locus-tag class description MID01_00010 PF00712 DNA polymerase III beta subunit, N-terminal domain MID01_00010 PF02767 DNA polymerase III beta subunit, central domain MID01_00010 PF02768 DNA polymerase III beta subunit, C-terminal domain MID01_00020 PF02463 RecF/RecN/SMC N terminal domain MID01_00025 PF04025 Domain of unknown function (DUF370) MID01_00030 PF00204 DNA gyrase B MID01_00030 PF00986 DNA gyrase B subunit, carboxyl terminus MID01_00030 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID01_00030 PF01751 Toprim domain MID01_00035 PF03989 DNA gyrase C-terminal domain, beta-propeller MID01_00035 PF00521 DNA gyrase/topoisomerase IV, subunit A MID01_00065 PF14175 YaaC-like Protein MID01_00070 PF00571 CBS domain MID01_00070 PF00478 IMP dehydrogenase / GMP reductase domain MID01_00075 PF07943 Penicillin-binding protein 5, C-terminal domain MID01_00075 PF00768 D-alanyl-D-alanine carboxypeptidase MID01_00080 PF01680 SOR/SNZ family MID01_00085 PF01174 SNO glutamine amidotransferase family MID01_00090 PF02403 Seryl-tRNA synthetase N-terminal domain MID01_00090 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MID01_00100 PF01712 Deoxynucleoside kinase MID01_00105 PF01712 Deoxynucleoside kinase MID01_00110 PF00704 Glycosyl hydrolases family 18 MID01_00110 PF01476 LysM domain MID01_00115 PF00857 Isochorismatase family MID01_00120 PF14437 MafB19-like deaminase MID01_00130 PF12169 DNA polymerase III subunits gamma and tau domain III MID01_00135 PF02575 YbaB/EbfC DNA-binding family MID01_00140 PF02132 RecR protein MID01_00140 PF13662 Toprim domain MID01_00145 PF10704 Protein of unknown function (DUF2508) MID01_00150 PF07441 SigmaK-factor processing regulatory protein BofA MID01_00180 PF10764 Inhibitor of sigma-G Gin MID01_00185 PF10112 5-bromo-4-chloroindolyl phosphate hydrolysis protein MID01_00190 PF05816 Toxic anion resistance protein (TelA) MID01_00195 PF01276 Orn/Lys/Arg decarboxylase, major domain MID01_00195 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain MID01_00200 PF02223 Thymidylate kinase MID01_00205 PF06153 Cyclic-di-AMP receptor MID01_00210 PF03885 Protein of unknown function (DUF327) MID01_00215 PF09115 DNA polymerase III, delta subunit, C terminal MID01_00220 PF04468 PSP1 C-terminal conserved region MID01_00225 PF06156 Initiation control protein YabA MID01_00230 PF05175 Methyltransferase small domain MID01_00235 PF01541 GIY-YIG catalytic domain MID01_00240 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MID01_00245 PF18277 AbrB C-terminal domain MID01_00245 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin MID01_00250 PF08264 Anticodon-binding domain of tRNA MID01_00250 PF09334 tRNA synthetases class I (M) MID01_00250 PF01588 Putative tRNA binding domain MID01_00255 PF01026 TatD related DNase MID01_00260 PF06725 3D domain MID01_00260 PF03990 G5-linked-Ubiquitin-like domain MID01_00260 PF07501 G5 domain MID01_00265 PF13331 Domain of unknown function (DUF4093) MID01_00265 PF13662 Toprim domain MID01_00270 PF00398 Ribosomal RNA adenine dimethylase MID01_00275 PF05582 YabG peptidase U57 MID01_00280 PF06257 Biofilm formation stimulator VEG MID01_00285 PF00269 Small, acid-soluble spore proteins, alpha/beta type MID01_00290 PF08544 GHMP kinases C terminal MID01_00290 PF00288 GHMP kinases N terminal domain MID01_00295 PF00156 Phosphoribosyl transferase domain MID01_00295 PF09182 Bacterial purine repressor, N-terminal MID01_00300 PF01042 Endoribonuclease L-PSP MID01_00305 PF04026 SpoVG MID01_00310 PF00132 Bacterial transferase hexapeptide (six repeats) MID01_00310 PF00483 Nucleotidyl transferase MID01_00315 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase MID01_00315 PF14572 Phosphoribosyl synthetase-associated domain MID01_00320 PF01386 Ribosomal L25p family MID01_00320 PF14693 Ribosomal protein TL5, C-terminal domain MID01_00325 PF01195 Peptidyl-tRNA hydrolase MID01_00330 PF10955 Protein of unknown function (DUF2757) MID01_00335 PF17757 UvrB interaction domain MID01_00335 PF00271 Helicase conserved C-terminal domain MID01_00335 PF03461 TRCF domain MID01_00335 PF02559 CarD-like/TRCF domain MID01_00335 PF00270 DEAD/DEAH box helicase MID01_00340 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin MID01_00340 PF15714 Stage V sporulation protein T C-terminal, transcription factor MID01_00345 PF01943 Polysaccharide biosynthesis protein MID01_00345 PF14667 Polysaccharide biosynthesis C-terminal domain MID01_00350 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MID01_00350 PF03819 MazG nucleotide pyrophosphohydrolase domain MID01_00355 PF01479 S4 domain MID01_00360 PF07873 YabP family MID01_00365 PF09578 Spore cortex protein YabQ (Spore_YabQ) MID01_00370 PF04977 Septum formation initiator MID01_00375 PF00575 S1 RNA binding domain MID01_00390 PF07228 Stage II sporulation protein E (SpoIIE) MID01_00395 PF00092 von Willebrand factor type A domain MID01_00400 PF00069 Protein kinase domain MID01_00405 PF09179 TilS substrate binding domain MID01_00405 PF11734 TilS substrate C-terminal domain MID01_00405 PF01171 PP-loop family MID01_00410 PF00156 Phosphoribosyl transferase domain MID01_00415 PF00004 ATPase family associated with various cellular activities (AAA) MID01_00415 PF17862 AAA+ lid domain MID01_00415 PF06480 FtsH Extracellular MID01_00415 PF01434 Peptidase family M41 MID01_00420 PF03309 Type III pantothenate kinase MID01_00425 PF01430 Hsp33 protein MID01_00430 PF13145 PPIC-type PPIASE domain MID01_00435 PF00291 Pyridoxal-phosphate dependent enzyme MID01_00440 PF04715 Anthranilate synthase component I, N terminal region MID01_00440 PF00425 chorismate binding enzyme MID01_00445 PF00117 Glutamine amidotransferase class-I MID01_00450 PF01063 Amino-transferase class IV MID01_00455 PF00809 Pterin binding enzyme MID01_00460 PF02152 Dihydroneopterin aldolase MID01_00465 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) MID01_00470 PF01381 Helix-turn-helix MID01_00475 PF01207 Dihydrouridine synthase (Dus) MID01_00480 PF00152 tRNA synthetases class II (D, K and N) MID01_00480 PF01336 OB-fold nucleic acid binding domain MID01_00560 PF05848 CtsR N-terminal HTH domain MID01_00560 PF17727 CtsR C-terminal dimerization domain MID01_00565 PF02151 UvrB/uvrC motif MID01_00570 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain MID01_00575 PF10431 C-terminal, D2-small domain, of ClpB protein MID01_00575 PF02861 Clp amino terminal domain, pathogenicity island component MID01_00575 PF07724 AAA domain (Cdc48 subfamily) MID01_00575 PF00004 ATPase family associated with various cellular activities (AAA) MID01_00575 PF17871 AAA lid domain MID01_00580 PF18073 Rubredoxin metal binding domain MID01_00585 PF02457 DisA bacterial checkpoint controller nucleotide-binding MID01_00585 PF10635 DisA bacterial checkpoint controller linker region MID01_00595 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase MID01_00600 PF02542 YgbB family MID01_00605 PF00749 tRNA synthetases class I (E and Q), catalytic domain MID01_00610 PF00132 Bacterial transferase hexapeptide (six repeats) MID01_00610 PF06426 Serine acetyltransferase, N-terminal MID01_00615 PF09190 DALR domain MID01_00615 PF01406 tRNA synthetases class I (C) catalytic domain MID01_00620 PF00636 Ribonuclease III domain MID01_00625 PF08032 RNA 2'-O ribose methyltransferase substrate binding MID01_00625 PF00588 SpoU rRNA Methylase family MID01_00630 PF05991 YacP-like NYN domain MID01_00635 PF04542 Sigma-70 region 2 MID01_00635 PF08281 Sigma-70, region 4 MID01_00640 PF00471 Ribosomal protein L33 MID01_00645 PF00584 SecE/Sec61-gamma subunits of protein translocation complex MID01_00650 PF00467 KOW motif MID01_00650 PF02357 Transcription termination factor nusG MID01_00655 PF00298 Ribosomal protein L11, RNA binding domain MID01_00655 PF03946 Ribosomal protein L11, N-terminal domain MID01_00660 PF00687 Ribosomal protein L1p/L10e family MID01_00665 PF00466 Ribosomal protein L10 MID01_00670 PF16320 Ribosomal protein L7/L12 dimerisation domain MID01_00670 PF00542 Ribosomal protein L7/L12 C-terminal domain MID01_00675 PF05175 Methyltransferase small domain MID01_00680 PF04563 RNA polymerase beta subunit MID01_00680 PF04561 RNA polymerase Rpb2, domain 2 MID01_00680 PF04565 RNA polymerase Rpb2, domain 3 MID01_00680 PF10385 RNA polymerase beta subunit external 1 domain MID01_00680 PF00562 RNA polymerase Rpb2, domain 6 MID01_00680 PF04560 RNA polymerase Rpb2, domain 7 MID01_00685 PF04998 RNA polymerase Rpb1, domain 5 MID01_00685 PF05000 RNA polymerase Rpb1, domain 4 MID01_00685 PF04997 RNA polymerase Rpb1, domain 1 MID01_00685 PF00623 RNA polymerase Rpb1, domain 2 MID01_00685 PF04983 RNA polymerase Rpb1, domain 3 MID01_00690 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family MID01_00695 PF00164 Ribosomal protein S12/S23 MID01_00700 PF00177 Ribosomal protein S7p/S5e MID01_00705 PF00679 Elongation factor G C-terminus MID01_00705 PF14492 Elongation Factor G, domain II MID01_00705 PF03764 Elongation factor G, domain IV MID01_00705 PF00009 Elongation factor Tu GTP binding domain MID01_00705 PF03144 Elongation factor Tu domain 2 MID01_00710 PF00009 Elongation factor Tu GTP binding domain MID01_00710 PF03144 Elongation factor Tu domain 2 MID01_00710 PF03143 Elongation factor Tu C-terminal domain MID01_00715 PF12146 Serine aminopeptidase, S33 MID01_00720 PF00338 Ribosomal protein S10p/S20e MID01_00725 PF00297 Ribosomal protein L3 MID01_00730 PF00573 Ribosomal protein L4/L1 family MID01_00735 PF00276 Ribosomal protein L23 MID01_00740 PF00181 Ribosomal Proteins L2, RNA binding domain MID01_00740 PF03947 Ribosomal Proteins L2, C-terminal domain MID01_00745 PF00203 Ribosomal protein S19 MID01_00750 PF00237 Ribosomal protein L22p/L17e MID01_00755 PF07650 KH domain MID01_00755 PF00189 Ribosomal protein S3, C-terminal domain MID01_00760 PF00252 Ribosomal protein L16p/L10e MID01_00765 PF00831 Ribosomal L29 protein MID01_00770 PF00366 Ribosomal protein S17 MID01_00775 PF00238 Ribosomal protein L14p/L23e MID01_00780 PF00467 KOW motif MID01_00780 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 MID01_00785 PF00281 Ribosomal protein L5 MID01_00785 PF00673 ribosomal L5P family C-terminus MID01_00790 PF00253 Ribosomal protein S14p/S29e MID01_00795 PF00410 Ribosomal protein S8 MID01_00800 PF00347 Ribosomal protein L6 MID01_00805 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast MID01_00810 PF00333 Ribosomal protein S5, N-terminal domain MID01_00810 PF03719 Ribosomal protein S5, C-terminal domain MID01_00815 PF00327 Ribosomal protein L30p/L7e MID01_00820 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A MID01_00825 PF00344 SecY translocase MID01_00830 PF05191 Adenylate kinase, active site lid MID01_00835 PF00557 Metallopeptidase family M24 MID01_00845 PF01176 Translation initiation factor 1A / IF-1 MID01_00850 PF00444 Ribosomal protein L36 MID01_00855 PF00416 Ribosomal protein S13/S18 MID01_00860 PF00411 Ribosomal protein S11 MID01_00865 PF01000 RNA polymerase Rpb3/RpoA insert domain MID01_00865 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain MID01_00865 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain MID01_00870 PF01196 Ribosomal protein L17 MID01_00875 PF00005 ABC transporter MID01_00880 PF00005 ABC transporter MID01_00885 PF02361 Cobalt transport protein MID01_00890 PF01416 tRNA pseudouridine synthase MID01_00895 PF00572 Ribosomal protein L13 MID01_00900 PF00380 Ribosomal protein S9/S16 MID01_00905 PF08241 Methyltransferase domain MID01_00910 PF10730 Protein of unknown function (DUF2521) MID01_00915 PF01520 N-acetylmuramoyl-L-alanine amidase MID01_00920 PF10609 NUBPL iron-transfer P-loop NTPase MID01_00925 PF17898 Spore germination GerD central core domain MID01_00930 PF14089 KinB-signalling pathway activation in sporulation MID01_00935 PF01522 Polysaccharide deacetylase MID01_01020 PF01740 STAS domain MID01_01020 PF00916 Sulfate permease family MID01_01025 PF01758 Sodium Bile acid symporter family MID01_01030 PF00756 Putative esterase MID01_01035 PF01032 FecCD transport family MID01_01040 PF01032 FecCD transport family MID01_01045 PF01497 Periplasmic binding protein MID01_01050 PF12833 Helix-turn-helix domain MID01_01050 PF01497 Periplasmic binding protein MID01_01055 PF07075 Protein of unknown function (DUF1343) MID01_01060 PF00933 Glycosyl hydrolase family 3 N terminal domain MID01_01060 PF01915 Glycosyl hydrolase family 3 C-terminal domain MID01_01065 PF00144 Beta-lactamase MID01_01070 PF02378 Phosphotransferase system, EIIC MID01_01070 PF00367 phosphotransferase system, EIIB MID01_01075 PF01418 Helix-turn-helix domain, rpiR family MID01_01075 PF01380 SIS domain MID01_01080 PF01380 SIS domain MID01_01090 PF04463 Protein of unknown function (DUF523) MID01_01120 PF04542 Sigma-70 region 2 MID01_01120 PF08281 Sigma-70, region 4 MID01_01125 PF13490 Putative zinc-finger MID01_01130 PF02457 DisA bacterial checkpoint controller nucleotide-binding MID01_01135 PF07949 YbbR-like protein MID01_01140 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MID01_01140 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MID01_01140 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MID01_01140 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MID01_01145 PF01380 SIS domain MID01_01155 PF00730 HhH-GPD superfamily base excision DNA repair protein MID01_01155 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain MID01_01160 PF12833 Helix-turn-helix domain MID01_01160 PF02805 Metal binding domain of Ada MID01_01165 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain MID01_01165 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain MID01_01170 PF00361 Proton-conducting membrane transporter MID01_01170 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MID01_01175 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) MID01_01190 PF10057 Uncharacterized conserved protein (DUF2294) MID01_01200 PF07690 Major Facilitator Superfamily MID01_01215 PF00069 Protein kinase domain MID01_01225 PF16226 Domain of unknown function (DUF4885) MID01_01230 PF00324 Amino acid permease MID01_01235 PF17334 Minor curli fiber component A MID01_01240 PF17340 Family of unknown function (DUF5370) MID01_01245 PF00905 Penicillin binding protein transpeptidase domain MID01_01250 PF00067 Cytochrome P450 MID01_01260 PF13520 Amino acid permease MID01_01265 PF03009 Glycerophosphoryl diester phosphodiesterase family MID01_01270 PF07690 Major Facilitator Superfamily MID01_01275 PF10852 Protein of unknown function (DUF2651) MID01_01280 PF00583 Acetyltransferase (GNAT) family MID01_01280 PF01047 MarR family MID01_01285 PF07690 Major Facilitator Superfamily MID01_01295 PF08924 Domain of unknown function (DUF1906) MID01_01295 PF01471 Putative peptidoglycan binding domain MID01_01300 PF00892 EamA-like transporter family MID01_01305 PF02311 AraC-like ligand binding domain MID01_01305 PF12833 Helix-turn-helix domain MID01_01310 PF03747 ADP-ribosylglycohydrolase MID01_01315 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH MID01_01315 PF04740 LXG domain of WXG superfamily MID01_01320 PF02222 ATP-grasp domain MID01_01325 PF00089 Trypsin MID01_01330 PF10794 Protein of unknown function (DUF2606) MID01_01335 PF12697 Alpha/beta hydrolase family MID01_01340 PF01066 CDP-alcohol phosphatidyltransferase MID01_01345 PF09335 SNARE associated Golgi protein MID01_01350 PF02666 Phosphatidylserine decarboxylase MID01_01360 PF05139 Erythromycin esterase MID01_01365 PF17773 UPF0176 acylphosphatase like domain MID01_01365 PF12368 Rhodanase C-terminal MID01_01365 PF00581 Rhodanese-like domain MID01_01370 PF00375 Sodium:dicarboxylate symporter family MID01_01375 PF00367 phosphotransferase system, EIIB MID01_01375 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 MID01_01375 PF02378 Phosphotransferase system, EIIC MID01_01380 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase MID01_01385 PF00392 Bacterial regulatory proteins, gntR family MID01_01385 PF07702 UTRA domain MID01_01395 PF01063 Amino-transferase class IV MID01_01400 PF00324 Amino acid permease MID01_01405 PF02574 Homocysteine S-methyltransferase MID01_01410 PF01235 Sodium:alanine symporter family MID01_01415 PF04960 Glutaminase MID01_01420 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID01_01425 PF00072 Response regulator receiver domain MID01_01425 PF08664 YcbB domain MID01_01430 PF00701 Dihydrodipicolinate synthetase family MID01_01435 PF00171 Aldehyde dehydrogenase family MID01_01440 PF07690 Major Facilitator Superfamily MID01_01445 PF13378 Enolase C-terminal domain-like MID01_01450 PF00392 Bacterial regulatory proteins, gntR family MID01_01450 PF07729 FCD domain MID01_01455 PF08666 SAF domain MID01_01455 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus MID01_01460 PF01636 Phosphotransferase enzyme family MID01_01465 PF15777 Tryptophan RNA-binding attenuator protein inhibitory protein MID01_01470 PF00892 EamA-like transporter family MID01_01475 PF00072 Response regulator receiver domain MID01_01475 PF00486 Transcriptional regulatory protein, C terminal MID01_01480 PF00512 His Kinase A (phospho-acceptor) domain MID01_01480 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID01_01485 PF00005 ABC transporter MID01_01500 PF10710 Protein of unknown function (DUF2512) MID01_01505 PF07486 Cell Wall Hydrolase MID01_01510 PF10138 vWA found in TerF C terminus MID01_01520 PF09423 PhoD-like phosphatase MID01_01520 PF16655 PhoD-like phosphatase, N-terminal domain MID01_01525 PF02416 mttA/Hcf106 family MID01_01530 PF00902 Sec-independent protein translocase protein (TatC) MID01_01535 PF01470 Pyroglutamyl peptidase MID01_01540 PF00266 Aminotransferase class-V MID01_01545 PF07690 Major Facilitator Superfamily MID01_01550 PF00440 Bacterial regulatory proteins, tetR family MID01_01555 PF00710 Asparaginase, N-terminal MID01_01555 PF17763 Glutaminase/Asparaginase C-terminal domain MID01_01560 PF01674 Lipase (class 2) MID01_01565 PF06271 RDD family MID01_01570 PF02810 SEC-C motif MID01_01570 PF05225 helix-turn-helix, Psq domain MID01_01575 PF14501 GHKL domain MID01_01580 PF04397 LytTr DNA-binding domain MID01_01580 PF00072 Response regulator receiver domain MID01_01585 PF00005 ABC transporter MID01_01590 PF12679 ABC-2 family transporter protein MID01_01595 PF00248 Aldo/keto reductase family MID01_01600 PF11611 Domain of unknown function (DUF4352) MID01_01600 PF17118 Domain of unknown function (DUF5105) MID01_01610 PF16244 Domain of unknown function (DUF4901) MID01_01615 PF16244 Domain of unknown function (DUF4901) MID01_01620 PF13539 D-alanyl-D-alanine carboxypeptidase MID01_01625 PF18801 response regulator aspartate phosphatase H, N terminal MID01_01635 PF00128 Alpha amylase, catalytic domain MID01_01640 PF01297 Zinc-uptake complex component A periplasmic MID01_01645 PF00005 ABC transporter MID01_01650 PF00950 ABC 3 transport family MID01_01655 PF00296 Luciferase-like monooxygenase MID01_01660 PF02342 TerD domain MID01_01665 PF02342 TerD domain MID01_01670 PF02342 TerD domain MID01_01675 PF03741 Integral membrane protein TerC family MID01_01680 PF14266 Putative component of 'biosynthetic module' MID01_01685 PF05816 Toxic anion resistance protein (TelA) MID01_01690 PF07690 Major Facilitator Superfamily MID01_01695 PF07690 Major Facilitator Superfamily MID01_01705 PF00571 CBS domain MID01_01705 PF00005 ABC transporter MID01_01710 PF00528 Binding-protein-dependent transport system inner membrane component MID01_01715 PF04069 Substrate binding domain of ABC-type glycine betaine transport system MID01_01720 PF07687 Peptidase dimerisation domain MID01_01720 PF01546 Peptidase family M20/M25/M40 MID01_01725 PF03606 C4-dicarboxylate anaerobic carrier MID01_01735 PF00128 Alpha amylase, catalytic domain MID01_01735 PF16738 Starch-binding module 26 MID01_01740 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain MID01_01740 PF00056 lactate/malate dehydrogenase, NAD binding domain MID01_01745 PF02652 L-lactate permease MID01_01750 PF07690 Major Facilitator Superfamily MID01_01755 PF01047 MarR family MID01_01760 PF01810 LysE type translocator MID01_01765 PF08892 YqcI/YcgG family MID01_01770 PF00324 Amino acid permease MID01_01775 PF09347 Domain of unknown function (DUF1989) MID01_01780 PF02540 NAD synthase MID01_01790 PF01202 Shikimate kinase MID01_01795 PF08241 Methyltransferase domain MID01_01800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID01_01800 PF03466 LysR substrate binding domain MID01_01805 PF05448 Acetyl xylan esterase (AXE1) MID01_01810 PF10127 RNA repair pathway DNA polymerase beta family MID01_01815 PF01619 Proline dehydrogenase MID01_01820 PF00171 Aldehyde dehydrogenase family MID01_01825 PF00474 Sodium:solute symporter family MID01_01830 PF13556 PucR C-terminal helix-turn-helix domain MID01_01830 PF17853 GGDEF-like domain MID01_01835 PF09323 Domain of unknown function (DUF1980) MID01_01840 PF03773 Predicted permease MID01_01845 PF00561 alpha/beta hydrolase fold MID01_01850 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID01_01855 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MID01_01860 PF00355 Rieske [2Fe-2S] domain MID01_01865 PF04324 BFD-like [2Fe-2S] binding domain MID01_01865 PF18267 Rubredoxin NAD+ reductase C-terminal domain MID01_01865 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID01_01865 PF01077 Nitrite and sulphite reductase 4Fe-4S domain MID01_01865 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain MID01_01870 PF04879 Molybdopterin oxidoreductase Fe4S4 domain MID01_01870 PF01568 Molydopterin dinucleotide binding domain MID01_01870 PF00384 Molybdopterin oxidoreductase MID01_01875 PF18267 Rubredoxin NAD+ reductase C-terminal domain MID01_01875 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID01_01875 PF04324 BFD-like [2Fe-2S] binding domain MID01_01875 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain MID01_01880 PF07690 Major Facilitator Superfamily MID01_01885 PF02649 Type I GTP cyclohydrolase folE2 MID01_01890 PF03734 L,D-transpeptidase catalytic domain MID01_01900 PF07683 Cobalamin synthesis protein cobW C-terminal domain MID01_01900 PF02492 CobW/HypB/UreG, nucleotide-binding domain MID01_01905 PF00528 Binding-protein-dependent transport system inner membrane component MID01_01910 PF00497 Bacterial extracellular solute-binding proteins, family 3 MID01_01920 PF06271 RDD family MID01_01925 PF10925 Protein of unknown function (DUF2680) MID01_01930 PF00232 Glycosyl hydrolase family 1 MID01_01935 PF11033 Competence protein J (ComJ) MID01_01940 PF14040 Deoxyribonuclease NucA/NucB MID01_01945 PF00672 HAMP domain MID01_01945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID01_01945 PF17202 Single cache domain 3 MID01_01950 PF01380 SIS domain MID01_01955 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family MID01_01960 PF01638 HxlR-like helix-turn-helix MID01_01965 PF13193 AMP-binding enzyme C-terminal domain MID01_01965 PF00668 Condensation domain MID01_01965 PF00550 Phosphopantetheine attachment site MID01_01965 PF00501 AMP-binding enzyme MID01_01975 PF17584 Bacillus competence protein S MID01_01985 PF13193 AMP-binding enzyme C-terminal domain MID01_01985 PF00668 Condensation domain MID01_01985 PF00550 Phosphopantetheine attachment site MID01_01985 PF00501 AMP-binding enzyme MID01_01990 PF13193 AMP-binding enzyme C-terminal domain MID01_01990 PF00668 Condensation domain MID01_01990 PF00975 Thioesterase domain MID01_01990 PF00550 Phosphopantetheine attachment site MID01_01990 PF00501 AMP-binding enzyme MID01_01995 PF00975 Thioesterase domain MID01_02000 PF07690 Major Facilitator Superfamily MID01_02005 PF14317 YcxB-like protein MID01_02010 PF00892 EamA-like transporter family MID01_02015 PF00392 Bacterial regulatory proteins, gntR family MID01_02015 PF00155 Aminotransferase class I and II MID01_02020 PF01648 4'-phosphopantetheinyl transferase superfamily MID01_02030 PF00005 ABC transporter MID01_02035 PF00528 Binding-protein-dependent transport system inner membrane component MID01_02040 PF00497 Bacterial extracellular solute-binding proteins, family 3 MID01_02045 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID01_02045 PF03466 LysR substrate binding domain MID01_02050 PF02441 Flavoprotein MID01_02055 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase MID01_02070 PF00561 alpha/beta hydrolase fold MID01_02075 PF00854 POT family MID01_02080 PF13229 Right handed beta helix region MID01_02080 PF12708 Pectate lyase superfamily protein MID01_02090 PF03323 Bacillus/Clostridium GerA spore germination protein MID01_02095 PF05504 Spore germination B3/ GerAC like, C-terminal MID01_02100 PF03845 Spore germination protein MID01_02105 PF00005 ABC transporter MID01_02110 PF02687 FtsX-like permease family MID01_02110 PF12704 MacB-like periplasmic core domain MID01_02115 PF00486 Transcriptional regulatory protein, C terminal MID01_02115 PF00072 Response regulator receiver domain MID01_02120 PF00512 His Kinase A (phospho-acceptor) domain MID01_02120 PF00672 HAMP domain MID01_02120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID01_02125 PF18801 response regulator aspartate phosphatase H, N terminal MID01_02130 PF11131 Rap-phr extracellular signalling MID01_02135 PF09680 Family of unknown function MID01_02140 PF09680 Family of unknown function MID01_02145 PF13840 ACT domain MID01_02145 PF00696 Amino acid kinase family MID01_02150 PF01032 FecCD transport family MID01_02155 PF01032 FecCD transport family MID01_02160 PF00005 ABC transporter MID01_02165 PF01497 Periplasmic binding protein MID01_02170 PF07690 Major Facilitator Superfamily MID01_02175 PF00440 Bacterial regulatory proteins, tetR family MID01_02180 PF00881 Nitroreductase family MID01_02185 PF03992 Antibiotic biosynthesis monooxygenase MID01_02190 PF01022 Bacterial regulatory protein, arsR family MID01_02195 PF00392 Bacterial regulatory proteins, gntR family MID01_02195 PF00155 Aminotransferase class I and II MID01_02200 PF00202 Aminotransferase class-III MID01_02205 PF00171 Aldehyde dehydrogenase family MID01_02210 PF06800 Sugar transport protein MID01_02220 PF07987 Domain of unkown function (DUF1775) MID01_02225 PF04234 CopC domain MID01_02225 PF05425 Copper resistance protein D MID01_02225 PF13115 YtkA-like MID01_02230 PF08220 DeoR-like helix-turn-helix domain MID01_02230 PF05573 NosL MID01_02240 PF02378 Phosphotransferase system, EIIC MID01_02240 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit MID01_02245 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 MID01_02250 PF01232 Mannitol dehydrogenase Rossmann domain MID01_02250 PF08125 Mannitol dehydrogenase C-terminal domain MID01_02255 PF00180 Isocitrate/isopropylmalate dehydrogenase MID01_02260 PF10502 Signal peptidase, peptidase S26 MID01_02265 PF01738 Dienelactone hydrolase family MID01_02270 PF07977 FabA-like domain MID01_02285 PF03746 LamB/YcsF family MID01_02290 PF01566 Natural resistance-associated macrophage protein MID01_02295 PF07286 Protein of unknown function (DUF1445) MID01_02300 PF02682 Carboxyltransferase domain, subdomain C and D MID01_02305 PF02626 Carboxyltransferase domain, subdomain A and B MID01_02310 PF01614 Bacterial transcriptional regulator MID01_02310 PF09339 IclR helix-turn-helix domain MID01_02315 PF13472 GDSL-like Lipase/Acylhydrolase family MID01_02320 PF13129 Protein of unknown function (DUF3953) MID01_02325 PF03992 Antibiotic biosynthesis monooxygenase MID01_02330 PF00905 Penicillin binding protein transpeptidase domain MID01_02330 PF05223 NTF2-like N-terminal transpeptidase domain MID01_02330 PF03717 Penicillin-binding Protein dimerisation domain MID01_02335 PF00248 Aldo/keto reductase family MID01_02340 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 MID01_02340 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit MID01_02340 PF00874 PRD domain MID01_02340 PF05043 Mga helix-turn-helix domain MID01_02340 PF08279 HTH domain MID01_02345 PF00501 AMP-binding enzyme MID01_02345 PF13193 AMP-binding enzyme C-terminal domain MID01_02350 PF13649 Methyltransferase domain MID01_02365 PF13302 Acetyltransferase (GNAT) domain MID01_02370 PF16242 Pyridoxamine 5'-phosphate oxidase like MID01_02375 PF10997 Alternate to MurJ MID01_02380 PF12823 Domain of unknown function (DUF3817) MID01_02385 PF01037 Lrp/AsnC ligand binding domain MID01_02390 PF01751 Toprim domain MID01_02390 PF01131 DNA topoisomerase MID01_02400 PF00990 Diguanylate cyclase, GGDEF domain MID01_02405 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) MID01_02415 PF03170 Bacterial cellulose synthase subunit MID01_02420 PF13520 Amino acid permease MID01_02425 PF00293 NUDIX domain MID01_02430 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MID01_02430 PF00205 Thiamine pyrophosphate enzyme, central domain MID01_02430 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MID01_02445 PF01566 Natural resistance-associated macrophage protein MID01_02450 PF04226 Transglycosylase associated protein MID01_02455 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) MID01_02460 PF12787 EcsC protein family MID01_02465 PF10685 Stress-induced bacterial acidophilic repeat motif MID01_02465 PF00477 Small hydrophilic plant seed protein MID01_02470 PF07883 Cupin domain MID01_02475 PF16291 Domain of unknown function (DUF4937 MID01_02480 PF05067 Manganese containing catalase MID01_02485 PF03480 Bacterial extracellular solute-binding protein, family 7 MID01_02490 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID01_02490 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain MID01_02490 PF17203 Single cache domain 3 MID01_02495 PF08279 HTH domain MID01_02495 PF00072 Response regulator receiver domain MID01_02500 PF00375 Sodium:dicarboxylate symporter family MID01_02505 PF01594 AI-2E family transporter MID01_02510 PF00005 ABC transporter MID01_02525 PF08028 Acyl-CoA dehydrogenase, C-terminal domain MID01_02525 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MID01_02525 PF02770 Acyl-CoA dehydrogenase, middle domain MID01_02530 PF13040 Fur-regulated basic protein B MID01_02540 PF01545 Cation efflux family MID01_02540 PF16916 Dimerisation domain of Zinc Transporter MID01_02545 PF00085 Thioredoxin MID01_02550 PF07478 D-ala D-ala ligase C-terminus MID01_02550 PF01820 D-ala D-ala ligase N-terminus MID01_02555 PF02875 Mur ligase family, glutamate ligase domain MID01_02555 PF08245 Mur ligase middle domain MID01_02555 PF01225 Mur ligase family, catalytic domain MID01_02560 PF00270 DEAD/DEAH box helicase MID01_02560 PF00271 Helicase conserved C-terminal domain MID01_02565 PF03703 Bacterial PH domain MID01_02570 PF03703 Bacterial PH domain MID01_02575 PF01694 Rhomboid family MID01_02580 PF01648 4'-phosphopantetheinyl transferase superfamily MID01_02590 PF01168 Alanine racemase, N-terminal domain MID01_02590 PF00842 Alanine racemase, C-terminal domain MID01_02595 PF01402 Ribbon-helix-helix protein, copG family MID01_02600 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system MID01_02605 PF01740 STAS domain MID01_02605 PF08678 Rsbr N terminal MID01_02610 PF01740 STAS domain MID01_02615 PF13581 Histidine kinase-like ATPase domain MID01_02620 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain MID01_02620 PF07228 Stage II sporulation protein E (SpoIIE) MID01_02625 PF01740 STAS domain MID01_02630 PF13581 Histidine kinase-like ATPase domain MID01_02635 PF04542 Sigma-70 region 2 MID01_02635 PF04539 Sigma-70 region 3 MID01_02635 PF04545 Sigma-70, region 4 MID01_02640 PF07228 Stage II sporulation protein E (SpoIIE) MID01_02645 PF16921 Tex protein YqgF-like domain MID01_02645 PF09371 Tex-like protein N-terminal domain MID01_02645 PF00575 S1 RNA binding domain MID01_02645 PF17674 HHH domain MID01_02655 PF10263 SprT-like family MID01_02655 PF17283 SprT-like zinc ribbon domain MID01_02695 PF14659 Phage integrase, N-terminal SAM-like domain MID01_02695 PF00589 Phage integrase family MID01_02700 PF14729 Domain of unknown function with cystatin-like fold (DUF4467) MID01_02710 PF18801 response regulator aspartate phosphatase H, N terminal MID01_02735 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH MID01_02735 PF04740 LXG domain of WXG superfamily MID01_02745 PF01381 Helix-turn-helix MID01_02755 PF00487 Fatty acid desaturase MID01_02760 PF00313 'Cold-shock' DNA-binding domain MID01_02765 PF02559 CarD-like/TRCF domain MID01_02770 PF00892 EamA-like transporter family MID01_02775 PF02311 AraC-like ligand binding domain MID01_02775 PF12833 Helix-turn-helix domain MID01_02780 PF00892 EamA-like transporter family MID01_02785 PF06445 GyrI-like small molecule binding domain MID01_02785 PF12833 Helix-turn-helix domain MID01_02790 PF00392 Bacterial regulatory proteins, gntR family MID01_02790 PF00155 Aminotransferase class I and II MID01_02795 PF07690 Major Facilitator Superfamily MID01_02805 PF08818 Domain of unknown function (DU1801) MID01_02815 PF00381 PTS HPr component phosphorylation site MID01_02820 PF00440 Bacterial regulatory proteins, tetR family MID01_02825 PF00892 EamA-like transporter family MID01_02830 PF00155 Aminotransferase class I and II MID01_02830 PF00392 Bacterial regulatory proteins, gntR family MID01_02835 PF01575 MaoC like domain MID01_02840 PF06821 Serine hydrolase MID01_02845 PF01638 HxlR-like helix-turn-helix MID01_02850 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 MID01_02850 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) MID01_02855 PF01638 HxlR-like helix-turn-helix MID01_02860 PF02525 Flavodoxin-like fold MID01_02865 PF07690 Major Facilitator Superfamily MID01_02870 PF16859 Tetracyclin repressor-like, C-terminal domain MID01_02870 PF00440 Bacterial regulatory proteins, tetR family MID01_02875 PF01022 Bacterial regulatory protein, arsR family MID01_02880 PF02040 Arsenical pump membrane protein MID01_02890 PF12746 GNAT acetyltransferase MID01_02895 PF00892 EamA-like transporter family MID01_02900 PF00392 Bacterial regulatory proteins, gntR family MID01_02900 PF00155 Aminotransferase class I and II MID01_02905 PF01613 Flavin reductase like domain MID01_02915 PF02627 Carboxymuconolactone decarboxylase family MID01_02930 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID01_02930 PF07730 Histidine kinase MID01_02935 PF00196 Bacterial regulatory proteins, luxR family MID01_02935 PF00072 Response regulator receiver domain MID01_02940 PF03176 MMPL family MID01_02945 PF12697 Alpha/beta hydrolase family MID01_02950 PF04474 Protein of unknown function (DUF554) MID01_02955 PF06445 GyrI-like small molecule binding domain MID01_02955 PF13411 MerR HTH family regulatory protein MID01_02960 PF01545 Cation efflux family MID01_02960 PF16916 Dimerisation domain of Zinc Transporter MID01_02965 PF00881 Nitroreductase family MID01_02970 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MID01_02975 PF07681 DoxX MID01_02980 PF00085 Thioredoxin MID01_02985 PF10676 Spore germination protein gerPA/gerPF MID01_02995 PF10676 Spore germination protein gerPA/gerPF MID01_03000 PF04239 Protein of unknown function (DUF421) MID01_03005 PF04239 Protein of unknown function (DUF421) MID01_03010 PF00011 Hsp20/alpha crystallin family MID01_03015 PF10676 Spore germination protein gerPA/gerPF MID01_03020 PF10676 Spore germination protein gerPA/gerPF MID01_03025 PF00440 Bacterial regulatory proteins, tetR family MID01_03030 PF13564 DoxX-like family MID01_03035 PF00583 Acetyltransferase (GNAT) family MID01_03040 PF12848 ABC transporter MID01_03040 PF00005 ABC transporter MID01_03045 PF00324 Amino acid permease MID01_03050 PF05163 DinB family MID01_03055 PF01047 MarR family MID01_03060 PF03176 MMPL family MID01_03065 PF00881 Nitroreductase family MID01_03070 PF01047 MarR family MID01_03075 PF07690 Major Facilitator Superfamily MID01_03080 PF01925 Sulfite exporter TauE/SafE MID01_03085 PF07729 FCD domain MID01_03085 PF00392 Bacterial regulatory proteins, gntR family MID01_03090 PF00704 Glycosyl hydrolases family 18 MID01_03090 PF01476 LysM domain MID01_03095 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase MID01_03100 PF08139 Prokaryotic membrane lipoprotein lipid attachment site MID01_03100 PF11611 Domain of unknown function (DUF4352) MID01_03105 PF00245 Alkaline phosphatase MID01_03110 PF08818 Domain of unknown function (DU1801) MID01_03115 PF16302 Domain of unknown function (DUF4944) MID01_03120 PF00583 Acetyltransferase (GNAT) family MID01_03125 PF01966 HD domain MID01_03130 PF07563 Protein of unknown function (DUF1541) MID01_03135 PF07690 Major Facilitator Superfamily MID01_03140 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit MID01_03145 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit MID01_03150 PF02378 Phosphotransferase system, EIIC MID01_03155 PF00232 Glycosyl hydrolase family 1 MID01_03160 PF07702 UTRA domain MID01_03160 PF00392 Bacterial regulatory proteins, gntR family MID01_03165 PF00480 ROK family MID01_03170 PF01238 Phosphomannose isomerase type I MID01_03175 PF02156 Glycosyl hydrolase family 26 MID01_03220 PF02769 AIR synthase related protein, C-terminal domain MID01_03220 PF00586 AIR synthase related protein, N-terminal domain MID01_03225 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE MID01_03230 PF00814 Glycoprotease family MID01_03235 PF00583 Acetyltransferase (GNAT) family MID01_03240 PF00814 Glycoprotease family MID01_03245 PF00005 ABC transporter MID01_03245 PF12848 ABC transporter MID01_03245 PF16326 ABC transporter C-terminal domain MID01_03250 PF01967 MoaC family MID01_03255 PF06971 Putative DNA-binding protein N-terminus MID01_03255 PF02629 CoA binding domain MID01_03260 PF02416 mttA/Hcf106 family MID01_03265 PF00902 Sec-independent protein translocase protein (TatC) MID01_03270 PF14146 Domain of unknown function (DUF4305) MID01_03275 PF02517 CPBP intramembrane metalloprotease MID01_03280 PF00166 Chaperonin 10 Kd subunit MID01_03285 PF00118 TCP-1/cpn60 chaperonin family MID01_03295 PF13176 Tetratricopeptide repeat MID01_03295 PF00931 NB-ARC domain MID01_03300 PF00107 Zinc-binding dehydrogenase MID01_03300 PF08240 Alcohol dehydrogenase GroES-like domain MID01_03310 PF00294 pfkB family carbohydrate kinase MID01_03315 PF04012 PspA/IM30 family MID01_03320 PF08271 TFIIB zinc-binding MID01_03325 PF04536 TPM domain MID01_03330 PF13421 SPFH domain-Band 7 family MID01_03335 PF07885 Ion channel MID01_03340 PF00083 Sugar (and other) transporter MID01_03345 PF08240 Alcohol dehydrogenase GroES-like domain MID01_03345 PF00107 Zinc-binding dehydrogenase MID01_03350 PF03330 Lytic transglycolase MID01_03355 PF07676 WD40-like Beta Propeller Repeat MID01_03365 PF14169 Cold-inducible protein YdjO MID01_03370 PF12697 Alpha/beta hydrolase family MID01_03375 PF13170 Protein of unknown function (DUF4003) MID01_03380 PF00394 Multicopper oxidase MID01_03380 PF07731 Multicopper oxidase MID01_03380 PF07732 Multicopper oxidase MID01_03385 PF00324 Amino acid permease MID01_03395 PF16916 Dimerisation domain of Zinc Transporter MID01_03395 PF01545 Cation efflux family MID01_03400 PF17863 AAA lid domain MID01_03400 PF07726 ATPase family associated with various cellular activities (AAA) MID01_03405 PF01882 Protein of unknown function DUF58 MID01_03410 PF01841 Transglutaminase-like superfamily MID01_03410 PF13559 Domain of unknown function (DUF4129) MID01_03410 PF11992 Domain of unknown function (DUF3488) MID01_03415 PF02540 NAD synthase MID01_03415 PF00117 Glutamine amidotransferase class-I MID01_03415 PF00958 GMP synthase C terminal domain MID01_03420 PF04542 Sigma-70 region 2 MID01_03420 PF04545 Sigma-70, region 4 MID01_03430 PF00860 Permease family MID01_03440 PF13076 Fur-regulated basic protein A MID01_03445 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) MID01_03450 PF14044 NETI protein MID01_03455 PF00731 AIR carboxylase MID01_03460 PF02222 ATP-grasp domain MID01_03460 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain MID01_03465 PF10397 Adenylosuccinate lyase C-terminus MID01_03465 PF00206 Lyase MID01_03470 PF01259 SAICAR synthetase MID01_03475 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase MID01_03485 PF00586 AIR synthase related protein, N-terminal domain MID01_03485 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain MID01_03485 PF02769 AIR synthase related protein, C-terminal domain MID01_03490 PF00156 Phosphoribosyl transferase domain MID01_03495 PF02769 AIR synthase related protein, C-terminal domain MID01_03495 PF00586 AIR synthase related protein, N-terminal domain MID01_03500 PF00551 Formyl transferase MID01_03505 PF02142 MGS-like domain MID01_03505 PF01808 AICARFT/IMPCHase bienzyme MID01_03510 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain MID01_03510 PF02843 Phosphoribosylglycinamide synthetase, C domain MID01_03510 PF02844 Phosphoribosylglycinamide synthetase, N domain MID01_03515 PF01037 Lrp/AsnC ligand binding domain MID01_03520 PF13520 Amino acid permease MID01_03525 PF11127 Protein of unknown function (DUF2892) MID01_03530 PF13382 Adenine deaminase C-terminal domain MID01_03530 PF01979 Amidohydrolase family MID01_03535 PF17479 Protein of unknown function (DUF3048) C-terminal domain MID01_03535 PF11258 Protein of unknown function (DUF3048) N-terminal domain MID01_03540 PF01371 Trp repressor protein MID01_03545 PF01645 Conserved region in glutamate synthase MID01_03550 PF01884 PcrB family MID01_03555 PF00580 UvrD/REP helicase N-terminal domain MID01_03555 PF13361 UvrD-like helicase C-terminal domain MID01_03560 PF12826 Helix-hairpin-helix motif MID01_03560 PF00533 BRCA1 C Terminus (BRCT) domain MID01_03560 PF01653 NAD-dependent DNA ligase adenylation domain MID01_03560 PF03120 NAD-dependent DNA ligase OB-fold domain MID01_03560 PF03119 NAD-dependent DNA ligase C4 zinc finger domain MID01_03565 PF07537 CamS sex pheromone cAM373 precursor MID01_03570 PF01636 Phosphotransferase enzyme family MID01_03575 PF02308 MgtC family MID01_03580 PF00474 Sodium:solute symporter family MID01_03585 PF02686 Glu-tRNAGln amidotransferase C subunit MID01_03590 PF01425 Amidase MID01_03595 PF02934 GatB/GatE catalytic domain MID01_03595 PF02637 GatB domain MID01_03605 PF00873 AcrB/AcrD/AcrF family MID01_03610 PF00781 Diacylglycerol kinase catalytic domain MID01_03615 PF01938 TRAM domain MID01_03615 PF05958 tRNA (Uracil-5-)-methyltransferase MID01_03625 PF04634 Protein of unknown function, DUF600 MID01_03630 PF04740 LXG domain of WXG superfamily MID01_03640 PF18801 response regulator aspartate phosphatase H, N terminal MID01_03640 PF13176 Tetratricopeptide repeat MID01_03650 PF01709 Transcriptional regulator MID01_03660 PF00440 Bacterial regulatory proteins, tetR family MID01_03665 PF12680 SnoaL-like domain MID01_03675 PF11007 Spore coat associated protein JA (CotJA) MID01_03680 PF12652 CotJB protein MID01_03685 PF05067 Manganese containing catalase MID01_03690 PF00583 Acetyltransferase (GNAT) family MID01_03695 PF14150 YesK-like protein MID01_03700 PF04854 Protein of unknown function, DUF624 MID01_03705 PF06580 Histidine kinase MID01_03705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID01_03705 PF02743 Cache domain MID01_03705 PF00672 HAMP domain MID01_03710 PF12833 Helix-turn-helix domain MID01_03710 PF00072 Response regulator receiver domain MID01_03715 PF13416 Bacterial extracellular solute-binding protein MID01_03720 PF00528 Binding-protein-dependent transport system inner membrane component MID01_03725 PF00528 Binding-protein-dependent transport system inner membrane component MID01_03730 PF07470 Glycosyl Hydrolase Family 88 MID01_03735 PF12833 Helix-turn-helix domain MID01_03740 PF13472 GDSL-like Lipase/Acylhydrolase family MID01_03745 PF09224 Domain of unknown function (DUF1961) MID01_03750 PF04854 Protein of unknown function, DUF624 MID01_03755 PF18370 Rhamnogalacturonan I lyases beta-sheet domain MID01_03760 PF01839 FG-GAP repeat MID01_03760 PF18370 Rhamnogalacturonan I lyases beta-sheet domain MID01_03765 PF00657 GDSL-like Lipase/Acylhydrolase MID01_03770 PF02449 Beta-galactosidase MID01_03770 PF08533 Beta-galactosidase C-terminal domain MID01_03770 PF08532 Beta-galactosidase trimerisation domain MID01_03780 PF01547 Bacterial extracellular solute-binding protein MID01_03785 PF00528 Binding-protein-dependent transport system inner membrane component MID01_03790 PF00528 Binding-protein-dependent transport system inner membrane component MID01_03795 PF02056 Family 4 glycosyl hydrolase MID01_03795 PF11975 Family 4 glycosyl hydrolase C-terminal domain MID01_03800 PF04239 Protein of unknown function (DUF421) MID01_03805 PF03992 Antibiotic biosynthesis monooxygenase MID01_03810 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MID01_03820 PF01740 STAS domain MID01_03825 PF10055 Uncharacterized small protein (DUF2292) MID01_03830 PF01027 Inhibitor of apoptosis-promoting Bax1 MID01_03835 PF00892 EamA-like transporter family MID01_03840 PF01047 MarR family MID01_03845 PF01494 FAD binding domain MID01_03855 PF13037 Domain of unknown function (DUF3898) MID01_03855 PF13039 Protein of unknown function (DUF3900) MID01_03865 PF00884 Sulfatase MID01_03870 PF00483 Nucleotidyl transferase MID01_03875 PF16363 GDP-mannose 4,6 dehydratase MID01_03880 PF03407 Nucleotide-diphospho-sugar transferase MID01_03885 PF00535 Glycosyl transferase family 2 MID01_03890 PF03407 Nucleotide-diphospho-sugar transferase MID01_03895 PF07690 Major Facilitator Superfamily MID01_03900 PF13419 Haloacid dehalogenase-like hydrolase MID01_03905 PF13520 Amino acid permease MID01_03910 PF00171 Aldehyde dehydrogenase family MID01_03915 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID01_03920 PF00005 ABC transporter MID01_03920 PF16326 ABC transporter C-terminal domain MID01_03920 PF12848 ABC transporter MID01_03925 PF10787 Uncharacterised protein from bacillus cereus group MID01_03930 PF13411 MerR HTH family regulatory protein MID01_03935 PF07690 Major Facilitator Superfamily MID01_03940 PF00082 Subtilase family MID01_03960 PF00005 ABC transporter MID01_03960 PF12848 ABC transporter MID01_03965 PF00270 DEAD/DEAH box helicase MID01_03965 PF00271 Helicase conserved C-terminal domain MID01_03970 PF00583 Acetyltransferase (GNAT) family MID01_03975 PF00107 Zinc-binding dehydrogenase MID01_03975 PF16884 N-terminal domain of oxidoreductase MID01_03980 PF00005 ABC transporter MID01_03985 PF01032 FecCD transport family MID01_03990 PF01032 FecCD transport family MID01_03995 PF01497 Periplasmic binding protein MID01_04000 PF11486 Protein of unknown function (DUF3212) MID01_04005 PF11181 Heat induced stress protein YflT MID01_04010 PF00544 Pectate lyase MID01_04015 PF00939 Sodium:sulfate symporter transmembrane region MID01_04020 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain MID01_04020 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID01_04025 PF12431 Transcriptional regulator MID01_04025 PF08279 HTH domain MID01_04025 PF00072 Response regulator receiver domain MID01_04030 PF03401 Tripartite tricarboxylate transporter family receptor MID01_04035 PF03600 Citrate transporter MID01_04040 PF00753 Metallo-beta-lactamase superfamily MID01_04045 PF02898 Nitric oxide synthase, oxygenase domain MID01_04050 PF00708 Acylphosphatase MID01_04055 PF03473 MOSC domain MID01_04055 PF03475 3-alpha domain MID01_04060 PF11121 Protein of unknown function (DUF2639) MID01_04070 PF11588 Protein of unknown function (DUF3243) MID01_04075 PF00557 Metallopeptidase family M24 MID01_04080 PF00367 phosphotransferase system, EIIB MID01_04080 PF02378 Phosphotransferase system, EIIC MID01_04085 PF00884 Sulfatase MID01_04095 PF09350 Domain of unknown function (DUF1992) MID01_04100 PF01235 Sodium:alanine symporter family MID01_04105 PF03845 Spore germination protein MID01_04115 PF05504 Spore germination B3/ GerAC like, C-terminal MID01_04120 PF03323 Bacillus/Clostridium GerA spore germination protein MID01_04125 PF00367 phosphotransferase system, EIIB MID01_04125 PF02378 Phosphotransferase system, EIIC MID01_04130 PF16657 Maltogenic Amylase, C-terminal domain MID01_04130 PF00128 Alpha amylase, catalytic domain MID01_04135 PF00392 Bacterial regulatory proteins, gntR family MID01_04135 PF07702 UTRA domain MID01_04140 PF00881 Nitroreductase family MID01_04145 PF00149 Calcineurin-like phosphoesterase MID01_04145 PF02872 5'-nucleotidase, C-terminal domain MID01_04150 PF01965 DJ-1/PfpI family MID01_04155 PF07690 Major Facilitator Superfamily MID01_04160 PF06569 Protein of unknown function (DUF1128) MID01_04165 PF01451 Low molecular weight phosphotyrosine protein phosphatase MID01_04175 PF03631 Virulence factor BrkB MID01_04180 PF07690 Major Facilitator Superfamily MID01_04185 PF01699 Sodium/calcium exchanger protein MID01_04190 PF14167 YfkD-like protein MID01_04195 PF00924 Mechanosensitive ion channel MID01_04200 PF04055 Radical SAM superfamily MID01_04200 PF08756 YfkB-like domain MID01_04210 PF01522 Polysaccharide deacetylase MID01_04215 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MID01_04215 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase MID01_04220 PF01544 CorA-like Mg2+ transporter protein MID01_04225 PF00730 HhH-GPD superfamily base excision DNA repair protein MID01_04230 PF05958 tRNA (Uracil-5-)-methyltransferase MID01_04230 PF01938 TRAM domain MID01_04235 PF14118 YfzA-like protein MID01_04240 PF01207 Dihydrouridine synthase (Dus) MID01_04255 PF00676 Dehydrogenase E1 component MID01_04260 PF02780 Transketolase, C-terminal domain MID01_04260 PF02779 Transketolase, pyrimidine binding domain MID01_04265 PF02817 e3 binding domain MID01_04265 PF00364 Biotin-requiring enzyme MID01_04265 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) MID01_04270 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID01_04270 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MID01_04275 PF01590 GAF domain MID01_04275 PF02954 Bacterial regulatory protein, Fis family MID01_04275 PF00158 Sigma-54 interaction domain MID01_04280 PF08141 Small acid-soluble spore protein H family MID01_04285 PF02694 Uncharacterised BCR, YnfA/UPF0060 family MID01_04290 PF17353 Family of unknown function (DUF5381) MID01_04295 PF17353 Family of unknown function (DUF5381) MID01_04310 PF06013 Proteins of 100 residues with WXG MID01_04315 PF02056 Family 4 glycosyl hydrolase MID01_04315 PF11975 Family 4 glycosyl hydrolase C-terminal domain MID01_04320 PF01380 SIS domain MID01_04320 PF01418 Helix-turn-helix domain, rpiR family MID01_04325 PF02378 Phosphotransferase system, EIIC MID01_04325 PF00367 phosphotransferase system, EIIB MID01_04330 PF12708 Pectate lyase superfamily protein MID01_04330 PF11962 Peptidase_G2, IMC autoproteolytic cleavage domain MID01_04335 PF00005 ABC transporter MID01_04335 PF00664 ABC transporter transmembrane region MID01_04340 PF00664 ABC transporter transmembrane region MID01_04340 PF00005 ABC transporter MID01_04345 PF07681 DoxX MID01_04350 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MID01_04355 PF07730 Histidine kinase MID01_04360 PF00196 Bacterial regulatory proteins, luxR family MID01_04360 PF00072 Response regulator receiver domain MID01_04365 PF00005 ABC transporter MID01_04380 PF10400 Virulence activator alpha C-term MID01_04380 PF03551 Transcriptional regulator PadR-like family MID01_04385 PF01674 Lipase (class 2) MID01_04390 PF01757 Acyltransferase family MID01_04395 PF12867 DinB superfamily MID01_04400 PF07690 Major Facilitator Superfamily MID01_04405 PF01047 MarR family MID01_04410 PF03706 Lysylphosphatidylglycerol synthase TM region MID01_04410 PF09924 Uncharacterised conserved protein (DUF2156) MID01_04415 PF01497 Periplasmic binding protein MID01_04420 PF01032 FecCD transport family MID01_04425 PF01032 FecCD transport family MID01_04430 PF02567 Phenazine biosynthesis-like protein MID01_04435 PF00881 Nitroreductase family MID01_04440 PF14151 YfhD-like protein MID01_04445 PF14152 YfhE-like protein MID01_04450 PF01370 NAD dependent epimerase/dehydratase family MID01_04450 PF08338 Domain of unknown function (DUF1731) MID01_04455 PF02631 RecX family MID01_04460 PF08838 Protein of unknown function (DUF1811) MID01_04465 PF07690 Major Facilitator Superfamily MID01_04470 PF08176 Small acid-soluble spore protein K family MID01_04475 PF14043 WVELL protein MID01_04480 PF08239 Bacterial SH3 domain MID01_04485 PF13630 SdpI/YhfL protein family MID01_04490 PF00561 alpha/beta hydrolase fold MID01_04495 PF00535 Glycosyl transferase family 2 MID01_04500 PF09586 Bacterial membrane protein YfhO MID01_04505 PF04307 LexA-binding, inner membrane-associated putative hydrolase MID01_04510 PF00730 HhH-GPD superfamily base excision DNA repair protein MID01_04510 PF14815 NUDIX domain MID01_04525 PF04259 Small, acid-soluble spore protein, gamma-type MID01_04530 PF14182 YgaB-like protein MID01_04535 PF04167 Protein of unknown function (DUF402) MID01_04540 PF00664 ABC transporter transmembrane region MID01_04540 PF00005 ABC transporter MID01_04545 PF06081 Aromatic acid exporter family member 1 MID01_04550 PF00202 Aminotransferase class-III MID01_04555 PF00578 AhpC/TSA family MID01_04560 PF01475 Ferric uptake regulator family MID01_04565 PF11023 Zinc-ribbon containing domain MID01_04570 PF18576 Helix-turn-helix domain MID01_04570 PF14540 Nucleotidyltransferase-like MID01_04670 PF07070 SpoOM protein MID01_04680 PF07875 Coat F domain MID01_04690 PF01964 Radical SAM ThiC family MID01_04690 PF13667 ThiC-associated domain MID01_04700 PF13040 Fur-regulated basic protein B MID01_04705 PF06628 Catalase-related immune-responsive MID01_04705 PF00199 Catalase MID01_04710 PF00005 ABC transporter MID01_04715 PF09084 NMT1/THI5 like MID01_04720 PF00528 Binding-protein-dependent transport system inner membrane component MID01_04725 PF00296 Luciferase-like monooxygenase MID01_04735 PF00253 Ribosomal protein S14p/S29e MID01_04745 PF01381 Helix-turn-helix MID01_04760 PF08331 Domain of unknown function (DUF1730) MID01_04765 PF12671 Putative amidase domain MID01_04770 PF00588 SpoU rRNA Methylase family MID01_04775 PF13171 Protein of unknown function (DUF4004) MID01_04780 PF04519 Polymer-forming cytoskeletal MID01_04790 PF06798 PrkA serine protein kinase C-terminal domain MID01_04790 PF08298 PrkA AAA domain MID01_04795 PF04285 Protein of unknown function (DUF444) MID01_04800 PF01047 MarR family MID01_04810 PF07690 Major Facilitator Superfamily MID01_04815 PF03358 NADPH-dependent FMN reductase MID01_04835 PF00392 Bacterial regulatory proteins, gntR family MID01_04840 PF00005 ABC transporter MID01_04845 PF00005 ABC transporter MID01_04850 PF12679 ABC-2 family transporter protein MID01_04855 PF00313 'Cold-shock' DNA-binding domain MID01_04860 PF03180 NLPA lipoprotein MID01_04865 PF00990 Diguanylate cyclase, GGDEF domain MID01_04865 PF07694 5TMR of 5TMR-LYT MID01_04870 PF00375 Sodium:dicarboxylate symporter family MID01_04890 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) MID01_04900 PF07875 Coat F domain MID01_04905 PF02872 5'-nucleotidase, C-terminal domain MID01_04905 PF00746 LPXTG cell wall anchor motif MID01_04905 PF00149 Calcineurin-like phosphoesterase MID01_04905 PF00565 Staphylococcal nuclease homologue MID01_04910 PF04203 Sortase domain MID01_04915 PF01479 S4 domain MID01_04915 PF00849 RNA pseudouridylate synthase MID01_04920 PF17326 Family of unknown function (DUF5365) MID01_04925 PF00571 CBS domain MID01_04930 PF13419 Haloacid dehalogenase-like hydrolase MID01_04935 PF00795 Carbon-nitrogen hydrolase MID01_04935 PF00583 Acetyltransferase (GNAT) family MID01_04940 PF00202 Aminotransferase class-III MID01_04945 PF04309 Glycerol-3-phosphate responsive antiterminator MID01_04950 PF00230 Major intrinsic protein MID01_04955 PF02782 FGGY family of carbohydrate kinases, C-terminal domain MID01_04955 PF00370 FGGY family of carbohydrate kinases, N-terminal domain MID01_04960 PF01266 FAD dependent oxidoreductase MID01_04960 PF16901 C-terminal domain of alpha-glycerophosphate oxidase MID01_04965 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MID01_04965 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MID01_04965 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MID01_04965 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MID01_04970 PF07730 Histidine kinase MID01_04970 PF13185 GAF domain MID01_04975 PF00196 Bacterial regulatory proteins, luxR family MID01_04975 PF00072 Response regulator receiver domain MID01_04980 PF03358 NADPH-dependent FMN reductase MID01_04985 PF14148 YhdB-like protein MID01_04990 PF13028 Protein of unknown function (DUF3889) MID01_04995 PF00877 NlpC/P60 family MID01_04995 PF01476 LysM domain MID01_05000 PF02082 Transcriptional regulator MID01_05005 PF05552 Conserved TM helix MID01_05010 PF04293 SpoVR like protein MID01_05015 PF00245 Alkaline phosphatase MID01_05020 PF00877 NlpC/P60 family MID01_05020 PF01476 LysM domain MID01_05025 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID01_05025 PF03466 LysR substrate binding domain MID01_05030 PF00285 Citrate synthase, C-terminal domain MID01_05040 PF13520 Amino acid permease MID01_05045 PF00209 Sodium:neurotransmitter symporter family MID01_05050 PF00155 Aminotransferase class I and II MID01_05050 PF00392 Bacterial regulatory proteins, gntR family MID01_05055 PF00583 Acetyltransferase (GNAT) family MID01_05060 PF17453 Sigma-M inhibitor MID01_05065 PF13800 Sigma factor regulator N-terminal MID01_05065 PF13791 Sigma factor regulator C-terminal MID01_05070 PF04542 Sigma-70 region 2 MID01_05070 PF08281 Sigma-70, region 4 MID01_05075 PF00248 Aldo/keto reductase family MID01_05080 PF01553 Acyltransferase MID01_05085 PF01595 Cyclin M transmembrane N-terminal domain MID01_05085 PF03471 Transporter associated domain MID01_05085 PF00571 CBS domain MID01_05090 PF13411 MerR HTH family regulatory protein MID01_05095 PF00155 Aminotransferase class I and II MID01_05100 PF01595 Cyclin M transmembrane N-terminal domain MID01_05100 PF03471 Transporter associated domain MID01_05100 PF00571 CBS domain MID01_05105 PF02537 CrcB-like protein, Camphor Resistance (CrcB) MID01_05110 PF02537 CrcB-like protein, Camphor Resistance (CrcB) MID01_05115 PF03009 Glycerophosphoryl diester phosphodiesterase family MID01_05120 PF17444 Uncharacterized YhdX-like MID01_05125 PF00924 Mechanosensitive ion channel MID01_05130 PF02146 Sir2 family MID01_05135 PF01522 Polysaccharide deacetylase MID01_05140 PF01063 Amino-transferase class IV MID01_05145 PF03553 Na+/H+ antiporter family MID01_05150 PF00582 Universal stress protein family MID01_05160 PF00005 ABC transporter MID01_05160 PF00664 ABC transporter transmembrane region MID01_05165 PF00664 ABC transporter transmembrane region MID01_05165 PF00005 ABC transporter MID01_05170 PF13460 NAD(P)H-binding MID01_05180 PF00269 Small, acid-soluble spore proteins, alpha/beta type MID01_05185 PF17277 Family of unknown function (DUF5342) MID01_05190 PF14398 YheC/D like ATP-grasp MID01_05195 PF14398 YheC/D like ATP-grasp MID01_05200 PF04286 Protein of unknown function (DUF445) MID01_05205 PF06133 Control of competence regulator ComK, YlbF/YmcA MID01_05210 PF08713 DNA alkylation repair enzyme MID01_05220 PF04055 Radical SAM superfamily MID01_05225 PF00999 Sodium/hydrogen exchanger family MID01_05230 PF02080 TrkA-C domain MID01_05240 PF00378 Enoyl-CoA hydratase/isomerase MID01_05245 PF14120 YhzD-like protein MID01_05250 PF00005 ABC transporter MID01_05250 PF13732 Domain of unknown function (DUF4162) MID01_05260 PF00149 Calcineurin-like phosphoesterase MID01_05265 PF13514 AAA domain MID01_05270 PF01966 HD domain MID01_05275 PF14147 Sporulation protein YhaL MID01_05285 PF09680 Family of unknown function MID01_05290 PF09680 Family of unknown function MID01_05300 PF11667 Putative zincin peptidase MID01_05305 PF08963 Protein of unknown function (DUF1878) MID01_05310 PF01047 MarR family MID01_05315 PF12732 YtxH-like protein MID01_05325 PF17099 Tryptophan transporter TrpP MID01_05330 PF00266 Aminotransferase class-V MID01_05335 PF01230 HIT domain MID01_05340 PF00005 ABC transporter MID01_05345 PF05975 Bacterial ABC transporter protein EcsB MID01_05350 PF12787 EcsC protein family MID01_05355 PF01546 Peptidase family M20/M25/M40 MID01_05355 PF07687 Peptidase dimerisation domain MID01_05370 PF03992 Antibiotic biosynthesis monooxygenase MID01_05375 PF00912 Transglycosylase MID01_05375 PF00905 Penicillin binding protein transpeptidase domain MID01_05380 PF01208 Uroporphyrinogen decarboxylase (URO-D) MID01_05385 PF00762 Ferrochelatase MID01_05390 PF01593 Flavin containing amine oxidoreductase MID01_05395 PF17932 Tetracyclin repressor-like, C-terminal domain MID01_05395 PF00440 Bacterial regulatory proteins, tetR family MID01_05405 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III MID01_05405 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal MID01_05410 PF10086 YhfC intramembrane metalloprotease MID01_05420 PF05343 M42 glutamyl aminopeptidase MID01_05425 PF04266 ASCH domain MID01_05430 PF00375 Sodium:dicarboxylate symporter family MID01_05435 PF14149 YhfH-like protein MID01_05440 PF12706 Beta-lactamase superfamily domain MID01_05445 PF03099 Biotin/lipoate A/B protein ligase family MID01_05445 PF10437 Bacterial lipoate protein ligase C-terminus MID01_05450 PF13460 NAD(P)H-binding MID01_05455 PF13193 AMP-binding enzyme C-terminal domain MID01_05455 PF00501 AMP-binding enzyme MID01_05465 PF16491 CAAX prenyl protease N-terminal, five membrane helices MID01_05465 PF01435 Peptidase family M48 MID01_05470 PF00082 Subtilase family MID01_05470 PF05922 Peptidase inhibitor I9 MID01_05475 PF00583 Acetyltransferase (GNAT) family MID01_05480 PF08240 Alcohol dehydrogenase GroES-like domain MID01_05480 PF00107 Zinc-binding dehydrogenase MID01_05485 PF01497 Periplasmic binding protein MID01_05490 PF00300 Histidine phosphatase superfamily (branch 1) MID01_05495 PF02803 Thiolase, C-terminal domain MID01_05495 PF00108 Thiolase, N-terminal domain MID01_05500 PF00501 AMP-binding enzyme MID01_05500 PF13193 AMP-binding enzyme C-terminal domain MID01_05505 PF02632 BioY family MID01_05510 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID01_05515 PF00355 Rieske [2Fe-2S] domain MID01_05515 PF01266 FAD dependent oxidoreductase MID01_05525 PF08858 IDEAL domain MID01_05530 PF06338 ComK protein MID01_05540 PF05901 Excalibur calcium-binding domain MID01_05545 PF00474 Sodium:solute symporter family MID01_05550 PF11755 Protein of unknown function (DUF3311) MID01_05560 PF09335 SNARE associated Golgi protein MID01_05565 PF10502 Signal peptidase, peptidase S26 MID01_05570 PF01494 FAD binding domain MID01_05575 PF01047 MarR family MID01_05585 PF07690 Major Facilitator Superfamily MID01_05590 PF02894 Oxidoreductase family, C-terminal alpha/beta domain MID01_05590 PF01408 Oxidoreductase family, NAD-binding Rossmann fold MID01_05595 PF05116 Sucrose-6F-phosphate phosphohydrolase MID01_05600 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family MID01_05605 PF00356 Bacterial regulatory proteins, lacI family MID01_05610 PF05145 Transition state regulatory protein AbrB MID01_05615 PF07690 Major Facilitator Superfamily MID01_05620 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MID01_05620 PF12793 Sugar transport-related sRNA regulator N-term MID01_05625 PF03860 Domain of Unknown Function (DUF326) MID01_05630 PF02915 Rubrerythrin MID01_05635 PF13361 UvrD-like helicase C-terminal domain MID01_05635 PF12705 PD-(D/E)XK nuclease superfamily MID01_05640 PF00580 UvrD/REP helicase N-terminal domain MID01_05640 PF13361 UvrD-like helicase C-terminal domain MID01_05640 PF12705 PD-(D/E)XK nuclease superfamily MID01_05645 PF12320 Type 5 capsule protein repressor C-terminal domain MID01_05645 PF00149 Calcineurin-like phosphoesterase MID01_05650 PF13476 AAA domain MID01_05660 PF10676 Spore germination protein gerPA/gerPF MID01_05665 PF10970 Spore germination protein GerPE MID01_05675 PF10737 Spore germination protein GerPC MID01_05680 PF10803 Spore germination GerPB MID01_05685 PF10676 Spore germination protein gerPA/gerPF MID01_05690 PF09388 Spo0E like sporulation regulatory protein MID01_05695 PF08757 CotH kinase protein MID01_05700 PF01557 Fumarylacetoacetate (FAA) hydrolase family MID01_05705 PF07457 Protein of unknown function (DUF1516) MID01_05710 PF00082 Subtilase family MID01_05710 PF17936 Bacterial Ig domain MID01_05715 PF10949 Protein of unknown function (DUF2777) MID01_05720 PF13537 Glutamine amidotransferase domain MID01_05720 PF00733 Asparagine synthase MID01_05725 PF05163 DinB family MID01_05735 PF01554 MatE MID01_05740 PF02311 AraC-like ligand binding domain MID01_05740 PF12833 Helix-turn-helix domain MID01_05745 PF00356 Bacterial regulatory proteins, lacI family MID01_05750 PF02894 Oxidoreductase family, C-terminal alpha/beta domain MID01_05750 PF01408 Oxidoreductase family, NAD-binding Rossmann fold MID01_05755 PF05163 DinB family MID01_05760 PF01810 LysE type translocator MID01_05765 PF00155 Aminotransferase class I and II MID01_05765 PF00392 Bacterial regulatory proteins, gntR family MID01_05770 PF13599 Pentapeptide repeats (9 copies) MID01_05775 PF08386 TAP-like protein MID01_05775 PF00561 alpha/beta hydrolase fold MID01_05785 PF14306 PUA-like domain MID01_05785 PF01747 ATP-sulfurylase MID01_05790 PF01507 Phosphoadenosine phosphosulfate reductase family MID01_05795 PF04029 2-phosphosulpholactate phosphatase MID01_05800 PF02679 (2R)-phospho-3-sulfolactate synthase (ComA) MID01_05805 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 MID01_05810 PF13378 Enolase C-terminal domain-like MID01_05810 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MID01_05815 PF07690 Major Facilitator Superfamily MID01_05820 PF18014 Acetyltransferase (GNAT) domain MID01_05820 PF13673 Acetyltransferase (GNAT) domain MID01_05825 PF13673 Acetyltransferase (GNAT) domain MID01_05830 PF02219 Methylenetetrahydrofolate reductase MID01_05830 PF02574 Homocysteine S-methyltransferase MID01_05835 PF04461 Protein of unknown function (DUF520) MID01_05855 PF17418 Sporulation delaying protein SdpA MID01_05860 PF03551 Transcriptional regulator PadR-like family MID01_05870 PF12650 Domain of unknown function (DUF3784) MID01_05875 PF02868 Thermolysin metallopeptidase, alpha-helical domain MID01_05875 PF01447 Thermolysin metallopeptidase, catalytic domain MID01_05875 PF07504 Fungalysin/Thermolysin Propeptide Motif MID01_05875 PF03413 Peptidase propeptide and YPEB domain MID01_05880 PF02645 Uncharacterised protein, DegV family COG1307 MID01_05885 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 MID01_05885 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) MID01_05890 PF12690 Intracellular proteinase inhibitor MID01_05895 PF12758 Protein of unknown function (DUF3813) MID01_05910 PF00326 Prolyl oligopeptidase family MID01_05915 PF01883 Iron-sulfur cluster assembly protein MID01_05925 PF01565 FAD binding domain MID01_05930 PF07690 Major Facilitator Superfamily MID01_05935 PF02774 Semialdehyde dehydrogenase, dimerisation domain MID01_05935 PF01118 Semialdehyde dehydrogenase, NAD binding domain MID01_05940 PF01960 ArgJ family MID01_05945 PF00696 Amino acid kinase family MID01_05950 PF00202 Aminotransferase class-III MID01_05955 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain MID01_05955 PF00117 Glutamine amidotransferase class-I MID01_05960 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MID01_05960 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MID01_05965 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain MID01_05965 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MID01_05970 PF14168 YjzC-like protein MID01_05975 PF11151 Protein of unknown function (DUF2929) MID01_05990 PF02608 ABC transporter substrate-binding protein PnrA-like MID01_05995 PF10815 ComZ MID01_06005 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III MID01_06005 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal MID01_06010 PF00109 Beta-ketoacyl synthase, N-terminal domain MID01_06010 PF02801 Beta-ketoacyl synthase, C-terminal domain MID01_06015 PF10026 Predicted Zn-dependent protease (DUF2268) MID01_06020 PF00005 ABC transporter MID01_06020 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MID01_06025 PF00005 ABC transporter MID01_06025 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MID01_06030 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MID01_06035 PF00528 Binding-protein-dependent transport system inner membrane component MID01_06040 PF00528 Binding-protein-dependent transport system inner membrane component MID01_06040 PF12911 N-terminal TM domain of oligopeptide transport permease C MID01_06045 PF12227 Protein of unknown function (DUF3603) MID01_06050 PF00579 tRNA synthetases class I (W and Y) MID01_06055 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MID01_06060 PF00528 Binding-protein-dependent transport system inner membrane component MID01_06065 PF00528 Binding-protein-dependent transport system inner membrane component MID01_06065 PF12911 N-terminal TM domain of oligopeptide transport permease C MID01_06070 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MID01_06070 PF00005 ABC transporter MID01_06075 PF00005 ABC transporter MID01_06075 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MID01_06080 PF07690 Major Facilitator Superfamily MID01_06085 PF13508 Acetyltransferase (GNAT) domain MID01_06090 PF03960 ArsC family MID01_06095 PF03741 Integral membrane protein TerC family MID01_06105 PF05389 Negative regulator of genetic competence (MecA) MID01_06115 PF06054 Competence protein CoiA-like family MID01_06120 PF08439 Oligopeptidase F MID01_06120 PF01432 Peptidase family M3 MID01_06135 PF01152 Bacterial-like globin MID01_06140 PF01464 Transglycosylase SLT domain MID01_06145 PF01928 CYTH domain MID01_06155 PF04607 Region found in RelA / SpoT proteins MID01_06160 PF01513 ATP-NAD kinase MID01_06165 PF00849 RNA pseudouridylate synthase MID01_06170 PF00149 Calcineurin-like phosphoesterase MID01_06175 PF02254 TrkA-N domain MID01_06175 PF00999 Sodium/hydrogen exchanger family MID01_06175 PF02080 TrkA-C domain MID01_06180 PF03070 TENA/THI-4/PQQC family MID01_06185 PF02581 Thiamine monophosphate synthase MID01_06190 PF01266 FAD dependent oxidoreductase MID01_06195 PF02597 ThiS family MID01_06200 PF05690 Thiazole biosynthesis protein ThiG MID01_06205 PF00899 ThiF family MID01_06210 PF08543 Phosphomethylpyrimidine kinase MID01_06220 PF14153 Spore coat protein CotO MID01_06225 PF10612 Spore coat protein Z MID01_06230 PF10612 Spore coat protein Z MID01_06235 PF07552 Spore Coat Protein X and V domain MID01_06245 PF07552 Spore Coat Protein X and V domain MID01_06250 PF07098 Protein of unknown function (DUF1360) MID01_06265 PF14069 Stage VI sporulation protein F MID01_06270 PF00580 UvrD/REP helicase N-terminal domain MID01_06270 PF13361 UvrD-like helicase C-terminal domain MID01_06280 PF13673 Acetyltransferase (GNAT) domain MID01_06290 PF00756 Putative esterase MID01_06295 PF01053 Cys/Met metabolism PLP-dependent enzyme MID01_06300 PF01053 Cys/Met metabolism PLP-dependent enzyme MID01_06305 PF13302 Acetyltransferase (GNAT) domain MID01_06310 PF05684 Protein of unknown function (DUF819) MID01_06325 PF04740 LXG domain of WXG superfamily MID01_06325 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH MID01_06345 PF08863 YolD-like protein MID01_06375 PF03992 Antibiotic biosynthesis monooxygenase MID01_06385 PF02368 Bacterial Ig-like domain (group 2) MID01_06390 PF08279 HTH domain MID01_06390 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 MID01_06390 PF00874 PRD domain MID01_06390 PF05043 Mga helix-turn-helix domain MID01_06395 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 MID01_06395 PF02378 Phosphotransferase system, EIIC MID01_06395 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit MID01_06400 PF01238 Phosphomannose isomerase type I MID01_06405 PF11208 Protein of unknown function (DUF2992) MID01_06410 PF13302 Acetyltransferase (GNAT) domain MID01_06420 PF04073 Aminoacyl-tRNA editing domain MID01_06425 PF13783 Domain of unknown function (DUF4177) MID01_06430 PF14154 Domain of unknown function (DUF4306) MID01_06435 PF01040 UbiA prenyltransferase family MID01_06445 PF01522 Polysaccharide deacetylase MID01_06445 PF13739 Deacetylase PdaC MID01_06445 PF11738 Protein of unknown function (DUF3298) MID01_06450 PF10901 Protein of unknown function (DUF2690) MID01_06455 PF14070 Putative motility protein MID01_06460 PF10026 Predicted Zn-dependent protease (DUF2268) MID01_06465 PF10990 Protein of unknown function (DUF2809) MID01_06470 PF14172 Domain of unknown function (DUF4309) MID01_06475 PF00384 Molybdopterin oxidoreductase MID01_06475 PF04879 Molybdopterin oxidoreductase Fe4S4 domain MID01_06475 PF12838 4Fe-4S dicluster domain MID01_06475 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region MID01_06475 PF01568 Molydopterin dinucleotide binding domain MID01_06480 PF07849 Protein of unknown function (DUF1641) MID01_06485 PF11611 Domain of unknown function (DUF4352) MID01_06490 PF00293 NUDIX domain MID01_06500 PF00067 Cytochrome P450 MID01_06505 PF04101 Glycosyltransferase family 28 C-terminal domain MID01_06525 PF02602 Uroporphyrinogen-III synthase HemD MID01_06530 PF03649 Uncharacterised protein family (UPF0014) MID01_06535 PF00005 ABC transporter MID01_06540 PF13536 Putative multidrug resistance efflux transporter MID01_06550 PF07849 Protein of unknown function (DUF1641) MID01_06555 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID01_06560 PF02614 Glucuronate isomerase MID01_06570 PF02615 Malate/L-lactate dehydrogenase MID01_06575 PF08240 Alcohol dehydrogenase GroES-like domain MID01_06575 PF00107 Zinc-binding dehydrogenase MID01_06580 PF03786 D-mannonate dehydratase (UxuA) MID01_06585 PF00106 short chain dehydrogenase MID01_06590 PF07690 Major Facilitator Superfamily MID01_06595 PF00356 Bacterial regulatory proteins, lacI family MID01_06600 PF08125 Mannitol dehydrogenase C-terminal domain MID01_06600 PF01232 Mannitol dehydrogenase Rossmann domain MID01_06605 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus MID01_06605 PF08666 SAF domain MID01_06610 PF01925 Sulfite exporter TauE/SafE MID01_06615 PF05163 DinB family MID01_06620 PF00004 ATPase family associated with various cellular activities (AAA) MID01_06625 PF18801 response regulator aspartate phosphatase H, N terminal MID01_06635 PF03795 YCII-related domain MID01_06640 PF01471 Putative peptidoglycan binding domain MID01_06640 PF01476 LysM domain MID01_06640 PF01510 N-acetylmuramoyl-L-alanine amidase MID01_06645 PF08000 Bacterial PH domain MID01_06650 PF05908 Poly-gamma-glutamate hydrolase MID01_06655 PF05067 Manganese containing catalase MID01_06660 PF06114 IrrE N-terminal-like domain MID01_06665 PF01381 Helix-turn-helix MID01_06680 PF01695 IstB-like ATP binding protein MID01_06695 PF17356 Phage-like element PBSX protein XtrA MID01_06700 PF08281 Sigma-70, region 4 MID01_06705 PF03592 Terminase small subunit MID01_06705 PF10668 Phage terminase small subunit MID01_06710 PF17288 Terminase RNAseH like domain MID01_06710 PF04466 Phage terminase large subunit MID01_06715 PF04860 Phage portal protein MID01_06720 PF14550 Putative phage serine protease XkdF MID01_06725 PF05065 Phage capsid family MID01_06730 PF11436 Protein of unknown function (DUF3199) MID01_06735 PF12206 Domain of unknown function (DUF3599) MID01_06740 PF04883 Bacteriophage HK97-gp10, putative tail-component MID01_06755 PF04984 Phage tail sheath protein subtilisin-like domain MID01_06755 PF17482 Phage tail sheath C-terminal domain MID01_06755 PF17481 Phage tail sheath protein beta-sandwich domain MID01_06760 PF09393 Phage tail tube protein MID01_06765 PF08890 Phage XkdN-like tail assembly chaperone protein, TAC MID01_06775 PF01464 Transglycosylase SLT domain MID01_06780 PF01476 LysM domain MID01_06790 PF10844 Protein of unknown function (DUF2577) MID01_06795 PF10934 Protein of unknown function (DUF2634) MID01_06800 PF04865 Baseplate J-like protein MID01_06805 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) MID01_06820 PF09636 XkdW protein MID01_06825 PF09693 Phage uncharacterised protein (Phage_XkdX) MID01_06835 PF10779 Haemolysin XhlA MID01_06840 PF04688 SPP1 phage holin MID01_06845 PF01471 Putative peptidoglycan binding domain MID01_06845 PF01476 LysM domain MID01_06845 PF01510 N-acetylmuramoyl-L-alanine amidase MID01_06855 PF14185 Antitoxin SpoIISB, type II toxin-antitoxin system MID01_06860 PF14171 Toxin SpoIISA, type II toxin-antitoxin system MID01_06865 PF01384 Phosphate transporter family MID01_06870 PF01865 Protein of unknown function DUF47 MID01_06875 PF13520 Amino acid permease MID01_06880 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MID01_06890 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase MID01_06895 PF00535 Glycosyl transferase family 2 MID01_06905 PF13180 PDZ domain MID01_06910 PF14748 Pyrroline-5-carboxylate reductase dimerisation MID01_06910 PF03807 NADP oxidoreductase coenzyme F420-dependent MID01_06915 PF04951 D-aminopeptidase MID01_06920 PF00528 Binding-protein-dependent transport system inner membrane component MID01_06925 PF12911 N-terminal TM domain of oligopeptide transport permease C MID01_06925 PF00528 Binding-protein-dependent transport system inner membrane component MID01_06930 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MID01_06930 PF00005 ABC transporter MID01_06935 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MID01_06940 PF17676 LD-carboxypeptidase C-terminal domain MID01_06940 PF02016 LD-carboxypeptidase N-terminal domain MID01_06945 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MID01_06945 PF13378 Enolase C-terminal domain-like MID01_06950 PF00877 NlpC/P60 family MID01_06955 PF00005 ABC transporter MID01_06955 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MID01_06960 PF10282 Lactonase, 7-bladed beta-propeller MID01_06970 PF03061 Thioesterase superfamily MID01_06975 PF00970 Oxidoreductase FAD-binding domain MID01_06975 PF00175 Oxidoreductase NAD-binding domain MID01_06975 PF00042 Globin MID01_06985 PF04239 Protein of unknown function (DUF421) MID01_06990 PF12867 DinB superfamily MID01_06995 PF13302 Acetyltransferase (GNAT) domain MID01_07000 PF00893 Small Multidrug Resistance protein MID01_07005 PF00893 Small Multidrug Resistance protein MID01_07010 PF01842 ACT domain MID01_07010 PF00551 Formyl transferase MID01_07015 PF00696 Amino acid kinase family MID01_07015 PF01472 PUA domain MID01_07020 PF00171 Aldehyde dehydrogenase family MID01_07025 PF02566 OsmC-like protein MID01_07030 PF01047 MarR family MID01_07035 PF02566 OsmC-like protein MID01_07045 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MID01_07050 PF01717 Cobalamin-independent synthase, Catalytic domain MID01_07050 PF08267 Cobalamin-independent synthase, N-terminal domain MID01_07055 PF00082 Subtilase family MID01_07060 PF01740 STAS domain MID01_07065 PF02361 Cobalt transport protein MID01_07070 PF00005 ABC transporter MID01_07075 PF09819 ABC-type cobalt transport system, permease component MID01_07080 PF07615 YKOF-related Family MID01_07085 PF00486 Transcriptional regulatory protein, C terminal MID01_07085 PF00072 Response regulator receiver domain MID01_07090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID01_07090 PF00672 HAMP domain MID01_07090 PF00512 His Kinase A (phospho-acceptor) domain MID01_07095 PF03413 Peptidase propeptide and YPEB domain MID01_07100 PF03413 Peptidase propeptide and YPEB domain MID01_07105 PF11132 Transcriptional regulator protein (SplA) MID01_07110 PF03448 MgtE intracellular N domain MID01_07110 PF01769 Divalent cation transporter MID01_07110 PF00571 CBS domain MID01_07115 PF13411 MerR HTH family regulatory protein MID01_07130 PF01047 MarR family MID01_07135 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase MID01_07145 PF00149 Calcineurin-like phosphoesterase MID01_07155 PF00535 Glycosyl transferase family 2 MID01_07160 PF01068 ATP dependent DNA ligase domain MID01_07165 PF02735 Ku70/Ku80 beta-barrel domain MID01_07170 PF00563 EAL domain MID01_07170 PF00990 Diguanylate cyclase, GGDEF domain MID01_07170 PF03707 Bacterial signalling protein N terminal repeat MID01_07175 PF09335 SNARE associated Golgi protein MID01_07180 PF03741 Integral membrane protein TerC family MID01_07185 PF04542 Sigma-70 region 2 MID01_07190 PF12791 Anti-sigma factor N-terminus MID01_07195 PF00269 Small, acid-soluble spore proteins, alpha/beta type MID01_07200 PF08876 Domain of unknown function (DUF1836) MID01_07205 PF01435 Peptidase family M48 MID01_07210 PF02386 Cation transport protein MID01_07225 PF01757 Acyltransferase family MID01_07230 PF13188 PAS domain MID01_07230 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID01_07230 PF13426 PAS domain MID01_07230 PF00989 PAS fold MID01_07230 PF00512 His Kinase A (phospho-acceptor) domain MID01_07235 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain MID01_07235 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain MID01_07245 PF01008 Initiation factor 2 subunit family MID01_07250 PF01636 Phosphotransferase enzyme family MID01_07255 PF00795 Carbon-nitrogen hydrolase MID01_07260 PF00155 Aminotransferase class I and II MID01_07265 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain MID01_07265 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain MID01_07275 PF00596 Class II Aldolase and Adducin N-terminal domain MID01_07280 PF03079 ARD/ARD' family MID01_07285 PF06803 Protein of unknown function (DUF1232) MID01_07290 PF09388 Spo0E like sporulation regulatory protein MID01_07300 PF02743 Cache domain MID01_07300 PF00512 His Kinase A (phospho-acceptor) domain MID01_07300 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID01_07305 PF01047 MarR family MID01_07310 PF13677 Membrane MotB of proton-channel complex MotA/MotB MID01_07310 PF00691 OmpA family MID01_07315 PF01618 MotA/TolQ/ExbB proton channel family MID01_07320 PF07724 AAA domain (Cdc48 subfamily) MID01_07320 PF17871 AAA lid domain MID01_07320 PF10431 C-terminal, D2-small domain, of ClpB protein MID01_07320 PF00004 ATPase family associated with various cellular activities (AAA) MID01_07330 PF06508 Queuosine biosynthesis protein QueC MID01_07335 PF01242 6-pyruvoyl tetrahydropterin synthase MID01_07340 PF04055 Radical SAM superfamily MID01_07345 PF14489 QueF-like protein MID01_07350 PF01638 HxlR-like helix-turn-helix MID01_07360 PF01476 LysM domain MID01_07365 PF01476 LysM domain MID01_07370 PF00704 Glycosyl hydrolases family 18 MID01_07375 PF11514 Protein of unknown function (DUF3219) MID01_07380 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) MID01_07390 PF07486 Cell Wall Hydrolase MID01_07395 PF01943 Polysaccharide biosynthesis protein MID01_07400 PF00578 AhpC/TSA family MID01_07415 PF00557 Metallopeptidase family M24 MID01_07415 PF01321 Creatinase/Prolidase N-terminal domain MID01_07420 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family MID01_07420 PF00356 Bacterial regulatory proteins, lacI family MID01_07425 PF00874 PRD domain MID01_07425 PF03123 CAT RNA binding domain MID01_07430 PF02378 Phosphotransferase system, EIIC MID01_07430 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 MID01_07430 PF00367 phosphotransferase system, EIIB MID01_07435 PF00381 PTS HPr component phosphorylation site MID01_07440 PF00391 PEP-utilising enzyme, mobile domain MID01_07440 PF02896 PEP-utilising enzyme, TIM barrel domain MID01_07440 PF05524 PEP-utilising enzyme, N-terminal MID01_07445 PF11132 Transcriptional regulator protein (SplA) MID01_07455 PF00583 Acetyltransferase (GNAT) family MID01_07460 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID01_07460 PF00672 HAMP domain MID01_07460 PF02743 Cache domain MID01_07465 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MID01_07465 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase MID01_07475 PF00188 Cysteine-rich secretory protein family MID01_07480 PF00905 Penicillin binding protein transpeptidase domain MID01_07480 PF03717 Penicillin-binding Protein dimerisation domain MID01_07485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID01_07485 PF00512 His Kinase A (phospho-acceptor) domain MID01_07485 PF00989 PAS fold MID01_07485 PF08447 PAS fold MID01_07490 PF00155 Aminotransferase class I and II MID01_07500 PF01584 CheW-like domain MID01_07500 PF00072 Response regulator receiver domain MID01_07505 PF14177 YkyB-like protein MID01_07510 PF07690 Major Facilitator Superfamily MID01_07515 PF01476 LysM domain MID01_07515 PF03734 L,D-transpeptidase catalytic domain MID01_07520 PF10518 TAT (twin-arginine translocation) pathway signal sequence MID01_07520 PF00149 Calcineurin-like phosphoesterase MID01_07530 PF00563 EAL domain MID01_07530 PF10388 EAL-domain associated signalling protein domain MID01_07535 PF08796 Protein of unknown function (DUF1797) MID01_07540 PF04308 Ribonuclease H-like MID01_07545 PF14156 Antirepressor AbbA MID01_07555 PF03466 LysR substrate binding domain MID01_07555 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID01_07560 PF00258 Flavodoxin MID01_07570 PF00258 Flavodoxin MID01_07575 PF14602 Hexapeptide repeat of succinyl-transferase MID01_07575 PF00132 Bacterial transferase hexapeptide (six repeats) MID01_07575 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal MID01_07580 PF01546 Peptidase family M20/M25/M40 MID01_07580 PF07687 Peptidase dimerisation domain MID01_07585 PF03698 Uncharacterised protein family (UPF0180) MID01_07590 PF00924 Mechanosensitive ion channel MID01_07595 PF10417 C-terminal domain of 1-Cys peroxiredoxin MID01_07595 PF00578 AhpC/TSA family MID01_07600 PF00578 AhpC/TSA family MID01_07615 PF12804 MobA-like NTP transferase domain MID01_07620 PF00899 ThiF family MID01_07625 PF03453 MoeA N-terminal region (domain I and II) MID01_07625 PF03454 MoeA C-terminal region (domain IV) MID01_07625 PF00994 Probable molybdopterin binding domain MID01_07630 PF03205 Molybdopterin guanine dinucleotide synthesis protein B MID01_07635 PF02391 MoaE protein MID01_07640 PF02597 ThiS family MID01_07645 PF00664 ABC transporter transmembrane region MID01_07645 PF00005 ABC transporter MID01_07650 PF00664 ABC transporter transmembrane region MID01_07650 PF00005 ABC transporter MID01_07655 PF04893 Yip1 domain MID01_07660 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MID01_07665 PF00005 ABC transporter MID01_07670 PF12704 MacB-like periplasmic core domain MID01_07670 PF02687 FtsX-like permease family MID01_07675 PF08220 DeoR-like helix-turn-helix domain MID01_07675 PF00455 DeoR C terminal sensor domain MID01_07680 PF00294 pfkB family carbohydrate kinase MID01_07685 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit MID01_07685 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 MID01_07690 PF10502 Signal peptidase, peptidase S26 MID01_07700 PF12848 ABC transporter MID01_07700 PF00005 ABC transporter MID01_07705 PF02558 Ketopantoate reductase PanE/ApbA MID01_07705 PF08546 Ketopantoate reductase PanE/ApbA C terminal MID01_07710 PF02073 Thermophilic metalloprotease (M29) MID01_07715 PF17447 Uncharacterized YkpC-like MID01_07725 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin MID01_07725 PF18277 AbrB C-terminal domain MID01_07730 PF00989 PAS fold MID01_07730 PF00512 His Kinase A (phospho-acceptor) domain MID01_07730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID01_07735 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like MID01_07740 PF02254 TrkA-N domain MID01_07740 PF02080 TrkA-C domain MID01_07745 PF01979 Amidohydrolase family MID01_07745 PF13382 Adenine deaminase C-terminal domain MID01_07750 PF17770 Ribonuclease J C-terminal domain MID01_07750 PF00753 Metallo-beta-lactamase superfamily MID01_07750 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain MID01_07755 PF07288 Protein of unknown function (DUF1447) MID01_07765 PF01327 Polypeptide deformylase MID01_07775 PF10368 Putative cell-wall binding lipoprotein MID01_07780 PF00676 Dehydrogenase E1 component MID01_07785 PF02780 Transketolase, C-terminal domain MID01_07785 PF02779 Transketolase, pyrimidine binding domain MID01_07790 PF00364 Biotin-requiring enzyme MID01_07790 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) MID01_07790 PF02817 e3 binding domain MID01_07795 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID01_07795 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MID01_07805 PF13790 SR1 protein MID01_07810 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain MID01_07810 PF01276 Orn/Lys/Arg decarboxylase, major domain MID01_07815 PF05256 Uncharacterised protein family (UPF0223) MID01_07820 PF06335 Protein of unknown function (DUF1054) MID01_07830 PF00459 Inositol monophosphatase family MID01_07835 PF00583 Acetyltransferase (GNAT) family MID01_07840 PF04072 Leucine carboxyl methyltransferase MID01_07845 PF02868 Thermolysin metallopeptidase, alpha-helical domain MID01_07845 PF03413 Peptidase propeptide and YPEB domain MID01_07845 PF07504 Fungalysin/Thermolysin Propeptide Motif MID01_07845 PF01447 Thermolysin metallopeptidase, catalytic domain MID01_07865 PF13490 Putative zinc-finger MID01_07875 PF17259 Family of unknown function (DUF5325) MID01_07880 PF00009 Elongation factor Tu GTP binding domain MID01_07880 PF14492 Elongation Factor G, domain II MID01_07880 PF00679 Elongation factor G C-terminus MID01_07880 PF03144 Elongation factor Tu domain 2 MID01_07885 PF14036 YlaH-like protein MID01_07890 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) MID01_07895 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) MID01_07900 PF13638 PIN domain MID01_07900 PF02562 PhoH-like protein MID01_07910 PF04960 Glutaminase MID01_07915 PF07408 Protein of unknown function (DUF1507) MID01_07920 PF01098 Cell cycle protein MID01_07925 PF02785 Biotin carboxylase C-terminal domain MID01_07925 PF00289 Biotin carboxylase, N-terminal domain MID01_07925 PF00364 Biotin-requiring enzyme MID01_07925 PF00682 HMGL-like MID01_07925 PF02436 Conserved carboxylase domain MID01_07925 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MID01_07930 PF02628 Cytochrome oxidase assembly protein MID01_07935 PF01040 UbiA prenyltransferase family MID01_07940 PF00034 Cytochrome c MID01_07940 PF02790 Cytochrome C oxidase subunit II, transmembrane domain MID01_07940 PF00116 Cytochrome C oxidase subunit II, periplasmic domain MID01_07945 PF00115 Cytochrome C and Quinol oxidase polypeptide I MID01_07950 PF00510 Cytochrome c oxidase subunit III MID01_07955 PF03626 Prokaryotic Cytochrome C oxidase subunit IV MID01_07960 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) MID01_07965 PF08868 YugN-like family MID01_07970 PF00571 CBS domain MID01_07975 PF00188 Cysteine-rich secretory protein family MID01_07975 PF14504 CAP-associated N-terminal MID01_07980 PF14071 Putative coat protein MID01_07985 PF14003 YlbE-like protein MID01_07990 PF06133 Control of competence regulator ComK, YlbF/YmcA MID01_07995 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) MID01_08005 PF01467 Cytidylyltransferase-like MID01_08010 PF07670 Nucleoside recognition MID01_08015 PF01734 Patatin-like phospholipase MID01_08020 PF13180 PDZ domain MID01_08020 PF05362 Lon protease (S16) C-terminal proteolytic domain MID01_08025 PF05636 HIGH Nucleotidyl Transferase MID01_08035 PF02620 Large ribosomal RNA subunit accumulation protein YceD MID01_08040 PF01783 Ribosomal L32p protein family MID01_08050 PF00583 Acetyltransferase (GNAT) family MID01_08055 PF02558 Ketopantoate reductase PanE/ApbA MID01_08055 PF08546 Ketopantoate reductase PanE/ApbA C terminal MID01_08060 PF10079 Bacillithiol biosynthesis BshC MID01_08065 PF02381 MraZ protein, putative antitoxin-like MID01_08070 PF01795 MraW methylase family MID01_08080 PF00905 Penicillin binding protein transpeptidase domain MID01_08080 PF03717 Penicillin-binding Protein dimerisation domain MID01_08080 PF03793 PASTA domain MID01_08085 PF00905 Penicillin binding protein transpeptidase domain MID01_08085 PF03717 Penicillin-binding Protein dimerisation domain MID01_08085 PF03793 PASTA domain MID01_08090 PF01225 Mur ligase family, catalytic domain MID01_08090 PF02875 Mur ligase family, glutamate ligase domain MID01_08090 PF08245 Mur ligase middle domain MID01_08095 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 MID01_08095 PF00953 Glycosyl transferase family 4 MID01_08100 PF08245 Mur ligase middle domain MID01_08100 PF02875 Mur ligase family, glutamate ligase domain MID01_08105 PF01098 Cell cycle protein MID01_08110 PF03033 Glycosyltransferase family 28 N-terminal domain MID01_08110 PF04101 Glycosyltransferase family 28 C-terminal domain MID01_08115 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain MID01_08115 PF01565 FAD binding domain MID01_08120 PF08478 POTRA domain, FtsQ-type MID01_08125 PF05949 Bacterial protein of unknown function (DUF881) MID01_08130 PF05949 Bacterial protein of unknown function (DUF881) MID01_08135 PF06947 Protein of unknown function (DUF1290) MID01_08140 PF02491 SHS2 domain inserted in FTSA MID01_08145 PF12327 FtsZ family, C-terminal domain MID01_08145 PF00091 Tubulin/FtsZ family, GTPase domain MID01_08150 PF00082 Subtilase family MID01_08150 PF05922 Peptidase inhibitor I9 MID01_08155 PF03419 Sporulation factor SpoIIGA MID01_08160 PF04545 Sigma-70, region 4 MID01_08160 PF04542 Sigma-70 region 2 MID01_08165 PF04542 Sigma-70 region 2 MID01_08165 PF04539 Sigma-70 region 3 MID01_08165 PF04545 Sigma-70, region 4 MID01_08170 PF00005 ABC transporter MID01_08175 PF01546 Peptidase family M20/M25/M40 MID01_08175 PF07687 Peptidase dimerisation domain MID01_08180 PF05239 PRC-barrel domain MID01_08185 PF02578 Multi-copper polyphenol oxidoreductase laccase MID01_08190 PF01168 Alanine racemase, N-terminal domain MID01_08195 PF04472 Cell division protein SepF MID01_08200 PF02325 YGGT family MID01_08205 PF17774 Putative RNA-binding domain in YlmH MID01_08205 PF01479 S4 domain MID01_08210 PF05103 DivIVA protein MID01_08215 PF08264 Anticodon-binding domain of tRNA MID01_08215 PF00133 tRNA synthetases class I (I, L, M and V) MID01_08220 PF01258 Prokaryotic dksA/traR C4-type zinc finger MID01_08225 PF01252 Signal peptidase (SPase) II MID01_08230 PF01479 S4 domain MID01_08230 PF00849 RNA pseudouridylate synthase MID01_08235 PF00156 Phosphoribosyl transferase domain MID01_08240 PF00860 Permease family MID01_08245 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain MID01_08245 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MID01_08250 PF01979 Amidohydrolase family MID01_08255 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain MID01_08255 PF00117 Glutamine amidotransferase class-I MID01_08260 PF02142 MGS-like domain MID01_08260 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MID01_08260 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MID01_08265 PF00175 Oxidoreductase NAD-binding domain MID01_08265 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B MID01_08270 PF01180 Dihydroorotate dehydrogenase MID01_08275 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family MID01_08280 PF00156 Phosphoribosyl transferase domain MID01_08285 PF01507 Phosphoadenosine phosphosulfate reductase family MID01_08290 PF01384 Phosphate transporter family MID01_08295 PF14306 PUA-like domain MID01_08295 PF01747 ATP-sulfurylase MID01_08305 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MID01_08310 PF01903 CbiX MID01_08320 PF05670 NFACT protein RNA binding domain MID01_08325 PF00690 Cation transporter/ATPase, N-terminus MID01_08325 PF00689 Cation transporting ATPase, C-terminus MID01_08330 PF08340 Domain of unknown function (DUF1732) MID01_08330 PF03755 YicC-like family, N-terminal region MID01_08335 PF04025 Domain of unknown function (DUF370) MID01_08340 PF00625 Guanylate kinase MID01_08345 PF01192 RNA polymerase Rpb6 MID01_08350 PF02441 Flavoprotein MID01_08350 PF04127 DNA / pantothenate metabolism flavoprotein MID01_08355 PF18319 PriA DNA helicase Cys-rich region (CRR) domain MID01_08355 PF18074 Primosomal protein N C-terminal domain MID01_08355 PF04851 Type III restriction enzyme, res subunit MID01_08355 PF17764 3′ DNA-binding domain (3′BD) MID01_08355 PF00271 Helicase conserved C-terminal domain MID01_08360 PF01327 Polypeptide deformylase MID01_08365 PF02911 Formyl transferase, C-terminal domain MID01_08365 PF00551 Formyl transferase MID01_08370 PF01029 NusB family MID01_08370 PF01189 16S rRNA methyltransferase RsmB/F MID01_08375 PF04055 Radical SAM superfamily MID01_08385 PF00069 Protein kinase domain MID01_08385 PF03793 PASTA domain MID01_08390 PF16745 RsgA N-terminal domain MID01_08390 PF03193 RsgA GTPase MID01_08395 PF00834 Ribulose-phosphate 3 epimerase family MID01_08400 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain MID01_08400 PF04263 Thiamin pyrophosphokinase, catalytic domain MID01_08405 PF08183 Stage V sporulation protein family MID01_08410 PF00830 Ribosomal L28 family MID01_08415 PF03780 Asp23 family, cell envelope-related function MID01_08420 PF13684 Dihydroxyacetone kinase family MID01_08420 PF02734 DAK2 domain MID01_08425 PF01842 ACT domain MID01_08425 PF03315 Serine dehydratase beta chain MID01_08430 PF03313 Serine dehydratase alpha chain MID01_08435 PF00270 DEAD/DEAH box helicase MID01_08435 PF00271 Helicase conserved C-terminal domain MID01_08435 PF17191 RecG wedge domain MID01_08440 PF03061 Thioesterase superfamily MID01_08445 PF02504 Fatty acid synthesis protein MID01_08450 PF00698 Acyl transferase domain MID01_08460 PF00550 Phosphopantetheine attachment site MID01_08465 PF14622 Ribonuclease-III-like MID01_08465 PF00035 Double-stranded RNA binding motif MID01_08470 PF02463 RecF/RecN/SMC N terminal domain MID01_08470 PF06470 SMC proteins Flexible Hinge Domain MID01_08475 PF02881 SRP54-type protein, helical bundle domain MID01_08475 PF00448 SRP54-type protein, GTPase domain MID01_08480 PF02369 Bacterial Ig-like domain (group 1) MID01_08485 PF04297 Putative helix-turn-helix protein, YlxM / p13 like MID01_08490 PF02978 Signal peptide binding domain MID01_08490 PF02881 SRP54-type protein, helical bundle domain MID01_08490 PF00448 SRP54-type protein, GTPase domain MID01_08495 PF00886 Ribosomal protein S16 MID01_08505 PF11068 YlqD protein MID01_08510 PF01782 RimM N-terminal domain MID01_08510 PF05239 PRC-barrel domain MID01_08515 PF01746 tRNA (Guanine-1)-methyltransferase MID01_08520 PF01245 Ribosomal protein L19 MID01_08525 PF01926 50S ribosome-binding GTPase MID01_08530 PF01351 Ribonuclease HII MID01_08540 PF01312 FlhB HrpN YscU SpaS Family MID01_08545 PF00549 CoA-ligase MID01_08545 PF08442 ATP-grasp domain MID01_08550 PF00549 CoA-ligase MID01_08550 PF02629 CoA binding domain MID01_08555 PF02481 DNA recombination-mediator protein A MID01_08560 PF01751 Toprim domain MID01_08560 PF01396 Topoisomerase DNA binding C4 zinc finger MID01_08560 PF01131 DNA topoisomerase MID01_08565 PF01134 Glucose inhibited division protein A MID01_08570 PF02899 Phage integrase, N-terminal SAM-like domain MID01_08570 PF00589 Phage integrase family MID01_08575 PF00227 Proteasome subunit MID01_08580 PF00004 ATPase family associated with various cellular activities (AAA) MID01_08580 PF07724 AAA domain (Cdc48 subfamily) MID01_08580 PF10431 C-terminal, D2-small domain, of ClpB protein MID01_08585 PF06018 CodY GAF-like domain MID01_08585 PF08222 CodY helix-turn-helix domain MID01_08590 PF00460 Flagella basal body rod protein MID01_08595 PF00460 Flagella basal body rod protein MID01_08595 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MID01_08600 PF02049 Flagellar hook-basal body complex protein FliE MID01_08605 PF08345 Flagellar M-ring protein C-terminal MID01_08605 PF01514 Secretory protein of YscJ/FliF family MID01_08610 PF14842 FliG N-terminal domain MID01_08610 PF14841 FliG middle domain MID01_08610 PF01706 FliG C-terminal domain MID01_08615 PF02108 Flagellar assembly protein FliH MID01_08620 PF18269 T3SS EscN ATPase C-terminal domain MID01_08620 PF02874 ATP synthase alpha/beta family, beta-barrel domain MID01_08620 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MID01_08625 PF02050 Flagellar FliJ protein MID01_08630 PF03448 MgtE intracellular N domain MID01_08635 PF02120 Flagellar hook-length control protein FliK MID01_08640 PF03963 Flagellar hook capping protein - N-terminal region MID01_08645 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MID01_08645 PF00460 Flagella basal body rod protein MID01_08650 PF06289 Flagellar and Swarming motility proteins MID01_08655 PF03748 Flagellar basal body-associated protein FliL MID01_08660 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term MID01_08660 PF02154 Flagellar motor switch protein FliM MID01_08670 PF00072 Response regulator receiver domain MID01_08675 PF04347 Flagellar biosynthesis protein, FliO MID01_08680 PF00813 FliP family MID01_08685 PF01313 Bacterial export proteins, family 3 MID01_08690 PF01311 Bacterial export proteins, family 1 MID01_08695 PF01312 FlhB HrpN YscU SpaS Family MID01_08700 PF00771 FHIPEP family MID01_08705 PF00448 SRP54-type protein, GTPase domain MID01_08710 PF10609 NUBPL iron-transfer P-loop NTPase MID01_08715 PF01339 CheB methylesterase MID01_08715 PF00072 Response regulator receiver domain MID01_08720 PF07194 P2 response regulator binding domain MID01_08720 PF01627 Hpt domain MID01_08720 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID01_08720 PF01584 CheW-like domain MID01_08720 PF02895 Signal transducing histidine kinase, homodimeric domain MID01_08725 PF01584 CheW-like domain MID01_08730 PF04509 CheC-like family MID01_08735 PF03975 CheD chemotactic sensory transduction MID01_08740 PF04539 Sigma-70 region 3 MID01_08740 PF04542 Sigma-70 region 2 MID01_08740 PF04545 Sigma-70, region 4 MID01_08750 PF00318 Ribosomal protein S2 MID01_08755 PF00889 Elongation factor TS MID01_08760 PF00696 Amino acid kinase family MID01_08765 PF01765 Ribosome recycling factor MID01_08770 PF01255 Putative undecaprenyl diphosphate synthase MID01_08780 PF13288 DXP reductoisomerase C-terminal domain MID01_08780 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase MID01_08780 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain MID01_08785 PF02163 Peptidase family M50 MID01_08785 PF17820 PDZ domain MID01_08790 PF04073 Aminoacyl-tRNA editing domain MID01_08790 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MID01_08790 PF03129 Anticodon binding domain MID01_08795 PF14579 Helix-hairpin-helix motif MID01_08795 PF07733 Bacterial DNA polymerase III alpha NTPase domain MID01_08795 PF00929 Exonuclease MID01_08795 PF14480 DNA polymerase III polC-type N-terminus I MID01_08795 PF02811 PHP domain MID01_08795 PF17657 Bacterial DNA polymerase III alpha subunit finger domain MID01_08795 PF11490 DNA polymerase III polC-type N-terminus II MID01_08805 PF04738 Lantibiotic dehydratase, N terminus MID01_08805 PF14028 Lantibiotic biosynthesis dehydratase C-term MID01_08810 PF00005 ABC transporter MID01_08815 PF05147 Lanthionine synthetase C-like protein MID01_08820 PF17384 RimP C-terminal SH3 domain MID01_08820 PF02576 RimP N-terminal domain MID01_08825 PF13184 NusA-like KH domain MID01_08825 PF00575 S1 RNA binding domain MID01_08825 PF08529 NusA N-terminal domain MID01_08830 PF04296 Protein of unknown function (DUF448) MID01_08835 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family MID01_08840 PF04760 Translation initiation factor IF-2, N-terminal region MID01_08840 PF00009 Elongation factor Tu GTP binding domain MID01_08840 PF11987 Translation-initiation factor 2 MID01_08845 PF04456 Protein of unknown function (DUF503) MID01_08850 PF02033 Ribosome-binding factor A MID01_08855 PF01509 TruB family pseudouridylate synthase (N terminal domain) MID01_08855 PF16198 tRNA pseudouridylate synthase B C-terminal domain MID01_08860 PF06574 FAD synthetase MID01_08860 PF01687 Riboflavin kinase MID01_08865 PF00312 Ribosomal protein S15 MID01_08870 PF00013 KH domain MID01_08870 PF01138 3' exoribonuclease family, domain 1 MID01_08870 PF03725 3' exoribonuclease family, domain 2 MID01_08870 PF00575 S1 RNA binding domain MID01_08870 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain MID01_08875 PF01522 Polysaccharide deacetylase MID01_08880 PF05193 Peptidase M16 inactive domain MID01_08880 PF00675 Insulinase (Peptidase family M16) MID01_08885 PF05239 PRC-barrel domain MID01_08890 PF16924 Dipicolinate synthase subunit A N-terminal domain MID01_08890 PF01262 Alanine dehydrogenase/PNT, C-terminal domain MID01_08895 PF02441 Flavoprotein MID01_08900 PF02774 Semialdehyde dehydrogenase, dimerisation domain MID01_08900 PF01118 Semialdehyde dehydrogenase, NAD binding domain MID01_08905 PF00696 Amino acid kinase family MID01_08905 PF13840 ACT domain MID01_08910 PF00701 Dihydrodipicolinate synthetase family MID01_08915 PF17770 Ribonuclease J C-terminal domain MID01_08915 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain MID01_08915 PF00753 Metallo-beta-lactamase superfamily MID01_08920 PF00574 Clp protease MID01_08925 PF14035 YlzJ-like protein MID01_08930 PF01580 FtsK/SpoIIIE family MID01_08930 PF17854 FtsK alpha domain MID01_08930 PF09397 Ftsk gamma domain MID01_08935 PF00392 Bacterial regulatory proteins, gntR family MID01_08935 PF07702 UTRA domain MID01_08940 PF07690 Major Facilitator Superfamily MID01_08945 PF05193 Peptidase M16 inactive domain MID01_08950 PF00675 Insulinase (Peptidase family M16) MID01_08950 PF05193 Peptidase M16 inactive domain MID01_08960 PF11588 Protein of unknown function (DUF3243) MID01_08965 PF11868 Protein of unknown function (DUF3388) MID01_08970 PF13464 Domain of unknown function (DUF4115) MID01_08975 PF01066 CDP-alcohol phosphatidyltransferase MID01_08980 PF02464 Competence-damaged protein MID01_08980 PF18146 Damage-inducible protein CinA KH domain MID01_08980 PF00994 Probable molybdopterin binding domain MID01_08985 PF00154 recA bacterial DNA recombination protein MID01_08990 PF00144 Beta-lactamase MID01_08995 PF01966 HD domain MID01_08995 PF00013 KH domain MID01_08995 PF12072 Domain of unknown function (DUF3552) MID01_09000 PF13277 YmdB-like protein MID01_09005 PF04232 Stage V sporulation protein S (SpoVS) MID01_09010 PF00107 Zinc-binding dehydrogenase MID01_09010 PF08240 Alcohol dehydrogenase GroES-like domain MID01_09015 PF00155 Aminotransferase class I and II MID01_09020 PF00919 Uncharacterized protein family UPF0004 MID01_09020 PF01938 TRAM domain MID01_09020 PF04055 Radical SAM superfamily MID01_09025 PF06133 Control of competence regulator ComK, YlbF/YmcA MID01_09030 PF10628 Outer spore coat protein E (CotE) MID01_09035 PF00488 MutS domain V MID01_09035 PF05190 MutS family domain IV MID01_09035 PF05192 MutS domain III MID01_09035 PF05188 MutS domain II MID01_09035 PF01624 MutS domain I MID01_09040 PF08676 MutL C terminal dimerisation domain MID01_09040 PF01119 DNA mismatch repair protein, C-terminal domain MID01_09045 PF14184 Regulatory protein YrvL MID01_09055 PF00440 Bacterial regulatory proteins, tetR family MID01_09055 PF13977 BetI-type transcriptional repressor, C-terminal MID01_09060 PF00753 Metallo-beta-lactamase superfamily MID01_09070 PF00698 Acyl transferase domain MID01_09075 PF00698 Acyl transferase domain MID01_09080 PF00698 Acyl transferase domain MID01_09080 PF03060 Nitronate monooxygenase MID01_09085 PF00550 Phosphopantetheine attachment site MID01_09090 PF02801 Beta-ketoacyl synthase, C-terminal domain MID01_09090 PF00109 Beta-ketoacyl synthase, N-terminal domain MID01_09095 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal MID01_09095 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal MID01_09100 PF00378 Enoyl-CoA hydratase/isomerase MID01_09105 PF00378 Enoyl-CoA hydratase/isomerase MID01_09110 PF00501 AMP-binding enzyme MID01_09110 PF02801 Beta-ketoacyl synthase, C-terminal domain MID01_09110 PF16197 Ketoacyl-synthetase C-terminal extension MID01_09110 PF08659 KR domain MID01_09110 PF00550 Phosphopantetheine attachment site MID01_09110 PF14765 Polyketide synthase dehydratase MID01_09110 PF13193 AMP-binding enzyme C-terminal domain MID01_09110 PF00109 Beta-ketoacyl synthase, N-terminal domain MID01_09110 PF00668 Condensation domain MID01_09115 PF08659 KR domain MID01_09115 PF14765 Polyketide synthase dehydratase MID01_09115 PF00109 Beta-ketoacyl synthase, N-terminal domain MID01_09115 PF16197 Ketoacyl-synthetase C-terminal extension MID01_09115 PF00550 Phosphopantetheine attachment site MID01_09115 PF02801 Beta-ketoacyl synthase, C-terminal domain MID01_09120 PF16197 Ketoacyl-synthetase C-terminal extension MID01_09120 PF00109 Beta-ketoacyl synthase, N-terminal domain MID01_09120 PF02801 Beta-ketoacyl synthase, C-terminal domain MID01_09120 PF08659 KR domain MID01_09120 PF00550 Phosphopantetheine attachment site MID01_09120 PF14765 Polyketide synthase dehydratase MID01_09120 PF08242 Methyltransferase domain MID01_09125 PF00550 Phosphopantetheine attachment site MID01_09125 PF08659 KR domain MID01_09125 PF02801 Beta-ketoacyl synthase, C-terminal domain MID01_09125 PF14765 Polyketide synthase dehydratase MID01_09125 PF00668 Condensation domain MID01_09125 PF13193 AMP-binding enzyme C-terminal domain MID01_09125 PF00501 AMP-binding enzyme MID01_09125 PF00109 Beta-ketoacyl synthase, N-terminal domain MID01_09125 PF16197 Ketoacyl-synthetase C-terminal extension MID01_09130 PF16197 Ketoacyl-synthetase C-terminal extension MID01_09130 PF00109 Beta-ketoacyl synthase, N-terminal domain MID01_09130 PF02801 Beta-ketoacyl synthase, C-terminal domain MID01_09130 PF00550 Phosphopantetheine attachment site MID01_09130 PF14765 Polyketide synthase dehydratase MID01_09130 PF00975 Thioesterase domain MID01_09130 PF08242 Methyltransferase domain MID01_09135 PF00067 Cytochrome P450 MID01_09150 PF00082 Subtilase family MID01_09160 PF05908 Poly-gamma-glutamate hydrolase MID01_09165 PF02566 OsmC-like protein MID01_09170 PF00893 Small Multidrug Resistance protein MID01_09175 PF00893 Small Multidrug Resistance protein MID01_09185 PF12788 YmaF family MID01_09195 PF17209 Hfq protein MID01_09200 PF14157 YmzC-like protein MID01_09210 PF07972 NrdI Flavodoxin like MID01_09215 PF08343 Ribonucleotide reductase N-terminal MID01_09215 PF02867 Ribonucleotide reductase, barrel domain MID01_09215 PF00317 Ribonucleotide reductase, all-alpha domain MID01_09220 PF00268 Ribonucleotide reductase, small chain MID01_09230 PF05036 Sporulation related domain MID01_09230 PF01520 N-acetylmuramoyl-L-alanine amidase MID01_09235 PF17866 AAA lid domain MID01_09235 PF00004 ATPase family associated with various cellular activities (AAA) MID01_09240 PF16360 GTP-binding GTPase Middle Region MID01_09240 PF13167 GTP-binding GTPase N-terminal MID01_09240 PF01926 50S ribosome-binding GTPase MID01_09245 PF06838 Methionine gamma-lyase MID01_09250 PF13411 MerR HTH family regulatory protein MID01_09255 PF03951 Glutamine synthetase, beta-Grasp domain MID01_09255 PF00120 Glutamine synthetase, catalytic domain MID01_09290 PF13302 Acetyltransferase (GNAT) domain MID01_09300 PF13021 Domain of unknown function (DUF3885) MID01_09330 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain MID01_09330 PF04616 Glycosyl hydrolases family 43 MID01_09335 PF00480 ROK family MID01_09340 PF01261 Xylose isomerase-like TIM barrel MID01_09345 PF02782 FGGY family of carbohydrate kinases, C-terminal domain MID01_09345 PF00370 FGGY family of carbohydrate kinases, N-terminal domain MID01_09360 PF00083 Sugar (and other) transporter MID01_09365 PF00842 Alanine racemase, C-terminal domain MID01_09365 PF01168 Alanine racemase, N-terminal domain MID01_09375 PF10903 Protein of unknown function (DUF2691) MID01_09380 PF00692 dUTPase MID01_09395 PF00303 Thymidylate synthase MID01_09405 PF15493 Domain of unknown function, YrpD MID01_09410 PF14037 YoqO-like protein MID01_09420 PF02416 mttA/Hcf106 family MID01_09435 PF08327 Activator of Hsp90 ATPase homolog 1-like protein MID01_09445 PF03323 Bacillus/Clostridium GerA spore germination protein MID01_09450 PF03845 Spore germination protein MID01_09455 PF05504 Spore germination B3/ GerAC like, C-terminal MID01_09465 PF13761 Domain of unknown function (DUF4166) MID01_09470 PF14158 YndJ-like protein MID01_09480 PF05908 Poly-gamma-glutamate hydrolase MID01_09485 PF10710 Protein of unknown function (DUF2512) MID01_09490 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MID01_09500 PF00717 Peptidase S24-like MID01_09500 PF01726 LexA DNA binding domain MID01_09505 PF01476 LysM domain MID01_09510 PF00239 Resolvase, N terminal domain MID01_09515 PF05979 Bacterial protein of unknown function (DUF896) MID01_09520 PF00456 Transketolase, thiamine diphosphate binding domain MID01_09520 PF02780 Transketolase, C-terminal domain MID01_09520 PF02779 Transketolase, pyrimidine binding domain MID01_09525 PF10747 Sporulation inhibitor of replication protein SirA MID01_09530 PF03672 Uncharacterised protein family (UPF0154) MID01_09535 PF09388 Spo0E like sporulation regulatory protein MID01_09540 PF02683 Cytochrome C biogenesis protein transmembrane region MID01_09545 PF00072 Response regulator receiver domain MID01_09550 PF07301 Protein of unknown function (DUF1453) MID01_09555 PF11084 Protein of unknown function (DUF2621) MID01_09565 PF08179 Small acid-soluble spore protein P family MID01_09575 PF00694 Aconitase C-terminal domain MID01_09575 PF00330 Aconitase family (aconitate hydratase) MID01_09580 PF00578 AhpC/TSA family MID01_09585 PF13040 Fur-regulated basic protein B MID01_09590 PF08177 Small acid-soluble spore protein N family MID01_09600 PF03061 Thioesterase superfamily MID01_09610 PF01521 Iron-sulphur cluster biosynthesis MID01_09615 PF02660 Glycerol-3-phosphate acyltransferase MID01_09620 PF13380 CoA binding domain MID01_09625 PF00204 DNA gyrase B MID01_09625 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID01_09625 PF01751 Toprim domain MID01_09625 PF00986 DNA gyrase B subunit, carboxyl terminus MID01_09630 PF03989 DNA gyrase C-terminal domain, beta-propeller MID01_09630 PF00521 DNA gyrase/topoisomerase IV, subunit A MID01_09640 PF01235 Sodium:alanine symporter family MID01_09645 PF00150 Cellulase (glycosyl hydrolase family 5) MID01_09645 PF00942 Cellulose binding domain MID01_09650 PF17452 Uncharacterized YnfE-like MID01_09655 PF17189 Glycosyl hydrolase family 30 beta sandwich domain MID01_09660 PF03422 Carbohydrate binding module (family 6) MID01_09660 PF04616 Glycosyl hydrolases family 43 MID01_09665 PF04138 GtrA-like protein MID01_09670 PF00483 Nucleotidyl transferase MID01_09675 PF09335 SNARE associated Golgi protein MID01_09685 PF01039 Carboxyl transferase domain MID01_09690 PF00378 Enoyl-CoA hydratase/isomerase MID01_09695 PF00682 HMGL-like MID01_09700 PF00364 Biotin-requiring enzyme MID01_09705 PF00289 Biotin carboxylase, N-terminal domain MID01_09705 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MID01_09705 PF02785 Biotin carboxylase C-terminal domain MID01_09710 PF00501 AMP-binding enzyme MID01_09710 PF13193 AMP-binding enzyme C-terminal domain MID01_09715 PF02770 Acyl-CoA dehydrogenase, middle domain MID01_09715 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MID01_09715 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MID01_09725 PF02638 Glycosyl hydrolase-like 10 MID01_09730 PF07098 Protein of unknown function (DUF1360) MID01_09735 PF00550 Phosphopantetheine attachment site MID01_09735 PF13193 AMP-binding enzyme C-terminal domain MID01_09735 PF00501 AMP-binding enzyme MID01_09735 PF00975 Thioesterase domain MID01_09735 PF00668 Condensation domain MID01_09740 PF00501 AMP-binding enzyme MID01_09740 PF00550 Phosphopantetheine attachment site MID01_09740 PF13193 AMP-binding enzyme C-terminal domain MID01_09740 PF00668 Condensation domain MID01_09745 PF00550 Phosphopantetheine attachment site MID01_09745 PF00668 Condensation domain MID01_09745 PF13193 AMP-binding enzyme C-terminal domain MID01_09745 PF00501 AMP-binding enzyme MID01_09750 PF00550 Phosphopantetheine attachment site MID01_09750 PF00668 Condensation domain MID01_09750 PF13193 AMP-binding enzyme C-terminal domain MID01_09750 PF00501 AMP-binding enzyme MID01_09755 PF00550 Phosphopantetheine attachment site MID01_09755 PF13193 AMP-binding enzyme C-terminal domain MID01_09755 PF00501 AMP-binding enzyme MID01_09755 PF00668 Condensation domain MID01_09760 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family MID01_09765 PF01263 Aldose 1-epimerase MID01_09770 PF01554 MatE MID01_09775 PF16800 IseA DL-endopeptidase inhibitor MID01_09785 PF00589 Phage integrase family MID01_09790 PF12728 Helix-turn-helix domain MID01_09800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID01_09800 PF03466 LysR substrate binding domain MID01_09810 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster MID01_09810 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID01_09815 PF01645 Conserved region in glutamate synthase MID01_09815 PF01493 GXGXG motif MID01_09815 PF00310 Glutamine amidotransferases class-II MID01_09815 PF04898 Glutamate synthase central domain MID01_09820 PF03466 LysR substrate binding domain MID01_09820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID01_09825 PF01472 PUA domain MID01_09825 PF00696 Amino acid kinase family MID01_09830 PF14748 Pyrroline-5-carboxylate reductase dimerisation MID01_09830 PF03807 NADP oxidoreductase coenzyme F420-dependent MID01_09835 PF02334 Replication terminator protein MID01_09840 PF00106 short chain dehydrogenase MID01_09845 PF06103 Bacterial protein of unknown function (DUF948) MID01_09855 PF13302 Acetyltransferase (GNAT) domain MID01_09870 PF00005 ABC transporter MID01_09880 PF07690 Major Facilitator Superfamily MID01_09885 PF00370 FGGY family of carbohydrate kinases, N-terminal domain MID01_09885 PF02782 FGGY family of carbohydrate kinases, C-terminal domain MID01_09890 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MID01_09890 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MID01_09895 PF00384 Molybdopterin oxidoreductase MID01_09895 PF01568 Molydopterin dinucleotide binding domain MID01_09895 PF04879 Molybdopterin oxidoreductase Fe4S4 domain MID01_09905 PF00083 Sugar (and other) transporter MID01_09910 PF02894 Oxidoreductase family, C-terminal alpha/beta domain MID01_09910 PF01408 Oxidoreductase family, NAD-binding Rossmann fold MID01_09915 PF01261 Xylose isomerase-like TIM barrel MID01_09920 PF00356 Bacterial regulatory proteins, lacI family MID01_09930 PF13217 Protein of unknown function (DUF4025) MID01_09935 PF00672 HAMP domain MID01_09935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID01_09935 PF05227 CHASE3 domain MID01_09940 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal MID01_09940 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal MID01_09945 PF03330 Lytic transglycolase MID01_09950 PF06912 Protein of unknown function (DUF1275) MID01_09955 PF00544 Pectate lyase MID01_09960 PF02586 SOS response associated peptidase (SRAP) MID01_09970 PF00190 Cupin MID01_09975 PF16302 Domain of unknown function (DUF4944) MID01_09995 PF04294 VanW like protein MID01_10000 PF11188 Protein of unknown function (DUF2975) MID01_10010 PF05675 Protein of unknown function (DUF817) MID01_10015 PF03466 LysR substrate binding domain MID01_10015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID01_10020 PF00892 EamA-like transporter family MID01_10030 PF01965 DJ-1/PfpI family MID01_10040 PF11518 Protein of unknown function (DUF3221) MID01_10055 PF00391 PEP-utilising enzyme, mobile domain MID01_10055 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain MID01_10060 PF00457 Glycosyl hydrolases family 11 MID01_10065 PF05154 TM2 domain MID01_10110 PF14037 YoqO-like protein MID01_10120 PF18801 response regulator aspartate phosphatase H, N terminal MID01_10145 PF09346 SMI1 / KNR4 family (SUKH-1) MID01_10150 PF01593 Flavin containing amine oxidoreductase MID01_10155 PF01588 Putative tRNA binding domain MID01_10160 PF07883 Cupin domain MID01_10160 PF12833 Helix-turn-helix domain MID01_10165 PF00583 Acetyltransferase (GNAT) family MID01_10170 PF00440 Bacterial regulatory proteins, tetR family MID01_10170 PF13305 Tetracyclin repressor-like, C-terminal domain MID01_10175 PF00753 Metallo-beta-lactamase superfamily MID01_10180 PF06445 GyrI-like small molecule binding domain MID01_10185 PF13280 WYL domain MID01_10185 PF08279 HTH domain MID01_10195 PF01022 Bacterial regulatory protein, arsR family MID01_10205 PF04238 Protein of unknown function (DUF420) MID01_10210 PF18846 Bacterial archaeo-eukaryotic release factor family 5 MID01_10220 PF17676 LD-carboxypeptidase C-terminal domain MID01_10220 PF02016 LD-carboxypeptidase N-terminal domain MID01_10225 PF00487 Fatty acid desaturase MID01_10230 PF07730 Histidine kinase MID01_10235 PF00072 Response regulator receiver domain MID01_10235 PF00196 Bacterial regulatory proteins, luxR family MID01_10240 PF06725 3D domain MID01_10240 PF01476 LysM domain MID01_10245 PF09382 RQC domain MID01_10245 PF16124 RecQ zinc-binding MID01_10245 PF00570 HRDC domain MID01_10245 PF00271 Helicase conserved C-terminal domain MID01_10245 PF00270 DEAD/DEAH box helicase MID01_10255 PF02525 Flavodoxin-like fold MID01_10260 PF01258 Prokaryotic dksA/traR C4-type zinc finger MID01_10275 PF00011 Hsp20/alpha crystallin family MID01_10290 PF08000 Bacterial PH domain MID01_10300 PF00171 Aldehyde dehydrogenase family MID01_10305 PF13249 Squalene-hopene cyclase N-terminal domain MID01_10305 PF13243 Squalene-hopene cyclase C-terminal domain MID01_10310 PF02777 Iron/manganese superoxide dismutases, C-terminal domain MID01_10310 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain MID01_10315 PF00209 Sodium:neurotransmitter symporter family MID01_10320 PF01758 Sodium Bile acid symporter family MID01_10325 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) MID01_10325 PF02817 e3 binding domain MID01_10325 PF00364 Biotin-requiring enzyme MID01_10330 PF00676 Dehydrogenase E1 component MID01_10330 PF16870 2-oxoglutarate dehydrogenase C-terminal MID01_10330 PF02779 Transketolase, pyrimidine binding domain MID01_10335 PF00092 von Willebrand factor type A domain MID01_10340 PF07728 AAA domain (dynein-related subfamily) MID01_10345 PF00080 Copper/zinc superoxide dismutase (SODC) MID01_10345 PF13627 Prokaryotic lipoprotein-attachment site MID01_10350 PF01476 LysM domain MID01_10350 PF00877 NlpC/P60 family MID01_10355 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase MID01_10360 PF10372 Bacterial membrane-spanning protein N-terminus MID01_10360 PF02457 DisA bacterial checkpoint controller nucleotide-binding MID01_10365 PF01554 MatE MID01_10370 PF01740 STAS domain MID01_10375 PF02585 GlcNAc-PI de-N-acetylase MID01_10380 PF08830 Protein of unknown function (DUF1806) MID01_10390 PF00892 EamA-like transporter family MID01_10405 PF02447 GntP family permease MID01_10410 PF14552 Tautomerase enzyme MID01_10415 PF01638 HxlR-like helix-turn-helix MID01_10420 PF00881 Nitroreductase family MID01_10425 PF01738 Dienelactone hydrolase family MID01_10430 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MID01_10435 PF11755 Protein of unknown function (DUF3311) MID01_10440 PF00474 Sodium:solute symporter family MID01_10445 PF17820 PDZ domain MID01_10445 PF01471 Putative peptidoglycan binding domain MID01_10445 PF03572 Peptidase family S41 MID01_10450 PF08241 Methyltransferase domain MID01_10460 PF02557 D-alanyl-D-alanine carboxypeptidase MID01_10465 PF01048 Phosphorylase superfamily MID01_10475 PF14191 YodL-like MID01_10480 PF01569 PAP2 superfamily MID01_10485 PF14162 YozD-like protein MID01_10500 PF06855 YozE SAM-like fold MID01_10505 PF14122 YokU-like protein, putative antitoxin MID01_10510 PF12544 Lysine-2,3-aminomutase MID01_10515 PF00583 Acetyltransferase (GNAT) family MID01_10520 PF07687 Peptidase dimerisation domain MID01_10520 PF01546 Peptidase family M20/M25/M40 MID01_10525 PF01144 Coenzyme A transferase MID01_10530 PF01144 Coenzyme A transferase MID01_10535 PF00202 Aminotransferase class-III MID01_10550 PF00583 Acetyltransferase (GNAT) family MID01_10555 PF00535 Glycosyl transferase family 2 MID01_10570 PF12996 DUF based on E. rectale Gene description (DUF3880) MID01_10575 PF02333 Phytase MID01_10580 PF02719 Polysaccharide biosynthesis protein MID01_10580 PF08485 Polysaccharide biosynthesis protein C-terminal MID01_10595 PF13443 Cro/C1-type HTH DNA-binding domain MID01_10620 PF00269 Small, acid-soluble spore proteins, alpha/beta type MID01_10640 PF00186 Dihydrofolate reductase MID01_10645 PF00303 Thymidylate synthase MID01_10675 PF06445 GyrI-like small molecule binding domain MID01_10680 PF00692 dUTPase MID01_10685 PF00085 Thioredoxin MID01_10695 PF13392 HNH endonuclease MID01_10715 PF07972 NrdI Flavodoxin like MID01_10800 PF00145 C-5 cytosine-specific DNA methylase MID01_10805 PF01844 HNH endonuclease MID01_10815 PF02223 Thymidylate kinase MID01_10825 PF09629 YorP protein MID01_10840 PF06725 3D domain MID01_10845 PF07733 Bacterial DNA polymerase III alpha NTPase domain MID01_10845 PF17657 Bacterial DNA polymerase III alpha subunit finger domain MID01_10845 PF14579 Helix-hairpin-helix motif MID01_10845 PF02811 PHP domain MID01_10850 PF01368 DHH family MID01_10850 PF17768 RecJ OB domain MID01_10860 PF03796 DnaB-like helicase C terminal domain MID01_10885 PF09636 XkdW protein MID01_10905 PF02586 SOS response associated peptidase (SRAP) MID01_10910 PF01068 ATP dependent DNA ligase domain MID01_10930 PF14037 YoqO-like protein MID01_11005 PF09467 Hypothetical protein Yopt MID01_11010 PF13443 Cro/C1-type HTH DNA-binding domain MID01_11020 PF14072 DNA-sulfur modification-associated MID01_11025 PF00589 Phage integrase family MID01_11025 PF02899 Phage integrase, N-terminal SAM-like domain MID01_11030 PF01381 Helix-turn-helix MID01_11085 PF13443 Cro/C1-type HTH DNA-binding domain MID01_11095 PF17094 Uncharacterised protein family (UPF0715) MID01_11160 PF00216 Bacterial DNA-binding protein MID01_11200 PF03237 Terminase-like family MID01_11285 PF09693 Phage uncharacterised protein (Phage_XkdX) MID01_11300 PF13495 Phage integrase, N-terminal SAM-like domain MID01_11300 PF00589 Phage integrase family MID01_11320 PF10145 Phage-related minor tail protein MID01_11320 PF01464 Transglycosylase SLT domain MID01_11320 PF01551 Peptidase family M23 MID01_11325 PF05709 Phage tail protein MID01_11330 PF06605 Prophage endopeptidase tail MID01_11340 PF09992 Phosphodiester glycosidase MID01_11340 PF12708 Pectate lyase superfamily protein MID01_11345 PF01510 N-acetylmuramoyl-L-alanine amidase MID01_11360 PF18801 response regulator aspartate phosphatase H, N terminal MID01_11375 PF08863 YolD-like protein MID01_11400 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH MID01_11400 PF04740 LXG domain of WXG superfamily MID01_11415 PF05901 Excalibur calcium-binding domain MID01_11415 PF00565 Staphylococcal nuclease homologue MID01_11430 PF00239 Resolvase, N terminal domain MID01_11430 PF07508 Recombinase MID01_11435 PF02719 Polysaccharide biosynthesis protein MID01_11440 PF01641 SelR domain MID01_11445 PF01625 Peptide methionine sulfoxide reductase MID01_11450 PF01047 MarR family MID01_11455 PF01554 MatE MID01_11460 PF17431 Uncharacterized YmpT-like MID01_11465 PF09911 Uncharacterized protein conserved in bacteria (DUF2140) MID01_11470 PF13472 GDSL-like Lipase/Acylhydrolase family MID01_11475 PF02630 SCO1/SenC MID01_11480 PF10751 Protein of unknown function (DUF2535) MID01_11485 PF00291 Pyridoxal-phosphate dependent enzyme MID01_11485 PF00585 C-terminal regulatory domain of Threonine dehydratase MID01_11490 PF00158 Sigma-54 interaction domain MID01_11490 PF08461 Ribonuclease R winged-helix domain MID01_11495 PF03006 Haemolysin-III related MID01_11505 PF00186 Dihydrofolate reductase MID01_11510 PF04608 Phosphatidylglycerophosphatase A MID01_11515 PF14005 YpjP-like protein MID01_11520 PF04445 Putative SAM-dependent methyltransferase MID01_11525 PF06491 Disulphide isomerase MID01_11530 PF00920 Dehydratase family MID01_11535 PF13769 Virulence factor MID01_11535 PF08712 Scaffold protein Nfu/NifU N terminal MID01_11540 PF01966 HD domain MID01_11545 PF00255 Glutathione peroxidase MID01_11550 PF04204 Homoserine O-succinyltransferase MID01_11555 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase MID01_11555 PF00534 Glycosyl transferases group 1 MID01_11565 PF00313 'Cold-shock' DNA-binding domain MID01_11575 PF10819 Protein of unknown function (DUF2564) MID01_11580 PF10782 Zinc-finger MID01_11585 PF13456 Reverse transcriptase-like MID01_11590 PF02592 Putative vitamin uptake transporter MID01_11595 PF13456 Reverse transcriptase-like MID01_11605 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain MID01_11605 PF01367 5'-3' exonuclease, C-terminal SAM fold MID01_11615 PF10752 Protein of unknown function (DUF2533) MID01_11620 PF00350 Dynamin family MID01_11630 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family MID01_11635 PF00195 Chalcone and stilbene synthases, N-terminal domain MID01_11635 PF02797 Chalcone and stilbene synthases, C-terminal domain MID01_11640 PF00860 Permease family MID01_11645 PF00156 Phosphoribosyl transferase domain MID01_11650 PF02074 Carboxypeptidase Taq (M32) metallopeptidase MID01_11655 PF03812 2-keto-3-deoxygluconate permease MID01_11660 PF01081 KDPG and KHG aldolase MID01_11665 PF00294 pfkB family carbohydrate kinase MID01_11670 PF00356 Bacterial regulatory proteins, lacI family MID01_11675 PF04962 KduI/IolB family MID01_11685 PF13307 Helicase C-terminal domain MID01_11695 PF14139 YpzG-like protein MID01_11700 PF02926 THUMP domain MID01_11700 PF01170 Putative RNA methylase family UPF0020 MID01_11710 PF05103 DivIVA protein MID01_11715 PF06908 YspA SLOG family MID01_11720 PF11122 Inner spore coat protein D MID01_11730 PF13482 RNase_H superfamily MID01_11735 PF00271 Helicase conserved C-terminal domain MID01_11735 PF09369 Domain of unknown function (DUF1998) MID01_11735 PF00270 DEAD/DEAH box helicase MID01_11740 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 MID01_11750 PF14179 YppG-like protein MID01_11755 PF14178 YppF-like protein MID01_11760 PF08807 Bacterial domain of unknown function (DUF1798) MID01_11765 PF17522 Family of unknown function (DUF5446) MID01_11775 PF10720 Protein of unknown function (DUF2515) MID01_11780 PF03838 Recombination protein U MID01_11785 PF00905 Penicillin binding protein transpeptidase domain MID01_11785 PF00912 Transglycosylase MID01_11795 PF00730 HhH-GPD superfamily base excision DNA repair protein MID01_11795 PF00633 Helix-hairpin-helix motif MID01_11795 PF10576 Iron-sulfur binding domain of endonuclease III MID01_11800 PF07261 Replication initiation and membrane attachment MID01_11805 PF01336 OB-fold nucleic acid binding domain MID01_11805 PF00152 tRNA synthetases class II (D, K and N) MID01_11810 PF00155 Aminotransferase class I and II MID01_11815 PF17881 Domain of unknown function (DUF5590) MID01_11815 PF03413 Peptidase propeptide and YPEB domain MID01_11820 PF14084 Protein of unknown function (DUF4264) MID01_11825 PF04851 Type III restriction enzyme, res subunit MID01_11825 PF00929 Exonuclease MID01_11825 PF13307 Helicase C-terminal domain MID01_11830 PF02261 Aspartate decarboxylase MID01_11835 PF02569 Pantoate-beta-alanine ligase MID01_11840 PF02548 Ketopantoate hydroxymethyltransferase MID01_11845 PF02237 Biotin protein ligase C terminal domain MID01_11845 PF03099 Biotin/lipoate A/B protein ligase family MID01_11845 PF08279 HTH domain MID01_11850 PF01743 Poly A polymerase head domain MID01_11850 PF12627 Probable RNA and SrmB- binding site of polymerase A MID01_11850 PF13735 tRNA nucleotidyltransferase domain 2 putative MID01_11855 PF00534 Glycosyl transferases group 1 MID01_11855 PF13439 Glycosyltransferase Family 4 MID01_11860 PF02585 GlcNAc-PI de-N-acetylase MID01_11865 PF02142 MGS-like domain MID01_11870 PF05173 Dihydrodipicolinate reductase, C-terminus MID01_11870 PF01113 Dihydrodipicolinate reductase, N-terminus MID01_11875 PF03819 MazG nucleotide pyrophosphohydrolase domain MID01_11880 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) MID01_11880 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 MID01_11885 PF09577 Sporulation protein YpjB (SpoYpjB) MID01_11890 PF07187 Protein of unknown function (DUF1405) MID01_11895 PF00032 Cytochrome b(C-terminal)/b6/petD MID01_11895 PF13442 Cytochrome C oxidase, cbb3-type, subunit III MID01_11900 PF00033 Cytochrome b/b6/petB MID01_11905 PF00355 Rieske [2Fe-2S] domain MID01_11910 PF10673 Protein of unknown function (DUF2487) MID01_11915 PF08858 IDEAL domain MID01_11915 PF08864 UPF0302 domain MID01_11925 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) MID01_11930 PF01842 ACT domain MID01_11930 PF02153 Prephenate dehydrogenase MID01_11935 PF00155 Aminotransferase class I and II MID01_11940 PF00290 Tryptophan synthase alpha chain MID01_11945 PF00291 Pyridoxal-phosphate dependent enzyme MID01_11950 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase MID01_11955 PF00218 Indole-3-glycerol phosphate synthase MID01_11960 PF00591 Glycosyl transferase family, a/b domain MID01_11960 PF02885 Glycosyl transferase family, helical bundle domain MID01_11965 PF00425 chorismate binding enzyme MID01_11965 PF04715 Anthranilate synthase component I, N terminal region MID01_11970 PF07736 Chorismate mutase type I MID01_11975 PF01761 3-dehydroquinate synthase MID01_11980 PF01264 Chorismate synthase MID01_11985 PF03705 CheR methyltransferase, all-alpha domain MID01_11985 PF01739 CheR methyltransferase, SAM binding domain MID01_11990 PF00334 Nucleoside diphosphate kinase MID01_11995 PF00348 Polyprenyl synthetase MID01_12000 PF01209 ubiE/COQ5 methyltransferase family MID01_12005 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 MID01_12010 PF02081 Tryptophan RNA-binding attenuator protein MID01_12015 PF01227 GTP cyclohydrolase I MID01_12020 PF00216 Bacterial DNA-binding protein MID01_12025 PF09547 Stage IV sporulation protein A (spore_IV_A) MID01_12035 PF10966 Protein of unknown function (DUF2768) MID01_12040 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus MID01_12040 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus MID01_12045 PF01926 50S ribosome-binding GTPase MID01_12045 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal MID01_12055 PF14045 YIEGIA protein MID01_12065 PF14140 YpzI-like protein MID01_12070 PF01070 FMN-dependent dehydrogenase MID01_12075 PF00575 S1 RNA binding domain MID01_12080 PF02224 Cytidylate kinase MID01_12085 PF17313 Family of unknown function (DUF5359) MID01_12090 PF12945 Flagellar protein YcgR MID01_12090 PF07238 PilZ domain MID01_12095 PF14620 YpeB sporulation MID01_12095 PF03413 Peptidase propeptide and YPEB domain MID01_12100 PF01471 Putative peptidoglycan binding domain MID01_12100 PF07486 Cell Wall Hydrolase MID01_12105 PF13367 PrsW family intramembrane metalloprotease MID01_12115 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MID01_12115 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain MID01_12120 PF05389 Negative regulator of genetic competence (MecA) MID01_12125 PF00149 Calcineurin-like phosphoesterase MID01_12130 PF10864 Protein of unknown function (DUF2663) MID01_12135 PF01476 LysM domain MID01_12140 PF02517 CPBP intramembrane metalloprotease MID01_12145 PF00270 DEAD/DEAH box helicase MID01_12145 PF00271 Helicase conserved C-terminal domain MID01_12150 PF14493 Helix-turn-helix domain MID01_12160 PF12822 ECF transporter, substrate-specific component MID01_12165 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MID01_12165 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MID01_12165 PF01842 ACT domain MID01_12170 PF01487 Type I 3-dehydroquinase MID01_12180 PF08281 Sigma-70, region 4 MID01_12180 PF04542 Sigma-70 region 2 MID01_12185 PF00989 PAS fold MID01_12185 PF00512 His Kinase A (phospho-acceptor) domain MID01_12185 PF18698 Histidine kinase sensor domain MID01_12185 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID01_12185 PF00672 HAMP domain MID01_12190 PF00486 Transcriptional regulatory protein, C terminal MID01_12190 PF00072 Response regulator receiver domain MID01_12195 PF01578 Cytochrome C assembly protein MID01_12200 PF05140 ResB-like family MID01_12205 PF00578 AhpC/TSA family MID01_12210 PF01479 S4 domain MID01_12210 PF00849 RNA pseudouridylate synthase MID01_12215 PF07670 Nucleoside recognition MID01_12220 PF07670 Nucleoside recognition MID01_12225 PF00768 D-alanyl-D-alanine carboxypeptidase MID01_12225 PF07943 Penicillin-binding protein 5, C-terminal domain MID01_12230 PF13047 Protein of unknown function (DUF3907) MID01_12235 PF04079 Segregation and condensation complex subunit ScpB MID01_12240 PF02616 Segregation and condensation protein ScpA MID01_12245 PF03745 Domain of unknown function (DUF309) MID01_12250 PF00583 Acetyltransferase (GNAT) family MID01_12255 PF00885 6,7-dimethyl-8-ribityllumazine synthase MID01_12260 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase MID01_12260 PF00925 GTP cyclohydrolase II MID01_12265 PF00677 Lumazine binding domain MID01_12270 PF01872 RibD C-terminal domain MID01_12270 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MID01_12280 PF10502 Signal peptidase, peptidase S26 MID01_12295 PF10676 Spore germination protein gerPA/gerPF MID01_12300 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD MID01_12305 PF06207 Protein of unknown function (DUF1002) MID01_12310 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain MID01_12310 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain MID01_12315 PF03323 Bacillus/Clostridium GerA spore germination protein MID01_12320 PF14097 Stage V sporulation protein AE1 MID01_12325 PF03862 SpoVAC/SpoVAEB sporulation membrane protein MID01_12330 PF07451 Stage V sporulation protein AD (SpoVAD) MID01_12335 PF03862 SpoVAC/SpoVAEB sporulation membrane protein MID01_12340 PF13782 Stage V sporulation protein AB MID01_12345 PF12164 Stage V sporulation protein AA MID01_12350 PF04545 Sigma-70, region 4 MID01_12350 PF04539 Sigma-70 region 3 MID01_12350 PF04542 Sigma-70 region 2 MID01_12355 PF13581 Histidine kinase-like ATPase domain MID01_12360 PF01740 STAS domain MID01_12365 PF00768 D-alanyl-D-alanine carboxypeptidase MID01_12365 PF07943 Penicillin-binding protein 5, C-terminal domain MID01_12370 PF01048 Phosphorylase superfamily MID01_12375 PF01676 Metalloenzyme superfamily MID01_12380 PF00589 Phage integrase family MID01_12380 PF02899 Phage integrase, N-terminal SAM-like domain MID01_12385 PF14004 Protein of unknown function (DUF4227) MID01_12390 PF01475 Ferric uptake regulator family MID01_12395 PF01944 Stage II sporulation protein M MID01_12405 PF00390 Malic enzyme, N-terminal domain MID01_12405 PF03949 Malic enzyme, NAD binding domain MID01_12405 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MID01_12410 PF03553 Na+/H+ antiporter family MID01_12415 PF10415 Fumarase C C-terminus MID01_12415 PF00206 Lyase MID01_12420 PF00710 Asparaginase, N-terminal MID01_12420 PF17763 Glutaminase/Asparaginase C-terminal domain MID01_12425 PF01381 Helix-turn-helix MID01_12435 PF00293 NUDIX domain MID01_12440 PF13072 Mother cell inhibitor of FtsZ MID01_12445 PF00248 Aldo/keto reductase family MID01_12450 PF13025 Protein of unknown function (DUF3886) MID01_12455 PF12146 Serine aminopeptidase, S33 MID01_12460 PF10827 Protein of unknown function (DUF2552) MID01_12465 PF01521 Iron-sulphur cluster biosynthesis MID01_12470 PF04229 GrpB protein MID01_12470 PF13673 Acetyltransferase (GNAT) domain MID01_12475 PF03992 Antibiotic biosynthesis monooxygenase MID01_12480 PF00583 Acetyltransferase (GNAT) family MID01_12485 PF08863 YolD-like protein MID01_12490 PF11799 impB/mucB/samB family C-terminal domain MID01_12490 PF00817 impB/mucB/samB family MID01_12495 PF14164 YqzH-like protein MID01_12500 PF07690 Major Facilitator Superfamily MID01_12515 PF00485 Phosphoribulokinase / Uridine kinase family MID01_12520 PF00291 Pyridoxal-phosphate dependent enzyme MID01_12525 PF00106 short chain dehydrogenase MID01_12530 PF00753 Metallo-beta-lactamase superfamily MID01_12535 PF14748 Pyrroline-5-carboxylate reductase dimerisation MID01_12535 PF03807 NADP oxidoreductase coenzyme F420-dependent MID01_12540 PF01546 Peptidase family M20/M25/M40 MID01_12545 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MID01_12550 PF12146 Serine aminopeptidase, S33 MID01_12555 PF00471 Ribosomal protein L33 MID01_12560 PF12706 Beta-lactamase superfamily domain MID01_12565 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain MID01_12565 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain MID01_12570 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MID01_12570 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain MID01_12575 PF11798 IMS family HHH motif MID01_12575 PF11799 impB/mucB/samB family C-terminal domain MID01_12575 PF00817 impB/mucB/samB family MID01_12585 PF02096 60Kd inner membrane protein MID01_12590 PF09844 Uncharacterized conserved protein (COG2071) MID01_12595 PF01546 Peptidase family M20/M25/M40 MID01_12595 PF07687 Peptidase dimerisation domain MID01_12600 PF01039 Carboxyl transferase domain MID01_12615 PF03734 L,D-transpeptidase catalytic domain MID01_12620 PF06081 Aromatic acid exporter family member 1 MID01_12620 PF11728 Putative aromatic acid exporter C-terminal domain MID01_12625 PF00005 ABC transporter MID01_12630 PF00528 Binding-protein-dependent transport system inner membrane component MID01_12635 PF00497 Bacterial extracellular solute-binding proteins, family 3 MID01_12640 PF06491 Disulphide isomerase MID01_12645 PF00781 Diacylglycerol kinase catalytic domain MID01_12650 PF07690 Major Facilitator Superfamily MID01_12655 PF06445 GyrI-like small molecule binding domain MID01_12655 PF13411 MerR HTH family regulatory protein MID01_12660 PF00364 Biotin-requiring enzyme MID01_12660 PF02817 e3 binding domain MID01_12660 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) MID01_12665 PF02780 Transketolase, C-terminal domain MID01_12665 PF02779 Transketolase, pyrimidine binding domain MID01_12670 PF00676 Dehydrogenase E1 component MID01_12675 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MID01_12675 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID01_12680 PF00871 Acetokinase family MID01_12685 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain MID01_12685 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MID01_12690 PF01515 Phosphate acetyl/butaryl transferase MID01_12695 PF00158 Sigma-54 interaction domain MID01_12695 PF00989 PAS fold MID01_12695 PF02954 Bacterial regulatory protein, Fis family MID01_12700 PF11118 Protein of unknown function (DUF2627) MID01_12710 PF03972 MmgE/PrpD family MID01_12715 PF00285 Citrate synthase, C-terminal domain MID01_12720 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MID01_12720 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MID01_12720 PF02770 Acyl-CoA dehydrogenase, middle domain MID01_12725 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain MID01_12725 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MID01_12730 PF02803 Thiolase, C-terminal domain MID01_12730 PF00108 Thiolase, N-terminal domain MID01_12735 PF03009 Glycerophosphoryl diester phosphodiesterase family MID01_12740 PF01520 N-acetylmuramoyl-L-alanine amidase MID01_12755 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MID01_12760 PF08769 Sporulation initiation factor Spo0A C terminal MID01_12760 PF00072 Response regulator receiver domain MID01_12765 PF05580 SpoIVB peptidase S55 MID01_12765 PF17820 PDZ domain MID01_12770 PF13476 AAA domain MID01_12775 PF01316 Arginine repressor, DNA binding domain MID01_12775 PF02863 Arginine repressor, C-terminal domain MID01_12780 PF01479 S4 domain MID01_12780 PF01728 FtsJ-like methyltransferase MID01_12785 PF02780 Transketolase, C-terminal domain MID01_12785 PF13292 1-deoxy-D-xylulose-5-phosphate synthase MID01_12785 PF02779 Transketolase, pyrimidine binding domain MID01_12790 PF00348 Polyprenyl synthetase MID01_12795 PF02609 Exonuclease VII small subunit MID01_12800 PF02601 Exonuclease VII, large subunit MID01_12800 PF13742 OB-fold nucleic acid binding domain MID01_12805 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain MID01_12805 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain MID01_12810 PF01029 NusB family MID01_12815 PF03780 Asp23 family, cell envelope-related function MID01_12820 PF02785 Biotin carboxylase C-terminal domain MID01_12820 PF00289 Biotin carboxylase, N-terminal domain MID01_12820 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MID01_12825 PF00364 Biotin-requiring enzyme MID01_12830 PF12685 SpoIIIAH-like protein MID01_12840 PF09581 Stage III sporulation protein AF (Spore_III_AF) MID01_12845 PF09546 Stage III sporulation protein AE (spore_III_AE) MID01_12850 PF06686 Stage III sporulation protein AC/AD protein family MID01_12855 PF06686 Stage III sporulation protein AC/AD protein family MID01_12860 PF09548 Stage III sporulation protein AB (spore_III_AB) MID01_12870 PF10942 Protein of unknown function (DUF2619) MID01_12875 PF08207 Elongation factor P (EF-P) KOW-like domain MID01_12875 PF01132 Elongation factor P (EF-P) OB domain MID01_12875 PF09285 Elongation factor P, C-terminal MID01_12880 PF01321 Creatinase/Prolidase N-terminal domain MID01_12880 PF00557 Metallopeptidase family M24 MID01_12885 PF01220 Dehydroquinase class II MID01_12890 PF11085 Conserved membrane protein YqhR MID01_12895 PF07136 Protein of unknown function (DUF1385) MID01_12905 PF01734 Patatin-like phospholipase MID01_12910 PF01325 Iron dependent repressor, N-terminal DNA binding domain MID01_12910 PF02742 Iron dependent repressor, metal binding and dimerisation domain MID01_12915 PF03099 Biotin/lipoate A/B protein ligase family MID01_12920 PF00581 Rhodanese-like domain MID01_12925 PF02347 Glycine cleavage system P-protein MID01_12930 PF02347 Glycine cleavage system P-protein MID01_12935 PF01571 Aminomethyltransferase folate-binding domain MID01_12935 PF08669 Glycine cleavage T-protein C-terminal barrel domain MID01_12940 PF00271 Helicase conserved C-terminal domain MID01_12940 PF00176 SNF2 family N-terminal domain MID01_12945 PF11079 Bacterial protein YqhG of unknown function MID01_12950 PF08671 Anti-repressor SinI MID01_12955 PF08671 Anti-repressor SinI MID01_12955 PF01381 Helix-turn-helix MID01_12960 PF12389 Camelysin metallo-endopeptidase MID01_12975 PF13028 Protein of unknown function (DUF3889) MID01_12980 PF14038 YqzE-like protein MID01_12985 PF14173 ComG operon protein 7 MID01_12990 PF15980 Putative Competence protein ComGF MID01_13000 PF07963 Prokaryotic N-terminal methylation motif MID01_13005 PF07963 Prokaryotic N-terminal methylation motif MID01_13010 PF00482 Type II secretion system (T2SS), protein F MID01_13015 PF00437 Type II/IV secretion system protein MID01_13020 PF01544 CorA-like Mg2+ transporter protein MID01_13025 PF01595 Cyclin M transmembrane N-terminal domain MID01_13025 PF03471 Transporter associated domain MID01_13025 PF00571 CBS domain MID01_13030 PF01740 STAS domain MID01_13030 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain MID01_13040 PF03960 ArsC family MID01_13045 PF11117 Protein of unknown function (DUF2626) MID01_13050 PF00753 Metallo-beta-lactamase superfamily MID01_13055 PF10958 Protein of unknown function (DUF2759) MID01_13060 PF01910 Thiamine-binding protein MID01_13070 PF00246 Zinc carboxypeptidase MID01_13075 PF00884 Sulfatase MID01_13080 PF00480 ROK family MID01_13085 PF06014 Bacterial protein of unknown function (DUF910) MID01_13090 PF01694 Rhomboid family MID01_13100 PF01812 5-formyltetrahydrofolate cyclo-ligase family MID01_13105 PF00471 Ribosomal protein L33 MID01_13110 PF00534 Glycosyl transferases group 1 MID01_13110 PF13439 Glycosyltransferase Family 4 MID01_13130 PF00005 ABC transporter MID01_13135 PF00005 ABC transporter MID01_13140 PF00528 Binding-protein-dependent transport system inner membrane component MID01_13145 PF00528 Binding-protein-dependent transport system inner membrane component MID01_13150 PF12849 PBP superfamily domain MID01_13155 PF00905 Penicillin binding protein transpeptidase domain MID01_13155 PF03717 Penicillin-binding Protein dimerisation domain MID01_13160 PF07690 Major Facilitator Superfamily MID01_13165 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain MID01_13165 PF02777 Iron/manganese superoxide dismutases, C-terminal domain MID01_13170 PF04306 Protein of unknown function (DUF456) MID01_13175 PF06691 Protein of unknown function (DUF1189) MID01_13185 PF04551 GcpE protein MID01_13200 PF01475 Ferric uptake regulator family MID01_13205 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) MID01_13205 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 MID01_13210 PF11116 Protein of unknown function (DUF2624) MID01_13215 PF01261 Xylose isomerase-like TIM barrel MID01_13220 PF00271 Helicase conserved C-terminal domain MID01_13220 PF00270 DEAD/DEAH box helicase MID01_13225 PF14181 YqfQ-like protein MID01_13230 PF02401 LytB protein MID01_13235 PF01784 NIF3 (NGG1p interacting factor 3) MID01_13240 PF04816 tRNA (adenine(22)-N(1))-methyltransferase MID01_13245 PF13442 Cytochrome C oxidase, cbb3-type, subunit III MID01_13250 PF04542 Sigma-70 region 2 MID01_13250 PF00140 Sigma-70 factor, region 1.2 MID01_13250 PF03979 Sigma-70 factor, region 1.1 MID01_13250 PF04545 Sigma-70, region 4 MID01_13250 PF04539 Sigma-70 region 3 MID01_13255 PF10410 DnaB-helicase binding domain of primase MID01_13255 PF08275 DNA primase catalytic core, N-terminal domain MID01_13255 PF01807 CHC2 zinc finger MID01_13260 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 MID01_13265 PF03618 Kinase/pyrophosphorylase MID01_13270 PF08279 HTH domain MID01_13270 PF00571 CBS domain MID01_13275 PF02092 Glycyl-tRNA synthetase beta subunit MID01_13280 PF02091 Glycyl-tRNA synthetase alpha subunit MID01_13285 PF02565 Recombination protein O C terminal MID01_13285 PF11967 Recombination protein O N terminal MID01_13290 PF14006 YqzL-like protein MID01_13295 PF07650 KH domain MID01_13295 PF01926 50S ribosome-binding GTPase MID01_13300 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MID01_13305 PF01219 Prokaryotic diacylglycerol kinase MID01_13310 PF02130 Uncharacterized protein family UPF0054 MID01_13315 PF01966 HD domain MID01_13315 PF07697 7TM-HD extracellular MID01_13315 PF07698 7TM receptor with intracellular HD hydrolase MID01_13320 PF02562 PhoH-like protein MID01_13325 PF06898 Putative stage IV sporulation protein YqfD MID01_13330 PF07873 YabP family MID01_13340 PF12127 SigmaW regulon antibacterial MID01_13345 PF01957 NfeD-like C-terminal, partner-binding MID01_13345 PF01972 Serine dehydrogenase proteinase MID01_13350 PF09424 Yqey-like protein MID01_13355 PF01165 Ribosomal protein S21 MID01_13360 PF02690 Na+/Pi-cotransporter MID01_13365 PF04055 Radical SAM superfamily MID01_13365 PF00919 Uncharacterized protein family UPF0004 MID01_13365 PF01938 TRAM domain MID01_13370 PF04452 RNA methyltransferase MID01_13380 PF00226 DnaJ domain MID01_13380 PF01556 DnaJ C terminal domain MID01_13380 PF00684 DnaJ central domain MID01_13385 PF00012 Hsp70 protein MID01_13390 PF01025 GrpE MID01_13395 PF01628 HrcA protein C terminal domain MID01_13400 PF04055 Radical SAM superfamily MID01_13400 PF06969 HemN C-terminal domain MID01_13405 PF00009 Elongation factor Tu GTP binding domain MID01_13405 PF06421 GTP-binding protein LepA C-terminus MID01_13405 PF03144 Elongation factor Tu domain 2 MID01_13405 PF00679 Elongation factor G C-terminus MID01_13410 PF12438 Protein of unknown function (DUF3679) MID01_13415 PF07454 Stage II sporulation protein P (SpoIIP) MID01_13420 PF03418 Germination protease MID01_13425 PF01649 Ribosomal protein S20 MID01_13430 PF06144 DNA polymerase III, delta subunit MID01_13440 PF14141 YqzM-like protein MID01_13445 PF03772 Competence protein MID01_13445 PF00753 Metallo-beta-lactamase superfamily MID01_13445 PF13567 Domain of unknown function (DUF4131) MID01_13450 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MID01_13455 PF10531 SLBB domain MID01_13460 PF03807 NADP oxidoreductase coenzyme F420-dependent MID01_13460 PF14748 Pyrroline-5-carboxylate reductase dimerisation MID01_13465 PF13649 Methyltransferase domain MID01_13475 PF01966 HD domain MID01_13480 PF01467 Cytidylyltransferase-like MID01_13485 PF01985 CRS1 / YhbY (CRM) domain MID01_13490 PF08501 Shikimate dehydrogenase substrate binding domain MID01_13490 PF18317 Shikimate 5'-dehydrogenase C-terminal domain MID01_13490 PF01488 Shikimate / quinate 5-dehydrogenase MID01_13495 PF01926 50S ribosome-binding GTPase MID01_13505 PF08970 Sporulation inhibitor A MID01_13510 PF00657 GDSL-like Lipase/Acylhydrolase MID01_13515 PF01471 Putative peptidoglycan binding domain MID01_13515 PF01510 N-acetylmuramoyl-L-alanine amidase MID01_13520 PF09335 SNARE associated Golgi protein MID01_13525 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MID01_13525 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain MID01_13535 PF14040 Deoxyribonuclease NucA/NucB MID01_13545 PF07508 Recombinase MID01_13545 PF00239 Resolvase, N terminal domain MID01_13545 PF13408 Recombinase zinc beta ribbon domain MID01_13555 PF01451 Low molecular weight phosphotyrosine protein phosphatase MID01_13560 PF01758 Sodium Bile acid symporter family MID01_13565 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MID01_13570 PF01022 Bacterial regulatory protein, arsR family MID01_13575 PF08892 YqcI/YcgG family MID01_13580 PF13181 Tetratricopeptide repeat MID01_13580 PF18801 response regulator aspartate phosphatase H, N terminal MID01_13595 PF14449 Pre-toxin TG MID01_13595 PF04740 LXG domain of WXG superfamily MID01_13595 PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues MID01_13600 PF05076 Suppressor of fused protein (SUFU) MID01_13620 PF01471 Putative peptidoglycan binding domain MID01_13620 PF01510 N-acetylmuramoyl-L-alanine amidase MID01_13625 PF05105 Bacteriophage holin family MID01_13635 PF09693 Phage uncharacterised protein (Phage_XkdX) MID01_13640 PF09636 XkdW protein MID01_13655 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) MID01_13660 PF04865 Baseplate J-like protein MID01_13665 PF10934 Protein of unknown function (DUF2634) MID01_13670 PF10844 Protein of unknown function (DUF2577) MID01_13680 PF01476 LysM domain MID01_13685 PF01464 Transglycosylase SLT domain MID01_13695 PF08890 Phage XkdN-like tail assembly chaperone protein, TAC MID01_13710 PF09393 Phage tail tube protein MID01_13715 PF17481 Phage tail sheath protein beta-sandwich domain MID01_13715 PF17482 Phage tail sheath C-terminal domain MID01_13715 PF04984 Phage tail sheath protein subtilisin-like domain MID01_13730 PF04883 Bacteriophage HK97-gp10, putative tail-component MID01_13735 PF12206 Domain of unknown function (DUF3599) MID01_13740 PF11436 Protein of unknown function (DUF3199) MID01_13745 PF14553 YqbF, hypothetical protein domain MID01_13750 PF05065 Phage capsid family MID01_13755 PF14550 Putative phage serine protease XkdF MID01_13765 PF04233 Phage Mu protein F like protein MID01_13770 PF04860 Phage portal protein MID01_13775 PF17288 Terminase RNAseH like domain MID01_13775 PF04466 Phage terminase large subunit MID01_13780 PF10668 Phage terminase small subunit MID01_13800 PF17356 Phage-like element PBSX protein XtrA MID01_13805 PF05866 Endodeoxyribonuclease RusA MID01_13815 PF01695 IstB-like ATP binding protein MID01_13820 PF07261 Replication initiation and membrane attachment MID01_13825 PF03837 RecT family MID01_13830 PF09588 YqaJ-like viral recombinase domain MID01_13835 PF09466 Hypothetical protein Yqai MID01_13845 PF17448 Uncharacterized YqaH-like MID01_13850 PF01381 Helix-turn-helix MID01_13860 PF01381 Helix-turn-helix MID01_13865 PF01381 Helix-turn-helix MID01_13880 PF06114 IrrE N-terminal-like domain MID01_13905 PF06146 Phosphate-starvation-inducible E MID01_13910 PF00512 His Kinase A (phospho-acceptor) domain MID01_13915 PF00072 Response regulator receiver domain MID01_13915 PF00486 Transcriptional regulatory protein, C terminal MID01_13920 PF04235 Protein of unknown function (DUF418) MID01_13930 PF00583 Acetyltransferase (GNAT) family MID01_13935 PF02525 Flavodoxin-like fold MID01_13940 PF13787 Protein of unknown function with HXXEE motif MID01_13945 PF01925 Sulfite exporter TauE/SafE MID01_13950 PF01206 Sulfurtransferase TusA MID01_13965 PF01206 Sulfurtransferase TusA MID01_13965 PF00581 Rhodanese-like domain MID01_13975 PF13686 DsrE/DsrF/DrsH-like family MID01_13980 PF02583 Metal-sensitive transcriptional repressor MID01_13990 PF07883 Cupin domain MID01_14005 PF06445 GyrI-like small molecule binding domain MID01_14005 PF13411 MerR HTH family regulatory protein MID01_14010 PF07690 Major Facilitator Superfamily MID01_14015 PF00583 Acetyltransferase (GNAT) family MID01_14020 PF00571 CBS domain MID01_14020 PF01595 Cyclin M transmembrane N-terminal domain MID01_14020 PF03471 Transporter associated domain MID01_14025 PF14142 YrzO-like protein MID01_14030 PF00892 EamA-like transporter family MID01_14035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID01_14035 PF03466 LysR substrate binding domain MID01_14045 PF01545 Cation efflux family MID01_14045 PF16916 Dimerisation domain of Zinc Transporter MID01_14050 PF14552 Tautomerase enzyme MID01_14055 PF03466 LysR substrate binding domain MID01_14055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID01_14065 PF05525 Branched-chain amino acid transport protein MID01_14070 PF05437 Branched-chain amino acid transport protein (AzlD) MID01_14075 PF03591 AzlC protein MID01_14080 PF01037 Lrp/AsnC ligand binding domain MID01_14085 PF01337 Barstar (barnase inhibitor) MID01_14090 PF00067 Cytochrome P450 MID01_14100 PF00857 Isochorismatase family MID01_14105 PF10823 Protein of unknown function (DUF2568) MID01_14115 PF05163 DinB family MID01_14120 PF04439 Streptomycin adenylyltransferase MID01_14125 PF03060 Nitronate monooxygenase MID01_14130 PF01177 Asp/Glu/Hydantoin racemase MID01_14135 PF15493 Domain of unknown function, YrpD MID01_14140 PF07729 FCD domain MID01_14140 PF00392 Bacterial regulatory proteins, gntR family MID01_14150 PF07690 Major Facilitator Superfamily MID01_14160 PF02780 Transketolase, C-terminal domain MID01_14160 PF02779 Transketolase, pyrimidine binding domain MID01_14165 PF02779 Transketolase, pyrimidine binding domain MID01_14165 PF00456 Transketolase, thiamine diphosphate binding domain MID01_14165 PF02780 Transketolase, C-terminal domain MID01_14170 PF07690 Major Facilitator Superfamily MID01_14175 PF01047 MarR family MID01_14180 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment MID01_14185 PF04542 Sigma-70 region 2 MID01_14185 PF08281 Sigma-70, region 4 MID01_14190 PF00248 Aldo/keto reductase family MID01_14195 PF03600 Citrate transporter MID01_14200 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID01_14200 PF03466 LysR substrate binding domain MID01_14205 PF04303 PrpF protein MID01_14210 PF01374 Glycosyl hydrolase family 46 MID01_14220 PF00561 alpha/beta hydrolase fold MID01_14240 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MID01_14250 PF07875 Coat F domain MID01_14255 PF13823 Alcohol dehydrogenase GroES-associated MID01_14255 PF00107 Zinc-binding dehydrogenase MID01_14255 PF08240 Alcohol dehydrogenase GroES-like domain MID01_14265 PF07875 Coat F domain MID01_14270 PF13411 MerR HTH family regulatory protein MID01_14280 PF00107 Zinc-binding dehydrogenase MID01_14280 PF08240 Alcohol dehydrogenase GroES-like domain MID01_14285 PF01965 DJ-1/PfpI family MID01_14290 PF00251 Glycosyl hydrolases family 32 N-terminal domain MID01_14290 PF08244 Glycosyl hydrolases family 32 C terminal MID01_14300 PF03613 PTS system mannose/fructose/sorbose family IID component MID01_14305 PF03609 PTS system sorbose-specific iic component MID01_14310 PF03830 PTS system sorbose subfamily IIB component MID01_14315 PF03610 PTS system fructose IIA component MID01_14320 PF00874 PRD domain MID01_14320 PF00158 Sigma-54 interaction domain MID01_14320 PF03610 PTS system fructose IIA component MID01_14330 PF00324 Amino acid permease MID01_14335 PF01810 LysE type translocator MID01_14340 PF01978 Sugar-specific transcriptional regulator TrmB MID01_14340 PF11495 Archaeal transcriptional regulator TrmB MID01_14345 PF08281 Sigma-70, region 4 MID01_14345 PF04542 Sigma-70 region 2 MID01_14350 PF13739 Deacetylase PdaC MID01_14350 PF11738 Protein of unknown function (DUF3298) MID01_14355 PF01757 Acyltransferase family MID01_14360 PF14145 YrhK-like protein MID01_14365 PF00067 Cytochrome P450 MID01_14365 PF00175 Oxidoreductase NAD-binding domain MID01_14365 PF00258 Flavodoxin MID01_14365 PF00667 FAD binding domain MID01_14370 PF00440 Bacterial regulatory proteins, tetR family MID01_14370 PF16295 Tetracyclin repressor-like, C-terminal domain MID01_14375 PF08241 Methyltransferase domain MID01_14385 PF09501 Probable sporulation protein (Bac_small_yrzI) MID01_14390 PF01226 Formate/nitrite transporter MID01_14395 PF10057 Uncharacterized conserved protein (DUF2294) MID01_14400 PF00037 4Fe-4S binding domain MID01_14400 PF04879 Molybdopterin oxidoreductase Fe4S4 domain MID01_14400 PF00384 Molybdopterin oxidoreductase MID01_14400 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region MID01_14400 PF01568 Molydopterin dinucleotide binding domain MID01_14405 PF07849 Protein of unknown function (DUF1641) MID01_14410 PF14143 YrhC-like protein MID01_14415 PF01053 Cys/Met metabolism PLP-dependent enzyme MID01_14420 PF00291 Pyridoxal-phosphate dependent enzyme MID01_14425 PF01048 Phosphorylase superfamily MID01_14430 PF13649 Methyltransferase domain MID01_14435 PF10750 Protein of unknown function (DUF2536) MID01_14440 PF07423 Domain of unknown function (DUF1510) MID01_14445 PF00905 Penicillin binding protein transpeptidase domain MID01_14445 PF03717 Penicillin-binding Protein dimerisation domain MID01_14450 PF03449 Transcription elongation factor, N-terminal MID01_14450 PF01272 Transcription elongation factor, GreA/GreB, C-term MID01_14455 PF00485 Phosphoribulokinase / Uridine kinase family MID01_14460 PF01136 Peptidase family U32 MID01_14460 PF16325 Peptidase family U32 C-terminal domain MID01_14465 PF01136 Peptidase family U32 MID01_14470 PF01596 O-methyltransferase MID01_14475 PF02618 YceG-like family MID01_14480 PF06949 Protein of unknown function (DUF1292) MID01_14485 PF03652 Holliday junction resolvase MID01_14490 PF06135 IreB regulatory phosphoprotein MID01_14495 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MID01_14495 PF01411 tRNA synthetases class II (A) MID01_14495 PF02272 DHHA1 domain MID01_14500 PF01594 AI-2E family transporter MID01_14505 PF00005 ABC transporter MID01_14510 PF00497 Bacterial extracellular solute-binding proteins, family 3 MID01_14515 PF00528 Binding-protein-dependent transport system inner membrane component MID01_14520 PF00528 Binding-protein-dependent transport system inner membrane component MID01_14525 PF13056 Protein of unknown function (DUF3918) MID01_14535 PF05239 PRC-barrel domain MID01_14540 PF13538 UvrD-like helicase C-terminal domain MID01_14540 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain MID01_14540 PF14490 Helix-hairpin-helix containing domain MID01_14545 PF13181 Tetratricopeptide repeat MID01_14545 PF07719 Tetratricopeptide repeat MID01_14555 PF00266 Aminotransferase class-V MID01_14560 PF02082 Transcriptional regulator MID01_14565 PF05496 Holliday junction DNA helicase RuvB P-loop domain MID01_14565 PF12002 MgsA AAA+ ATPase C terminal MID01_14565 PF16193 AAA C-terminal domain MID01_14570 PF00899 ThiF family MID01_14580 PF01336 OB-fold nucleic acid binding domain MID01_14580 PF00152 tRNA synthetases class II (D, K and N) MID01_14580 PF02938 GAD domain MID01_14585 PF13393 Histidyl-tRNA synthetase MID01_14585 PF03129 Anticodon binding domain MID01_14590 PF17449 Uncharacterized YrzK-like MID01_14595 PF08239 Bacterial SH3 domain MID01_14595 PF01520 N-acetylmuramoyl-L-alanine amidase MID01_14600 PF02580 D-Tyr-tRNA(Tyr) deacylase MID01_14605 PF13291 ACT domain MID01_14605 PF02824 TGS domain MID01_14605 PF04607 Region found in RelA / SpoT proteins MID01_14610 PF00156 Phosphoribosyl transferase domain MID01_14615 PF01368 DHH family MID01_14615 PF02272 DHHA1 domain MID01_14615 PF17768 RecJ OB domain MID01_14615 PF10141 Single-strand DNA-specific exonuclease, C terminal domain MID01_14620 PF06305 Lipopolysaccharide assembly protein A domain MID01_14625 PF02080 TrkA-C domain MID01_14630 PF07549 SecD/SecF GG Motif MID01_14630 PF02355 Protein export membrane protein MID01_14635 PF13797 Post-transcriptional regulator MID01_14640 PF01943 Polysaccharide biosynthesis protein MID01_14640 PF14667 Polysaccharide biosynthesis C-terminal domain MID01_14645 PF04239 Protein of unknown function (DUF421) MID01_14650 PF12670 Protein of unknown function (DUF3792) MID01_14655 PF02699 Preprotein translocase subunit MID01_14660 PF01702 Queuine tRNA-ribosyltransferase MID01_14665 PF02547 Queuosine biosynthesis protein MID01_14670 PF11146 Protein of unknown function (DUF2905) MID01_14675 PF05496 Holliday junction DNA helicase RuvB P-loop domain MID01_14675 PF17864 RuvB AAA lid domain MID01_14675 PF05491 RuvB C-terminal winged helix domain MID01_14680 PF07499 RuvA, C-terminal domain MID01_14680 PF01330 RuvA N terminal domain MID01_14685 PF08955 BofC C-terminal domain MID01_14685 PF08977 Bypass of Forespore C, N terminal MID01_14690 PF07690 Major Facilitator Superfamily MID01_14695 PF01408 Oxidoreductase family, NAD-binding Rossmann fold MID01_14695 PF02894 Oxidoreductase family, C-terminal alpha/beta domain MID01_14720 PF01235 Sodium:alanine symporter family MID01_14725 PF01709 Transcriptional regulator MID01_14730 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) MID01_14735 PF01476 LysM domain MID01_14740 PF02445 Quinolinate synthetase A protein MID01_14745 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain MID01_14745 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain MID01_14750 PF02910 Fumarate reductase flavoprotein C-term MID01_14750 PF00890 FAD binding domain MID01_14755 PF00266 Aminotransferase class-V MID01_14760 PF08279 HTH domain MID01_14760 PF02829 3H domain MID01_14765 PF00800 Prephenate dehydratase MID01_14765 PF01842 ACT domain MID01_14770 PF01842 ACT domain MID01_14775 PF01926 50S ribosome-binding GTPase MID01_14775 PF01018 GTP1/OBG MID01_14775 PF09269 Domain of unknown function (DUF1967) MID01_14780 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain MID01_14780 PF14682 Sporulation initiation phospho-transferase B, C-terminal MID01_14790 PF01016 Ribosomal L27 protein MID01_14795 PF04327 Cysteine protease Prp MID01_14800 PF00829 Ribosomal prokaryotic L21 protein MID01_14805 PF02163 Peptidase family M50 MID01_14810 PF01551 Peptidase family M23 MID01_14815 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain MID01_14820 PF03775 Septum formation inhibitor MinC, C-terminal domain MID01_14825 PF04093 rod shape-determining protein MreD MID01_14830 PF04085 rod shape-determining protein MreC MID01_14840 PF00633 Helix-hairpin-helix motif MID01_14840 PF04002 RadC-like JAB domain MID01_14845 PF02545 Maf-like protein MID01_14850 PF05036 Sporulation related domain MID01_14855 PF01478 Type IV leader peptidase family MID01_14855 PF06750 Bacterial Peptidase A24 N-terminal domain MID01_14860 PF08245 Mur ligase middle domain MID01_14860 PF02875 Mur ligase family, glutamate ligase domain MID01_14865 PF10458 Valyl tRNA synthetase tRNA binding arm MID01_14865 PF00133 tRNA synthetases class I (I, L, M and V) MID01_14865 PF08264 Anticodon-binding domain of tRNA MID01_14880 PF01476 LysM domain MID01_14885 PF00202 Aminotransferase class-III MID01_14890 PF00490 Delta-aminolevulinic acid dehydratase MID01_14895 PF02602 Uroporphyrinogen-III synthase HemD MID01_14900 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain MID01_14900 PF03900 Porphobilinogen deaminase, C-terminal domain MID01_14905 PF01578 Cytochrome C assembly protein MID01_14910 PF01488 Shikimate / quinate 5-dehydrogenase MID01_14910 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain MID01_14910 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain MID01_14920 PF01926 50S ribosome-binding GTPase MID01_14925 PF02190 ATP-dependent protease La (LON) substrate-binding domain MID01_14925 PF05362 Lon protease (S16) C-terminal proteolytic domain MID01_14925 PF00004 ATPase family associated with various cellular activities (AAA) MID01_14930 PF05362 Lon protease (S16) C-terminal proteolytic domain MID01_14930 PF00004 ATPase family associated with various cellular activities (AAA) MID01_14935 PF06689 ClpX C4-type zinc finger MID01_14935 PF10431 C-terminal, D2-small domain, of ClpB protein MID01_14935 PF07724 AAA domain (Cdc48 subfamily) MID01_14940 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MID01_14940 PF05697 Bacterial trigger factor protein (TF) MID01_14940 PF05698 Bacterial trigger factor protein (TF) C-terminus MID01_14950 PF00694 Aconitase C-terminal domain MID01_14955 PF00330 Aconitase family (aconitate hydratase) MID01_14960 PF00180 Isocitrate/isopropylmalate dehydrogenase MID01_14965 PF08502 LeuA allosteric (dimerisation) domain MID01_14965 PF00682 HMGL-like MID01_14970 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain MID01_14970 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain MID01_14975 PF10369 Small subunit of acetolactate synthase MID01_14975 PF01842 ACT domain MID01_14980 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MID01_14980 PF00205 Thiamine pyrophosphate enzyme, central domain MID01_14980 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MID01_14990 PF00583 Acetyltransferase (GNAT) family MID01_14995 PF11181 Heat induced stress protein YflT MID01_14995 PF09557 Domain of unknown function (DUF2382) MID01_15020 PF17854 FtsK alpha domain MID01_15020 PF01580 FtsK/SpoIIIE family MID01_15020 PF09397 Ftsk gamma domain MID01_15035 PF08863 YolD-like protein MID01_15045 PF01510 N-acetylmuramoyl-L-alanine amidase MID01_15045 PF01471 Putative peptidoglycan binding domain MID01_15080 PF01464 Transglycosylase SLT domain MID01_15120 PF03065 Glycosyl hydrolase family 57 MID01_15120 PF00041 Fibronectin type III domain MID01_15120 PF03423 Carbohydrate binding domain (family 25) MID01_15130 PF00574 Clp protease MID01_15185 PF00535 Glycosyl transferase family 2 MID01_15195 PF05908 Poly-gamma-glutamate hydrolase MID01_15200 PF13229 Right handed beta helix region MID01_15225 PF01068 ATP dependent DNA ligase domain MID01_15250 PF00145 C-5 cytosine-specific DNA methylase MID01_15270 PF06725 3D domain MID01_15270 PF01476 LysM domain MID01_15275 PF02511 Thymidylate synthase complementing protein MID01_15285 PF00692 dUTPase MID01_15290 PF00268 Ribonucleotide reductase, small chain MID01_15305 PF13392 HNH endonuclease MID01_15315 PF07972 NrdI Flavodoxin like MID01_15335 PF02075 Crossover junction endodeoxyribonuclease RuvC MID01_15355 PF09281 Taq polymerase, exonuclease MID01_15355 PF00476 DNA polymerase family A MID01_15355 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain MID01_15355 PF01367 5'-3' exonuclease, C-terminal SAM fold MID01_15480 PF12850 Calcineurin-like phosphoesterase superfamily domain MID01_15485 PF01725 Ham1 family MID01_15490 PF01138 3' exoribonuclease family, domain 1 MID01_15490 PF03725 3' exoribonuclease family, domain 2 MID01_15495 PF10646 Sporulation and spore germination MID01_15500 PF01177 Asp/Glu/Hydantoin racemase MID01_15505 PF01047 MarR family MID01_15510 PF00196 Bacterial regulatory proteins, luxR family MID01_15515 PF03061 Thioesterase superfamily MID01_15520 PF13085 2Fe-2S iron-sulfur cluster binding domain MID01_15520 PF13183 4Fe-4S dicluster domain MID01_15525 PF02910 Fumarate reductase flavoprotein C-term MID01_15525 PF00890 FAD binding domain MID01_15530 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit MID01_15535 PF10702 Protein of unknown function (DUF2507) MID01_15540 PF13840 ACT domain MID01_15540 PF01842 ACT domain MID01_15540 PF00696 Amino acid kinase family MID01_15545 PF08459 UvrC Helix-hairpin-helix N-terminal MID01_15545 PF02151 UvrB/uvrC motif MID01_15545 PF01541 GIY-YIG catalytic domain MID01_15550 PF00085 Thioredoxin MID01_15555 PF06964 Alpha-L-arabinofuranosidase C-terminal domain MID01_15560 PF00766 Electron transfer flavoprotein FAD-binding domain MID01_15560 PF01012 Electron transfer flavoprotein domain MID01_15565 PF01012 Electron transfer flavoprotein domain MID01_15570 PF00378 Enoyl-CoA hydratase/isomerase MID01_15575 PF08359 YsiA-like protein, C-terminal region MID01_15575 PF00440 Bacterial regulatory proteins, tetR family MID01_15580 PF00501 AMP-binding enzyme MID01_15580 PF13193 AMP-binding enzyme C-terminal domain MID01_15585 PF03994 Domain of Unknown Function (DUF350) MID01_15590 PF00488 MutS domain V MID01_15590 PF01713 Smr domain MID01_15595 PF02811 PHP domain MID01_15595 PF14791 DNA polymerase beta thumb MID01_15595 PF14716 Helix-hairpin-helix domain MID01_15600 PF02674 Colicin V production protein MID01_15605 PF05164 Cell division protein ZapA MID01_15610 PF01351 Ribonuclease HII MID01_15610 PF11858 Domain of unknown function (DUF3378) MID01_15615 PF03483 B3/4 domain MID01_15615 PF03147 Ferredoxin-fold anticodon binding domain MID01_15615 PF01588 Putative tRNA binding domain MID01_15615 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain MID01_15615 PF03484 tRNA synthetase B5 domain MID01_15620 PF01409 tRNA synthetases class II core domain (F) MID01_15620 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain MID01_15630 PF00588 SpoU rRNA Methylase family MID01_15630 PF08032 RNA 2'-O ribose methyltransferase substrate binding MID01_15635 PF14098 Small, acid-soluble spore protein I MID01_15640 PF17853 GGDEF-like domain MID01_15640 PF13556 PucR C-terminal helix-turn-helix domain MID01_15640 PF05651 Putative sugar diacid recognition MID01_15645 PF02913 FAD linked oxidases, C-terminal domain MID01_15645 PF01565 FAD binding domain MID01_15650 PF02754 Cysteine-rich domain MID01_15650 PF13183 4Fe-4S dicluster domain MID01_15655 PF12681 Glyoxalase-like domain MID01_15665 PF13722 5TM C-terminal transporter carbon starvation CstA MID01_15665 PF02554 Carbon starvation protein CstA MID01_15670 PF06964 Alpha-L-arabinofuranosidase C-terminal domain MID01_15675 PF00528 Binding-protein-dependent transport system inner membrane component MID01_15680 PF00528 Binding-protein-dependent transport system inner membrane component MID01_15685 PF01547 Bacterial extracellular solute-binding protein MID01_15690 PF13685 Iron-containing alcohol dehydrogenase MID01_15695 PF13344 Haloacid dehalogenase-like hydrolase MID01_15700 PF00596 Class II Aldolase and Adducin N-terminal domain MID01_15705 PF02782 FGGY family of carbohydrate kinases, C-terminal domain MID01_15705 PF00370 FGGY family of carbohydrate kinases, N-terminal domain MID01_15710 PF11762 L-arabinose isomerase C-terminal domain MID01_15710 PF02610 L-arabinose isomerase MID01_15715 PF04616 Glycosyl hydrolases family 43 MID01_15720 PF05343 M42 glutamyl aminopeptidase MID01_15730 PF06961 Protein of unknown function (DUF1294) MID01_15735 PF00453 Ribosomal protein L20 MID01_15740 PF01632 Ribosomal protein L35 MID01_15745 PF00707 Translation initiation factor IF-3, C-terminal domain MID01_15745 PF05198 Translation initiation factor IF-3, N-terminal domain MID01_15755 PF04172 LrgB-like family MID01_15760 PF03788 LrgA family MID01_15765 PF00072 Response regulator receiver domain MID01_15765 PF04397 LytTr DNA-binding domain MID01_15770 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID01_15770 PF07694 5TMR of 5TMR-LYT MID01_15770 PF06580 Histidine kinase MID01_15775 PF13419 Haloacid dehalogenase-like hydrolase MID01_15780 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MID01_15780 PF03129 Anticodon binding domain MID01_15780 PF02824 TGS domain MID01_15780 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MID01_15785 PF08812 YtxC-like family MID01_15790 PF09335 SNARE associated Golgi protein MID01_15795 PF01695 IstB-like ATP binding protein MID01_15795 PF07319 Primosomal protein DnaI N-terminus MID01_15800 PF07261 Replication initiation and membrane attachment MID01_15805 PF03477 ATP cone domain MID01_15810 PF02675 S-adenosylmethionine decarboxylase MID01_15815 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain MID01_15815 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MID01_15820 PF01638 HxlR-like helix-turn-helix MID01_15825 PF07690 Major Facilitator Superfamily MID01_15830 PF00248 Aldo/keto reductase family MID01_15835 PF01121 Dephospho-CoA kinase MID01_15840 PF02659 Putative manganese efflux pump MID01_15845 PF06827 Zinc finger found in FPG and IleRS MID01_15845 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain MID01_15845 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain MID01_15850 PF00476 DNA polymerase family A MID01_15850 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain MID01_15850 PF01367 5'-3' exonuclease, C-terminal SAM fold MID01_15855 PF16736 Single Cache-like MID01_15855 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID01_15855 PF00989 PAS fold MID01_15855 PF00512 His Kinase A (phospho-acceptor) domain MID01_15860 PF00486 Transcriptional regulatory protein, C terminal MID01_15860 PF00072 Response regulator receiver domain MID01_15865 PF00056 lactate/malate dehydrogenase, NAD binding domain MID01_15865 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain MID01_15870 PF00180 Isocitrate/isopropylmalate dehydrogenase MID01_15875 PF00285 Citrate synthase, C-terminal domain MID01_15880 PF04284 Protein of unknown function (DUF441) MID01_15885 PF01594 AI-2E family transporter MID01_15890 PF04186 FxsA cytoplasmic membrane protein MID01_15895 PF00391 PEP-utilising enzyme, mobile domain MID01_15895 PF00224 Pyruvate kinase, barrel domain MID01_15895 PF02887 Pyruvate kinase, alpha/beta domain MID01_15900 PF00365 Phosphofructokinase MID01_15905 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit MID01_15910 PF01039 Carboxyl transferase domain MID01_15910 PF17848 Acetyl-coA carboxylase zinc finger domain MID01_15915 PF00390 Malic enzyme, N-terminal domain MID01_15915 PF03949 Malic enzyme, NAD binding domain MID01_15920 PF14579 Helix-hairpin-helix motif MID01_15920 PF07733 Bacterial DNA polymerase III alpha NTPase domain MID01_15920 PF17657 Bacterial DNA polymerase III alpha subunit finger domain MID01_15920 PF02811 PHP domain MID01_15920 PF01336 OB-fold nucleic acid binding domain MID01_15925 PF14034 Sporulation protein YtrH MID01_15940 PF02272 DHHA1 domain MID01_15940 PF01368 DHH family MID01_15945 PF14007 YtpI-like protein MID01_15950 PF00392 Bacterial regulatory proteins, gntR family MID01_15950 PF07085 DRTGG domain MID01_15950 PF00571 CBS domain MID01_15950 PF03061 Thioesterase superfamily MID01_15955 PF01925 Sulfite exporter TauE/SafE MID01_15960 PF07687 Peptidase dimerisation domain MID01_15960 PF01546 Peptidase family M20/M25/M40 MID01_15965 PF01687 Riboflavin kinase MID01_15970 PF00296 Luciferase-like monooxygenase MID01_15975 PF00462 Glutaredoxin MID01_15980 PF00296 Luciferase-like monooxygenase MID01_15985 PF00005 ABC transporter MID01_15990 PF00528 Binding-protein-dependent transport system inner membrane component MID01_15995 PF00528 Binding-protein-dependent transport system inner membrane component MID01_16000 PF00497 Bacterial extracellular solute-binding proteins, family 3 MID01_16005 PF00497 Bacterial extracellular solute-binding proteins, family 3 MID01_16010 PF00583 Acetyltransferase (GNAT) family MID01_16015 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID01_16015 PF03466 LysR substrate binding domain MID01_16030 PF00206 Lyase MID01_16030 PF14698 Argininosuccinate lyase C-terminal MID01_16035 PF00764 Arginosuccinate synthase MID01_16040 PF00994 Probable molybdopterin binding domain MID01_16045 PF00871 Acetokinase family MID01_16055 PF02384 N-6 DNA Methylase MID01_16060 PF08534 Redoxin MID01_16065 PF09579 Sporulation protein YtfJ (Spore_YtfJ) MID01_16070 PF11167 Protein of unknown function (DUF2953) MID01_16075 PF06271 RDD family MID01_16080 PF01343 Peptidase family S49 MID01_16085 PF01513 ATP-NAD kinase MID01_16090 PF07969 Amidohydrolase family MID01_16095 PF13193 AMP-binding enzyme C-terminal domain MID01_16095 PF00501 AMP-binding enzyme MID01_16100 PF00269 Small, acid-soluble spore proteins, alpha/beta type MID01_16105 PF02568 Thiamine biosynthesis protein (ThiI) MID01_16105 PF02926 THUMP domain MID01_16110 PF00266 Aminotransferase class-V MID01_16115 PF05525 Branched-chain amino acid transport protein MID01_16120 PF06160 Septation ring formation regulator, EzrA MID01_16125 PF02811 PHP domain MID01_16130 PF00440 Bacterial regulatory proteins, tetR family MID01_16135 PF13185 GAF domain MID01_16140 PF00990 Diguanylate cyclase, GGDEF domain MID01_16145 PF01479 S4 domain MID01_16145 PF00163 Ribosomal protein S4/S9 N-terminal domain MID01_16150 PF00579 tRNA synthetases class I (W and Y) MID01_16150 PF01479 S4 domain MID01_16155 PF00501 AMP-binding enzyme MID01_16155 PF13193 AMP-binding enzyme C-terminal domain MID01_16160 PF00583 Acetyltransferase (GNAT) family MID01_16165 PF00571 CBS domain MID01_16170 PF00850 Histone deacetylase domain MID01_16175 PF13677 Membrane MotB of proton-channel complex MotA/MotB MID01_16175 PF00691 OmpA family MID01_16180 PF01618 MotA/TolQ/ExbB proton channel family MID01_16185 PF00356 Bacterial regulatory proteins, lacI family MID01_16190 PF00793 DAHP synthetase I family MID01_16190 PF01817 Chorismate mutase type II MID01_16195 PF11009 Protein of unknown function (DUF2847) MID01_16200 PF12732 YtxH-like protein MID01_16205 PF06103 Bacterial protein of unknown function (DUF948) MID01_16210 PF02875 Mur ligase family, glutamate ligase domain MID01_16210 PF01225 Mur ligase family, catalytic domain MID01_16210 PF08245 Mur ligase middle domain MID01_16215 PF01580 FtsK/SpoIIIE family MID01_16215 PF09397 Ftsk gamma domain MID01_16215 PF17854 FtsK alpha domain MID01_16220 PF01588 Putative tRNA binding domain MID01_16220 PF14794 Domain of unknown function (DUF4479) MID01_16225 PF07285 Protein of unknown function (DUF1444) MID01_16230 PF00085 Thioredoxin MID01_16240 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ MID01_16245 PF05343 M42 glutamyl aminopeptidase MID01_16250 PF03413 Peptidase propeptide and YPEB domain MID01_16255 PF03949 Malic enzyme, NAD binding domain MID01_16255 PF00390 Malic enzyme, N-terminal domain MID01_16260 PF00753 Metallo-beta-lactamase superfamily MID01_16265 PF02390 Putative methyltransferase MID01_16270 PF14165 YtzH-like protein MID01_16275 PF01636 Phosphotransferase enzyme family MID01_16280 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) MID01_16280 PF17999 Pullulanase N1-terminal domain MID01_16280 PF00128 Alpha amylase, catalytic domain MID01_16285 PF00781 Diacylglycerol kinase catalytic domain MID01_16300 PF00291 Pyridoxal-phosphate dependent enzyme MID01_16305 PF01546 Peptidase family M20/M25/M40 MID01_16310 PF00860 Permease family MID01_16315 PF05975 Bacterial ABC transporter protein EcsB MID01_16320 PF00005 ABC transporter MID01_16325 PF08220 DeoR-like helix-turn-helix domain MID01_16330 PF01479 S4 domain MID01_16330 PF00849 RNA pseudouridylate synthase MID01_16335 PF14667 Polysaccharide biosynthesis C-terminal domain MID01_16335 PF01943 Polysaccharide biosynthesis protein MID01_16345 PF02028 BCCT, betaine/carnitine/choline family transporter MID01_16350 PF10957 Sporulation protein Cse60 MID01_16355 PF04854 Protein of unknown function, DUF624 MID01_16360 PF01408 Oxidoreductase family, NAD-binding Rossmann fold MID01_16360 PF02894 Oxidoreductase family, C-terminal alpha/beta domain MID01_16370 PF07470 Glycosyl Hydrolase Family 88 MID01_16375 PF00528 Binding-protein-dependent transport system inner membrane component MID01_16380 PF12833 Helix-turn-helix domain MID01_16380 PF17853 GGDEF-like domain MID01_16385 PF13416 Bacterial extracellular solute-binding protein MID01_16390 PF00528 Binding-protein-dependent transport system inner membrane component MID01_16395 PF01370 NAD dependent epimerase/dehydratase family MID01_16400 PF00067 Cytochrome P450 MID01_16405 PF06968 Biotin and Thiamin Synthesis associated domain MID01_16405 PF04055 Radical SAM superfamily MID01_16415 PF00155 Aminotransferase class I and II MID01_16420 PF00202 Aminotransferase class-III MID01_16425 PF03744 6-carboxyhexanoate--CoA ligase MID01_16430 PF01738 Dienelactone hydrolase family MID01_16435 PF00356 Bacterial regulatory proteins, lacI family MID01_16440 PF01547 Bacterial extracellular solute-binding protein MID01_16445 PF00528 Binding-protein-dependent transport system inner membrane component MID01_16450 PF00528 Binding-protein-dependent transport system inner membrane component MID01_16455 PF11975 Family 4 glycosyl hydrolase C-terminal domain MID01_16455 PF02056 Family 4 glycosyl hydrolase MID01_16460 PF00581 Rhodanese-like domain MID01_16465 PF08264 Anticodon-binding domain of tRNA MID01_16465 PF13603 Leucyl-tRNA synthetase, Domain 2 MID01_16465 PF09334 tRNA synthetases class I (M) MID01_16465 PF00133 tRNA synthetases class I (I, L, M and V) MID01_16470 PF14074 Protein of unknown function (DUF4257) MID01_16475 PF01740 STAS domain MID01_16475 PF13426 PAS domain MID01_16480 PF07690 Major Facilitator Superfamily MID01_16485 PF04791 LMBR1-like membrane protein MID01_16490 PF02687 FtsX-like permease family MID01_16495 PF00005 ABC transporter MID01_16500 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID01_16505 PF00072 Response regulator receiver domain MID01_16505 PF00486 Transcriptional regulatory protein, C terminal MID01_16510 PF02687 FtsX-like permease family MID01_16510 PF12704 MacB-like periplasmic core domain MID01_16515 PF00005 ABC transporter MID01_16530 PF00005 ABC transporter MID01_16535 PF00392 Bacterial regulatory proteins, gntR family MID01_16545 PF10732 Protein of unknown function (DUF2524) MID01_16550 PF16199 Radical_SAM C-terminal domain MID01_16550 PF04055 Radical SAM superfamily MID01_16555 PF06962 Putative rRNA methylase MID01_16560 PF10776 Protein of unknown function (DUF2600) MID01_16565 PF12146 Serine aminopeptidase, S33 MID01_16570 PF00132 Bacterial transferase hexapeptide (six repeats) MID01_16575 PF00324 Amino acid permease MID01_16580 PF13537 Glutamine amidotransferase domain MID01_16580 PF00733 Asparagine synthase MID01_16585 PF00438 S-adenosylmethionine synthetase, N-terminal domain MID01_16585 PF02772 S-adenosylmethionine synthetase, central domain MID01_16585 PF02773 S-adenosylmethionine synthetase, C-terminal domain MID01_16590 PF01293 Phosphoenolpyruvate carboxykinase MID01_16595 PF10763 Protein of unknown function (DUF2584) MID01_16600 PF00326 Prolyl oligopeptidase family MID01_16610 PF00005 ABC transporter MID01_16615 PF00528 Binding-protein-dependent transport system inner membrane component MID01_16620 PF00293 NUDIX domain MID01_16625 PF05105 Bacteriophage holin family MID01_16630 PF00210 Ferritin-like domain MID01_16640 PF13115 YtkA-like MID01_16645 PF02664 S-Ribosylhomocysteinase (LuxS) MID01_16650 PF01809 Putative membrane protein insertion efficiency factor MID01_16655 PF00484 Carbonic anhydrase MID01_16660 PF01197 Ribosomal protein L31 MID01_16665 PF01654 Cytochrome bd terminal oxidase subunit I MID01_16670 PF02322 Cytochrome bd terminal oxidase subunit II MID01_16675 PF07561 Domain of Unknown Function (DUF1540) MID01_16680 PF00950 ABC 3 transport family MID01_16685 PF00950 ABC 3 transport family MID01_16690 PF00005 ABC transporter MID01_16695 PF01297 Zinc-uptake complex component A periplasmic MID01_16700 PF13378 Enolase C-terminal domain-like MID01_16700 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MID01_16705 PF13193 AMP-binding enzyme C-terminal domain MID01_16705 PF00501 AMP-binding enzyme MID01_16710 PF00378 Enoyl-CoA hydratase/isomerase MID01_16715 PF00561 alpha/beta hydrolase fold MID01_16720 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MID01_16720 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MID01_16720 PF16582 Middle domain of thiamine pyrophosphate MID01_16725 PF00425 chorismate binding enzyme MID01_16730 PF01258 Prokaryotic dksA/traR C4-type zinc finger MID01_16735 PF00483 Nucleotidyl transferase MID01_16740 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MID01_16740 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain MID01_16740 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain MID01_16745 PF01370 NAD dependent epimerase/dehydratase family MID01_16750 PF13439 Glycosyltransferase Family 4 MID01_16750 PF00534 Glycosyl transferases group 1 MID01_16765 PF00534 Glycosyl transferases group 1 MID01_16765 PF13439 Glycosyltransferase Family 4 MID01_16770 PF01636 Phosphotransferase enzyme family MID01_16775 PF03073 TspO/MBR family MID01_16780 PF00343 Carbohydrate phosphorylase MID01_16785 PF00534 Glycosyl transferases group 1 MID01_16785 PF08323 Starch synthase catalytic domain MID01_16790 PF00483 Nucleotidyl transferase MID01_16795 PF00483 Nucleotidyl transferase MID01_16800 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) MID01_16800 PF02806 Alpha amylase, C-terminal all-beta domain MID01_16800 PF00128 Alpha amylase, catalytic domain MID01_16925 PF09515 Thiamine transporter protein (Thia_YuaJ) MID01_16930 PF00583 Acetyltransferase (GNAT) family MID01_16935 PF01145 SPFH domain / Band 7 family MID01_16935 PF15975 Flotillin MID01_16945 PF12867 DinB superfamily MID01_16955 PF00465 Iron-containing alcohol dehydrogenase MID01_16960 PF00171 Aldehyde dehydrogenase family MID01_16970 PF17735 Biofilm surface layer A MID01_16975 PF02080 TrkA-C domain MID01_16975 PF02254 TrkA-N domain MID01_16980 PF02386 Cation transport protein MID01_16985 PF05360 yiaA/B two helix domain MID01_16990 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase MID01_16990 PF13457 GW (Gly-Tryp) dipeptide domain MID01_16995 PF07690 Major Facilitator Superfamily MID01_17010 PF02673 Bacitracin resistance protein BacA MID01_17015 PF01594 AI-2E family transporter MID01_17020 PF02894 Oxidoreductase family, C-terminal alpha/beta domain MID01_17020 PF01408 Oxidoreductase family, NAD-binding Rossmann fold MID01_17025 PF06134 L-rhamnose isomerase (RhaA) MID01_17030 PF05336 L-rhamnose mutarotase MID01_17035 PF00370 FGGY family of carbohydrate kinases, N-terminal domain MID01_17035 PF02782 FGGY family of carbohydrate kinases, C-terminal domain MID01_17040 PF08220 DeoR-like helix-turn-helix domain MID01_17040 PF00455 DeoR C terminal sensor domain MID01_17045 PF00596 Class II Aldolase and Adducin N-terminal domain MID01_17050 PF00672 HAMP domain MID01_17050 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID01_17050 PF02743 Cache domain MID01_17055 PF02743 Cache domain MID01_17055 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID01_17055 PF00672 HAMP domain MID01_17060 PF02743 Cache domain MID01_17060 PF00672 HAMP domain MID01_17060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID01_17065 PF00672 HAMP domain MID01_17065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID01_17065 PF02743 Cache domain MID01_17080 PF01894 Uncharacterised protein family UPF0047 MID01_17090 PF16657 Maltogenic Amylase, C-terminal domain MID01_17090 PF00128 Alpha amylase, catalytic domain MID01_17095 PF03471 Transporter associated domain MID01_17095 PF00571 CBS domain MID01_17095 PF01595 Cyclin M transmembrane N-terminal domain MID01_17100 PF04298 Putative neutral zinc metallopeptidase MID01_17110 PF11458 Membrane-integrating protein Mistic MID01_17115 PF02254 TrkA-N domain MID01_17115 PF07885 Ion channel MID01_17120 PF08868 YugN-like family MID01_17130 PF00342 Phosphoglucose isomerase MID01_17135 PF00465 Iron-containing alcohol dehydrogenase MID01_17140 PF00465 Iron-containing alcohol dehydrogenase MID01_17145 PF04070 Domain of unknown function (DUF378) MID01_17150 PF00575 S1 RNA binding domain MID01_17155 PF00155 Aminotransferase class I and II MID01_17160 PF01037 Lrp/AsnC ligand binding domain MID01_17165 PF00561 alpha/beta hydrolase fold MID01_17165 PF08386 TAP-like protein MID01_17170 PF08958 Domain of unknown function (DUF1871) MID01_17175 PF00155 Aminotransferase class I and II MID01_17180 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID01_17180 PF00512 His Kinase A (phospho-acceptor) domain MID01_17185 PF08810 Kinase associated protein B MID01_17190 PF00929 Exonuclease MID01_17200 PF07690 Major Facilitator Superfamily MID01_17205 PF00905 Penicillin binding protein transpeptidase domain MID01_17205 PF00912 Transglycosylase MID01_17210 PF04134 Protein of unknown function, DUF393 MID01_17215 PF17328 Family of unknown function (DUF5366) MID01_17220 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain MID01_17220 PF17203 Single cache domain 3 MID01_17220 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID01_17220 PF00989 PAS fold MID01_17225 PF00072 Response regulator receiver domain MID01_17230 PF02608 ABC transporter substrate-binding protein PnrA-like MID01_17235 PF00005 ABC transporter MID01_17240 PF02653 Branched-chain amino acid transport system / permease component MID01_17245 PF02653 Branched-chain amino acid transport system / permease component MID01_17250 PF03390 2-hydroxycarboxylate transporter family MID01_17260 PF00361 Proton-conducting membrane transporter MID01_17260 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MID01_17260 PF13244 Domain of unknown function (DUF4040) MID01_17265 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter MID01_17270 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L MID01_17275 PF00361 Proton-conducting membrane transporter MID01_17280 PF01899 Na+/H+ ion antiporter subunit MID01_17285 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) MID01_17290 PF03334 Na+/H+ antiporter subunit MID01_17295 PF03061 Thioesterase superfamily MID01_17305 PF07730 Histidine kinase MID01_17305 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID01_17310 PF05952 Bacillus competence pheromone ComX MID01_17315 PF00348 Polyprenyl synthetase MID01_17320 PF08181 DegQ (SacQ) family MID01_17335 PF08668 HDOD domain MID01_17335 PF00563 EAL domain MID01_17340 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain MID01_17340 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain MID01_17340 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family MID01_17345 PF00857 Isochorismatase family MID01_17350 PF07997 Protein of unknown function (DUF1694) MID01_17355 PF14166 YueH-like protein MID01_17360 PF10676 Spore germination protein gerPA/gerPF MID01_17365 PF01594 AI-2E family transporter MID01_17370 PF10049 Protein of unknown function (DUF2283) MID01_17375 PF10842 Protein of unknown function (DUF2642) MID01_17380 PF01966 HD domain MID01_17385 PF00106 short chain dehydrogenase MID01_17390 PF17355 Family of unknown function (DUF5383) MID01_17400 PF01580 FtsK/SpoIIIE family MID01_17400 PF12538 DNA transporter MID01_17405 PF10140 WXG100 protein secretion system (Wss), protein YukC MID01_17410 PF08817 WXG100 protein secretion system (Wss), protein YukD MID01_17415 PF06013 Proteins of 100 residues with WXG MID01_17420 PF17853 GGDEF-like domain MID01_17420 PF06018 CodY GAF-like domain MID01_17420 PF13556 PucR C-terminal helix-turn-helix domain MID01_17425 PF01262 Alanine dehydrogenase/PNT, C-terminal domain MID01_17425 PF05222 Alanine dehydrogenase/PNT, N-terminal domain MID01_17430 PF10042 Uncharacterized conserved protein (DUF2278) MID01_17435 PF03621 MbtH-like protein MID01_17440 PF00975 Thioesterase domain MID01_17440 PF00550 Phosphopantetheine attachment site MID01_17440 PF00668 Condensation domain MID01_17440 PF13193 AMP-binding enzyme C-terminal domain MID01_17440 PF00501 AMP-binding enzyme MID01_17445 PF00550 Phosphopantetheine attachment site MID01_17445 PF00857 Isochorismatase family MID01_17450 PF00501 AMP-binding enzyme MID01_17450 PF13193 AMP-binding enzyme C-terminal domain MID01_17455 PF00425 chorismate binding enzyme MID01_17460 PF00106 short chain dehydrogenase MID01_17465 PF00756 Putative esterase MID01_17470 PF00174 Oxidoreductase molybdopterin binding domain MID01_17475 PF02632 BioY family MID01_17480 PF03553 Na+/H+ antiporter family MID01_17480 PF13726 Na+-H+ antiporter family MID01_17485 PF02789 Cytosol aminopeptidase family, N-terminal domain MID01_17485 PF00883 Cytosol aminopeptidase family, catalytic domain MID01_17490 PF02681 Divergent PAP2 family MID01_17495 PF06725 3D domain MID01_17500 PF14068 Putative membrane protein MID01_17505 PF17302 Family of unknown function (DUF5351) MID01_17510 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID01_17515 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID01_17525 PF00478 IMP dehydrogenase / GMP reductase domain MID01_17530 PF04299 Putative FMN-binding domain MID01_17535 PF00583 Acetyltransferase (GNAT) family MID01_17540 PF01521 Iron-sulphur cluster biosynthesis MID01_17545 PF01678 Diaminopimelate epimerase MID01_17550 PF07662 Na+ dependent nucleoside transporter C-terminus MID01_17550 PF01773 Na+ dependent nucleoside transporter N-terminus MID01_17555 PF07293 Protein of unknown function (DUF1450) MID01_17560 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID01_17565 PF07315 Protein of unknown function (DUF1462) MID01_17570 PF01106 NifU-like domain MID01_17575 PF07676 WD40-like Beta Propeller Repeat MID01_17575 PF00326 Prolyl oligopeptidase family MID01_17580 PF08544 GHMP kinases C terminal MID01_17580 PF00288 GHMP kinases N terminal domain MID01_17585 PF00291 Pyridoxal-phosphate dependent enzyme MID01_17590 PF03447 Homoserine dehydrogenase, NAD binding domain MID01_17590 PF00742 Homoserine dehydrogenase MID01_17590 PF01842 ACT domain MID01_17600 PF04608 Phosphatidylglycerophosphatase A MID01_17605 PF13344 Haloacid dehalogenase-like hydrolase MID01_17610 PF01934 Protein of unknown function DUF86 MID01_17615 PF06265 Protein of unknown function (DUF1027) MID01_17620 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) MID01_17625 PF04055 Radical SAM superfamily MID01_17625 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family MID01_17630 PF01551 Peptidase family M23 MID01_17635 PF09560 Sporulation protein YunB (Spo_YunB) MID01_17640 PF08827 Domain of unknown function (DUF1805) MID01_17645 PF02872 5'-nucleotidase, C-terminal domain MID01_17650 PF01925 Sulfite exporter TauE/SafE MID01_17655 PF01904 Protein of unknown function DUF72 MID01_17665 PF01979 Amidohydrolase family MID01_17670 PF13556 PucR C-terminal helix-turn-helix domain MID01_17670 PF07905 Purine catabolism regulatory protein-like family MID01_17670 PF17853 GGDEF-like domain MID01_17675 PF00860 Permease family MID01_17680 PF00860 Permease family MID01_17685 PF01014 Uricase MID01_17685 PF09349 OHCU decarboxylase MID01_17690 PF00576 HIUase/Transthyretin family MID01_17695 PF09680 Family of unknown function MID01_17700 PF01799 [2Fe-2S] binding domain MID01_17700 PF00111 2Fe-2S iron-sulfur cluster binding domain MID01_17705 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain MID01_17705 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase MID01_17710 PF00941 FAD binding domain in molybdopterin dehydrogenase MID01_17715 PF12804 MobA-like NTP transferase domain MID01_17720 PF02625 XdhC and CoxI family MID01_17720 PF13478 XdhC Rossmann domain MID01_17725 PF00266 Aminotransferase class-V MID01_17730 PF01546 Peptidase family M20/M25/M40 MID01_17740 PF04231 Endonuclease I MID01_17745 PF00005 ABC transporter MID01_17745 PF17912 MalK OB fold domain MID01_17745 PF03459 TOBE domain MID01_17750 PF00392 Bacterial regulatory proteins, gntR family MID01_17750 PF07702 UTRA domain MID01_17755 PF00294 pfkB family carbohydrate kinase MID01_17760 PF00528 Binding-protein-dependent transport system inner membrane component MID01_17765 PF00528 Binding-protein-dependent transport system inner membrane component MID01_17770 PF01547 Bacterial extracellular solute-binding protein MID01_17775 PF01380 SIS domain MID01_17780 PF01541 GIY-YIG catalytic domain MID01_17785 PF01266 FAD dependent oxidoreductase MID01_17800 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MID01_17810 PF01458 Uncharacterized protein family (UPF0051) MID01_17815 PF01592 NifU-like N terminal domain MID01_17820 PF00266 Aminotransferase class-V MID01_17825 PF01458 Uncharacterized protein family (UPF0051) MID01_17830 PF00005 ABC transporter MID01_17840 PF02627 Carboxymuconolactone decarboxylase family MID01_17845 PF03180 NLPA lipoprotein MID01_17850 PF00528 Binding-protein-dependent transport system inner membrane component MID01_17855 PF09383 NIL domain MID01_17855 PF00005 ABC transporter MID01_17860 PF02036 SCP-2 sterol transfer family MID01_17865 PF00085 Thioredoxin MID01_17870 PF01751 Toprim domain MID01_17875 PF10830 Protein of unknown function (DUF2553) MID01_17880 PF01597 Glycine cleavage H-protein MID01_17885 PF03960 ArsC family MID01_17890 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MID01_17890 PF02770 Acyl-CoA dehydrogenase, middle domain MID01_17890 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MID01_17895 PF00108 Thiolase, N-terminal domain MID01_17895 PF02803 Thiolase, C-terminal domain MID01_17900 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain MID01_17900 PF00378 Enoyl-CoA hydratase/isomerase MID01_17900 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MID01_17905 PF14115 YuzL-like protein MID01_17910 PF01619 Proline dehydrogenase MID01_17920 PF07875 Coat F domain MID01_17925 PF01047 MarR family MID01_17930 PF07690 Major Facilitator Superfamily MID01_17935 PF14552 Tautomerase enzyme MID01_17945 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID01_17945 PF03466 LysR substrate binding domain MID01_17950 PF10835 Protein of unknown function (DUF2573) MID01_17955 PF00005 ABC transporter MID01_17960 PF14039 YusW-like protein MID01_17970 PF00106 short chain dehydrogenase MID01_17975 PF00210 Ferritin-like domain MID01_17980 PF13180 PDZ domain MID01_17985 PF00486 Transcriptional regulatory protein, C terminal MID01_17985 PF00072 Response regulator receiver domain MID01_17990 PF00512 His Kinase A (phospho-acceptor) domain MID01_17990 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID01_17990 PF00672 HAMP domain MID01_18000 PF00440 Bacterial regulatory proteins, tetR family MID01_18005 PF10415 Fumarase C C-terminus MID01_18005 PF00206 Lyase MID01_18010 PF13113 Protein of unknown function (DUF3970) MID01_18015 PF03323 Bacillus/Clostridium GerA spore germination protein MID01_18020 PF03845 Spore germination protein MID01_18025 PF05504 Spore germination B3/ GerAC like, C-terminal MID01_18030 PF00196 Bacterial regulatory proteins, luxR family MID01_18030 PF00072 Response regulator receiver domain MID01_18035 PF00672 HAMP domain MID01_18035 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID01_18035 PF07730 Histidine kinase MID01_18040 PF09922 Cell wall-active antibiotics response 4TMS YvqF MID01_18045 PF13349 Putative adhesin MID01_18050 PF04012 PspA/IM30 family MID01_18060 PF07690 Major Facilitator Superfamily MID01_18065 PF01923 Cobalamin adenosyltransferase MID01_18070 PF00005 ABC transporter MID01_18075 PF01032 FecCD transport family MID01_18080 PF01497 Periplasmic binding protein MID01_18085 PF00106 short chain dehydrogenase MID01_18090 PF08450 SMP-30/Gluconolactonase/LRE-like region MID01_18095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID01_18095 PF00512 His Kinase A (phospho-acceptor) domain MID01_18100 PF00072 Response regulator receiver domain MID01_18100 PF00486 Transcriptional regulatory protein, C terminal MID01_18110 PF04545 Sigma-70, region 4 MID01_18115 PF12841 YvrJ protein family MID01_18120 PF00190 Cupin MID01_18125 PF14184 Regulatory protein YrvL MID01_18130 PF12704 MacB-like periplasmic core domain MID01_18130 PF02687 FtsX-like permease family MID01_18135 PF00005 ABC transporter MID01_18140 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion MID01_18145 PF00005 ABC transporter MID01_18150 PF01032 FecCD transport family MID01_18155 PF01032 FecCD transport family MID01_18160 PF01497 Periplasmic binding protein MID01_18165 PF13520 Amino acid permease MID01_18170 PF09575 Small spore protein J (Spore_SspJ) MID01_18175 PF04307 LexA-binding, inner membrane-associated putative hydrolase MID01_18180 PF00884 Sulfatase MID01_18185 PF12728 Helix-turn-helix domain MID01_18185 PF12727 PBP superfamily domain MID01_18195 PF00528 Binding-protein-dependent transport system inner membrane component MID01_18200 PF00248 Aldo/keto reductase family MID01_18210 PF00999 Sodium/hydrogen exchanger family MID01_18215 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain MID01_18215 PF01077 Nitrite and sulphite reductase 4Fe-4S domain MID01_18220 PF00175 Oxidoreductase NAD-binding domain MID01_18220 PF00258 Flavodoxin MID01_18220 PF00667 FAD binding domain MID01_18225 PF13538 UvrD-like helicase C-terminal domain MID01_18235 PF03458 UPF0126 domain MID01_18240 PF02600 Disulfide bond formation protein DsbB MID01_18245 PF13462 Thioredoxin MID01_18250 PF00403 Heavy-metal-associated domain MID01_18255 PF00403 Heavy-metal-associated domain MID01_18260 PF00403 Heavy-metal-associated domain MID01_18265 PF02583 Metal-sensitive transcriptional repressor MID01_18270 PF02894 Oxidoreductase family, C-terminal alpha/beta domain MID01_18270 PF01408 Oxidoreductase family, NAD-binding Rossmann fold MID01_18275 PF02525 Flavodoxin-like fold MID01_18285 PF17314 Family of unknown function (DUF5360) MID01_18290 PF00893 Small Multidrug Resistance protein MID01_18295 PF00440 Bacterial regulatory proteins, tetR family MID01_18300 PF00106 short chain dehydrogenase MID01_18325 PF01668 SmpB protein MID01_18330 PF17876 Cold shock domain MID01_18330 PF08206 Ribonuclease B OB domain MID01_18330 PF00773 RNB domain MID01_18330 PF00575 S1 RNA binding domain MID01_18335 PF12146 Serine aminopeptidase, S33 MID01_18340 PF03840 Preprotein translocase SecG subunit MID01_18345 PF00561 alpha/beta hydrolase fold MID01_18350 PF01381 Helix-turn-helix MID01_18365 PF01638 HxlR-like helix-turn-helix MID01_18370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MID01_18370 PF12729 Four helix bundle sensory module for signal transduction MID01_18370 PF00672 HAMP domain MID01_18375 PF00512 His Kinase A (phospho-acceptor) domain MID01_18375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID01_18380 PF00486 Transcriptional regulatory protein, C terminal MID01_18380 PF00072 Response regulator receiver domain MID01_18395 PF00005 ABC transporter MID01_18405 PF02052 Gallidermin MID01_18410 PF05147 Lanthionine synthetase C-like protein MID01_18415 PF00005 ABC transporter MID01_18420 PF14028 Lantibiotic biosynthesis dehydratase C-term MID01_18420 PF04738 Lantibiotic dehydratase, N terminus MID01_18425 PF00528 Binding-protein-dependent transport system inner membrane component MID01_18430 PF04069 Substrate binding domain of ABC-type glycine betaine transport system MID01_18435 PF00528 Binding-protein-dependent transport system inner membrane component MID01_18440 PF00571 CBS domain MID01_18440 PF00005 ABC transporter MID01_18445 PF12802 MarR family MID01_18450 PF00528 Binding-protein-dependent transport system inner membrane component MID01_18455 PF04069 Substrate binding domain of ABC-type glycine betaine transport system MID01_18460 PF00528 Binding-protein-dependent transport system inner membrane component MID01_18465 PF00005 ABC transporter MID01_18465 PF00571 CBS domain MID01_18470 PF12802 MarR family MID01_18475 PF01914 MarC family integral membrane protein MID01_18480 PF08000 Bacterial PH domain MID01_18480 PF11724 YvbH-like oligomerisation region MID01_18490 PF13240 zinc-ribbon domain MID01_18495 PF00583 Acetyltransferase (GNAT) family MID01_18500 PF00113 Enolase, C-terminal TIM barrel domain MID01_18500 PF03952 Enolase, N-terminal domain MID01_18505 PF06415 BPG-independent PGAM N-terminus (iPGM_N) MID01_18505 PF01676 Metalloenzyme superfamily MID01_18510 PF00121 Triosephosphate isomerase MID01_18515 PF00162 Phosphoglycerate kinase MID01_18520 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MID01_18520 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain MID01_18525 PF04198 Putative sugar-binding domain MID01_18530 PF00083 Sugar (and other) transporter MID01_18535 PF00392 Bacterial regulatory proteins, gntR family MID01_18540 PF00296 Luciferase-like monooxygenase MID01_18545 PF03466 LysR substrate binding domain MID01_18545 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID01_18550 PF00892 EamA-like transporter family MID01_18555 PF00324 Amino acid permease MID01_18560 PF00704 Glycosyl hydrolases family 18 MID01_18565 PF02589 LUD domain MID01_18570 PF02589 LUD domain MID01_18570 PF11870 Domain of unknown function (DUF3390) MID01_18570 PF13183 4Fe-4S dicluster domain MID01_18575 PF02754 Cysteine-rich domain MID01_18580 PF00072 Response regulator receiver domain MID01_18580 PF00196 Bacterial regulatory proteins, luxR family MID01_18585 PF07730 Histidine kinase MID01_18585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID01_18595 PF00005 ABC transporter MID01_18600 PF12697 Alpha/beta hydrolase family MID01_18605 PF13426 PAS domain MID01_18605 PF07228 Stage II sporulation protein E (SpoIIE) MID01_18610 PF07745 Glycosyl hydrolase family 53 MID01_18615 PF08533 Beta-galactosidase C-terminal domain MID01_18615 PF08532 Beta-galactosidase trimerisation domain MID01_18615 PF02449 Beta-galactosidase MID01_18620 PF00528 Binding-protein-dependent transport system inner membrane component MID01_18625 PF00528 Binding-protein-dependent transport system inner membrane component MID01_18630 PF13416 Bacterial extracellular solute-binding protein MID01_18635 PF00356 Bacterial regulatory proteins, lacI family MID01_18640 PF07729 FCD domain MID01_18640 PF00392 Bacterial regulatory proteins, gntR family MID01_18645 PF02652 L-lactate permease MID01_18650 PF04552 Sigma-54, DNA binding domain MID01_18650 PF00309 Sigma-54 factor, Activator interacting domain (AID) MID01_18650 PF04963 Sigma-54 factor, core binding domain MID01_18655 PF04963 Sigma-54 factor, core binding domain MID01_18655 PF04552 Sigma-54, DNA binding domain MID01_18655 PF00309 Sigma-54 factor, Activator interacting domain (AID) MID01_18660 PF09628 YvfG protein MID01_18665 PF04230 Polysaccharide pyruvyl transferase MID01_18670 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family MID01_18675 PF17836 PglD N-terminal domain MID01_18675 PF00132 Bacterial transferase hexapeptide (six repeats) MID01_18680 PF02397 Bacterial sugar transferase MID01_18685 PF01943 Polysaccharide biosynthesis protein MID01_18685 PF14667 Polysaccharide biosynthesis C-terminal domain MID01_18690 PF00535 Glycosyl transferase family 2 MID01_18695 PF04230 Polysaccharide pyruvyl transferase MID01_18700 PF00535 Glycosyl transferase family 2 MID01_18710 PF13439 Glycosyltransferase Family 4 MID01_18710 PF00534 Glycosyl transferases group 1 MID01_18715 PF00535 Glycosyl transferase family 2 MID01_18720 PF13439 Glycosyltransferase Family 4 MID01_18720 PF00534 Glycosyl transferases group 1 MID01_18725 PF02719 Polysaccharide biosynthesis protein MID01_18730 PF13614 AAA domain MID01_18740 PF01381 Helix-turn-helix MID01_18740 PF08671 Anti-repressor SinI MID01_18745 PF00135 Carboxylesterase family MID01_18755 PF05870 Phenolic acid decarboxylase (PAD) MID01_18765 PF01177 Asp/Glu/Hydantoin racemase MID01_18770 PF00144 Beta-lactamase MID01_18770 PF11954 Domain of unknown function (DUF3471) MID01_18775 PF02435 Levansucrase/Invertase MID01_18780 PF08244 Glycosyl hydrolases family 32 C terminal MID01_18780 PF00251 Glycosyl hydrolases family 32 N-terminal domain MID01_18785 PF13520 Amino acid permease MID01_18790 PF00440 Bacterial regulatory proteins, tetR family MID01_18790 PF17934 Tetracyclin repressor-like, C-terminal domain MID01_18795 PF00893 Small Multidrug Resistance protein MID01_18800 PF00893 Small Multidrug Resistance protein MID01_18805 PF11553 Protein of unknown function (DUF3231) MID01_18815 PF00574 Clp protease MID01_18820 PF13419 Haloacid dehalogenase-like hydrolase MID01_18825 PF16657 Maltogenic Amylase, C-terminal domain MID01_18825 PF00128 Alpha amylase, catalytic domain MID01_18830 PF03632 Glycosyl hydrolase family 65 central catalytic domain MID01_18830 PF03636 Glycosyl hydrolase family 65, N-terminal domain MID01_18830 PF03633 Glycosyl hydrolase family 65, C-terminal domain MID01_18835 PF06691 Protein of unknown function (DUF1189) MID01_18840 PF00528 Binding-protein-dependent transport system inner membrane component MID01_18845 PF00528 Binding-protein-dependent transport system inner membrane component MID01_18850 PF13416 Bacterial extracellular solute-binding protein MID01_18855 PF00128 Alpha amylase, catalytic domain MID01_18855 PF02903 Alpha amylase, N-terminal ig-like domain MID01_18860 PF00356 Bacterial regulatory proteins, lacI family MID01_18865 PF03641 Possible lysine decarboxylase MID01_18870 PF03819 MazG nucleotide pyrophosphohydrolase domain MID01_18875 PF01740 STAS domain MID01_18875 PF00916 Sulfate permease family MID01_18880 PF00484 Carbonic anhydrase MID01_18885 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MID01_18885 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MID01_18890 PF02687 FtsX-like permease family MID01_18895 PF00005 ABC transporter MID01_18900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID01_18905 PF00072 Response regulator receiver domain MID01_18905 PF00486 Transcriptional regulatory protein, C terminal MID01_18920 PF00797 N-acetyltransferase MID01_18925 PF00381 PTS HPr component phosphorylation site MID01_18930 PF10298 WhiA N-terminal LAGLIDADG-like domain MID01_18930 PF14527 WhiA LAGLIDADG-like domain MID01_18930 PF02650 WhiA C-terminal HTH domain MID01_18935 PF01933 Uncharacterised protein family UPF0052 MID01_18940 PF03668 P-loop ATPase protein family MID01_18945 PF00293 NUDIX domain MID01_18950 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID01_18955 PF00877 NlpC/P60 family MID01_18965 PF00664 ABC transporter transmembrane region MID01_18965 PF00005 ABC transporter MID01_18985 PF01502 Phosphoribosyl-AMP cyclohydrolase MID01_18985 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase MID01_18990 PF00977 Histidine biosynthesis protein MID01_18995 PF00977 Histidine biosynthesis protein MID01_19000 PF00117 Glutamine amidotransferase class-I MID01_19005 PF00475 Imidazoleglycerol-phosphate dehydratase MID01_19010 PF00815 Histidinol dehydrogenase MID01_19015 PF01634 ATP phosphoribosyltransferase MID01_19020 PF13393 Histidyl-tRNA synthetase MID01_19025 PF13529 Peptidase_C39 like family MID01_19030 PF03211 Pectate lyase MID01_19035 PF14602 Hexapeptide repeat of succinyl-transferase MID01_19040 PF13419 Haloacid dehalogenase-like hydrolase MID01_19045 PF07670 Nucleoside recognition MID01_19050 PF01790 Prolipoprotein diacylglyceryl transferase MID01_19055 PF07475 HPr Serine kinase C-terminal domain MID01_19055 PF02603 HPr Serine kinase N terminus MID01_19060 PF01979 Amidohydrolase family MID01_19065 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase MID01_19070 PF00392 Bacterial regulatory proteins, gntR family MID01_19070 PF07702 UTRA domain MID01_19075 PF00149 Calcineurin-like phosphoesterase MID01_19080 PF01047 MarR family MID01_19090 PF16715 Cyclodipeptide synthase MID01_19095 PF01047 MarR family MID01_19100 PF07690 Major Facilitator Superfamily MID01_19105 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV MID01_19110 PF04024 PspC domain MID01_19115 PF13349 Putative adhesin MID01_19135 PF00005 ABC transporter MID01_19135 PF17755 UvrA DNA-binding domain MID01_19135 PF17760 UvrA interaction domain MID01_19140 PF00271 Helicase conserved C-terminal domain MID01_19140 PF04851 Type III restriction enzyme, res subunit MID01_19140 PF02151 UvrB/uvrC motif MID01_19140 PF12344 Ultra-violet resistance protein B MID01_19140 PF17757 UvrB interaction domain MID01_19145 PF09964 Uncharacterized protein conserved in bacteria (DUF2198) MID01_19150 PF00391 PEP-utilising enzyme, mobile domain MID01_19150 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain MID01_19155 PF00440 Bacterial regulatory proteins, tetR family MID01_19160 PF07690 Major Facilitator Superfamily MID01_19165 PF17820 PDZ domain MID01_19170 PF17423 Swarming motility protein MID01_19175 PF17820 PDZ domain MID01_19175 PF01471 Putative peptidoglycan binding domain MID01_19175 PF03572 Peptidase family S41 MID01_19180 PF18075 FtsX extracellular domain MID01_19180 PF02687 FtsX-like permease family MID01_19185 PF00005 ABC transporter MID01_19190 PF13442 Cytochrome C oxidase, cbb3-type, subunit III MID01_19195 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 MID01_19195 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) MID01_19205 PF07516 SecA Wing and Scaffold domain MID01_19205 PF01043 SecA preprotein cross-linking domain MID01_19205 PF02810 SEC-C motif MID01_19205 PF07517 SecA DEAD-like domain MID01_19210 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus MID01_19210 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein MID01_19225 PF02561 Flagellar protein FliS MID01_19230 PF02465 Flagellar hook-associated protein 2 N-terminus MID01_19230 PF07196 Flagellin hook IN motif MID01_19230 PF07195 Flagellar hook-associated protein 2 C-terminus MID01_19235 PF03646 FlaG protein MID01_19240 PF00700 Bacterial flagellin C-terminal helical region MID01_19240 PF00669 Bacterial flagellin N-terminal helical region MID01_19245 PF02599 Global regulator protein family MID01_19250 PF02623 FliW protein MID01_19260 PF00669 Bacterial flagellin N-terminal helical region MID01_19260 PF00700 Bacterial flagellin C-terminal helical region MID01_19265 PF00460 Flagella basal body rod protein MID01_19265 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MID01_19270 PF05130 FlgN protein MID01_19275 PF04316 Anti-sigma-28 factor, FlgM MID01_19290 PF10719 Late competence development protein ComFB MID01_19295 PF00271 Helicase conserved C-terminal domain MID01_19295 PF04851 Type III restriction enzyme, res subunit MID01_19300 PF02645 Uncharacterised protein, DegV family COG1307 MID01_19305 PF00196 Bacterial regulatory proteins, luxR family MID01_19305 PF00072 Response regulator receiver domain MID01_19310 PF05384 Sensor protein DegS MID01_19310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID01_19310 PF07730 Histidine kinase MID01_19315 PF09186 Domain of unknown function (DUF1949) MID01_19315 PF01205 Uncharacterized protein family UPF0029 MID01_19320 PF03816 Cell envelope-related transcriptional attenuator domain MID01_19325 PF00953 Glycosyl transferase family 4 MID01_19335 PF00535 Glycosyl transferase family 2 MID01_19340 PF02706 Chain length determinant protein MID01_19345 PF04932 O-Antigen ligase MID01_19350 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MID01_19350 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain MID01_19350 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain MID01_19355 PF00534 Glycosyl transferases group 1 MID01_19355 PF13439 Glycosyltransferase Family 4 MID01_19360 PF01943 Polysaccharide biosynthesis protein MID01_19360 PF14667 Polysaccharide biosynthesis C-terminal domain MID01_19365 PF02397 Bacterial sugar transferase MID01_19370 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 MID01_19370 PF00535 Glycosyl transferase family 2 MID01_19375 PF01520 N-acetylmuramoyl-L-alanine amidase MID01_19375 PF04122 Putative cell wall binding repeat 2 MID01_19380 PF04122 Putative cell wall binding repeat 2 MID01_19380 PF08486 Stage II sporulation protein MID01_19390 PF03816 Cell envelope-related transcriptional attenuator domain MID01_19395 PF02350 UDP-N-acetylglucosamine 2-epimerase MID01_19400 PF00535 Glycosyl transferase family 2 MID01_19400 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 MID01_19405 PF00534 Glycosyl transferases group 1 MID01_19415 PF00483 Nucleotidyl transferase MID01_19420 PF00005 ABC transporter MID01_19425 PF01061 ABC-2 type transporter MID01_19430 PF00535 Glycosyl transferase family 2 MID01_19430 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase MID01_19435 PF00535 Glycosyl transferase family 2 MID01_19440 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase MID01_19445 PF01467 Cytidylyltransferase-like MID01_19450 PF03808 Glycosyl transferase WecB/TagA/CpsF family MID01_19455 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase MID01_19460 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase MID01_19465 PF08240 Alcohol dehydrogenase GroES-like domain MID01_19465 PF16912 Glucose dehydrogenase C-terminus MID01_19470 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase MID01_19475 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase MID01_19480 PF05036 Sporulation related domain MID01_19480 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase MID01_19480 PF08239 Bacterial SH3 domain MID01_19485 PF01238 Phosphomannose isomerase type I MID01_19490 PF03323 Bacillus/Clostridium GerA spore germination protein MID01_19495 PF03845 Spore germination protein MID01_19500 PF05504 Spore germination B3/ GerAC like, C-terminal MID01_19505 PF00083 Sugar (and other) transporter MID01_19510 PF03816 Cell envelope-related transcriptional attenuator domain MID01_19520 PF00877 NlpC/P60 family MID01_19530 PF09587 Bacterial capsule synthesis protein PGA_cap MID01_19535 PF14102 Capsule biosynthesis CapC MID01_19540 PF08245 Mur ligase middle domain MID01_19545 PF00356 Bacterial regulatory proteins, lacI family MID01_19550 PF00294 pfkB family carbohydrate kinase MID01_19555 PF05025 RbsD / FucU transport protein family MID01_19560 PF00005 ABC transporter MID01_19565 PF02653 Branched-chain amino acid transport system / permease component MID01_19570 PF13407 Periplasmic binding protein domain MID01_19575 PF08239 Bacterial SH3 domain MID01_19580 PF13031 Protein of unknown function (DUF3892) MID01_19585 PF02525 Flavodoxin-like fold MID01_19590 PF03306 Alpha-acetolactate decarboxylase MID01_19595 PF00205 Thiamine pyrophosphate enzyme, central domain MID01_19595 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MID01_19595 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MID01_19600 PF03466 LysR substrate binding domain MID01_19600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID01_19605 PF02040 Arsenical pump membrane protein MID01_19620 PF08757 CotH kinase protein MID01_19635 PF13789 Domain of unknown function (DUF4181) MID01_19645 PF01037 Lrp/AsnC ligand binding domain MID01_19645 PF13404 AsnC-type helix-turn-helix domain MID01_19650 PF02417 Chromate transporter MID01_19655 PF02417 Chromate transporter MID01_19660 PF04493 Endonuclease V MID01_19670 PF04740 LXG domain of WXG superfamily MID01_19670 PF14431 YwqJ-like deaminase MID01_19670 PF14449 Pre-toxin TG MID01_19680 PF16888 Domain of unknown function (DUF5082) MID01_19690 PF09234 Domain of unknown function (DUF1963) MID01_19695 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MID01_19695 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain MID01_19695 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain MID01_19705 PF13614 AAA domain MID01_19710 PF13807 G-rich domain on putative tyrosine kinase MID01_19710 PF02706 Chain length determinant protein MID01_19720 PF04434 SWIM zinc finger MID01_19725 PF00176 SNF2 family N-terminal domain MID01_19725 PF12419 SNF2 Helicase protein MID01_19725 PF00271 Helicase conserved C-terminal domain MID01_19735 PF00455 DeoR C terminal sensor domain MID01_19735 PF08220 DeoR-like helix-turn-helix domain MID01_19740 PF00436 Single-strand binding protein family MID01_19750 PF14183 YwpF-like protein MID01_19755 PF04203 Sortase domain MID01_19765 PF00072 Response regulator receiver domain MID01_19765 PF04397 LytTr DNA-binding domain MID01_19775 PF06580 Histidine kinase MID01_19775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID01_19780 PF01741 Large-conductance mechanosensitive channel, MscL MID01_19785 PF07977 FabA-like domain MID01_19790 PF18801 response regulator aspartate phosphatase H, N terminal MID01_19795 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MID01_19795 PF00460 Flagella basal body rod protein MID01_19800 PF00460 Flagella basal body rod protein MID01_19800 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MID01_19810 PF12116 Stage III sporulation protein D MID01_19820 PF01047 MarR family MID01_19825 PF07690 Major Facilitator Superfamily MID01_19830 PF13229 Right handed beta helix region MID01_19835 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin MID01_19840 PF07690 Major Facilitator Superfamily MID01_19845 PF00857 Isochorismatase family MID01_19855 PF00909 Ammonium Transporter Family MID01_19860 PF00543 Nitrogen regulatory protein P-II MID01_19865 PF01569 PAP2 superfamily MID01_19870 PF04892 VanZ like family MID01_19875 PF01551 Peptidase family M23 MID01_19880 PF00583 Acetyltransferase (GNAT) family MID01_19885 PF17319 Family of unknown function (DUF5362) MID01_19895 PF17370 Family of unknown function (DUF5392) MID01_19900 PF13091 PLD-like domain MID01_19900 PF13396 Phospholipase_D-nuclease N-terminal MID01_19905 PF07739 TipAS antibiotic-recognition domain MID01_19905 PF13411 MerR HTH family regulatory protein MID01_19910 PF17319 Family of unknown function (DUF5362) MID01_19915 PF13460 NAD(P)H-binding MID01_19920 PF02082 Transcriptional regulator MID01_19925 PF00449 Urease alpha-subunit, N-terminal domain MID01_19925 PF01979 Amidohydrolase family MID01_19930 PF00699 Urease beta subunit MID01_19935 PF00547 Urease, gamma subunit MID01_19950 PF05532 CsbD-like MID01_19960 PF18801 response regulator aspartate phosphatase H, N terminal MID01_19960 PF17874 MalT-like TPR region MID01_19965 PF04055 Radical SAM superfamily MID01_19965 PF06463 Molybdenum Cofactor Synthesis C MID01_19970 PF02634 FdhD/NarQ family MID01_19980 PF00092 von Willebrand factor type A domain MID01_19990 PF00092 von Willebrand factor type A domain MID01_19995 PF08486 Stage II sporulation protein MID01_20000 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) MID01_20005 PF08680 TATA-box binding MID01_20010 PF06612 Protein of unknown function (DUF1146) MID01_20020 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain MID01_20020 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain MID01_20025 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MID01_20025 PF02874 ATP synthase alpha/beta family, beta-barrel domain MID01_20030 PF00231 ATP synthase MID01_20035 PF00306 ATP synthase alpha/beta chain, C terminal domain MID01_20035 PF02874 ATP synthase alpha/beta family, beta-barrel domain MID01_20035 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MID01_20040 PF00213 ATP synthase delta (OSCP) subunit MID01_20045 PF00430 ATP synthase B/B' CF(0) MID01_20050 PF00137 ATP synthase subunit C MID01_20055 PF00119 ATP synthase A chain MID01_20060 PF03899 ATP synthase I chain MID01_20070 PF00464 Serine hydroxymethyltransferase MID01_20075 PF04260 Protein of unknown function (DUF436) MID01_20080 PF02502 Ribose/Galactose Isomerase MID01_20085 PF01451 Low molecular weight phosphotyrosine protein phosphatase MID01_20090 PF02659 Putative manganese efflux pump MID01_20095 PF03481 Putative GTP-binding controlling metal-binding MID01_20095 PF01300 Telomere recombination MID01_20105 PF09551 Stage II sporulation protein R (spore_II_R) MID01_20110 PF17094 Uncharacterised protein family (UPF0715) MID01_20115 PF17247 Family of unknown function (DUF5316) MID01_20120 PF17827 PrmC N-terminal domain MID01_20120 PF05175 Methyltransferase small domain MID01_20125 PF00472 RF-1 domain MID01_20125 PF03462 PCRF domain MID01_20130 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MID01_20135 PF13411 MerR HTH family regulatory protein MID01_20140 PF03547 Membrane transport protein MID01_20145 PF03949 Malic enzyme, NAD binding domain MID01_20145 PF00390 Malic enzyme, N-terminal domain MID01_20150 PF00265 Thymidine kinase MID01_20155 PF01197 Ribosomal protein L31 MID01_20160 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MID01_20160 PF07497 Rho termination factor, RNA-binding domain MID01_20160 PF07498 Rho termination factor, N-terminal domain MID01_20170 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded MID01_20175 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) MID01_20180 PF00923 Transaldolase/Fructose-6-phosphate aldolase MID01_20185 PF01116 Fructose-bisphosphate aldolase class-II MID01_20190 PF00072 Response regulator receiver domain MID01_20195 PF10740 Domain of unknown function (DUF2529) MID01_20200 PF06418 CTP synthase N-terminus MID01_20200 PF00117 Glutamine amidotransferase class-I MID01_20205 PF05066 HB1, ASXL, restriction endonuclease HTH domain MID01_20210 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MID01_20210 PF02770 Acyl-CoA dehydrogenase, middle domain MID01_20210 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MID01_20215 PF02754 Cysteine-rich domain MID01_20215 PF13183 4Fe-4S dicluster domain MID01_20220 PF13091 PLD-like domain MID01_20225 PF03851 UV-endonuclease UvdE MID01_20235 PF01872 RibD C-terminal domain MID01_20240 PF00005 ABC transporter MID01_20240 PF00664 ABC transporter transmembrane region MID01_20245 PF13091 PLD-like domain MID01_20245 PF13396 Phospholipase_D-nuclease N-terminal MID01_20255 PF02665 Nitrate reductase gamma subunit MID01_20260 PF02613 Nitrate reductase delta subunit MID01_20265 PF13247 4Fe-4S dicluster domain MID01_20265 PF14711 Respiratory nitrate reductase beta C-terminal MID01_20270 PF14710 Respiratory nitrate reductase alpha N-terminal MID01_20270 PF00384 Molybdopterin oxidoreductase MID01_20270 PF01568 Molydopterin dinucleotide binding domain MID01_20280 PF14256 YwiC-like protein MID01_20285 PF00325 Bacterial regulatory proteins, crp family MID01_20285 PF00027 Cyclic nucleotide-binding domain MID01_20290 PF07690 Major Facilitator Superfamily MID01_20295 PF00750 tRNA synthetases class I (R) MID01_20295 PF05746 DALR anticodon binding domain MID01_20295 PF03485 Arginyl tRNA synthetase N terminal domain MID01_20300 PF09148 Domain of unknown function (DUF1934) MID01_20305 PF11420 Bacteriocin subtilosin A MID01_20315 PF05402 Coenzyme PQQ synthesis protein D (PqqD) MID01_20315 PF13186 Iron-sulfur cluster-binding domain MID01_20315 PF04055 Radical SAM superfamily MID01_20325 PF00005 ABC transporter MID01_20335 PF05193 Peptidase M16 inactive domain MID01_20340 PF00675 Insulinase (Peptidase family M16) MID01_20360 PF18801 response regulator aspartate phosphatase H, N terminal MID01_20365 PF11131 Rap-phr extracellular signalling MID01_20390 PF00005 ABC transporter MID01_20400 PF00491 Arginase family MID01_20405 PF17284 Spermidine synthase tetramerisation domain MID01_20410 PF00912 Transglycosylase MID01_20410 PF00905 Penicillin binding protein transpeptidase domain MID01_20420 PF08741 YwhD family MID01_20425 PF02163 Peptidase family M50 MID01_20430 PF01361 Tautomerase enzyme MID01_20435 PF01047 MarR family MID01_20440 PF02824 TGS domain MID01_20440 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MID01_20440 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MID01_20440 PF03129 Anticodon binding domain MID01_20445 PF07690 Major Facilitator Superfamily MID01_20450 PF02082 Transcriptional regulator MID01_20460 PF01966 HD domain MID01_20465 PF07293 Protein of unknown function (DUF1450) MID01_20475 PF00892 EamA-like transporter family MID01_20480 PF03099 Biotin/lipoate A/B protein ligase family MID01_20485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID01_20485 PF03466 LysR substrate binding domain MID01_20490 PF01515 Phosphate acetyl/butaryl transferase MID01_20495 PF06778 Chlorite dismutase MID01_20505 PF00155 Aminotransferase class I and II MID01_20510 PF07690 Major Facilitator Superfamily MID01_20525 PF07883 Cupin domain MID01_20535 PF07690 Major Facilitator Superfamily MID01_20540 PF00324 Amino acid permease MID01_20545 PF01546 Peptidase family M20/M25/M40 MID01_20550 PF00171 Aldehyde dehydrogenase family MID01_20555 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain MID01_20555 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MID01_20560 PF17735 Biofilm surface layer A MID01_20565 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase MID01_20570 PF04321 RmlD substrate binding domain MID01_20575 PF16363 GDP-mannose 4,6 dehydratase MID01_20580 PF00483 Nucleotidyl transferase MID01_20585 PF04101 Glycosyltransferase family 28 C-terminal domain MID01_20590 PF02348 Cytidylyltransferase MID01_20595 PF08666 SAF domain MID01_20595 PF03102 NeuB family MID01_20600 PF00583 Acetyltransferase (GNAT) family MID01_20605 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family MID01_20610 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase MID01_20615 PF00535 Glycosyl transferase family 2 MID01_20620 PF09671 Spore coat protein (Spore_GerQ) MID01_20625 PF04241 Protein of unknown function (DUF423) MID01_20630 PF00860 Permease family MID01_20635 PF17261 Family of unknown function (DUF5327) MID01_20640 PF00171 Aldehyde dehydrogenase family MID01_20645 PF03167 Uracil DNA glycosylase superfamily MID01_20650 PF00535 Glycosyl transferase family 2 MID01_20665 PF03551 Transcriptional regulator PadR-like family MID01_20670 PF08543 Phosphomethylpyrimidine kinase MID01_20680 PF08244 Glycosyl hydrolases family 32 C terminal MID01_20680 PF00251 Glycosyl hydrolases family 32 N-terminal domain MID01_20685 PF00367 phosphotransferase system, EIIB MID01_20685 PF02378 Phosphotransferase system, EIIC MID01_20690 PF01226 Formate/nitrite transporter MID01_20695 PF00874 PRD domain MID01_20695 PF03123 CAT RNA binding domain MID01_20705 PF13860 FlgD Ig-like domain MID01_20705 PF02225 PA domain MID01_20705 PF00082 Subtilase family MID01_20705 PF05922 Peptidase inhibitor I9 MID01_20710 PF00296 Luciferase-like monooxygenase MID01_20715 PF00881 Nitroreductase family MID01_20720 PF01098 Cell cycle protein MID01_20725 PF17368 Spore morphogenesis and germination YwcE MID01_20730 PF03626 Prokaryotic Cytochrome C oxidase subunit IV MID01_20735 PF00510 Cytochrome c oxidase subunit III MID01_20740 PF00115 Cytochrome C and Quinol oxidase polypeptide I MID01_20745 PF02790 Cytochrome C oxidase subunit II, transmembrane domain MID01_20745 PF00116 Cytochrome C oxidase subunit II, periplasmic domain MID01_20750 PF04226 Transglycosylase associated protein MID01_20755 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain MID01_20755 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain MID01_20760 PF10509 Galactokinase galactose-binding signature MID01_20760 PF08544 GHMP kinases C terminal MID01_20760 PF00288 GHMP kinases N terminal domain MID01_20765 PF04138 GtrA-like protein MID01_20770 PF00440 Bacterial regulatory proteins, tetR family MID01_20775 PF08671 Anti-repressor SinI MID01_20780 PF04341 Protein of unknown function, DUF485 MID01_20785 PF00474 Sodium:solute symporter family MID01_20790 PF01323 DSBA-like thioredoxin domain MID01_20795 PF04261 Dyp-type peroxidase family MID01_20795 PF10518 TAT (twin-arginine translocation) pathway signal sequence MID01_20800 PF09375 Imelysin MID01_20805 PF03239 Iron permease FTR1 family MID01_20810 PF02581 Thiamine monophosphate synthase MID01_20815 PF02110 Hydroxyethylthiazole kinase family MID01_20820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID01_20820 PF03466 LysR substrate binding domain MID01_20825 PF03788 LrgA family MID01_20830 PF04172 LrgB-like family MID01_20835 PF12832 MFS_1 like family MID01_20840 PF09962 Uncharacterized conserved protein (DUF2196) MID01_20845 PF10672 S-adenosylmethionine-dependent methyltransferase MID01_20845 PF17785 PUA-like domain MID01_20850 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MID01_20875 PF00082 Subtilase family MID01_20880 PF00367 phosphotransferase system, EIIB MID01_20880 PF02378 Phosphotransferase system, EIIC MID01_20885 PF03123 CAT RNA binding domain MID01_20885 PF00874 PRD domain MID01_20890 PF01501 Glycosyl transferase family 8 MID01_20895 PF09529 Integral membrane protein (intg_mem_TP0381) MID01_20900 PF01047 MarR family MID01_20905 PF00579 tRNA synthetases class I (W and Y) MID01_20905 PF01479 S4 domain MID01_20910 PF04389 Peptidase family M28 MID01_20910 PF02225 PA domain MID01_20925 PF07690 Major Facilitator Superfamily MID01_20930 PF04607 Region found in RelA / SpoT proteins MID01_20935 PF01040 UbiA prenyltransferase family MID01_20945 PF12459 D-Ala-teichoic acid biosynthesis protein MID01_20950 PF00501 AMP-binding enzyme MID01_20950 PF13193 AMP-binding enzyme C-terminal domain MID01_20955 PF03062 MBOAT, membrane-bound O-acyltransferase family MID01_20960 PF00550 Phosphopantetheine attachment site MID01_20965 PF04914 DltD protein MID01_20970 PF00106 short chain dehydrogenase MID01_20975 PF01063 Amino-transferase class IV MID01_20980 PF02056 Family 4 glycosyl hydrolase MID01_20980 PF11975 Family 4 glycosyl hydrolase C-terminal domain MID01_20985 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit MID01_20990 PF02378 Phosphotransferase system, EIIC MID01_20995 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit MID01_21000 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 MID01_21000 PF08279 HTH domain MID01_21000 PF05043 Mga helix-turn-helix domain MID01_21000 PF00874 PRD domain MID01_21010 PF02245 Methylpurine-DNA glycosylase (MPG) MID01_21015 PF00199 Catalase MID01_21015 PF06628 Catalase-related immune-responsive MID01_21020 PF07690 Major Facilitator Superfamily MID01_21025 PF12679 ABC-2 family transporter protein MID01_21030 PF00005 ABC transporter MID01_21030 PF13732 Domain of unknown function (DUF4162) MID01_21035 PF13396 Phospholipase_D-nuclease N-terminal MID01_21045 PF17280 Family of unknown function (DUF5345) MID01_21050 PF08281 Sigma-70, region 4 MID01_21050 PF04542 Sigma-70 region 2 MID01_21055 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin MID01_21060 PF01256 Carbohydrate kinase MID01_21065 PF00005 ABC transporter MID01_21065 PF00664 ABC transporter transmembrane region MID01_21070 PF00005 ABC transporter MID01_21070 PF00664 ABC transporter transmembrane region MID01_21075 PF02322 Cytochrome bd terminal oxidase subunit II MID01_21080 PF01654 Cytochrome bd terminal oxidase subunit I MID01_21085 PF03390 2-hydroxycarboxylate transporter family MID01_21090 PF01435 Peptidase family M48 MID01_21100 PF01522 Polysaccharide deacetylase MID01_21105 PF02368 Bacterial Ig-like domain (group 2) MID01_21115 PF00005 ABC transporter MID01_21115 PF17912 MalK OB fold domain MID01_21115 PF03459 TOBE domain MID01_21120 PF13556 PucR C-terminal helix-turn-helix domain MID01_21125 PF00171 Aldehyde dehydrogenase family MID01_21130 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) MID01_21130 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 MID01_21135 PF11611 Domain of unknown function (DUF4352) MID01_21140 PF16363 GDP-mannose 4,6 dehydratase MID01_21145 PF01161 Phosphatidylethanolamine-binding protein MID01_21150 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MID01_21150 PF03466 LysR substrate binding domain MID01_21160 PF07730 Histidine kinase MID01_21165 PF00072 Response regulator receiver domain MID01_21165 PF00196 Bacterial regulatory proteins, luxR family MID01_21170 PF07687 Peptidase dimerisation domain MID01_21170 PF01546 Peptidase family M20/M25/M40 MID01_21180 PF04525 LURP-one-related MID01_21185 PF01717 Cobalamin-independent synthase, Catalytic domain MID01_21190 PF01717 Cobalamin-independent synthase, Catalytic domain MID01_21200 PF01144 Coenzyme A transferase MID01_21205 PF01144 Coenzyme A transferase MID01_21215 PF08241 Methyltransferase domain MID01_21220 PF07662 Na+ dependent nucleoside transporter C-terminus MID01_21220 PF01773 Na+ dependent nucleoside transporter N-terminus MID01_21235 PF00199 Catalase MID01_21235 PF06628 Catalase-related immune-responsive MID01_21235 PF18011 C-terminal domain found in long catalases MID01_21240 PF03600 Citrate transporter MID01_21245 PF00722 Glycosyl hydrolases family 16 MID01_21250 PF03123 CAT RNA binding domain MID01_21250 PF00874 PRD domain MID01_21260 PF11700 Vacuole effluxer Atg22 like MID01_21265 PF00271 Helicase conserved C-terminal domain MID01_21265 PF00270 DEAD/DEAH box helicase MID01_21265 PF03880 DbpA RNA binding domain MID01_21270 PF13472 GDSL-like Lipase/Acylhydrolase family MID01_21285 PF14176 YxiJ-like protein MID01_21290 PF10898 Protein of unknown function (DUF2716) MID01_21315 PF05593 RHS Repeat MID01_21320 PF00892 EamA-like transporter family MID01_21325 PF00582 Universal stress protein family MID01_21330 PF00232 Glycosyl hydrolase family 1 MID01_21335 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 MID01_21335 PF00367 phosphotransferase system, EIIB MID01_21335 PF02378 Phosphotransferase system, EIIC MID01_21375 PF16888 Domain of unknown function (DUF5082) MID01_21380 PF16369 C-terminal lipocalin-like domain MID01_21380 PF04616 Glycosyl hydrolases family 43 MID01_21390 PF09021 HutP MID01_21395 PF00221 Aromatic amino acid lyase MID01_21400 PF17391 Urocanase N-terminal domain MID01_21400 PF17392 Urocanase C-terminal domain MID01_21400 PF01175 Urocanase Rossmann-like domain MID01_21405 PF01979 Amidohydrolase family MID01_21410 PF00491 Arginase family MID01_21415 PF00324 Amino acid permease MID01_21420 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain MID01_21420 PF02885 Glycosyl transferase family, helical bundle domain MID01_21420 PF00591 Glycosyl transferase family, a/b domain MID01_21425 PF07662 Na+ dependent nucleoside transporter C-terminus MID01_21425 PF01773 Na+ dependent nucleoside transporter N-terminus MID01_21430 PF01791 DeoC/LacD family aldolase MID01_21435 PF04198 Putative sugar-binding domain MID01_21440 PF06724 Domain of Unknown Function (DUF1206) MID01_21445 PF04346 Ethanolamine utilisation protein, EutH MID01_21450 PF03972 MmgE/PrpD family MID01_21455 PF07687 Peptidase dimerisation domain MID01_21455 PF01546 Peptidase family M20/M25/M40 MID01_21460 PF00005 ABC transporter MID01_21465 PF00528 Binding-protein-dependent transport system inner membrane component MID01_21470 PF00497 Bacterial extracellular solute-binding proteins, family 3 MID01_21475 PF00583 Acetyltransferase (GNAT) family MID01_21480 PF00296 Luciferase-like monooxygenase MID01_21485 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family MID01_21500 PF11631 Protein of unknown function (DUF3255) MID01_21520 PF01497 Periplasmic binding protein MID01_21525 PF06486 Protein of unknown function (DUF1093) MID01_21530 PF02687 FtsX-like permease family MID01_21535 PF00005 ABC transporter MID01_21540 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID01_21545 PF00486 Transcriptional regulatory protein, C terminal MID01_21545 PF00072 Response regulator receiver domain MID01_21550 PF01116 Fructose-bisphosphate aldolase class-II MID01_21555 PF01261 Xylose isomerase-like TIM barrel MID01_21560 PF01261 Xylose isomerase-like TIM barrel MID01_21565 PF02894 Oxidoreductase family, C-terminal alpha/beta domain MID01_21565 PF01408 Oxidoreductase family, NAD-binding Rossmann fold MID01_21570 PF07690 Major Facilitator Superfamily MID01_21575 PF01261 Xylose isomerase-like TIM barrel MID01_21580 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MID01_21580 PF00205 Thiamine pyrophosphate enzyme, central domain MID01_21580 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MID01_21585 PF00294 pfkB family carbohydrate kinase MID01_21590 PF04962 KduI/IolB family MID01_21595 PF00171 Aldehyde dehydrogenase family MID01_21600 PF00455 DeoR C terminal sensor domain MID01_21600 PF08220 DeoR-like helix-turn-helix domain MID01_21605 PF00248 Aldo/keto reductase family MID01_21615 PF10850 Protein of unknown function (DUF2653) MID01_21620 PF00083 Sugar (and other) transporter MID01_21625 PF00183 Hsp90 protein MID01_21650 PF03412 Peptidase C39 family MID01_21650 PF00664 ABC transporter transmembrane region MID01_21650 PF00005 ABC transporter MID01_21660 PF00440 Bacterial regulatory proteins, tetR family MID01_21665 PF00171 Aldehyde dehydrogenase family MID01_21670 PF06271 RDD family MID01_21675 PF01011 PQQ enzyme repeat MID01_21675 PF13360 PQQ-like domain MID01_21675 PF13570 PQQ-like domain MID01_21680 PF17369 Family of unknown function (DUF5391) MID01_21685 PF06271 RDD family MID01_21690 PF04235 Protein of unknown function (DUF418) MID01_21695 PF07883 Cupin domain MID01_21700 PF00440 Bacterial regulatory proteins, tetR family MID01_21705 PF00106 short chain dehydrogenase MID01_21710 PF01047 MarR family MID01_21715 PF03788 LrgA family MID01_21720 PF04172 LrgB-like family MID01_21725 PF04230 Polysaccharide pyruvyl transferase MID01_21730 PF02595 Glycerate kinase family MID01_21735 PF07729 FCD domain MID01_21735 PF00392 Bacterial regulatory proteins, gntR family MID01_21740 PF02782 FGGY family of carbohydrate kinases, C-terminal domain MID01_21740 PF00370 FGGY family of carbohydrate kinases, N-terminal domain MID01_21745 PF02447 GntP family permease MID01_21750 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MID01_21750 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain MID01_21755 PF00578 AhpC/TSA family MID01_21760 PF13192 Thioredoxin domain MID01_21760 PF07992 Pyridine nucleotide-disulphide oxidoreductase MID01_21780 PF00367 phosphotransferase system, EIIB MID01_21780 PF02378 Phosphotransferase system, EIIC MID01_21785 PF00392 Bacterial regulatory proteins, gntR family MID01_21785 PF07702 UTRA domain MID01_21800 PF00005 ABC transporter MID01_21810 PF04055 Radical SAM superfamily MID01_21820 PF06874 Firmicute fructose-1,6-bisphosphatase MID01_21830 PF02590 Predicted SPOUT methyltransferase MID01_21835 PF14116 YyzF-like protein MID01_21845 PF08240 Alcohol dehydrogenase GroES-like domain MID01_21845 PF00107 Zinc-binding dehydrogenase MID01_21855 PF10852 Protein of unknown function (DUF2651) MID01_21870 PF00583 Acetyltransferase (GNAT) family MID01_21875 PF18801 response regulator aspartate phosphatase H, N terminal MID01_21885 PF00491 Arginase family MID01_21890 PF00324 Amino acid permease MID01_21895 PF00202 Aminotransferase class-III MID01_21900 PF00158 Sigma-54 interaction domain MID01_21900 PF02954 Bacterial regulatory protein, Fis family MID01_21900 PF13426 PAS domain MID01_21915 PF13180 PDZ domain MID01_21920 PF00753 Metallo-beta-lactamase superfamily MID01_21925 PF09648 YycH protein MID01_21930 PF07435 YycH protein MID01_21935 PF00512 His Kinase A (phospho-acceptor) domain MID01_21935 PF00672 HAMP domain MID01_21935 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MID01_21935 PF13426 PAS domain MID01_21940 PF00072 Response regulator receiver domain MID01_21940 PF00486 Transcriptional regulatory protein, C terminal MID01_21965 PF00709 Adenylosuccinate synthetase MID01_21970 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MID01_21975 PF03796 DnaB-like helicase C terminal domain MID01_21975 PF00772 DnaB-like helicase N terminal domain MID01_21980 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) MID01_21990 PF14174 YycC-like protein MID01_21995 PF07690 Major Facilitator Superfamily MID01_22000 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase MID01_22005 PF01281 Ribosomal protein L9, N-terminal domain MID01_22005 PF03948 Ribosomal protein L9, C-terminal domain MID01_22010 PF01368 DHH family MID01_22010 PF02272 DHHA1 domain MID01_22015 PF09991 Predicted membrane protein (DUF2232) MID01_22025 PF07875 Coat F domain MID01_22030 PF01638 HxlR-like helix-turn-helix MID01_22035 PF01368 DHH family MID01_22035 PF02833 DHHA2 domain MID01_22050 PF07690 Major Facilitator Superfamily MID01_22055 PF13411 MerR HTH family regulatory protein MID01_22055 PF06445 GyrI-like small molecule binding domain MID01_22075 PF00753 Metallo-beta-lactamase superfamily MID01_22080 PF01047 MarR family MID01_22085 PF13673 Acetyltransferase (GNAT) domain MID01_22095 PF00583 Acetyltransferase (GNAT) family MID01_22100 PF04237 YjbR MID01_22105 PF01872 RibD C-terminal domain MID01_22125 PF13411 MerR HTH family regulatory protein MID01_22130 PF00892 EamA-like transporter family MID01_22135 PF03190 Protein of unknown function, DUF255 MID01_22140 PF02517 CPBP intramembrane metalloprotease MID01_22150 PF14602 Hexapeptide repeat of succinyl-transferase MID01_22150 PF12464 Maltose acetyltransferase MID01_22155 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MID01_22160 PF00356 Bacterial regulatory proteins, lacI family MID01_22160 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family MID01_22165 PF03372 Endonuclease/Exonuclease/phosphatase family MID01_22170 PF01084 Ribosomal protein S18 MID01_22175 PF00436 Single-strand binding protein family MID01_22180 PF01250 Ribosomal protein S6 MID01_22185 PF06071 Protein of unknown function (DUF933) MID01_22185 PF01926 50S ribosome-binding GTPase MID01_22190 PF04879 Molybdopterin oxidoreductase Fe4S4 domain MID01_22190 PF00384 Molybdopterin oxidoreductase MID01_22190 PF01568 Molydopterin dinucleotide binding domain MID01_22195 PF06107 Bacterial protein of unknown function (DUF951) MID01_22205 PF06866 Protein of unknown function (DUF1256) MID01_22210 PF17762 HTH domain found in ParB protein MID01_22210 PF02195 ParB-like nuclease domain MID01_22215 PF13614 AAA domain MID01_22220 PF06713 Bacterial PH domain MID01_22225 PF02195 ParB-like nuclease domain MID01_22225 PF17762 HTH domain found in ParB protein MID01_22230 PF02527 rRNA small subunit methyltransferase G MID01_22235 PF01134 Glucose inhibited division protein A MID01_22235 PF13932 GidA associated domain MID01_22240 PF01926 50S ribosome-binding GTPase MID01_22240 PF12631 MnmE helical domain MID01_22240 PF10396 GTP-binding protein TrmE N-terminus MID01_22245 PF14804 Jag N-terminus MID01_22245 PF01424 R3H domain MID01_22250 PF02096 60Kd inner membrane protein MID01_22255 PF00825 Ribonuclease P MID01_22260 PF00468 Ribosomal protein L34