminal BKN48_03815 SM01329 BKN48_03815 BKN48_03860 SM00919 Malic enzyme, NAD binding domain BKN48_03860 SM01274 BKN48_03860 BKN48_03865 SM00481 DNA polymerase alpha chain like domain BKN48_03895 SM00116 Domain in cystathionine beta-synthase and other proteins. BKN48_03900 SM00849 Metallo-beta-lactamase superfamily BKN48_03925 SM00852 Probable molybdopterin binding domain BKN48_03985 SM00981 BKN48_03985 BKN48_04015 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BKN48_04020 SM00267 diguanylate cyclase BKN48_04025 SM00363 S4 RNA-binding domain BKN48_04025 SM01390 BKN48_04025 BKN48_04035 SM00363 S4 RNA-binding domain BKN48_04050 SM00116 Domain in cystathionine beta-synthase and other proteins. BKN48_04070 SM00354 helix_turn _helix lactose operon repressor BKN48_04075 SM00830 Chorismate mutase type II BKN48_04100 SM00382 ATPases associated with a variety of cellular activities BKN48_04100 SM00843 BKN48_04100 BKN48_04135 SM00919 Malic enzyme, NAD binding domain BKN48_04135 SM01274 BKN48_04135 BKN48_04140 SM00849 Metallo-beta-lactamase superfamily BKN48_04160 SM00642 Alpha-amylase domain BKN48_04165 SM00046 Diacylglycerol kinase catalytic domain (presumed) BKN48_04200 SM00382 ATPases associated with a variety of cellular activities BKN48_04205 SM00420 helix_turn_helix, Deoxyribose operon repressor BKN48_04210 SM00363 S4 RNA-binding domain BKN48_04260 SM00342 helix_turn_helix, arabinose operon control protein BKN48_04285 SM00729 Elongator protein 3, MiaB family, Radical SAM BKN48_04285 SM00876 Biotin and Thiamin Synthesis associated domain BKN48_04315 SM00354 helix_turn _helix lactose operon repressor BKN48_04340 SM00450 Rhodanese Homology Domain BKN48_04355 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BKN48_04355 SM00091 PAS domain BKN48_04375 SM00382 ATPases associated with a variety of cellular activities BKN48_04380 SM00387 Histidine kinase-like ATPases BKN48_04385 SM00448 cheY-homologous receiver domain BKN48_04385 SM00862 Transcriptional regulatory protein, C terminal BKN48_04395 SM00382 ATPases associated with a variety of cellular activities BKN48_04410 SM00382 ATPases associated with a variety of cellular activities BKN48_04415 SM00345 helix_turn_helix gluconate operon transcriptional repressor BKN48_04430 SM00729 Elongator protein 3, MiaB family, Radical SAM BKN48_04490 SM00382 ATPases associated with a variety of cellular activities BKN48_04530 SM01234 BKN48_04530 BKN48_04535 SM00947 Carbonic anhydrase BKN48_04570 SM00382 ATPases associated with a variety of cellular activities BKN48_04580 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BKN48_04620 SM00984 UDP binding domain BKN48_04680 SM00642 Alpha-amylase domain BKN48_04820 SM00244 prohibitin homologues BKN48_04875 SM00047 Lysozyme subfamily 2 BKN48_04925 SM00420 helix_turn_helix, Deoxyribose operon repressor BKN48_04925 SM01134 BKN48_04925 BKN48_04930 SM01007 Class II Aldolase and Adducin N-terminal domain BKN48_04935 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BKN48_04935 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BKN48_04935 SM00319 Homologues of the ligand binding domain of Tar BKN48_04940 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BKN48_04940 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BKN48_04940 SM00319 Homologues of the ligand binding domain of Tar BKN48_04945 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BKN48_04945 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BKN48_04945 SM00319 Homologues of the ligand binding domain of Tar BKN48_04950 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BKN48_04950 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BKN48_04950 SM00319 Homologues of the ligand binding domain of Tar BKN48_04970 SM00642 Alpha-amylase domain BKN48_04975 SM01091 Transporter associated domain BKN48_05030 SM00316 Ribosomal protein S1-like RNA-binding domain BKN48_05040 SM00344 helix_turn_helix ASNC type BKN48_05060 SM00387 Histidine kinase-like ATPases BKN48_05060 SM00388 His Kinase A (phosphoacceptor) domain BKN48_05065 SM01298 BKN48_05065 BKN48_05070 SM00479 BKN48_05070 BKN48_05100 SM00091 PAS domain BKN48_05100 SM00387 Histidine kinase-like ATPases BKN48_05105 SM00448 cheY-homologous receiver domain BKN48_05115 SM00382 ATPases associated with a variety of cellular activities BKN48_05180 SM00421 helix_turn_helix, Lux Regulon BKN48_05180 SM00448 cheY-homologous receiver domain BKN48_05185 SM00387 Histidine kinase-like ATPases BKN48_05210 SM00052 Putative diguanylate phosphodiesterase BKN48_05255 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BKN48_05300 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BKN48_05300 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BKN48_05310 SM00923 MbtH-like protein BKN48_05315 SM00823 Phosphopantetheine attachment site BKN48_05315 SM00824 Thioesterase BKN48_05400 SM01240 BKN48_05400 BKN48_05500 SM00729 Elongator protein 3, MiaB family, Radical SAM BKN48_05580 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BKN48_05620 SM00382 ATPases associated with a variety of cellular activities BKN48_05625 SM00345 helix_turn_helix gluconate operon transcriptional repressor BKN48_05625 SM00866 BKN48_05625 BKN48_05655 SM00465 GIY-YIG type nucleases (URI domain) BKN48_05680 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BKN48_05705 SM00382 ATPases associated with a variety of cellular activities BKN48_05730 SM00382 ATPases associated with a variety of cellular activities BKN48_05730 SM00930 BKN48_05730 BKN48_05745 SM00493 BKN48_05745 BKN48_05800 SM00347 helix_turn_helix multiple antibiotic resistance protein BKN48_05830 SM00382 ATPases associated with a variety of cellular activities BKN48_05855 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BKN48_05860 SM00448 cheY-homologous receiver domain BKN48_05860 SM00862 Transcriptional regulatory protein, C terminal BKN48_05865 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BKN48_05865 SM00387 Histidine kinase-like ATPases BKN48_05865 SM00388 His Kinase A (phosphoacceptor) domain BKN48_05905 SM00421 helix_turn_helix, Lux Regulon BKN48_05905 SM00448 cheY-homologous receiver domain BKN48_05910 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BKN48_05910 SM00387 Histidine kinase-like ATPases BKN48_05945 SM00382 ATPases associated with a variety of cellular activities BKN48_05970 SM00387 Histidine kinase-like ATPases BKN48_05970 SM00388 His Kinase A (phosphoacceptor) domain BKN48_05975 SM00448 cheY-homologous receiver domain BKN48_05975 SM00862 Transcriptional regulatory protein, C terminal BKN48_05995 SM00835 Cupin BKN48_06010 SM00382 ATPases associated with a variety of cellular activities BKN48_06020 SM00382 ATPases associated with a variety of cellular activities BKN48_06200 SM00316 Ribosomal protein S1-like RNA-binding domain BKN48_06200 SM00357 Cold shock protein domain BKN48_06200 SM00955 BKN48_06200 BKN48_06220 SM00530 Helix-turn-helix XRE-family like proteins BKN48_06225 SM00530 Helix-turn-helix XRE-family like proteins BKN48_06230 SM00530 Helix-turn-helix XRE-family like proteins BKN48_06240 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BKN48_06240 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BKN48_06260 SM00116 Domain in cystathionine beta-synthase and other proteins. BKN48_06260 SM00382 ATPases associated with a variety of cellular activities BKN48_06285 SM00116 Domain in cystathionine beta-synthase and other proteins. BKN48_06285 SM00382 ATPases associated with a variety of cellular activities BKN48_06320 SM01192 BKN48_06320 BKN48_06320 SM01193 BKN48_06320 BKN48_06345 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BKN48_06360 SM00345 helix_turn_helix gluconate operon transcriptional repressor BKN48_06385 SM00636 BKN48_06385 BKN48_06405 SM00421 helix_turn_helix, Lux Regulon BKN48_06405 SM00448 cheY-homologous receiver domain BKN48_06420 SM00382 ATPases associated with a variety of cellular activities BKN48_06430 SM00331 Sigma factor PP2C-like phosphatases BKN48_06460 SM00354 helix_turn _helix lactose operon repressor BKN48_06465 SM00345 helix_turn_helix gluconate operon transcriptional repressor BKN48_06465 SM00895 BKN48_06465 BKN48_06560 SM00530 Helix-turn-helix XRE-family like proteins BKN48_06600 SM00640 Glycosyl hydrolases family 32 BKN48_06645 SM00642 Alpha-amylase domain BKN48_06675 SM00642 Alpha-amylase domain BKN48_06680 SM00354 helix_turn _helix lactose operon repressor BKN48_06700 SM00947 Carbonic anhydrase BKN48_06715 SM00382 ATPases associated with a variety of cellular activities BKN48_06720 SM00387 Histidine kinase-like ATPases BKN48_06725 SM00448 cheY-homologous receiver domain BKN48_06725 SM00862 Transcriptional regulatory protein, C terminal BKN48_06775 SM00028 Tetratricopeptide repeats BKN48_06780 SM00382 ATPases associated with a variety of cellular activities BKN48_06885 SM00345 helix_turn_helix gluconate operon transcriptional repressor BKN48_06885 SM00866 BKN48_06885 BKN48_06925 SM00382 ATPases associated with a variety of cellular activities BKN48_06930 SM00487 DEAD-like helicases superfamily BKN48_06930 SM00490 helicase superfamily c-terminal domain BKN48_06955 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BKN48_06965 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BKN48_06965 SM00245 tail specific protease BKN48_06975 SM00382 ATPases associated with a variety of cellular activities BKN48_06990 SM00937 BKN48_06990 BKN48_06995 SM00957 SecA DEAD-like domain BKN48_06995 SM00958 SecA preprotein cross-linking domain BKN48_07085 SM00487 DEAD-like helicases superfamily BKN48_07085 SM00490 helicase superfamily c-terminal domain BKN48_07095 SM00421 helix_turn_helix, Lux Regulon BKN48_07095 SM00448 cheY-homologous receiver domain BKN48_07100 SM00387 Histidine kinase-like ATPases BKN48_07140 SM00984 UDP binding domain BKN48_07165 SM00646 BKN48_07165 BKN48_07210 SM00382 ATPases associated with a variety of cellular activities BKN48_07265 SM00047 Lysozyme subfamily 2 BKN48_07265 SM00287 Bacterial SH3 domain homologues BKN48_07320 SM00854 Bacterial capsule synthesis protein PGA_cap BKN48_07335 SM00354 helix_turn _helix lactose operon repressor BKN48_07350 SM00382 ATPases associated with a variety of cellular activities BKN48_07365 SM00287 Bacterial SH3 domain homologues BKN48_07420 SM00903 Flavin reductase like domain BKN48_07435 SM00344 helix_turn_helix ASNC type BKN48_07480 SM00984 UDP binding domain BKN48_07510 SM00487 DEAD-like helicases superfamily BKN48_07510 SM00490 helicase superfamily c-terminal domain BKN48_07520 SM00420 helix_turn_helix, Deoxyribose operon repressor BKN48_07520 SM01134 BKN48_07520 BKN48_07550 SM00448 cheY-homologous receiver domain BKN48_07550 SM00862 Transcriptional regulatory protein, C terminal BKN48_07555 SM00387 Histidine kinase-like ATPases BKN48_07555 SM00388 His Kinase A (phosphoacceptor) domain BKN48_07555 SM00448 cheY-homologous receiver domain BKN48_07570 SM00028 Tetratricopeptide repeats BKN48_07595 SM00347 helix_turn_helix multiple antibiotic resistance protein BKN48_07605 SM00710 Parallel beta-helix repeats BKN48_07605 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses BKN48_07635 SM00938 Nitrogen regulatory protein P-II BKN48_07640 SM00014 Acid phosphatase homologues BKN48_07675 SM00155 Phospholipase D. Active site motifs. BKN48_07680 SM00422 helix_turn_helix, mercury resistance BKN48_07735 SM00028 Tetratricopeptide repeats BKN48_07740 SM00729 Elongator protein 3, MiaB family, Radical SAM BKN48_07755 SM00327 von Willebrand factor (vWF) type A domain BKN48_07765 SM00327 von Willebrand factor (vWF) type A domain BKN48_07800 SM00382 ATPases associated with a variety of cellular activities BKN48_07865 SM00226 Low molecular weight phosphatase family BKN48_07905 SM00937 BKN48_07905 BKN48_07925 SM00919 Malic enzyme, NAD binding domain BKN48_07925 SM01274 BKN48_07925 BKN48_07940 SM00357 Cold shock protein domain BKN48_07940 SM00382 ATPases associated with a variety of cellular activities BKN48_07940 SM00959 Rho termination factor, N-terminal domain BKN48_07970 SM00448 cheY-homologous receiver domain BKN48_08000 SM00155 Phospholipase D. Active site motifs. BKN48_08020 SM00382 ATPases associated with a variety of cellular activities BKN48_08025 SM00155 Phospholipase D. Active site motifs. BKN48_08050 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BKN48_08065 SM00100 Cyclic nucleotide-monophosphate binding domain BKN48_08065 SM00419 helix_turn_helix, cAMP Regulatory protein BKN48_08075 SM00836 DALR anticodon binding domain BKN48_08075 SM01016 Arginyl tRNA synthetase N terminal dom BKN48_08090 SM00729 Elongator protein 3, MiaB family, Radical SAM BKN48_08140 SM00028 Tetratricopeptide repeats BKN48_08190 SM00347 helix_turn_helix multiple antibiotic resistance protein BKN48_08195 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BKN48_08220 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BKN48_08315 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BKN48_08355 SM00858 BKN48_08355 BKN48_08410 SM00986 Uracil DNA glycosylase superfamily BKN48_08410 SM00987 UreE urease accessory protein, C-terminal domain BKN48_08445 SM00640 Glycosyl hydrolases family 32 BKN48_08460 SM01061 CAT RNA binding domain BKN48_08610 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BKN48_08640 SM01061 CAT RNA binding domain BKN48_08655 SM00347 helix_turn_helix multiple antibiotic resistance protein BKN48_08660 SM00363 S4 RNA-binding domain BKN48_08670 SM00530 Helix-turn-helix XRE-family like proteins BKN48_08685 SM00954 Region found in RelA / SpoT proteins BKN48_08770 SM01060 BKN48_08770 BKN48_08785 SM00382 ATPases associated with a variety of cellular activities BKN48_08820 SM00382 ATPases associated with a variety of cellular activities BKN48_08830 SM00448 cheY-homologous receiver domain BKN48_08830 SM00850 LytTr DNA-binding domain BKN48_08835 SM00421 helix_turn_helix, Lux Regulon BKN48_08840 SM00382 ATPases associated with a variety of cellular activities BKN48_08855 SM00382 ATPases associated with a variety of cellular activities BKN48_08860 SM00382 ATPases associated with a variety of cellular activities BKN48_08905 SM00382 ATPases associated with a variety of cellular activities BKN48_08945 SM00421 helix_turn_helix, Lux Regulon BKN48_08945 SM00448 cheY-homologous receiver domain BKN48_08985 SM00882 Coenzyme A transferase BKN48_08990 SM00882 Coenzyme A transferase BKN48_09025 SM01060 BKN48_09025 BKN48_09040 SM01061 CAT RNA binding domain BKN48_09055 SM00487 DEAD-like helicases superfamily BKN48_09055 SM00490 helicase superfamily c-terminal domain BKN48_09195 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BKN48_09205 SM01133 BKN48_09205 BKN48_09235 SM00382 ATPases associated with a variety of cellular activities BKN48_09245 SM00062 Bacterial periplasmic substrate-binding proteins BKN48_09310 SM00382 ATPases associated with a variety of cellular activities BKN48_09315 SM00387 Histidine kinase-like ATPases BKN48_09320 SM00448 cheY-homologous receiver domain BKN48_09320 SM00862 Transcriptional regulatory protein, C terminal BKN48_09375 SM00420 helix_turn_helix, Deoxyribose operon repressor BKN48_09375 SM01134 BKN48_09375 BKN48_09415 SM00387 Histidine kinase-like ATPases BKN48_09445 SM00564 beta-propeller repeat BKN48_09480 SM00347 helix_turn_helix multiple antibiotic resistance protein BKN48_09505 SM00345 helix_turn_helix gluconate operon transcriptional repressor BKN48_09505 SM00895 BKN48_09505 BKN48_09520 SM01350 BKN48_09520 BKN48_09550 SM00345 helix_turn_helix gluconate operon transcriptional repressor BKN48_09550 SM00866 BKN48_09550 BKN48_09590 SM00857 Resolvase, N terminal domain BKN48_09675 SM00091 PAS domain BKN48_09675 SM00382 ATPases associated with a variety of cellular activities BKN48_09685 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BKN48_09690 SM00849 Metallo-beta-lactamase superfamily BKN48_09705 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BKN48_09705 SM00091 PAS domain BKN48_09705 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BKN48_09705 SM00387 Histidine kinase-like ATPases BKN48_09705 SM00388 His Kinase A (phosphoacceptor) domain BKN48_09710 SM00448 cheY-homologous receiver domain BKN48_09710 SM00862 Transcriptional regulatory protein, C terminal BKN48_09735 SM00788 Adenylosuccinate synthetase BKN48_09745 SM00382 ATPases associated with a variety of cellular activities BKN48_09785 SM00267 diguanylate cyclase BKN48_09810 SM01131 BKN48_09810 BKN48_09830 SM00422 helix_turn_helix, mercury resistance BKN48_09870 SM00849 Metallo-beta-lactamase superfamily BKN48_09875 SM00347 helix_turn_helix multiple antibiotic resistance protein BKN48_09905 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BKN48_09940 SM01266 BKN48_09940 BKN48_09950 SM00354 helix_turn _helix lactose operon repressor BKN48_09980 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BKN48_10000 SM00470 ParB-like nuclease domain BKN48_10015 SM00470 ParB-like nuclease domain BKN48_10025 SM01228 BKN48_10025 BKN48_10035 SM00322 K homology RNA-binding domain BKN48_10035 SM00393 Putative single-stranded nucleic acids-binding domain BKN48_10035 SM01245 BKN48_10035 BKN48_10055 SM00382 ATPases associated with a variety of cellular activities BKN48_10055 SM00760 Bacterial dnaA protein helix-turn-helix domain BKN48_10060 SM00480 DNA polymerase III beta subunit BKN48_10080 SM00387 Histidine kinase-like ATPases BKN48_10080 SM00433 TopoisomeraseII BKN48_10085 SM00434 DNA Topoisomerase IV BKN48_10120 SM00116 Domain in cystathionine beta-synthase and other proteins. BKN48_10120 SM01240 BKN48_10120 BKN48_10125 SM00936 Penicillin-binding protein 5, C-terminal domain BKN48_10160 SM00257 Lysin motif BKN48_10160 SM00636 BKN48_10160 BKN48_10180 SM00382 ATPases associated with a variety of cellular activities BKN48_10190 SM00493 BKN48_10190 BKN48_10285 SM00465 GIY-YIG type nucleases (URI domain) BKN48_10295 SM00966 SpoVT / AbrB like domain BKN48_10310 SM01208 BKN48_10310 BKN48_10315 SM00493 BKN48_10315 BKN48_10320 SM00650 Ribosomal RNA adenine dimethylases BKN48_10370 SM01400 BKN48_10370 BKN48_10390 SM00487 DEAD-like helicases superfamily BKN48_10390 SM00490 helicase superfamily c-terminal domain BKN48_10390 SM00982 BKN48_10390 BKN48_10390 SM01058 CarD-like/TRCF domain BKN48_10395 SM00966 SpoVT / AbrB like domain BKN48_10410 SM00363 S4 RNA-binding domain BKN48_10430 SM00316 Ribosomal protein S1-like RNA-binding domain BKN48_10445 SM00331 Sigma factor PP2C-like phosphatases BKN48_10445 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BKN48_10455 SM00220 Serine/Threonine protein kinases, catalytic domain BKN48_10460 SM00977 TilS substrate C-terminal domain BKN48_10470 SM00382 ATPases associated with a variety of cellular activities BKN48_10515 SM00905 Dihydroneopterin aldolase BKN48_10525 SM00530 Helix-turn-helix XRE-family like proteins BKN48_10630 SM00382 ATPases associated with a variety of cellular activities BKN48_10630 SM01086 C-terminal, D2-small domain, of ClpB protein BKN48_10635 SM00382 ATPases associated with a variety of cellular activities BKN48_10645 SM00670 Large family of predicted nucleotide-binding domains BKN48_10675 SM00840 BKN48_10675 BKN48_10680 SM00535 Ribonuclease III family BKN48_10685 SM00967 RNA 2'-O ribose methyltransferase substrate binding BKN48_10710 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BKN48_10710 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BKN48_10715 SM00649 Ribosomal protein L11/L12 BKN48_10745 SM00663 RNA polymerase I subunit A N-terminus BKN48_10765 SM00838 Elongation factor G C-terminus BKN48_10765 SM00889 Elongation factor G, domain IV BKN48_10780 SM01403 BKN48_10780 BKN48_10800 SM01382 BKN48_10800 BKN48_10800 SM01383 BKN48_10800 BKN48_10815 SM00322 K homology RNA-binding domain BKN48_10835 SM01374 BKN48_10835 BKN48_10840 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BKN48_10905 SM00316 Ribosomal protein S1-like RNA-binding domain BKN48_10925 SM00662 RNA polymerases D BKN48_10935 SM00382 ATPases associated with a variety of cellular activities BKN48_10940 SM00382 ATPases associated with a variety of cellular activities BKN48_10975 SM00646 BKN48_10975 BKN48_10990 SM01251 BKN48_10990 BKN48_11120 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. BKN48_11140 SM00342 helix_turn_helix, arabinose operon control protein BKN48_11265 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BKN48_11290 SM00448 cheY-homologous receiver domain BKN48_11290 SM00862 Transcriptional regulatory protein, C terminal BKN48_11295 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BKN48_11295 SM00388 His Kinase A (phosphoacceptor) domain BKN48_11370 SM00347 helix_turn_helix multiple antibiotic resistance protein BKN48_11395 SM00342 helix_turn_helix, arabinose operon control protein BKN48_11445 SM00450 Rhodanese Homology Domain BKN48_11465 SM00345 helix_turn_helix gluconate operon transcriptional repressor BKN48_11465 SM00866 BKN48_11465 BKN48_11505 SM00387 Histidine kinase-like ATPases BKN48_11510 SM00448 cheY-homologous receiver domain BKN48_11515 SM01130 BKN48_11515 BKN48_11530 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BKN48_11535 SM00345 helix_turn_helix gluconate operon transcriptional repressor BKN48_11535 SM00895 BKN48_11535 BKN48_11540 SM00858 BKN48_11540 BKN48_11560 SM00448 cheY-homologous receiver domain BKN48_11560 SM00862 Transcriptional regulatory protein, C terminal BKN48_11565 SM00387 Histidine kinase-like ATPases BKN48_11565 SM00388 His Kinase A (phosphoacceptor) domain BKN48_11570 SM00382 ATPases associated with a variety of cellular activities BKN48_11595 SM00327 von Willebrand factor (vWF) type A domain BKN48_11640 SM00870 BKN48_11640 BKN48_11660 SM00387 Histidine kinase-like ATPases BKN48_11665 SM00448 cheY-homologous receiver domain BKN48_11665 SM00850 LytTr DNA-binding domain BKN48_11670 SM00382 ATPases associated with a variety of cellular activities BKN48_11705 SM00028 Tetratricopeptide repeats BKN48_11715 SM00642 Alpha-amylase domain BKN48_11725 SM00382 ATPases associated with a variety of cellular activities BKN48_11780 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BKN48_11785 SM00116 Domain in cystathionine beta-synthase and other proteins. BKN48_11785 SM00382 ATPases associated with a variety of cellular activities BKN48_11820 SM00632 BKN48_11820 BKN48_11820 SM00642 Alpha-amylase domain BKN48_11840 SM00347 helix_turn_helix multiple antibiotic resistance protein BKN48_11955 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BKN48_11985 SM00833 Cobalamin synthesis protein cobW C-terminal domain BKN48_11995 SM00062 Bacterial periplasmic substrate-binding proteins BKN48_12030 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BKN48_12030 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BKN48_12040 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BKN48_12055 SM00823 Phosphopantetheine attachment site BKN48_12055 SM01294 BKN48_12055 BKN48_12060 SM00823 Phosphopantetheine attachment site BKN48_12060 SM01294 BKN48_12060 BKN48_12065 SM00823 Phosphopantetheine attachment site BKN48_12090 SM00345 helix_turn_helix gluconate operon transcriptional repressor BKN48_12105 SM00382 ATPases associated with a variety of cellular activities BKN48_12115 SM00062 Bacterial periplasmic substrate-binding proteins BKN48_12155 SM00710 Parallel beta-helix repeats BKN48_12155 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses BKN48_12180 SM00382 ATPases associated with a variety of cellular activities BKN48_12190 SM00448 cheY-homologous receiver domain BKN48_12190 SM00862 Transcriptional regulatory protein, C terminal BKN48_12195 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BKN48_12195 SM00387 Histidine kinase-like ATPases BKN48_12195 SM00388 His Kinase A (phosphoacceptor) domain BKN48_12200 SM00028 Tetratricopeptide repeats BKN48_12230 SM00382 ATPases associated with a variety of cellular activities BKN48_12260 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BKN48_12265 SM00345 helix_turn_helix gluconate operon transcriptional repressor BKN48_12300 SM00420 helix_turn_helix, Deoxyribose operon repressor BKN48_12325 SM01329 BKN48_12325 BKN48_12370 SM00796 Allophanate hydrolase subunit 1 BKN48_12375 SM00797 Allophanate hydrolase subunit 2 BKN48_12380 SM00346 helix_turn_helix isocitrate lyase regulation BKN48_12455 SM00344 helix_turn_helix ASNC type BKN48_12460 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BKN48_12460 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BKN48_12460 SM00493 BKN48_12460 BKN48_12470 SM00267 diguanylate cyclase BKN48_12560 SM00091 PAS domain BKN48_12560 SM00387 Histidine kinase-like ATPases BKN48_12565 SM00448 cheY-homologous receiver domain BKN48_12585 SM00382 ATPases associated with a variety of cellular activities BKN48_12635 SM00487 DEAD-like helicases superfamily BKN48_12635 SM00490 helicase superfamily c-terminal domain BKN48_12665 SM01005 Alanine racemase, C-terminal domain BKN48_12690 SM00387 Histidine kinase-like ATPases BKN48_12695 SM00331 Sigma factor PP2C-like phosphatases BKN48_12715 SM00331 Sigma factor PP2C-like phosphatases BKN48_12715 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BKN48_12735 SM00347 helix_turn_helix multiple antibiotic resistance protein BKN48_12740 SM00316 Ribosomal protein S1-like RNA-binding domain BKN48_12740 SM00732 Likely ribonuclease with RNase H fold. BKN48_12750 SM00731 SprT homologues. BKN48_12810 SM00344 helix_turn_helix ASNC type BKN48_12815 SM00344 helix_turn_helix ASNC type BKN48_12835 SM00860 SMI1 / KNR4 family BKN48_12865 SM00357 Cold shock protein domain BKN48_12870 SM01058 CarD-like/TRCF domain BKN48_12875 SM00342 helix_turn_helix, arabinose operon control protein BKN48_12885 SM00342 helix_turn_helix, arabinose operon control protein BKN48_12885 SM00871 Bacterial transcription activator, effector binding domain BKN48_12890 SM00345 helix_turn_helix gluconate operon transcriptional repressor BKN48_12920 SM00345 helix_turn_helix gluconate operon transcriptional repressor BKN48_12945 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BKN48_12980 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BKN48_12980 SM00387 Histidine kinase-like ATPases BKN48_12980 SM00388 His Kinase A (phosphoacceptor) domain BKN48_12985 SM00448 cheY-homologous receiver domain BKN48_12985 SM00862 Transcriptional regulatory protein, C terminal BKN48_12995 SM00345 helix_turn_helix gluconate operon transcriptional repressor BKN48_13005 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BKN48_13020 SM00387 Histidine kinase-like ATPases BKN48_13025 SM00421 helix_turn_helix, Lux Regulon BKN48_13025 SM00448 cheY-homologous receiver domain BKN48_13040 SM00422 helix_turn_helix, mercury resistance BKN48_13040 SM00871 Bacterial transcription activator, effector binding domain BKN48_13125 SM00382 ATPases associated with a variety of cellular activities BKN48_13140 SM00347 helix_turn_helix multiple antibiotic resistance protein BKN48_13155 SM00347 helix_turn_helix multiple antibiotic resistance protein BKN48_13155 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BKN48_13170 SM00345 helix_turn_helix gluconate operon transcriptional repressor BKN48_13170 SM00895 BKN48_13170 BKN48_13175 SM00257 Lysin motif BKN48_13175 SM00636 BKN48_13175 BKN48_13190 SM00098 Alkaline phosphatase homologues BKN48_13210 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BKN48_13245 SM00345 helix_turn_helix gluconate operon transcriptional repressor BKN48_13245 SM00866 BKN48_13245 BKN48_13330 SM00382 ATPases associated with a variety of cellular activities BKN48_13340 SM00881 CoA binding domain BKN48_13365 SM00883 Chaperonin 10 Kd subunit BKN48_13385 SM00507 HNH nucleases BKN48_13410 SM00028 Tetratricopeptide repeats BKN48_13410 SM00382 ATPases associated with a variety of cellular activities BKN48_13415 SM00829 Enoylreductase BKN48_13460 SM00829 Enoylreductase BKN48_13525 SM00460 Transglutaminase/protease-like homologues BKN48_13570 SM01001 AIR carboxylase BKN48_13580 SM00998 Adenylosuccinate lyase C-terminus BKN48_13595 SM01211 BKN48_13595 BKN48_13620 SM00798 AICARFT/IMPCHase bienzyme BKN48_13620 SM00851 MGS-like domain BKN48_13625 SM01209 BKN48_13625 BKN48_13625 SM01210 BKN48_13625 BKN48_13630 SM00344 helix_turn_helix ASNC type BKN48_13680 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BKN48_13680 SM00292 breast cancer carboxy-terminal domain BKN48_13680 SM00532 Ligase N family BKN48_13715 SM00845 GatB domain BKN48_13730 SM00046 Diacylglycerol kinase catalytic domain (presumed) BKN48_13780 SM00028 Tetratricopeptide repeats BKN48_13845 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BKN48_13845 SM00387 Histidine kinase-like ATPases BKN48_13850 SM00342 helix_turn_helix, arabinose operon control protein BKN48_13850 SM00448 cheY-homologous receiver domain BKN48_13875 SM00342 helix_turn_helix, arabinose operon control protein BKN48_13975 SM00347 helix_turn_helix multiple antibiotic resistance protein BKN48_13985 SM00382 ATPases associated with a variety of cellular activities BKN48_14050 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BKN48_14055 SM00382 ATPases associated with a variety of cellular activities BKN48_14065 SM00422 helix_turn_helix, mercury resistance BKN48_14090 SM00382 ATPases associated with a variety of cellular activities BKN48_14095 SM00487 DEAD-like helicases superfamily BKN48_14095 SM00490 helicase superfamily c-terminal domain BKN48_14105 SM00829 Enoylreductase BKN48_14110 SM00382 ATPases associated with a variety of cellular activities BKN48_14140 SM00656 BKN48_14140 BKN48_14150 SM00387 Histidine kinase-like ATPases BKN48_14155 SM00448 cheY-homologous receiver domain BKN48_14175 SM00849 Metallo-beta-lactamase superfamily BKN48_14260 SM00642 Alpha-amylase domain BKN48_14265 SM00345 helix_turn_helix gluconate operon transcriptional repressor BKN48_14265 SM00866 BKN48_14265 BKN48_14295 SM00226 Low molecular weight phosphatase family BKN48_14365 SM00478 endonuclease III BKN48_14400 SM00861 Transketolase, pyrimidine binding domain BKN48_14415 SM00382 ATPases associated with a variety of cellular activities BKN48_14475 SM00382 ATPases associated with a variety of cellular activities BKN48_14495 SM00421 helix_turn_helix, Lux Regulon BKN48_14495 SM00448 cheY-homologous receiver domain BKN48_14500 SM00382 ATPases associated with a variety of cellular activities BKN48_14540 SM00347 helix_turn_helix multiple antibiotic resistance protein BKN48_14620 SM00287 Bacterial SH3 domain homologues BKN48_14650 SM00478 endonuclease III BKN48_14650 SM00525 BKN48_14650 BKN48_14680 SM00382 ATPases associated with a variety of cellular activities BKN48_14845 SM01060 BKN48_14845 BKN48_14850 SM00382 ATPases associated with a variety of cellular activities BKN48_14855 SM00062 Bacterial periplasmic substrate-binding proteins BKN48_14885 SM00530 Helix-turn-helix XRE-family like proteins BKN48_14900 SM00567 E-Z type HEAT repeats BKN48_14930 SM00763 PrkA AAA domain BKN48_14945 SM00347 helix_turn_helix multiple antibiotic resistance protein BKN48_14975 SM00345 helix_turn_helix gluconate operon transcriptional repressor BKN48_14990 SM00357 Cold shock protein domain BKN48_15000 SM00267 diguanylate cyclase BKN48_15045 SM00318 Staphylococcal nuclease homologues BKN48_15055 SM00363 S4 RNA-binding domain BKN48_15065 SM00116 Domain in cystathionine beta-synthase and other proteins. BKN48_15110 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BKN48_15110 SM00387 Histidine kinase-like ATPases BKN48_15115 SM00421 helix_turn_helix, Lux Regulon BKN48_15115 SM00448 cheY-homologous receiver domain BKN48_15135 SM00257 Lysin motif BKN48_15155 SM00098 Alkaline phosphatase homologues BKN48_15160 SM00257 Lysin motif BKN48_15190 SM00345 helix_turn_helix gluconate operon transcriptional repressor BKN48_15220 SM00563 Phosphate acyltransferases BKN48_15225 SM01091 Transporter associated domain BKN48_15230 SM00422 helix_turn_helix, mercury resistance BKN48_15240 SM01091 Transporter associated domain BKN48_15300 SM00382 ATPases associated with a variety of cellular activities BKN48_15305 SM00382 ATPases associated with a variety of cellular activities BKN48_15355 SM00729 Elongator protein 3, MiaB family, Radical SAM BKN48_15385 SM00382 ATPases associated with a variety of cellular activities BKN48_15410 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BKN48_15440 SM00347 helix_turn_helix multiple antibiotic resistance protein BKN48_15470 SM00382 ATPases associated with a variety of cellular activities BKN48_15555 SM01022 BKN48_15555 BKN48_15570 SM00849 Metallo-beta-lactamase superfamily BKN48_15610 SM00829 Enoylreductase BKN48_15620 SM00855 Phosphoglycerate mutase family BKN48_15640 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BKN48_15655 SM00914 BKN48_15655 BKN48_15670 SM00894 Excalibur calcium-binding domain BKN48_15705 SM00347 helix_turn_helix multiple antibiotic resistance protein BKN48_15740 SM00354 helix_turn _helix lactose operon repressor BKN48_15880 SM00342 helix_turn_helix, arabinose operon control protein BKN48_15885 SM00354 helix_turn _helix lactose operon repressor BKN48_15950 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BKN48_15980 SM00316 Ribosomal protein S1-like RNA-binding domain BKN48_15990 SM00752 Horizontally Transferred TransMembrane Domain BKN48_16075 SM00859 Semialdehyde dehydrogenase, NAD binding domain BKN48_16095 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BKN48_16100 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BKN48_16150 SM00825 Beta-ketoacyl synthase BKN48_16160 SM00382 ATPases associated with a variety of cellular activities BKN48_16165 SM00382 ATPases associated with a variety of cellular activities BKN48_16210 SM00382 ATPases associated with a variety of cellular activities BKN48_16215 SM00382 ATPases associated with a variety of cellular activities BKN48_16280 SM01118 BKN48_16280 BKN48_16290 SM00954 Region found in RelA / SpoT proteins BKN48_16515 SM00635 Bacterial Ig-like domain 2 BKN48_16610 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BKN48_16610 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BKN48_16660 SM00382 ATPases associated with a variety of cellular activities BKN48_16670 SM00835 Cupin BKN48_16700 SM00829 Enoylreductase BKN48_16720 SM00354 helix_turn _helix lactose operon repressor BKN48_16730 SM00858 BKN48_16730 BKN48_16745 SM00382 ATPases associated with a variety of cellular activities BKN48_16750 SM00028 Tetratricopeptide repeats BKN48_16765 SM00257 Lysin motif BKN48_16765 SM00644 BKN48_16765 BKN48_16790 SM00530 Helix-turn-helix XRE-family like proteins BKN48_16805 SM00382 ATPases associated with a variety of cellular activities BKN48_16910 SM00257 Lysin motif BKN48_16975 SM00257 Lysin motif BKN48_16975 SM00644 BKN48_16975 BKN48_17025 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BKN48_17050 SM00382 ATPases associated with a variety of cellular activities BKN48_17065 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BKN48_17075 SM00382 ATPases associated with a variety of cellular activities BKN48_17135 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BKN48_17150 SM00347 helix_turn_helix multiple antibiotic resistance protein BKN48_17190 SM00382 ATPases associated with a variety of cellular activities BKN48_17205 SM00448 cheY-homologous receiver domain BKN48_17205 SM00862 Transcriptional regulatory protein, C terminal BKN48_17210 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BKN48_17210 SM00387 Histidine kinase-like ATPases BKN48_17210 SM00388 His Kinase A (phosphoacceptor) domain BKN48_17240 SM00116 Domain in cystathionine beta-synthase and other proteins. BKN48_17240 SM00924 MgtE intracellular N domain BKN48_17245 SM00422 helix_turn_helix, mercury resistance BKN48_17260 SM00347 helix_turn_helix multiple antibiotic resistance protein BKN48_17295 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen BKN48_17300 SM00052 Putative diguanylate phosphodiesterase BKN48_17300 SM00267 diguanylate cyclase BKN48_17360 SM00091 PAS domain BKN48_17360 SM00387 Histidine kinase-like ATPases BKN48_17360 SM00388 His Kinase A (phosphoacceptor) domain BKN48_17405 SM01007 Class II Aldolase and Adducin N-terminal domain BKN48_17430 SM00387 Histidine kinase-like ATPases BKN48_17430 SM00388 His Kinase A (phosphoacceptor) domain BKN48_17435 SM00347 helix_turn_helix multiple antibiotic resistance protein BKN48_17450 SM00382 ATPases associated with a variety of cellular activities BKN48_17450 SM01086 C-terminal, D2-small domain, of ClpB protein BKN48_17485 SM00822 BKN48_17485 BKN48_17490 SM00257 Lysin motif BKN48_17495 SM00257 Lysin motif BKN48_17500 SM00636 BKN48_17500 BKN48_17560 SM00354 helix_turn _helix lactose operon repressor BKN48_17565 SM01061 CAT RNA binding domain BKN48_17600 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BKN48_17600 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BKN48_17625 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BKN48_17625 SM00091 PAS domain BKN48_17625 SM00387 Histidine kinase-like ATPases BKN48_17625 SM00388 His Kinase A (phosphoacceptor) domain BKN48_17640 SM00260 Two component signalling adaptor domain BKN48_17640 SM00448 cheY-homologous receiver domain BKN48_17655 SM00257 Lysin motif BKN48_17670 SM00052 Putative diguanylate phosphodiesterase BKN48_17770 SM00852 Probable molybdopterin binding domain BKN48_17790 SM00382 ATPases associated with a variety of cellular activities BKN48_17795 SM00382 ATPases associated with a variety of cellular activities BKN48_17810 SM00382 ATPases associated with a variety of cellular activities BKN48_17815 SM01066 Carbohydrate binding domain BKN48_17820 SM00420 helix_turn_helix, Deoxyribose operon repressor BKN48_17820 SM01134 BKN48_17820 BKN48_17845 SM00382 ATPases associated with a variety of cellular activities BKN48_17870 SM00966 SpoVT / AbrB like domain BKN48_17875 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BKN48_17875 SM00091 PAS domain BKN48_17875 SM00387 Histidine kinase-like ATPases BKN48_17875 SM00388 His Kinase A (phosphoacceptor) domain BKN48_17895 SM00849 Metallo-beta-lactamase superfamily BKN48_17930 SM00861 Transketolase, pyrimidine binding domain BKN48_18020 SM00838 Elongation factor G C-terminus BKN48_18040 SM00670 Large family of predicted nucleotide-binding domains BKN48_18065 SM00878 Biotin carboxylase C-terminal domain BKN48_18110 SM00116 Domain in cystathionine beta-synthase and other proteins. BKN48_18160 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BKN48_18220 SM00740 BKN48_18220 BKN48_18230 SM00740 BKN48_18230 BKN48_18295 SM00842 Cell division protein FtsA BKN48_18300 SM00864 Tubulin/FtsZ family, GTPase domain BKN48_18300 SM00865 Tubulin/FtsZ family, C-terminal domain BKN48_18325 SM00382 ATPases associated with a variety of cellular activities BKN48_18360 SM00363 S4 RNA-binding domain BKN48_18385 SM00363 S4 RNA-binding domain BKN48_18410 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BKN48_18415 SM00851 MGS-like domain BKN48_18415 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BKN48_18415 SM01209 BKN48_18415 BKN48_18430 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BKN48_18480 SM00831 Cation transporter/ATPase, N-terminus BKN48_18495 SM00072 Guanylate kinase homologues. BKN48_18500 SM01409 BKN48_18500 BKN48_18510 SM00487 DEAD-like helicases superfamily BKN48_18510 SM00490 helicase superfamily c-terminal domain BKN48_18535 SM00331 Sigma factor PP2C-like phosphatases BKN48_18535 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BKN48_18540 SM00220 Serine/Threonine protein kinases, catalytic domain BKN48_18540 SM00740 BKN48_18540 BKN48_18555 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain BKN48_18575 SM01120 BKN48_18575 BKN48_18575 SM01121 BKN48_18575 BKN48_18590 SM00487 DEAD-like helicases superfamily BKN48_18590 SM00490 helicase superfamily c-terminal domain BKN48_18605 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BKN48_18610 SM00822 BKN48_18610 BKN48_18620 SM00358 Double-stranded RNA binding motif BKN48_18620 SM00535 Ribonuclease III family BKN48_18625 SM00968 SMC proteins Flexible Hinge Domain BKN48_18630 SM00382 ATPases associated with a variety of cellular activities BKN48_18630 SM00962 SRP54-type protein, GTPase domain BKN48_18630 SM00963 SRP54-type protein, helical bundle domain BKN48_18645 SM00382 ATPases associated with a variety of cellular activities BKN48_18645 SM00962 SRP54-type protein, GTPase domain BKN48_18645 SM00963 SRP54-type protein, helical bundle domain BKN48_18705 SM00881 CoA binding domain BKN48_18715 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BKN48_18715 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BKN48_18715 SM00493 BKN48_18715 BKN48_18735 SM00382 ATPases associated with a variety of cellular activities BKN48_18735 SM01086 C-terminal, D2-small domain, of ClpB protein BKN48_18775 SM00382 ATPases associated with a variety of cellular activities BKN48_18825 SM00448 cheY-homologous receiver domain BKN48_18860 SM00962 SRP54-type protein, GTPase domain BKN48_18870 SM00448 cheY-homologous receiver domain BKN48_18875 SM00073 Histidine Phosphotransfer domain BKN48_18875 SM00260 Two component signalling adaptor domain BKN48_18875 SM00387 Histidine kinase-like ATPases BKN48_18875 SM01231 BKN48_18875 BKN48_18880 SM00260 Two component signalling adaptor domain BKN48_18940 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BKN48_18950 SM00479 BKN48_18950 BKN48_18950 SM00481 DNA polymerase alpha chain like domain BKN48_18960 SM00316 Ribosomal protein S1-like RNA-binding domain BKN48_18960 SM00322 K homology RNA-binding domain BKN48_18995 SM00904 Riboflavin kinase BKN48_19000 SM01387 BKN48_19000 BKN48_19005 SM00316 Ribosomal protein S1-like RNA-binding domain BKN48_19005 SM00322 K homology RNA-binding domain BKN48_19040 SM00859 Semialdehyde dehydrogenase, NAD binding domain BKN48_19050 SM01130 BKN48_19050 BKN48_19055 SM00849 Metallo-beta-lactamase superfamily BKN48_19070 SM00382 ATPases associated with a variety of cellular activities BKN48_19070 SM00843 BKN48_19070 BKN48_19075 SM00345 helix_turn_helix gluconate operon transcriptional repressor BKN48_19075 SM00866 BKN48_19075 BKN48_19110 SM00530 Helix-turn-helix XRE-family like proteins BKN48_19120 SM00852 Probable molybdopterin binding domain BKN48_19125 SM00382 ATPases associated with a variety of cellular activities BKN48_19135 SM00322 K homology RNA-binding domain BKN48_19135 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BKN48_19150 SM00829 Enoylreductase BKN48_19160 SM00729 Elongator protein 3, MiaB family, Radical SAM BKN48_19175 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BKN48_19175 SM00534 ATPase domain of DNA mismatch repair MUTS family BKN48_19180 SM00853 MutL C terminal dimerisation domain BKN48_19180 SM01340 BKN48_19180 BKN48_19205 SM00849 Metallo-beta-lactamase superfamily BKN48_19215 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BKN48_19220 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BKN48_19225 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BKN48_19235 SM00825 Beta-ketoacyl synthase BKN48_19255 SM00822 BKN48_19255 BKN48_19255 SM00823 Phosphopantetheine attachment site BKN48_19255 SM00825 Beta-ketoacyl synthase BKN48_19255 SM00826 BKN48_19255 BKN48_19255 SM01294 BKN48_19255 BKN48_19260 SM00822 BKN48_19260 BKN48_19260 SM00823 Phosphopantetheine attachment site BKN48_19260 SM00825 Beta-ketoacyl synthase BKN48_19260 SM00826 BKN48_19260 BKN48_19260 SM01294 BKN48_19260 BKN48_19265 SM00822 BKN48_19265 BKN48_19265 SM00823 Phosphopantetheine attachment site BKN48_19265 SM00825 Beta-ketoacyl synthase BKN48_19265 SM00826 BKN48_19265 BKN48_19265 SM01294 BKN48_19265 BKN48_19270 SM00822 BKN48_19270 BKN48_19270 SM00823 Phosphopantetheine attachment site BKN48_19270 SM00825 Beta-ketoacyl synthase BKN48_19270 SM00826 BKN48_19270 BKN48_19270 SM01294 BKN48_19270 BKN48_19275 SM00823 Phosphopantetheine attachment site BKN48_19275 SM00825 Beta-ketoacyl synthase BKN48_19275 SM01294 BKN48_19275 BKN48_19290 SM00849 Metallo-beta-lactamase superfamily BKN48_19375 SM00646 BKN48_19375 BKN48_19380 SM00382 ATPases associated with a variety of cellular activities BKN48_19400 SM00422 helix_turn_helix, mercury resistance BKN48_19405 SM01230 BKN48_19405 BKN48_19455 SM00860 SMI1 / KNR4 family BKN48_19515 SM00318 Staphylococcal nuclease homologues BKN48_19525 SM01005 Alanine racemase, C-terminal domain BKN48_19655 SM00257 Lysin motif BKN48_19660 SM00857 Resolvase, N terminal domain BKN48_19670 SM00861 Transketolase, pyrimidine binding domain BKN48_19695 SM00448 cheY-homologous receiver domain BKN48_19765 SM01207 BKN48_19765 BKN48_19770 SM00881 CoA binding domain BKN48_19775 SM00387 Histidine kinase-like ATPases BKN48_19775 SM00433 TopoisomeraseII BKN48_19780 SM00434 DNA Topoisomerase IV BKN48_19800 SM01067 Cellulose binding domain BKN48_19815 SM00606 Cellulose Binding Domain Type IV BKN48_19860 SM00878 Biotin carboxylase C-terminal domain BKN48_19895 SM00823 Phosphopantetheine attachment site BKN48_19895 SM00824 Thioesterase BKN48_19900 SM00823 Phosphopantetheine attachment site BKN48_19905 SM00823 Phosphopantetheine attachment site BKN48_19910 SM00823 Phosphopantetheine attachment site BKN48_19915 SM00823 Phosphopantetheine attachment site BKN48_19965 SM00829 Enoylreductase BKN48_19985 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BKN48_20000 SM00822 BKN48_20000 BKN48_20035 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BKN48_20060 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BKN48_20060 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BKN48_20080 SM00656 BKN48_20080 BKN48_20095 SM00835 Cupin BKN48_20130 SM00530 Helix-turn-helix XRE-family like proteins BKN48_20220 SM00530 Helix-turn-helix XRE-family like proteins BKN48_20255 SM00028 Tetratricopeptide repeats BKN48_20280 SM00530 Helix-turn-helix XRE-family like proteins BKN48_20310 SM00860 SMI1 / KNR4 family BKN48_20325 SM00342 helix_turn_helix, arabinose operon control protein BKN48_20340 SM00849 Metallo-beta-lactamase superfamily BKN48_20345 SM00871 Bacterial transcription activator, effector binding domain BKN48_20360 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BKN48_20400 SM00421 helix_turn_helix, Lux Regulon BKN48_20400 SM00448 cheY-homologous receiver domain BKN48_20405 SM00257 Lysin motif BKN48_20410 SM00341 Helicase and RNase D C-terminal BKN48_20410 SM00487 DEAD-like helicases superfamily BKN48_20410 SM00490 helicase superfamily c-terminal domain BKN48_20410 SM00956 BKN48_20410 BKN48_20500 SM00861 Transketolase, pyrimidine binding domain BKN48_20505 SM00327 von Willebrand factor (vWF) type A domain BKN48_20510 SM00382 ATPases associated with a variety of cellular activities BKN48_20520 SM00257 Lysin motif