SD85_00005 SM00382 ATPases associated with a variety of cellular activities SD85_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain SD85_00010 SM00480 DNA polymerase III beta subunit SD85_00030 SM00387 Histidine kinase-like ATPases SD85_00030 SM00433 TopoisomeraseII SD85_00035 SM00434 DNA Topoisomerase IV SD85_00070 SM00116 Domain in cystathionine beta-synthase and other proteins. SD85_00070 SM01240 SD85_00070 SD85_00075 SM00936 Penicillin-binding protein 5, C-terminal domain SD85_00110 SM00257 Lysin motif SD85_00110 SM00636 SD85_00110 SD85_00125 SM00382 ATPases associated with a variety of cellular activities SD85_00135 SM00493 SD85_00135 SD85_00230 SM00465 GIY-YIG type nucleases (URI domain) SD85_00240 SM00966 SpoVT / AbrB like domain SD85_00255 SM01208 SD85_00255 SD85_00260 SM00493 SD85_00260 SD85_00265 SM00650 Ribosomal RNA adenine dimethylases SD85_00315 SM01400 SD85_00315 SD85_00335 SM00487 DEAD-like helicases superfamily SD85_00335 SM00490 helicase superfamily c-terminal domain SD85_00335 SM00982 SD85_00335 SD85_00335 SM01058 CarD-like/TRCF domain SD85_00340 SM00966 SpoVT / AbrB like domain SD85_00355 SM00363 S4 RNA-binding domain SD85_00375 SM00316 Ribosomal protein S1-like RNA-binding domain SD85_00390 SM00331 Sigma factor PP2C-like phosphatases SD85_00390 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain SD85_00400 SM00220 Serine/Threonine protein kinases, catalytic domain SD85_00405 SM00977 TilS substrate C-terminal domain SD85_00415 SM00382 ATPases associated with a variety of cellular activities SD85_00460 SM00905 Dihydroneopterin aldolase SD85_00470 SM00530 Helix-turn-helix XRE-family like proteins SD85_00520 SM00382 ATPases associated with a variety of cellular activities SD85_00520 SM01086 C-terminal, D2-small domain, of ClpB protein SD85_00525 SM00382 ATPases associated with a variety of cellular activities SD85_00535 SM00670 Large family of predicted nucleotide-binding domains SD85_00565 SM00840 SD85_00565 SD85_00570 SM00535 Ribonuclease III family SD85_00575 SM00967 RNA 2'-O ribose methyltransferase substrate binding SD85_00600 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. SD85_00600 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SD85_00605 SM00649 Ribosomal protein L11/L12 SD85_00635 SM00663 RNA polymerase I subunit A N-terminus SD85_00655 SM00838 Elongation factor G C-terminus SD85_00655 SM00889 Elongation factor G, domain IV SD85_00670 SM01403 SD85_00670 SD85_00690 SM01382 SD85_00690 SD85_00690 SM01383 SD85_00690 SD85_00705 SM00322 K homology RNA-binding domain SD85_00725 SM01374 SD85_00725 SD85_00730 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. SD85_00795 SM00316 Ribosomal protein S1-like RNA-binding domain SD85_00815 SM00662 RNA polymerases D SD85_00825 SM00382 ATPases associated with a variety of cellular activities SD85_00830 SM00382 ATPases associated with a variety of cellular activities SD85_00870 SM00646 SD85_00870 SD85_00885 SM01251 SD85_00885 SD85_00990 SM00342 helix_turn_helix, arabinose operon control protein SD85_01120 SM00448 cheY-homologous receiver domain SD85_01120 SM00862 Transcriptional regulatory protein, C terminal SD85_01125 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SD85_01125 SM00387 Histidine kinase-like ATPases SD85_01125 SM00388 His Kinase A (phosphoacceptor) domain SD85_01270 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_01295 SM00342 helix_turn_helix, arabinose operon control protein SD85_01345 SM00450 Rhodanese Homology Domain SD85_01365 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_01365 SM00866 SD85_01365 SD85_01405 SM00387 Histidine kinase-like ATPases SD85_01410 SM00448 cheY-homologous receiver domain SD85_01415 SM01130 SD85_01415 SD85_01430 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SD85_01435 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_01435 SM00895 SD85_01435 SD85_01440 SM00858 SD85_01440 SD85_01455 SM00448 cheY-homologous receiver domain SD85_01455 SM00862 Transcriptional regulatory protein, C terminal SD85_01460 SM00387 Histidine kinase-like ATPases SD85_01460 SM00388 His Kinase A (phosphoacceptor) domain SD85_01465 SM00382 ATPases associated with a variety of cellular activities SD85_01480 SM00093 SERine Proteinase INhibitors SD85_01490 SM00327 von Willebrand factor (vWF) type A domain SD85_01600 SM00028 Tetratricopeptide repeats SD85_01610 SM00642 Alpha-amylase domain SD85_01620 SM00382 ATPases associated with a variety of cellular activities SD85_01675 SM00116 Domain in cystathionine beta-synthase and other proteins. SD85_01675 SM00382 ATPases associated with a variety of cellular activities SD85_01710 SM00632 SD85_01710 SD85_01710 SM00642 Alpha-amylase domain SD85_01730 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_01845 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SD85_01875 SM00833 Cobalamin synthesis protein cobW C-terminal domain SD85_01885 SM00062 Bacterial periplasmic substrate-binding proteins SD85_01905 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_01915 SM00382 ATPases associated with a variety of cellular activities SD85_01935 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SD85_01935 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SD85_01945 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SD85_01960 SM00823 Phosphopantetheine attachment site SD85_01965 SM00823 Phosphopantetheine attachment site SD85_01970 SM00823 Phosphopantetheine attachment site SD85_01995 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_02010 SM00382 ATPases associated with a variety of cellular activities SD85_02020 SM00062 Bacterial periplasmic substrate-binding proteins SD85_02060 SM00710 Parallel beta-helix repeats SD85_02060 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses SD85_02085 SM00382 ATPases associated with a variety of cellular activities SD85_02095 SM00448 cheY-homologous receiver domain SD85_02095 SM00862 Transcriptional regulatory protein, C terminal SD85_02100 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SD85_02100 SM00387 Histidine kinase-like ATPases SD85_02100 SM00388 His Kinase A (phosphoacceptor) domain SD85_02105 SM00028 Tetratricopeptide repeats SD85_02135 SM00382 ATPases associated with a variety of cellular activities SD85_02165 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SD85_02170 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_02205 SM00420 helix_turn_helix, Deoxyribose operon repressor SD85_02230 SM01329 SD85_02230 SD85_02275 SM00796 Allophanate hydrolase subunit 1 SD85_02280 SM00797 Allophanate hydrolase subunit 2 SD85_02285 SM00346 helix_turn_helix isocitrate lyase regulation SD85_02360 SM00344 helix_turn_helix ASNC type SD85_02365 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SD85_02365 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SD85_02365 SM00493 SD85_02365 SD85_02375 SM00267 diguanylate cyclase SD85_02460 SM00091 PAS domain SD85_02460 SM00387 Histidine kinase-like ATPases SD85_02465 SM00448 cheY-homologous receiver domain SD85_02485 SM00382 ATPases associated with a variety of cellular activities SD85_02535 SM00487 DEAD-like helicases superfamily SD85_02535 SM00490 helicase superfamily c-terminal domain SD85_02565 SM01005 Alanine racemase, C-terminal domain SD85_02590 SM00387 Histidine kinase-like ATPases SD85_02595 SM00331 Sigma factor PP2C-like phosphatases SD85_02615 SM00331 Sigma factor PP2C-like phosphatases SD85_02615 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain SD85_02620 SM00316 Ribosomal protein S1-like RNA-binding domain SD85_02620 SM00732 Likely ribonuclease with RNase H fold. SD85_02630 SM00731 SprT homologues. SD85_02675 SM00422 helix_turn_helix, mercury resistance SD85_02690 SM00822 SD85_02690 SD85_02705 SM00822 SD85_02705 SD85_02715 SM00357 Cold shock protein domain SD85_02720 SM01058 CarD-like/TRCF domain SD85_02730 SM00530 Helix-turn-helix XRE-family like proteins SD85_02735 SM00342 helix_turn_helix, arabinose operon control protein SD85_02735 SM00871 Bacterial transcription activator, effector binding domain SD85_02760 SM00849 Metallo-beta-lactamase superfamily SD85_02765 SM00344 helix_turn_helix ASNC type SD85_02775 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_02805 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SD85_02815 SM00226 Low molecular weight phosphatase family SD85_02830 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_02840 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SD85_02860 SM00387 Histidine kinase-like ATPases SD85_02865 SM00421 helix_turn_helix, Lux Regulon SD85_02865 SM00448 cheY-homologous receiver domain SD85_02900 SM00422 helix_turn_helix, mercury resistance SD85_02900 SM00871 Bacterial transcription activator, effector binding domain SD85_02930 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_02995 SM00354 helix_turn _helix lactose operon repressor SD85_03030 SM00382 ATPases associated with a variety of cellular activities SD85_03045 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_03060 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_03060 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SD85_03065 SM00530 Helix-turn-helix XRE-family like proteins SD85_03090 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_03090 SM00895 SD85_03090 SD85_03095 SM00257 Lysin motif SD85_03095 SM00636 SD85_03095 SD85_03115 SM00098 Alkaline phosphatase homologues SD85_03130 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SD85_03165 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_03165 SM00866 SD85_03165 SD85_03250 SM00382 ATPases associated with a variety of cellular activities SD85_03260 SM00881 CoA binding domain SD85_03285 SM00883 Chaperonin 10 Kd subunit SD85_03300 SM00028 Tetratricopeptide repeats SD85_03300 SM00382 ATPases associated with a variety of cellular activities SD85_03305 SM00829 Enoylreductase SD85_03350 SM00829 Enoylreductase SD85_03425 SM00460 Transglutaminase/protease-like homologues SD85_03460 SM01001 AIR carboxylase SD85_03470 SM00998 Adenylosuccinate lyase C-terminus SD85_03485 SM01211 SD85_03485 SD85_03510 SM00798 AICARFT/IMPCHase bienzyme SD85_03510 SM00851 MGS-like domain SD85_03515 SM01209 SD85_03515 SD85_03515 SM01210 SD85_03515 SD85_03520 SM00344 helix_turn_helix ASNC type SD85_03565 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SD85_03565 SM00292 breast cancer carboxy-terminal domain SD85_03565 SM00532 Ligase N family SD85_03605 SM00845 GatB domain SD85_03620 SM00046 Diacylglycerol kinase catalytic domain (presumed) SD85_03640 SM00487 DEAD-like helicases superfamily SD85_03670 SM00028 Tetratricopeptide repeats SD85_03745 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SD85_03745 SM00387 Histidine kinase-like ATPases SD85_03750 SM00342 helix_turn_helix, arabinose operon control protein SD85_03750 SM00448 cheY-homologous receiver domain SD85_03775 SM00342 helix_turn_helix, arabinose operon control protein SD85_03875 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_03945 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SD85_03950 SM00382 ATPases associated with a variety of cellular activities SD85_03960 SM00422 helix_turn_helix, mercury resistance SD85_03980 SM00382 ATPases associated with a variety of cellular activities SD85_03985 SM00487 DEAD-like helicases superfamily SD85_03985 SM00490 helicase superfamily c-terminal domain SD85_03995 SM00829 Enoylreductase SD85_04000 SM00382 ATPases associated with a variety of cellular activities SD85_04030 SM00656 SD85_04030 SD85_04040 SM00387 Histidine kinase-like ATPases SD85_04045 SM00448 cheY-homologous receiver domain SD85_04060 SM00849 Metallo-beta-lactamase superfamily SD85_04145 SM00642 Alpha-amylase domain SD85_04150 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_04150 SM00866 SD85_04150 SD85_04180 SM00226 Low molecular weight phosphatase family SD85_04250 SM00478 endonuclease III SD85_04290 SM00861 Transketolase, pyrimidine binding domain SD85_04305 SM00382 ATPases associated with a variety of cellular activities SD85_04355 SM00382 ATPases associated with a variety of cellular activities SD85_04360 SM00382 ATPases associated with a variety of cellular activities SD85_04375 SM00387 Histidine kinase-like ATPases SD85_04380 SM00421 helix_turn_helix, Lux Regulon SD85_04380 SM00448 cheY-homologous receiver domain SD85_04385 SM00382 ATPases associated with a variety of cellular activities SD85_04430 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_04510 SM00287 Bacterial SH3 domain homologues SD85_04540 SM00478 endonuclease III SD85_04540 SM00525 SD85_04540 SD85_04570 SM00382 ATPases associated with a variety of cellular activities SD85_04740 SM01060 SD85_04740 SD85_04745 SM00382 ATPases associated with a variety of cellular activities SD85_04750 SM00062 Bacterial periplasmic substrate-binding proteins SD85_04780 SM00530 Helix-turn-helix XRE-family like proteins SD85_04795 SM00567 E-Z type HEAT repeats SD85_04825 SM00763 PrkA AAA domain SD85_04835 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_04865 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_04870 SM00382 ATPases associated with a variety of cellular activities SD85_04875 SM00382 ATPases associated with a variety of cellular activities SD85_04885 SM00357 Cold shock protein domain SD85_04895 SM00267 diguanylate cyclase SD85_04925 SM00318 Staphylococcal nuclease homologues SD85_04935 SM00363 S4 RNA-binding domain SD85_04945 SM00116 Domain in cystathionine beta-synthase and other proteins. SD85_04995 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SD85_04995 SM00387 Histidine kinase-like ATPases SD85_05000 SM00421 helix_turn_helix, Lux Regulon SD85_05000 SM00448 cheY-homologous receiver domain SD85_05020 SM00257 Lysin motif SD85_05040 SM00098 Alkaline phosphatase homologues SD85_05045 SM00257 Lysin motif SD85_05075 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_05105 SM00563 Phosphate acyltransferases SD85_05120 SM01091 Transporter associated domain SD85_05125 SM00422 helix_turn_helix, mercury resistance SD85_05135 SM01091 Transporter associated domain SD85_05195 SM00382 ATPases associated with a variety of cellular activities SD85_05200 SM00382 ATPases associated with a variety of cellular activities SD85_05255 SM00729 Elongator protein 3, MiaB family, Radical SAM SD85_05285 SM00382 ATPases associated with a variety of cellular activities SD85_05305 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SD85_05340 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_05370 SM00382 ATPases associated with a variety of cellular activities SD85_05455 SM01022 SD85_05455 SD85_05470 SM00849 Metallo-beta-lactamase superfamily SD85_05510 SM00829 Enoylreductase SD85_05520 SM00855 Phosphoglycerate mutase family SD85_05540 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SD85_05555 SM00914 SD85_05555 SD85_05570 SM00894 Excalibur calcium-binding domain SD85_05605 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_05635 SM00354 helix_turn _helix lactose operon repressor SD85_05770 SM00342 helix_turn_helix, arabinose operon control protein SD85_05775 SM00354 helix_turn _helix lactose operon repressor SD85_05795 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_05840 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SD85_05870 SM00316 Ribosomal protein S1-like RNA-binding domain SD85_05935 SM00859 Semialdehyde dehydrogenase, NAD binding domain SD85_05955 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain SD85_05960 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SD85_06010 SM00825 Beta-ketoacyl synthase SD85_06020 SM00382 ATPases associated with a variety of cellular activities SD85_06025 SM00382 ATPases associated with a variety of cellular activities SD85_06070 SM00382 ATPases associated with a variety of cellular activities SD85_06075 SM00382 ATPases associated with a variety of cellular activities SD85_06140 SM01118 SD85_06140 SD85_06150 SM00954 Region found in RelA / SpoT proteins SD85_06335 SM00028 Tetratricopeptide repeats SD85_06455 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SD85_06455 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SD85_06505 SM00382 ATPases associated with a variety of cellular activities SD85_06515 SM00835 Cupin SD85_06545 SM00829 Enoylreductase SD85_06565 SM00354 helix_turn _helix lactose operon repressor SD85_06575 SM00858 SD85_06575 SD85_06590 SM00382 ATPases associated with a variety of cellular activities SD85_06595 SM00028 Tetratricopeptide repeats SD85_06610 SM00257 Lysin motif SD85_06610 SM00644 SD85_06610 SD85_06635 SM00530 Helix-turn-helix XRE-family like proteins SD85_06650 SM00382 ATPases associated with a variety of cellular activities SD85_06755 SM00257 Lysin motif SD85_06820 SM00257 Lysin motif SD85_06820 SM00644 SD85_06820 SD85_06870 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SD85_06895 SM00382 ATPases associated with a variety of cellular activities SD85_06910 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SD85_06920 SM00382 ATPases associated with a variety of cellular activities SD85_06980 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase SD85_06995 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_07005 SM00028 Tetratricopeptide repeats SD85_07015 SM00855 Phosphoglycerate mutase family SD85_07040 SM00382 ATPases associated with a variety of cellular activities SD85_07055 SM00448 cheY-homologous receiver domain SD85_07055 SM00862 Transcriptional regulatory protein, C terminal SD85_07060 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SD85_07060 SM00387 Histidine kinase-like ATPases SD85_07060 SM00388 His Kinase A (phosphoacceptor) domain SD85_07085 SM00116 Domain in cystathionine beta-synthase and other proteins. SD85_07085 SM00924 MgtE intracellular N domain SD85_07090 SM00422 helix_turn_helix, mercury resistance SD85_07105 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_07140 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen SD85_07145 SM00052 Putative diguanylate phosphodiesterase SD85_07145 SM00267 diguanylate cyclase SD85_07205 SM00091 PAS domain SD85_07205 SM00387 Histidine kinase-like ATPases SD85_07205 SM00388 His Kinase A (phosphoacceptor) domain SD85_07250 SM01007 Class II Aldolase and Adducin N-terminal domain SD85_07275 SM00387 Histidine kinase-like ATPases SD85_07275 SM00388 His Kinase A (phosphoacceptor) domain SD85_07280 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_07295 SM00382 ATPases associated with a variety of cellular activities SD85_07295 SM01086 C-terminal, D2-small domain, of ClpB protein SD85_07385 SM00354 helix_turn _helix lactose operon repressor SD85_07390 SM01061 CAT RNA binding domain SD85_07425 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SD85_07425 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SD85_07445 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SD85_07445 SM00091 PAS domain SD85_07445 SM00387 Histidine kinase-like ATPases SD85_07445 SM00388 His Kinase A (phosphoacceptor) domain SD85_07460 SM00260 Two component signalling adaptor domain SD85_07460 SM00448 cheY-homologous receiver domain SD85_07475 SM00257 Lysin motif SD85_07490 SM00052 Putative diguanylate phosphodiesterase SD85_07590 SM00852 Probable molybdopterin binding domain SD85_07610 SM00382 ATPases associated with a variety of cellular activities SD85_07615 SM00382 ATPases associated with a variety of cellular activities SD85_07630 SM00382 ATPases associated with a variety of cellular activities SD85_07635 SM01066 Carbohydrate binding domain SD85_07640 SM00420 helix_turn_helix, Deoxyribose operon repressor SD85_07640 SM01134 SD85_07640 SD85_07675 SM00382 ATPases associated with a variety of cellular activities SD85_07700 SM00966 SpoVT / AbrB like domain SD85_07705 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SD85_07705 SM00091 PAS domain SD85_07705 SM00387 Histidine kinase-like ATPases SD85_07705 SM00388 His Kinase A (phosphoacceptor) domain SD85_07725 SM00849 Metallo-beta-lactamase superfamily SD85_07760 SM00861 Transketolase, pyrimidine binding domain SD85_07860 SM00838 Elongation factor G C-terminus SD85_07880 SM00670 Large family of predicted nucleotide-binding domains SD85_07905 SM00878 Biotin carboxylase C-terminal domain SD85_07950 SM00116 Domain in cystathionine beta-synthase and other proteins. SD85_08000 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SD85_08055 SM00740 SD85_08055 SD85_08065 SM00740 SD85_08065 SD85_08130 SM00842 Cell division protein FtsA SD85_08135 SM00864 Tubulin/FtsZ family, GTPase domain SD85_08135 SM00865 Tubulin/FtsZ family, C-terminal domain SD85_08160 SM00382 ATPases associated with a variety of cellular activities SD85_08195 SM00363 S4 RNA-binding domain SD85_08220 SM00363 S4 RNA-binding domain SD85_08245 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain SD85_08250 SM00851 MGS-like domain SD85_08250 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain SD85_08250 SM01209 SD85_08250 SD85_08265 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family SD85_08320 SM00831 Cation transporter/ATPase, N-terminus SD85_08335 SM00072 Guanylate kinase homologues. SD85_08340 SM01409 SD85_08340 SD85_08350 SM00487 DEAD-like helicases superfamily SD85_08350 SM00490 helicase superfamily c-terminal domain SD85_08375 SM00331 Sigma factor PP2C-like phosphatases SD85_08375 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain SD85_08380 SM00220 Serine/Threonine protein kinases, catalytic domain SD85_08380 SM00740 SD85_08380 SD85_08395 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain SD85_08415 SM01120 SD85_08415 SD85_08415 SM01121 SD85_08415 SD85_08430 SM00487 DEAD-like helicases superfamily SD85_08430 SM00490 helicase superfamily c-terminal domain SD85_08445 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. SD85_08450 SM00822 SD85_08450 SD85_08460 SM00358 Double-stranded RNA binding motif SD85_08460 SM00535 Ribonuclease III family SD85_08465 SM00968 SMC proteins Flexible Hinge Domain SD85_08470 SM00382 ATPases associated with a variety of cellular activities SD85_08470 SM00962 SRP54-type protein, GTPase domain SD85_08470 SM00963 SRP54-type protein, helical bundle domain SD85_08495 SM00382 ATPases associated with a variety of cellular activities SD85_08495 SM00962 SRP54-type protein, GTPase domain SD85_08495 SM00963 SRP54-type protein, helical bundle domain SD85_08555 SM00881 CoA binding domain SD85_08565 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain SD85_08565 SM00437 Bacterial DNA topoisomerase I DNA-binding domain SD85_08565 SM00493 SD85_08565 SD85_08625 SM00382 ATPases associated with a variety of cellular activities SD85_08675 SM00448 cheY-homologous receiver domain SD85_08710 SM00962 SRP54-type protein, GTPase domain SD85_08720 SM00448 cheY-homologous receiver domain SD85_08725 SM00073 Histidine Phosphotransfer domain SD85_08725 SM00260 Two component signalling adaptor domain SD85_08725 SM00387 Histidine kinase-like ATPases SD85_08725 SM01231 SD85_08725 SD85_08730 SM00260 Two component signalling adaptor domain SD85_08790 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SD85_08800 SM00479 SD85_08800 SD85_08800 SM00481 DNA polymerase alpha chain like domain SD85_08810 SM00316 Ribosomal protein S1-like RNA-binding domain SD85_08810 SM00322 K homology RNA-binding domain SD85_08845 SM00904 Riboflavin kinase SD85_08850 SM01387 SD85_08850 SD85_08855 SM00316 Ribosomal protein S1-like RNA-binding domain SD85_08855 SM00322 K homology RNA-binding domain SD85_08885 SM00859 Semialdehyde dehydrogenase, NAD binding domain SD85_08895 SM01130 SD85_08895 SD85_08900 SM00849 Metallo-beta-lactamase superfamily SD85_08915 SM00382 ATPases associated with a variety of cellular activities SD85_08915 SM00843 SD85_08915 SD85_08920 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_08920 SM00866 SD85_08920 SD85_08955 SM00530 Helix-turn-helix XRE-family like proteins SD85_08965 SM00852 Probable molybdopterin binding domain SD85_08970 SM00382 ATPases associated with a variety of cellular activities SD85_08980 SM00322 K homology RNA-binding domain SD85_08980 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SD85_08995 SM00829 Enoylreductase SD85_09005 SM00729 Elongator protein 3, MiaB family, Radical SAM SD85_09020 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SD85_09020 SM00534 ATPase domain of DNA mismatch repair MUTS family SD85_09025 SM00853 MutL C terminal dimerisation domain SD85_09025 SM01340 SD85_09025 SD85_09055 SM00849 Metallo-beta-lactamase superfamily SD85_09065 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. SD85_09070 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. SD85_09075 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. SD85_09085 SM00825 Beta-ketoacyl synthase SD85_09105 SM00822 SD85_09105 SD85_09105 SM00823 Phosphopantetheine attachment site SD85_09105 SM00825 Beta-ketoacyl synthase SD85_09105 SM00826 SD85_09105 SD85_09105 SM01294 SD85_09105 SD85_09110 SM00822 SD85_09110 SD85_09110 SM00823 Phosphopantetheine attachment site SD85_09110 SM00825 Beta-ketoacyl synthase SD85_09110 SM00826 SD85_09110 SD85_09110 SM01294 SD85_09110 SD85_09115 SM00822 SD85_09115 SD85_09115 SM00823 Phosphopantetheine attachment site SD85_09115 SM00825 Beta-ketoacyl synthase SD85_09115 SM00826 SD85_09115 SD85_09115 SM01294 SD85_09115 SD85_09120 SM00822 SD85_09120 SD85_09120 SM00823 Phosphopantetheine attachment site SD85_09120 SM00825 Beta-ketoacyl synthase SD85_09120 SM00826 SD85_09120 SD85_09120 SM01294 SD85_09120 SD85_09125 SM00823 Phosphopantetheine attachment site SD85_09125 SM00825 Beta-ketoacyl synthase SD85_09125 SM01294 SD85_09125 SD85_09140 SM00849 Metallo-beta-lactamase superfamily SD85_09225 SM00646 SD85_09225 SD85_09235 SM00382 ATPases associated with a variety of cellular activities SD85_09255 SM00422 helix_turn_helix, mercury resistance SD85_09260 SM01230 SD85_09260 SD85_09265 SM00860 SMI1 / KNR4 family SD85_09315 SM01005 Alanine racemase, C-terminal domain SD85_09450 SM00257 Lysin motif SD85_09455 SM00857 Resolvase, N terminal domain SD85_09465 SM00861 Transketolase, pyrimidine binding domain SD85_09490 SM00448 cheY-homologous receiver domain SD85_09560 SM01207 SD85_09560 SD85_09565 SM00881 CoA binding domain SD85_09570 SM00387 Histidine kinase-like ATPases SD85_09570 SM00433 TopoisomeraseII SD85_09575 SM00434 DNA Topoisomerase IV SD85_09595 SM01067 Cellulose binding domain SD85_09660 SM00878 Biotin carboxylase C-terminal domain SD85_09695 SM00824 Thioesterase SD85_09700 SM00823 Phosphopantetheine attachment site SD85_09705 SM00823 Phosphopantetheine attachment site SD85_09705 SM00825 Beta-ketoacyl synthase SD85_09710 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. SD85_09750 SM00257 Lysin motif SD85_09750 SM00644 SD85_09750 SD85_09785 SM00047 Lysozyme subfamily 2 SD85_09880 SM00507 HNH nucleases SD85_09970 SM00530 Helix-turn-helix XRE-family like proteins SD85_09975 SM00530 Helix-turn-helix XRE-family like proteins SD85_10035 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase SD85_10055 SM00822 SD85_10055 SD85_10110 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SD85_10140 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SD85_10140 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SD85_10160 SM00656 SD85_10160 SD85_10230 SM00530 Helix-turn-helix XRE-family like proteins SD85_10320 SM00028 Tetratricopeptide repeats SD85_10375 SM00860 SMI1 / KNR4 family SD85_10390 SM00342 helix_turn_helix, arabinose operon control protein SD85_10415 SM00871 Bacterial transcription activator, effector binding domain SD85_10430 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SD85_10470 SM00421 helix_turn_helix, Lux Regulon SD85_10470 SM00448 cheY-homologous receiver domain SD85_10480 SM00257 Lysin motif SD85_10485 SM00341 Helicase and RNase D C-terminal SD85_10485 SM00487 DEAD-like helicases superfamily SD85_10485 SM00490 helicase superfamily c-terminal domain SD85_10485 SM00956 SD85_10485 SD85_10540 SM00861 Transketolase, pyrimidine binding domain SD85_10545 SM00327 von Willebrand factor (vWF) type A domain SD85_10550 SM00382 ATPases associated with a variety of cellular activities SD85_10560 SM00257 Lysin motif SD85_10650 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SD85_10650 SM00245 tail specific protease SD85_10685 SM00014 Acid phosphatase homologues SD85_10730 SM00882 Coenzyme A transferase SD85_10735 SM00882 Coenzyme A transferase SD85_10800 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_10845 SM00382 ATPases associated with a variety of cellular activities SD85_10895 SM00567 E-Z type HEAT repeats SD85_10895 SM00932 Scaffold protein Nfu/NifU N terminal SD85_10900 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SD85_10920 SM00357 Cold shock protein domain SD85_10960 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SD85_10960 SM00475 5'-3' exonuclease SD85_11020 SM00354 helix_turn _helix lactose operon repressor SD85_11035 SM00491 SD85_11035 SD85_11045 SM00981 SD85_11045 SD85_11075 SM00487 DEAD-like helicases superfamily SD85_11075 SM00490 helicase superfamily c-terminal domain SD85_11135 SM00478 endonuclease III SD85_11135 SM00525 SD85_11135 SD85_11165 SM00479 SD85_11165 SD85_11165 SM00487 DEAD-like helicases superfamily SD85_11165 SM00491 SD85_11165 SD85_11205 SM00851 MGS-like domain SD85_11255 SM00914 SD85_11255 SD85_11260 SM00028 Tetratricopeptide repeats SD85_11325 SM00138 Methyltransferase, chemotaxis proteins SD85_11335 SM00562 SD85_11335 SD85_11365 SM00411 bacterial (prokaryotic) histone like domain SD85_11420 SM00316 Ribosomal protein S1-like RNA-binding domain SD85_11460 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SD85_11480 SM00257 Lysin motif SD85_11490 SM00487 DEAD-like helicases superfamily SD85_11490 SM00490 helicase superfamily c-terminal domain SD85_11535 SM00091 PAS domain SD85_11535 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SD85_11535 SM00387 Histidine kinase-like ATPases SD85_11535 SM00388 His Kinase A (phosphoacceptor) domain SD85_11540 SM00448 cheY-homologous receiver domain SD85_11540 SM00862 Transcriptional regulatory protein, C terminal SD85_11560 SM00363 S4 RNA-binding domain SD85_11575 SM00936 Penicillin-binding protein 5, C-terminal domain SD85_11705 SM00387 Histidine kinase-like ATPases SD85_11715 SM00936 Penicillin-binding protein 5, C-terminal domain SD85_11755 SM00919 Malic enzyme, NAD binding domain SD85_11755 SM01274 SD85_11755 SD85_11770 SM00870 SD85_11770 SD85_11775 SM00530 Helix-turn-helix XRE-family like proteins SD85_11830 SM00530 Helix-turn-helix XRE-family like proteins SD85_11910 SM00849 Metallo-beta-lactamase superfamily SD85_11960 SM01350 SD85_11960 SD85_12015 SM00382 ATPases associated with a variety of cellular activities SD85_12025 SM00062 Bacterial periplasmic substrate-binding proteins SD85_12025 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. SD85_12035 SM00046 Diacylglycerol kinase catalytic domain (presumed) SD85_12045 SM00422 helix_turn_helix, mercury resistance SD85_12055 SM00861 Transketolase, pyrimidine binding domain SD85_12075 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SD85_12085 SM00091 PAS domain SD85_12085 SM00382 ATPases associated with a variety of cellular activities SD85_12130 SM00646 SD85_12130 SD85_12155 SM00448 cheY-homologous receiver domain SD85_12165 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SD85_12180 SM00363 S4 RNA-binding domain SD85_12185 SM00861 Transketolase, pyrimidine binding domain SD85_12220 SM00878 Biotin carboxylase C-terminal domain SD85_12265 SM00382 ATPases associated with a variety of cellular activities SD85_12275 SM00841 Elongation factor P, C-terminal SD85_12275 SM01185 SD85_12275 SD85_12310 SM00529 Helix-turn-helix diphteria tox regulatory element SD85_12320 SM00450 Rhodanese Homology Domain SD85_12340 SM00487 DEAD-like helicases superfamily SD85_12340 SM00490 helicase superfamily c-terminal domain SD85_12355 SM00530 Helix-turn-helix XRE-family like proteins SD85_12415 SM00382 ATPases associated with a variety of cellular activities SD85_12420 SM00116 Domain in cystathionine beta-synthase and other proteins. SD85_12430 SM01091 Transporter associated domain SD85_12455 SM00849 Metallo-beta-lactamase superfamily SD85_12475 SM00631 SD85_12475 SD85_12495 SM00028 Tetratricopeptide repeats SD85_12535 SM00382 ATPases associated with a variety of cellular activities SD85_12540 SM00382 ATPases associated with a variety of cellular activities SD85_12620 SM00518 AP endonuclease family 2 SD85_12625 SM00487 DEAD-like helicases superfamily SD85_12625 SM00490 helicase superfamily c-terminal domain SD85_12660 SM00400 zinc finger SD85_12660 SM00493 SD85_12660 SD85_12675 SM00116 Domain in cystathionine beta-synthase and other proteins. SD85_12720 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SD85_12775 SM00729 Elongator protein 3, MiaB family, Radical SAM SD85_12790 SM00271 DnaJ molecular chaperone homology domain SD85_12810 SM00729 Elongator protein 3, MiaB family, Radical SAM SD85_12815 SM00838 Elongation factor G C-terminus SD85_12850 SM00849 Metallo-beta-lactamase superfamily SD85_12860 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SD85_12880 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SD85_12890 SM01103 SD85_12890 SD85_12930 SM00644 SD85_12930 SD85_12940 SM01350 SD85_12940 SD85_12995 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_13015 SM00342 helix_turn_helix, arabinose operon control protein SD85_13035 SM00422 helix_turn_helix, mercury resistance SD85_13055 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_13055 SM00895 SD85_13055 SD85_13075 SM00861 Transketolase, pyrimidine binding domain SD85_13095 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SD85_13115 SM00014 Acid phosphatase homologues SD85_13125 SM00287 Bacterial SH3 domain homologues SD85_13170 SM00342 helix_turn_helix, arabinose operon control protein SD85_13175 SM00422 helix_turn_helix, mercury resistance SD85_13180 SM00422 helix_turn_helix, mercury resistance SD85_13190 SM00829 Enoylreductase SD85_13200 SM00640 Glycosyl hydrolases family 32 SD85_13225 SM00382 ATPases associated with a variety of cellular activities SD85_13315 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SD85_13315 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region SD85_13345 SM00650 Ribosomal RNA adenine dimethylases SD85_13400 SM00732 Likely ribonuclease with RNase H fold. SD85_13410 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SD85_13435 SM00382 ATPases associated with a variety of cellular activities SD85_13440 SM00028 Tetratricopeptide repeats SD85_13460 SM00382 ATPases associated with a variety of cellular activities SD85_13505 SM00287 Bacterial SH3 domain homologues SD85_13505 SM00646 SD85_13505 SD85_13515 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SD85_13515 SM00954 Region found in RelA / SpoT proteins SD85_13565 SM01323 SD85_13565 SD85_13585 SM00382 ATPases associated with a variety of cellular activities SD85_13590 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SD85_13635 SM00257 Lysin motif SD85_13680 SM01317 SD85_13680 SD85_13780 SM00257 Lysin motif SD85_13790 SM01004 Delta-aminolevulinic acid dehydratase SD85_13825 SM00382 ATPases associated with a variety of cellular activities SD85_13825 SM00464 Found in ATP-dependent protease La (LON) SD85_13830 SM00382 ATPases associated with a variety of cellular activities SD85_13835 SM00382 ATPases associated with a variety of cellular activities SD85_13835 SM00994 ClpX C4-type zinc finger SD85_13835 SM01086 C-terminal, D2-small domain, of ClpB protein SD85_13860 SM01329 SD85_13860 SD85_13865 SM00917 LeuA allosteric (dimerisation) domain SD85_13895 SM00612 SD85_13895 SD85_13925 SM00909 Sporulation and spore germination SD85_13935 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_13940 SM00421 helix_turn_helix, Lux Regulon SD85_13980 SM00465 GIY-YIG type nucleases (URI domain) SD85_13990 SM00813 Alpha-L-arabinofuranosidase C-terminus SD85_13995 SM00893 Electron transfer flavoprotein domain SD85_14000 SM00893 Electron transfer flavoprotein domain SD85_14025 SM00463 Small MutS-related domain SD85_14025 SM00533 DNA-binding domain of DNA mismatch repair MUTS family SD85_14025 SM00534 ATPase domain of DNA mismatch repair MUTS family SD85_14030 SM00278 Helix-hairpin-helix DNA-binding motif class 1 SD85_14030 SM00481 DNA polymerase alpha chain like domain SD85_14030 SM00483 DNA polymerase X family SD85_14050 SM00873 B3/4 domain SD85_14050 SM00874 tRNA synthetase B5 domain SD85_14050 SM00896 Ferredoxin-fold anticodon binding domain SD85_14060 SM00967 RNA 2'-O ribose methyltransferase substrate binding SD85_14110 SM00813 Alpha-L-arabinofuranosidase C-terminus SD85_14140 SM01007 Class II Aldolase and Adducin N-terminal domain SD85_14210 SM00448 cheY-homologous receiver domain SD85_14210 SM00850 LytTr DNA-binding domain SD85_14215 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SD85_14215 SM00387 Histidine kinase-like ATPases SD85_14225 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SD85_14240 SM00382 ATPases associated with a variety of cellular activities SD85_14260 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SD85_14295 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain SD85_14295 SM01232 SD85_14295 SD85_14300 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs SD85_14300 SM00474 3'-5' exonuclease SD85_14300 SM00475 5'-3' exonuclease SD85_14300 SM00482 DNA polymerase A domain SD85_14305 SM00091 PAS domain SD85_14305 SM00387 Histidine kinase-like ATPases SD85_14305 SM00388 His Kinase A (phosphoacceptor) domain SD85_14310 SM00448 cheY-homologous receiver domain SD85_14310 SM00862 Transcriptional regulatory protein, C terminal SD85_14320 SM01329 SD85_14320 SD85_14365 SM00919 Malic enzyme, NAD binding domain SD85_14365 SM01274 SD85_14365 SD85_14370 SM00481 DNA polymerase alpha chain like domain SD85_14400 SM00116 Domain in cystathionine beta-synthase and other proteins. SD85_14405 SM00849 Metallo-beta-lactamase superfamily SD85_14430 SM00852 Probable molybdopterin binding domain SD85_14490 SM00981 SD85_14490 SD85_14520 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. SD85_14525 SM00267 diguanylate cyclase SD85_14530 SM00363 S4 RNA-binding domain SD85_14530 SM01390 SD85_14530 SD85_14540 SM00363 S4 RNA-binding domain SD85_14555 SM00116 Domain in cystathionine beta-synthase and other proteins. SD85_14575 SM00354 helix_turn _helix lactose operon repressor SD85_14580 SM00830 Chorismate mutase type II SD85_14605 SM00382 ATPases associated with a variety of cellular activities SD85_14605 SM00843 SD85_14605 SD85_14640 SM00919 Malic enzyme, NAD binding domain SD85_14640 SM01274 SD85_14640 SD85_14645 SM00849 Metallo-beta-lactamase superfamily SD85_14665 SM00642 Alpha-amylase domain SD85_14670 SM00046 Diacylglycerol kinase catalytic domain (presumed) SD85_14705 SM00382 ATPases associated with a variety of cellular activities SD85_14710 SM00420 helix_turn_helix, Deoxyribose operon repressor SD85_14715 SM00363 S4 RNA-binding domain SD85_14765 SM00342 helix_turn_helix, arabinose operon control protein SD85_14790 SM00729 Elongator protein 3, MiaB family, Radical SAM SD85_14790 SM00876 Biotin and Thiamin Synthesis associated domain SD85_14825 SM00354 helix_turn _helix lactose operon repressor SD85_14850 SM00450 Rhodanese Homology Domain SD85_14865 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SD85_14865 SM00091 PAS domain SD85_14885 SM00382 ATPases associated with a variety of cellular activities SD85_14890 SM00387 Histidine kinase-like ATPases SD85_14895 SM00448 cheY-homologous receiver domain SD85_14895 SM00862 Transcriptional regulatory protein, C terminal SD85_14905 SM00382 ATPases associated with a variety of cellular activities SD85_14920 SM00382 ATPases associated with a variety of cellular activities SD85_14925 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_14940 SM00729 Elongator protein 3, MiaB family, Radical SAM SD85_15000 SM00382 ATPases associated with a variety of cellular activities SD85_15050 SM01234 SD85_15050 SD85_15055 SM00947 Carbonic anhydrase SD85_15090 SM00382 ATPases associated with a variety of cellular activities SD85_15100 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain SD85_15140 SM00984 UDP binding domain SD85_15200 SM00642 Alpha-amylase domain SD85_15340 SM00244 prohibitin homologues SD85_15395 SM00047 Lysozyme subfamily 2 SD85_15445 SM00420 helix_turn_helix, Deoxyribose operon repressor SD85_15445 SM01134 SD85_15445 SD85_15450 SM01007 Class II Aldolase and Adducin N-terminal domain SD85_15455 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SD85_15455 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SD85_15455 SM00319 Homologues of the ligand binding domain of Tar SD85_15460 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SD85_15460 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SD85_15460 SM00319 Homologues of the ligand binding domain of Tar SD85_15465 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SD85_15465 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SD85_15465 SM00319 Homologues of the ligand binding domain of Tar SD85_15470 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). SD85_15470 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SD85_15470 SM00319 Homologues of the ligand binding domain of Tar SD85_15495 SM00642 Alpha-amylase domain SD85_15510 SM01091 Transporter associated domain SD85_15565 SM00316 Ribosomal protein S1-like RNA-binding domain SD85_15575 SM00344 helix_turn_helix ASNC type SD85_15595 SM00387 Histidine kinase-like ATPases SD85_15595 SM00388 His Kinase A (phosphoacceptor) domain SD85_15600 SM01298 SD85_15600 SD85_15605 SM00479 SD85_15605 SD85_15635 SM00091 PAS domain SD85_15635 SM00387 Histidine kinase-like ATPases SD85_15640 SM00448 cheY-homologous receiver domain SD85_15695 SM00421 helix_turn_helix, Lux Regulon SD85_15695 SM00448 cheY-homologous receiver domain SD85_15700 SM00387 Histidine kinase-like ATPases SD85_15725 SM00052 Putative diguanylate phosphodiesterase SD85_15770 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SD85_15815 SM01002 Alanine dehydrogenase/PNT, C-terminal domain SD85_15815 SM01003 Alanine dehydrogenase/PNT, N-terminal domain SD85_15825 SM00923 MbtH-like protein SD85_15830 SM00823 Phosphopantetheine attachment site SD85_15830 SM00824 Thioesterase SD85_15915 SM01240 SD85_15915 SD85_15930 SM00382 ATPases associated with a variety of cellular activities SD85_16045 SM00729 Elongator protein 3, MiaB family, Radical SAM SD85_16130 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain SD85_16175 SM00382 ATPases associated with a variety of cellular activities SD85_16180 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_16180 SM00866 SD85_16180 SD85_16210 SM00465 GIY-YIG type nucleases (URI domain) SD85_16235 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor SD85_16260 SM00382 ATPases associated with a variety of cellular activities SD85_16285 SM00382 ATPases associated with a variety of cellular activities SD85_16285 SM00930 SD85_16285 SD85_16300 SM00493 SD85_16300 SD85_16355 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_16385 SM00382 ATPases associated with a variety of cellular activities SD85_16410 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SD85_16415 SM00448 cheY-homologous receiver domain SD85_16415 SM00862 Transcriptional regulatory protein, C terminal SD85_16420 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SD85_16420 SM00387 Histidine kinase-like ATPases SD85_16420 SM00388 His Kinase A (phosphoacceptor) domain SD85_16460 SM00421 helix_turn_helix, Lux Regulon SD85_16460 SM00448 cheY-homologous receiver domain SD85_16465 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SD85_16465 SM00387 Histidine kinase-like ATPases SD85_16500 SM00382 ATPases associated with a variety of cellular activities SD85_16530 SM00387 Histidine kinase-like ATPases SD85_16530 SM00388 His Kinase A (phosphoacceptor) domain SD85_16535 SM00448 cheY-homologous receiver domain SD85_16535 SM00862 Transcriptional regulatory protein, C terminal SD85_16555 SM00835 Cupin SD85_16570 SM00382 ATPases associated with a variety of cellular activities SD85_16580 SM00382 ATPases associated with a variety of cellular activities SD85_16725 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_16725 SM00895 SD85_16725 SD85_16765 SM00316 Ribosomal protein S1-like RNA-binding domain SD85_16765 SM00357 Cold shock protein domain SD85_16765 SM00955 SD85_16765 SD85_16785 SM00530 Helix-turn-helix XRE-family like proteins SD85_16790 SM00530 Helix-turn-helix XRE-family like proteins SD85_16795 SM00530 Helix-turn-helix XRE-family like proteins SD85_16805 SM00387 Histidine kinase-like ATPases SD85_16805 SM00388 His Kinase A (phosphoacceptor) domain SD85_16810 SM00448 cheY-homologous receiver domain SD85_16810 SM00862 Transcriptional regulatory protein, C terminal SD85_16825 SM00382 ATPases associated with a variety of cellular activities SD85_16840 SM01260 SD85_16840 SD85_16845 SM00382 ATPases associated with a variety of cellular activities SD85_16870 SM00116 Domain in cystathionine beta-synthase and other proteins. SD85_16870 SM00382 ATPases associated with a variety of cellular activities SD85_16905 SM00116 Domain in cystathionine beta-synthase and other proteins. SD85_16905 SM00382 ATPases associated with a variety of cellular activities SD85_16935 SM01192 SD85_16935 SD85_16935 SM01193 SD85_16935 SD85_16960 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain SD85_16975 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_16995 SM00636 SD85_16995 SD85_17025 SM00421 helix_turn_helix, Lux Regulon SD85_17025 SM00448 cheY-homologous receiver domain SD85_17040 SM00382 ATPases associated with a variety of cellular activities SD85_17050 SM00331 Sigma factor PP2C-like phosphatases SD85_17080 SM00354 helix_turn _helix lactose operon repressor SD85_17085 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_17085 SM00895 SD85_17085 SD85_17180 SM00530 Helix-turn-helix XRE-family like proteins SD85_17220 SM00640 Glycosyl hydrolases family 32 SD85_17275 SM00947 Carbonic anhydrase SD85_17290 SM00382 ATPases associated with a variety of cellular activities SD85_17295 SM00387 Histidine kinase-like ATPases SD85_17300 SM00448 cheY-homologous receiver domain SD85_17300 SM00862 Transcriptional regulatory protein, C terminal SD85_17350 SM00028 Tetratricopeptide repeats SD85_17355 SM00382 ATPases associated with a variety of cellular activities SD85_17460 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_17460 SM00866 SD85_17460 SD85_17470 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_17485 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_17520 SM00382 ATPases associated with a variety of cellular activities SD85_17525 SM00487 DEAD-like helicases superfamily SD85_17525 SM00490 helicase superfamily c-terminal domain SD85_17550 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SD85_17560 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SD85_17560 SM00245 tail specific protease SD85_17570 SM00382 ATPases associated with a variety of cellular activities SD85_17585 SM00937 SD85_17585 SD85_17590 SM00957 SecA DEAD-like domain SD85_17590 SM00958 SecA preprotein cross-linking domain SD85_17680 SM00487 DEAD-like helicases superfamily SD85_17680 SM00490 helicase superfamily c-terminal domain SD85_17690 SM00421 helix_turn_helix, Lux Regulon SD85_17690 SM00448 cheY-homologous receiver domain SD85_17695 SM00387 Histidine kinase-like ATPases SD85_17735 SM00984 UDP binding domain SD85_17760 SM00646 SD85_17760 SD85_17805 SM00382 ATPases associated with a variety of cellular activities SD85_17875 SM00047 Lysozyme subfamily 2 SD85_17875 SM00287 Bacterial SH3 domain homologues SD85_17930 SM00854 Bacterial capsule synthesis protein PGA_cap SD85_17945 SM00354 helix_turn _helix lactose operon repressor SD85_17960 SM00382 ATPases associated with a variety of cellular activities SD85_17975 SM00287 Bacterial SH3 domain homologues SD85_18015 SM00903 Flavin reductase like domain SD85_18030 SM00344 helix_turn_helix ASNC type SD85_18065 SM00342 helix_turn_helix, arabinose operon control protein SD85_18110 SM00984 UDP binding domain SD85_18140 SM00487 DEAD-like helicases superfamily SD85_18140 SM00490 helicase superfamily c-terminal domain SD85_18150 SM00420 helix_turn_helix, Deoxyribose operon repressor SD85_18150 SM01134 SD85_18150 SD85_18180 SM00448 cheY-homologous receiver domain SD85_18180 SM00862 Transcriptional regulatory protein, C terminal SD85_18185 SM00387 Histidine kinase-like ATPases SD85_18185 SM00388 His Kinase A (phosphoacceptor) domain SD85_18185 SM00448 cheY-homologous receiver domain SD85_18200 SM00028 Tetratricopeptide repeats SD85_18225 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_18235 SM00710 Parallel beta-helix repeats SD85_18235 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses SD85_18265 SM00938 Nitrogen regulatory protein P-II SD85_18270 SM00014 Acid phosphatase homologues SD85_18305 SM00155 Phospholipase D. Active site motifs. SD85_18310 SM00422 helix_turn_helix, mercury resistance SD85_18345 SM00382 ATPases associated with a variety of cellular activities SD85_18350 SM00382 ATPases associated with a variety of cellular activities SD85_18380 SM00028 Tetratricopeptide repeats SD85_18385 SM00729 Elongator protein 3, MiaB family, Radical SAM SD85_18400 SM00327 von Willebrand factor (vWF) type A domain SD85_18410 SM00327 von Willebrand factor (vWF) type A domain SD85_18445 SM00382 ATPases associated with a variety of cellular activities SD85_18510 SM00226 Low molecular weight phosphatase family SD85_18550 SM00937 SD85_18550 SD85_18570 SM00919 Malic enzyme, NAD binding domain SD85_18570 SM01274 SD85_18570 SD85_18585 SM00357 Cold shock protein domain SD85_18585 SM00382 ATPases associated with a variety of cellular activities SD85_18585 SM00959 Rho termination factor, N-terminal domain SD85_18615 SM00448 cheY-homologous receiver domain SD85_18645 SM00155 Phospholipase D. Active site motifs. SD85_18665 SM00382 ATPases associated with a variety of cellular activities SD85_18670 SM00155 Phospholipase D. Active site motifs. SD85_18695 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SD85_18710 SM00100 Cyclic nucleotide-monophosphate binding domain SD85_18710 SM00419 helix_turn_helix, cAMP Regulatory protein SD85_18720 SM00836 DALR anticodon binding domain SD85_18720 SM01016 Arginyl tRNA synthetase N terminal dom SD85_18735 SM00729 Elongator protein 3, MiaB family, Radical SAM SD85_18745 SM00382 ATPases associated with a variety of cellular activities SD85_18780 SM00028 Tetratricopeptide repeats SD85_18820 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_18825 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain SD85_18840 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. SD85_18935 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase SD85_18975 SM00858 SD85_18975 SD85_19030 SM00986 Uracil DNA glycosylase superfamily SD85_19030 SM00987 UreE urease accessory protein, C-terminal domain SD85_19065 SM00640 Glycosyl hydrolases family 32 SD85_19080 SM01061 CAT RNA binding domain SD85_19230 SM00382 ATPases associated with a variety of cellular activities SD85_19270 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase SD85_19300 SM01061 CAT RNA binding domain SD85_19315 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_19320 SM00363 S4 RNA-binding domain SD85_19330 SM00954 Region found in RelA / SpoT proteins SD85_19415 SM01060 SD85_19415 SD85_19430 SM00382 ATPases associated with a variety of cellular activities SD85_19465 SM00382 ATPases associated with a variety of cellular activities SD85_19470 SM00382 ATPases associated with a variety of cellular activities SD85_19505 SM00635 Bacterial Ig-like domain 2 SD85_19515 SM00382 ATPases associated with a variety of cellular activities SD85_19580 SM00822 SD85_19580 SD85_19585 SM00882 Coenzyme A transferase SD85_19590 SM00882 Coenzyme A transferase SD85_19625 SM01060 SD85_19625 SD85_19655 SM01061 CAT RNA binding domain SD85_19670 SM00487 DEAD-like helicases superfamily SD85_19670 SM00490 helicase superfamily c-terminal domain SD85_19900 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain SD85_19910 SM01133 SD85_19910 SD85_19940 SM00382 ATPases associated with a variety of cellular activities SD85_19950 SM00062 Bacterial periplasmic substrate-binding proteins SD85_20020 SM00382 ATPases associated with a variety of cellular activities SD85_20025 SM00387 Histidine kinase-like ATPases SD85_20030 SM00448 cheY-homologous receiver domain SD85_20030 SM00862 Transcriptional regulatory protein, C terminal SD85_20085 SM00420 helix_turn_helix, Deoxyribose operon repressor SD85_20085 SM01134 SD85_20085 SD85_20110 SM00387 Histidine kinase-like ATPases SD85_20165 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_20195 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_20195 SM00895 SD85_20195 SD85_20210 SM01350 SD85_20210 SD85_20240 SM00345 helix_turn_helix gluconate operon transcriptional repressor SD85_20240 SM00866 SD85_20240 SD85_20340 SM00091 PAS domain SD85_20340 SM00382 ATPases associated with a variety of cellular activities SD85_20350 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. SD85_20355 SM00849 Metallo-beta-lactamase superfamily SD85_20370 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) SD85_20370 SM00091 PAS domain SD85_20370 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain SD85_20370 SM00387 Histidine kinase-like ATPases SD85_20370 SM00388 His Kinase A (phosphoacceptor) domain SD85_20375 SM00448 cheY-homologous receiver domain SD85_20375 SM00862 Transcriptional regulatory protein, C terminal SD85_20400 SM00788 Adenylosuccinate synthetase SD85_20410 SM00382 ATPases associated with a variety of cellular activities SD85_20450 SM00267 diguanylate cyclase SD85_20475 SM01131 SD85_20475 SD85_20525 SM00849 Metallo-beta-lactamase superfamily SD85_20540 SM00347 helix_turn_helix multiple antibiotic resistance protein SD85_20570 SM01266 SD85_20570 SD85_20580 SM00354 helix_turn _helix lactose operon repressor SD85_20610 SM00926 Molybdopterin oxidoreductase Fe4S4 domain SD85_20630 SM00470 ParB-like nuclease domain SD85_20645 SM00470 ParB-like nuclease domain SD85_20655 SM01228 SD85_20655 SD85_20665 SM00393 Putative single-stranded nucleic acids-binding domain SD85_20665 SM01245 SD85_20665