CD007_00005 SM00382 ATPases associated with a variety of cellular activities CD007_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain CD007_00010 SM00480 DNA polymerase III beta subunit CD007_00030 SM00387 Histidine kinase-like ATPases CD007_00030 SM00433 TopoisomeraseII CD007_00035 SM00434 DNA Topoisomerase IV CD007_00070 SM00116 Domain in cystathionine beta-synthase and other proteins. CD007_00070 SM01240 CD007_00070 CD007_00075 SM00936 Penicillin-binding protein 5, C-terminal domain CD007_00110 SM00257 Lysin motif CD007_00110 SM00636 CD007_00110 CD007_00130 SM00382 ATPases associated with a variety of cellular activities CD007_00140 SM00493 CD007_00140 CD007_00235 SM00465 GIY-YIG type nucleases (URI domain) CD007_00245 SM00966 SpoVT / AbrB like domain CD007_00260 SM01208 CD007_00260 CD007_00265 SM00493 CD007_00265 CD007_00270 SM00650 Ribosomal RNA adenine dimethylases CD007_00315 SM01400 CD007_00315 CD007_00335 SM00487 DEAD-like helicases superfamily CD007_00335 SM00490 helicase superfamily c-terminal domain CD007_00335 SM00982 CD007_00335 CD007_00335 SM01058 CarD-like/TRCF domain CD007_00340 SM00966 SpoVT / AbrB like domain CD007_00355 SM00363 S4 RNA-binding domain CD007_00375 SM00316 Ribosomal protein S1-like RNA-binding domain CD007_00390 SM00331 Sigma factor PP2C-like phosphatases CD007_00390 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CD007_00400 SM00220 Serine/Threonine protein kinases, catalytic domain CD007_00405 SM00977 TilS substrate C-terminal domain CD007_00415 SM00382 ATPases associated with a variety of cellular activities CD007_00460 SM00905 Dihydroneopterin aldolase CD007_00470 SM00530 Helix-turn-helix XRE-family like proteins CD007_00560 SM00382 ATPases associated with a variety of cellular activities CD007_00560 SM01086 C-terminal, D2-small domain, of ClpB protein CD007_00565 SM00382 ATPases associated with a variety of cellular activities CD007_00575 SM00670 Large family of predicted nucleotide-binding domains CD007_00605 SM00840 CD007_00605 CD007_00610 SM00535 Ribonuclease III family CD007_00615 SM00967 RNA 2'-O ribose methyltransferase substrate binding CD007_00640 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CD007_00640 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CD007_00645 SM00649 Ribosomal protein L11/L12 CD007_00675 SM00663 RNA polymerase I subunit A N-terminus CD007_00695 SM00838 Elongation factor G C-terminus CD007_00695 SM00889 Elongation factor G, domain IV CD007_00710 SM01403 CD007_00710 CD007_00730 SM01382 CD007_00730 CD007_00730 SM01383 CD007_00730 CD007_00745 SM00322 K homology RNA-binding domain CD007_00765 SM01374 CD007_00765 CD007_00770 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CD007_00835 SM00316 Ribosomal protein S1-like RNA-binding domain CD007_00855 SM00662 RNA polymerases D CD007_00865 SM00382 ATPases associated with a variety of cellular activities CD007_00870 SM00382 ATPases associated with a variety of cellular activities CD007_00905 SM00646 CD007_00905 CD007_00920 SM01251 CD007_00920 CD007_01065 SM00342 helix_turn_helix, arabinose operon control protein CD007_01165 SM00478 endonuclease III CD007_01170 SM00342 helix_turn_helix, arabinose operon control protein CD007_01205 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CD007_01295 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_01320 SM00342 helix_turn_helix, arabinose operon control protein CD007_01380 SM00450 Rhodanese Homology Domain CD007_01400 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_01400 SM00866 CD007_01400 CD007_01440 SM00387 Histidine kinase-like ATPases CD007_01445 SM00448 cheY-homologous receiver domain CD007_01450 SM01130 CD007_01450 CD007_01465 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CD007_01470 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_01470 SM00895 CD007_01470 CD007_01475 SM00858 CD007_01475 CD007_01495 SM00448 cheY-homologous receiver domain CD007_01495 SM00862 Transcriptional regulatory protein, C terminal CD007_01500 SM00387 Histidine kinase-like ATPases CD007_01500 SM00388 His Kinase A (phosphoacceptor) domain CD007_01505 SM00382 ATPases associated with a variety of cellular activities CD007_01525 SM00327 von Willebrand factor (vWF) type A domain CD007_01570 SM00870 CD007_01570 CD007_01590 SM00387 Histidine kinase-like ATPases CD007_01595 SM00448 cheY-homologous receiver domain CD007_01595 SM00850 LytTr DNA-binding domain CD007_01600 SM00382 ATPases associated with a variety of cellular activities CD007_01640 SM00028 Tetratricopeptide repeats CD007_01650 SM00642 Alpha-amylase domain CD007_01660 SM00382 ATPases associated with a variety of cellular activities CD007_01720 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CD007_01725 SM00116 Domain in cystathionine beta-synthase and other proteins. CD007_01725 SM00382 ATPases associated with a variety of cellular activities CD007_01755 SM00632 CD007_01755 CD007_01755 SM00642 Alpha-amylase domain CD007_01775 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_01890 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CD007_01920 SM00833 Cobalamin synthesis protein cobW C-terminal domain CD007_01930 SM00062 Bacterial periplasmic substrate-binding proteins CD007_01965 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CD007_01965 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CD007_01975 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CD007_01985 SM00823 Phosphopantetheine attachment site CD007_01985 SM01294 CD007_01985 CD007_01990 SM00823 Phosphopantetheine attachment site CD007_01990 SM01294 CD007_01990 CD007_01995 SM00823 Phosphopantetheine attachment site CD007_02020 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_02035 SM00382 ATPases associated with a variety of cellular activities CD007_02045 SM00062 Bacterial periplasmic substrate-binding proteins CD007_02085 SM00710 Parallel beta-helix repeats CD007_02085 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses CD007_02110 SM00382 ATPases associated with a variety of cellular activities CD007_02120 SM00448 cheY-homologous receiver domain CD007_02120 SM00862 Transcriptional regulatory protein, C terminal CD007_02125 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CD007_02125 SM00387 Histidine kinase-like ATPases CD007_02125 SM00388 His Kinase A (phosphoacceptor) domain CD007_02130 SM00028 Tetratricopeptide repeats CD007_02165 SM00382 ATPases associated with a variety of cellular activities CD007_02195 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CD007_02200 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_02235 SM00420 helix_turn_helix, Deoxyribose operon repressor CD007_02260 SM01329 CD007_02260 CD007_02305 SM00796 Allophanate hydrolase subunit 1 CD007_02310 SM00797 Allophanate hydrolase subunit 2 CD007_02315 SM00346 helix_turn_helix isocitrate lyase regulation CD007_02390 SM00344 helix_turn_helix ASNC type CD007_02395 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CD007_02395 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CD007_02395 SM00493 CD007_02395 CD007_02405 SM00267 diguanylate cyclase CD007_02490 SM00091 PAS domain CD007_02490 SM00387 Histidine kinase-like ATPases CD007_02495 SM00448 cheY-homologous receiver domain CD007_02510 SM00382 ATPases associated with a variety of cellular activities CD007_02565 SM00487 DEAD-like helicases superfamily CD007_02565 SM00490 helicase superfamily c-terminal domain CD007_02595 SM01005 Alanine racemase, C-terminal domain CD007_02620 SM00387 Histidine kinase-like ATPases CD007_02625 SM00331 Sigma factor PP2C-like phosphatases CD007_02645 SM00331 Sigma factor PP2C-like phosphatases CD007_02645 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CD007_02650 SM00316 Ribosomal protein S1-like RNA-binding domain CD007_02650 SM00732 Likely ribonuclease with RNase H fold. CD007_02660 SM00731 SprT homologues. CD007_02710 SM00487 DEAD-like helicases superfamily CD007_02710 SM00491 CD007_02710 CD007_02735 SM00860 SMI1 / KNR4 family CD007_02755 SM00530 Helix-turn-helix XRE-family like proteins CD007_02770 SM00357 Cold shock protein domain CD007_02775 SM01058 CarD-like/TRCF domain CD007_02790 SM00342 helix_turn_helix, arabinose operon control protein CD007_02800 SM00342 helix_turn_helix, arabinose operon control protein CD007_02800 SM00871 Bacterial transcription activator, effector binding domain CD007_02805 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_02850 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_02895 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CD007_02920 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_02930 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CD007_02950 SM00387 Histidine kinase-like ATPases CD007_02955 SM00421 helix_turn_helix, Lux Regulon CD007_02955 SM00448 cheY-homologous receiver domain CD007_02975 SM00422 helix_turn_helix, mercury resistance CD007_02975 SM00871 Bacterial transcription activator, effector binding domain CD007_03060 SM00382 ATPases associated with a variety of cellular activities CD007_03075 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_03090 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_03090 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CD007_03105 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_03105 SM00895 CD007_03105 CD007_03110 SM00257 Lysin motif CD007_03110 SM00636 CD007_03110 CD007_03125 SM00098 Alkaline phosphatase homologues CD007_03145 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CD007_03180 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_03180 SM00866 CD007_03180 CD007_03265 SM00382 ATPases associated with a variety of cellular activities CD007_03275 SM00881 CoA binding domain CD007_03305 SM00883 Chaperonin 10 Kd subunit CD007_03330 SM00829 Enoylreductase CD007_03375 SM00829 Enoylreductase CD007_03440 SM00460 Transglutaminase/protease-like homologues CD007_03485 SM01001 AIR carboxylase CD007_03495 SM00998 Adenylosuccinate lyase C-terminus CD007_03510 SM01211 CD007_03510 CD007_03535 SM00798 AICARFT/IMPCHase bienzyme CD007_03535 SM00851 MGS-like domain CD007_03540 SM01209 CD007_03540 CD007_03540 SM01210 CD007_03540 CD007_03545 SM00344 helix_turn_helix ASNC type CD007_03590 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CD007_03590 SM00292 breast cancer carboxy-terminal domain CD007_03590 SM00532 Ligase N family CD007_03625 SM00845 GatB domain CD007_03640 SM00046 Diacylglycerol kinase catalytic domain (presumed) CD007_03670 SM00028 Tetratricopeptide repeats CD007_03735 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CD007_03735 SM00387 Histidine kinase-like ATPases CD007_03740 SM00342 helix_turn_helix, arabinose operon control protein CD007_03740 SM00448 cheY-homologous receiver domain CD007_03765 SM00342 helix_turn_helix, arabinose operon control protein CD007_03870 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_03945 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CD007_03950 SM00382 ATPases associated with a variety of cellular activities CD007_03960 SM00422 helix_turn_helix, mercury resistance CD007_03985 SM00382 ATPases associated with a variety of cellular activities CD007_03990 SM00487 DEAD-like helicases superfamily CD007_03990 SM00490 helicase superfamily c-terminal domain CD007_04000 SM00829 Enoylreductase CD007_04005 SM00382 ATPases associated with a variety of cellular activities CD007_04040 SM00656 CD007_04040 CD007_04050 SM00387 Histidine kinase-like ATPases CD007_04055 SM00448 cheY-homologous receiver domain CD007_04070 SM00849 Metallo-beta-lactamase superfamily CD007_04160 SM00642 Alpha-amylase domain CD007_04165 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_04165 SM00866 CD007_04165 CD007_04195 SM00226 Low molecular weight phosphatase family CD007_04255 SM00478 endonuclease III CD007_04285 SM00861 Transketolase, pyrimidine binding domain CD007_04300 SM00382 ATPases associated with a variety of cellular activities CD007_04360 SM00382 ATPases associated with a variety of cellular activities CD007_04365 SM00382 ATPases associated with a variety of cellular activities CD007_04380 SM00387 Histidine kinase-like ATPases CD007_04385 SM00421 helix_turn_helix, Lux Regulon CD007_04385 SM00448 cheY-homologous receiver domain CD007_04395 SM00382 ATPases associated with a variety of cellular activities CD007_04435 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_04510 SM00287 Bacterial SH3 domain homologues CD007_04540 SM00478 endonuclease III CD007_04540 SM00525 CD007_04540 CD007_04570 SM00382 ATPases associated with a variety of cellular activities CD007_04735 SM01060 CD007_04735 CD007_04740 SM00382 ATPases associated with a variety of cellular activities CD007_04745 SM00062 Bacterial periplasmic substrate-binding proteins CD007_04775 SM00530 Helix-turn-helix XRE-family like proteins CD007_04790 SM00567 E-Z type HEAT repeats CD007_04820 SM00763 PrkA AAA domain CD007_04830 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_04865 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_04870 SM00382 ATPases associated with a variety of cellular activities CD007_04875 SM00382 ATPases associated with a variety of cellular activities CD007_04885 SM00357 Cold shock protein domain CD007_04900 SM00267 diguanylate cyclase CD007_04930 SM00318 Staphylococcal nuclease homologues CD007_04940 SM00363 S4 RNA-binding domain CD007_04950 SM00116 Domain in cystathionine beta-synthase and other proteins. CD007_04995 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CD007_04995 SM00387 Histidine kinase-like ATPases CD007_05000 SM00421 helix_turn_helix, Lux Regulon CD007_05000 SM00448 cheY-homologous receiver domain CD007_05020 SM00257 Lysin motif CD007_05040 SM00098 Alkaline phosphatase homologues CD007_05045 SM00257 Lysin motif CD007_05075 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_05105 SM00563 Phosphate acyltransferases CD007_05110 SM01091 Transporter associated domain CD007_05115 SM00422 helix_turn_helix, mercury resistance CD007_05125 SM01091 Transporter associated domain CD007_05185 SM00382 ATPases associated with a variety of cellular activities CD007_05190 SM00382 ATPases associated with a variety of cellular activities CD007_05245 SM00729 Elongator protein 3, MiaB family, Radical SAM CD007_05275 SM00382 ATPases associated with a variety of cellular activities CD007_05295 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CD007_05335 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_05365 SM00382 ATPases associated with a variety of cellular activities CD007_05450 SM01022 CD007_05450 CD007_05465 SM00849 Metallo-beta-lactamase superfamily CD007_05505 SM00829 Enoylreductase CD007_05515 SM00855 Phosphoglycerate mutase family CD007_05535 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CD007_05550 SM00914 CD007_05550 CD007_05565 SM00894 Excalibur calcium-binding domain CD007_05600 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_05635 SM00354 helix_turn _helix lactose operon repressor CD007_05770 SM00342 helix_turn_helix, arabinose operon control protein CD007_05775 SM00354 helix_turn _helix lactose operon repressor CD007_05795 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_05840 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CD007_05870 SM00316 Ribosomal protein S1-like RNA-binding domain CD007_05880 SM00752 Horizontally Transferred TransMembrane Domain CD007_05960 SM00859 Semialdehyde dehydrogenase, NAD binding domain CD007_05980 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CD007_05985 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CD007_06035 SM00825 Beta-ketoacyl synthase CD007_06045 SM00382 ATPases associated with a variety of cellular activities CD007_06050 SM00382 ATPases associated with a variety of cellular activities CD007_06095 SM00382 ATPases associated with a variety of cellular activities CD007_06100 SM00382 ATPases associated with a variety of cellular activities CD007_06165 SM01118 CD007_06165 CD007_06175 SM00954 Region found in RelA / SpoT proteins CD007_06400 SM00635 Bacterial Ig-like domain 2 CD007_06495 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CD007_06495 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CD007_06555 SM00382 ATPases associated with a variety of cellular activities CD007_06565 SM00835 Cupin CD007_06595 SM00829 Enoylreductase CD007_06615 SM00354 helix_turn _helix lactose operon repressor CD007_06625 SM00858 CD007_06625 CD007_06640 SM00382 ATPases associated with a variety of cellular activities CD007_06645 SM00028 Tetratricopeptide repeats CD007_06660 SM00257 Lysin motif CD007_06660 SM00644 CD007_06660 CD007_06685 SM00530 Helix-turn-helix XRE-family like proteins CD007_06700 SM00382 ATPases associated with a variety of cellular activities CD007_06800 SM00257 Lysin motif CD007_06865 SM00257 Lysin motif CD007_06865 SM00644 CD007_06865 CD007_06910 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CD007_06935 SM00382 ATPases associated with a variety of cellular activities CD007_06950 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CD007_06960 SM00382 ATPases associated with a variety of cellular activities CD007_07020 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CD007_07035 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_07075 SM00382 ATPases associated with a variety of cellular activities CD007_07090 SM00448 cheY-homologous receiver domain CD007_07090 SM00862 Transcriptional regulatory protein, C terminal CD007_07095 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CD007_07095 SM00387 Histidine kinase-like ATPases CD007_07095 SM00388 His Kinase A (phosphoacceptor) domain CD007_07120 SM00116 Domain in cystathionine beta-synthase and other proteins. CD007_07120 SM00924 MgtE intracellular N domain CD007_07125 SM00422 helix_turn_helix, mercury resistance CD007_07140 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_07175 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen CD007_07180 SM00052 Putative diguanylate phosphodiesterase CD007_07180 SM00267 diguanylate cyclase CD007_07240 SM00091 PAS domain CD007_07240 SM00387 Histidine kinase-like ATPases CD007_07240 SM00388 His Kinase A (phosphoacceptor) domain CD007_07280 SM01007 Class II Aldolase and Adducin N-terminal domain CD007_07305 SM00387 Histidine kinase-like ATPases CD007_07305 SM00388 His Kinase A (phosphoacceptor) domain CD007_07310 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_07330 SM00382 ATPases associated with a variety of cellular activities CD007_07330 SM01086 C-terminal, D2-small domain, of ClpB protein CD007_07365 SM00822 CD007_07365 CD007_07370 SM00257 Lysin motif CD007_07375 SM00257 Lysin motif CD007_07380 SM00636 CD007_07380 CD007_07435 SM00354 helix_turn _helix lactose operon repressor CD007_07440 SM01061 CAT RNA binding domain CD007_07475 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CD007_07475 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CD007_07495 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CD007_07495 SM00091 PAS domain CD007_07495 SM00387 Histidine kinase-like ATPases CD007_07495 SM00388 His Kinase A (phosphoacceptor) domain CD007_07510 SM00260 Two component signalling adaptor domain CD007_07510 SM00448 cheY-homologous receiver domain CD007_07525 SM00257 Lysin motif CD007_07540 SM00052 Putative diguanylate phosphodiesterase CD007_07635 SM00852 Probable molybdopterin binding domain CD007_07655 SM00382 ATPases associated with a variety of cellular activities CD007_07660 SM00382 ATPases associated with a variety of cellular activities CD007_07675 SM00382 ATPases associated with a variety of cellular activities CD007_07680 SM01066 Carbohydrate binding domain CD007_07685 SM00420 helix_turn_helix, Deoxyribose operon repressor CD007_07685 SM01134 CD007_07685 CD007_07710 SM00382 ATPases associated with a variety of cellular activities CD007_07735 SM00966 SpoVT / AbrB like domain CD007_07740 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CD007_07740 SM00091 PAS domain CD007_07740 SM00387 Histidine kinase-like ATPases CD007_07740 SM00388 His Kinase A (phosphoacceptor) domain CD007_07760 SM00849 Metallo-beta-lactamase superfamily CD007_07795 SM00861 Transketolase, pyrimidine binding domain CD007_07895 SM00838 Elongation factor G C-terminus CD007_07915 SM00670 Large family of predicted nucleotide-binding domains CD007_07940 SM00878 Biotin carboxylase C-terminal domain CD007_07985 SM00116 Domain in cystathionine beta-synthase and other proteins. CD007_08035 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CD007_08095 SM00740 CD007_08095 CD007_08100 SM00740 CD007_08100 CD007_08155 SM00842 Cell division protein FtsA CD007_08160 SM00864 Tubulin/FtsZ family, GTPase domain CD007_08160 SM00865 Tubulin/FtsZ family, C-terminal domain CD007_08185 SM00382 ATPases associated with a variety of cellular activities CD007_08220 SM00363 S4 RNA-binding domain CD007_08245 SM00363 S4 RNA-binding domain CD007_08270 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CD007_08275 SM00851 MGS-like domain CD007_08275 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CD007_08275 SM01209 CD007_08275 CD007_08290 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CD007_08340 SM00831 Cation transporter/ATPase, N-terminus CD007_08355 SM00072 Guanylate kinase homologues. CD007_08360 SM01409 CD007_08360 CD007_08370 SM00487 DEAD-like helicases superfamily CD007_08370 SM00490 helicase superfamily c-terminal domain CD007_08395 SM00331 Sigma factor PP2C-like phosphatases CD007_08395 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CD007_08400 SM00220 Serine/Threonine protein kinases, catalytic domain CD007_08400 SM00740 CD007_08400 CD007_08415 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain CD007_08435 SM01120 CD007_08435 CD007_08435 SM01121 CD007_08435 CD007_08450 SM00487 DEAD-like helicases superfamily CD007_08450 SM00490 helicase superfamily c-terminal domain CD007_08465 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CD007_08470 SM00822 CD007_08470 CD007_08480 SM00358 Double-stranded RNA binding motif CD007_08480 SM00535 Ribonuclease III family CD007_08485 SM00968 SMC proteins Flexible Hinge Domain CD007_08490 SM00382 ATPases associated with a variety of cellular activities CD007_08490 SM00962 SRP54-type protein, GTPase domain CD007_08490 SM00963 SRP54-type protein, helical bundle domain CD007_08505 SM00382 ATPases associated with a variety of cellular activities CD007_08505 SM00962 SRP54-type protein, GTPase domain CD007_08505 SM00963 SRP54-type protein, helical bundle domain CD007_08565 SM00881 CoA binding domain CD007_08575 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CD007_08575 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CD007_08575 SM00493 CD007_08575 CD007_08595 SM00382 ATPases associated with a variety of cellular activities CD007_08595 SM01086 C-terminal, D2-small domain, of ClpB protein CD007_08635 SM00382 ATPases associated with a variety of cellular activities CD007_08685 SM00448 cheY-homologous receiver domain CD007_08720 SM00962 SRP54-type protein, GTPase domain CD007_08730 SM00448 cheY-homologous receiver domain CD007_08735 SM00073 Histidine Phosphotransfer domain CD007_08735 SM00260 Two component signalling adaptor domain CD007_08735 SM00387 Histidine kinase-like ATPases CD007_08735 SM01231 CD007_08735 CD007_08740 SM00260 Two component signalling adaptor domain CD007_08810 SM00479 CD007_08810 CD007_08810 SM00481 DNA polymerase alpha chain like domain CD007_08825 SM00382 ATPases associated with a variety of cellular activities CD007_08830 SM01260 CD007_08830 CD007_08840 SM00316 Ribosomal protein S1-like RNA-binding domain CD007_08840 SM00322 K homology RNA-binding domain CD007_08875 SM00904 Riboflavin kinase CD007_08880 SM01387 CD007_08880 CD007_08885 SM00316 Ribosomal protein S1-like RNA-binding domain CD007_08885 SM00322 K homology RNA-binding domain CD007_08915 SM00859 Semialdehyde dehydrogenase, NAD binding domain CD007_08925 SM01130 CD007_08925 CD007_08930 SM00849 Metallo-beta-lactamase superfamily CD007_08945 SM00382 ATPases associated with a variety of cellular activities CD007_08945 SM00843 CD007_08945 CD007_08950 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_08950 SM00866 CD007_08950 CD007_08985 SM00530 Helix-turn-helix XRE-family like proteins CD007_08995 SM00852 Probable molybdopterin binding domain CD007_09000 SM00382 ATPases associated with a variety of cellular activities CD007_09010 SM00322 K homology RNA-binding domain CD007_09010 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CD007_09025 SM00829 Enoylreductase CD007_09035 SM00729 Elongator protein 3, MiaB family, Radical SAM CD007_09050 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CD007_09050 SM00534 ATPase domain of DNA mismatch repair MUTS family CD007_09055 SM00853 MutL C terminal dimerisation domain CD007_09055 SM01340 CD007_09055 CD007_09075 SM00849 Metallo-beta-lactamase superfamily CD007_09085 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CD007_09090 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CD007_09095 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CD007_09105 SM00825 Beta-ketoacyl synthase CD007_09125 SM00822 CD007_09125 CD007_09125 SM00823 Phosphopantetheine attachment site CD007_09125 SM00825 Beta-ketoacyl synthase CD007_09125 SM00826 CD007_09125 CD007_09125 SM01294 CD007_09125 CD007_09130 SM00822 CD007_09130 CD007_09130 SM00823 Phosphopantetheine attachment site CD007_09130 SM00825 Beta-ketoacyl synthase CD007_09130 SM00826 CD007_09130 CD007_09130 SM01294 CD007_09130 CD007_09135 SM00822 CD007_09135 CD007_09135 SM00823 Phosphopantetheine attachment site CD007_09135 SM00825 Beta-ketoacyl synthase CD007_09135 SM00826 CD007_09135 CD007_09135 SM01294 CD007_09135 CD007_09140 SM00822 CD007_09140 CD007_09140 SM00823 Phosphopantetheine attachment site CD007_09140 SM00825 Beta-ketoacyl synthase CD007_09140 SM00826 CD007_09140 CD007_09140 SM01294 CD007_09140 CD007_09145 SM00823 Phosphopantetheine attachment site CD007_09145 SM00825 Beta-ketoacyl synthase CD007_09145 SM01294 CD007_09145 CD007_09160 SM00849 Metallo-beta-lactamase superfamily CD007_09245 SM00646 CD007_09245 CD007_09255 SM00382 ATPases associated with a variety of cellular activities CD007_09270 SM00422 helix_turn_helix, mercury resistance CD007_09275 SM01230 CD007_09275 CD007_09300 SM00860 SMI1 / KNR4 family CD007_09385 SM01005 Alanine racemase, C-terminal domain CD007_09515 SM00257 Lysin motif CD007_09520 SM00857 Resolvase, N terminal domain CD007_09530 SM00861 Transketolase, pyrimidine binding domain CD007_09555 SM00448 cheY-homologous receiver domain CD007_09625 SM01207 CD007_09625 CD007_09630 SM00881 CoA binding domain CD007_09635 SM00387 Histidine kinase-like ATPases CD007_09635 SM00433 TopoisomeraseII CD007_09640 SM00434 DNA Topoisomerase IV CD007_09655 SM01067 Cellulose binding domain CD007_09670 SM00606 Cellulose Binding Domain Type IV CD007_09715 SM00878 Biotin carboxylase C-terminal domain CD007_09745 SM00823 Phosphopantetheine attachment site CD007_09745 SM00824 Thioesterase CD007_09750 SM00823 Phosphopantetheine attachment site CD007_09755 SM00823 Phosphopantetheine attachment site CD007_09760 SM00823 Phosphopantetheine attachment site CD007_09765 SM00823 Phosphopantetheine attachment site CD007_09835 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CD007_09850 SM00822 CD007_09850 CD007_09880 SM00382 ATPases associated with a variety of cellular activities CD007_09885 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_09905 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CD007_09930 SM00354 helix_turn _helix lactose operon repressor CD007_09950 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CD007_09950 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CD007_09970 SM00656 CD007_09970 CD007_09985 SM00835 Cupin CD007_10160 SM00028 Tetratricopeptide repeats CD007_10180 SM00860 SMI1 / KNR4 family CD007_10195 SM00342 helix_turn_helix, arabinose operon control protein CD007_10210 SM00849 Metallo-beta-lactamase superfamily CD007_10215 SM00871 Bacterial transcription activator, effector binding domain CD007_10230 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CD007_10270 SM00421 helix_turn_helix, Lux Regulon CD007_10270 SM00448 cheY-homologous receiver domain CD007_10275 SM00257 Lysin motif CD007_10280 SM00341 Helicase and RNase D C-terminal CD007_10280 SM00487 DEAD-like helicases superfamily CD007_10280 SM00490 helicase superfamily c-terminal domain CD007_10280 SM00956 CD007_10280 CD007_10370 SM00861 Transketolase, pyrimidine binding domain CD007_10375 SM00327 von Willebrand factor (vWF) type A domain CD007_10380 SM00382 ATPases associated with a variety of cellular activities CD007_10390 SM00257 Lysin motif CD007_10485 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CD007_10485 SM00245 tail specific protease CD007_10520 SM00014 Acid phosphatase homologues CD007_10565 SM00882 Coenzyme A transferase CD007_10570 SM00882 Coenzyme A transferase CD007_10630 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_10670 SM00382 ATPases associated with a variety of cellular activities CD007_10715 SM00567 E-Z type HEAT repeats CD007_10715 SM00932 Scaffold protein Nfu/NifU N terminal CD007_10720 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CD007_10740 SM00357 Cold shock protein domain CD007_10780 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CD007_10780 SM00475 5'-3' exonuclease CD007_10840 SM00354 helix_turn _helix lactose operon repressor CD007_10855 SM00491 CD007_10855 CD007_10870 SM00981 CD007_10870 CD007_10900 SM00487 DEAD-like helicases superfamily CD007_10900 SM00490 helicase superfamily c-terminal domain CD007_10960 SM00478 endonuclease III CD007_10960 SM00525 CD007_10960 CD007_10990 SM00479 CD007_10990 CD007_10990 SM00487 DEAD-like helicases superfamily CD007_10990 SM00491 CD007_10990 CD007_11030 SM00851 MGS-like domain CD007_11080 SM00914 CD007_11080 CD007_11085 SM00028 Tetratricopeptide repeats CD007_11150 SM00138 Methyltransferase, chemotaxis proteins CD007_11155 SM00562 CD007_11155 CD007_11185 SM00411 bacterial (prokaryotic) histone like domain CD007_11235 SM01240 CD007_11235 CD007_11240 SM00316 Ribosomal protein S1-like RNA-binding domain CD007_11280 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CD007_11300 SM00257 Lysin motif CD007_11310 SM00487 DEAD-like helicases superfamily CD007_11310 SM00490 helicase superfamily c-terminal domain CD007_11350 SM00091 PAS domain CD007_11350 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CD007_11350 SM00387 Histidine kinase-like ATPases CD007_11350 SM00388 His Kinase A (phosphoacceptor) domain CD007_11355 SM00448 cheY-homologous receiver domain CD007_11355 SM00862 Transcriptional regulatory protein, C terminal CD007_11375 SM00363 S4 RNA-binding domain CD007_11390 SM00936 Penicillin-binding protein 5, C-terminal domain CD007_11525 SM00387 Histidine kinase-like ATPases CD007_11535 SM00936 Penicillin-binding protein 5, C-terminal domain CD007_11575 SM00919 Malic enzyme, NAD binding domain CD007_11575 SM01274 CD007_11575 CD007_11590 SM00870 CD007_11590 CD007_11595 SM00530 Helix-turn-helix XRE-family like proteins CD007_11700 SM00849 Metallo-beta-lactamase superfamily CD007_11730 SM00849 Metallo-beta-lactamase superfamily CD007_11740 SM01350 CD007_11740 CD007_11790 SM00382 ATPases associated with a variety of cellular activities CD007_11800 SM00062 Bacterial periplasmic substrate-binding proteins CD007_11800 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CD007_11810 SM00046 Diacylglycerol kinase catalytic domain (presumed) CD007_11820 SM00422 helix_turn_helix, mercury resistance CD007_11830 SM00861 Transketolase, pyrimidine binding domain CD007_11850 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CD007_11860 SM00091 PAS domain CD007_11860 SM00382 ATPases associated with a variety of cellular activities CD007_11905 SM00646 CD007_11905 CD007_11920 SM00448 cheY-homologous receiver domain CD007_11925 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CD007_11940 SM00363 S4 RNA-binding domain CD007_11945 SM00861 Transketolase, pyrimidine binding domain CD007_11980 SM00878 Biotin carboxylase C-terminal domain CD007_12025 SM00382 ATPases associated with a variety of cellular activities CD007_12035 SM00841 Elongation factor P, C-terminal CD007_12035 SM01185 CD007_12035 CD007_12070 SM00529 Helix-turn-helix diphteria tox regulatory element CD007_12080 SM00450 Rhodanese Homology Domain CD007_12100 SM00487 DEAD-like helicases superfamily CD007_12100 SM00490 helicase superfamily c-terminal domain CD007_12115 SM00530 Helix-turn-helix XRE-family like proteins CD007_12175 SM00382 ATPases associated with a variety of cellular activities CD007_12190 SM01091 Transporter associated domain CD007_12215 SM00849 Metallo-beta-lactamase superfamily CD007_12235 SM00631 CD007_12235 CD007_12255 SM00028 Tetratricopeptide repeats CD007_12295 SM00382 ATPases associated with a variety of cellular activities CD007_12300 SM00382 ATPases associated with a variety of cellular activities CD007_12345 SM00257 Lysin motif CD007_12380 SM00518 AP endonuclease family 2 CD007_12385 SM00487 DEAD-like helicases superfamily CD007_12385 SM00490 helicase superfamily c-terminal domain CD007_12425 SM00400 zinc finger CD007_12425 SM00493 CD007_12425 CD007_12440 SM00116 Domain in cystathionine beta-synthase and other proteins. CD007_12485 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CD007_12535 SM00729 Elongator protein 3, MiaB family, Radical SAM CD007_12550 SM00271 DnaJ molecular chaperone homology domain CD007_12570 SM00729 Elongator protein 3, MiaB family, Radical SAM CD007_12575 SM00838 Elongation factor G C-terminus CD007_12610 SM00849 Metallo-beta-lactamase superfamily CD007_12620 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CD007_12640 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CD007_12650 SM01103 CD007_12650 CD007_12680 SM00644 CD007_12680 CD007_12690 SM01350 CD007_12690 CD007_12710 SM00857 Resolvase, N terminal domain CD007_12720 SM00226 Low molecular weight phosphatase family CD007_12735 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CD007_12745 SM00028 Tetratricopeptide repeats CD007_12780 SM00644 CD007_12780 CD007_12840 SM00257 Lysin motif CD007_12975 SM00382 ATPases associated with a variety of cellular activities CD007_13005 SM00530 Helix-turn-helix XRE-family like proteins CD007_13015 SM00530 Helix-turn-helix XRE-family like proteins CD007_13020 SM00530 Helix-turn-helix XRE-family like proteins CD007_13060 SM00388 His Kinase A (phosphoacceptor) domain CD007_13065 SM00448 cheY-homologous receiver domain CD007_13065 SM00862 Transcriptional regulatory protein, C terminal CD007_13110 SM00450 Rhodanese Homology Domain CD007_13155 SM00422 helix_turn_helix, mercury resistance CD007_13170 SM01091 Transporter associated domain CD007_13230 SM00344 helix_turn_helix ASNC type CD007_13295 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_13295 SM00895 CD007_13295 CD007_13305 SM00822 CD007_13305 CD007_13310 SM00861 Transketolase, pyrimidine binding domain CD007_13325 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_13375 SM00287 Bacterial SH3 domain homologues CD007_13415 SM00422 helix_turn_helix, mercury resistance CD007_13425 SM00829 Enoylreductase CD007_13435 SM00640 Glycosyl hydrolases family 32 CD007_13460 SM00382 ATPases associated with a variety of cellular activities CD007_13530 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CD007_13530 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CD007_13560 SM00650 Ribosomal RNA adenine dimethylases CD007_13615 SM00732 Likely ribonuclease with RNase H fold. CD007_13625 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CD007_13635 SM00382 ATPases associated with a variety of cellular activities CD007_13640 SM00062 Bacterial periplasmic substrate-binding proteins CD007_13640 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CD007_13670 SM00382 ATPases associated with a variety of cellular activities CD007_13675 SM00028 Tetratricopeptide repeats CD007_13695 SM00382 ATPases associated with a variety of cellular activities CD007_13725 SM00287 Bacterial SH3 domain homologues CD007_13725 SM00646 CD007_13725 CD007_13735 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CD007_13735 SM00954 Region found in RelA / SpoT proteins CD007_13785 SM01323 CD007_13785 CD007_13805 SM00382 ATPases associated with a variety of cellular activities CD007_13810 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CD007_13860 SM00257 Lysin motif CD007_13905 SM01317 CD007_13905 CD007_14000 SM00257 Lysin motif CD007_14010 SM01004 Delta-aminolevulinic acid dehydratase CD007_14045 SM00382 ATPases associated with a variety of cellular activities CD007_14045 SM00464 Found in ATP-dependent protease La (LON) CD007_14050 SM00382 ATPases associated with a variety of cellular activities CD007_14055 SM00382 ATPases associated with a variety of cellular activities CD007_14055 SM00994 ClpX C4-type zinc finger CD007_14055 SM01086 C-terminal, D2-small domain, of ClpB protein CD007_14080 SM01329 CD007_14080 CD007_14085 SM00917 LeuA allosteric (dimerisation) domain CD007_14145 SM00909 Sporulation and spore germination CD007_14155 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_14160 SM00421 helix_turn_helix, Lux Regulon CD007_14200 SM00465 GIY-YIG type nucleases (URI domain) CD007_14215 SM00813 Alpha-L-arabinofuranosidase C-terminus CD007_14220 SM00893 Electron transfer flavoprotein domain CD007_14225 SM00893 Electron transfer flavoprotein domain CD007_14255 SM00463 Small MutS-related domain CD007_14255 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CD007_14255 SM00534 ATPase domain of DNA mismatch repair MUTS family CD007_14260 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CD007_14260 SM00481 DNA polymerase alpha chain like domain CD007_14260 SM00483 DNA polymerase X family CD007_14280 SM00873 B3/4 domain CD007_14280 SM00874 tRNA synthetase B5 domain CD007_14280 SM00896 Ferredoxin-fold anticodon binding domain CD007_14295 SM00967 RNA 2'-O ribose methyltransferase substrate binding CD007_14335 SM00813 Alpha-L-arabinofuranosidase C-terminus CD007_14365 SM01007 Class II Aldolase and Adducin N-terminal domain CD007_14430 SM00448 cheY-homologous receiver domain CD007_14430 SM00850 LytTr DNA-binding domain CD007_14435 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CD007_14435 SM00387 Histidine kinase-like ATPases CD007_14445 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CD007_14460 SM00382 ATPases associated with a variety of cellular activities CD007_14480 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CD007_14510 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CD007_14510 SM01232 CD007_14510 CD007_14515 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CD007_14515 SM00474 3'-5' exonuclease CD007_14515 SM00475 5'-3' exonuclease CD007_14515 SM00482 DNA polymerase A domain CD007_14520 SM00091 PAS domain CD007_14520 SM00387 Histidine kinase-like ATPases CD007_14520 SM00388 His Kinase A (phosphoacceptor) domain CD007_14525 SM00448 cheY-homologous receiver domain CD007_14525 SM00862 Transcriptional regulatory protein, C terminal CD007_14540 SM01329 CD007_14540 CD007_14585 SM00919 Malic enzyme, NAD binding domain CD007_14585 SM01274 CD007_14585 CD007_14590 SM00481 DNA polymerase alpha chain like domain CD007_14620 SM00116 Domain in cystathionine beta-synthase and other proteins. CD007_14635 SM00904 Riboflavin kinase CD007_14655 SM00382 ATPases associated with a variety of cellular activities CD007_14670 SM00062 Bacterial periplasmic substrate-binding proteins CD007_14675 SM00062 Bacterial periplasmic substrate-binding proteins CD007_14690 SM00849 Metallo-beta-lactamase superfamily CD007_14715 SM00852 Probable molybdopterin binding domain CD007_14780 SM00981 CD007_14780 CD007_14810 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CD007_14815 SM00267 diguanylate cyclase CD007_14825 SM00363 S4 RNA-binding domain CD007_14825 SM01390 CD007_14825 CD007_14830 SM00363 S4 RNA-binding domain CD007_14850 SM00116 Domain in cystathionine beta-synthase and other proteins. CD007_14870 SM00354 helix_turn _helix lactose operon repressor CD007_14875 SM00830 Chorismate mutase type II CD007_14900 SM00382 ATPases associated with a variety of cellular activities CD007_14900 SM00843 CD007_14900 CD007_14935 SM00919 Malic enzyme, NAD binding domain CD007_14935 SM01274 CD007_14935 CD007_14940 SM00849 Metallo-beta-lactamase superfamily CD007_14960 SM00642 Alpha-amylase domain CD007_14965 SM00046 Diacylglycerol kinase catalytic domain (presumed) CD007_15000 SM00382 ATPases associated with a variety of cellular activities CD007_15005 SM00420 helix_turn_helix, Deoxyribose operon repressor CD007_15010 SM00363 S4 RNA-binding domain CD007_15060 SM00342 helix_turn_helix, arabinose operon control protein CD007_15085 SM00729 Elongator protein 3, MiaB family, Radical SAM CD007_15085 SM00876 Biotin and Thiamin Synthesis associated domain CD007_15115 SM00354 helix_turn _helix lactose operon repressor CD007_15140 SM00450 Rhodanese Homology Domain CD007_15155 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CD007_15155 SM00091 PAS domain CD007_15175 SM00382 ATPases associated with a variety of cellular activities CD007_15180 SM00387 Histidine kinase-like ATPases CD007_15185 SM00448 cheY-homologous receiver domain CD007_15185 SM00862 Transcriptional regulatory protein, C terminal CD007_15195 SM00382 ATPases associated with a variety of cellular activities CD007_15210 SM00382 ATPases associated with a variety of cellular activities CD007_15215 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_15225 SM00729 Elongator protein 3, MiaB family, Radical SAM CD007_15285 SM00382 ATPases associated with a variety of cellular activities CD007_15325 SM01234 CD007_15325 CD007_15330 SM00947 Carbonic anhydrase CD007_15365 SM00382 ATPases associated with a variety of cellular activities CD007_15375 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CD007_15415 SM00984 UDP binding domain CD007_15475 SM00642 Alpha-amylase domain CD007_15610 SM00244 prohibitin homologues CD007_15665 SM00047 Lysozyme subfamily 2 CD007_15715 SM00420 helix_turn_helix, Deoxyribose operon repressor CD007_15715 SM01134 CD007_15715 CD007_15720 SM01007 Class II Aldolase and Adducin N-terminal domain CD007_15730 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CD007_15730 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CD007_15730 SM00319 Homologues of the ligand binding domain of Tar CD007_15735 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CD007_15735 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CD007_15735 SM00319 Homologues of the ligand binding domain of Tar CD007_15740 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CD007_15740 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CD007_15740 SM00319 Homologues of the ligand binding domain of Tar CD007_15745 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CD007_15745 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CD007_15745 SM00319 Homologues of the ligand binding domain of Tar CD007_15765 SM00642 Alpha-amylase domain CD007_15770 SM01091 Transporter associated domain CD007_15825 SM00316 Ribosomal protein S1-like RNA-binding domain CD007_15835 SM00344 helix_turn_helix ASNC type CD007_15855 SM00387 Histidine kinase-like ATPases CD007_15855 SM00388 His Kinase A (phosphoacceptor) domain CD007_15860 SM01298 CD007_15860 CD007_15865 SM00479 CD007_15865 CD007_15895 SM00091 PAS domain CD007_15895 SM00387 Histidine kinase-like ATPases CD007_15900 SM00448 cheY-homologous receiver domain CD007_15910 SM00382 ATPases associated with a variety of cellular activities CD007_15975 SM00421 helix_turn_helix, Lux Regulon CD007_15975 SM00448 cheY-homologous receiver domain CD007_15980 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CD007_15980 SM00387 Histidine kinase-like ATPases CD007_16030 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CD007_16075 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CD007_16075 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CD007_16085 SM00923 MbtH-like protein CD007_16090 SM00823 Phosphopantetheine attachment site CD007_16090 SM00824 Thioesterase CD007_16175 SM01240 CD007_16175 CD007_16275 SM00729 Elongator protein 3, MiaB family, Radical SAM CD007_16355 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain CD007_16390 SM00382 ATPases associated with a variety of cellular activities CD007_16395 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_16395 SM00866 CD007_16395 CD007_16425 SM00465 GIY-YIG type nucleases (URI domain) CD007_16450 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CD007_16475 SM00382 ATPases associated with a variety of cellular activities CD007_16505 SM00382 ATPases associated with a variety of cellular activities CD007_16505 SM00930 CD007_16505 CD007_16520 SM00493 CD007_16520 CD007_16575 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_16605 SM00382 ATPases associated with a variety of cellular activities CD007_16630 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CD007_16635 SM00448 cheY-homologous receiver domain CD007_16635 SM00862 Transcriptional regulatory protein, C terminal CD007_16640 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CD007_16640 SM00387 Histidine kinase-like ATPases CD007_16640 SM00388 His Kinase A (phosphoacceptor) domain CD007_16680 SM00421 helix_turn_helix, Lux Regulon CD007_16680 SM00448 cheY-homologous receiver domain CD007_16685 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CD007_16685 SM00387 Histidine kinase-like ATPases CD007_16720 SM00382 ATPases associated with a variety of cellular activities CD007_16745 SM00387 Histidine kinase-like ATPases CD007_16745 SM00388 His Kinase A (phosphoacceptor) domain CD007_16750 SM00448 cheY-homologous receiver domain CD007_16750 SM00862 Transcriptional regulatory protein, C terminal CD007_16770 SM00835 Cupin CD007_16785 SM00382 ATPases associated with a variety of cellular activities CD007_16795 SM00382 ATPases associated with a variety of cellular activities CD007_16990 SM00316 Ribosomal protein S1-like RNA-binding domain CD007_16990 SM00357 Cold shock protein domain CD007_16990 SM00955 CD007_16990 CD007_17010 SM00530 Helix-turn-helix XRE-family like proteins CD007_17015 SM00530 Helix-turn-helix XRE-family like proteins CD007_17020 SM00530 Helix-turn-helix XRE-family like proteins CD007_17030 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CD007_17030 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CD007_17035 SM00387 Histidine kinase-like ATPases CD007_17035 SM00388 His Kinase A (phosphoacceptor) domain CD007_17040 SM00448 cheY-homologous receiver domain CD007_17040 SM00862 Transcriptional regulatory protein, C terminal CD007_17055 SM00382 ATPases associated with a variety of cellular activities CD007_17070 SM01260 CD007_17070 CD007_17075 SM00382 ATPases associated with a variety of cellular activities CD007_17100 SM00116 Domain in cystathionine beta-synthase and other proteins. CD007_17100 SM00382 ATPases associated with a variety of cellular activities CD007_17125 SM00116 Domain in cystathionine beta-synthase and other proteins. CD007_17125 SM00382 ATPases associated with a variety of cellular activities CD007_17160 SM01192 CD007_17160 CD007_17160 SM01193 CD007_17160 CD007_17180 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CD007_17195 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_17225 SM00636 CD007_17225 CD007_17245 SM00421 helix_turn_helix, Lux Regulon CD007_17245 SM00448 cheY-homologous receiver domain CD007_17260 SM00382 ATPases associated with a variety of cellular activities CD007_17270 SM00331 Sigma factor PP2C-like phosphatases CD007_17300 SM00354 helix_turn _helix lactose operon repressor CD007_17305 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_17305 SM00895 CD007_17305 CD007_17405 SM00530 Helix-turn-helix XRE-family like proteins CD007_17445 SM00640 Glycosyl hydrolases family 32 CD007_17490 SM00642 Alpha-amylase domain CD007_17520 SM00642 Alpha-amylase domain CD007_17525 SM00354 helix_turn _helix lactose operon repressor CD007_17545 SM00947 Carbonic anhydrase CD007_17560 SM00382 ATPases associated with a variety of cellular activities CD007_17565 SM00387 Histidine kinase-like ATPases CD007_17570 SM00448 cheY-homologous receiver domain CD007_17570 SM00862 Transcriptional regulatory protein, C terminal CD007_17625 SM00028 Tetratricopeptide repeats CD007_17630 SM00382 ATPases associated with a variety of cellular activities CD007_17735 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_17735 SM00866 CD007_17735 CD007_17745 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_17760 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_17800 SM00382 ATPases associated with a variety of cellular activities CD007_17805 SM00487 DEAD-like helicases superfamily CD007_17805 SM00490 helicase superfamily c-terminal domain CD007_17830 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CD007_17840 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CD007_17840 SM00245 tail specific protease CD007_17850 SM00382 ATPases associated with a variety of cellular activities CD007_17870 SM00957 SecA DEAD-like domain CD007_17870 SM00958 SecA preprotein cross-linking domain CD007_17960 SM00487 DEAD-like helicases superfamily CD007_17960 SM00490 helicase superfamily c-terminal domain CD007_17970 SM00421 helix_turn_helix, Lux Regulon CD007_17970 SM00448 cheY-homologous receiver domain CD007_17975 SM00387 Histidine kinase-like ATPases CD007_18015 SM00984 UDP binding domain CD007_18040 SM00646 CD007_18040 CD007_18085 SM00382 ATPases associated with a variety of cellular activities CD007_18145 SM00047 Lysozyme subfamily 2 CD007_18145 SM00287 Bacterial SH3 domain homologues CD007_18195 SM00854 Bacterial capsule synthesis protein PGA_cap CD007_18210 SM00354 helix_turn _helix lactose operon repressor CD007_18225 SM00382 ATPases associated with a variety of cellular activities CD007_18240 SM00287 Bacterial SH3 domain homologues CD007_18295 SM00903 Flavin reductase like domain CD007_18310 SM00344 helix_turn_helix ASNC type CD007_18360 SM00984 UDP binding domain CD007_18390 SM00487 DEAD-like helicases superfamily CD007_18390 SM00490 helicase superfamily c-terminal domain CD007_18405 SM00420 helix_turn_helix, Deoxyribose operon repressor CD007_18405 SM01134 CD007_18405 CD007_18435 SM00448 cheY-homologous receiver domain CD007_18435 SM00862 Transcriptional regulatory protein, C terminal CD007_18465 SM00028 Tetratricopeptide repeats CD007_18495 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_18505 SM00710 Parallel beta-helix repeats CD007_18505 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses CD007_18535 SM00938 Nitrogen regulatory protein P-II CD007_18540 SM00014 Acid phosphatase homologues CD007_18570 SM00155 Phospholipase D. Active site motifs. CD007_18575 SM00422 helix_turn_helix, mercury resistance CD007_18630 SM00028 Tetratricopeptide repeats CD007_18640 SM00729 Elongator protein 3, MiaB family, Radical SAM CD007_18655 SM00327 von Willebrand factor (vWF) type A domain CD007_18665 SM00327 von Willebrand factor (vWF) type A domain CD007_18700 SM00382 ATPases associated with a variety of cellular activities CD007_18760 SM00226 Low molecular weight phosphatase family CD007_18800 SM00937 CD007_18800 CD007_18820 SM00919 Malic enzyme, NAD binding domain CD007_18820 SM01274 CD007_18820 CD007_18835 SM00357 Cold shock protein domain CD007_18835 SM00382 ATPases associated with a variety of cellular activities CD007_18835 SM00959 Rho termination factor, N-terminal domain CD007_18860 SM00448 cheY-homologous receiver domain CD007_18890 SM00155 Phospholipase D. Active site motifs. CD007_18910 SM00382 ATPases associated with a variety of cellular activities CD007_18915 SM00155 Phospholipase D. Active site motifs. CD007_18940 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CD007_18955 SM00100 Cyclic nucleotide-monophosphate binding domain CD007_18955 SM00419 helix_turn_helix, cAMP Regulatory protein CD007_18965 SM00836 DALR anticodon binding domain CD007_18965 SM01016 Arginyl tRNA synthetase N terminal dom CD007_18985 SM00729 Elongator protein 3, MiaB family, Radical SAM CD007_19035 SM00028 Tetratricopeptide repeats CD007_19065 SM00382 ATPases associated with a variety of cellular activities CD007_19110 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_19115 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CD007_19135 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CD007_19230 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CD007_19270 SM00858 CD007_19270 CD007_19325 SM00986 Uracil DNA glycosylase superfamily CD007_19325 SM00987 UreE urease accessory protein, C-terminal domain CD007_19360 SM00640 Glycosyl hydrolases family 32 CD007_19375 SM01061 CAT RNA binding domain CD007_19525 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CD007_19560 SM01061 CAT RNA binding domain CD007_19575 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_19580 SM00363 S4 RNA-binding domain CD007_19590 SM00530 Helix-turn-helix XRE-family like proteins CD007_19605 SM00954 Region found in RelA / SpoT proteins CD007_19690 SM01060 CD007_19690 CD007_19705 SM00382 ATPases associated with a variety of cellular activities CD007_19740 SM00382 ATPases associated with a variety of cellular activities CD007_19745 SM00382 ATPases associated with a variety of cellular activities CD007_19790 SM00382 ATPases associated with a variety of cellular activities CD007_19840 SM00421 helix_turn_helix, Lux Regulon CD007_19840 SM00448 cheY-homologous receiver domain CD007_19875 SM00882 Coenzyme A transferase CD007_19880 SM00882 Coenzyme A transferase CD007_19910 SM01060 CD007_19910 CD007_19925 SM01061 CAT RNA binding domain CD007_19940 SM00487 DEAD-like helicases superfamily CD007_19940 SM00490 helicase superfamily c-terminal domain CD007_20090 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CD007_20100 SM01133 CD007_20100 CD007_20130 SM00382 ATPases associated with a variety of cellular activities CD007_20140 SM00062 Bacterial periplasmic substrate-binding proteins CD007_20205 SM00382 ATPases associated with a variety of cellular activities CD007_20210 SM00387 Histidine kinase-like ATPases CD007_20215 SM00448 cheY-homologous receiver domain CD007_20215 SM00862 Transcriptional regulatory protein, C terminal CD007_20270 SM00420 helix_turn_helix, Deoxyribose operon repressor CD007_20270 SM01134 CD007_20270 CD007_20295 SM00387 Histidine kinase-like ATPases CD007_20320 SM00382 ATPases associated with a variety of cellular activities CD007_20350 SM00564 beta-propeller repeat CD007_20385 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_20410 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_20410 SM00895 CD007_20410 CD007_20425 SM01350 CD007_20425 CD007_20460 SM00345 helix_turn_helix gluconate operon transcriptional repressor CD007_20460 SM00866 CD007_20460 CD007_20475 SM00382 ATPases associated with a variety of cellular activities CD007_20575 SM00091 PAS domain CD007_20575 SM00382 ATPases associated with a variety of cellular activities CD007_20585 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CD007_20590 SM00849 Metallo-beta-lactamase superfamily CD007_20605 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) CD007_20605 SM00091 PAS domain CD007_20605 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CD007_20605 SM00387 Histidine kinase-like ATPases CD007_20605 SM00388 His Kinase A (phosphoacceptor) domain CD007_20610 SM00448 cheY-homologous receiver domain CD007_20610 SM00862 Transcriptional regulatory protein, C terminal CD007_20635 SM00788 Adenylosuccinate synthetase CD007_20645 SM00382 ATPases associated with a variety of cellular activities CD007_20680 SM00267 diguanylate cyclase CD007_20705 SM01131 CD007_20705 CD007_20725 SM00422 helix_turn_helix, mercury resistance CD007_20740 SM00849 Metallo-beta-lactamase superfamily CD007_20745 SM00347 helix_turn_helix multiple antibiotic resistance protein CD007_20785 SM00422 helix_turn_helix, mercury resistance CD007_20810 SM01266 CD007_20810 CD007_20820 SM00354 helix_turn _helix lactose operon repressor CD007_20850 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CD007_20870 SM00470 ParB-like nuclease domain CD007_20885 SM00470 ParB-like nuclease domain CD007_20895 SM01228 CD007_20895 CD007_20905 SM00322 K homology RNA-binding domain CD007_20905 SM00393 Putative single-stranded nucleic acids-binding domain CD007_20905 SM01245 CD007_20905