A1D11_00075	PWY-7180	2'-deoxy-α-D-ribose 1-phosphate degradation
A1D11_00085	PWY-7181	pyrimidine deoxyribonucleosides degradation
A1D11_00100	PWY-5028	L-histidine degradation II
A1D11_00100	PWY-5030	L-histidine degradation III
A1D11_00105	PWY-5028	L-histidine degradation II
A1D11_00105	PWY-5030	L-histidine degradation III
A1D11_00110	PWY-5028	L-histidine degradation II
A1D11_00110	PWY-5030	L-histidine degradation III
A1D11_00125	PWY-6502	oxidized GTP and dGTP detoxification
A1D11_00235	PWY-5741	ethylmalonyl-CoA pathway
A1D11_00235	PWY-5743	3-hydroxypropanoate cycle
A1D11_00235	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
A1D11_00235	PWY-6728	methylaspartate cycle
A1D11_00235	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
A1D11_00235	PWY-7854	A1D11_00235
A1D11_00320	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
A1D11_00320	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
A1D11_00320	PWY-6936	seleno-amino acid biosynthesis
A1D11_00320	PWY-702	L-methionine biosynthesis II
A1D11_00410	PWY-3821	galactose degradation III
A1D11_00410	PWY-6317	galactose degradation I (Leloir pathway)
A1D11_00410	PWY-6397	mycolyl-arabinogalactan-peptidoglycan complex biosynthesis
A1D11_00410	PWY-6527	stachyose degradation
A1D11_00410	PWY-7328	superpathway of UDP-glucose-derived O-antigen building blocks biosynthesis
A1D11_00410	PWY-7344	UDP-D-galactose biosynthesis
A1D11_00560	PWY-5057	L-valine degradation II
A1D11_00560	PWY-5076	L-leucine degradation III
A1D11_00560	PWY-5078	L-isoleucine degradation II
A1D11_00560	PWY-5101	L-isoleucine biosynthesis II
A1D11_00560	PWY-5103	L-isoleucine biosynthesis III
A1D11_00560	PWY-5104	L-isoleucine biosynthesis IV
A1D11_00560	PWY-5108	L-isoleucine biosynthesis V
A1D11_00560	PWY-7767	A1D11_00560
A1D11_00595	PWY-5839	menaquinol-7 biosynthesis
A1D11_00595	PWY-5851	demethylmenaquinol-9 biosynthesis
A1D11_00595	PWY-5852	demethylmenaquinol-8 biosynthesis I
A1D11_00595	PWY-5853	demethylmenaquinol-6 biosynthesis I
A1D11_00595	PWY-5890	menaquinol-10 biosynthesis
A1D11_00595	PWY-5891	menaquinol-11 biosynthesis
A1D11_00595	PWY-5892	menaquinol-12 biosynthesis
A1D11_00595	PWY-5895	menaquinol-13 biosynthesis
A1D11_00655	PWY-5386	methylglyoxal degradation I
A1D11_00710	PWY-6897	thiamin salvage II
A1D11_00710	PWY-7356	thiamin salvage IV (yeast)
A1D11_00710	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
A1D11_00715	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
A1D11_00715	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
A1D11_00715	PWY-6897	thiamin salvage II
A1D11_00715	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
A1D11_00715	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
A1D11_00715	PWY-7356	thiamin salvage IV (yeast)
A1D11_00715	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
A1D11_00760	PWY-3821	galactose degradation III
A1D11_00760	PWY-6317	galactose degradation I (Leloir pathway)
A1D11_00760	PWY-6527	stachyose degradation
A1D11_00765	PWY-6317	galactose degradation I (Leloir pathway)
A1D11_00765	PWY-6527	stachyose degradation
A1D11_00780	PWY-3781	aerobic respiration I (cytochrome c)
A1D11_00780	PWY-4521	arsenite oxidation I (respiratory)
A1D11_00780	PWY-6692	Fe(II) oxidation
A1D11_00780	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
A1D11_00805	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
A1D11_00805	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
A1D11_00805	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
A1D11_00805	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
A1D11_00870	PWY-6910	hydroxymethylpyrimidine salvage
A1D11_00870	PWY-7356	thiamin salvage IV (yeast)
A1D11_00870	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
A1D11_00940	PWY-3221	dTDP-L-rhamnose biosynthesis II
A1D11_00940	PWY-6808	dTDP-D-forosamine biosynthesis
A1D11_00940	PWY-6942	dTDP-D-desosamine biosynthesis
A1D11_00940	PWY-6953	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-galactose biosynthesis
A1D11_00940	PWY-6973	dTDP-D-olivose, dTDP-D-oliose and dTDP-D-mycarose biosynthesis
A1D11_00940	PWY-6974	dTDP-L-olivose biosynthesis
A1D11_00940	PWY-6976	dTDP-L-mycarose biosynthesis
A1D11_00940	PWY-7104	dTDP-L-megosamine biosynthesis
A1D11_00940	PWY-7301	dTDP-&beta;-L-noviose biosynthesis
A1D11_00940	PWY-7312	dTDP-D-&beta;-fucofuranose biosynthesis
A1D11_00940	PWY-7315	dTDP-<i>N</i>-acetylthomosamine biosynthesis
A1D11_00940	PWY-7316	dTDP-<i>N</i>-acetylviosamine biosynthesis
A1D11_00940	PWY-7318	dTDP-3-acetamido-3,6-dideoxy-&alpha;-D-glucose biosynthesis
A1D11_00940	PWY-7413	dTDP-6-deoxy-&alpha;-D-allose biosynthesis
A1D11_00940	PWY-7414	dTDP-&alpha;-D-mycaminose biosynthesis
A1D11_00940	PWY-7440	dTDP-&beta;-L-4-<i>epi</i>-vancosamine biosynthesis
A1D11_00940	PWY-7657	dTDP-&beta;-L-digitoxose biosynthesis
A1D11_00940	PWY-7688	A1D11_00940
A1D11_00940	PWY-7814	A1D11_00940
A1D11_00975	PWY-1281	sulfoacetaldehyde degradation I
A1D11_00975	PWY-5482	pyruvate fermentation to acetate II
A1D11_00975	PWY-5485	pyruvate fermentation to acetate IV
A1D11_00975	PWY-5497	purine nucleobases degradation II (anaerobic)
A1D11_00975	PWY-6637	sulfolactate degradation II
A1D11_00990	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
A1D11_00990	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
A1D11_01045	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
A1D11_01045	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
A1D11_01045	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
A1D11_01045	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
A1D11_01055	PWY-40	putrescine biosynthesis I
A1D11_01055	PWY-6305	putrescine biosynthesis IV
A1D11_01160	PWY-6748	nitrate reduction VII (denitrification)
A1D11_01165	PWY-6748	nitrate reduction VII (denitrification)
A1D11_01225	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
A1D11_01225	PWY-7177	UTP and CTP dephosphorylation II
A1D11_01225	PWY-7185	UTP and CTP dephosphorylation I
A1D11_01240	PWY-1042	glycolysis IV (plant cytosol)
A1D11_01240	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
A1D11_01240	PWY-5484	glycolysis II (from fructose 6-phosphate)
A1D11_01240	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A1D11_01240	PWY-7385	1,3-propanediol biosynthesis (engineered)
A1D11_01245	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
A1D11_01245	PWY-5723	Rubisco shunt
A1D11_01250	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
A1D11_01250	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
A1D11_01250	PWY-7953	A1D11_01250
A1D11_01255	PWY-5484	glycolysis II (from fructose 6-phosphate)
A1D11_01260	PWY-7980	A1D11_01260
A1D11_01270	PWY-7199	pyrimidine deoxyribonucleosides salvage
A1D11_01350	PWY-1622	formaldehyde assimilation I (serine pathway)
A1D11_01350	PWY-181	photorespiration
A1D11_01350	PWY-2161	folate polyglutamylation
A1D11_01350	PWY-2201	folate transformations I
A1D11_01350	PWY-3661	glycine betaine degradation I
A1D11_01350	PWY-3661-1	glycine betaine degradation II (mammalian)
A1D11_01350	PWY-3841	folate transformations II
A1D11_01350	PWY-5497	purine nucleobases degradation II (anaerobic)
A1D11_01355	PWY-7183	pyrimidine nucleobases salvage I
A1D11_01385	PWY-7980	A1D11_01385
A1D11_01395	PWY-7980	A1D11_01395
A1D11_01420	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
A1D11_01420	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
A1D11_01420	PWY-7953	A1D11_01420
A1D11_01445	PWY-6823	molybdenum cofactor biosynthesis
A1D11_01465	PWY-5704	urea degradation II
A1D11_01470	PWY-5704	urea degradation II
A1D11_01475	PWY-5704	urea degradation II
A1D11_01510	PWY-6143	CMP-pseudaminate biosynthesis
A1D11_01520	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
A1D11_01520	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
A1D11_01520	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
A1D11_01520	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
A1D11_01525	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
A1D11_01570	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
A1D11_01570	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
A1D11_01570	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
A1D11_01570	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
A1D11_01640	PWY-5971	palmitate biosynthesis II (bacteria and plants)
A1D11_01640	PWY-5973	<i>cis</i>-vaccenate biosynthesis
A1D11_01640	PWY-5989	stearate biosynthesis II (bacteria and plants)
A1D11_01640	PWY-5994	palmitate biosynthesis I (animals and fungi)
A1D11_01640	PWY-6113	superpathway of mycolate biosynthesis
A1D11_01640	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
A1D11_01640	PWY-6519	8-amino-7-oxononanoate biosynthesis I
A1D11_01640	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
A1D11_01640	PWY-7663	gondoate biosynthesis (anaerobic)
A1D11_01640	PWY-7664	oleate biosynthesis IV (anaerobic)
A1D11_01640	PWY-7858	A1D11_01640
A1D11_01640	PWYG-321	mycolate biosynthesis
A1D11_01700	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
A1D11_01700	PWY-7820	A1D11_01700
A1D11_01775	PWY-4041	&gamma;-glutamyl cycle
A1D11_01775	PWY-4061	glutathione-mediated detoxification I
A1D11_01775	PWY-5826	hypoglycin biosynthesis
A1D11_01775	PWY-6842	glutathione-mediated detoxification II
A1D11_01775	PWY-7112	4-hydroxy-2-nonenal detoxification
A1D11_01775	PWY-7559	glutathione degradation (DUG pathway - yeast)
A1D11_01785	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
A1D11_01785	PWY-5723	Rubisco shunt
A1D11_01825	PWY-5101	L-isoleucine biosynthesis II
A1D11_01825	PWY-5103	L-isoleucine biosynthesis III
A1D11_01825	PWY-5104	L-isoleucine biosynthesis IV
A1D11_01825	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
A1D11_01825	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
A1D11_01825	PWY-6389	(<i>S</i>)-acetoin biosynthesis
A1D11_01825	PWY-7111	pyruvate fermentation to isobutanol (engineered)
A1D11_01830	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
A1D11_01950	PWY-3861	mannitol degradation II
A1D11_01950	PWY-3881	mannitol biosynthesis
A1D11_01950	PWY-5659	GDP-mannose biosynthesis
A1D11_01950	PWY-6992	1,5-anhydrofructose degradation
A1D11_01950	PWY-7456	mannan degradation
A1D11_01950	PWY-7586	&beta;-1,4-D-mannosyl-<i>N</i>-acetyl-D-glucosamine degradation
A1D11_01950	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
A1D11_01965	PWY-7815	A1D11_01965
A1D11_01965	PWY-7816	A1D11_01965
A1D11_01965	PWY-7819	A1D11_01965
A1D11_01970	PWY-7815	A1D11_01970
A1D11_01970	PWY-7816	A1D11_01970
A1D11_01970	PWY-7819	A1D11_01970
A1D11_01995	PWY-3801	sucrose degradation II (sucrose synthase)
A1D11_01995	PWY-6527	stachyose degradation
A1D11_01995	PWY-7238	sucrose biosynthesis II
A1D11_01995	PWY-7343	UDP-glucose biosynthesis
A1D11_01995	PWY-7817	A1D11_01995
A1D11_02045	PWY-7346	UDP-&alpha;-D-glucuronate biosynthesis (from UDP-glucose)
A1D11_02045	PWY-7820	A1D11_02045
A1D11_02070	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
A1D11_02070	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
A1D11_02070	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
A1D11_02310	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
A1D11_02310	PWY-6855	chitin degradation I (archaea)
A1D11_02310	PWY-6906	chitin derivatives degradation
A1D11_02315	PWY-6906	chitin derivatives degradation
A1D11_02315	PWY-7077	<i>N</i>-acetyl-D-galactosamine degradation
A1D11_02315	PWY-7395	D-galactosamine and <i>N</i>-acetyl-D-galactosamine degradation
A1D11_02335	PWY-7805	A1D11_02335
A1D11_02335	PWY-7807	A1D11_02335
A1D11_02485	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
A1D11_02485	PWY-5743	3-hydroxypropanoate cycle
A1D11_02485	PWY-5744	glyoxylate assimilation
A1D11_02485	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
A1D11_02485	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A1D11_02485	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
A1D11_02485	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
A1D11_02760	PWY-1042	glycolysis IV (plant cytosol)
A1D11_02760	PWY-5484	glycolysis II (from fructose 6-phosphate)
A1D11_02760	PWY-6901	superpathway of glucose and xylose degradation
A1D11_02760	PWY-7003	glycerol degradation to butanol
A1D11_02765	PWY-1042	glycolysis IV (plant cytosol)
A1D11_02765	PWY-5484	glycolysis II (from fructose 6-phosphate)
A1D11_02765	PWY-6886	1-butanol autotrophic biosynthesis
A1D11_02765	PWY-6901	superpathway of glucose and xylose degradation
A1D11_02765	PWY-7003	glycerol degradation to butanol
A1D11_02770	PWY-1042	glycolysis IV (plant cytosol)
A1D11_02770	PWY-5484	glycolysis II (from fructose 6-phosphate)
A1D11_02770	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A1D11_02770	PWY-7003	glycerol degradation to butanol
A1D11_02775	PWY-1042	glycolysis IV (plant cytosol)
A1D11_02775	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
A1D11_02775	PWY-5484	glycolysis II (from fructose 6-phosphate)
A1D11_02775	PWY-5723	Rubisco shunt
A1D11_02775	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A1D11_02775	PWY-6886	1-butanol autotrophic biosynthesis
A1D11_02775	PWY-6901	superpathway of glucose and xylose degradation
A1D11_02775	PWY-7003	glycerol degradation to butanol
A1D11_02775	PWY-7124	ethylene biosynthesis V (engineered)
A1D11_02775	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
A1D11_02780	PWY-1042	glycolysis IV (plant cytosol)
A1D11_02780	PWY-1622	formaldehyde assimilation I (serine pathway)
A1D11_02780	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
A1D11_02780	PWY-5484	glycolysis II (from fructose 6-phosphate)
A1D11_02780	PWY-5723	Rubisco shunt
A1D11_02780	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A1D11_02780	PWY-6886	1-butanol autotrophic biosynthesis
A1D11_02780	PWY-6901	superpathway of glucose and xylose degradation
A1D11_02780	PWY-7003	glycerol degradation to butanol
A1D11_02780	PWY-7124	ethylene biosynthesis V (engineered)
A1D11_02780	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
A1D11_02810	PWY-6519	8-amino-7-oxononanoate biosynthesis I
A1D11_02810	PWY-6578	8-amino-7-oxononanoate biosynthesis III
A1D11_02810	PWY-7147	8-amino-7-oxononanoate biosynthesis II
A1D11_03040	PWY-6683	sulfate reduction III (assimilatory)
A1D11_03045	PWY-6683	sulfate reduction III (assimilatory)
A1D11_03150	PWY-6698	oxalate degradation V
A1D11_03260	PWY-5392	reductive TCA cycle II
A1D11_03260	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
A1D11_03260	PWY-5690	TCA cycle II (plants and fungi)
A1D11_03260	PWY-5913	TCA cycle VI (obligate autotrophs)
A1D11_03260	PWY-6728	methylaspartate cycle
A1D11_03260	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
A1D11_03260	PWY-7254	TCA cycle VII (acetate-producers)
A1D11_03260	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
A1D11_03335	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
A1D11_03335	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
A1D11_03340	PWY-1361	benzoyl-CoA degradation I (aerobic)
A1D11_03340	PWY-5109	2-methylbutanoate biosynthesis
A1D11_03340	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
A1D11_03340	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
A1D11_03340	PWY-5177	glutaryl-CoA degradation
A1D11_03340	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
A1D11_03340	PWY-6435	4-hydroxybenzoate biosynthesis V
A1D11_03340	PWY-6583	pyruvate fermentation to butanol I
A1D11_03340	PWY-6863	pyruvate fermentation to hexanol
A1D11_03340	PWY-6883	pyruvate fermentation to butanol II
A1D11_03340	PWY-6944	androstenedione degradation
A1D11_03340	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
A1D11_03340	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
A1D11_03340	PWY-7007	methyl ketone biosynthesis
A1D11_03340	PWY-7046	4-coumarate degradation (anaerobic)
A1D11_03340	PWY-7094	fatty acid salvage
A1D11_03340	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
A1D11_03340	PWY-735	jasmonic acid biosynthesis
A1D11_03340	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
A1D11_03340	PWY-7606	docosahexaenoate biosynthesis III (mammals)
A1D11_03340	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
A1D11_03340	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
A1D11_03340	PWY-7726	A1D11_03340
A1D11_03340	PWY-7778	A1D11_03340
A1D11_03340	PWY-7779	A1D11_03340
A1D11_03415	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
A1D11_03495	PWY-6832	2-aminoethylphosphonate degradation II
A1D11_03600	PWY-5697	allantoin degradation to ureidoglycolate I (urea producing)
A1D11_03600	PWY-5698	allantoin degradation to ureidoglycolate II (ammonia producing)
A1D11_03645	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
A1D11_03645	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
A1D11_03690	PWY-702	L-methionine biosynthesis II
A1D11_03730	PWY-2941	L-lysine biosynthesis II
A1D11_03730	PWY-5097	L-lysine biosynthesis VI
A1D11_03745	PWY-101	photosynthesis light reactions
A1D11_03810	PWY-5901	2,3-dihydroxybenzoate biosynthesis
A1D11_03815	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
A1D11_03815	PWY-5901	2,3-dihydroxybenzoate biosynthesis
A1D11_03815	PWY-6406	salicylate biosynthesis I
A1D11_03905	PWY-5381	pyridine nucleotide cycling (plants)
A1D11_04035	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
A1D11_04035	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
A1D11_04035	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
A1D11_04035	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
A1D11_04110	PWY-3801	sucrose degradation II (sucrose synthase)
A1D11_04110	PWY-5054	sorbitol biosynthesis I
A1D11_04110	PWY-5384	sucrose degradation IV (sucrose phosphorylase)
A1D11_04110	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
A1D11_04110	PWY-5659	GDP-mannose biosynthesis
A1D11_04110	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A1D11_04110	PWY-621	sucrose degradation III (sucrose invertase)
A1D11_04110	PWY-622	starch biosynthesis
A1D11_04110	PWY-6981	chitin biosynthesis
A1D11_04110	PWY-6992	1,5-anhydrofructose degradation
A1D11_04110	PWY-7238	sucrose biosynthesis II
A1D11_04110	PWY-7347	sucrose biosynthesis III
A1D11_04110	PWY-7385	1,3-propanediol biosynthesis (engineered)
A1D11_04160	PWY-723	alkylnitronates degradation
A1D11_04205	PWY-4261	glycerol degradation I
A1D11_04235	PWY-5785	di-<i>trans</i>,poly-<i>cis</i>-undecaprenyl phosphate biosynthesis
A1D11_04250	PWY-7883	A1D11_04250
A1D11_04280	PWY-3722	glycine betaine biosynthesis II (Gram-positive bacteria)
A1D11_04280	PWY-7494	choline degradation IV
A1D11_04445	PWY-5067	glycogen biosynthesis II (from UDP-D-Glucose)
A1D11_04445	PWY-622	starch biosynthesis
A1D11_04445	PWY-7900	A1D11_04445
A1D11_04450	PWY-622	starch biosynthesis
A1D11_04450	PWY-7902	A1D11_04450
A1D11_04460	PWY-622	starch biosynthesis
A1D11_04465	PWY-5941	glycogen degradation II (eukaryotic)
A1D11_04465	PWY-6731	starch degradation III
A1D11_04465	PWY-6737	starch degradation V
A1D11_04465	PWY-7238	sucrose biosynthesis II
A1D11_04515	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
A1D11_04515	PWY-5901	2,3-dihydroxybenzoate biosynthesis
A1D11_04515	PWY-6406	salicylate biosynthesis I
A1D11_04520	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
A1D11_04525	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
A1D11_04530	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
A1D11_04535	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
A1D11_04540	PWY-5837	1,4-dihydroxy-2-naphthoate biosynthesis I
A1D11_04590	PWY-241	C4 photosynthetic carbon assimilation cycle, NADP-ME type
A1D11_04590	PWY-5743	3-hydroxypropanoate cycle
A1D11_04590	PWY-5744	glyoxylate assimilation
A1D11_04590	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
A1D11_04590	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A1D11_04590	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
A1D11_04590	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
A1D11_04600	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
A1D11_04600	PWY-6153	autoinducer AI-2 biosynthesis I
A1D11_04600	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
A1D11_04630	PWY-6502	oxidized GTP and dGTP detoxification
A1D11_04660	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
A1D11_04660	PWY-7117	C4 photosynthetic carbon assimilation cycle, PEPCK type
A1D11_04665	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
A1D11_04665	PWY-5912	2'-deoxymugineic acid phytosiderophore biosynthesis
A1D11_04805	PWY-6578	8-amino-7-oxononanoate biosynthesis III
A1D11_04815	PWY-6519	8-amino-7-oxononanoate biosynthesis I
A1D11_04815	PWY-6578	8-amino-7-oxononanoate biosynthesis III
A1D11_04815	PWY-7147	8-amino-7-oxononanoate biosynthesis II
A1D11_04820	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
A1D11_04825	PWY-7380	biotin biosynthesis from 8-amino-7-oxononanoate II
A1D11_04920	PWY-6936	seleno-amino acid biosynthesis
A1D11_05005	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
A1D11_05005	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
A1D11_05005	PWY-7953	A1D11_05005
A1D11_05025	PWY-1269	CMP-3-deoxy-D-<I>manno</I>-octulosonate biosynthesis I
A1D11_05025	PWY-3461	L-tyrosine biosynthesis II
A1D11_05025	PWY-3462	L-phenylalanine biosynthesis II
A1D11_05025	PWY-6120	L-tyrosine biosynthesis III
A1D11_05025	PWY-6164	3-dehydroquinate biosynthesis I
A1D11_05025	PWY-6627	salinosporamide A biosynthesis
A1D11_05025	PWY-7626	bacilysin biosynthesis
A1D11_05025	PWY-7674	CMP-8-amino-3,8-dideoxy-D-<I>manno</I>-octulosonate biosynthesis
A1D11_05170	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
A1D11_05195	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
A1D11_05195	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
A1D11_05195	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
A1D11_05230	PWY-5482	pyruvate fermentation to acetate II
A1D11_05230	PWY-5485	pyruvate fermentation to acetate IV
A1D11_05230	PWY-5497	purine nucleobases degradation II (anaerobic)
A1D11_05240	PWY-4983	L-citrulline-nitric oxide cycle
A1D11_05240	PWY-4984	urea cycle
A1D11_05240	PWY-5	canavanine biosynthesis
A1D11_05240	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
A1D11_05240	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
A1D11_05245	PWY-4983	L-citrulline-nitric oxide cycle
A1D11_05245	PWY-4984	urea cycle
A1D11_05245	PWY-5	canavanine biosynthesis
A1D11_05245	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
A1D11_05245	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
A1D11_05260	PWY-1281	sulfoacetaldehyde degradation I
A1D11_05260	PWY-5482	pyruvate fermentation to acetate II
A1D11_05260	PWY-5485	pyruvate fermentation to acetate IV
A1D11_05260	PWY-5497	purine nucleobases degradation II (anaerobic)
A1D11_05260	PWY-6637	sulfolactate degradation II
A1D11_05270	PWY-7805	A1D11_05270
A1D11_05270	PWY-7807	A1D11_05270
A1D11_05300	PWY-4381	fatty acid biosynthesis initiation I
A1D11_05300	PWY-5743	3-hydroxypropanoate cycle
A1D11_05300	PWY-5744	glyoxylate assimilation
A1D11_05300	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
A1D11_05300	PWY-6722	candicidin biosynthesis
A1D11_05305	PWY-4381	fatty acid biosynthesis initiation I
A1D11_05305	PWY-5743	3-hydroxypropanoate cycle
A1D11_05305	PWY-5744	glyoxylate assimilation
A1D11_05305	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
A1D11_05305	PWY-6722	candicidin biosynthesis
A1D11_05310	PWY-1042	glycolysis IV (plant cytosol)
A1D11_05310	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
A1D11_05310	PWY-5484	glycolysis II (from fructose 6-phosphate)
A1D11_05310	PWY-7385	1,3-propanediol biosynthesis (engineered)
A1D11_05315	PWY-1042	glycolysis IV (plant cytosol)
A1D11_05315	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
A1D11_05315	PWY-5484	glycolysis II (from fructose 6-phosphate)
A1D11_05315	PWY-5723	Rubisco shunt
A1D11_05315	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A1D11_05315	PWY-6886	1-butanol autotrophic biosynthesis
A1D11_05315	PWY-6901	superpathway of glucose and xylose degradation
A1D11_05315	PWY-7003	glycerol degradation to butanol
A1D11_05315	PWY-7218	photosynthetic 3-hydroxybutanoate biosynthesis (engineered)
A1D11_05315	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
A1D11_05340	PWY-5913	TCA cycle VI (obligate autotrophs)
A1D11_05340	PWY-6549	L-glutamine biosynthesis III
A1D11_05340	PWY-6728	methylaspartate cycle
A1D11_05340	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
A1D11_05340	PWY-7124	ethylene biosynthesis V (engineered)
A1D11_05340	PWY-7254	TCA cycle VII (acetate-producers)
A1D11_05340	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
A1D11_05345	PWY-1622	formaldehyde assimilation I (serine pathway)
A1D11_05345	PWY-5392	reductive TCA cycle II
A1D11_05345	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
A1D11_05345	PWY-5690	TCA cycle II (plants and fungi)
A1D11_05345	PWY-5913	TCA cycle VI (obligate autotrophs)
A1D11_05345	PWY-6728	methylaspartate cycle
A1D11_05345	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
A1D11_05345	PWY-7115	C4 photosynthetic carbon assimilation cycle, NAD-ME type
A1D11_05345	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
A1D11_05375	PWY-7851	A1D11_05375
A1D11_05395	PWY-1042	glycolysis IV (plant cytosol)
A1D11_05395	PWY-5484	glycolysis II (from fructose 6-phosphate)
A1D11_05395	PWY-6901	superpathway of glucose and xylose degradation
A1D11_05395	PWY-7003	glycerol degradation to butanol
A1D11_05400	PWY-6834	spermidine biosynthesis III
A1D11_05510	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
A1D11_05530	PWY-4261	glycerol degradation I
A1D11_05535	PWY-6961	L-ascorbate degradation II (bacterial, aerobic)
A1D11_05545	PWY-6349	CDP-archaeol biosynthesis
A1D11_05685	PWY-2941	L-lysine biosynthesis II
A1D11_05685	PWY-2942	L-lysine biosynthesis III
A1D11_05685	PWY-5097	L-lysine biosynthesis VI
A1D11_05685	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
A1D11_05685	PWY-6559	spermidine biosynthesis II
A1D11_05685	PWY-6562	norspermidine biosynthesis
A1D11_05685	PWY-7153	grixazone biosynthesis
A1D11_05685	PWY-7977	A1D11_05685
A1D11_05700	PWY-3781	aerobic respiration I (cytochrome c)
A1D11_05700	PWY-4302	aerobic respiration III (alternative oxidase pathway)
A1D11_05700	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
A1D11_05700	PWY-5690	TCA cycle II (plants and fungi)
A1D11_05700	PWY-6728	methylaspartate cycle
A1D11_05700	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
A1D11_05700	PWY-7254	TCA cycle VII (acetate-producers)
A1D11_05700	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
A1D11_05705	PWY-3781	aerobic respiration I (cytochrome c)
A1D11_05705	PWY-4302	aerobic respiration III (alternative oxidase pathway)
A1D11_05705	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
A1D11_05705	PWY-5690	TCA cycle II (plants and fungi)
A1D11_05705	PWY-6728	methylaspartate cycle
A1D11_05705	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
A1D11_05705	PWY-7254	TCA cycle VII (acetate-producers)
A1D11_05705	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
A1D11_05725	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
A1D11_05725	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
A1D11_05765	PWY-5101	L-isoleucine biosynthesis II
A1D11_05765	PWY-5103	L-isoleucine biosynthesis III
A1D11_05765	PWY-5104	L-isoleucine biosynthesis IV
A1D11_05765	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
A1D11_05765	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
A1D11_05765	PWY-6389	(<i>S</i>)-acetoin biosynthesis
A1D11_05765	PWY-7111	pyruvate fermentation to isobutanol (engineered)
A1D11_05770	PWY-5101	L-isoleucine biosynthesis II
A1D11_05770	PWY-5103	L-isoleucine biosynthesis III
A1D11_05770	PWY-5104	L-isoleucine biosynthesis IV
A1D11_05770	PWY-5938	(<i>R</i>)-acetoin biosynthesis I
A1D11_05770	PWY-5939	(<i>R</i>)-acetoin biosynthesis II
A1D11_05770	PWY-6389	(<i>S</i>)-acetoin biosynthesis
A1D11_05770	PWY-7111	pyruvate fermentation to isobutanol (engineered)
A1D11_05775	PWY-5103	L-isoleucine biosynthesis III
A1D11_05775	PWY-7111	pyruvate fermentation to isobutanol (engineered)
A1D11_05780	PWY-6871	3-methylbutanol biosynthesis
A1D11_05785	PWY-7396	butanol and isobutanol biosynthesis (engineered)
A1D11_05835	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
A1D11_05845	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
A1D11_05845	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
A1D11_05850	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
A1D11_05850	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
A1D11_05855	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
A1D11_05855	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
A1D11_05860	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
A1D11_05885	PWY-2161	folate polyglutamylation
A1D11_05975	PWY-7432	L-phenylalanine biosynthesis III (cytosolic, plants)
A1D11_05985	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
A1D11_05990	PWY-5316	nicotine biosynthesis
A1D11_05990	PWY-7342	superpathway of nicotine biosynthesis
A1D11_05995	PWY-5316	nicotine biosynthesis
A1D11_05995	PWY-5381	pyridine nucleotide cycling (plants)
A1D11_05995	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
A1D11_05995	PWY-7342	superpathway of nicotine biosynthesis
A1D11_06000	PWY-5316	nicotine biosynthesis
A1D11_06000	PWY-7342	superpathway of nicotine biosynthesis
A1D11_06045	PWY-6855	chitin degradation I (archaea)
A1D11_06045	PWY-6902	chitin degradation II
A1D11_06045	PWY-7822	A1D11_06045
A1D11_06050	PWY-6855	chitin degradation I (archaea)
A1D11_06050	PWY-6902	chitin degradation II
A1D11_06050	PWY-7822	A1D11_06050
A1D11_06100	PWY-6700	queuosine biosynthesis
A1D11_06105	PWY-6700	queuosine biosynthesis
A1D11_06150	PWY-7805	A1D11_06150
A1D11_06150	PWY-7807	A1D11_06150
A1D11_06155	PWY-6605	adenine and adenosine salvage II
A1D11_06155	PWY-6610	adenine and adenosine salvage IV
A1D11_06155	PWY-7805	A1D11_06155
A1D11_06155	PWY-7807	A1D11_06155
A1D11_06170	PWY-7883	A1D11_06170
A1D11_06205	PWY-7250	[2Fe-2S] iron-sulfur cluster biosynthesis
A1D11_06210	PWY-7887	A1D11_06210
A1D11_06210	PWY-7892	A1D11_06210
A1D11_06300	PWY-7193	pyrimidine ribonucleosides salvage I
A1D11_06330	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
A1D11_06330	PWY-6153	autoinducer AI-2 biosynthesis I
A1D11_06330	PWY-6154	autoinducer AI-2 biosynthesis II (<i>Vibrio</i>)
A1D11_06355	PWY-1881	formate oxidation to CO<sub>2</sub>
A1D11_06355	PWY-5497	purine nucleobases degradation II (anaerobic)
A1D11_06355	PWY-6696	oxalate degradation III
A1D11_06355	PWY-7985	A1D11_06355
A1D11_06380	PWY-5451	acetone degradation I (to methylglyoxal)
A1D11_06380	PWY-5665	vanillin biosynthesis I
A1D11_06380	PWY-6398	melatonin degradation I
A1D11_06380	PWY-6992	1,5-anhydrofructose degradation
A1D11_06380	PWY-7466	acetone degradation III (to propane-1,2-diol)
A1D11_06380	PWY-7826	A1D11_06380
A1D11_06415	PWY-6654	phosphopantothenate biosynthesis III
A1D11_06420	PWY-5451	acetone degradation I (to methylglyoxal)
A1D11_06420	PWY-6588	pyruvate fermentation to acetone
A1D11_06420	PWY-6876	isopropanol biosynthesis
A1D11_06420	PWY-7466	acetone degradation III (to propane-1,2-diol)
A1D11_06515	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
A1D11_06525	PWY-5381	pyridine nucleotide cycling (plants)
A1D11_06525	PWY-5653	NAD biosynthesis from 2-amino-3-carboxymuconate semialdehyde
A1D11_06525	PWY-7761	A1D11_06525
A1D11_06545	PWY-3341	L-proline biosynthesis III
A1D11_06545	PWY-4981	L-proline biosynthesis II (from arginine)
A1D11_06545	PWY-6344	L-ornithine degradation II (Stickland reaction)
A1D11_06555	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
A1D11_06690	PWY-7039	phosphatidate metabolism, as a signaling molecule
A1D11_06690	PWY-7817	A1D11_06690
A1D11_06695	PWY-6556	pyrimidine ribonucleosides salvage II
A1D11_06695	PWY-7181	pyrimidine deoxyribonucleosides degradation
A1D11_06695	PWY-7193	pyrimidine ribonucleosides salvage I
A1D11_06695	PWY-7199	pyrimidine deoxyribonucleosides salvage
A1D11_06760	PWY-7560	methylerythritol phosphate pathway II
A1D11_06825	PWY-6854	ethylene biosynthesis III (microbes)
A1D11_06900	PWY-2722	trehalose degradation IV
A1D11_06900	PWY-2723	trehalose degradation V
A1D11_06900	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
A1D11_06900	PWY-5661	GDP-glucose biosynthesis
A1D11_06900	PWY-621	sucrose degradation III (sucrose invertase)
A1D11_06900	PWY-7238	sucrose biosynthesis II
A1D11_06900	PWY-7385	1,3-propanediol biosynthesis (engineered)
A1D11_07060	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
A1D11_07060	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
A1D11_07090	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
A1D11_07090	PWY-6416	quinate degradation II
A1D11_07090	PWY-6707	gallate biosynthesis
A1D11_07095	PWY-7799	A1D11_07095
A1D11_07095	PWY-7800	A1D11_07095
A1D11_07170	PWY-1722	formate reduction to 5,10-methylenetetrahydrofolate
A1D11_07170	PWY-2201	folate transformations I
A1D11_07170	PWY-3841	folate transformations II
A1D11_07170	PWY-5030	L-histidine degradation III
A1D11_07170	PWY-5497	purine nucleobases degradation II (anaerobic)
A1D11_07170	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
A1D11_07170	PWY-7909	A1D11_07170
A1D11_07190	PWY-6891	thiazole biosynthesis II (Bacillus)
A1D11_07190	PWY-6892	thiazole biosynthesis I (E. coli)
A1D11_07190	PWY-7560	methylerythritol phosphate pathway II
A1D11_07250	PWY-1361	benzoyl-CoA degradation I (aerobic)
A1D11_07250	PWY-5109	2-methylbutanoate biosynthesis
A1D11_07250	PWY-5136	fatty acid &beta;-oxidation II (peroxisome)
A1D11_07250	PWY-5138	unsaturated, even numbered fatty acid &beta;-oxidation
A1D11_07250	PWY-5177	glutaryl-CoA degradation
A1D11_07250	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
A1D11_07250	PWY-6435	4-hydroxybenzoate biosynthesis V
A1D11_07250	PWY-6583	pyruvate fermentation to butanol I
A1D11_07250	PWY-6863	pyruvate fermentation to hexanol
A1D11_07250	PWY-6883	pyruvate fermentation to butanol II
A1D11_07250	PWY-6944	androstenedione degradation
A1D11_07250	PWY-6945	cholesterol degradation to androstenedione I (cholesterol oxidase)
A1D11_07250	PWY-6946	cholesterol degradation to androstenedione II (cholesterol dehydrogenase)
A1D11_07250	PWY-7007	methyl ketone biosynthesis
A1D11_07250	PWY-7046	4-coumarate degradation (anaerobic)
A1D11_07250	PWY-7094	fatty acid salvage
A1D11_07250	PWY-7216	(R)- and (S)-3-hydroxybutanoate biosynthesis
A1D11_07250	PWY-735	jasmonic acid biosynthesis
A1D11_07250	PWY-7401	crotonate fermentation (to acetate and cyclohexane carboxylate)
A1D11_07250	PWY-7606	docosahexaenoate biosynthesis III (mammals)
A1D11_07250	PWY-7654	(8<i>E</i>,10<i>E</i>)-dodeca-8,10-dienol biosynthesis
A1D11_07250	PWY-7656	<i>Spodoptera littoralis</i> pheromone biosynthesis
A1D11_07250	PWY-7726	A1D11_07250
A1D11_07250	PWY-7778	A1D11_07250
A1D11_07250	PWY-7779	A1D11_07250
A1D11_07270	PWY-5747	2-methylcitrate cycle II
A1D11_07285	PWY-1281	sulfoacetaldehyde degradation I
A1D11_07285	PWY-5482	pyruvate fermentation to acetate II
A1D11_07285	PWY-5485	pyruvate fermentation to acetate IV
A1D11_07285	PWY-5497	purine nucleobases degradation II (anaerobic)
A1D11_07285	PWY-6637	sulfolactate degradation II
A1D11_07295	PWY-5482	pyruvate fermentation to acetate II
A1D11_07295	PWY-5485	pyruvate fermentation to acetate IV
A1D11_07295	PWY-5497	purine nucleobases degradation II (anaerobic)
A1D11_07300	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
A1D11_07300	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
A1D11_07360	PWY-5741	ethylmalonyl-CoA pathway
A1D11_07360	PWY-5743	3-hydroxypropanoate cycle
A1D11_07360	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
A1D11_07360	PWY-6728	methylaspartate cycle
A1D11_07360	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
A1D11_07360	PWY-7854	A1D11_07360
A1D11_07365	PWY-4381	fatty acid biosynthesis initiation I
A1D11_07365	PWY-5743	3-hydroxypropanoate cycle
A1D11_07365	PWY-5744	glyoxylate assimilation
A1D11_07365	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
A1D11_07365	PWY-6722	candicidin biosynthesis
A1D11_07375	PWY-5451	acetone degradation I (to methylglyoxal)
A1D11_07375	PWY-6588	pyruvate fermentation to acetone
A1D11_07375	PWY-6876	isopropanol biosynthesis
A1D11_07375	PWY-7466	acetone degradation III (to propane-1,2-diol)
A1D11_07400	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
A1D11_07430	PWY-3341	L-proline biosynthesis III
A1D11_07430	PWY-4981	L-proline biosynthesis II (from arginine)
A1D11_07430	PWY-6344	L-ornithine degradation II (Stickland reaction)
A1D11_07450	PWY-3961	phosphopantothenate biosynthesis II
A1D11_07550	PWY-5392	reductive TCA cycle II
A1D11_07550	PWY-561	superpathway of glyoxylate cycle and fatty acid degradation
A1D11_07550	PWY-5690	TCA cycle II (plants and fungi)
A1D11_07550	PWY-5913	TCA cycle VI (obligate autotrophs)
A1D11_07550	PWY-6728	methylaspartate cycle
A1D11_07550	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
A1D11_07550	PWY-7254	TCA cycle VII (acetate-producers)
A1D11_07550	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
A1D11_07590	PWY-7180	2'-deoxy-&alpha;-D-ribose 1-phosphate degradation
A1D11_07595	PWY-4202	arsenate detoxification I (glutaredoxin)
A1D11_07595	PWY-5532	adenosine nucleotides degradation IV
A1D11_07595	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
A1D11_07595	PWY-6608	guanosine nucleotides degradation III
A1D11_07595	PWY-6609	adenine and adenosine salvage III
A1D11_07595	PWY-6611	adenine and adenosine salvage V
A1D11_07595	PWY-6620	guanine and guanosine salvage
A1D11_07595	PWY-6627	salinosporamide A biosynthesis
A1D11_07595	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
A1D11_07595	PWY-7179	purine deoxyribonucleosides degradation I
A1D11_07595	PWY-7179-1	purine deoxyribonucleosides degradation
A1D11_07600	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
A1D11_07600	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
A1D11_07655	PWY-2941	L-lysine biosynthesis II
A1D11_07655	PWY-2942	L-lysine biosynthesis III
A1D11_07655	PWY-5097	L-lysine biosynthesis VI
A1D11_07900	PWY-7199	pyrimidine deoxyribonucleosides salvage
A1D11_08085	PWY-7991	A1D11_08085
A1D11_08090	PWY-6167	flavin biosynthesis II (archaea)
A1D11_08090	PWY-6168	flavin biosynthesis III (fungi)
A1D11_08090	PWY-7980	A1D11_08090
A1D11_08095	PWY-6167	flavin biosynthesis II (archaea)
A1D11_08095	PWY-6168	flavin biosynthesis III (fungi)
A1D11_08095	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
A1D11_08095	PWY-7991	A1D11_08095
A1D11_08100	PWY-6167	flavin biosynthesis II (archaea)
A1D11_08100	PWY-6168	flavin biosynthesis III (fungi)
A1D11_08135	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
A1D11_08135	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
A1D11_08190	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
A1D11_08190	PWY-6416	quinate degradation II
A1D11_08190	PWY-6707	gallate biosynthesis
A1D11_08275	PWY-7205	CMP phosphorylation
A1D11_08285	PWY-5123	<i>trans, trans</i>-farnesyl diphosphate biosynthesis
A1D11_08285	PWY-6174	mevalonate pathway II (archaea)
A1D11_08285	PWY-6383	mono-<i>trans</i>, poly-<i>cis</i> decaprenyl phosphate biosynthesis
A1D11_08285	PWY-6859	<i>all-trans</i>-farnesol biosynthesis
A1D11_08285	PWY-7102	bisabolene biosynthesis
A1D11_08285	PWY-7391	isoprene biosynthesis II (engineered)
A1D11_08285	PWY-7524	mevalonate pathway III (archaea)
A1D11_08285	PWY-7560	methylerythritol phosphate pathway II
A1D11_08285	PWY-922	mevalonate pathway I
A1D11_08310	PWY-5667	CDP-diacylglycerol biosynthesis I
A1D11_08310	PWY-5981	CDP-diacylglycerol biosynthesis III
A1D11_08310	PWY-7902	A1D11_08310
A1D11_08335	PWY-5663	tetrahydrobiopterin biosynthesis I
A1D11_08335	PWY-5664	tetrahydrobiopterin biosynthesis II
A1D11_08335	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
A1D11_08335	PWY-6703	preQ<sub>0</sub> biosynthesis
A1D11_08335	PWY-6983	tetrahydrobiopterin biosynthesis III
A1D11_08335	PWY-7442	drosopterin and aurodrosopterin biosynthesis
A1D11_08335	PWY-7852	A1D11_08335
A1D11_08345	PWY-5807	heptaprenyl diphosphate biosynthesis
A1D11_08350	PWY-5839	menaquinol-7 biosynthesis
A1D11_08350	PWY-5844	menaquinol-9 biosynthesis
A1D11_08350	PWY-5849	menaquinol-6 biosynthesis
A1D11_08350	PWY-5890	menaquinol-10 biosynthesis
A1D11_08350	PWY-5891	menaquinol-11 biosynthesis
A1D11_08350	PWY-5892	menaquinol-12 biosynthesis
A1D11_08350	PWY-5895	menaquinol-13 biosynthesis
A1D11_08355	PWY-5807	heptaprenyl diphosphate biosynthesis
A1D11_08360	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
A1D11_08360	PWY-7176	UTP and CTP <i>de novo</i> biosynthesis
A1D11_08360	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
A1D11_08360	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
A1D11_08360	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
A1D11_08360	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
A1D11_08360	PWY-7205	CMP phosphorylation
A1D11_08360	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
A1D11_08360	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
A1D11_08360	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
A1D11_08360	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
A1D11_08360	PWY-7224	purine deoxyribonucleosides salvage
A1D11_08360	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
A1D11_08360	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
A1D11_08370	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
A1D11_08375	PWY-6164	3-dehydroquinate biosynthesis I
A1D11_08380	PWY-3461	L-tyrosine biosynthesis II
A1D11_08380	PWY-3462	L-phenylalanine biosynthesis II
A1D11_08380	PWY-6120	L-tyrosine biosynthesis III
A1D11_08380	PWY-6627	salinosporamide A biosynthesis
A1D11_08380	PWY-7626	bacilysin biosynthesis
A1D11_08385	PWY-5958	acridone alkaloid biosynthesis
A1D11_08385	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
A1D11_08385	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
A1D11_08420	PWY-7303	3-dimethylallyl-4-hydroxybenzoate biosynthesis
A1D11_08425	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
A1D11_08445	PWY-101	photosynthesis light reactions
A1D11_08470	PWY-6698	oxalate degradation V
A1D11_08485	PWY-2941	L-lysine biosynthesis II
A1D11_08485	PWY-2942	L-lysine biosynthesis III
A1D11_08485	PWY-5097	L-lysine biosynthesis VI
A1D11_08510	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
A1D11_08510	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
A1D11_08520	PWY-6654	phosphopantothenate biosynthesis III
A1D11_08530	PWY-5155	&beta;-alanine biosynthesis III
A1D11_08570	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
A1D11_08570	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
A1D11_08570	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
A1D11_08570	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
A1D11_08660	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
A1D11_08660	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
A1D11_08665	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
A1D11_08680	PWY-2221	Entner-Doudoroff pathway III (semi-phosphorylative)
A1D11_08680	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
A1D11_08680	PWY-7242	D-fructuronate degradation
A1D11_08680	PWY-7310	D-glucosaminate degradation
A1D11_08680	PWY-7562	3,6-anhydro-&alpha;-L-galactopyranose degradation
A1D11_08770	PWY-7817	A1D11_08770
A1D11_08795	PWY-5101	L-isoleucine biosynthesis II
A1D11_08795	PWY-5103	L-isoleucine biosynthesis III
A1D11_08795	PWY-5104	L-isoleucine biosynthesis IV
A1D11_08795	PWY-7111	pyruvate fermentation to isobutanol (engineered)
A1D11_08820	PWY-3841	folate transformations II
A1D11_08820	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
A1D11_08820	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
A1D11_08820	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
A1D11_08820	PWY-7199	pyrimidine deoxyribonucleosides salvage
A1D11_08820	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
A1D11_08825	PWY-3841	folate transformations II
A1D11_08825	PWY-6614	tetrahydrofolate biosynthesis
A1D11_08930	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
A1D11_08935	PWY-4702	phytate degradation I
A1D11_09025	PWY-4202	arsenate detoxification I (glutaredoxin)
A1D11_09025	PWY-5532	adenosine nucleotides degradation IV
A1D11_09025	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
A1D11_09025	PWY-6608	guanosine nucleotides degradation III
A1D11_09025	PWY-6609	adenine and adenosine salvage III
A1D11_09025	PWY-6611	adenine and adenosine salvage V
A1D11_09025	PWY-6620	guanine and guanosine salvage
A1D11_09025	PWY-6627	salinosporamide A biosynthesis
A1D11_09025	PWY-6644	fluoroacetate and fluorothreonine biosynthesis
A1D11_09025	PWY-7179	purine deoxyribonucleosides degradation I
A1D11_09025	PWY-7179-1	purine deoxyribonucleosides degradation
A1D11_09155	PWY-6854	ethylene biosynthesis III (microbes)
A1D11_09170	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
A1D11_09175	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
A1D11_09190	PWY-6854	ethylene biosynthesis III (microbes)
A1D11_09345	PWY-4261	glycerol degradation I
A1D11_09990	PWY-4381	fatty acid biosynthesis initiation I
A1D11_09990	PWY-6799	fatty acid biosynthesis (plant mitochondria)
A1D11_09990	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
A1D11_10020	PWY-3341	L-proline biosynthesis III
A1D11_10020	PWY-4981	L-proline biosynthesis II (from arginine)
A1D11_10020	PWY-6344	L-ornithine degradation II (Stickland reaction)
A1D11_10025	PWY-3341	L-proline biosynthesis III
A1D11_10025	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
A1D11_10055	PWY-4041	&gamma;-glutamyl cycle
A1D11_10055	PWY-4061	glutathione-mediated detoxification I
A1D11_10055	PWY-5826	hypoglycin biosynthesis
A1D11_10055	PWY-6842	glutathione-mediated detoxification II
A1D11_10055	PWY-7112	4-hydroxy-2-nonenal detoxification
A1D11_10055	PWY-7559	glutathione degradation (DUG pathway - yeast)
A1D11_10115	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
A1D11_10115	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
A1D11_10190	PWY-4381	fatty acid biosynthesis initiation I
A1D11_10190	PWY-5743	3-hydroxypropanoate cycle
A1D11_10190	PWY-5744	glyoxylate assimilation
A1D11_10190	PWY-5789	3-hydroxypropanoate/4-hydroxybutanate cycle
A1D11_10190	PWY-6722	candicidin biosynthesis
A1D11_10350	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
A1D11_10350	PWY-5723	Rubisco shunt
A1D11_10350	PWY-6891	thiazole biosynthesis II (Bacillus)
A1D11_10350	PWY-6892	thiazole biosynthesis I (E. coli)
A1D11_10350	PWY-6901	superpathway of glucose and xylose degradation
A1D11_10350	PWY-7560	methylerythritol phosphate pathway II
A1D11_10530	PWY-0	putrescine degradation III
A1D11_10530	PWY-6117	spermine and spermidine degradation I
A1D11_10530	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
A1D11_10560	PWY-5331	taurine biosynthesis
A1D11_10750	PWY-381	nitrate reduction II (assimilatory)
A1D11_10750	PWY-5675	nitrate reduction V (assimilatory)
A1D11_10750	PWY-6549	L-glutamine biosynthesis III
A1D11_10750	PWY-6963	ammonia assimilation cycle I
A1D11_10750	PWY-6964	ammonia assimilation cycle II
A1D11_10785	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
A1D11_10785	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
A1D11_10785	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
A1D11_10785	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
A1D11_10785	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
A1D11_10785	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
A1D11_10785	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
A1D11_10785	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
A1D11_10790	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
A1D11_10790	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
A1D11_10790	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
A1D11_10790	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
A1D11_10790	PWY-7220	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis II
A1D11_10790	PWY-7222	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis II
A1D11_10790	PWY-7226	guanosine deoxyribonucleotides <i>de novo</i> biosynthesis I
A1D11_10790	PWY-7227	adenosine deoxyribonucleotides <i>de novo</i> biosynthesis
A1D11_10815	PWY-2781	<i>cis</i>-zeatin biosynthesis
A1D11_10910	PWY-6174	mevalonate pathway II (archaea)
A1D11_10910	PWY-7391	isoprene biosynthesis II (engineered)
A1D11_10910	PWY-7524	mevalonate pathway III (archaea)
A1D11_10910	PWY-7571	ferrichrome A biosynthesis
A1D11_10910	PWY-922	mevalonate pathway I
A1D11_10925	PWY-4381	fatty acid biosynthesis initiation I
A1D11_10925	PWY-6799	fatty acid biosynthesis (plant mitochondria)
A1D11_10925	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
A1D11_10935	PWY-4381	fatty acid biosynthesis initiation I
A1D11_10935	PWY-6799	fatty acid biosynthesis (plant mitochondria)
A1D11_10935	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
A1D11_10990	PWY-6519	8-amino-7-oxononanoate biosynthesis I
A1D11_10990	PWY-6578	8-amino-7-oxononanoate biosynthesis III
A1D11_10990	PWY-7147	8-amino-7-oxononanoate biosynthesis II
A1D11_10995	PWY-7378	aminopropanol phosphate biosynthesis II
A1D11_11030	PWY-5269	cardiolipin biosynthesis II
A1D11_11030	PWY-5668	cardiolipin biosynthesis I
A1D11_11030	PWY-7817	A1D11_11030
A1D11_11095	PWY-2941	L-lysine biosynthesis II
A1D11_11095	PWY-2942	L-lysine biosynthesis III
A1D11_11095	PWY-5097	L-lysine biosynthesis VI
A1D11_11100	PWY-2941	L-lysine biosynthesis II
A1D11_11100	PWY-2942	L-lysine biosynthesis III
A1D11_11100	PWY-5097	L-lysine biosynthesis VI
A1D11_11100	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
A1D11_11100	PWY-6559	spermidine biosynthesis II
A1D11_11100	PWY-6562	norspermidine biosynthesis
A1D11_11100	PWY-7153	grixazone biosynthesis
A1D11_11100	PWY-7977	A1D11_11100
A1D11_11105	PWY-2941	L-lysine biosynthesis II
A1D11_11105	PWY-2942	L-lysine biosynthesis III
A1D11_11105	PWY-5097	L-lysine biosynthesis VI
A1D11_11105	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
A1D11_11105	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
A1D11_11105	PWY-6559	spermidine biosynthesis II
A1D11_11105	PWY-6562	norspermidine biosynthesis
A1D11_11105	PWY-7153	grixazone biosynthesis
A1D11_11105	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
A1D11_11105	PWY-7977	A1D11_11105
A1D11_11145	PWY-5523	5,6-dimethylbenzimidazole biosynthesis
A1D11_11145	PWY-6167	flavin biosynthesis II (archaea)
A1D11_11145	PWY-6168	flavin biosynthesis III (fungi)
A1D11_11145	PWY-7863	A1D11_11145
A1D11_11205	PWY-7560	methylerythritol phosphate pathway II
A1D11_11210	PWY-5667	CDP-diacylglycerol biosynthesis I
A1D11_11210	PWY-5981	CDP-diacylglycerol biosynthesis III
A1D11_11210	PWY-7817	A1D11_11210
A1D11_11365	PWY-7980	A1D11_11365
A1D11_11435	PWY-5392	reductive TCA cycle II
A1D11_11435	PWY-5537	pyruvate fermentation to acetate V
A1D11_11435	PWY-5538	pyruvate fermentation to acetate VI
A1D11_11435	PWY-5690	TCA cycle II (plants and fungi)
A1D11_11435	PWY-5913	TCA cycle VI (obligate autotrophs)
A1D11_11435	PWY-6728	methylaspartate cycle
A1D11_11435	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
A1D11_11435	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
A1D11_11440	PWY-5392	reductive TCA cycle II
A1D11_11440	PWY-5537	pyruvate fermentation to acetate V
A1D11_11440	PWY-5538	pyruvate fermentation to acetate VI
A1D11_11440	PWY-5690	TCA cycle II (plants and fungi)
A1D11_11440	PWY-5913	TCA cycle VI (obligate autotrophs)
A1D11_11440	PWY-6728	methylaspartate cycle
A1D11_11440	PWY-6969	TCA cycle V (2-oxoglutarate:ferredoxin oxidoreductase)
A1D11_11440	PWY-7384	anaerobic energy metabolism (invertebrates, mitochondrial)
A1D11_11470	PWY-6829	tRNA methylation (yeast)
A1D11_11470	PWY-7285	methylwyosine biosynthesis
A1D11_11470	PWY-7286	7-(3-amino-3-carboxypropyl)-wyosine biosynthesis
A1D11_11525	PWY-5367	petroselinate biosynthesis
A1D11_11525	PWY-5971	palmitate biosynthesis II (bacteria and plants)
A1D11_11525	PWY-5973	<i>cis</i>-vaccenate biosynthesis
A1D11_11525	PWY-5989	stearate biosynthesis II (bacteria and plants)
A1D11_11525	PWY-5994	palmitate biosynthesis I (animals and fungi)
A1D11_11525	PWY-6113	superpathway of mycolate biosynthesis
A1D11_11525	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
A1D11_11525	PWY-6519	8-amino-7-oxononanoate biosynthesis I
A1D11_11525	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
A1D11_11525	PWY-7663	gondoate biosynthesis (anaerobic)
A1D11_11525	PWY-7664	oleate biosynthesis IV (anaerobic)
A1D11_11525	PWY-7858	A1D11_11525
A1D11_11525	PWYG-321	mycolate biosynthesis
A1D11_11530	PWY-4381	fatty acid biosynthesis initiation I
A1D11_11530	PWY-6799	fatty acid biosynthesis (plant mitochondria)
A1D11_11530	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
A1D11_11580	PWY-6898	thiamin salvage III
A1D11_11580	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
A1D11_11580	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
A1D11_11580	PWY-7356	thiamin salvage IV (yeast)
A1D11_11585	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
A1D11_11585	PWY-5723	Rubisco shunt
A1D11_11630	PWY-7851	A1D11_11630
A1D11_11640	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
A1D11_11665	PWY-5194	siroheme biosynthesis
A1D11_11665	PWY-5196	factor 430 biosynthesis
A1D11_11665	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
A1D11_11670	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
A1D11_11675	PWY-5194	siroheme biosynthesis
A1D11_11675	PWY-5196	factor 430 biosynthesis
A1D11_11675	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
A1D11_11680	PWY-5340	sulfate activation for sulfonation
A1D11_11685	PWY-5278	sulfite oxidation III
A1D11_11685	PWY-5340	sulfate activation for sulfonation
A1D11_11685	PWY-6683	sulfate reduction III (assimilatory)
A1D11_11685	PWY-6932	selenate reduction
A1D11_11700	PWY-5686	UMP biosynthesis
A1D11_11700	PWY-7790	A1D11_11700
A1D11_11700	PWY-7791	A1D11_11700
A1D11_11705	PWY-5686	UMP biosynthesis
A1D11_11705	PWY-7790	A1D11_11705
A1D11_11705	PWY-7791	A1D11_11705
A1D11_11720	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
A1D11_11720	PWY-5686	UMP biosynthesis
A1D11_11720	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
A1D11_11720	PWY-7790	A1D11_11720
A1D11_11720	PWY-7791	A1D11_11720
A1D11_11725	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
A1D11_11725	PWY-5686	UMP biosynthesis
A1D11_11725	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
A1D11_11725	PWY-7790	A1D11_11725
A1D11_11725	PWY-7791	A1D11_11725
A1D11_11730	PWY-5686	UMP biosynthesis
A1D11_11730	PWY-7790	A1D11_11730
A1D11_11730	PWY-7791	A1D11_11730
A1D11_11735	PWY-5686	UMP biosynthesis
A1D11_11735	PWY-7790	A1D11_11735
A1D11_11735	PWY-7791	A1D11_11735
A1D11_11745	PWY-7183	pyrimidine nucleobases salvage I
A1D11_11755	PWY-7884	A1D11_11755
A1D11_11790	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
A1D11_11865	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
A1D11_11865	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
A1D11_11865	PWY-7953	A1D11_11865
A1D11_11870	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
A1D11_11870	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
A1D11_11870	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
A1D11_11870	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
A1D11_11875	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
A1D11_11875	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
A1D11_11875	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
A1D11_11875	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
A1D11_11880	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
A1D11_11880	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
A1D11_11885	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
A1D11_11885	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
A1D11_11885	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
A1D11_11925	PWY-6654	phosphopantothenate biosynthesis III
A1D11_11970	PWY-7851	A1D11_11970
A1D11_12025	PWY-3781	aerobic respiration I (cytochrome c)
A1D11_12025	PWY-4521	arsenite oxidation I (respiratory)
A1D11_12025	PWY-6692	Fe(II) oxidation
A1D11_12025	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
A1D11_12035	PWY-3781	aerobic respiration I (cytochrome c)
A1D11_12035	PWY-4521	arsenite oxidation I (respiratory)
A1D11_12035	PWY-6692	Fe(II) oxidation
A1D11_12035	PWY-7279	aerobic respiration II (cytochrome c) (yeast)
A1D11_12055	PWY-5750	itaconate biosynthesis
A1D11_12055	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A1D11_12055	PWY-6146	<i>Methanobacterium thermoautotrophicum</i> biosynthetic metabolism
A1D11_12060	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
A1D11_12060	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
A1D11_12060	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
A1D11_12060	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
A1D11_12185	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
A1D11_12185	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
A1D11_12270	PWY-6654	phosphopantothenate biosynthesis III
A1D11_12340	PWY-6823	molybdenum cofactor biosynthesis
A1D11_12340	PWY-7887	A1D11_12340
A1D11_12350	PWY-6823	molybdenum cofactor biosynthesis
A1D11_12360	PWY-5964	guanylyl molybdenum cofactor biosynthesis
A1D11_12360	PWY-7639	bis(guanylyl molybdenum cofactor) biosynthesis
A1D11_12395	PWY-2941	L-lysine biosynthesis II
A1D11_12400	PWY-2941	L-lysine biosynthesis II
A1D11_12555	PWY-7799	A1D11_12555
A1D11_12555	PWY-7800	A1D11_12555
A1D11_12610	PWY-6700	queuosine biosynthesis
A1D11_12615	PWY-6703	preQ<sub>0</sub> biosynthesis
A1D11_12625	PWY-6703	preQ<sub>0</sub> biosynthesis
A1D11_12675	PWY-7511	protein ubiquitylation
A1D11_12680	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
A1D11_12680	PWY-5389	3-methylthiopropanoate biosynthesis
A1D11_12685	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
A1D11_12690	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
A1D11_12695	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
A1D11_12695	PWY-5532	adenosine nucleotides degradation IV
A1D11_12695	PWY-5723	Rubisco shunt
A1D11_12710	PWY-6754	<i>S</i>-methyl-5'-thioadenosine degradation I
A1D11_12715	PWY-4361	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation
A1D11_12715	PWY-7174	<i>S</i>-methyl-5-thio-&alpha;-D-ribose 1-phosphate degradation II
A1D11_12905	PWY-5041	<i>S</i>-adenosyl-L-methionine cycle II
A1D11_12905	PWY-6151	<i>S</i>-adenosyl-L-methionine cycle I
A1D11_12905	PWY-6936	seleno-amino acid biosynthesis
A1D11_12905	PWY-702	L-methionine biosynthesis II
A1D11_12955	PWY-3341	L-proline biosynthesis III
A1D11_12955	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
A1D11_12960	PWY-3341	L-proline biosynthesis III
A1D11_12960	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
A1D11_12965	PWY-2201	folate transformations I
A1D11_12965	PWY-5497	purine nucleobases degradation II (anaerobic)
A1D11_12965	PWY-7909	A1D11_12965
A1D11_13070	PWY-3341	L-proline biosynthesis III
A1D11_13070	PWY-4981	L-proline biosynthesis II (from arginine)
A1D11_13070	PWY-6344	L-ornithine degradation II (Stickland reaction)
A1D11_13345	PWY-6531	mannitol cycle
A1D11_13360	PWY-7247	&beta;-D-glucuronide and D-glucuronate degradation
A1D11_13360	PWY-7248	pectin degradation III
A1D11_13395	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
A1D11_13395	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
A1D11_13445	PWY-1881	formate oxidation to CO<sub>2</sub>
A1D11_13445	PWY-5497	purine nucleobases degradation II (anaerobic)
A1D11_13445	PWY-6696	oxalate degradation III
A1D11_13445	PWY-7985	A1D11_13445
A1D11_13640	PWY-5971	palmitate biosynthesis II (bacteria and plants)
A1D11_13640	PWY-5973	<i>cis</i>-vaccenate biosynthesis
A1D11_13640	PWY-5989	stearate biosynthesis II (bacteria and plants)
A1D11_13640	PWY-6113	superpathway of mycolate biosynthesis
A1D11_13640	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
A1D11_13640	PWY-6519	8-amino-7-oxononanoate biosynthesis I
A1D11_13640	PWY-7663	gondoate biosynthesis (anaerobic)
A1D11_13640	PWY-7664	oleate biosynthesis IV (anaerobic)
A1D11_13640	PWY-7858	A1D11_13640
A1D11_13640	PWYG-321	mycolate biosynthesis
A1D11_13645	PWY-6910	hydroxymethylpyrimidine salvage
A1D11_13645	PWY-7356	thiamin salvage IV (yeast)
A1D11_13645	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
A1D11_13655	PWY-6891	thiazole biosynthesis II (Bacillus)
A1D11_13655	PWY-6892	thiazole biosynthesis I (E. coli)
A1D11_13665	PWY-7396	butanol and isobutanol biosynthesis (engineered)
A1D11_13665	PWY-7806	A1D11_13665
A1D11_13670	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
A1D11_13670	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
A1D11_13670	PWY-6897	thiamin salvage II
A1D11_13670	PWY-6907	thiamin diphosphate biosynthesis III (Staphylococcus)
A1D11_13670	PWY-6908	thiamin diphosphate biosynthesis IV (eukaryotes)
A1D11_13670	PWY-7356	thiamin salvage IV (yeast)
A1D11_13670	PWY-7357	thiamin formation from pyrithiamine and oxythiamine (yeast)
A1D11_13675	PWY-6899	base-degraded thiamin salvage
A1D11_13675	PWY-7356	thiamin salvage IV (yeast)
A1D11_13695	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
A1D11_13695	PWY-7268	NAD/NADP-NADH/NADPH cytosolic interconversion (yeast)
A1D11_13695	PWY-7269	NAD/NADP-NADH/NADPH mitochondrial interconversion (yeast)
A1D11_13840	PWY-4381	fatty acid biosynthesis initiation I
A1D11_13880	PWY-4981	L-proline biosynthesis II (from arginine)
A1D11_13880	PWY-4984	urea cycle
A1D11_13880	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
A1D11_13885	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
A1D11_13885	PWY-5686	UMP biosynthesis
A1D11_13885	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
A1D11_13885	PWY-7790	A1D11_13885
A1D11_13885	PWY-7791	A1D11_13885
A1D11_13890	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
A1D11_13890	PWY-5686	UMP biosynthesis
A1D11_13890	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
A1D11_13890	PWY-7790	A1D11_13890
A1D11_13890	PWY-7791	A1D11_13890
A1D11_13900	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
A1D11_13900	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
A1D11_13905	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
A1D11_13910	PWY-5154	L-arginine biosynthesis III (via <i>N</i>-acetyl-L-citrulline)
A1D11_13910	PWY-7400	L-arginine biosynthesis IV (archaebacteria)
A1D11_13980	PWY-2201	folate transformations I
A1D11_13980	PWY-3841	folate transformations II
A1D11_14025	PWY-5278	sulfite oxidation III
A1D11_14025	PWY-5340	sulfate activation for sulfonation
A1D11_14025	PWY-6683	sulfate reduction III (assimilatory)
A1D11_14025	PWY-6932	selenate reduction
A1D11_14030	PWY-5340	sulfate activation for sulfonation
A1D11_14280	PWY-5642	2,4-dinitrotoluene degradation
A1D11_14355	PWY-6987	lipoate biosynthesis and incorporation III (Bacillus)
A1D11_14355	PWY-7382	lipoate biosynthesis and incorporation (pyruvate dehydrogenase and oxoglutarate dehydrogenase, yeast)
A1D11_14380	PWY-4381	fatty acid biosynthesis initiation I
A1D11_14395	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
A1D11_14405	PWY-5531	chlorophyllide <i>a</i> biosynthesis II (anaerobic)
A1D11_14405	PWY-7159	chlorophyllide <i>a</i> biosynthesis III (aerobic, light independent)
A1D11_14405	PWY-7766	A1D11_14405
A1D11_14410	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
A1D11_14410	PWY-6385	peptidoglycan biosynthesis III (mycobacteria)
A1D11_14410	PWY-6470	peptidoglycan biosynthesis V (&beta;-lactam resistance)
A1D11_14410	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
A1D11_14695	PWY-5667	CDP-diacylglycerol biosynthesis I
A1D11_14695	PWY-5981	CDP-diacylglycerol biosynthesis III
A1D11_14695	PWY-6453	stigma estolide biosynthesis
A1D11_14695	PWY-7411	superpathway of phosphatidate biosynthesis (yeast)
A1D11_14695	PWY-7417	phospholipid remodeling (phosphatidate, yeast)
A1D11_14695	PWY-7587	oleate biosynthesis III (cyanobacteria)
A1D11_14695	PWY-7589	palmitoleate biosynthesis III (cyanobacteria)
A1D11_14695	PWY-7782	A1D11_14695
A1D11_14725	PWY-6853	ethylene biosynthesis II (microbes)
A1D11_14780	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
A1D11_14780	PWY-5491	diethylphosphate degradation
A1D11_14830	PWY-6749	CMP-legionaminate biosynthesis I
A1D11_14835	PWY-4261	glycerol degradation I
A1D11_14835	PWY-6118	glycerol-3-phosphate shuttle
A1D11_14835	PWY-6952	glycerophosphodiester degradation
A1D11_14840	PWY-4261	glycerol degradation I
A1D11_15030	PWY-6700	queuosine biosynthesis
A1D11_15090	PWY-6890	4-amino-2-methyl-5-diphosphomethylpyrimidine biosynthesis
A1D11_15235	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
A1D11_15415	PWY-5386	methylglyoxal degradation I
A1D11_15490	PWY-5046	2-oxoisovalerate decarboxylation to isobutanoyl-CoA
A1D11_15490	PWY-5084	2-oxoglutarate decarboxylation to succinyl-CoA
A1D11_15610	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
A1D11_15610	PWY-6416	quinate degradation II
A1D11_15610	PWY-6707	gallate biosynthesis
A1D11_15615	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
A1D11_15680	PWY-7799	A1D11_15680
A1D11_15680	PWY-7800	A1D11_15680
A1D11_15905	PWY-5451	acetone degradation I (to methylglyoxal)
A1D11_15905	PWY-5665	vanillin biosynthesis I
A1D11_15905	PWY-6398	melatonin degradation I
A1D11_15905	PWY-6992	1,5-anhydrofructose degradation
A1D11_15905	PWY-7466	acetone degradation III (to propane-1,2-diol)
A1D11_15905	PWY-7826	A1D11_15905
A1D11_15970	PWY-6807	xyloglucan degradation II (exoglucanase)
A1D11_16150	PWY-5971	palmitate biosynthesis II (bacteria and plants)
A1D11_16150	PWY-5973	<i>cis</i>-vaccenate biosynthesis
A1D11_16150	PWY-5989	stearate biosynthesis II (bacteria and plants)
A1D11_16150	PWY-5994	palmitate biosynthesis I (animals and fungi)
A1D11_16150	PWY-6113	superpathway of mycolate biosynthesis
A1D11_16150	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
A1D11_16150	PWY-6519	8-amino-7-oxononanoate biosynthesis I
A1D11_16150	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
A1D11_16150	PWY-7663	gondoate biosynthesis (anaerobic)
A1D11_16150	PWY-7664	oleate biosynthesis IV (anaerobic)
A1D11_16150	PWY-7858	A1D11_16150
A1D11_16150	PWYG-321	mycolate biosynthesis
A1D11_16195	PWY-5921	glutaminyl-tRNA<sup>gln</sup> biosynthesis via transamidation
A1D11_16255	PWY-6610	adenine and adenosine salvage IV
A1D11_16275	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
A1D11_16275	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
A1D11_16275	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
A1D11_16280	PWY-6123	inosine-5'-phosphate biosynthesis I
A1D11_16280	PWY-6124	inosine-5'-phosphate biosynthesis II
A1D11_16280	PWY-7234	inosine-5'-phosphate biosynthesis III
A1D11_16285	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
A1D11_16285	PWY-6613	tetrahydrofolate salvage from 5,10-methenyltetrahydrofolate
A1D11_16290	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
A1D11_16290	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
A1D11_16290	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
A1D11_16295	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
A1D11_16295	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
A1D11_16295	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
A1D11_16295	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
A1D11_16300	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
A1D11_16300	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
A1D11_16300	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
A1D11_16305	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
A1D11_16305	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
A1D11_16305	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
A1D11_16310	PWY-6121	5-aminoimidazole ribonucleotide biosynthesis I
A1D11_16310	PWY-6122	5-aminoimidazole ribonucleotide biosynthesis II
A1D11_16310	PWY-6277	superpathway of 5-aminoimidazole ribonucleotide biosynthesis
A1D11_16315	PWY-6123	inosine-5'-phosphate biosynthesis I
A1D11_16315	PWY-6124	inosine-5'-phosphate biosynthesis II
A1D11_16315	PWY-7234	inosine-5'-phosphate biosynthesis III
A1D11_16320	PWY-6123	inosine-5'-phosphate biosynthesis I
A1D11_16320	PWY-6124	inosine-5'-phosphate biosynthesis II
A1D11_16320	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
A1D11_16320	PWY-7234	inosine-5'-phosphate biosynthesis III
A1D11_16330	PWY-6123	inosine-5'-phosphate biosynthesis I
A1D11_16330	PWY-7234	inosine-5'-phosphate biosynthesis III
A1D11_16365	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
A1D11_16560	PWY-6823	molybdenum cofactor biosynthesis
A1D11_16590	PWY-6893	thiamin diphosphate biosynthesis II (Bacillus)
A1D11_16590	PWY-6894	thiamin diphosphate biosynthesis I (E. coli)
A1D11_16590	PWY-6896	thiamin salvage I
A1D11_16590	PWY-6897	thiamin salvage II
A1D11_16705	PWY-5083	NAD/NADH phosphorylation and dephosphorylation
A1D11_16705	PWY-5491	diethylphosphate degradation
A1D11_16730	PWY-6349	CDP-archaeol biosynthesis
A1D11_16800	PWY-3861	mannitol degradation II
A1D11_16800	PWY-3881	mannitol biosynthesis
A1D11_16800	PWY-5659	GDP-mannose biosynthesis
A1D11_16800	PWY-6992	1,5-anhydrofructose degradation
A1D11_16800	PWY-7456	mannan degradation
A1D11_16800	PWY-7586	&beta;-1,4-D-mannosyl-<i>N</i>-acetyl-D-glucosamine degradation
A1D11_16800	PWY-882	L-ascorbate biosynthesis I (L-galactose pathway)
A1D11_17185	PWY-7383	anaerobic energy metabolism (invertebrates, cytosol)
A1D11_17195	PWY-6012	acyl carrier protein metabolism I
A1D11_17195	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
A1D11_17195	PWY-6289	petrobactin biosynthesis
A1D11_17225	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
A1D11_17225	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
A1D11_17225	PWY-7953	A1D11_17225
A1D11_17230	PWY-6386	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis II (lysine-containing)
A1D11_17230	PWY-6387	UDP-<i>N</i>-acetylmuramoyl-pentapeptide biosynthesis I (<i>meso</i>-diaminopimelate containing)
A1D11_17230	PWY-7953	A1D11_17230
A1D11_17480	PWY-4041	&gamma;-glutamyl cycle
A1D11_17480	PWY-7942	A1D11_17480
A1D11_17495	PWY-4041	&gamma;-glutamyl cycle
A1D11_17495	PWY-7942	A1D11_17495
A1D11_17510	PWY-5971	palmitate biosynthesis II (bacteria and plants)
A1D11_17510	PWY-5973	<i>cis</i>-vaccenate biosynthesis
A1D11_17510	PWY-5989	stearate biosynthesis II (bacteria and plants)
A1D11_17510	PWY-5994	palmitate biosynthesis I (animals and fungi)
A1D11_17510	PWY-6113	superpathway of mycolate biosynthesis
A1D11_17510	PWY-6282	palmitoleate biosynthesis I (from (5Z)-dodec-5-enoate)
A1D11_17510	PWY-6519	8-amino-7-oxononanoate biosynthesis I
A1D11_17510	PWY-7388	octanoyl-[acyl-carrier protein] biosynthesis (mitochondria, yeast)
A1D11_17510	PWY-7663	gondoate biosynthesis (anaerobic)
A1D11_17510	PWY-7664	oleate biosynthesis IV (anaerobic)
A1D11_17510	PWY-7858	A1D11_17510
A1D11_17510	PWYG-321	mycolate biosynthesis
A1D11_17520	PWY-6531	mannitol cycle
A1D11_17630	PWY-2941	L-lysine biosynthesis II
A1D11_17630	PWY-2942	L-lysine biosynthesis III
A1D11_17630	PWY-5097	L-lysine biosynthesis VI
A1D11_17630	PWY-6160	3-dehydroquinate biosynthesis II (archaea)
A1D11_17630	PWY-6559	spermidine biosynthesis II
A1D11_17630	PWY-6562	norspermidine biosynthesis
A1D11_17630	PWY-7153	grixazone biosynthesis
A1D11_17630	PWY-7977	A1D11_17630
A1D11_17715	PWY-7204	pyridoxal 5'-phosphate salvage II (plants)
A1D11_17715	PWY-7282	4-amino-2-methyl-5-phosphomethylpyrimidine biosynthesis (yeast)
A1D11_17725	PWY-5855	ubiquinol-7 biosynthesis (prokaryotic)
A1D11_17725	PWY-5856	ubiquinol-9 biosynthesis (prokaryotic)
A1D11_17725	PWY-5857	ubiquinol-10 biosynthesis (prokaryotic)
A1D11_17725	PWY-6708	ubiquinol-8 biosynthesis (prokaryotic)
A1D11_17725	PWY-6978	plastoquinol-9 biosynthesis II
A1D11_17760	PWY-6012	acyl carrier protein metabolism I
A1D11_17760	PWY-6012-1	acyl carrier protein metabolism II (mammalian)
A1D11_17760	PWY-6289	petrobactin biosynthesis
A1D11_17805	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
A1D11_17805	PWY-5686	UMP biosynthesis
A1D11_17805	PWY-7790	A1D11_17805
A1D11_17805	PWY-7791	A1D11_17805
A1D11_17805	PWY-7796	A1D11_17805
A1D11_17885	PWY-5663	tetrahydrobiopterin biosynthesis I
A1D11_17885	PWY-5664	tetrahydrobiopterin biosynthesis II
A1D11_17885	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
A1D11_17885	PWY-6703	preQ<sub>0</sub> biosynthesis
A1D11_17885	PWY-6983	tetrahydrobiopterin biosynthesis III
A1D11_17885	PWY-7442	drosopterin and aurodrosopterin biosynthesis
A1D11_17885	PWY-7852	A1D11_17885
A1D11_17895	PWY-6683	sulfate reduction III (assimilatory)
A1D11_17905	PWY-6683	sulfate reduction III (assimilatory)
A1D11_17915	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
A1D11_17915	PWY-5189	tetrapyrrole biosynthesis II (from glycine)
A1D11_17915	PWY-5194	siroheme biosynthesis
A1D11_17915	PWY-5196	factor 430 biosynthesis
A1D11_17915	PWY-7377	cob(II)yrinate <i>a,c</i>-diamide biosynthesis I (early cobalt insertion)
A1D11_17920	PWY-101	photosynthesis light reactions
A1D11_17965	PWY-6853	ethylene biosynthesis II (microbes)
A1D11_17970	PWY-5737	(5<i>R</i>)-carbapenem carboxylate biosynthesis
A1D11_17970	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
A1D11_17990	PWY-6163	chorismate biosynthesis from 3-dehydroquinate
A1D11_18045	PWY-5481	pyruvate fermentation to lactate
A1D11_18045	PWY-6901	superpathway of glucose and xylose degradation
A1D11_18205	PWY-6857	retinol biosynthesis
A1D11_18225	PWY-7942	A1D11_18225
A1D11_18300	PWY-6497	D-galactarate degradation II
A1D11_18310	PWY-6499	D-glucarate degradation II
A1D11_18325	PWY-6486	D-galacturonate degradation II
A1D11_18325	PWY-6497	D-galactarate degradation II
A1D11_18325	PWY-6499	D-glucarate degradation II
A1D11_18325	PWY-6501	D-glucuronate degradation II
A1D11_18360	PWY-5057	L-valine degradation II
A1D11_18360	PWY-5076	L-leucine degradation III
A1D11_18360	PWY-5078	L-isoleucine degradation II
A1D11_18360	PWY-5101	L-isoleucine biosynthesis II
A1D11_18360	PWY-5103	L-isoleucine biosynthesis III
A1D11_18360	PWY-5104	L-isoleucine biosynthesis IV
A1D11_18360	PWY-5108	L-isoleucine biosynthesis V
A1D11_18360	PWY-7767	A1D11_18360
A1D11_18375	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
A1D11_18375	PWY-6855	chitin degradation I (archaea)
A1D11_18375	PWY-6906	chitin derivatives degradation
A1D11_18420	PWY-5669	phosphatidylethanolamine biosynthesis I
A1D11_18430	PWY-5669	phosphatidylethanolamine biosynthesis I
A1D11_18450	PWY-6349	CDP-archaeol biosynthesis
A1D11_18650	PWY-6749	CMP-legionaminate biosynthesis I
A1D11_18655	PWY-6749	CMP-legionaminate biosynthesis I
A1D11_18845	PWY-7883	A1D11_18845
A1D11_18925	PWY-7799	A1D11_18925
A1D11_18925	PWY-7800	A1D11_18925
A1D11_18930	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
A1D11_19145	PWY-6936	seleno-amino acid biosynthesis
A1D11_19145	PWY-7274	D-cycloserine biosynthesis
A1D11_19145	PWY-7870	A1D11_19145
A1D11_19150	PWY-5188	tetrapyrrole biosynthesis I (from glutamate)
A1D11_19155	PWY-7560	methylerythritol phosphate pathway II
A1D11_19160	PWY-7560	methylerythritol phosphate pathway II
A1D11_19290	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
A1D11_19290	PWY-6148	tetrahydromethanopterin biosynthesis
A1D11_19290	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
A1D11_19290	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
A1D11_19290	PWY-7852	A1D11_19290
A1D11_19290	PWY-7853	A1D11_19290
A1D11_19295	PWY-6147	6-hydroxymethyl-dihydropterin diphosphate biosynthesis I
A1D11_19295	PWY-6148	tetrahydromethanopterin biosynthesis
A1D11_19295	PWY-6797	6-hydroxymethyl-dihydropterin diphosphate biosynthesis II (archaea)
A1D11_19295	PWY-7539	6-hydroxymethyl-dihydropterin diphosphate biosynthesis III (Chlamydia)
A1D11_19300	PWY-6614	tetrahydrofolate biosynthesis
A1D11_19310	PWY-5958	acridone alkaloid biosynthesis
A1D11_19310	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
A1D11_19310	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
A1D11_19315	PWY-5958	acridone alkaloid biosynthesis
A1D11_19315	PWY-6660	2-heptyl-3-hydroxy-4(1<i>H</i>)-quinolone biosynthesis
A1D11_19315	PWY-6661	4-hydroxy-2(1<i>H</i>)-quinolone biosynthesis
A1D11_19320	PWY-6936	seleno-amino acid biosynthesis
A1D11_19335	PWY-3961	phosphopantothenate biosynthesis II
A1D11_19345	PWY-6599	guanine and guanosine salvage II
A1D11_19345	PWY-6609	adenine and adenosine salvage III
A1D11_19345	PWY-6610	adenine and adenosine salvage IV
A1D11_19345	PWY-6620	guanine and guanosine salvage
A1D11_19430	PWY-6308	L-cysteine biosynthesis II (tRNA-dependent)
A1D11_19445	PWY-5514	UDP-<i>N</i>-acetyl-D-galactosamine biosynthesis II
A1D11_19465	PWY-7560	methylerythritol phosphate pathway II
A1D11_19555	PWY-6545	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis III
A1D11_19555	PWY-7184	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis I
A1D11_19555	PWY-7187	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis II
A1D11_19555	PWY-7197	pyrimidine deoxyribonucleotide phosphorylation
A1D11_19555	PWY-7198	pyrimidine deoxyribonucleotides <i>de novo</i> biosynthesis IV
A1D11_19555	PWY-7210	pyrimidine deoxyribonucleotides biosynthesis from CTP
A1D11_19665	PWY-6281	L-selenocysteine biosynthesis II (archaea and eukaryotes)
A1D11_19670	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
A1D11_19675	PWY-6466	pyridoxal 5'-phosphate biosynthesis II
A1D11_19680	PWY-5265	peptidoglycan biosynthesis II (staphylococci)
A1D11_19680	PWY-6471	peptidoglycan biosynthesis IV (Enterococcus faecium)
A1D11_19685	PWY-5695	urate biosynthesis/inosine 5'-phosphate degradation
A1D11_19685	PWY-6596	adenosine nucleotides degradation I
A1D11_19685	PWY-7221	guanosine ribonucleotides <i>de novo</i> biosynthesis
A1D11_19915	PWY-5350	thiosulfate disproportionation III (rhodanese)
A1D11_19915	PWY-7927	A1D11_19915
A1D11_19985	PWY-7805	A1D11_19985
A1D11_19985	PWY-7807	A1D11_19985
A1D11_20005	PWY-7805	A1D11_20005
A1D11_20005	PWY-7807	A1D11_20005
A1D11_20045	PWY-7219	adenosine ribonucleotides <i>de novo</i> biosynthesis
A1D11_20140	PWY-3341	L-proline biosynthesis III
A1D11_20140	PWY-4981	L-proline biosynthesis II (from arginine)
A1D11_20140	PWY-6344	L-ornithine degradation II (Stickland reaction)
A1D11_20140	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
A1D11_20150	PWY-31	canavanine degradation
A1D11_20150	PWY-4984	urea cycle
A1D11_20150	PWY-6305	putrescine biosynthesis IV
A1D11_20150	PWY-6922	L-<i>N<sup>&delta;</sup></i>-acetylornithine biosynthesis
A1D11_20275	PWY-5484	glycolysis II (from fructose 6-phosphate)
A1D11_20325	PWY-4261	glycerol degradation I
A1D11_20325	PWY-5530	sorbitol biosynthesis II
A1D11_20440	PWY-5642	2,4-dinitrotoluene degradation
A1D11_20445	PWY-6507	4-deoxy-L-<i>threo</i>-hex-4-enopyranuronate degradation
A1D11_20470	PWY-5940	streptomycin biosynthesis
A1D11_20470	PWY-7237	<i>myo</i>-, <i>chiro</i>- and <i>scillo</i>-inositol degradation
A1D11_20470	PWY-7241	<I>myo</I>-inositol degradation II
A1D11_20485	PWY-1042	glycolysis IV (plant cytosol)
A1D11_20485	PWY-1861	formaldehyde assimilation II (RuMP Cycle)
A1D11_20485	PWY-5484	glycolysis II (from fructose 6-phosphate)
A1D11_20485	PWY-6142	gluconeogenesis II (<i>Methanobacterium thermoautotrophicum</i>)
A1D11_20485	PWY-7385	1,3-propanediol biosynthesis (engineered)