locus-tag class description GYO_0001 PF11638 DnaA N-terminal domain GYO_0001 PF00308 Bacterial dnaA protein GYO_0001 PF08299 Bacterial dnaA protein helix-turn-helix GYO_0002 PF00712 DNA polymerase III beta subunit, N-terminal domain GYO_0002 PF02768 DNA polymerase III beta subunit, C-terminal domain GYO_0002 PF02767 DNA polymerase III beta subunit, central domain GYO_0004 PF02463 RecF/RecN/SMC N terminal domain GYO_0005 PF04025 Domain of unknown function (DUF370) GYO_0006 PF00986 DNA gyrase B subunit, carboxyl terminus GYO_0006 PF01751 Toprim domain GYO_0006 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GYO_0006 PF00204 DNA gyrase B GYO_0008 PF03989 DNA gyrase C-terminal domain, beta-propeller GYO_0008 PF00521 DNA gyrase/topoisomerase IV, subunit A GYO_0012 PF14175 YaaC-like Protein GYO_0013 PF00571 CBS domain GYO_0013 PF00478 IMP dehydrogenase / GMP reductase domain GYO_0014 PF07943 Penicillin-binding protein 5, C-terminal domain GYO_0014 PF00768 D-alanyl-D-alanine carboxypeptidase GYO_0015 PF01680 SOR/SNZ family GYO_0016 PF01174 SNO glutamine amidotransferase family GYO_0017 PF02403 Seryl-tRNA synthetase N-terminal domain GYO_0017 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) GYO_0019 PF01712 Deoxynucleoside kinase GYO_0020 PF01712 Deoxynucleoside kinase GYO_0022 PF00857 Isochorismatase family GYO_0023 PF14437 MafB19-like deaminase GYO_0024 PF12169 DNA polymerase III subunits gamma and tau domain III GYO_0025 PF02575 YbaB/EbfC DNA-binding family GYO_0026 PF13662 Toprim domain GYO_0026 PF02132 RecR protein GYO_0027 PF10704 Protein of unknown function (DUF2508) GYO_0028 PF07441 SigmaK-factor processing regulatory protein BofA GYO_0033 PF10764 Inhibitor of sigma-G Gin GYO_0034 PF10112 5-bromo-4-chloroindolyl phosphate hydrolysis protein GYO_0035 PF05816 Toxic anion resistance protein (TelA) GYO_0036 PF01276 Orn/Lys/Arg decarboxylase, major domain GYO_0036 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain GYO_0037 PF02223 Thymidylate kinase GYO_0038 PF06153 Cyclic-di-AMP receptor GYO_0039 PF03885 Protein of unknown function (DUF327) GYO_0040 PF09115 DNA polymerase III, delta subunit, C terminal GYO_0041 PF04468 PSP1 C-terminal conserved region GYO_0042 PF06156 Initiation control protein YabA GYO_0043 PF05175 Methyltransferase small domain GYO_0044 PF01541 GIY-YIG catalytic domain GYO_0045 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases GYO_0046 PF18277 AbrB C-terminal domain GYO_0046 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin GYO_0047 PF08264 Anticodon-binding domain of tRNA GYO_0047 PF09334 tRNA synthetases class I (M) GYO_0047 PF01588 Putative tRNA binding domain GYO_0048 PF01026 TatD related DNase GYO_0049 PF03990 G5-linked-Ubiquitin-like domain GYO_0049 PF06725 3D domain GYO_0049 PF07501 G5 domain GYO_0050 PF13331 Domain of unknown function (DUF4093) GYO_0050 PF13662 Toprim domain GYO_0051 PF00398 Ribosomal RNA adenine dimethylase GYO_0052 PF05582 YabG peptidase U57 GYO_0053 PF06257 Biofilm formation stimulator VEG GYO_0054 PF00269 Small, acid-soluble spore proteins, alpha/beta type GYO_0055 PF08544 GHMP kinases C terminal GYO_0055 PF00288 GHMP kinases N terminal domain GYO_0056 PF00156 Phosphoribosyl transferase domain GYO_0056 PF09182 Bacterial purine repressor, N-terminal GYO_0057 PF01042 Endoribonuclease L-PSP GYO_0058 PF04026 SpoVG GYO_0062 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase GYO_0062 PF14572 Phosphoribosyl synthetase-associated domain GYO_0063 PF01386 Ribosomal L25p family GYO_0063 PF14693 Ribosomal protein TL5, C-terminal domain GYO_0064 PF01195 Peptidyl-tRNA hydrolase GYO_0065 PF10955 Protein of unknown function (DUF2757) GYO_0066 PF03461 TRCF domain GYO_0066 PF02559 CarD-like/TRCF domain GYO_0066 PF00270 DEAD/DEAH box helicase GYO_0066 PF17757 UvrB interaction domain GYO_0066 PF00271 Helicase conserved C-terminal domain GYO_0067 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin GYO_0067 PF15714 Stage V sporulation protein T C-terminal, transcription factor GYO_0068 PF01943 Polysaccharide biosynthesis protein GYO_0068 PF14667 Polysaccharide biosynthesis C-terminal domain GYO_0069 PF03819 MazG nucleotide pyrophosphohydrolase domain GYO_0069 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases GYO_0070 PF01479 S4 domain GYO_0071 PF07873 YabP family GYO_0072 PF09578 Spore cortex protein YabQ (Spore_YabQ) GYO_0073 PF04977 Septum formation initiator GYO_0074 PF00575 S1 RNA binding domain GYO_0078 PF00092 von Willebrand factor type A domain GYO_0079 PF00069 Protein kinase domain GYO_0080 PF01171 PP-loop family GYO_0080 PF09179 TilS substrate binding domain GYO_0080 PF11734 TilS substrate C-terminal domain GYO_0082 PF01434 Peptidase family M41 GYO_0082 PF06480 FtsH Extracellular GYO_0082 PF17862 AAA+ lid domain GYO_0082 PF00004 ATPase family associated with various cellular activities (AAA) GYO_0083 PF03309 Type III pantothenate kinase GYO_0084 PF01430 Hsp33 protein GYO_0085 PF13145 PPIC-type PPIASE domain GYO_0086 PF00291 Pyridoxal-phosphate dependent enzyme GYO_0089 PF00117 Glutamine amidotransferase class-I GYO_0090 PF01063 Amino-transferase class IV GYO_0091 PF00809 Pterin binding enzyme GYO_0092 PF02152 Dihydroneopterin aldolase GYO_0093 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) GYO_0094 PF01381 Helix-turn-helix GYO_0095 PF01207 Dihydrouridine synthase (Dus) GYO_0096 PF01336 OB-fold nucleic acid binding domain GYO_0096 PF00152 tRNA synthetases class II (D, K and N) GYO_0109 PF05848 CtsR N-terminal HTH domain GYO_0109 PF17727 CtsR C-terminal dimerization domain GYO_0110 PF02151 UvrB/uvrC motif GYO_0111 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain GYO_0112 PF02861 Clp amino terminal domain, pathogenicity island component GYO_0112 PF00004 ATPase family associated with various cellular activities (AAA) GYO_0112 PF07724 AAA domain (Cdc48 subfamily) GYO_0112 PF17871 AAA lid domain GYO_0112 PF10431 C-terminal, D2-small domain, of ClpB protein GYO_0113 PF18073 Rubredoxin metal binding domain GYO_0114 PF10635 DisA bacterial checkpoint controller linker region GYO_0114 PF02457 DisA bacterial checkpoint controller nucleotide-binding GYO_0116 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GYO_0117 PF02542 YgbB family GYO_0118 PF00749 tRNA synthetases class I (E and Q), catalytic domain GYO_0121 PF00132 Bacterial transferase hexapeptide (six repeats) GYO_0121 PF06426 Serine acetyltransferase, N-terminal GYO_0122 PF09190 DALR domain GYO_0122 PF01406 tRNA synthetases class I (C) catalytic domain GYO_0123 PF00636 Ribonuclease III domain GYO_0124 PF00588 SpoU rRNA Methylase family GYO_0124 PF08032 RNA 2'-O ribose methyltransferase substrate binding GYO_0125 PF05991 YacP-like NYN domain GYO_0126 PF08281 Sigma-70, region 4 GYO_0126 PF04542 Sigma-70 region 2 GYO_0127 PF00584 SecE/Sec61-gamma subunits of protein translocation complex GYO_0128 PF02357 Transcription termination factor nusG GYO_0128 PF00467 KOW motif GYO_0129 PF00298 Ribosomal protein L11, RNA binding domain GYO_0129 PF03946 Ribosomal protein L11, N-terminal domain GYO_0130 PF00687 Ribosomal protein L1p/L10e family GYO_0131 PF00466 Ribosomal protein L10 GYO_0132 PF00542 Ribosomal protein L7/L12 C-terminal domain GYO_0132 PF16320 Ribosomal protein L7/L12 dimerisation domain GYO_0133 PF05175 Methyltransferase small domain GYO_0134 PF10385 RNA polymerase beta subunit external 1 domain GYO_0134 PF04560 RNA polymerase Rpb2, domain 7 GYO_0134 PF04563 RNA polymerase beta subunit GYO_0134 PF00562 RNA polymerase Rpb2, domain 6 GYO_0134 PF04565 RNA polymerase Rpb2, domain 3 GYO_0134 PF04561 RNA polymerase Rpb2, domain 2 GYO_0135 PF04998 RNA polymerase Rpb1, domain 5 GYO_0135 PF04997 RNA polymerase Rpb1, domain 1 GYO_0135 PF05000 RNA polymerase Rpb1, domain 4 GYO_0135 PF00623 RNA polymerase Rpb1, domain 2 GYO_0135 PF04983 RNA polymerase Rpb1, domain 3 GYO_0136 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family GYO_0137 PF00164 Ribosomal protein S12/S23 GYO_0138 PF00177 Ribosomal protein S7p/S5e GYO_0139 PF14492 Elongation Factor G, domain II GYO_0139 PF00679 Elongation factor G C-terminus GYO_0139 PF03144 Elongation factor Tu domain 2 GYO_0139 PF00009 Elongation factor Tu GTP binding domain GYO_0139 PF03764 Elongation factor G, domain IV GYO_0140 PF00009 Elongation factor Tu GTP binding domain GYO_0140 PF03144 Elongation factor Tu domain 2 GYO_0140 PF03143 Elongation factor Tu C-terminal domain GYO_0141 PF12146 Serine aminopeptidase, S33 GYO_0142 PF00338 Ribosomal protein S10p/S20e GYO_0143 PF00297 Ribosomal protein L3 GYO_0144 PF00573 Ribosomal protein L4/L1 family GYO_0145 PF00276 Ribosomal protein L23 GYO_0146 PF03947 Ribosomal Proteins L2, C-terminal domain GYO_0146 PF00181 Ribosomal Proteins L2, RNA binding domain GYO_0147 PF00237 Ribosomal protein L22p/L17e GYO_0148 PF07650 KH domain GYO_0148 PF00189 Ribosomal protein S3, C-terminal domain GYO_0149 PF00252 Ribosomal protein L16p/L10e GYO_0150 PF00831 Ribosomal L29 protein GYO_0151 PF00366 Ribosomal protein S17 GYO_0152 PF00238 Ribosomal protein L14p/L23e GYO_0153 PF00467 KOW motif GYO_0153 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 GYO_0154 PF00673 ribosomal L5P family C-terminus GYO_0154 PF00281 Ribosomal protein L5 GYO_0155 PF00253 Ribosomal protein S14p/S29e GYO_0156 PF00410 Ribosomal protein S8 GYO_0157 PF00347 Ribosomal protein L6 GYO_0158 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast GYO_0159 PF03719 Ribosomal protein S5, C-terminal domain GYO_0159 PF00333 Ribosomal protein S5, N-terminal domain GYO_0160 PF00327 Ribosomal protein L30p/L7e GYO_0161 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A GYO_0162 PF00344 SecY translocase GYO_0163 PF05191 Adenylate kinase, active site lid GYO_0164 PF00557 Metallopeptidase family M24 GYO_0166 PF00444 Ribosomal protein L36 GYO_0167 PF00416 Ribosomal protein S13/S18 GYO_0168 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain GYO_0168 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain GYO_0168 PF01000 RNA polymerase Rpb3/RpoA insert domain GYO_0169 PF01196 Ribosomal protein L17 GYO_0170 PF00005 ABC transporter GYO_0173 PF02361 Cobalt transport protein GYO_0174 PF01416 tRNA pseudouridine synthase GYO_0175 PF00572 Ribosomal protein L13 GYO_0176 PF00380 Ribosomal protein S9/S16 GYO_0178 PF08241 Methyltransferase domain GYO_0179 PF10730 Protein of unknown function (DUF2521) GYO_0180 PF01520 N-acetylmuramoyl-L-alanine amidase GYO_0181 PF10609 NUBPL iron-transfer P-loop NTPase GYO_0182 PF17898 Spore germination GerD central core domain GYO_0183 PF14089 KinB-signalling pathway activation in sporulation GYO_0184 PF01522 Polysaccharide deacetylase GYO_0190 PF06114 IrrE N-terminal-like domain GYO_0192 PF01381 Helix-turn-helix GYO_0202 PF03796 DnaB-like helicase C terminal domain GYO_0202 PF00772 DnaB-like helicase N terminal domain GYO_0203 PF05866 Endodeoxyribonuclease RusA GYO_0210 PF00724 NADH:flavin oxidoreductase / NADH oxidase family GYO_0220 PF00145 C-5 cytosine-specific DNA methylase GYO_0223 PF04466 Phage terminase large subunit GYO_0223 PF17288 Terminase RNAseH like domain GYO_0224 PF04860 Phage portal protein GYO_0225 PF04233 Phage Mu protein F like protein GYO_0227 PF14550 Putative phage serine protease XkdF GYO_0228 PF05065 Phage capsid family GYO_0229 PF14553 YqbF, hypothetical protein domain GYO_0230 PF11436 Protein of unknown function (DUF3199) GYO_0231 PF12206 Domain of unknown function (DUF3599) GYO_0232 PF04883 Bacteriophage HK97-gp10, putative tail-component GYO_0235 PF17482 Phage tail sheath C-terminal domain GYO_0235 PF04984 Phage tail sheath protein subtilisin-like domain GYO_0235 PF17481 Phage tail sheath protein beta-sandwich domain GYO_0236 PF09393 Phage tail tube protein GYO_0237 PF08890 Phage XkdN-like tail assembly chaperone protein, TAC GYO_0239 PF01464 Transglycosylase SLT domain GYO_0240 PF01476 LysM domain GYO_0242 PF10844 Protein of unknown function (DUF2577) GYO_0243 PF10934 Protein of unknown function (DUF2634) GYO_0244 PF04865 Baseplate J-like protein GYO_0245 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) GYO_0248 PF09636 XkdW protein GYO_0249 PF09693 Phage uncharacterised protein (Phage_XkdX) GYO_0251 PF05105 Bacteriophage holin family GYO_0252 PF01476 LysM domain GYO_0252 PF01510 N-acetylmuramoyl-L-alanine amidase GYO_0252 PF01471 Putative peptidoglycan binding domain GYO_0254 PF14449 Pre-toxin TG GYO_0254 PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues GYO_0254 PF04740 LXG domain of WXG superfamily GYO_0255 PF18801 response regulator aspartate phosphatase H, N terminal GYO_0255 PF13176 Tetratricopeptide repeat GYO_0269 PF06114 IrrE N-terminal-like domain GYO_0271 PF01381 Helix-turn-helix GYO_0281 PF03796 DnaB-like helicase C terminal domain GYO_0281 PF00772 DnaB-like helicase N terminal domain GYO_0282 PF05866 Endodeoxyribonuclease RusA GYO_0289 PF00724 NADH:flavin oxidoreductase / NADH oxidase family GYO_0299 PF00145 C-5 cytosine-specific DNA methylase GYO_0302 PF17288 Terminase RNAseH like domain GYO_0302 PF04466 Phage terminase large subunit GYO_0303 PF04860 Phage portal protein GYO_0304 PF04233 Phage Mu protein F like protein GYO_0306 PF14550 Putative phage serine protease XkdF GYO_0307 PF05065 Phage capsid family GYO_0308 PF14553 YqbF, hypothetical protein domain GYO_0309 PF11436 Protein of unknown function (DUF3199) GYO_0310 PF12206 Domain of unknown function (DUF3599) GYO_0311 PF04883 Bacteriophage HK97-gp10, putative tail-component GYO_0314 PF04984 Phage tail sheath protein subtilisin-like domain GYO_0314 PF17482 Phage tail sheath C-terminal domain GYO_0314 PF17481 Phage tail sheath protein beta-sandwich domain GYO_0315 PF09393 Phage tail tube protein GYO_0316 PF08890 Phage XkdN-like tail assembly chaperone protein, TAC GYO_0318 PF01464 Transglycosylase SLT domain GYO_0319 PF01476 LysM domain GYO_0321 PF10844 Protein of unknown function (DUF2577) GYO_0322 PF10934 Protein of unknown function (DUF2634) GYO_0323 PF04865 Baseplate J-like protein GYO_0324 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) GYO_0327 PF09636 XkdW protein GYO_0328 PF09693 Phage uncharacterised protein (Phage_XkdX) GYO_0330 PF05105 Bacteriophage holin family GYO_0331 PF01471 Putative peptidoglycan binding domain GYO_0331 PF01510 N-acetylmuramoyl-L-alanine amidase GYO_0331 PF01476 LysM domain GYO_0333 PF14449 Pre-toxin TG GYO_0333 PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues GYO_0333 PF04740 LXG domain of WXG superfamily GYO_0334 PF18801 response regulator aspartate phosphatase H, N terminal GYO_0334 PF13176 Tetratricopeptide repeat GYO_0345 PF07690 Major Facilitator Superfamily GYO_0346 PF00202 Aminotransferase class-III GYO_0348 PF08240 Alcohol dehydrogenase GroES-like domain GYO_0348 PF00107 Zinc-binding dehydrogenase GYO_0349 PF00916 Sulfate permease family GYO_0349 PF01740 STAS domain GYO_0350 PF01758 Sodium Bile acid symporter family GYO_0351 PF00756 Putative esterase GYO_0352 PF01032 FecCD transport family GYO_0353 PF01032 FecCD transport family GYO_0354 PF01497 Periplasmic binding protein GYO_0355 PF12833 Helix-turn-helix domain GYO_0355 PF01497 Periplasmic binding protein GYO_0357 PF07075 Protein of unknown function (DUF1343) GYO_0358 PF00933 Glycosyl hydrolase family 3 N terminal domain GYO_0358 PF01915 Glycosyl hydrolase family 3 C-terminal domain GYO_0359 PF00144 Beta-lactamase GYO_0360 PF00367 phosphotransferase system, EIIB GYO_0360 PF02378 Phosphotransferase system, EIIC GYO_0361 PF01380 SIS domain GYO_0361 PF01418 Helix-turn-helix domain, rpiR family GYO_0362 PF01380 SIS domain GYO_0364 PF04463 Protein of unknown function (DUF523) GYO_0370 PF08281 Sigma-70, region 4 GYO_0370 PF04542 Sigma-70 region 2 GYO_0371 PF13490 Putative zinc-finger GYO_0372 PF02457 DisA bacterial checkpoint controller nucleotide-binding GYO_0373 PF07949 YbbR-like protein GYO_0374 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III GYO_0374 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain GYO_0374 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I GYO_0374 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II GYO_0375 PF01380 SIS domain GYO_0376 PF00361 Proton-conducting membrane transporter GYO_0376 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus GYO_0377 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) GYO_0380 PF10057 Uncharacterized conserved protein (DUF2294) GYO_0383 PF07690 Major Facilitator Superfamily GYO_0386 PF13411 MerR HTH family regulatory protein GYO_0387 PF00561 alpha/beta hydrolase fold GYO_0388 PF00486 Transcriptional regulatory protein, C terminal GYO_0388 PF00072 Response regulator receiver domain GYO_0389 PF00512 His Kinase A (phospho-acceptor) domain GYO_0389 PF00672 HAMP domain GYO_0392 PF00069 Protein kinase domain GYO_0394 PF16226 Domain of unknown function (DUF4885) GYO_0395 PF00324 Amino acid permease GYO_0396 PF17334 Minor curli fiber component A GYO_0397 PF17340 Family of unknown function (DUF5370) GYO_0398 PF00905 Penicillin binding protein transpeptidase domain GYO_0400 PF00067 Cytochrome P450 GYO_0402 PF02690 Na+/Pi-cotransporter GYO_0403 PF03009 Glycerophosphoryl diester phosphodiesterase family GYO_0404 PF07690 Major Facilitator Superfamily GYO_0406 PF10852 Protein of unknown function (DUF2651) GYO_0407 PF00583 Acetyltransferase (GNAT) family GYO_0407 PF01047 MarR family GYO_0408 PF07690 Major Facilitator Superfamily GYO_0410 PF08924 Domain of unknown function (DUF1906) GYO_0410 PF01471 Putative peptidoglycan binding domain GYO_0413 PF12833 Helix-turn-helix domain GYO_0413 PF02311 AraC-like ligand binding domain GYO_0417 PF00182 Chitinase class I GYO_0422 PF02222 ATP-grasp domain GYO_0423 PF00089 Trypsin GYO_0424 PF10794 Protein of unknown function (DUF2606) GYO_0425 PF12697 Alpha/beta hydrolase family GYO_0426 PF01066 CDP-alcohol phosphatidyltransferase GYO_0428 PF02666 Phosphatidylserine decarboxylase GYO_0430 PF05139 Erythromycin esterase GYO_0432 PF00375 Sodium:dicarboxylate symporter family GYO_0433 PF00367 phosphotransferase system, EIIB GYO_0433 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 GYO_0433 PF02378 Phosphotransferase system, EIIC GYO_0434 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase GYO_0436 PF07853 Protein of unknown function (DUF1648) GYO_0437 PF01063 Amino-transferase class IV GYO_0438 PF00324 Amino acid permease GYO_0439 PF02574 Homocysteine S-methyltransferase GYO_0440 PF01235 Sodium:alanine symporter family GYO_0441 PF04960 Glutaminase GYO_0443 PF08664 YcbB domain GYO_0443 PF00072 Response regulator receiver domain GYO_0445 PF00701 Dihydrodipicolinate synthetase family GYO_0446 PF00171 Aldehyde dehydrogenase family GYO_0447 PF07690 Major Facilitator Superfamily GYO_0448 PF13378 Enolase C-terminal domain-like GYO_0449 PF00392 Bacterial regulatory proteins, gntR family GYO_0449 PF07729 FCD domain GYO_0450 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus GYO_0450 PF08666 SAF domain GYO_0451 PF01636 Phosphotransferase enzyme family GYO_0452 PF15777 Tryptophan RNA-binding attenuator protein inhibitory protein GYO_0453 PF00892 EamA-like transporter family GYO_0454 PF00486 Transcriptional regulatory protein, C terminal GYO_0454 PF00072 Response regulator receiver domain GYO_0455 PF00512 His Kinase A (phospho-acceptor) domain GYO_0455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GYO_0456 PF00005 ABC transporter GYO_0458 PF10710 Protein of unknown function (DUF2512) GYO_0460 PF07486 Cell Wall Hydrolase GYO_0461 PF10138 vWA found in TerF C terminus GYO_0463 PF16655 PhoD-like phosphatase, N-terminal domain GYO_0463 PF09423 PhoD-like phosphatase GYO_0464 PF02416 mttA/Hcf106 family GYO_0465 PF00902 Sec-independent protein translocase protein (TatC) GYO_0466 PF01470 Pyroglutamyl peptidase GYO_0467 PF00266 Aminotransferase class-V GYO_0468 PF07690 Major Facilitator Superfamily GYO_0469 PF00440 Bacterial regulatory proteins, tetR family GYO_0470 PF17763 Glutaminase/Asparaginase C-terminal domain GYO_0470 PF00710 Asparaginase, N-terminal GYO_0471 PF01674 Lipase (class 2) GYO_0472 PF06271 RDD family GYO_0473 PF02810 SEC-C motif GYO_0473 PF05225 helix-turn-helix, Psq domain GYO_0474 PF14501 GHKL domain GYO_0475 PF00072 Response regulator receiver domain GYO_0475 PF04397 LytTr DNA-binding domain GYO_0476 PF00005 ABC transporter GYO_0477 PF12679 ABC-2 family transporter protein GYO_0478 PF00248 Aldo/keto reductase family GYO_0479 PF11611 Domain of unknown function (DUF4352) GYO_0479 PF17118 Domain of unknown function (DUF5105) GYO_0480 PF16244 Domain of unknown function (DUF4901) GYO_0482 PF16244 Domain of unknown function (DUF4901) GYO_0483 PF13539 D-alanyl-D-alanine carboxypeptidase GYO_0484 PF18801 response regulator aspartate phosphatase H, N terminal GYO_0486 PF00128 Alpha amylase, catalytic domain GYO_0488 PF01297 Zinc-uptake complex component A periplasmic GYO_0489 PF00005 ABC transporter GYO_0492 PF00296 Luciferase-like monooxygenase GYO_0493 PF02342 TerD domain GYO_0494 PF02342 TerD domain GYO_0495 PF02342 TerD domain GYO_0496 PF03741 Integral membrane protein TerC family GYO_0497 PF14266 Putative component of 'biosynthetic module' GYO_0498 PF05816 Toxic anion resistance protein (TelA) GYO_0499 PF07690 Major Facilitator Superfamily GYO_0500 PF07690 Major Facilitator Superfamily GYO_0502 PF00571 CBS domain GYO_0502 PF00005 ABC transporter GYO_0503 PF00528 Binding-protein-dependent transport system inner membrane component GYO_0504 PF04069 Substrate binding domain of ABC-type glycine betaine transport system GYO_0505 PF01546 Peptidase family M20/M25/M40 GYO_0505 PF07687 Peptidase dimerisation domain GYO_0506 PF03606 C4-dicarboxylate anaerobic carrier GYO_0508 PF16738 Starch-binding module 26 GYO_0508 PF00128 Alpha amylase, catalytic domain GYO_0510 PF02652 L-lactate permease GYO_0511 PF07690 Major Facilitator Superfamily GYO_0512 PF01047 MarR family GYO_0513 PF01810 LysE type translocator GYO_0514 PF08892 YqcI/YcgG family GYO_0515 PF00324 Amino acid permease GYO_0516 PF09347 Domain of unknown function (DUF1989) GYO_0517 PF02540 NAD synthase GYO_0520 PF01202 Shikimate kinase GYO_0521 PF08241 Methyltransferase domain GYO_0522 PF03466 LysR substrate binding domain GYO_0522 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GYO_0523 PF05448 Acetyl xylan esterase (AXE1) GYO_0524 PF10127 RNA repair pathway DNA polymerase beta family GYO_0525 PF01619 Proline dehydrogenase GYO_0528 PF00474 Sodium:solute symporter family GYO_0529 PF13556 PucR C-terminal helix-turn-helix domain GYO_0529 PF17853 GGDEF-like domain GYO_0530 PF09323 Domain of unknown function (DUF1980) GYO_0531 PF03773 Predicted permease GYO_0532 PF00561 alpha/beta hydrolase fold GYO_0535 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases GYO_0536 PF00355 Rieske [2Fe-2S] domain GYO_0537 PF07992 Pyridine nucleotide-disulphide oxidoreductase GYO_0537 PF04324 BFD-like [2Fe-2S] binding domain GYO_0537 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain GYO_0537 PF01077 Nitrite and sulphite reductase 4Fe-4S domain GYO_0537 PF18267 Rubredoxin NAD+ reductase C-terminal domain GYO_0538 PF01568 Molydopterin dinucleotide binding domain GYO_0538 PF00384 Molybdopterin oxidoreductase GYO_0538 PF04879 Molybdopterin oxidoreductase Fe4S4 domain GYO_0539 PF18267 Rubredoxin NAD+ reductase C-terminal domain GYO_0539 PF07992 Pyridine nucleotide-disulphide oxidoreductase GYO_0539 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain GYO_0539 PF04324 BFD-like [2Fe-2S] binding domain GYO_0540 PF07690 Major Facilitator Superfamily GYO_0541 PF02649 Type I GTP cyclohydrolase folE2 GYO_0542 PF03734 L,D-transpeptidase catalytic domain GYO_0544 PF07683 Cobalamin synthesis protein cobW C-terminal domain GYO_0544 PF02492 CobW/HypB/UreG, nucleotide-binding domain GYO_0545 PF00528 Binding-protein-dependent transport system inner membrane component GYO_0546 PF00497 Bacterial extracellular solute-binding proteins, family 3 GYO_0549 PF06271 RDD family GYO_0550 PF10925 Protein of unknown function (DUF2680) GYO_0551 PF01047 MarR family GYO_0553 PF00005 ABC transporter GYO_0554 PF00232 Glycosyl hydrolase family 1 GYO_0555 PF11033 Competence protein J (ComJ) GYO_0556 PF14040 Deoxyribonuclease NucA/NucB GYO_0557 PF00672 HAMP domain GYO_0557 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GYO_0557 PF17202 Single cache domain 3 GYO_0558 PF01380 SIS domain GYO_0559 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family GYO_0560 PF01638 HxlR-like helix-turn-helix GYO_0563 PF00550 Phosphopantetheine attachment site GYO_0563 PF00668 Condensation domain GYO_0563 PF13193 AMP-binding enzyme C-terminal domain GYO_0563 PF00501 AMP-binding enzyme GYO_0564 PF00550 Phosphopantetheine attachment site GYO_0564 PF00668 Condensation domain GYO_0564 PF00975 Thioesterase domain GYO_0564 PF13193 AMP-binding enzyme C-terminal domain GYO_0564 PF00501 AMP-binding enzyme GYO_0565 PF00975 Thioesterase domain GYO_0566 PF07690 Major Facilitator Superfamily GYO_0567 PF14317 YcxB-like protein GYO_0568 PF00892 EamA-like transporter family GYO_0569 PF00155 Aminotransferase class I and II GYO_0569 PF00392 Bacterial regulatory proteins, gntR family GYO_0570 PF01648 4'-phosphopantetheinyl transferase superfamily GYO_0573 PF13176 Tetratricopeptide repeat GYO_0573 PF18801 response regulator aspartate phosphatase H, N terminal GYO_0574 PF00005 ABC transporter GYO_0575 PF00528 Binding-protein-dependent transport system inner membrane component GYO_0576 PF00497 Bacterial extracellular solute-binding proteins, family 3 GYO_0577 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GYO_0577 PF03466 LysR substrate binding domain GYO_0578 PF02441 Flavoprotein GYO_0579 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase GYO_0582 PF00561 alpha/beta hydrolase fold GYO_0583 PF00854 POT family GYO_0584 PF13229 Right handed beta helix region GYO_0584 PF12708 Pectate lyase superfamily protein GYO_0586 PF03323 Bacillus/Clostridium GerA spore germination protein GYO_0587 PF05504 Spore germination B3/ GerAC like, C-terminal GYO_0588 PF03845 Spore germination protein GYO_0589 PF00005 ABC transporter GYO_0590 PF12704 MacB-like periplasmic core domain GYO_0590 PF02687 FtsX-like permease family GYO_0591 PF00072 Response regulator receiver domain GYO_0591 PF00486 Transcriptional regulatory protein, C terminal GYO_0592 PF00512 His Kinase A (phospho-acceptor) domain GYO_0592 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GYO_0592 PF00672 HAMP domain GYO_0593 PF18801 response regulator aspartate phosphatase H, N terminal GYO_0594 PF11131 Rap-phr extracellular signalling GYO_0595 PF00696 Amino acid kinase family GYO_0595 PF13840 ACT domain GYO_0596 PF01032 FecCD transport family GYO_0597 PF01032 FecCD transport family GYO_0598 PF00005 ABC transporter GYO_0599 PF01497 Periplasmic binding protein GYO_0600 PF07690 Major Facilitator Superfamily GYO_0601 PF00440 Bacterial regulatory proteins, tetR family GYO_0602 PF00881 Nitroreductase family GYO_0603 PF03992 Antibiotic biosynthesis monooxygenase GYO_0604 PF01022 Bacterial regulatory protein, arsR family GYO_0605 PF00392 Bacterial regulatory proteins, gntR family GYO_0605 PF00155 Aminotransferase class I and II GYO_0606 PF00202 Aminotransferase class-III GYO_0607 PF00171 Aldehyde dehydrogenase family GYO_0609 PF06800 Sugar transport protein GYO_0611 PF07987 Domain of unkown function (DUF1775) GYO_0612 PF13115 YtkA-like GYO_0612 PF04234 CopC domain GYO_0612 PF05425 Copper resistance protein D GYO_0613 PF08220 DeoR-like helix-turn-helix domain GYO_0613 PF05573 NosL GYO_0615 PF02378 Phosphotransferase system, EIIC GYO_0615 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit GYO_0616 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 GYO_0617 PF01232 Mannitol dehydrogenase Rossmann domain GYO_0617 PF08125 Mannitol dehydrogenase C-terminal domain GYO_0618 PF00180 Isocitrate/isopropylmalate dehydrogenase GYO_0619 PF01738 Dienelactone hydrolase family GYO_0620 PF07977 FabA-like domain GYO_0623 PF03746 LamB/YcsF family GYO_0624 PF01566 Natural resistance-associated macrophage protein GYO_0625 PF07286 Protein of unknown function (DUF1445) GYO_0626 PF02682 Carboxyltransferase domain, subdomain C and D GYO_0627 PF02626 Carboxyltransferase domain, subdomain A and B GYO_0628 PF09339 IclR helix-turn-helix domain GYO_0628 PF01614 Bacterial transcriptional regulator GYO_0629 PF13472 GDSL-like Lipase/Acylhydrolase family GYO_0630 PF13129 Protein of unknown function (DUF3953) GYO_0631 PF03992 Antibiotic biosynthesis monooxygenase GYO_0632 PF00905 Penicillin binding protein transpeptidase domain GYO_0632 PF05223 NTF2-like N-terminal transpeptidase domain GYO_0632 PF03717 Penicillin-binding Protein dimerisation domain GYO_0633 PF00248 Aldo/keto reductase family GYO_0634 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 GYO_0634 PF08279 HTH domain GYO_0634 PF05043 Mga helix-turn-helix domain GYO_0634 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit GYO_0634 PF00874 PRD domain GYO_0635 PF00501 AMP-binding enzyme GYO_0635 PF13193 AMP-binding enzyme C-terminal domain GYO_0636 PF13649 Methyltransferase domain GYO_0639 PF13302 Acetyltransferase (GNAT) domain GYO_0640 PF16242 Pyridoxamine 5'-phosphate oxidase like GYO_0641 PF10997 Alternate to MurJ GYO_0642 PF12823 Domain of unknown function (DUF3817) GYO_0643 PF01037 Lrp/AsnC ligand binding domain GYO_0644 PF01751 Toprim domain GYO_0644 PF01131 DNA topoisomerase GYO_0646 PF00990 Diguanylate cyclase, GGDEF domain GYO_0647 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) GYO_0649 PF03170 Bacterial cellulose synthase subunit GYO_0650 PF13520 Amino acid permease GYO_0651 PF00293 NUDIX domain GYO_0652 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GYO_0652 PF00205 Thiamine pyrophosphate enzyme, central domain GYO_0652 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GYO_0655 PF01566 Natural resistance-associated macrophage protein GYO_0656 PF04226 Transglycosylase associated protein GYO_0657 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) GYO_0658 PF12787 EcsC protein family GYO_0659 PF10685 Stress-induced bacterial acidophilic repeat motif GYO_0659 PF00477 Small hydrophilic plant seed protein GYO_0660 PF07883 Cupin domain GYO_0661 PF16291 Domain of unknown function (DUF4937 GYO_0662 PF05067 Manganese containing catalase GYO_0663 PF03480 Bacterial extracellular solute-binding protein, family 7 GYO_0664 PF17203 Single cache domain 3 GYO_0664 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GYO_0664 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain GYO_0665 PF00072 Response regulator receiver domain GYO_0665 PF08279 HTH domain GYO_0666 PF00375 Sodium:dicarboxylate symporter family GYO_0667 PF01594 AI-2E family transporter GYO_0668 PF00375 Sodium:dicarboxylate symporter family GYO_0669 PF00005 ABC transporter GYO_0672 PF02770 Acyl-CoA dehydrogenase, middle domain GYO_0672 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GYO_0672 PF08028 Acyl-CoA dehydrogenase, C-terminal domain GYO_0673 PF13040 Fur-regulated basic protein B GYO_0675 PF01545 Cation efflux family GYO_0675 PF16916 Dimerisation domain of Zinc Transporter GYO_0676 PF00085 Thioredoxin GYO_0677 PF01820 D-ala D-ala ligase N-terminus GYO_0677 PF07478 D-ala D-ala ligase C-terminus GYO_0678 PF02875 Mur ligase family, glutamate ligase domain GYO_0678 PF08245 Mur ligase middle domain GYO_0678 PF01225 Mur ligase family, catalytic domain GYO_0679 PF00270 DEAD/DEAH box helicase GYO_0679 PF00271 Helicase conserved C-terminal domain GYO_0680 PF03703 Bacterial PH domain GYO_0681 PF03703 Bacterial PH domain GYO_0682 PF01694 Rhomboid family GYO_0683 PF01648 4'-phosphopantetheinyl transferase superfamily GYO_0685 PF01168 Alanine racemase, N-terminal domain GYO_0685 PF00842 Alanine racemase, C-terminal domain GYO_0686 PF01402 Ribbon-helix-helix protein, copG family GYO_0687 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system GYO_0688 PF01740 STAS domain GYO_0688 PF08678 Rsbr N terminal GYO_0689 PF01740 STAS domain GYO_0690 PF13581 Histidine kinase-like ATPase domain GYO_0691 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain GYO_0691 PF07228 Stage II sporulation protein E (SpoIIE) GYO_0692 PF01740 STAS domain GYO_0693 PF13581 Histidine kinase-like ATPase domain GYO_0694 PF04545 Sigma-70, region 4 GYO_0694 PF04542 Sigma-70 region 2 GYO_0694 PF04539 Sigma-70 region 3 GYO_0695 PF07228 Stage II sporulation protein E (SpoIIE) GYO_0696 PF09371 Tex-like protein N-terminal domain GYO_0696 PF16921 Tex protein YqgF-like domain GYO_0696 PF17674 HHH domain GYO_0696 PF00575 S1 RNA binding domain GYO_0698 PF10263 SprT-like family GYO_0698 PF17283 SprT-like zinc ribbon domain GYO_0707 PF07690 Major Facilitator Superfamily GYO_0708 PF00106 short chain dehydrogenase GYO_0709 PF00381 PTS HPr component phosphorylation site GYO_0710 PF02129 X-Pro dipeptidyl-peptidase (S15 family) GYO_0711 PF00440 Bacterial regulatory proteins, tetR family GYO_0715 PF01037 Lrp/AsnC ligand binding domain GYO_0716 PF00440 Bacterial regulatory proteins, tetR family GYO_0717 PF00561 alpha/beta hydrolase fold GYO_0717 PF00106 short chain dehydrogenase GYO_0718 PF08240 Alcohol dehydrogenase GroES-like domain GYO_0718 PF00107 Zinc-binding dehydrogenase GYO_0719 PF00296 Luciferase-like monooxygenase GYO_0720 PF01037 Lrp/AsnC ligand binding domain GYO_0721 PF12706 Beta-lactamase superfamily domain GYO_0722 PF00083 Sugar (and other) transporter GYO_0722 PF07690 Major Facilitator Superfamily GYO_0723 PF00701 Dihydrodipicolinate synthetase family GYO_0724 PF07690 Major Facilitator Superfamily GYO_0725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GYO_0725 PF03466 LysR substrate binding domain GYO_0726 PF03473 MOSC domain GYO_0726 PF03475 3-alpha domain GYO_0727 PF01810 LysE type translocator GYO_0730 PF00487 Fatty acid desaturase GYO_0732 PF00313 'Cold-shock' DNA-binding domain GYO_0733 PF02559 CarD-like/TRCF domain GYO_0738 PF07690 Major Facilitator Superfamily GYO_0739 PF01381 Helix-turn-helix GYO_0740 PF12833 Helix-turn-helix domain GYO_0740 PF06445 GyrI-like small molecule binding domain GYO_0742 PF08818 Domain of unknown function (DU1801) GYO_0747 PF00381 PTS HPr component phosphorylation site GYO_0748 PF00440 Bacterial regulatory proteins, tetR family GYO_0750 PF12706 Beta-lactamase superfamily domain GYO_0751 PF01037 Lrp/AsnC ligand binding domain GYO_0752 PF00892 EamA-like transporter family GYO_0753 PF00392 Bacterial regulatory proteins, gntR family GYO_0753 PF00155 Aminotransferase class I and II GYO_0754 PF01575 MaoC like domain GYO_0755 PF06821 Serine hydrolase GYO_0756 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) GYO_0756 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 GYO_0757 PF01638 HxlR-like helix-turn-helix GYO_0758 PF02525 Flavodoxin-like fold GYO_0760 PF01022 Bacterial regulatory protein, arsR family GYO_0761 PF02040 Arsenical pump membrane protein GYO_0762 PF01451 Low molecular weight phosphotyrosine protein phosphatase GYO_0763 PF12746 GNAT acetyltransferase GYO_0765 PF11738 Protein of unknown function (DUF3298) GYO_0765 PF01522 Polysaccharide deacetylase GYO_0765 PF13739 Deacetylase PdaC GYO_0767 PF00512 His Kinase A (phospho-acceptor) domain GYO_0767 PF00989 PAS fold GYO_0767 PF16736 Single Cache-like GYO_0767 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GYO_0768 PF00486 Transcriptional regulatory protein, C terminal GYO_0768 PF00072 Response regulator receiver domain GYO_0769 PF00892 EamA-like transporter family GYO_0770 PF00392 Bacterial regulatory proteins, gntR family GYO_0770 PF00155 Aminotransferase class I and II GYO_0771 PF01613 Flavin reductase like domain GYO_0773 PF02627 Carboxymuconolactone decarboxylase family GYO_0776 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GYO_0776 PF07730 Histidine kinase GYO_0777 PF00072 Response regulator receiver domain GYO_0777 PF00196 Bacterial regulatory proteins, luxR family GYO_0778 PF03176 MMPL family GYO_0782 PF05525 Branched-chain amino acid transport protein GYO_0784 PF04474 Protein of unknown function (DUF554) GYO_0785 PF13411 MerR HTH family regulatory protein GYO_0785 PF06445 GyrI-like small molecule binding domain GYO_0786 PF01545 Cation efflux family GYO_0786 PF16916 Dimerisation domain of Zinc Transporter GYO_0787 PF00881 Nitroreductase family GYO_0788 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GYO_0789 PF07681 DoxX GYO_0790 PF00085 Thioredoxin GYO_0798 PF00011 Hsp20/alpha crystallin family GYO_0799 PF10676 Spore germination protein gerPA/gerPF GYO_0802 PF00440 Bacterial regulatory proteins, tetR family GYO_0803 PF13564 DoxX-like family GYO_0804 PF00583 Acetyltransferase (GNAT) family GYO_0807 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GYO_0807 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GYO_0808 PF00356 Bacterial regulatory proteins, lacI family GYO_0809 PF00083 Sugar (and other) transporter GYO_0811 PF07690 Major Facilitator Superfamily GYO_0814 PF00324 Amino acid permease GYO_0815 PF05163 DinB family GYO_0816 PF01047 MarR family GYO_0817 PF03176 MMPL family GYO_0818 PF00881 Nitroreductase family GYO_0819 PF01047 MarR family GYO_0820 PF01381 Helix-turn-helix GYO_0820 PF07883 Cupin domain GYO_0824 PF07690 Major Facilitator Superfamily GYO_0826 PF13276 HTH-like domain GYO_0826 PF13333 Integrase core domain GYO_0826 PF00665 Integrase core domain GYO_0827 PF01925 Sulfite exporter TauE/SafE GYO_0828 PF00392 Bacterial regulatory proteins, gntR family GYO_0828 PF07729 FCD domain GYO_0829 PF00704 Glycosyl hydrolases family 18 GYO_0829 PF01476 LysM domain GYO_0830 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase GYO_0831 PF08139 Prokaryotic membrane lipoprotein lipid attachment site GYO_0831 PF11611 Domain of unknown function (DUF4352) GYO_0832 PF00245 Alkaline phosphatase GYO_0834 PF16302 Domain of unknown function (DUF4944) GYO_0835 PF00583 Acetyltransferase (GNAT) family GYO_0836 PF01966 HD domain GYO_0837 PF07563 Protein of unknown function (DUF1541) GYO_0838 PF07690 Major Facilitator Superfamily GYO_0839 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit GYO_0840 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit GYO_0841 PF02378 Phosphotransferase system, EIIC GYO_0842 PF00232 Glycosyl hydrolase family 1 GYO_0843 PF07702 UTRA domain GYO_0843 PF00392 Bacterial regulatory proteins, gntR family GYO_0844 PF00480 ROK family GYO_0845 PF01238 Phosphomannose isomerase type I GYO_0846 PF02156 Glycosyl hydrolase family 26 GYO_0853 PF00586 AIR synthase related protein, N-terminal domain GYO_0853 PF02769 AIR synthase related protein, C-terminal domain GYO_0854 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE GYO_0855 PF00814 Glycoprotease family GYO_0856 PF00583 Acetyltransferase (GNAT) family GYO_0857 PF00814 Glycoprotease family GYO_0859 PF16326 ABC transporter C-terminal domain GYO_0859 PF12848 ABC transporter GYO_0859 PF00005 ABC transporter GYO_0860 PF01967 MoaC family GYO_0861 PF06971 Putative DNA-binding protein N-terminus GYO_0861 PF02629 CoA binding domain GYO_0862 PF02416 mttA/Hcf106 family GYO_0863 PF00902 Sec-independent protein translocase protein (TatC) GYO_0864 PF14146 Domain of unknown function (DUF4305) GYO_0865 PF02517 CPBP intramembrane metalloprotease GYO_0866 PF00166 Chaperonin 10 Kd subunit GYO_0867 PF00118 TCP-1/cpn60 chaperonin family GYO_0870 PF13176 Tetratricopeptide repeat GYO_0870 PF00931 NB-ARC domain GYO_0871 PF00107 Zinc-binding dehydrogenase GYO_0871 PF08240 Alcohol dehydrogenase GroES-like domain GYO_0873 PF00294 pfkB family carbohydrate kinase GYO_0874 PF04012 PspA/IM30 family GYO_0875 PF08271 TFIIB zinc-binding GYO_0876 PF04536 TPM domain GYO_0877 PF13421 SPFH domain-Band 7 family GYO_0878 PF07885 Ion channel GYO_0879 PF00083 Sugar (and other) transporter GYO_0880 PF08240 Alcohol dehydrogenase GroES-like domain GYO_0880 PF00107 Zinc-binding dehydrogenase GYO_0881 PF03330 Lytic transglycolase GYO_0882 PF07676 WD40-like Beta Propeller Repeat GYO_0884 PF14169 Cold-inducible protein YdjO GYO_0885 PF12697 Alpha/beta hydrolase family GYO_0886 PF13170 Protein of unknown function (DUF4003) GYO_0890 PF00324 Amino acid permease GYO_0891 PF16916 Dimerisation domain of Zinc Transporter GYO_0891 PF01545 Cation efflux family GYO_0892 PF07726 ATPase family associated with various cellular activities (AAA) GYO_0892 PF17863 AAA lid domain GYO_0893 PF01882 Protein of unknown function DUF58 GYO_0894 PF13559 Domain of unknown function (DUF4129) GYO_0894 PF01841 Transglutaminase-like superfamily GYO_0894 PF11992 Domain of unknown function (DUF3488) GYO_0895 PF00117 Glutamine amidotransferase class-I GYO_0895 PF00958 GMP synthase C terminal domain GYO_0895 PF02540 NAD synthase GYO_0897 PF00860 Permease family GYO_0899 PF13076 Fur-regulated basic protein A GYO_0900 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) GYO_0901 PF14044 NETI protein GYO_0902 PF00731 AIR carboxylase GYO_0903 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain GYO_0903 PF02222 ATP-grasp domain GYO_0904 PF00206 Lyase GYO_0904 PF10397 Adenylosuccinate lyase C-terminus GYO_0905 PF01259 SAICAR synthetase GYO_0906 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase GYO_0908 PF00586 AIR synthase related protein, N-terminal domain GYO_0908 PF02769 AIR synthase related protein, C-terminal domain GYO_0908 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain GYO_0909 PF00156 Phosphoribosyl transferase domain GYO_0910 PF02769 AIR synthase related protein, C-terminal domain GYO_0910 PF00586 AIR synthase related protein, N-terminal domain GYO_0911 PF00551 Formyl transferase GYO_0912 PF02142 MGS-like domain GYO_0912 PF01808 AICARFT/IMPCHase bienzyme GYO_0913 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain GYO_0913 PF02844 Phosphoribosylglycinamide synthetase, N domain GYO_0913 PF02843 Phosphoribosylglycinamide synthetase, C domain GYO_0914 PF01037 Lrp/AsnC ligand binding domain GYO_0915 PF13520 Amino acid permease GYO_0916 PF11127 Protein of unknown function (DUF2892) GYO_0918 PF11258 Protein of unknown function (DUF3048) N-terminal domain GYO_0918 PF17479 Protein of unknown function (DUF3048) C-terminal domain GYO_0919 PF01371 Trp repressor protein GYO_0920 PF01645 Conserved region in glutamate synthase GYO_0922 PF01884 PcrB family GYO_0923 PF13361 UvrD-like helicase C-terminal domain GYO_0923 PF00580 UvrD/REP helicase N-terminal domain GYO_0924 PF12826 Helix-hairpin-helix motif GYO_0924 PF03120 NAD-dependent DNA ligase OB-fold domain GYO_0924 PF00533 BRCA1 C Terminus (BRCT) domain GYO_0924 PF01653 NAD-dependent DNA ligase adenylation domain GYO_0924 PF03119 NAD-dependent DNA ligase C4 zinc finger domain GYO_0925 PF07537 CamS sex pheromone cAM373 precursor GYO_0926 PF01636 Phosphotransferase enzyme family GYO_0927 PF02308 MgtC family GYO_0928 PF00474 Sodium:solute symporter family GYO_0930 PF02686 Glu-tRNAGln amidotransferase C subunit GYO_0931 PF01425 Amidase GYO_0932 PF02637 GatB domain GYO_0932 PF02934 GatB/GatE catalytic domain GYO_0933 PF00440 Bacterial regulatory proteins, tetR family GYO_0935 PF00781 Diacylglycerol kinase catalytic domain GYO_0936 PF05958 tRNA (Uracil-5-)-methyltransferase GYO_0936 PF01938 TRAM domain GYO_0939 PF04740 LXG domain of WXG superfamily GYO_0945 PF01709 Transcriptional regulator GYO_0947 PF00440 Bacterial regulatory proteins, tetR family GYO_0948 PF12680 SnoaL-like domain GYO_0949 PF01370 NAD dependent epimerase/dehydratase family GYO_0950 PF11007 Spore coat associated protein JA (CotJA) GYO_0951 PF12652 CotJB protein GYO_0952 PF05067 Manganese containing catalase GYO_0953 PF00583 Acetyltransferase (GNAT) family GYO_0954 PF04854 Protein of unknown function, DUF624 GYO_0955 PF06580 Histidine kinase GYO_0955 PF02743 Cache domain GYO_0955 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GYO_0955 PF00672 HAMP domain GYO_0956 PF12833 Helix-turn-helix domain GYO_0956 PF00072 Response regulator receiver domain GYO_0957 PF13416 Bacterial extracellular solute-binding protein GYO_0958 PF00528 Binding-protein-dependent transport system inner membrane component GYO_0959 PF00528 Binding-protein-dependent transport system inner membrane component GYO_0960 PF07470 Glycosyl Hydrolase Family 88 GYO_0961 PF12833 Helix-turn-helix domain GYO_0962 PF13472 GDSL-like Lipase/Acylhydrolase family GYO_0963 PF09224 Domain of unknown function (DUF1961) GYO_0964 PF04854 Protein of unknown function, DUF624 GYO_0965 PF18370 Rhamnogalacturonan I lyases beta-sheet domain GYO_0966 PF18370 Rhamnogalacturonan I lyases beta-sheet domain GYO_0966 PF01839 FG-GAP repeat GYO_0967 PF00657 GDSL-like Lipase/Acylhydrolase GYO_0968 PF08533 Beta-galactosidase C-terminal domain GYO_0968 PF08532 Beta-galactosidase trimerisation domain GYO_0968 PF02449 Beta-galactosidase GYO_0970 PF01547 Bacterial extracellular solute-binding protein GYO_0971 PF00528 Binding-protein-dependent transport system inner membrane component GYO_0972 PF00528 Binding-protein-dependent transport system inner membrane component GYO_0973 PF02056 Family 4 glycosyl hydrolase GYO_0973 PF11975 Family 4 glycosyl hydrolase C-terminal domain GYO_0974 PF04239 Protein of unknown function (DUF421) GYO_0975 PF03992 Antibiotic biosynthesis monooxygenase GYO_0976 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GYO_0978 PF01740 STAS domain GYO_0979 PF10055 Uncharacterized small protein (DUF2292) GYO_0980 PF01027 Inhibitor of apoptosis-promoting Bax1 GYO_0981 PF00892 EamA-like transporter family GYO_0982 PF01047 MarR family GYO_0983 PF01494 FAD binding domain GYO_0984 PF04471 Restriction endonuclease GYO_0984 PF14338 Mrr N-terminal domain GYO_0985 PF13037 Domain of unknown function (DUF3898) GYO_0985 PF13039 Protein of unknown function (DUF3900) GYO_0986 PF00258 Flavodoxin GYO_0986 PF00667 FAD binding domain GYO_0986 PF00175 Oxidoreductase NAD-binding domain GYO_0986 PF00067 Cytochrome P450 GYO_0987 PF00884 Sulfatase GYO_0989 PF00483 Nucleotidyl transferase GYO_0990 PF16363 GDP-mannose 4,6 dehydratase GYO_0991 PF03407 Nucleotide-diphospho-sugar transferase GYO_0993 PF03407 Nucleotide-diphospho-sugar transferase GYO_0994 PF07690 Major Facilitator Superfamily GYO_0997 PF13520 Amino acid permease GYO_0998 PF00171 Aldehyde dehydrogenase family GYO_1000 PF12848 ABC transporter GYO_1000 PF16326 ABC transporter C-terminal domain GYO_1000 PF00005 ABC transporter GYO_1001 PF10787 Uncharacterised protein from bacillus cereus group GYO_1002 PF13411 MerR HTH family regulatory protein GYO_1003 PF07690 Major Facilitator Superfamily GYO_1007 PF12848 ABC transporter GYO_1007 PF00005 ABC transporter GYO_1008 PF00271 Helicase conserved C-terminal domain GYO_1008 PF00270 DEAD/DEAH box helicase GYO_1009 PF00583 Acetyltransferase (GNAT) family GYO_1010 PF16884 N-terminal domain of oxidoreductase GYO_1010 PF00107 Zinc-binding dehydrogenase GYO_1012 PF07690 Major Facilitator Superfamily GYO_1013 PF03781 Sulfatase-modifying factor enzyme 1 GYO_1014 PF00005 ABC transporter GYO_1015 PF01032 FecCD transport family GYO_1016 PF01032 FecCD transport family GYO_1017 PF01497 Periplasmic binding protein GYO_1018 PF11486 Protein of unknown function (DUF3212) GYO_1019 PF11181 Heat induced stress protein YflT GYO_1020 PF00544 Pectate lyase GYO_1021 PF00939 Sodium:sulfate symporter transmembrane region GYO_1023 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain GYO_1023 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GYO_1024 PF12431 Transcriptional regulator GYO_1024 PF00072 Response regulator receiver domain GYO_1024 PF08279 HTH domain GYO_1025 PF03401 Tripartite tricarboxylate transporter family receptor GYO_1027 PF03600 Citrate transporter GYO_1028 PF00753 Metallo-beta-lactamase superfamily GYO_1029 PF02898 Nitric oxide synthase, oxygenase domain GYO_1030 PF00708 Acylphosphatase GYO_1031 PF03475 3-alpha domain GYO_1031 PF03473 MOSC domain GYO_1033 PF11121 Protein of unknown function (DUF2639) GYO_1035 PF11588 Protein of unknown function (DUF3243) GYO_1036 PF00557 Metallopeptidase family M24 GYO_1037 PF02378 Phosphotransferase system, EIIC GYO_1037 PF00367 phosphotransferase system, EIIB GYO_1038 PF00884 Sulfatase GYO_1039 PF09350 Domain of unknown function (DUF1992) GYO_1040 PF01235 Sodium:alanine symporter family GYO_1041 PF03845 Spore germination protein GYO_1044 PF03323 Bacillus/Clostridium GerA spore germination protein GYO_1045 PF00367 phosphotransferase system, EIIB GYO_1045 PF02378 Phosphotransferase system, EIIC GYO_1046 PF00128 Alpha amylase, catalytic domain GYO_1046 PF16657 Maltogenic Amylase, C-terminal domain GYO_1047 PF00392 Bacterial regulatory proteins, gntR family GYO_1047 PF07702 UTRA domain GYO_1048 PF00881 Nitroreductase family GYO_1049 PF02872 5'-nucleotidase, C-terminal domain GYO_1049 PF00149 Calcineurin-like phosphoesterase GYO_1051 PF01965 DJ-1/PfpI family GYO_1052 PF07690 Major Facilitator Superfamily GYO_1054 PF06569 Protein of unknown function (DUF1128) GYO_1055 PF01451 Low molecular weight phosphotyrosine protein phosphatase GYO_1057 PF03631 Virulence factor BrkB GYO_1058 PF07690 Major Facilitator Superfamily GYO_1059 PF01699 Sodium/calcium exchanger protein GYO_1060 PF14167 YfkD-like protein GYO_1061 PF00924 Mechanosensitive ion channel GYO_1062 PF08756 YfkB-like domain GYO_1062 PF04055 Radical SAM superfamily GYO_1064 PF01522 Polysaccharide deacetylase GYO_1065 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase GYO_1065 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase GYO_1066 PF01544 CorA-like Mg2+ transporter protein GYO_1067 PF00730 HhH-GPD superfamily base excision DNA repair protein GYO_1068 PF01938 TRAM domain GYO_1068 PF05958 tRNA (Uracil-5-)-methyltransferase GYO_1069 PF01207 Dihydrouridine synthase (Dus) GYO_1070 PF13302 Acetyltransferase (GNAT) domain GYO_1075 PF00676 Dehydrogenase E1 component GYO_1076 PF02780 Transketolase, C-terminal domain GYO_1076 PF02779 Transketolase, pyrimidine binding domain GYO_1077 PF00364 Biotin-requiring enzyme GYO_1077 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) GYO_1077 PF02817 e3 binding domain GYO_1078 PF07992 Pyridine nucleotide-disulphide oxidoreductase GYO_1078 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GYO_1079 PF00158 Sigma-54 interaction domain GYO_1079 PF02954 Bacterial regulatory protein, Fis family GYO_1079 PF01590 GAF domain GYO_1080 PF08141 Small acid-soluble spore protein H family GYO_1081 PF02694 Uncharacterised BCR, YnfA/UPF0060 family GYO_1082 PF17353 Family of unknown function (DUF5381) GYO_1085 PF06013 Proteins of 100 residues with WXG GYO_1086 PF11975 Family 4 glycosyl hydrolase C-terminal domain GYO_1086 PF02056 Family 4 glycosyl hydrolase GYO_1087 PF01418 Helix-turn-helix domain, rpiR family GYO_1087 PF01380 SIS domain GYO_1088 PF00367 phosphotransferase system, EIIB GYO_1088 PF02378 Phosphotransferase system, EIIC GYO_1089 PF00005 ABC transporter GYO_1089 PF00664 ABC transporter transmembrane region GYO_1090 PF00005 ABC transporter GYO_1090 PF00664 ABC transporter transmembrane region GYO_1091 PF07681 DoxX GYO_1092 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GYO_1093 PF02311 AraC-like ligand binding domain GYO_1093 PF12833 Helix-turn-helix domain GYO_1094 PF00083 Sugar (and other) transporter GYO_1095 PF01261 Xylose isomerase-like TIM barrel GYO_1096 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GYO_1096 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GYO_1097 PF07730 Histidine kinase GYO_1098 PF00072 Response regulator receiver domain GYO_1098 PF00196 Bacterial regulatory proteins, luxR family GYO_1100 PF00005 ABC transporter GYO_1104 PF10400 Virulence activator alpha C-term GYO_1104 PF03551 Transcriptional regulator PadR-like family GYO_1105 PF01674 Lipase (class 2) GYO_1106 PF01757 Acyltransferase family GYO_1108 PF12867 DinB superfamily GYO_1109 PF07690 Major Facilitator Superfamily GYO_1110 PF01047 MarR family GYO_1111 PF09924 Uncharacterised conserved protein (DUF2156) GYO_1111 PF03706 Lysylphosphatidylglycerol synthase TM region GYO_1112 PF01497 Periplasmic binding protein GYO_1113 PF01032 FecCD transport family GYO_1114 PF01032 FecCD transport family GYO_1116 PF02567 Phenazine biosynthesis-like protein GYO_1117 PF00881 Nitroreductase family GYO_1118 PF14151 YfhD-like protein GYO_1119 PF08338 Domain of unknown function (DUF1731) GYO_1119 PF01370 NAD dependent epimerase/dehydratase family GYO_1120 PF02631 RecX family GYO_1121 PF08838 Protein of unknown function (DUF1811) GYO_1122 PF07690 Major Facilitator Superfamily GYO_1123 PF08176 Small acid-soluble spore protein K family GYO_1124 PF14043 WVELL protein GYO_1125 PF08239 Bacterial SH3 domain GYO_1126 PF13630 SdpI/YhfL protein family GYO_1127 PF00561 alpha/beta hydrolase fold GYO_1128 PF00535 Glycosyl transferase family 2 GYO_1129 PF09586 Bacterial membrane protein YfhO GYO_1130 PF04307 LexA-binding, inner membrane-associated putative hydrolase GYO_1131 PF14815 NUDIX domain GYO_1131 PF00730 HhH-GPD superfamily base excision DNA repair protein GYO_1134 PF04259 Small, acid-soluble spore protein, gamma-type GYO_1135 PF14182 YgaB-like protein GYO_1136 PF04167 Protein of unknown function (DUF402) GYO_1137 PF00664 ABC transporter transmembrane region GYO_1137 PF00005 ABC transporter GYO_1138 PF06081 Aromatic acid exporter family member 1 GYO_1139 PF00202 Aminotransferase class-III GYO_1140 PF00578 AhpC/TSA family GYO_1141 PF01475 Ferric uptake regulator family GYO_1142 PF11023 Zinc-ribbon containing domain GYO_1143 PF18576 Helix-turn-helix domain GYO_1143 PF14540 Nucleotidyltransferase-like GYO_1161 PF07070 SpoOM protein GYO_1163 PF07875 Coat F domain GYO_1164 PF03575 Peptidase family S51 GYO_1166 PF01964 Radical SAM ThiC family GYO_1166 PF13667 ThiC-associated domain GYO_1167 PF13040 Fur-regulated basic protein B GYO_1168 PF00199 Catalase GYO_1168 PF06628 Catalase-related immune-responsive GYO_1169 PF00005 ABC transporter GYO_1170 PF09084 NMT1/THI5 like GYO_1171 PF00528 Binding-protein-dependent transport system inner membrane component GYO_1172 PF00296 Luciferase-like monooxygenase GYO_1174 PF00253 Ribosomal protein S14p/S29e GYO_1176 PF01381 Helix-turn-helix GYO_1179 PF08331 Domain of unknown function (DUF1730) GYO_1180 PF12671 Putative amidase domain GYO_1181 PF00588 SpoU rRNA Methylase family GYO_1182 PF13171 Protein of unknown function (DUF4004) GYO_1183 PF04519 Polymer-forming cytoskeletal GYO_1186 PF08298 PrkA AAA domain GYO_1186 PF06798 PrkA serine protein kinase C-terminal domain GYO_1187 PF04285 Protein of unknown function (DUF444) GYO_1188 PF01047 MarR family GYO_1190 PF07690 Major Facilitator Superfamily GYO_1191 PF03358 NADPH-dependent FMN reductase GYO_1194 PF00392 Bacterial regulatory proteins, gntR family GYO_1195 PF00005 ABC transporter GYO_1196 PF00005 ABC transporter GYO_1197 PF12679 ABC-2 family transporter protein GYO_1198 PF00313 'Cold-shock' DNA-binding domain GYO_1199 PF03180 NLPA lipoprotein GYO_1200 PF00990 Diguanylate cyclase, GGDEF domain GYO_1200 PF07694 5TMR of 5TMR-LYT GYO_1201 PF00375 Sodium:dicarboxylate symporter family GYO_1203 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) GYO_1206 PF00746 LPXTG cell wall anchor motif GYO_1206 PF00565 Staphylococcal nuclease homologue GYO_1206 PF00149 Calcineurin-like phosphoesterase GYO_1206 PF02872 5'-nucleotidase, C-terminal domain GYO_1207 PF04203 Sortase domain GYO_1208 PF01479 S4 domain GYO_1208 PF00849 RNA pseudouridylate synthase GYO_1209 PF17326 Family of unknown function (DUF5365) GYO_1210 PF00571 CBS domain GYO_1211 PF13419 Haloacid dehalogenase-like hydrolase GYO_1212 PF00583 Acetyltransferase (GNAT) family GYO_1212 PF00795 Carbon-nitrogen hydrolase GYO_1214 PF00202 Aminotransferase class-III GYO_1215 PF04309 Glycerol-3-phosphate responsive antiterminator GYO_1216 PF00230 Major intrinsic protein GYO_1217 PF02782 FGGY family of carbohydrate kinases, C-terminal domain GYO_1217 PF00370 FGGY family of carbohydrate kinases, N-terminal domain GYO_1218 PF01266 FAD dependent oxidoreductase GYO_1218 PF16901 C-terminal domain of alpha-glycerophosphate oxidase GYO_1219 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III GYO_1219 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain GYO_1219 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II GYO_1219 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I GYO_1220 PF07730 Histidine kinase GYO_1220 PF13185 GAF domain GYO_1221 PF00196 Bacterial regulatory proteins, luxR family GYO_1221 PF00072 Response regulator receiver domain GYO_1222 PF03358 NADPH-dependent FMN reductase GYO_1223 PF14148 YhdB-like protein GYO_1224 PF13028 Protein of unknown function (DUF3889) GYO_1225 PF01476 LysM domain GYO_1225 PF00877 NlpC/P60 family GYO_1226 PF02082 Transcriptional regulator GYO_1227 PF05552 Conserved TM helix GYO_1229 PF00245 Alkaline phosphatase GYO_1230 PF00877 NlpC/P60 family GYO_1230 PF01476 LysM domain GYO_1231 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GYO_1231 PF03466 LysR substrate binding domain GYO_1232 PF00285 Citrate synthase, C-terminal domain GYO_1234 PF13520 Amino acid permease GYO_1236 PF00209 Sodium:neurotransmitter symporter family GYO_1237 PF00155 Aminotransferase class I and II GYO_1237 PF00392 Bacterial regulatory proteins, gntR family GYO_1238 PF00583 Acetyltransferase (GNAT) family GYO_1239 PF17453 Sigma-M inhibitor GYO_1240 PF13800 Sigma factor regulator N-terminal GYO_1240 PF13791 Sigma factor regulator C-terminal GYO_1241 PF04542 Sigma-70 region 2 GYO_1241 PF08281 Sigma-70, region 4 GYO_1242 PF00248 Aldo/keto reductase family GYO_1243 PF01553 Acyltransferase GYO_1244 PF01266 FAD dependent oxidoreductase GYO_1246 PF01595 Cyclin M transmembrane N-terminal domain GYO_1246 PF00571 CBS domain GYO_1246 PF03471 Transporter associated domain GYO_1247 PF13411 MerR HTH family regulatory protein GYO_1248 PF00155 Aminotransferase class I and II GYO_1250 PF03471 Transporter associated domain GYO_1250 PF00571 CBS domain GYO_1250 PF01595 Cyclin M transmembrane N-terminal domain GYO_1251 PF02537 CrcB-like protein, Camphor Resistance (CrcB) GYO_1252 PF02537 CrcB-like protein, Camphor Resistance (CrcB) GYO_1253 PF03009 Glycerophosphoryl diester phosphodiesterase family GYO_1255 PF00924 Mechanosensitive ion channel GYO_1256 PF02146 Sir2 family GYO_1257 PF01522 Polysaccharide deacetylase GYO_1258 PF01063 Amino-transferase class IV GYO_1259 PF03553 Na+/H+ antiporter family GYO_1260 PF00582 Universal stress protein family GYO_1262 PF00664 ABC transporter transmembrane region GYO_1262 PF00005 ABC transporter GYO_1263 PF00664 ABC transporter transmembrane region GYO_1263 PF00005 ABC transporter GYO_1264 PF13460 NAD(P)H-binding GYO_1266 PF00269 Small, acid-soluble spore proteins, alpha/beta type GYO_1267 PF17277 Family of unknown function (DUF5342) GYO_1269 PF14398 YheC/D like ATP-grasp GYO_1270 PF14398 YheC/D like ATP-grasp GYO_1271 PF04286 Protein of unknown function (DUF445) GYO_1272 PF06133 Control of competence regulator ComK, YlbF/YmcA GYO_1273 PF08713 DNA alkylation repair enzyme GYO_1275 PF04055 Radical SAM superfamily GYO_1276 PF00999 Sodium/hydrogen exchanger family GYO_1277 PF02080 TrkA-C domain GYO_1279 PF00378 Enoyl-CoA hydratase/isomerase GYO_1280 PF14120 YhzD-like protein GYO_1281 PF13732 Domain of unknown function (DUF4162) GYO_1281 PF00005 ABC transporter GYO_1283 PF00149 Calcineurin-like phosphoesterase GYO_1284 PF13514 AAA domain GYO_1285 PF01966 HD domain GYO_1286 PF14147 Sporulation protein YhaL GYO_1288 PF09680 Family of unknown function GYO_1290 PF11667 Putative zincin peptidase GYO_1291 PF08963 Protein of unknown function (DUF1878) GYO_1292 PF01047 MarR family GYO_1293 PF12732 YtxH-like protein GYO_1295 PF17099 Tryptophan transporter TrpP GYO_1296 PF00266 Aminotransferase class-V GYO_1297 PF01230 HIT domain GYO_1298 PF00005 ABC transporter GYO_1299 PF05975 Bacterial ABC transporter protein EcsB GYO_1300 PF12787 EcsC protein family GYO_1301 PF07687 Peptidase dimerisation domain GYO_1301 PF01546 Peptidase family M20/M25/M40 GYO_1305 PF03992 Antibiotic biosynthesis monooxygenase GYO_1306 PF00912 Transglycosylase GYO_1306 PF00905 Penicillin binding protein transpeptidase domain GYO_1307 PF01208 Uroporphyrinogen decarboxylase (URO-D) GYO_1311 PF00440 Bacterial regulatory proteins, tetR family GYO_1311 PF17932 Tetracyclin repressor-like, C-terminal domain GYO_1313 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal GYO_1313 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GYO_1314 PF10086 YhfC intramembrane metalloprotease GYO_1318 PF05343 M42 glutamyl aminopeptidase GYO_1319 PF04266 ASCH domain GYO_1320 PF00375 Sodium:dicarboxylate symporter family GYO_1321 PF14149 YhfH-like protein GYO_1322 PF12706 Beta-lactamase superfamily domain GYO_1323 PF10437 Bacterial lipoate protein ligase C-terminus GYO_1323 PF03099 Biotin/lipoate A/B protein ligase family GYO_1324 PF13460 NAD(P)H-binding GYO_1325 PF00501 AMP-binding enzyme GYO_1325 PF13193 AMP-binding enzyme C-terminal domain GYO_1327 PF16491 CAAX prenyl protease N-terminal, five membrane helices GYO_1327 PF01435 Peptidase family M48 GYO_1328 PF00082 Subtilase family GYO_1328 PF05922 Peptidase inhibitor I9 GYO_1331 PF00583 Acetyltransferase (GNAT) family GYO_1333 PF08240 Alcohol dehydrogenase GroES-like domain GYO_1333 PF00107 Zinc-binding dehydrogenase GYO_1335 PF01497 Periplasmic binding protein GYO_1336 PF00300 Histidine phosphatase superfamily (branch 1) GYO_1337 PF00108 Thiolase, N-terminal domain GYO_1337 PF02803 Thiolase, C-terminal domain GYO_1338 PF13193 AMP-binding enzyme C-terminal domain GYO_1338 PF00501 AMP-binding enzyme GYO_1339 PF02632 BioY family GYO_1340 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GYO_1341 PF01266 FAD dependent oxidoreductase GYO_1341 PF00355 Rieske [2Fe-2S] domain GYO_1343 PF08858 IDEAL domain GYO_1344 PF06338 ComK protein GYO_1347 PF05901 Excalibur calcium-binding domain GYO_1348 PF00474 Sodium:solute symporter family GYO_1349 PF11755 Protein of unknown function (DUF3311) GYO_1351 PF09335 SNARE associated Golgi protein GYO_1352 PF10502 Signal peptidase, peptidase S26 GYO_1353 PF01494 FAD binding domain GYO_1354 PF01047 MarR family GYO_1356 PF07690 Major Facilitator Superfamily GYO_1357 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GYO_1357 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GYO_1358 PF05116 Sucrose-6F-phosphate phosphohydrolase GYO_1359 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family GYO_1360 PF00356 Bacterial regulatory proteins, lacI family GYO_1361 PF05145 Transition state regulatory protein AbrB GYO_1362 PF07690 Major Facilitator Superfamily GYO_1363 PF12793 Sugar transport-related sRNA regulator N-term GYO_1363 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GYO_1365 PF02915 Rubrerythrin GYO_1366 PF13361 UvrD-like helicase C-terminal domain GYO_1366 PF12705 PD-(D/E)XK nuclease superfamily GYO_1367 PF12705 PD-(D/E)XK nuclease superfamily GYO_1367 PF00580 UvrD/REP helicase N-terminal domain GYO_1367 PF13361 UvrD-like helicase C-terminal domain GYO_1368 PF00149 Calcineurin-like phosphoesterase GYO_1368 PF12320 Type 5 capsule protein repressor C-terminal domain GYO_1369 PF13476 AAA domain GYO_1371 PF10676 Spore germination protein gerPA/gerPF GYO_1372 PF10970 Spore germination protein GerPE GYO_1374 PF10737 Spore germination protein GerPC GYO_1375 PF10803 Spore germination GerPB GYO_1376 PF10676 Spore germination protein gerPA/gerPF GYO_1377 PF09388 Spo0E like sporulation regulatory protein GYO_1378 PF08757 CotH kinase protein GYO_1380 PF01557 Fumarylacetoacetate (FAA) hydrolase family GYO_1381 PF07457 Protein of unknown function (DUF1516) GYO_1382 PF17936 Bacterial Ig domain GYO_1382 PF00082 Subtilase family GYO_1383 PF10949 Protein of unknown function (DUF2777) GYO_1384 PF13537 Glutamine amidotransferase domain GYO_1384 PF00733 Asparagine synthase GYO_1385 PF05163 DinB family GYO_1388 PF01554 MatE GYO_1389 PF12833 Helix-turn-helix domain GYO_1389 PF02311 AraC-like ligand binding domain GYO_1390 PF00356 Bacterial regulatory proteins, lacI family GYO_1391 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GYO_1391 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GYO_1392 PF05163 DinB family GYO_1393 PF01810 LysE type translocator GYO_1394 PF00155 Aminotransferase class I and II GYO_1394 PF00392 Bacterial regulatory proteins, gntR family GYO_1395 PF13599 Pentapeptide repeats (9 copies) GYO_1396 PF08386 TAP-like protein GYO_1396 PF00561 alpha/beta hydrolase fold GYO_1398 PF01747 ATP-sulfurylase GYO_1398 PF14306 PUA-like domain GYO_1399 PF01507 Phosphoadenosine phosphosulfate reductase family GYO_1400 PF04029 2-phosphosulpholactate phosphatase GYO_1401 PF02679 (2R)-phospho-3-sulfolactate synthase (ComA) GYO_1402 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 GYO_1403 PF13378 Enolase C-terminal domain-like GYO_1403 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain GYO_1404 PF07690 Major Facilitator Superfamily GYO_1405 PF18014 Acetyltransferase (GNAT) domain GYO_1405 PF13673 Acetyltransferase (GNAT) domain GYO_1406 PF13673 Acetyltransferase (GNAT) domain GYO_1408 PF04461 Protein of unknown function (DUF520) GYO_1409 PF17783 CvfB-like winged helix domain GYO_1409 PF13509 S1 domain GYO_1410 PF12650 Domain of unknown function (DUF3784) GYO_1411 PF02645 Uncharacterised protein, DegV family COG1307 GYO_1412 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) GYO_1412 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 GYO_1413 PF12690 Intracellular proteinase inhibitor GYO_1414 PF12758 Protein of unknown function (DUF3813) GYO_1417 PF00326 Prolyl oligopeptidase family GYO_1418 PF01883 Iron-sulfur cluster assembly protein GYO_1422 PF07690 Major Facilitator Superfamily GYO_1423 PF01118 Semialdehyde dehydrogenase, NAD binding domain GYO_1423 PF02774 Semialdehyde dehydrogenase, dimerisation domain GYO_1424 PF01960 ArgJ family GYO_1425 PF00696 Amino acid kinase family GYO_1426 PF00202 Aminotransferase class-III GYO_1427 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain GYO_1427 PF00117 Glutamine amidotransferase class-I GYO_1428 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain GYO_1428 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain GYO_1429 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain GYO_1429 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain GYO_1430 PF14168 YjzC-like protein GYO_1431 PF11151 Protein of unknown function (DUF2929) GYO_1434 PF02608 ABC transporter substrate-binding protein PnrA-like GYO_1435 PF10815 ComZ GYO_1437 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal GYO_1437 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III GYO_1438 PF00109 Beta-ketoacyl synthase, N-terminal domain GYO_1438 PF02801 Beta-ketoacyl synthase, C-terminal domain GYO_1439 PF10026 Predicted Zn-dependent protease (DUF2268) GYO_1440 PF00005 ABC transporter GYO_1440 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GYO_1441 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GYO_1441 PF00005 ABC transporter GYO_1442 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GYO_1443 PF00528 Binding-protein-dependent transport system inner membrane component GYO_1444 PF12911 N-terminal TM domain of oligopeptide transport permease C GYO_1444 PF00528 Binding-protein-dependent transport system inner membrane component GYO_1445 PF12227 Protein of unknown function (DUF3603) GYO_1446 PF00579 tRNA synthetases class I (W and Y) GYO_1447 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GYO_1448 PF00528 Binding-protein-dependent transport system inner membrane component GYO_1449 PF00528 Binding-protein-dependent transport system inner membrane component GYO_1449 PF12911 N-terminal TM domain of oligopeptide transport permease C GYO_1450 PF00005 ABC transporter GYO_1450 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GYO_1451 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GYO_1451 PF00005 ABC transporter GYO_1452 PF07690 Major Facilitator Superfamily GYO_1453 PF13508 Acetyltransferase (GNAT) domain GYO_1454 PF03960 ArsC family GYO_1455 PF03741 Integral membrane protein TerC family GYO_1456 PF05389 Negative regulator of genetic competence (MecA) GYO_1457 PF06054 Competence protein CoiA-like family GYO_1458 PF08439 Oligopeptidase F GYO_1458 PF01432 Peptidase family M3 GYO_1461 PF01152 Bacterial-like globin GYO_1462 PF01464 Transglycosylase SLT domain GYO_1463 PF01928 CYTH domain GYO_1465 PF04607 Region found in RelA / SpoT proteins GYO_1466 PF01513 ATP-NAD kinase GYO_1467 PF00849 RNA pseudouridylate synthase GYO_1468 PF00149 Calcineurin-like phosphoesterase GYO_1469 PF00999 Sodium/hydrogen exchanger family GYO_1469 PF02254 TrkA-N domain GYO_1469 PF02080 TrkA-C domain GYO_1470 PF03070 TENA/THI-4/PQQC family GYO_1471 PF02581 Thiamine monophosphate synthase GYO_1472 PF01266 FAD dependent oxidoreductase GYO_1473 PF02597 ThiS family GYO_1474 PF05690 Thiazole biosynthesis protein ThiG GYO_1475 PF00899 ThiF family GYO_1476 PF08543 Phosphomethylpyrimidine kinase GYO_1478 PF14153 Spore coat protein CotO GYO_1479 PF10612 Spore coat protein Z GYO_1480 PF10612 Spore coat protein Z GYO_1481 PF07552 Spore Coat Protein X and V domain GYO_1483 PF07552 Spore Coat Protein X and V domain GYO_1484 PF07098 Protein of unknown function (DUF1360) GYO_1488 PF14069 Stage VI sporulation protein F GYO_1489 PF13361 UvrD-like helicase C-terminal domain GYO_1489 PF00580 UvrD/REP helicase N-terminal domain GYO_1491 PF13673 Acetyltransferase (GNAT) domain GYO_1493 PF00756 Putative esterase GYO_1494 PF01053 Cys/Met metabolism PLP-dependent enzyme GYO_1495 PF01053 Cys/Met metabolism PLP-dependent enzyme GYO_1496 PF13302 Acetyltransferase (GNAT) domain GYO_1501 PF18801 response regulator aspartate phosphatase H, N terminal GYO_1502 PF03992 Antibiotic biosynthesis monooxygenase GYO_1503 PF00874 PRD domain GYO_1503 PF05043 Mga helix-turn-helix domain GYO_1503 PF08279 HTH domain GYO_1503 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 GYO_1504 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 GYO_1504 PF02378 Phosphotransferase system, EIIC GYO_1504 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit GYO_1505 PF01238 Phosphomannose isomerase type I GYO_1507 PF13302 Acetyltransferase (GNAT) domain GYO_1509 PF04073 Aminoacyl-tRNA editing domain GYO_1510 PF13783 Domain of unknown function (DUF4177) GYO_1513 PF01040 UbiA prenyltransferase family GYO_1515 PF01522 Polysaccharide deacetylase GYO_1515 PF13739 Deacetylase PdaC GYO_1515 PF11738 Protein of unknown function (DUF3298) GYO_1516 PF10901 Protein of unknown function (DUF2690) GYO_1517 PF14070 Putative motility protein GYO_1521 PF10990 Protein of unknown function (DUF2809) GYO_1522 PF14172 Domain of unknown function (DUF4309) GYO_1523 PF01568 Molydopterin dinucleotide binding domain GYO_1523 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region GYO_1523 PF04879 Molybdopterin oxidoreductase Fe4S4 domain GYO_1523 PF12838 4Fe-4S dicluster domain GYO_1523 PF00384 Molybdopterin oxidoreductase GYO_1524 PF07849 Protein of unknown function (DUF1641) GYO_1525 PF11611 Domain of unknown function (DUF4352) GYO_1526 PF00293 NUDIX domain GYO_1528 PF00067 Cytochrome P450 GYO_1529 PF04101 Glycosyltransferase family 28 C-terminal domain GYO_1531 PF02602 Uroporphyrinogen-III synthase HemD GYO_1532 PF03649 Uncharacterised protein family (UPF0014) GYO_1533 PF00005 ABC transporter GYO_1534 PF13536 Putative multidrug resistance efflux transporter GYO_1536 PF07849 Protein of unknown function (DUF1641) GYO_1537 PF07992 Pyridine nucleotide-disulphide oxidoreductase GYO_1539 PF02614 Glucuronate isomerase GYO_1541 PF02615 Malate/L-lactate dehydrogenase GYO_1542 PF00107 Zinc-binding dehydrogenase GYO_1542 PF08240 Alcohol dehydrogenase GroES-like domain GYO_1543 PF03786 D-mannonate dehydratase (UxuA) GYO_1544 PF00106 short chain dehydrogenase GYO_1545 PF07690 Major Facilitator Superfamily GYO_1546 PF00356 Bacterial regulatory proteins, lacI family GYO_1547 PF01232 Mannitol dehydrogenase Rossmann domain GYO_1547 PF08125 Mannitol dehydrogenase C-terminal domain GYO_1548 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus GYO_1548 PF08666 SAF domain GYO_1549 PF01925 Sulfite exporter TauE/SafE GYO_1550 PF05163 DinB family GYO_1551 PF00004 ATPase family associated with various cellular activities (AAA) GYO_1552 PF18801 response regulator aspartate phosphatase H, N terminal GYO_1554 PF03795 YCII-related domain GYO_1556 PF01471 Putative peptidoglycan binding domain GYO_1556 PF01476 LysM domain GYO_1556 PF01510 N-acetylmuramoyl-L-alanine amidase GYO_1557 PF08000 Bacterial PH domain GYO_1558 PF05908 Poly-gamma-glutamate hydrolase GYO_1559 PF05067 Manganese containing catalase GYO_1560 PF06114 IrrE N-terminal-like domain GYO_1561 PF01381 Helix-turn-helix GYO_1564 PF01695 IstB-like ATP binding protein GYO_1567 PF17356 Phage-like element PBSX protein XtrA GYO_1568 PF08281 Sigma-70, region 4 GYO_1569 PF03592 Terminase small subunit GYO_1569 PF10668 Phage terminase small subunit GYO_1570 PF04466 Phage terminase large subunit GYO_1570 PF17288 Terminase RNAseH like domain GYO_1571 PF04860 Phage portal protein GYO_1572 PF14550 Putative phage serine protease XkdF GYO_1573 PF05065 Phage capsid family GYO_1574 PF11436 Protein of unknown function (DUF3199) GYO_1575 PF12206 Domain of unknown function (DUF3599) GYO_1576 PF04883 Bacteriophage HK97-gp10, putative tail-component GYO_1579 PF17482 Phage tail sheath C-terminal domain GYO_1579 PF04984 Phage tail sheath protein subtilisin-like domain GYO_1579 PF17481 Phage tail sheath protein beta-sandwich domain GYO_1580 PF09393 Phage tail tube protein GYO_1581 PF08890 Phage XkdN-like tail assembly chaperone protein, TAC GYO_1583 PF01464 Transglycosylase SLT domain GYO_1583 PF01464 Transglycosylase SLT domain GYO_1583 PF01464 Transglycosylase SLT domain GYO_1584 PF01476 LysM domain GYO_1586 PF10844 Protein of unknown function (DUF2577) GYO_1587 PF10934 Protein of unknown function (DUF2634) GYO_1588 PF04865 Baseplate J-like protein GYO_1589 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) GYO_1592 PF09636 XkdW protein GYO_1593 PF09693 Phage uncharacterised protein (Phage_XkdX) GYO_1595 PF10779 Haemolysin XhlA GYO_1596 PF04688 SPP1 phage holin GYO_1597 PF01471 Putative peptidoglycan binding domain GYO_1597 PF01476 LysM domain GYO_1597 PF01510 N-acetylmuramoyl-L-alanine amidase GYO_1599 PF14185 Antitoxin SpoIISB, type II toxin-antitoxin system GYO_1600 PF14171 Toxin SpoIISA, type II toxin-antitoxin system GYO_1601 PF01384 Phosphate transporter family GYO_1602 PF01865 Protein of unknown function DUF47 GYO_1603 PF13520 Amino acid permease GYO_1604 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GYO_1606 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase GYO_1607 PF00535 Glycosyl transferase family 2 GYO_1609 PF13180 PDZ domain GYO_1610 PF14748 Pyrroline-5-carboxylate reductase dimerisation GYO_1610 PF03807 NADP oxidoreductase coenzyme F420-dependent GYO_1611 PF04951 D-aminopeptidase GYO_1612 PF00528 Binding-protein-dependent transport system inner membrane component GYO_1613 PF00528 Binding-protein-dependent transport system inner membrane component GYO_1613 PF12911 N-terminal TM domain of oligopeptide transport permease C GYO_1614 PF00005 ABC transporter GYO_1614 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GYO_1615 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle GYO_1616 PF02016 LD-carboxypeptidase N-terminal domain GYO_1616 PF17676 LD-carboxypeptidase C-terminal domain GYO_1617 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain GYO_1617 PF13378 Enolase C-terminal domain-like GYO_1618 PF00877 NlpC/P60 family GYO_1619 PF08352 Oligopeptide/dipeptide transporter, C-terminal region GYO_1619 PF00005 ABC transporter GYO_1620 PF10282 Lactonase, 7-bladed beta-propeller GYO_1622 PF03061 Thioesterase superfamily GYO_1623 PF00970 Oxidoreductase FAD-binding domain GYO_1623 PF00175 Oxidoreductase NAD-binding domain GYO_1623 PF00042 Globin GYO_1625 PF04239 Protein of unknown function (DUF421) GYO_1626 PF12867 DinB superfamily GYO_1627 PF13302 Acetyltransferase (GNAT) domain GYO_1628 PF00893 Small Multidrug Resistance protein GYO_1629 PF00893 Small Multidrug Resistance protein GYO_1630 PF01842 ACT domain GYO_1630 PF00551 Formyl transferase GYO_1631 PF00696 Amino acid kinase family GYO_1631 PF01472 PUA domain GYO_1632 PF00171 Aldehyde dehydrogenase family GYO_1633 PF02566 OsmC-like protein GYO_1634 PF01047 MarR family GYO_1635 PF02566 OsmC-like protein GYO_1636 PF00535 Glycosyl transferase family 2 GYO_1636 PF13181 Tetratricopeptide repeat GYO_1637 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region GYO_1638 PF00300 Histidine phosphatase superfamily (branch 1) GYO_1639 PF08267 Cobalamin-independent synthase, N-terminal domain GYO_1639 PF01717 Cobalamin-independent synthase, Catalytic domain GYO_1641 PF00082 Subtilase family GYO_1643 PF01740 STAS domain GYO_1644 PF02361 Cobalt transport protein GYO_1645 PF00005 ABC transporter GYO_1646 PF09819 ABC-type cobalt transport system, permease component GYO_1647 PF07615 YKOF-related Family GYO_1648 PF00486 Transcriptional regulatory protein, C terminal GYO_1648 PF00072 Response regulator receiver domain GYO_1650 PF03413 Peptidase propeptide and YPEB domain GYO_1651 PF03413 Peptidase propeptide and YPEB domain GYO_1652 PF11132 Transcriptional regulator protein (SplA) GYO_1654 PF03448 MgtE intracellular N domain GYO_1654 PF01769 Divalent cation transporter GYO_1654 PF00571 CBS domain GYO_1655 PF13411 MerR HTH family regulatory protein GYO_1658 PF01047 MarR family GYO_1659 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase GYO_1661 PF00149 Calcineurin-like phosphoesterase GYO_1663 PF00535 Glycosyl transferase family 2 GYO_1664 PF01068 ATP dependent DNA ligase domain GYO_1665 PF02735 Ku70/Ku80 beta-barrel domain GYO_1666 PF00990 Diguanylate cyclase, GGDEF domain GYO_1666 PF03707 Bacterial signalling protein N terminal repeat GYO_1666 PF00563 EAL domain GYO_1668 PF09335 SNARE associated Golgi protein GYO_1669 PF03741 Integral membrane protein TerC family GYO_1670 PF04542 Sigma-70 region 2 GYO_1671 PF12791 Anti-sigma factor N-terminus GYO_1672 PF00269 Small, acid-soluble spore proteins, alpha/beta type GYO_1673 PF08876 Domain of unknown function (DUF1836) GYO_1674 PF01435 Peptidase family M48 GYO_1675 PF02386 Cation transport protein GYO_1678 PF01757 Acyltransferase family GYO_1679 PF00989 PAS fold GYO_1679 PF13426 PAS domain GYO_1679 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GYO_1679 PF13188 PAS domain GYO_1679 PF00512 His Kinase A (phospho-acceptor) domain GYO_1680 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain GYO_1680 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain GYO_1682 PF01008 Initiation factor 2 subunit family GYO_1683 PF01636 Phosphotransferase enzyme family GYO_1684 PF00795 Carbon-nitrogen hydrolase GYO_1685 PF00155 Aminotransferase class I and II GYO_1686 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain GYO_1686 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain GYO_1688 PF00596 Class II Aldolase and Adducin N-terminal domain GYO_1689 PF03079 ARD/ARD' family GYO_1690 PF06803 Protein of unknown function (DUF1232) GYO_1691 PF09388 Spo0E like sporulation regulatory protein GYO_1694 PF02743 Cache domain GYO_1694 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GYO_1694 PF00512 His Kinase A (phospho-acceptor) domain GYO_1695 PF01047 MarR family GYO_1696 PF00691 OmpA family GYO_1696 PF13677 Membrane MotB of proton-channel complex MotA/MotB GYO_1697 PF01618 MotA/TolQ/ExbB proton channel family GYO_1698 PF00004 ATPase family associated with various cellular activities (AAA) GYO_1698 PF10431 C-terminal, D2-small domain, of ClpB protein GYO_1698 PF17871 AAA lid domain GYO_1698 PF07724 AAA domain (Cdc48 subfamily) GYO_1701 PF06508 Queuosine biosynthesis protein QueC GYO_1702 PF01242 6-pyruvoyl tetrahydropterin synthase GYO_1703 PF04055 Radical SAM superfamily GYO_1704 PF14489 QueF-like protein GYO_1707 PF01476 LysM domain GYO_1708 PF00704 Glycosyl hydrolases family 18 GYO_1709 PF11514 Protein of unknown function (DUF3219) GYO_1710 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) GYO_1713 PF07486 Cell Wall Hydrolase GYO_1714 PF01943 Polysaccharide biosynthesis protein GYO_1719 PF01321 Creatinase/Prolidase N-terminal domain GYO_1719 PF00557 Metallopeptidase family M24 GYO_1721 PF00356 Bacterial regulatory proteins, lacI family GYO_1721 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family GYO_1722 PF00874 PRD domain GYO_1722 PF03123 CAT RNA binding domain GYO_1723 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 GYO_1723 PF02378 Phosphotransferase system, EIIC GYO_1723 PF00367 phosphotransferase system, EIIB GYO_1724 PF00381 PTS HPr component phosphorylation site GYO_1725 PF05524 PEP-utilising enzyme, N-terminal GYO_1725 PF00391 PEP-utilising enzyme, mobile domain GYO_1725 PF02896 PEP-utilising enzyme, TIM barrel domain GYO_1726 PF11132 Transcriptional regulator protein (SplA) GYO_1728 PF00583 Acetyltransferase (GNAT) family GYO_1729 PF02743 Cache domain GYO_1729 PF00672 HAMP domain GYO_1729 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GYO_1730 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase GYO_1730 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase GYO_1731 PF00188 Cysteine-rich secretory protein family GYO_1732 PF03717 Penicillin-binding Protein dimerisation domain GYO_1732 PF00905 Penicillin binding protein transpeptidase domain GYO_1733 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GYO_1733 PF08447 PAS fold GYO_1733 PF00989 PAS fold GYO_1733 PF00512 His Kinase A (phospho-acceptor) domain GYO_1734 PF00155 Aminotransferase class I and II GYO_1737 PF00072 Response regulator receiver domain GYO_1737 PF01584 CheW-like domain GYO_1738 PF14177 YkyB-like protein GYO_1739 PF07690 Major Facilitator Superfamily GYO_1740 PF01476 LysM domain GYO_1740 PF03734 L,D-transpeptidase catalytic domain GYO_1741 PF00149 Calcineurin-like phosphoesterase GYO_1741 PF10518 TAT (twin-arginine translocation) pathway signal sequence GYO_1743 PF10388 EAL-domain associated signalling protein domain GYO_1743 PF00563 EAL domain GYO_1745 PF08796 Protein of unknown function (DUF1797) GYO_1746 PF04308 Ribonuclease H-like GYO_1747 PF14156 Antirepressor AbbA GYO_1749 PF03466 LysR substrate binding domain GYO_1749 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GYO_1750 PF00258 Flavodoxin GYO_1752 PF00258 Flavodoxin GYO_1753 PF14602 Hexapeptide repeat of succinyl-transferase GYO_1753 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal GYO_1753 PF00132 Bacterial transferase hexapeptide (six repeats) GYO_1754 PF01546 Peptidase family M20/M25/M40 GYO_1754 PF07687 Peptidase dimerisation domain GYO_1755 PF03698 Uncharacterised protein family (UPF0180) GYO_1756 PF00924 Mechanosensitive ion channel GYO_1757 PF10417 C-terminal domain of 1-Cys peroxiredoxin GYO_1757 PF00578 AhpC/TSA family GYO_1758 PF00578 AhpC/TSA family GYO_1762 PF12804 MobA-like NTP transferase domain GYO_1763 PF00899 ThiF family GYO_1764 PF03454 MoeA C-terminal region (domain IV) GYO_1764 PF00994 Probable molybdopterin binding domain GYO_1764 PF03453 MoeA N-terminal region (domain I and II) GYO_1765 PF03205 Molybdopterin guanine dinucleotide synthesis protein B GYO_1766 PF02391 MoaE protein GYO_1767 PF02597 ThiS family GYO_1768 PF00005 ABC transporter GYO_1768 PF00664 ABC transporter transmembrane region GYO_1769 PF00005 ABC transporter GYO_1769 PF00664 ABC transporter transmembrane region GYO_1770 PF04893 Yip1 domain GYO_1771 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GYO_1772 PF00005 ABC transporter GYO_1773 PF02687 FtsX-like permease family GYO_1773 PF12704 MacB-like periplasmic core domain GYO_1774 PF00455 DeoR C terminal sensor domain GYO_1774 PF08220 DeoR-like helix-turn-helix domain GYO_1775 PF00294 pfkB family carbohydrate kinase GYO_1776 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 GYO_1776 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit GYO_1777 PF10502 Signal peptidase, peptidase S26 GYO_1779 PF12848 ABC transporter GYO_1779 PF00005 ABC transporter GYO_1780 PF08546 Ketopantoate reductase PanE/ApbA C terminal GYO_1780 PF02558 Ketopantoate reductase PanE/ApbA GYO_1781 PF02073 Thermophilic metalloprotease (M29) GYO_1782 PF17447 Uncharacterized YkpC-like GYO_1784 PF18277 AbrB C-terminal domain GYO_1784 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin GYO_1785 PF00989 PAS fold GYO_1785 PF00512 His Kinase A (phospho-acceptor) domain GYO_1785 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GYO_1786 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like GYO_1787 PF02254 TrkA-N domain GYO_1787 PF02080 TrkA-C domain GYO_1788 PF13382 Adenine deaminase C-terminal domain GYO_1788 PF01979 Amidohydrolase family GYO_1789 PF17770 Ribonuclease J C-terminal domain GYO_1789 PF00753 Metallo-beta-lactamase superfamily GYO_1789 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain GYO_1793 PF01327 Polypeptide deformylase GYO_1796 PF10368 Putative cell-wall binding lipoprotein GYO_1797 PF00676 Dehydrogenase E1 component GYO_1798 PF02780 Transketolase, C-terminal domain GYO_1798 PF02779 Transketolase, pyrimidine binding domain GYO_1799 PF02817 e3 binding domain GYO_1799 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) GYO_1799 PF00364 Biotin-requiring enzyme GYO_1800 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GYO_1800 PF07992 Pyridine nucleotide-disulphide oxidoreductase GYO_1803 PF13790 SR1 protein GYO_1804 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain GYO_1804 PF01276 Orn/Lys/Arg decarboxylase, major domain GYO_1805 PF05256 Uncharacterised protein family (UPF0223) GYO_1806 PF06335 Protein of unknown function (DUF1054) GYO_1808 PF00459 Inositol monophosphatase family GYO_1809 PF00583 Acetyltransferase (GNAT) family GYO_1810 PF04072 Leucine carboxyl methyltransferase GYO_1812 PF03413 Peptidase propeptide and YPEB domain GYO_1812 PF01447 Thermolysin metallopeptidase, catalytic domain GYO_1812 PF02868 Thermolysin metallopeptidase, alpha-helical domain GYO_1812 PF07504 Fungalysin/Thermolysin Propeptide Motif GYO_1815 PF08281 Sigma-70, region 4 GYO_1815 PF04542 Sigma-70 region 2 GYO_1816 PF13490 Putative zinc-finger GYO_1818 PF17259 Family of unknown function (DUF5325) GYO_1820 PF14036 YlaH-like protein GYO_1821 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) GYO_1822 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) GYO_1823 PF02562 PhoH-like protein GYO_1823 PF13638 PIN domain GYO_1825 PF04960 Glutaminase GYO_1826 PF07408 Protein of unknown function (DUF1507) GYO_1827 PF01098 Cell cycle protein GYO_1828 PF02785 Biotin carboxylase C-terminal domain GYO_1828 PF02436 Conserved carboxylase domain GYO_1828 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain GYO_1828 PF00682 HMGL-like GYO_1828 PF00289 Biotin carboxylase, N-terminal domain GYO_1828 PF00364 Biotin-requiring enzyme GYO_1830 PF02628 Cytochrome oxidase assembly protein GYO_1831 PF01040 UbiA prenyltransferase family GYO_1833 PF02790 Cytochrome C oxidase subunit II, transmembrane domain GYO_1833 PF00034 Cytochrome c GYO_1833 PF00116 Cytochrome C oxidase subunit II, periplasmic domain GYO_1834 PF00115 Cytochrome C and Quinol oxidase polypeptide I GYO_1835 PF00510 Cytochrome c oxidase subunit III GYO_1836 PF03626 Prokaryotic Cytochrome C oxidase subunit IV GYO_1837 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) GYO_1838 PF08868 YugN-like family GYO_1839 PF00571 CBS domain GYO_1840 PF00188 Cysteine-rich secretory protein family GYO_1840 PF14504 CAP-associated N-terminal GYO_1842 PF14071 Putative coat protein GYO_1843 PF14003 YlbE-like protein GYO_1844 PF06133 Control of competence regulator ComK, YlbF/YmcA GYO_1845 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) GYO_1847 PF01467 Cytidylyltransferase-like GYO_1848 PF07670 Nucleoside recognition GYO_1849 PF01734 Patatin-like phospholipase GYO_1850 PF05362 Lon protease (S16) C-terminal proteolytic domain GYO_1850 PF13180 PDZ domain GYO_1851 PF05636 HIGH Nucleotidyl Transferase GYO_1853 PF02620 Large ribosomal RNA subunit accumulation protein YceD GYO_1856 PF00583 Acetyltransferase (GNAT) family GYO_1857 PF02558 Ketopantoate reductase PanE/ApbA GYO_1857 PF08546 Ketopantoate reductase PanE/ApbA C terminal GYO_1858 PF10079 Bacillithiol biosynthesis BshC GYO_1859 PF02381 MraZ protein, putative antitoxin-like GYO_1860 PF01795 MraW methylase family GYO_1863 PF00905 Penicillin binding protein transpeptidase domain GYO_1863 PF03717 Penicillin-binding Protein dimerisation domain GYO_1863 PF03793 PASTA domain GYO_1864 PF01225 Mur ligase family, catalytic domain GYO_1864 PF02875 Mur ligase family, glutamate ligase domain GYO_1864 PF08245 Mur ligase middle domain GYO_1865 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 GYO_1865 PF00953 Glycosyl transferase family 4 GYO_1866 PF08245 Mur ligase middle domain GYO_1866 PF02875 Mur ligase family, glutamate ligase domain GYO_1867 PF01098 Cell cycle protein GYO_1868 PF03033 Glycosyltransferase family 28 N-terminal domain GYO_1868 PF04101 Glycosyltransferase family 28 C-terminal domain GYO_1869 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain GYO_1869 PF01565 FAD binding domain GYO_1870 PF08478 POTRA domain, FtsQ-type GYO_1871 PF05949 Bacterial protein of unknown function (DUF881) GYO_1872 PF05949 Bacterial protein of unknown function (DUF881) GYO_1873 PF06947 Protein of unknown function (DUF1290) GYO_1874 PF02491 SHS2 domain inserted in FTSA GYO_1875 PF00091 Tubulin/FtsZ family, GTPase domain GYO_1875 PF12327 FtsZ family, C-terminal domain GYO_1877 PF00082 Subtilase family GYO_1877 PF05922 Peptidase inhibitor I9 GYO_1878 PF03419 Sporulation factor SpoIIGA GYO_1879 PF04542 Sigma-70 region 2 GYO_1879 PF04545 Sigma-70, region 4 GYO_1880 PF04545 Sigma-70, region 4 GYO_1880 PF04542 Sigma-70 region 2 GYO_1880 PF04539 Sigma-70 region 3 GYO_1881 PF00005 ABC transporter GYO_1882 PF01546 Peptidase family M20/M25/M40 GYO_1882 PF07687 Peptidase dimerisation domain GYO_1883 PF05239 PRC-barrel domain GYO_1886 PF01168 Alanine racemase, N-terminal domain GYO_1887 PF04472 Cell division protein SepF GYO_1888 PF02325 YGGT family GYO_1889 PF17774 Putative RNA-binding domain in YlmH GYO_1889 PF01479 S4 domain GYO_1890 PF05103 DivIVA protein GYO_1892 PF00133 tRNA synthetases class I (I, L, M and V) GYO_1892 PF08264 Anticodon-binding domain of tRNA GYO_1893 PF01258 Prokaryotic dksA/traR C4-type zinc finger GYO_1894 PF01252 Signal peptidase (SPase) II GYO_1895 PF00849 RNA pseudouridylate synthase GYO_1895 PF01479 S4 domain GYO_1896 PF00156 Phosphoribosyl transferase domain GYO_1897 PF00860 Permease family GYO_1898 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain GYO_1898 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain GYO_1899 PF01979 Amidohydrolase family GYO_1900 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain GYO_1900 PF00117 Glutamine amidotransferase class-I GYO_1901 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain GYO_1901 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain GYO_1901 PF02142 MGS-like domain GYO_1902 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B GYO_1902 PF00175 Oxidoreductase NAD-binding domain GYO_1903 PF01180 Dihydroorotate dehydrogenase GYO_1904 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family GYO_1905 PF00156 Phosphoribosyl transferase domain GYO_1906 PF01507 Phosphoadenosine phosphosulfate reductase family GYO_1907 PF01384 Phosphate transporter family GYO_1908 PF01747 ATP-sulfurylase GYO_1908 PF14306 PUA-like domain GYO_1910 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases GYO_1911 PF01903 CbiX GYO_1914 PF00689 Cation transporting ATPase, C-terminus GYO_1914 PF00690 Cation transporter/ATPase, N-terminus GYO_1915 PF03755 YicC-like family, N-terminal region GYO_1915 PF08340 Domain of unknown function (DUF1732) GYO_1916 PF04025 Domain of unknown function (DUF370) GYO_1917 PF00625 Guanylate kinase GYO_1918 PF01192 RNA polymerase Rpb6 GYO_1919 PF04127 DNA / pantothenate metabolism flavoprotein GYO_1919 PF02441 Flavoprotein GYO_1921 PF00271 Helicase conserved C-terminal domain GYO_1921 PF17764 3′ DNA-binding domain (3′BD) GYO_1921 PF18074 Primosomal protein N C-terminal domain GYO_1921 PF18319 PriA DNA helicase Cys-rich region (CRR) domain GYO_1921 PF04851 Type III restriction enzyme, res subunit GYO_1922 PF01327 Polypeptide deformylase GYO_1923 PF00551 Formyl transferase GYO_1923 PF02911 Formyl transferase, C-terminal domain GYO_1925 PF01189 16S rRNA methyltransferase RsmB/F GYO_1925 PF01029 NusB family GYO_1926 PF04055 Radical SAM superfamily GYO_1928 PF00069 Protein kinase domain GYO_1928 PF03793 PASTA domain GYO_1929 PF16745 RsgA N-terminal domain GYO_1929 PF03193 RsgA GTPase GYO_1930 PF00834 Ribulose-phosphate 3 epimerase family GYO_1931 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain GYO_1931 PF04263 Thiamin pyrophosphokinase, catalytic domain GYO_1932 PF00830 Ribosomal L28 family GYO_1933 PF03780 Asp23 family, cell envelope-related function GYO_1934 PF13684 Dihydroxyacetone kinase family GYO_1934 PF02734 DAK2 domain GYO_1935 PF01842 ACT domain GYO_1935 PF03315 Serine dehydratase beta chain GYO_1936 PF03313 Serine dehydratase alpha chain GYO_1937 PF00270 DEAD/DEAH box helicase GYO_1937 PF00271 Helicase conserved C-terminal domain GYO_1937 PF17191 RecG wedge domain GYO_1938 PF03061 Thioesterase superfamily GYO_1939 PF02504 Fatty acid synthesis protein GYO_1940 PF00698 Acyl transferase domain GYO_1942 PF00550 Phosphopantetheine attachment site GYO_1943 PF14622 Ribonuclease-III-like GYO_1943 PF00035 Double-stranded RNA binding motif GYO_1944 PF02463 RecF/RecN/SMC N terminal domain GYO_1944 PF06470 SMC proteins Flexible Hinge Domain GYO_1945 PF00448 SRP54-type protein, GTPase domain GYO_1945 PF02881 SRP54-type protein, helical bundle domain GYO_1946 PF02369 Bacterial Ig-like domain (group 1) GYO_1947 PF04297 Putative helix-turn-helix protein, YlxM / p13 like GYO_1948 PF02881 SRP54-type protein, helical bundle domain GYO_1948 PF02978 Signal peptide binding domain GYO_1948 PF00448 SRP54-type protein, GTPase domain GYO_1949 PF00886 Ribosomal protein S16 GYO_1951 PF11068 YlqD protein GYO_1952 PF05239 PRC-barrel domain GYO_1952 PF01782 RimM N-terminal domain GYO_1953 PF01746 tRNA (Guanine-1)-methyltransferase GYO_1954 PF01245 Ribosomal protein L19 GYO_1956 PF01926 50S ribosome-binding GTPase GYO_1960 PF01312 FlhB HrpN YscU SpaS Family GYO_1961 PF00549 CoA-ligase GYO_1961 PF08442 ATP-grasp domain GYO_1962 PF02629 CoA binding domain GYO_1962 PF00549 CoA-ligase GYO_1964 PF02481 DNA recombination-mediator protein A GYO_1966 PF01751 Toprim domain GYO_1966 PF01131 DNA topoisomerase GYO_1966 PF01396 Topoisomerase DNA binding C4 zinc finger GYO_1967 PF01134 Glucose inhibited division protein A GYO_1968 PF02899 Phage integrase, N-terminal SAM-like domain GYO_1968 PF00589 Phage integrase family GYO_1969 PF00227 Proteasome subunit GYO_1970 PF00004 ATPase family associated with various cellular activities (AAA) GYO_1970 PF07724 AAA domain (Cdc48 subfamily) GYO_1970 PF10431 C-terminal, D2-small domain, of ClpB protein GYO_1971 PF08222 CodY helix-turn-helix domain GYO_1971 PF06018 CodY GAF-like domain GYO_1972 PF00460 Flagella basal body rod protein GYO_1973 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GYO_1973 PF00460 Flagella basal body rod protein GYO_1974 PF02049 Flagellar hook-basal body complex protein FliE GYO_1975 PF08345 Flagellar M-ring protein C-terminal GYO_1975 PF01514 Secretory protein of YscJ/FliF family GYO_1976 PF01706 FliG C-terminal domain GYO_1976 PF14842 FliG N-terminal domain GYO_1976 PF14841 FliG middle domain GYO_1977 PF02108 Flagellar assembly protein FliH GYO_1978 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GYO_1978 PF18269 T3SS EscN ATPase C-terminal domain GYO_1978 PF02874 ATP synthase alpha/beta family, beta-barrel domain GYO_1979 PF02050 Flagellar FliJ protein GYO_1980 PF03448 MgtE intracellular N domain GYO_1981 PF02120 Flagellar hook-length control protein FliK GYO_1982 PF03963 Flagellar hook capping protein - N-terminal region GYO_1983 PF00460 Flagella basal body rod protein GYO_1983 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GYO_1984 PF06289 Flagellar and Swarming motility proteins GYO_1985 PF03748 Flagellar basal body-associated protein FliL GYO_1986 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term GYO_1986 PF02154 Flagellar motor switch protein FliM GYO_1987 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term GYO_1987 PF04509 CheC-like family GYO_1988 PF00072 Response regulator receiver domain GYO_1989 PF04347 Flagellar biosynthesis protein, FliO GYO_1990 PF00813 FliP family GYO_1991 PF01313 Bacterial export proteins, family 3 GYO_1992 PF01311 Bacterial export proteins, family 1 GYO_1993 PF01312 FlhB HrpN YscU SpaS Family GYO_1994 PF00771 FHIPEP family GYO_1995 PF00448 SRP54-type protein, GTPase domain GYO_1996 PF10609 NUBPL iron-transfer P-loop NTPase GYO_1997 PF01339 CheB methylesterase GYO_1997 PF00072 Response regulator receiver domain GYO_1998 PF02895 Signal transducing histidine kinase, homodimeric domain GYO_1998 PF01584 CheW-like domain GYO_1998 PF07194 P2 response regulator binding domain GYO_1998 PF01627 Hpt domain GYO_1998 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GYO_1999 PF01584 CheW-like domain GYO_2000 PF04509 CheC-like family GYO_2001 PF03975 CheD chemotactic sensory transduction GYO_2002 PF04545 Sigma-70, region 4 GYO_2002 PF04539 Sigma-70 region 3 GYO_2002 PF04542 Sigma-70 region 2 GYO_2004 PF00318 Ribosomal protein S2 GYO_2005 PF00889 Elongation factor TS GYO_2006 PF00696 Amino acid kinase family GYO_2007 PF01765 Ribosome recycling factor GYO_2008 PF01255 Putative undecaprenyl diphosphate synthase GYO_2010 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain GYO_2010 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase GYO_2010 PF13288 DXP reductoisomerase C-terminal domain GYO_2011 PF02163 Peptidase family M50 GYO_2011 PF17820 PDZ domain GYO_2012 PF03129 Anticodon binding domain GYO_2012 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) GYO_2012 PF04073 Aminoacyl-tRNA editing domain GYO_2013 PF14480 DNA polymerase III polC-type N-terminus I GYO_2013 PF00929 Exonuclease GYO_2013 PF14579 Helix-hairpin-helix motif GYO_2013 PF17657 Bacterial DNA polymerase III alpha subunit finger domain GYO_2013 PF07733 Bacterial DNA polymerase III alpha NTPase domain GYO_2013 PF11490 DNA polymerase III polC-type N-terminus II GYO_2013 PF02811 PHP domain GYO_2014 PF17384 RimP C-terminal SH3 domain GYO_2014 PF02576 RimP N-terminal domain GYO_2015 PF08529 NusA N-terminal domain GYO_2015 PF13184 NusA-like KH domain GYO_2015 PF00575 S1 RNA binding domain GYO_2016 PF04296 Protein of unknown function (DUF448) GYO_2017 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family GYO_2019 PF11987 Translation-initiation factor 2 GYO_2019 PF04760 Translation initiation factor IF-2, N-terminal region GYO_2019 PF00009 Elongation factor Tu GTP binding domain GYO_2020 PF04456 Protein of unknown function (DUF503) GYO_2021 PF02033 Ribosome-binding factor A GYO_2023 PF16198 tRNA pseudouridylate synthase B C-terminal domain GYO_2023 PF01509 TruB family pseudouridylate synthase (N terminal domain) GYO_2024 PF06574 FAD synthetase GYO_2024 PF01687 Riboflavin kinase GYO_2025 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain GYO_2025 PF00575 S1 RNA binding domain GYO_2025 PF03725 3' exoribonuclease family, domain 2 GYO_2025 PF01138 3' exoribonuclease family, domain 1 GYO_2025 PF00013 KH domain GYO_2026 PF01522 Polysaccharide deacetylase GYO_2027 PF05193 Peptidase M16 inactive domain GYO_2027 PF00675 Insulinase (Peptidase family M16) GYO_2028 PF05239 PRC-barrel domain GYO_2029 PF16924 Dipicolinate synthase subunit A N-terminal domain GYO_2029 PF01262 Alanine dehydrogenase/PNT, C-terminal domain GYO_2030 PF02441 Flavoprotein GYO_2031 PF02774 Semialdehyde dehydrogenase, dimerisation domain GYO_2031 PF01118 Semialdehyde dehydrogenase, NAD binding domain GYO_2032 PF13840 ACT domain GYO_2032 PF00696 Amino acid kinase family GYO_2033 PF00701 Dihydrodipicolinate synthetase family GYO_2034 PF17770 Ribonuclease J C-terminal domain GYO_2034 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain GYO_2034 PF00753 Metallo-beta-lactamase superfamily GYO_2035 PF00574 Clp protease GYO_2036 PF14035 YlzJ-like protein GYO_2037 PF09397 Ftsk gamma domain GYO_2037 PF01580 FtsK/SpoIIIE family GYO_2037 PF17854 FtsK alpha domain GYO_2038 PF00392 Bacterial regulatory proteins, gntR family GYO_2038 PF07702 UTRA domain GYO_2039 PF07690 Major Facilitator Superfamily GYO_2040 PF05193 Peptidase M16 inactive domain GYO_2041 PF00675 Insulinase (Peptidase family M16) GYO_2041 PF05193 Peptidase M16 inactive domain GYO_2043 PF11588 Protein of unknown function (DUF3243) GYO_2044 PF11868 Protein of unknown function (DUF3388) GYO_2045 PF13464 Domain of unknown function (DUF4115) GYO_2046 PF01066 CDP-alcohol phosphatidyltransferase GYO_2047 PF18146 Damage-inducible protein CinA KH domain GYO_2047 PF02464 Competence-damaged protein GYO_2047 PF00994 Probable molybdopterin binding domain GYO_2048 PF00154 recA bacterial DNA recombination protein GYO_2049 PF00144 Beta-lactamase GYO_2050 PF12072 Domain of unknown function (DUF3552) GYO_2050 PF01966 HD domain GYO_2050 PF00013 KH domain GYO_2051 PF13277 YmdB-like protein GYO_2052 PF04232 Stage V sporulation protein S (SpoVS) GYO_2054 PF08240 Alcohol dehydrogenase GroES-like domain GYO_2054 PF00107 Zinc-binding dehydrogenase GYO_2055 PF00155 Aminotransferase class I and II GYO_2056 PF00919 Uncharacterized protein family UPF0004 GYO_2056 PF01938 TRAM domain GYO_2056 PF04055 Radical SAM superfamily GYO_2057 PF06133 Control of competence regulator ComK, YlbF/YmcA GYO_2058 PF10628 Outer spore coat protein E (CotE) GYO_2060 PF01119 DNA mismatch repair protein, C-terminal domain GYO_2060 PF08676 MutL C terminal dimerisation domain GYO_2061 PF14184 Regulatory protein YrvL GYO_2063 PF00440 Bacterial regulatory proteins, tetR family GYO_2063 PF13977 BetI-type transcriptional repressor, C-terminal GYO_2064 PF00753 Metallo-beta-lactamase superfamily GYO_2065 PF00698 Acyl transferase domain GYO_2066 PF00698 Acyl transferase domain GYO_2067 PF00698 Acyl transferase domain GYO_2067 PF03060 Nitronate monooxygenase GYO_2068 PF00550 Phosphopantetheine attachment site GYO_2069 PF00109 Beta-ketoacyl synthase, N-terminal domain GYO_2069 PF02801 Beta-ketoacyl synthase, C-terminal domain GYO_2070 PF01154 Hydroxymethylglutaryl-coenzyme A synthase N terminal GYO_2070 PF08540 Hydroxymethylglutaryl-coenzyme A synthase C terminal GYO_2071 PF00378 Enoyl-CoA hydratase/isomerase GYO_2072 PF00378 Enoyl-CoA hydratase/isomerase GYO_2073 PF14765 Polyketide synthase dehydratase GYO_2073 PF13193 AMP-binding enzyme C-terminal domain GYO_2073 PF00501 AMP-binding enzyme GYO_2073 PF00668 Condensation domain GYO_2073 PF16197 Ketoacyl-synthetase C-terminal extension GYO_2073 PF00109 Beta-ketoacyl synthase, N-terminal domain GYO_2073 PF02801 Beta-ketoacyl synthase, C-terminal domain GYO_2073 PF08659 KR domain GYO_2073 PF00550 Phosphopantetheine attachment site GYO_2074 PF14765 Polyketide synthase dehydratase GYO_2074 PF02801 Beta-ketoacyl synthase, C-terminal domain GYO_2074 PF08659 KR domain GYO_2074 PF00550 Phosphopantetheine attachment site GYO_2074 PF00109 Beta-ketoacyl synthase, N-terminal domain GYO_2074 PF16197 Ketoacyl-synthetase C-terminal extension GYO_2075 PF16197 Ketoacyl-synthetase C-terminal extension GYO_2075 PF00109 Beta-ketoacyl synthase, N-terminal domain GYO_2075 PF14765 Polyketide synthase dehydratase GYO_2075 PF08659 KR domain GYO_2075 PF02801 Beta-ketoacyl synthase, C-terminal domain GYO_2075 PF08242 Methyltransferase domain GYO_2075 PF00550 Phosphopantetheine attachment site GYO_2076 PF14765 Polyketide synthase dehydratase GYO_2076 PF00550 Phosphopantetheine attachment site GYO_2076 PF02801 Beta-ketoacyl synthase, C-terminal domain GYO_2076 PF00109 Beta-ketoacyl synthase, N-terminal domain GYO_2076 PF16197 Ketoacyl-synthetase C-terminal extension GYO_2076 PF00668 Condensation domain GYO_2076 PF08659 KR domain GYO_2076 PF13193 AMP-binding enzyme C-terminal domain GYO_2076 PF00501 AMP-binding enzyme GYO_2077 PF16197 Ketoacyl-synthetase C-terminal extension GYO_2077 PF00550 Phosphopantetheine attachment site GYO_2077 PF00109 Beta-ketoacyl synthase, N-terminal domain GYO_2077 PF00975 Thioesterase domain GYO_2077 PF14765 Polyketide synthase dehydratase GYO_2077 PF02801 Beta-ketoacyl synthase, C-terminal domain GYO_2077 PF08242 Methyltransferase domain GYO_2078 PF00067 Cytochrome P450 GYO_2082 PF00082 Subtilase family GYO_2085 PF05908 Poly-gamma-glutamate hydrolase GYO_2086 PF02566 OsmC-like protein GYO_2087 PF00893 Small Multidrug Resistance protein GYO_2088 PF00893 Small Multidrug Resistance protein GYO_2090 PF12788 YmaF family GYO_2092 PF17209 Hfq protein GYO_2093 PF14157 YmzC-like protein GYO_2096 PF07972 NrdI Flavodoxin like GYO_2097 PF02867 Ribonucleotide reductase, barrel domain GYO_2097 PF00317 Ribonucleotide reductase, all-alpha domain GYO_2097 PF08343 Ribonucleotide reductase N-terminal GYO_2098 PF00268 Ribonucleotide reductase, small chain GYO_2100 PF05036 Sporulation related domain GYO_2100 PF01520 N-acetylmuramoyl-L-alanine amidase GYO_2102 PF17866 AAA lid domain GYO_2102 PF00004 ATPase family associated with various cellular activities (AAA) GYO_2103 PF13167 GTP-binding GTPase N-terminal GYO_2103 PF01926 50S ribosome-binding GTPase GYO_2103 PF16360 GTP-binding GTPase Middle Region GYO_2104 PF06838 Methionine gamma-lyase GYO_2105 PF13411 MerR HTH family regulatory protein GYO_2106 PF00120 Glutamine synthetase, catalytic domain GYO_2106 PF03951 Glutamine synthetase, beta-Grasp domain GYO_2112 PF04616 Glycosyl hydrolases family 43 GYO_2112 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain GYO_2113 PF00480 ROK family GYO_2114 PF01261 Xylose isomerase-like TIM barrel GYO_2115 PF02782 FGGY family of carbohydrate kinases, C-terminal domain GYO_2115 PF00370 FGGY family of carbohydrate kinases, N-terminal domain GYO_2116 PF00457 Glycosyl hydrolases family 11 GYO_2117 PF00565 Staphylococcal nuclease homologue GYO_2119 PF00083 Sugar (and other) transporter GYO_2120 PF00842 Alanine racemase, C-terminal domain GYO_2120 PF01168 Alanine racemase, N-terminal domain GYO_2123 PF10903 Protein of unknown function (DUF2691) GYO_2124 PF00692 dUTPase GYO_2128 PF00303 Thymidylate synthase GYO_2130 PF15493 Domain of unknown function, YrpD GYO_2131 PF14037 YoqO-like protein GYO_2135 PF08327 Activator of Hsp90 ATPase homolog 1-like protein GYO_2138 PF02417 Chromate transporter GYO_2139 PF03323 Bacillus/Clostridium GerA spore germination protein GYO_2140 PF03845 Spore germination protein GYO_2141 PF05504 Spore germination B3/ GerAC like, C-terminal GYO_2143 PF13761 Domain of unknown function (DUF4166) GYO_2144 PF14158 YndJ-like protein GYO_2147 PF05908 Poly-gamma-glutamate hydrolase GYO_2148 PF10710 Protein of unknown function (DUF2512) GYO_2150 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GYO_2152 PF00717 Peptidase S24-like GYO_2152 PF01726 LexA DNA binding domain GYO_2153 PF01476 LysM domain GYO_2154 PF00239 Resolvase, N terminal domain GYO_2155 PF05979 Bacterial protein of unknown function (DUF896) GYO_2156 PF00456 Transketolase, thiamine diphosphate binding domain GYO_2156 PF02780 Transketolase, C-terminal domain GYO_2156 PF02779 Transketolase, pyrimidine binding domain GYO_2158 PF10747 Sporulation inhibitor of replication protein SirA GYO_2159 PF03672 Uncharacterised protein family (UPF0154) GYO_2160 PF09388 Spo0E like sporulation regulatory protein GYO_2161 PF02683 Cytochrome C biogenesis protein transmembrane region GYO_2162 PF00072 Response regulator receiver domain GYO_2163 PF07301 Protein of unknown function (DUF1453) GYO_2164 PF11084 Protein of unknown function (DUF2621) GYO_2168 PF00330 Aconitase family (aconitate hydratase) GYO_2168 PF00694 Aconitase C-terminal domain GYO_2169 PF00578 AhpC/TSA family GYO_2170 PF13040 Fur-regulated basic protein B GYO_2171 PF08177 Small acid-soluble spore protein N family GYO_2173 PF03061 Thioesterase superfamily GYO_2175 PF01521 Iron-sulphur cluster biosynthesis GYO_2176 PF02660 Glycerol-3-phosphate acyltransferase GYO_2177 PF13380 CoA binding domain GYO_2178 PF00204 DNA gyrase B GYO_2178 PF00986 DNA gyrase B subunit, carboxyl terminus GYO_2178 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GYO_2178 PF01751 Toprim domain GYO_2179 PF03989 DNA gyrase C-terminal domain, beta-propeller GYO_2179 PF00521 DNA gyrase/topoisomerase IV, subunit A GYO_2182 PF01235 Sodium:alanine symporter family GYO_2183 PF00942 Cellulose binding domain GYO_2183 PF00150 Cellulase (glycosyl hydrolase family 5) GYO_2184 PF17452 Uncharacterized YnfE-like GYO_2185 PF04138 GtrA-like protein GYO_2186 PF00483 Nucleotidyl transferase GYO_2187 PF09335 SNARE associated Golgi protein GYO_2189 PF01039 Carboxyl transferase domain GYO_2190 PF00378 Enoyl-CoA hydratase/isomerase GYO_2191 PF00682 HMGL-like GYO_2192 PF00364 Biotin-requiring enzyme GYO_2193 PF00289 Biotin carboxylase, N-terminal domain GYO_2193 PF02785 Biotin carboxylase C-terminal domain GYO_2193 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain GYO_2194 PF13193 AMP-binding enzyme C-terminal domain GYO_2194 PF00501 AMP-binding enzyme GYO_2195 PF02770 Acyl-CoA dehydrogenase, middle domain GYO_2195 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GYO_2195 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GYO_2198 PF02638 Glycosyl hydrolase-like 10 GYO_2199 PF07098 Protein of unknown function (DUF1360) GYO_2200 PF13193 AMP-binding enzyme C-terminal domain GYO_2200 PF00668 Condensation domain GYO_2200 PF00550 Phosphopantetheine attachment site GYO_2200 PF00975 Thioesterase domain GYO_2200 PF00501 AMP-binding enzyme GYO_2201 PF00668 Condensation domain GYO_2201 PF13193 AMP-binding enzyme C-terminal domain GYO_2201 PF00550 Phosphopantetheine attachment site GYO_2201 PF00501 AMP-binding enzyme GYO_2202 PF16197 Ketoacyl-synthetase C-terminal extension GYO_2202 PF00109 Beta-ketoacyl synthase, N-terminal domain GYO_2202 PF00550 Phosphopantetheine attachment site GYO_2202 PF13193 AMP-binding enzyme C-terminal domain GYO_2202 PF00501 AMP-binding enzyme GYO_2202 PF00202 Aminotransferase class-III GYO_2202 PF00668 Condensation domain GYO_2202 PF02801 Beta-ketoacyl synthase, C-terminal domain GYO_2203 PF00698 Acyl transferase domain GYO_2204 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family GYO_2205 PF01263 Aldose 1-epimerase GYO_2206 PF01554 MatE GYO_2207 PF16800 IseA DL-endopeptidase inhibitor GYO_2209 PF00589 Phage integrase family GYO_2211 PF12728 Helix-turn-helix domain GYO_2213 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GYO_2213 PF03466 LysR substrate binding domain GYO_2214 PF08240 Alcohol dehydrogenase GroES-like domain GYO_2214 PF00107 Zinc-binding dehydrogenase GYO_2215 PF07992 Pyridine nucleotide-disulphide oxidoreductase GYO_2215 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster GYO_2216 PF01493 GXGXG motif GYO_2216 PF01645 Conserved region in glutamate synthase GYO_2216 PF04898 Glutamate synthase central domain GYO_2216 PF00310 Glutamine amidotransferases class-II GYO_2217 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GYO_2217 PF03466 LysR substrate binding domain GYO_2218 PF00696 Amino acid kinase family GYO_2218 PF01472 PUA domain GYO_2219 PF14748 Pyrroline-5-carboxylate reductase dimerisation GYO_2219 PF03807 NADP oxidoreductase coenzyme F420-dependent GYO_2220 PF02334 Replication terminator protein GYO_2222 PF00067 Cytochrome P450 GYO_2223 PF00106 short chain dehydrogenase GYO_2224 PF06103 Bacterial protein of unknown function (DUF948) GYO_2230 PF00005 ABC transporter GYO_2232 PF07690 Major Facilitator Superfamily GYO_2233 PF00370 FGGY family of carbohydrate kinases, N-terminal domain GYO_2233 PF02782 FGGY family of carbohydrate kinases, C-terminal domain GYO_2234 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GYO_2234 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GYO_2235 PF01568 Molydopterin dinucleotide binding domain GYO_2235 PF00384 Molybdopterin oxidoreductase GYO_2235 PF04879 Molybdopterin oxidoreductase Fe4S4 domain GYO_2238 PF17094 Uncharacterised protein family (UPF0715) GYO_2240 PF13217 Protein of unknown function (DUF4025) GYO_2241 PF00672 HAMP domain GYO_2241 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GYO_2241 PF05227 CHASE3 domain GYO_2242 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal GYO_2242 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal GYO_2243 PF03330 Lytic transglycolase GYO_2244 PF06912 Protein of unknown function (DUF1275) GYO_2245 PF00544 Pectate lyase GYO_2246 PF00106 short chain dehydrogenase GYO_2249 PF02586 SOS response associated peptidase (SRAP) GYO_2251 PF00190 Cupin GYO_2252 PF16302 Domain of unknown function (DUF4944) GYO_2256 PF04294 VanW like protein GYO_2257 PF11188 Protein of unknown function (DUF2975) GYO_2258 PF13443 Cro/C1-type HTH DNA-binding domain GYO_2259 PF05675 Protein of unknown function (DUF817) GYO_2260 PF03466 LysR substrate binding domain GYO_2260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GYO_2261 PF00892 EamA-like transporter family GYO_2267 PF01965 DJ-1/PfpI family GYO_2271 PF18416 N-acetylglucosamine binding protein domain 2 GYO_2271 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading GYO_2273 PF05163 DinB family GYO_2274 PF13302 Acetyltransferase (GNAT) domain GYO_2275 PF00457 Glycosyl hydrolases family 11 GYO_2279 PF00722 Glycosyl hydrolases family 16 GYO_2281 PF00067 Cytochrome P450 GYO_2286 PF01174 SNO glutamine amidotransferase family GYO_2287 PF01680 SOR/SNZ family GYO_2288 PF00392 Bacterial regulatory proteins, gntR family GYO_2288 PF00155 Aminotransferase class I and II GYO_2293 PF00294 pfkB family carbohydrate kinase GYO_2294 PF14602 Hexapeptide repeat of succinyl-transferase GYO_2294 PF12464 Maltose acetyltransferase GYO_2297 PF17094 Uncharacterised protein family (UPF0715) GYO_2298 PF11799 impB/mucB/samB family C-terminal domain GYO_2298 PF11798 IMS family HHH motif GYO_2298 PF00817 impB/mucB/samB family GYO_2299 PF09346 SMI1 / KNR4 family (SUKH-1) GYO_2300 PF01593 Flavin containing amine oxidoreductase GYO_2302 PF01588 Putative tRNA binding domain GYO_2303 PF07883 Cupin domain GYO_2303 PF12833 Helix-turn-helix domain GYO_2306 PF13305 Tetracyclin repressor-like, C-terminal domain GYO_2306 PF00440 Bacterial regulatory proteins, tetR family GYO_2307 PF00753 Metallo-beta-lactamase superfamily GYO_2308 PF06445 GyrI-like small molecule binding domain GYO_2309 PF13280 WYL domain GYO_2309 PF08279 HTH domain GYO_2311 PF01022 Bacterial regulatory protein, arsR family GYO_2313 PF04238 Protein of unknown function (DUF420) GYO_2314 PF18846 Bacterial archaeo-eukaryotic release factor family 5 GYO_2318 PF00487 Fatty acid desaturase GYO_2320 PF07730 Histidine kinase GYO_2321 PF00196 Bacterial regulatory proteins, luxR family GYO_2321 PF00072 Response regulator receiver domain GYO_2322 PF00474 Sodium:solute symporter family GYO_2325 PF01476 LysM domain GYO_2325 PF06725 3D domain GYO_2326 PF00570 HRDC domain GYO_2326 PF09382 RQC domain GYO_2326 PF16124 RecQ zinc-binding GYO_2326 PF00270 DEAD/DEAH box helicase GYO_2326 PF00271 Helicase conserved C-terminal domain GYO_2327 PF02525 Flavodoxin-like fold GYO_2328 PF01258 Prokaryotic dksA/traR C4-type zinc finger GYO_2330 PF08000 Bacterial PH domain GYO_2333 PF00171 Aldehyde dehydrogenase family GYO_2334 PF13249 Squalene-hopene cyclase N-terminal domain GYO_2334 PF13243 Squalene-hopene cyclase C-terminal domain GYO_2335 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain GYO_2335 PF02777 Iron/manganese superoxide dismutases, C-terminal domain GYO_2336 PF00209 Sodium:neurotransmitter symporter family GYO_2337 PF01758 Sodium Bile acid symporter family GYO_2338 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) GYO_2338 PF00364 Biotin-requiring enzyme GYO_2338 PF02817 e3 binding domain GYO_2339 PF00676 Dehydrogenase E1 component GYO_2339 PF16870 2-oxoglutarate dehydrogenase C-terminal GYO_2339 PF02779 Transketolase, pyrimidine binding domain GYO_2340 PF00092 von Willebrand factor type A domain GYO_2341 PF07728 AAA domain (dynein-related subfamily) GYO_2342 PF13627 Prokaryotic lipoprotein-attachment site GYO_2342 PF00080 Copper/zinc superoxide dismutase (SODC) GYO_2343 PF00877 NlpC/P60 family GYO_2343 PF01476 LysM domain GYO_2344 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase GYO_2345 PF02457 DisA bacterial checkpoint controller nucleotide-binding GYO_2345 PF10372 Bacterial membrane-spanning protein N-terminus GYO_2346 PF01554 MatE GYO_2347 PF01740 STAS domain GYO_2348 PF02585 GlcNAc-PI de-N-acetylase GYO_2349 PF08830 Protein of unknown function (DUF1806) GYO_2351 PF00892 EamA-like transporter family GYO_2354 PF02447 GntP family permease GYO_2356 PF14552 Tautomerase enzyme GYO_2358 PF01638 HxlR-like helix-turn-helix GYO_2359 PF00881 Nitroreductase family GYO_2360 PF01738 Dienelactone hydrolase family GYO_2361 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GYO_2362 PF11755 Protein of unknown function (DUF3311) GYO_2363 PF00474 Sodium:solute symporter family GYO_2364 PF01471 Putative peptidoglycan binding domain GYO_2364 PF03572 Peptidase family S41 GYO_2364 PF17820 PDZ domain GYO_2365 PF08241 Methyltransferase domain GYO_2367 PF02557 D-alanyl-D-alanine carboxypeptidase GYO_2368 PF01048 Phosphorylase superfamily GYO_2370 PF14191 YodL-like GYO_2371 PF01569 PAP2 superfamily GYO_2372 PF14162 YozD-like protein GYO_2375 PF06855 YozE SAM-like fold GYO_2376 PF14122 YokU-like protein, putative antitoxin GYO_2377 PF12544 Lysine-2,3-aminomutase GYO_2378 PF00583 Acetyltransferase (GNAT) family GYO_2379 PF01546 Peptidase family M20/M25/M40 GYO_2379 PF07687 Peptidase dimerisation domain GYO_2380 PF01144 Coenzyme A transferase GYO_2381 PF01144 Coenzyme A transferase GYO_2382 PF00202 Aminotransferase class-III GYO_2384 PF00583 Acetyltransferase (GNAT) family GYO_2385 PF00535 Glycosyl transferase family 2 GYO_2388 PF12996 DUF based on E. rectale Gene description (DUF3880) GYO_2389 PF02333 Phytase GYO_2390 PF02719 Polysaccharide biosynthesis protein GYO_2391 PF01641 SelR domain GYO_2392 PF01625 Peptide methionine sulfoxide reductase GYO_2393 PF01047 MarR family GYO_2394 PF01554 MatE GYO_2395 PF17431 Uncharacterized YmpT-like GYO_2396 PF09911 Uncharacterized protein conserved in bacteria (DUF2140) GYO_2397 PF13472 GDSL-like Lipase/Acylhydrolase family GYO_2398 PF02630 SCO1/SenC GYO_2399 PF10751 Protein of unknown function (DUF2535) GYO_2400 PF00291 Pyridoxal-phosphate dependent enzyme GYO_2400 PF00585 C-terminal regulatory domain of Threonine dehydratase GYO_2401 PF08461 Ribonuclease R winged-helix domain GYO_2401 PF00158 Sigma-54 interaction domain GYO_2402 PF03006 Haemolysin-III related GYO_2404 PF00186 Dihydrofolate reductase GYO_2405 PF00303 Thymidylate synthase GYO_2406 PF04608 Phosphatidylglycerophosphatase A GYO_2407 PF14005 YpjP-like protein GYO_2408 PF04445 Putative SAM-dependent methyltransferase GYO_2409 PF06491 Disulphide isomerase GYO_2410 PF00920 Dehydratase family GYO_2411 PF13769 Virulence factor GYO_2411 PF08712 Scaffold protein Nfu/NifU N terminal GYO_2412 PF01966 HD domain GYO_2413 PF00255 Glutathione peroxidase GYO_2414 PF04204 Homoserine O-succinyltransferase GYO_2415 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase GYO_2415 PF00534 Glycosyl transferases group 1 GYO_2417 PF00313 'Cold-shock' DNA-binding domain GYO_2419 PF10819 Protein of unknown function (DUF2564) GYO_2420 PF10782 Zinc-finger GYO_2421 PF13456 Reverse transcriptase-like GYO_2422 PF02592 Putative vitamin uptake transporter GYO_2423 PF13456 Reverse transcriptase-like GYO_2425 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain GYO_2425 PF01367 5'-3' exonuclease, C-terminal SAM fold GYO_2427 PF10752 Protein of unknown function (DUF2533) GYO_2428 PF00350 Dynamin family GYO_2429 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family GYO_2430 PF00195 Chalcone and stilbene synthases, N-terminal domain GYO_2430 PF02797 Chalcone and stilbene synthases, C-terminal domain GYO_2431 PF00860 Permease family GYO_2432 PF00156 Phosphoribosyl transferase domain GYO_2433 PF02074 Carboxypeptidase Taq (M32) metallopeptidase GYO_2434 PF03812 2-keto-3-deoxygluconate permease GYO_2435 PF01081 KDPG and KHG aldolase GYO_2436 PF00294 pfkB family carbohydrate kinase GYO_2437 PF00356 Bacterial regulatory proteins, lacI family GYO_2439 PF04962 KduI/IolB family GYO_2441 PF13307 Helicase C-terminal domain GYO_2443 PF02926 THUMP domain GYO_2443 PF01170 Putative RNA methylase family UPF0020 GYO_2444 PF05103 DivIVA protein GYO_2445 PF06908 YspA SLOG family GYO_2447 PF13482 RNase_H superfamily GYO_2448 PF00271 Helicase conserved C-terminal domain GYO_2448 PF00270 DEAD/DEAH box helicase GYO_2448 PF09369 Domain of unknown function (DUF1998) GYO_2449 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 GYO_2451 PF14179 YppG-like protein GYO_2452 PF14178 YppF-like protein GYO_2453 PF08807 Bacterial domain of unknown function (DUF1798) GYO_2454 PF17522 Family of unknown function (DUF5446) GYO_2456 PF10720 Protein of unknown function (DUF2515) GYO_2457 PF03838 Recombination protein U GYO_2458 PF00905 Penicillin binding protein transpeptidase domain GYO_2458 PF00912 Transglycosylase GYO_2460 PF00730 HhH-GPD superfamily base excision DNA repair protein GYO_2460 PF00633 Helix-hairpin-helix motif GYO_2460 PF10576 Iron-sulfur binding domain of endonuclease III GYO_2461 PF07261 Replication initiation and membrane attachment GYO_2462 PF00152 tRNA synthetases class II (D, K and N) GYO_2462 PF01336 OB-fold nucleic acid binding domain GYO_2463 PF00155 Aminotransferase class I and II GYO_2464 PF03413 Peptidase propeptide and YPEB domain GYO_2464 PF17881 Domain of unknown function (DUF5590) GYO_2465 PF14084 Protein of unknown function (DUF4264) GYO_2466 PF04851 Type III restriction enzyme, res subunit GYO_2466 PF00929 Exonuclease GYO_2466 PF13307 Helicase C-terminal domain GYO_2467 PF02261 Aspartate decarboxylase GYO_2468 PF02569 Pantoate-beta-alanine ligase GYO_2469 PF02548 Ketopantoate hydroxymethyltransferase GYO_2471 PF08279 HTH domain GYO_2471 PF03099 Biotin/lipoate A/B protein ligase family GYO_2471 PF02237 Biotin protein ligase C terminal domain GYO_2472 PF13735 tRNA nucleotidyltransferase domain 2 putative GYO_2472 PF12627 Probable RNA and SrmB- binding site of polymerase A GYO_2472 PF01743 Poly A polymerase head domain GYO_2473 PF13439 Glycosyltransferase Family 4 GYO_2473 PF00534 Glycosyl transferases group 1 GYO_2474 PF02585 GlcNAc-PI de-N-acetylase GYO_2475 PF02142 MGS-like domain GYO_2476 PF01113 Dihydrodipicolinate reductase, N-terminus GYO_2476 PF05173 Dihydrodipicolinate reductase, C-terminus GYO_2477 PF03819 MazG nucleotide pyrophosphohydrolase domain GYO_2478 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) GYO_2478 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 GYO_2480 PF07187 Protein of unknown function (DUF1405) GYO_2481 PF00032 Cytochrome b(C-terminal)/b6/petD GYO_2481 PF13442 Cytochrome C oxidase, cbb3-type, subunit III GYO_2482 PF00033 Cytochrome b/b6/petB GYO_2483 PF00355 Rieske [2Fe-2S] domain GYO_2484 PF10673 Protein of unknown function (DUF2487) GYO_2485 PF08864 UPF0302 domain GYO_2485 PF08858 IDEAL domain GYO_2487 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) GYO_2488 PF02153 Prephenate dehydrogenase GYO_2488 PF01842 ACT domain GYO_2489 PF00155 Aminotransferase class I and II GYO_2490 PF00290 Tryptophan synthase alpha chain GYO_2491 PF00291 Pyridoxal-phosphate dependent enzyme GYO_2492 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase GYO_2493 PF00218 Indole-3-glycerol phosphate synthase GYO_2494 PF00591 Glycosyl transferase family, a/b domain GYO_2494 PF02885 Glycosyl transferase family, helical bundle domain GYO_2495 PF00425 chorismate binding enzyme GYO_2495 PF04715 Anthranilate synthase component I, N terminal region GYO_2496 PF07736 Chorismate mutase type I GYO_2497 PF01761 3-dehydroquinate synthase GYO_2498 PF01264 Chorismate synthase GYO_2499 PF03705 CheR methyltransferase, all-alpha domain GYO_2499 PF01739 CheR methyltransferase, SAM binding domain GYO_2501 PF00334 Nucleoside diphosphate kinase GYO_2502 PF00348 Polyprenyl synthetase GYO_2503 PF01209 ubiE/COQ5 methyltransferase family GYO_2504 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 GYO_2505 PF02081 Tryptophan RNA-binding attenuator protein GYO_2506 PF01227 GTP cyclohydrolase I GYO_2507 PF00216 Bacterial DNA-binding protein GYO_2511 PF10966 Protein of unknown function (DUF2768) GYO_2512 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus GYO_2512 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus GYO_2513 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal GYO_2513 PF01926 50S ribosome-binding GTPase GYO_2515 PF14045 YIEGIA protein GYO_2517 PF14140 YpzI-like protein GYO_2518 PF01070 FMN-dependent dehydrogenase GYO_2519 PF00575 S1 RNA binding domain GYO_2520 PF02224 Cytidylate kinase GYO_2521 PF17313 Family of unknown function (DUF5359) GYO_2522 PF12945 Flagellar protein YcgR GYO_2522 PF07238 PilZ domain GYO_2523 PF14620 YpeB sporulation GYO_2523 PF03413 Peptidase propeptide and YPEB domain GYO_2524 PF07486 Cell Wall Hydrolase GYO_2524 PF01471 Putative peptidoglycan binding domain GYO_2526 PF13367 PrsW family intramembrane metalloprotease GYO_2528 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GYO_2528 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain GYO_2529 PF05389 Negative regulator of genetic competence (MecA) GYO_2530 PF00149 Calcineurin-like phosphoesterase GYO_2531 PF10864 Protein of unknown function (DUF2663) GYO_2532 PF01476 LysM domain GYO_2533 PF02517 CPBP intramembrane metalloprotease GYO_2534 PF00270 DEAD/DEAH box helicase GYO_2534 PF00271 Helicase conserved C-terminal domain GYO_2535 PF14493 Helix-turn-helix domain GYO_2537 PF12822 ECF transporter, substrate-specific component GYO_2539 PF01842 ACT domain GYO_2539 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GYO_2539 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GYO_2540 PF01487 Type I 3-dehydroquinase GYO_2542 PF04542 Sigma-70 region 2 GYO_2542 PF08281 Sigma-70, region 4 GYO_2543 PF00672 HAMP domain GYO_2543 PF00512 His Kinase A (phospho-acceptor) domain GYO_2543 PF18698 Histidine kinase sensor domain GYO_2543 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GYO_2543 PF00989 PAS fold GYO_2544 PF00486 Transcriptional regulatory protein, C terminal GYO_2544 PF00072 Response regulator receiver domain GYO_2545 PF01578 Cytochrome C assembly protein GYO_2546 PF05140 ResB-like family GYO_2547 PF00578 AhpC/TSA family GYO_2549 PF00849 RNA pseudouridylate synthase GYO_2549 PF01479 S4 domain GYO_2551 PF07670 Nucleoside recognition GYO_2552 PF07943 Penicillin-binding protein 5, C-terminal domain GYO_2552 PF00768 D-alanyl-D-alanine carboxypeptidase GYO_2553 PF13047 Protein of unknown function (DUF3907) GYO_2554 PF04079 Segregation and condensation complex subunit ScpB GYO_2555 PF02616 Segregation and condensation protein ScpA GYO_2556 PF03745 Domain of unknown function (DUF309) GYO_2557 PF00583 Acetyltransferase (GNAT) family GYO_2558 PF00885 6,7-dimethyl-8-ribityllumazine synthase GYO_2559 PF00925 GTP cyclohydrolase II GYO_2559 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase GYO_2560 PF00677 Lumazine binding domain GYO_2561 PF01872 RibD C-terminal domain GYO_2561 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region GYO_2564 PF10502 Signal peptidase, peptidase S26 GYO_2567 PF09855 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) GYO_2568 PF10676 Spore germination protein gerPA/gerPF GYO_2569 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD GYO_2570 PF06207 Protein of unknown function (DUF1002) GYO_2571 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain GYO_2571 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain GYO_2575 PF07451 Stage V sporulation protein AD (SpoVAD) GYO_2576 PF03862 SpoVAC/SpoVAEB sporulation membrane protein GYO_2577 PF13782 Stage V sporulation protein AB GYO_2578 PF12164 Stage V sporulation protein AA GYO_2579 PF04539 Sigma-70 region 3 GYO_2579 PF04542 Sigma-70 region 2 GYO_2579 PF04545 Sigma-70, region 4 GYO_2580 PF13581 Histidine kinase-like ATPase domain GYO_2581 PF01740 STAS domain GYO_2584 PF01048 Phosphorylase superfamily GYO_2585 PF01676 Metalloenzyme superfamily GYO_2586 PF00589 Phage integrase family GYO_2586 PF02899 Phage integrase, N-terminal SAM-like domain GYO_2587 PF14004 Protein of unknown function (DUF4227) GYO_2588 PF01475 Ferric uptake regulator family GYO_2589 PF01944 Stage II sporulation protein M GYO_2591 PF03949 Malic enzyme, NAD binding domain GYO_2591 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GYO_2591 PF00390 Malic enzyme, N-terminal domain GYO_2592 PF03553 Na+/H+ antiporter family GYO_2593 PF00206 Lyase GYO_2593 PF10415 Fumarase C C-terminus GYO_2594 PF00710 Asparaginase, N-terminal GYO_2594 PF17763 Glutaminase/Asparaginase C-terminal domain GYO_2595 PF01381 Helix-turn-helix GYO_2597 PF00293 NUDIX domain GYO_2598 PF13072 Mother cell inhibitor of FtsZ GYO_2599 PF00248 Aldo/keto reductase family GYO_2600 PF13025 Protein of unknown function (DUF3886) GYO_2601 PF12146 Serine aminopeptidase, S33 GYO_2602 PF01098 Cell cycle protein GYO_2603 PF01098 Cell cycle protein GYO_2604 PF06803 Protein of unknown function (DUF1232) GYO_2605 PF10827 Protein of unknown function (DUF2552) GYO_2606 PF01521 Iron-sulphur cluster biosynthesis GYO_2607 PF04229 GrpB protein GYO_2607 PF13673 Acetyltransferase (GNAT) domain GYO_2608 PF03992 Antibiotic biosynthesis monooxygenase GYO_2609 PF00583 Acetyltransferase (GNAT) family GYO_2610 PF08863 YolD-like protein GYO_2611 PF00817 impB/mucB/samB family GYO_2611 PF11799 impB/mucB/samB family C-terminal domain GYO_2612 PF14164 YqzH-like protein GYO_2616 PF07690 Major Facilitator Superfamily GYO_2619 PF00485 Phosphoribulokinase / Uridine kinase family GYO_2620 PF00291 Pyridoxal-phosphate dependent enzyme GYO_2621 PF00106 short chain dehydrogenase GYO_2622 PF00753 Metallo-beta-lactamase superfamily GYO_2623 PF14748 Pyrroline-5-carboxylate reductase dimerisation GYO_2623 PF03807 NADP oxidoreductase coenzyme F420-dependent GYO_2624 PF01546 Peptidase family M20/M25/M40 GYO_2625 PF00724 NADH:flavin oxidoreductase / NADH oxidase family GYO_2626 PF12146 Serine aminopeptidase, S33 GYO_2627 PF00471 Ribosomal protein L33 GYO_2628 PF12706 Beta-lactamase superfamily domain GYO_2630 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain GYO_2630 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain GYO_2631 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase GYO_2631 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain GYO_2632 PF11798 IMS family HHH motif GYO_2632 PF00817 impB/mucB/samB family GYO_2632 PF11799 impB/mucB/samB family C-terminal domain GYO_2634 PF02096 60Kd inner membrane protein GYO_2635 PF09844 Uncharacterized conserved protein (COG2071) GYO_2636 PF01546 Peptidase family M20/M25/M40 GYO_2636 PF07687 Peptidase dimerisation domain GYO_2637 PF01039 Carboxyl transferase domain GYO_2639 PF03734 L,D-transpeptidase catalytic domain GYO_2640 PF06081 Aromatic acid exporter family member 1 GYO_2640 PF11728 Putative aromatic acid exporter C-terminal domain GYO_2641 PF00005 ABC transporter GYO_2642 PF00528 Binding-protein-dependent transport system inner membrane component GYO_2643 PF00497 Bacterial extracellular solute-binding proteins, family 3 GYO_2644 PF06491 Disulphide isomerase GYO_2645 PF00781 Diacylglycerol kinase catalytic domain GYO_2646 PF07690 Major Facilitator Superfamily GYO_2647 PF13411 MerR HTH family regulatory protein GYO_2647 PF06445 GyrI-like small molecule binding domain GYO_2648 PF00364 Biotin-requiring enzyme GYO_2648 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) GYO_2648 PF02817 e3 binding domain GYO_2649 PF02779 Transketolase, pyrimidine binding domain GYO_2649 PF02780 Transketolase, C-terminal domain GYO_2650 PF00676 Dehydrogenase E1 component GYO_2651 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain GYO_2651 PF07992 Pyridine nucleotide-disulphide oxidoreductase GYO_2652 PF00871 Acetokinase family GYO_2653 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GYO_2653 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain GYO_2654 PF01515 Phosphate acetyl/butaryl transferase GYO_2655 PF02954 Bacterial regulatory protein, Fis family GYO_2655 PF00158 Sigma-54 interaction domain GYO_2655 PF00989 PAS fold GYO_2656 PF11118 Protein of unknown function (DUF2627) GYO_2658 PF03972 MmgE/PrpD family GYO_2659 PF00285 Citrate synthase, C-terminal domain GYO_2660 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GYO_2660 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GYO_2660 PF02770 Acyl-CoA dehydrogenase, middle domain GYO_2661 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GYO_2661 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain GYO_2662 PF00108 Thiolase, N-terminal domain GYO_2662 PF02803 Thiolase, C-terminal domain GYO_2664 PF03009 Glycerophosphoryl diester phosphodiesterase family GYO_2665 PF01520 N-acetylmuramoyl-L-alanine amidase GYO_2668 PF00724 NADH:flavin oxidoreductase / NADH oxidase family GYO_2673 PF18766 SWI2/SNF2 ATPase GYO_2673 PF11867 Domain of unknown function (DUF3387) GYO_2673 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) GYO_2678 PF00589 Phage integrase family GYO_2678 PF02899 Phage integrase, N-terminal SAM-like domain GYO_2679 PF08769 Sporulation initiation factor Spo0A C terminal GYO_2679 PF00072 Response regulator receiver domain GYO_2681 PF17820 PDZ domain GYO_2681 PF05580 SpoIVB peptidase S55 GYO_2682 PF13476 AAA domain GYO_2684 PF02863 Arginine repressor, C-terminal domain GYO_2684 PF01316 Arginine repressor, DNA binding domain GYO_2685 PF01479 S4 domain GYO_2685 PF01728 FtsJ-like methyltransferase GYO_2686 PF02779 Transketolase, pyrimidine binding domain GYO_2686 PF13292 1-deoxy-D-xylulose-5-phosphate synthase GYO_2686 PF02780 Transketolase, C-terminal domain GYO_2688 PF00348 Polyprenyl synthetase GYO_2689 PF02609 Exonuclease VII small subunit GYO_2690 PF02601 Exonuclease VII, large subunit GYO_2690 PF13742 OB-fold nucleic acid binding domain GYO_2691 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain GYO_2691 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain GYO_2692 PF01029 NusB family GYO_2693 PF03780 Asp23 family, cell envelope-related function GYO_2694 PF02785 Biotin carboxylase C-terminal domain GYO_2694 PF00289 Biotin carboxylase, N-terminal domain GYO_2694 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain GYO_2695 PF00364 Biotin-requiring enzyme GYO_2696 PF12685 SpoIIIAH-like protein GYO_2698 PF09581 Stage III sporulation protein AF (Spore_III_AF) GYO_2699 PF09546 Stage III sporulation protein AE (spore_III_AE) GYO_2700 PF06686 Stage III sporulation protein AC/AD protein family GYO_2701 PF06686 Stage III sporulation protein AC/AD protein family GYO_2702 PF09548 Stage III sporulation protein AB (spore_III_AB) GYO_2704 PF10942 Protein of unknown function (DUF2619) GYO_2705 PF09285 Elongation factor P, C-terminal GYO_2705 PF01132 Elongation factor P (EF-P) OB domain GYO_2705 PF08207 Elongation factor P (EF-P) KOW-like domain GYO_2706 PF01321 Creatinase/Prolidase N-terminal domain GYO_2706 PF00557 Metallopeptidase family M24 GYO_2707 PF01220 Dehydroquinase class II GYO_2708 PF11085 Conserved membrane protein YqhR GYO_2709 PF07136 Protein of unknown function (DUF1385) GYO_2711 PF01734 Patatin-like phospholipase GYO_2712 PF01325 Iron dependent repressor, N-terminal DNA binding domain GYO_2712 PF02742 Iron dependent repressor, metal binding and dimerisation domain GYO_2713 PF03099 Biotin/lipoate A/B protein ligase family GYO_2714 PF00581 Rhodanese-like domain GYO_2715 PF02347 Glycine cleavage system P-protein GYO_2716 PF02347 Glycine cleavage system P-protein GYO_2717 PF08669 Glycine cleavage T-protein C-terminal barrel domain GYO_2717 PF01571 Aminomethyltransferase folate-binding domain GYO_2718 PF00271 Helicase conserved C-terminal domain GYO_2718 PF00176 SNF2 family N-terminal domain GYO_2719 PF11079 Bacterial protein YqhG of unknown function GYO_2720 PF08671 Anti-repressor SinI GYO_2721 PF01381 Helix-turn-helix GYO_2721 PF08671 Anti-repressor SinI GYO_2722 PF12389 Camelysin metallo-endopeptidase GYO_2725 PF13028 Protein of unknown function (DUF3889) GYO_2726 PF14038 YqzE-like protein GYO_2727 PF14173 ComG operon protein 7 GYO_2728 PF15980 Putative Competence protein ComGF GYO_2732 PF07963 Prokaryotic N-terminal methylation motif GYO_2733 PF07963 Prokaryotic N-terminal methylation motif GYO_2734 PF00482 Type II secretion system (T2SS), protein F GYO_2735 PF00437 Type II/IV secretion system protein GYO_2736 PF00571 CBS domain GYO_2737 PF01544 CorA-like Mg2+ transporter protein GYO_2738 PF03471 Transporter associated domain GYO_2738 PF01595 Cyclin M transmembrane N-terminal domain GYO_2738 PF00571 CBS domain GYO_2739 PF01740 STAS domain GYO_2739 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain GYO_2741 PF03960 ArsC family GYO_2742 PF11117 Protein of unknown function (DUF2626) GYO_2743 PF00753 Metallo-beta-lactamase superfamily GYO_2744 PF10958 Protein of unknown function (DUF2759) GYO_2745 PF01910 Thiamine-binding protein GYO_2747 PF00246 Zinc carboxypeptidase GYO_2748 PF00884 Sulfatase GYO_2749 PF00480 ROK family GYO_2750 PF06014 Bacterial protein of unknown function (DUF910) GYO_2752 PF01694 Rhomboid family GYO_2755 PF01812 5-formyltetrahydrofolate cyclo-ligase family GYO_2756 PF00534 Glycosyl transferases group 1 GYO_2756 PF13439 Glycosyltransferase Family 4 GYO_2760 PF00005 ABC transporter GYO_2761 PF00005 ABC transporter GYO_2762 PF00528 Binding-protein-dependent transport system inner membrane component GYO_2763 PF00528 Binding-protein-dependent transport system inner membrane component GYO_2764 PF12849 PBP superfamily domain GYO_2766 PF07690 Major Facilitator Superfamily GYO_2767 PF02777 Iron/manganese superoxide dismutases, C-terminal domain GYO_2767 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain GYO_2768 PF04306 Protein of unknown function (DUF456) GYO_2769 PF06691 Protein of unknown function (DUF1189) GYO_2771 PF04551 GcpE protein GYO_2774 PF01475 Ferric uptake regulator family GYO_2775 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) GYO_2775 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 GYO_2776 PF11116 Protein of unknown function (DUF2624) GYO_2777 PF01261 Xylose isomerase-like TIM barrel GYO_2778 PF00271 Helicase conserved C-terminal domain GYO_2778 PF00270 DEAD/DEAH box helicase GYO_2779 PF14181 YqfQ-like protein GYO_2780 PF02401 LytB protein GYO_2781 PF01784 NIF3 (NGG1p interacting factor 3) GYO_2782 PF04816 tRNA (adenine(22)-N(1))-methyltransferase GYO_2783 PF13442 Cytochrome C oxidase, cbb3-type, subunit III GYO_2785 PF00140 Sigma-70 factor, region 1.2 GYO_2785 PF03979 Sigma-70 factor, region 1.1 GYO_2785 PF04542 Sigma-70 region 2 GYO_2785 PF04539 Sigma-70 region 3 GYO_2785 PF04545 Sigma-70, region 4 GYO_2786 PF01807 CHC2 zinc finger GYO_2786 PF08275 DNA primase catalytic core, N-terminal domain GYO_2786 PF10410 DnaB-helicase binding domain of primase GYO_2787 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 GYO_2788 PF03618 Kinase/pyrophosphorylase GYO_2789 PF00571 CBS domain GYO_2789 PF08279 HTH domain GYO_2790 PF02092 Glycyl-tRNA synthetase beta subunit GYO_2791 PF02091 Glycyl-tRNA synthetase alpha subunit GYO_2792 PF02565 Recombination protein O C terminal GYO_2792 PF11967 Recombination protein O N terminal GYO_2793 PF14006 YqzL-like protein GYO_2794 PF01926 50S ribosome-binding GTPase GYO_2794 PF07650 KH domain GYO_2795 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region GYO_2797 PF01219 Prokaryotic diacylglycerol kinase GYO_2798 PF02130 Uncharacterized protein family UPF0054 GYO_2799 PF07697 7TM-HD extracellular GYO_2799 PF07698 7TM receptor with intracellular HD hydrolase GYO_2799 PF01966 HD domain GYO_2801 PF02562 PhoH-like protein GYO_2804 PF07873 YabP family GYO_2806 PF12127 SigmaW regulon antibacterial GYO_2807 PF01972 Serine dehydrogenase proteinase GYO_2807 PF01957 NfeD-like C-terminal, partner-binding GYO_2808 PF09424 Yqey-like protein GYO_2809 PF01165 Ribosomal protein S21 GYO_2810 PF02690 Na+/Pi-cotransporter GYO_2811 PF00919 Uncharacterized protein family UPF0004 GYO_2811 PF04055 Radical SAM superfamily GYO_2811 PF01938 TRAM domain GYO_2812 PF04452 RNA methyltransferase GYO_2814 PF01556 DnaJ C terminal domain GYO_2814 PF00684 DnaJ central domain GYO_2814 PF00226 DnaJ domain GYO_2815 PF00012 Hsp70 protein GYO_2816 PF01025 GrpE GYO_2817 PF01628 HrcA protein C terminal domain GYO_2818 PF06969 HemN C-terminal domain GYO_2818 PF04055 Radical SAM superfamily GYO_2819 PF06421 GTP-binding protein LepA C-terminus GYO_2819 PF03144 Elongation factor Tu domain 2 GYO_2819 PF00009 Elongation factor Tu GTP binding domain GYO_2819 PF00679 Elongation factor G C-terminus GYO_2820 PF12438 Protein of unknown function (DUF3679) GYO_2821 PF07454 Stage II sporulation protein P (SpoIIP) GYO_2822 PF03418 Germination protease GYO_2823 PF01649 Ribosomal protein S20 GYO_2824 PF06144 DNA polymerase III, delta subunit GYO_2826 PF14141 YqzM-like protein GYO_2827 PF03772 Competence protein GYO_2827 PF13567 Domain of unknown function (DUF4131) GYO_2827 PF00753 Metallo-beta-lactamase superfamily GYO_2828 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region GYO_2829 PF10531 SLBB domain GYO_2830 PF03807 NADP oxidoreductase coenzyme F420-dependent GYO_2830 PF14748 Pyrroline-5-carboxylate reductase dimerisation GYO_2831 PF13649 Methyltransferase domain GYO_2833 PF01966 HD domain GYO_2834 PF01467 Cytidylyltransferase-like GYO_2835 PF01985 CRS1 / YhbY (CRM) domain GYO_2836 PF01488 Shikimate / quinate 5-dehydrogenase GYO_2836 PF08501 Shikimate dehydrogenase substrate binding domain GYO_2836 PF18317 Shikimate 5'-dehydrogenase C-terminal domain GYO_2837 PF01926 50S ribosome-binding GTPase GYO_2839 PF08970 Sporulation inhibitor A GYO_2840 PF00657 GDSL-like Lipase/Acylhydrolase GYO_2841 PF01471 Putative peptidoglycan binding domain GYO_2841 PF01510 N-acetylmuramoyl-L-alanine amidase GYO_2842 PF09335 SNARE associated Golgi protein GYO_2843 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase GYO_2843 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain GYO_2845 PF14040 Deoxyribonuclease NucA/NucB GYO_2846 PF04545 Sigma-70, region 4 GYO_2846 PF04542 Sigma-70 region 2 GYO_2848 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain GYO_2848 PF01411 tRNA synthetases class II (A) GYO_2848 PF02272 DHHA1 domain GYO_2850 PF01042 Endoribonuclease L-PSP GYO_2851 PF17763 Glutaminase/Asparaginase C-terminal domain GYO_2851 PF00710 Asparaginase, N-terminal GYO_2852 PF00585 C-terminal regulatory domain of Threonine dehydratase GYO_2852 PF00291 Pyridoxal-phosphate dependent enzyme GYO_2855 PF18801 response regulator aspartate phosphatase H, N terminal GYO_2855 PF13181 Tetratricopeptide repeat GYO_2857 PF14449 Pre-toxin TG GYO_2857 PF04740 LXG domain of WXG superfamily GYO_2857 PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues GYO_2858 PF14449 Pre-toxin TG GYO_2858 PF04740 LXG domain of WXG superfamily GYO_2858 PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues GYO_2866 PF01925 Sulfite exporter TauE/SafE GYO_2867 PF01206 Sulfurtransferase TusA GYO_2868 PF00753 Metallo-beta-lactamase superfamily GYO_2868 PF00581 Rhodanese-like domain GYO_2870 PF00581 Rhodanese-like domain GYO_2870 PF01206 Sulfurtransferase TusA GYO_2872 PF13686 DsrE/DsrF/DrsH-like family GYO_2875 PF00753 Metallo-beta-lactamase superfamily GYO_2877 PF00072 Response regulator receiver domain GYO_2877 PF00196 Bacterial regulatory proteins, luxR family GYO_2878 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GYO_2878 PF07730 Histidine kinase GYO_2879 PF01925 Sulfite exporter TauE/SafE GYO_2881 PF12706 Beta-lactamase superfamily domain GYO_2884 PF03123 CAT RNA binding domain GYO_2884 PF00874 PRD domain GYO_2885 PF00232 Glycosyl hydrolase family 1 GYO_2886 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 GYO_2886 PF00367 phosphotransferase system, EIIB GYO_2886 PF02378 Phosphotransferase system, EIIC GYO_2887 PF00403 Heavy-metal-associated domain GYO_2888 PF00403 Heavy-metal-associated domain GYO_2889 PF02583 Metal-sensitive transcriptional repressor GYO_2892 PF06114 IrrE N-terminal-like domain GYO_2896 PF01638 HxlR-like helix-turn-helix GYO_2898 PF00881 Nitroreductase family GYO_2900 PF01337 Barstar (barnase inhibitor) GYO_2903 PF06445 GyrI-like small molecule binding domain GYO_2903 PF13411 MerR HTH family regulatory protein GYO_2904 PF07690 Major Facilitator Superfamily GYO_2905 PF00583 Acetyltransferase (GNAT) family GYO_2906 PF01595 Cyclin M transmembrane N-terminal domain GYO_2906 PF03471 Transporter associated domain GYO_2906 PF00571 CBS domain GYO_2913 PF13411 MerR HTH family regulatory protein GYO_2913 PF06445 GyrI-like small molecule binding domain GYO_2915 PF04237 YjbR GYO_2918 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment GYO_2919 PF04542 Sigma-70 region 2 GYO_2919 PF08281 Sigma-70, region 4 GYO_2920 PF00248 Aldo/keto reductase family GYO_2921 PF01374 Glycosyl hydrolase family 46 GYO_2923 PF00561 alpha/beta hydrolase fold GYO_2927 PF07875 Coat F domain GYO_2928 PF00107 Zinc-binding dehydrogenase GYO_2928 PF13823 Alcohol dehydrogenase GroES-associated GYO_2928 PF08240 Alcohol dehydrogenase GroES-like domain GYO_2930 PF07875 Coat F domain GYO_2931 PF06719 AraC-type transcriptional regulator N-terminus GYO_2931 PF12833 Helix-turn-helix domain GYO_2933 PF13411 MerR HTH family regulatory protein GYO_2934 PF02627 Carboxymuconolactone decarboxylase family GYO_2935 PF00107 Zinc-binding dehydrogenase GYO_2935 PF08240 Alcohol dehydrogenase GroES-like domain GYO_2936 PF01965 DJ-1/PfpI family GYO_2937 PF08244 Glycosyl hydrolases family 32 C terminal GYO_2937 PF00251 Glycosyl hydrolases family 32 N-terminal domain GYO_2938 PF03613 PTS system mannose/fructose/sorbose family IID component GYO_2939 PF03609 PTS system sorbose-specific iic component GYO_2940 PF03830 PTS system sorbose subfamily IIB component GYO_2941 PF03610 PTS system fructose IIA component GYO_2942 PF00158 Sigma-54 interaction domain GYO_2942 PF03610 PTS system fructose IIA component GYO_2942 PF00874 PRD domain GYO_2946 PF00324 Amino acid permease GYO_2947 PF01810 LysE type translocator GYO_2948 PF11495 Archaeal transcriptional regulator TrmB GYO_2948 PF01978 Sugar-specific transcriptional regulator TrmB GYO_2949 PF04542 Sigma-70 region 2 GYO_2949 PF08281 Sigma-70, region 4 GYO_2950 PF11738 Protein of unknown function (DUF3298) GYO_2950 PF13739 Deacetylase PdaC GYO_2951 PF01757 Acyltransferase family GYO_2952 PF14145 YrhK-like protein GYO_2953 PF00667 FAD binding domain GYO_2953 PF00067 Cytochrome P450 GYO_2953 PF00175 Oxidoreductase NAD-binding domain GYO_2953 PF00258 Flavodoxin GYO_2954 PF16295 Tetracyclin repressor-like, C-terminal domain GYO_2954 PF00440 Bacterial regulatory proteins, tetR family GYO_2955 PF08241 Methyltransferase domain GYO_2958 PF09501 Probable sporulation protein (Bac_small_yrzI) GYO_2959 PF01226 Formate/nitrite transporter GYO_2961 PF10057 Uncharacterized conserved protein (DUF2294) GYO_2962 PF00384 Molybdopterin oxidoreductase GYO_2962 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region GYO_2962 PF01568 Molydopterin dinucleotide binding domain GYO_2962 PF04879 Molybdopterin oxidoreductase Fe4S4 domain GYO_2962 PF00037 4Fe-4S binding domain GYO_2963 PF07849 Protein of unknown function (DUF1641) GYO_2964 PF14143 YrhC-like protein GYO_2965 PF01053 Cys/Met metabolism PLP-dependent enzyme GYO_2966 PF00291 Pyridoxal-phosphate dependent enzyme GYO_2967 PF01048 Phosphorylase superfamily GYO_2968 PF13649 Methyltransferase domain GYO_2969 PF10750 Protein of unknown function (DUF2536) GYO_2970 PF07423 Domain of unknown function (DUF1510) GYO_2971 PF03717 Penicillin-binding Protein dimerisation domain GYO_2971 PF00905 Penicillin binding protein transpeptidase domain GYO_2972 PF01272 Transcription elongation factor, GreA/GreB, C-term GYO_2972 PF03449 Transcription elongation factor, N-terminal GYO_2973 PF00485 Phosphoribulokinase / Uridine kinase family GYO_2977 PF02618 YceG-like family GYO_2979 PF06949 Protein of unknown function (DUF1292) GYO_2980 PF03652 Holliday junction resolvase GYO_2981 PF06135 IreB regulatory phosphoprotein GYO_2982 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain GYO_2982 PF01411 tRNA synthetases class II (A) GYO_2982 PF02272 DHHA1 domain GYO_2983 PF01594 AI-2E family transporter GYO_2984 PF13056 Protein of unknown function (DUF3918) GYO_2986 PF05239 PRC-barrel domain GYO_2987 PF13538 UvrD-like helicase C-terminal domain GYO_2987 PF14490 Helix-hairpin-helix containing domain GYO_2987 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain GYO_2988 PF13181 Tetratricopeptide repeat GYO_2988 PF07719 Tetratricopeptide repeat GYO_2990 PF00266 Aminotransferase class-V GYO_2991 PF02082 Transcriptional regulator GYO_2992 PF12002 MgsA AAA+ ATPase C terminal GYO_2992 PF05496 Holliday junction DNA helicase RuvB P-loop domain GYO_2992 PF16193 AAA C-terminal domain GYO_2993 PF00899 ThiF family GYO_2995 PF01336 OB-fold nucleic acid binding domain GYO_2995 PF00152 tRNA synthetases class II (D, K and N) GYO_2995 PF02938 GAD domain GYO_2996 PF13393 Histidyl-tRNA synthetase GYO_2996 PF03129 Anticodon binding domain GYO_2997 PF17449 Uncharacterized YrzK-like GYO_2998 PF01520 N-acetylmuramoyl-L-alanine amidase GYO_2998 PF08239 Bacterial SH3 domain GYO_2999 PF02580 D-Tyr-tRNA(Tyr) deacylase GYO_3000 PF13291 ACT domain GYO_3000 PF04607 Region found in RelA / SpoT proteins GYO_3000 PF02824 TGS domain GYO_3001 PF00156 Phosphoribosyl transferase domain GYO_3002 PF02272 DHHA1 domain GYO_3002 PF17768 RecJ OB domain GYO_3002 PF01368 DHH family GYO_3002 PF10141 Single-strand DNA-specific exonuclease, C terminal domain GYO_3003 PF06305 Lipopolysaccharide assembly protein A domain GYO_3004 PF02080 TrkA-C domain GYO_3005 PF02355 Protein export membrane protein GYO_3005 PF07549 SecD/SecF GG Motif GYO_3006 PF13797 Post-transcriptional regulator GYO_3007 PF14667 Polysaccharide biosynthesis C-terminal domain GYO_3007 PF01943 Polysaccharide biosynthesis protein GYO_3008 PF04239 Protein of unknown function (DUF421) GYO_3009 PF12670 Protein of unknown function (DUF3792) GYO_3010 PF02699 Preprotein translocase subunit GYO_3011 PF01702 Queuine tRNA-ribosyltransferase GYO_3012 PF02547 Queuosine biosynthesis protein GYO_3013 PF11146 Protein of unknown function (DUF2905) GYO_3014 PF05496 Holliday junction DNA helicase RuvB P-loop domain GYO_3014 PF17864 RuvB AAA lid domain GYO_3014 PF05491 RuvB C-terminal winged helix domain GYO_3015 PF07499 RuvA, C-terminal domain GYO_3015 PF01330 RuvA N terminal domain GYO_3016 PF08977 Bypass of Forespore C, N terminal GYO_3016 PF08955 BofC C-terminal domain GYO_3017 PF07690 Major Facilitator Superfamily GYO_3018 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GYO_3018 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GYO_3021 PF01235 Sodium:alanine symporter family GYO_3022 PF01709 Transcriptional regulator GYO_3023 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) GYO_3024 PF01476 LysM domain GYO_3025 PF02445 Quinolinate synthetase A protein GYO_3026 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain GYO_3026 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain GYO_3027 PF02910 Fumarate reductase flavoprotein C-term GYO_3027 PF00890 FAD binding domain GYO_3028 PF00266 Aminotransferase class-V GYO_3029 PF08279 HTH domain GYO_3029 PF02829 3H domain GYO_3030 PF00800 Prephenate dehydratase GYO_3030 PF01842 ACT domain GYO_3031 PF01842 ACT domain GYO_3032 PF01926 50S ribosome-binding GTPase GYO_3032 PF01018 GTP1/OBG GYO_3032 PF09269 Domain of unknown function (DUF1967) GYO_3033 PF14682 Sporulation initiation phospho-transferase B, C-terminal GYO_3033 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain GYO_3035 PF01016 Ribosomal L27 protein GYO_3036 PF04327 Cysteine protease Prp GYO_3037 PF00829 Ribosomal prokaryotic L21 protein GYO_3038 PF02163 Peptidase family M50 GYO_3039 PF01551 Peptidase family M23 GYO_3041 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain GYO_3042 PF03775 Septum formation inhibitor MinC, C-terminal domain GYO_3043 PF04093 rod shape-determining protein MreD GYO_3044 PF04085 rod shape-determining protein MreC GYO_3046 PF00633 Helix-hairpin-helix motif GYO_3046 PF04002 RadC-like JAB domain GYO_3047 PF02545 Maf-like protein GYO_3048 PF05036 Sporulation related domain GYO_3049 PF01478 Type IV leader peptidase family GYO_3049 PF06750 Bacterial Peptidase A24 N-terminal domain GYO_3051 PF08245 Mur ligase middle domain GYO_3051 PF02875 Mur ligase family, glutamate ligase domain GYO_3052 PF10458 Valyl tRNA synthetase tRNA binding arm GYO_3052 PF00133 tRNA synthetases class I (I, L, M and V) GYO_3052 PF08264 Anticodon-binding domain of tRNA GYO_3055 PF01476 LysM domain GYO_3056 PF00202 Aminotransferase class-III GYO_3057 PF00490 Delta-aminolevulinic acid dehydratase GYO_3058 PF02602 Uroporphyrinogen-III synthase HemD GYO_3059 PF03900 Porphobilinogen deaminase, C-terminal domain GYO_3059 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain GYO_3060 PF01578 Cytochrome C assembly protein GYO_3061 PF01488 Shikimate / quinate 5-dehydrogenase GYO_3061 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain GYO_3061 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain GYO_3063 PF01926 50S ribosome-binding GTPase GYO_3064 PF05362 Lon protease (S16) C-terminal proteolytic domain GYO_3064 PF00004 ATPase family associated with various cellular activities (AAA) GYO_3064 PF02190 ATP-dependent protease La (LON) substrate-binding domain GYO_3065 PF00004 ATPase family associated with various cellular activities (AAA) GYO_3065 PF05362 Lon protease (S16) C-terminal proteolytic domain GYO_3066 PF06689 ClpX C4-type zinc finger GYO_3066 PF10431 C-terminal, D2-small domain, of ClpB protein GYO_3066 PF07724 AAA domain (Cdc48 subfamily) GYO_3067 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase GYO_3067 PF05697 Bacterial trigger factor protein (TF) GYO_3067 PF05698 Bacterial trigger factor protein (TF) C-terminus GYO_3070 PF00694 Aconitase C-terminal domain GYO_3071 PF00330 Aconitase family (aconitate hydratase) GYO_3072 PF00180 Isocitrate/isopropylmalate dehydrogenase GYO_3073 PF00682 HMGL-like GYO_3073 PF08502 LeuA allosteric (dimerisation) domain GYO_3074 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain GYO_3074 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain GYO_3075 PF01842 ACT domain GYO_3075 PF10369 Small subunit of acetolactate synthase GYO_3076 PF00205 Thiamine pyrophosphate enzyme, central domain GYO_3076 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GYO_3076 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GYO_3078 PF00583 Acetyltransferase (GNAT) family GYO_3079 PF09557 Domain of unknown function (DUF2382) GYO_3079 PF11181 Heat induced stress protein YflT GYO_3081 PF12850 Calcineurin-like phosphoesterase superfamily domain GYO_3082 PF01725 Ham1 family GYO_3083 PF01138 3' exoribonuclease family, domain 1 GYO_3083 PF03725 3' exoribonuclease family, domain 2 GYO_3084 PF10646 Sporulation and spore germination GYO_3085 PF01177 Asp/Glu/Hydantoin racemase GYO_3086 PF01047 MarR family GYO_3087 PF00196 Bacterial regulatory proteins, luxR family GYO_3088 PF03061 Thioesterase superfamily GYO_3089 PF13183 4Fe-4S dicluster domain GYO_3089 PF13085 2Fe-2S iron-sulfur cluster binding domain GYO_3090 PF00890 FAD binding domain GYO_3090 PF02910 Fumarate reductase flavoprotein C-term GYO_3091 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit GYO_3092 PF10702 Protein of unknown function (DUF2507) GYO_3093 PF01842 ACT domain GYO_3093 PF00696 Amino acid kinase family GYO_3093 PF13840 ACT domain GYO_3096 PF08459 UvrC Helix-hairpin-helix N-terminal GYO_3096 PF02151 UvrB/uvrC motif GYO_3096 PF01541 GIY-YIG catalytic domain GYO_3097 PF00085 Thioredoxin GYO_3098 PF06964 Alpha-L-arabinofuranosidase C-terminal domain GYO_3099 PF00766 Electron transfer flavoprotein FAD-binding domain GYO_3099 PF01012 Electron transfer flavoprotein domain GYO_3100 PF01012 Electron transfer flavoprotein domain GYO_3101 PF00378 Enoyl-CoA hydratase/isomerase GYO_3102 PF00440 Bacterial regulatory proteins, tetR family GYO_3102 PF08359 YsiA-like protein, C-terminal region GYO_3103 PF13193 AMP-binding enzyme C-terminal domain GYO_3103 PF00501 AMP-binding enzyme GYO_3104 PF03994 Domain of Unknown Function (DUF350) GYO_3105 PF00488 MutS domain V GYO_3105 PF01713 Smr domain GYO_3106 PF14716 Helix-hairpin-helix domain GYO_3106 PF02811 PHP domain GYO_3106 PF14791 DNA polymerase beta thumb GYO_3107 PF02674 Colicin V production protein GYO_3108 PF05164 Cell division protein ZapA GYO_3109 PF01351 Ribonuclease HII GYO_3109 PF11858 Domain of unknown function (DUF3378) GYO_3110 PF01588 Putative tRNA binding domain GYO_3110 PF03147 Ferredoxin-fold anticodon binding domain GYO_3110 PF03484 tRNA synthetase B5 domain GYO_3110 PF03483 B3/4 domain GYO_3110 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain GYO_3111 PF01409 tRNA synthetases class II core domain (F) GYO_3111 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain GYO_3112 PF08032 RNA 2'-O ribose methyltransferase substrate binding GYO_3112 PF00588 SpoU rRNA Methylase family GYO_3113 PF14098 Small, acid-soluble spore protein I GYO_3114 PF13556 PucR C-terminal helix-turn-helix domain GYO_3114 PF17853 GGDEF-like domain GYO_3114 PF05651 Putative sugar diacid recognition GYO_3115 PF02913 FAD linked oxidases, C-terminal domain GYO_3115 PF01565 FAD binding domain GYO_3116 PF02754 Cysteine-rich domain GYO_3116 PF13183 4Fe-4S dicluster domain GYO_3117 PF12681 Glyoxalase-like domain GYO_3118 PF02554 Carbon starvation protein CstA GYO_3118 PF13722 5TM C-terminal transporter carbon starvation CstA GYO_3121 PF03551 Transcriptional regulator PadR-like family GYO_3122 PF06964 Alpha-L-arabinofuranosidase C-terminal domain GYO_3123 PF00528 Binding-protein-dependent transport system inner membrane component GYO_3124 PF00528 Binding-protein-dependent transport system inner membrane component GYO_3125 PF01547 Bacterial extracellular solute-binding protein GYO_3126 PF13685 Iron-containing alcohol dehydrogenase GYO_3127 PF13344 Haloacid dehalogenase-like hydrolase GYO_3128 PF00596 Class II Aldolase and Adducin N-terminal domain GYO_3129 PF00370 FGGY family of carbohydrate kinases, N-terminal domain GYO_3129 PF02782 FGGY family of carbohydrate kinases, C-terminal domain GYO_3130 PF11762 L-arabinose isomerase C-terminal domain GYO_3130 PF02610 L-arabinose isomerase GYO_3132 PF04616 Glycosyl hydrolases family 43 GYO_3133 PF05343 M42 glutamyl aminopeptidase GYO_3135 PF06961 Protein of unknown function (DUF1294) GYO_3136 PF00453 Ribosomal protein L20 GYO_3137 PF00707 Translation initiation factor IF-3, C-terminal domain GYO_3137 PF05198 Translation initiation factor IF-3, N-terminal domain GYO_3140 PF04172 LrgB-like family GYO_3141 PF03788 LrgA family GYO_3142 PF04397 LytTr DNA-binding domain GYO_3142 PF00072 Response regulator receiver domain GYO_3143 PF07694 5TMR of 5TMR-LYT GYO_3143 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GYO_3143 PF06580 Histidine kinase GYO_3145 PF02824 TGS domain GYO_3145 PF03129 Anticodon binding domain GYO_3145 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) GYO_3145 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain GYO_3147 PF09335 SNARE associated Golgi protein GYO_3148 PF01695 IstB-like ATP binding protein GYO_3148 PF07319 Primosomal protein DnaI N-terminus GYO_3149 PF07261 Replication initiation and membrane attachment GYO_3150 PF03477 ATP cone domain GYO_3151 PF02675 S-adenosylmethionine decarboxylase GYO_3152 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GYO_3152 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain GYO_3153 PF01638 HxlR-like helix-turn-helix GYO_3154 PF07690 Major Facilitator Superfamily GYO_3155 PF00248 Aldo/keto reductase family GYO_3156 PF01121 Dephospho-CoA kinase GYO_3157 PF02659 Putative manganese efflux pump GYO_3158 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain GYO_3158 PF06827 Zinc finger found in FPG and IleRS GYO_3158 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain GYO_3159 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain GYO_3159 PF00476 DNA polymerase family A GYO_3159 PF01367 5'-3' exonuclease, C-terminal SAM fold GYO_3161 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GYO_3161 PF00989 PAS fold GYO_3161 PF00512 His Kinase A (phospho-acceptor) domain GYO_3161 PF16736 Single Cache-like GYO_3162 PF00486 Transcriptional regulatory protein, C terminal GYO_3162 PF00072 Response regulator receiver domain GYO_3164 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain GYO_3164 PF00056 lactate/malate dehydrogenase, NAD binding domain GYO_3165 PF00180 Isocitrate/isopropylmalate dehydrogenase GYO_3166 PF00285 Citrate synthase, C-terminal domain GYO_3167 PF04284 Protein of unknown function (DUF441) GYO_3168 PF01594 AI-2E family transporter GYO_3170 PF04186 FxsA cytoplasmic membrane protein GYO_3171 PF00224 Pyruvate kinase, barrel domain GYO_3171 PF02887 Pyruvate kinase, alpha/beta domain GYO_3171 PF00391 PEP-utilising enzyme, mobile domain GYO_3172 PF00365 Phosphofructokinase GYO_3173 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit GYO_3174 PF17848 Acetyl-coA carboxylase zinc finger domain GYO_3174 PF01039 Carboxyl transferase domain GYO_3175 PF00390 Malic enzyme, N-terminal domain GYO_3175 PF03949 Malic enzyme, NAD binding domain GYO_3176 PF01336 OB-fold nucleic acid binding domain GYO_3176 PF14579 Helix-hairpin-helix motif GYO_3176 PF02811 PHP domain GYO_3176 PF07733 Bacterial DNA polymerase III alpha NTPase domain GYO_3176 PF17657 Bacterial DNA polymerase III alpha subunit finger domain GYO_3177 PF14034 Sporulation protein YtrH GYO_3180 PF01368 DHH family GYO_3180 PF02272 DHHA1 domain GYO_3182 PF14007 YtpI-like protein GYO_3183 PF00392 Bacterial regulatory proteins, gntR family GYO_3183 PF03061 Thioesterase superfamily GYO_3183 PF07085 DRTGG domain GYO_3183 PF00571 CBS domain GYO_3188 PF00206 Lyase GYO_3188 PF14698 Argininosuccinate lyase C-terminal GYO_3189 PF00764 Arginosuccinate synthase GYO_3190 PF00994 Probable molybdopterin binding domain GYO_3191 PF00871 Acetokinase family GYO_3193 PF02384 N-6 DNA Methylase GYO_3194 PF08534 Redoxin GYO_3195 PF09579 Sporulation protein YtfJ (Spore_YtfJ) GYO_3196 PF11167 Protein of unknown function (DUF2953) GYO_3197 PF06271 RDD family GYO_3198 PF01343 Peptidase family S49 GYO_3200 PF01513 ATP-NAD kinase GYO_3201 PF07969 Amidohydrolase family GYO_3202 PF00501 AMP-binding enzyme GYO_3202 PF13193 AMP-binding enzyme C-terminal domain GYO_3203 PF00269 Small, acid-soluble spore proteins, alpha/beta type GYO_3204 PF02568 Thiamine biosynthesis protein (ThiI) GYO_3204 PF02926 THUMP domain GYO_3205 PF00266 Aminotransferase class-V GYO_3206 PF05525 Branched-chain amino acid transport protein GYO_3207 PF06160 Septation ring formation regulator, EzrA GYO_3208 PF02811 PHP domain GYO_3209 PF00440 Bacterial regulatory proteins, tetR family GYO_3210 PF13185 GAF domain GYO_3211 PF00990 Diguanylate cyclase, GGDEF domain GYO_3213 PF01479 S4 domain GYO_3213 PF00163 Ribosomal protein S4/S9 N-terminal domain GYO_3215 PF00579 tRNA synthetases class I (W and Y) GYO_3215 PF01479 S4 domain GYO_3216 PF00501 AMP-binding enzyme GYO_3216 PF13193 AMP-binding enzyme C-terminal domain GYO_3217 PF00583 Acetyltransferase (GNAT) family GYO_3218 PF00571 CBS domain GYO_3219 PF00850 Histone deacetylase domain GYO_3220 PF13677 Membrane MotB of proton-channel complex MotA/MotB GYO_3220 PF00691 OmpA family GYO_3221 PF01618 MotA/TolQ/ExbB proton channel family GYO_3222 PF00356 Bacterial regulatory proteins, lacI family GYO_3223 PF01817 Chorismate mutase type II GYO_3223 PF00793 DAHP synthetase I family GYO_3224 PF11009 Protein of unknown function (DUF2847) GYO_3225 PF12732 YtxH-like protein GYO_3226 PF06103 Bacterial protein of unknown function (DUF948) GYO_3227 PF02875 Mur ligase family, glutamate ligase domain GYO_3227 PF08245 Mur ligase middle domain GYO_3227 PF01225 Mur ligase family, catalytic domain GYO_3228 PF01580 FtsK/SpoIIIE family GYO_3228 PF09397 Ftsk gamma domain GYO_3228 PF17854 FtsK alpha domain GYO_3229 PF14794 Domain of unknown function (DUF4479) GYO_3229 PF01588 Putative tRNA binding domain GYO_3230 PF07285 Protein of unknown function (DUF1444) GYO_3231 PF00085 Thioredoxin GYO_3233 PF11071 Nucleoside 2-deoxyribosyltransferase YtoQ GYO_3234 PF05343 M42 glutamyl aminopeptidase GYO_3235 PF03413 Peptidase propeptide and YPEB domain GYO_3236 PF03949 Malic enzyme, NAD binding domain GYO_3236 PF00390 Malic enzyme, N-terminal domain GYO_3237 PF00753 Metallo-beta-lactamase superfamily GYO_3238 PF02390 Putative methyltransferase GYO_3239 PF14165 YtzH-like protein GYO_3240 PF01636 Phosphotransferase enzyme family GYO_3241 PF00128 Alpha amylase, catalytic domain GYO_3241 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) GYO_3241 PF17999 Pullulanase N1-terminal domain GYO_3242 PF00781 Diacylglycerol kinase catalytic domain GYO_3245 PF00291 Pyridoxal-phosphate dependent enzyme GYO_3246 PF01546 Peptidase family M20/M25/M40 GYO_3248 PF05975 Bacterial ABC transporter protein EcsB GYO_3249 PF00005 ABC transporter GYO_3250 PF08220 DeoR-like helix-turn-helix domain GYO_3251 PF00849 RNA pseudouridylate synthase GYO_3251 PF01479 S4 domain GYO_3252 PF14667 Polysaccharide biosynthesis C-terminal domain GYO_3252 PF01943 Polysaccharide biosynthesis protein GYO_3255 PF02028 BCCT, betaine/carnitine/choline family transporter GYO_3256 PF10957 Sporulation protein Cse60 GYO_3257 PF04854 Protein of unknown function, DUF624 GYO_3258 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GYO_3258 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GYO_3260 PF07470 Glycosyl Hydrolase Family 88 GYO_3261 PF00528 Binding-protein-dependent transport system inner membrane component GYO_3262 PF12833 Helix-turn-helix domain GYO_3262 PF17853 GGDEF-like domain GYO_3263 PF13416 Bacterial extracellular solute-binding protein GYO_3264 PF00528 Binding-protein-dependent transport system inner membrane component GYO_3266 PF01370 NAD dependent epimerase/dehydratase family GYO_3267 PF00067 Cytochrome P450 GYO_3268 PF04055 Radical SAM superfamily GYO_3268 PF06968 Biotin and Thiamin Synthesis associated domain GYO_3270 PF00155 Aminotransferase class I and II GYO_3271 PF00202 Aminotransferase class-III GYO_3272 PF03744 6-carboxyhexanoate--CoA ligase GYO_3274 PF01738 Dienelactone hydrolase family GYO_3279 PF02056 Family 4 glycosyl hydrolase GYO_3279 PF11975 Family 4 glycosyl hydrolase C-terminal domain GYO_3281 PF13333 Integrase core domain GYO_3281 PF00665 Integrase core domain GYO_3281 PF13276 HTH-like domain GYO_3282 PF00581 Rhodanese-like domain GYO_3283 PF08264 Anticodon-binding domain of tRNA GYO_3283 PF00133 tRNA synthetases class I (I, L, M and V) GYO_3283 PF13603 Leucyl-tRNA synthetase, Domain 2 GYO_3283 PF09334 tRNA synthetases class I (M) GYO_3284 PF14074 Protein of unknown function (DUF4257) GYO_3285 PF01740 STAS domain GYO_3285 PF13426 PAS domain GYO_3286 PF07690 Major Facilitator Superfamily GYO_3287 PF04791 LMBR1-like membrane protein GYO_3288 PF02687 FtsX-like permease family GYO_3289 PF00005 ABC transporter GYO_3290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GYO_3291 PF00486 Transcriptional regulatory protein, C terminal GYO_3291 PF00072 Response regulator receiver domain GYO_3292 PF12704 MacB-like periplasmic core domain GYO_3292 PF02687 FtsX-like permease family GYO_3293 PF00005 ABC transporter GYO_3296 PF00005 ABC transporter GYO_3297 PF00392 Bacterial regulatory proteins, gntR family GYO_3299 PF10732 Protein of unknown function (DUF2524) GYO_3300 PF16199 Radical_SAM C-terminal domain GYO_3300 PF04055 Radical SAM superfamily GYO_3301 PF06962 Putative rRNA methylase GYO_3302 PF10776 Protein of unknown function (DUF2600) GYO_3303 PF12146 Serine aminopeptidase, S33 GYO_3304 PF00132 Bacterial transferase hexapeptide (six repeats) GYO_3305 PF00324 Amino acid permease GYO_3306 PF13537 Glutamine amidotransferase domain GYO_3306 PF00733 Asparagine synthase GYO_3307 PF02772 S-adenosylmethionine synthetase, central domain GYO_3307 PF00438 S-adenosylmethionine synthetase, N-terminal domain GYO_3307 PF02773 S-adenosylmethionine synthetase, C-terminal domain GYO_3308 PF01293 Phosphoenolpyruvate carboxykinase GYO_3309 PF10763 Protein of unknown function (DUF2584) GYO_3310 PF00326 Prolyl oligopeptidase family GYO_3312 PF00005 ABC transporter GYO_3313 PF00528 Binding-protein-dependent transport system inner membrane component GYO_3314 PF00293 NUDIX domain GYO_3315 PF05105 Bacteriophage holin family GYO_3317 PF00210 Ferritin-like domain GYO_3319 PF13115 YtkA-like GYO_3320 PF02664 S-Ribosylhomocysteinase (LuxS) GYO_3321 PF01809 Putative membrane protein insertion efficiency factor GYO_3322 PF00484 Carbonic anhydrase GYO_3323 PF01197 Ribosomal protein L31 GYO_3325 PF01654 Cytochrome bd terminal oxidase subunit I GYO_3326 PF02322 Cytochrome bd terminal oxidase subunit II GYO_3327 PF07561 Domain of Unknown Function (DUF1540) GYO_3328 PF00950 ABC 3 transport family GYO_3329 PF00950 ABC 3 transport family GYO_3330 PF00005 ABC transporter GYO_3331 PF01297 Zinc-uptake complex component A periplasmic GYO_3332 PF13378 Enolase C-terminal domain-like GYO_3332 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain GYO_3333 PF13193 AMP-binding enzyme C-terminal domain GYO_3333 PF00501 AMP-binding enzyme GYO_3334 PF00378 Enoyl-CoA hydratase/isomerase GYO_3335 PF00561 alpha/beta hydrolase fold GYO_3336 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GYO_3336 PF16582 Middle domain of thiamine pyrophosphate GYO_3336 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GYO_3337 PF00425 chorismate binding enzyme GYO_3339 PF01258 Prokaryotic dksA/traR C4-type zinc finger GYO_3340 PF00483 Nucleotidyl transferase GYO_3341 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain GYO_3341 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain GYO_3341 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GYO_3342 PF01370 NAD dependent epimerase/dehydratase family GYO_3343 PF00534 Glycosyl transferases group 1 GYO_3343 PF13439 Glycosyltransferase Family 4 GYO_3346 PF00534 Glycosyl transferases group 1 GYO_3346 PF13439 Glycosyltransferase Family 4 GYO_3347 PF01636 Phosphotransferase enzyme family GYO_3348 PF03073 TspO/MBR family GYO_3349 PF00343 Carbohydrate phosphorylase GYO_3350 PF00534 Glycosyl transferases group 1 GYO_3350 PF08323 Starch synthase catalytic domain GYO_3351 PF00483 Nucleotidyl transferase GYO_3352 PF00483 Nucleotidyl transferase GYO_3353 PF02806 Alpha amylase, C-terminal all-beta domain GYO_3353 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) GYO_3353 PF00128 Alpha amylase, catalytic domain GYO_3377 PF09515 Thiamine transporter protein (Thia_YuaJ) GYO_3378 PF00583 Acetyltransferase (GNAT) family GYO_3379 PF01145 SPFH domain / Band 7 family GYO_3379 PF15975 Flotillin GYO_3381 PF12867 DinB superfamily GYO_3383 PF00465 Iron-containing alcohol dehydrogenase GYO_3386 PF17735 Biofilm surface layer A GYO_3387 PF02254 TrkA-N domain GYO_3387 PF02080 TrkA-C domain GYO_3388 PF02386 Cation transport protein GYO_3389 PF05360 yiaA/B two helix domain GYO_3390 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase GYO_3390 PF13457 GW (Gly-Tryp) dipeptide domain GYO_3391 PF07690 Major Facilitator Superfamily GYO_3398 PF02673 Bacitracin resistance protein BacA GYO_3399 PF01594 AI-2E family transporter GYO_3400 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GYO_3400 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GYO_3401 PF06134 L-rhamnose isomerase (RhaA) GYO_3402 PF05336 L-rhamnose mutarotase GYO_3403 PF02782 FGGY family of carbohydrate kinases, C-terminal domain GYO_3403 PF00370 FGGY family of carbohydrate kinases, N-terminal domain GYO_3404 PF08220 DeoR-like helix-turn-helix domain GYO_3404 PF00455 DeoR C terminal sensor domain GYO_3405 PF00596 Class II Aldolase and Adducin N-terminal domain GYO_3406 PF00672 HAMP domain GYO_3406 PF02743 Cache domain GYO_3406 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GYO_3407 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GYO_3407 PF00672 HAMP domain GYO_3407 PF02743 Cache domain GYO_3408 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GYO_3408 PF02743 Cache domain GYO_3408 PF00672 HAMP domain GYO_3409 PF00672 HAMP domain GYO_3409 PF02743 Cache domain GYO_3409 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GYO_3413 PF03060 Nitronate monooxygenase GYO_3414 PF01894 Uncharacterised protein family UPF0047 GYO_3415 PF16657 Maltogenic Amylase, C-terminal domain GYO_3415 PF00128 Alpha amylase, catalytic domain GYO_3416 PF01595 Cyclin M transmembrane N-terminal domain GYO_3416 PF00571 CBS domain GYO_3416 PF03471 Transporter associated domain GYO_3417 PF04298 Putative neutral zinc metallopeptidase GYO_3419 PF11458 Membrane-integrating protein Mistic GYO_3420 PF07885 Ion channel GYO_3420 PF02254 TrkA-N domain GYO_3421 PF08868 YugN-like family GYO_3423 PF00342 Phosphoglucose isomerase GYO_3424 PF00465 Iron-containing alcohol dehydrogenase GYO_3425 PF00465 Iron-containing alcohol dehydrogenase GYO_3426 PF04070 Domain of unknown function (DUF378) GYO_3427 PF00575 S1 RNA binding domain GYO_3428 PF00155 Aminotransferase class I and II GYO_3429 PF01037 Lrp/AsnC ligand binding domain GYO_3430 PF08386 TAP-like protein GYO_3430 PF00561 alpha/beta hydrolase fold GYO_3431 PF08958 Domain of unknown function (DUF1871) GYO_3432 PF00155 Aminotransferase class I and II GYO_3433 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GYO_3433 PF00512 His Kinase A (phospho-acceptor) domain GYO_3434 PF08810 Kinase associated protein B GYO_3435 PF00929 Exonuclease GYO_3437 PF07690 Major Facilitator Superfamily GYO_3438 PF00905 Penicillin binding protein transpeptidase domain GYO_3438 PF00912 Transglycosylase GYO_3439 PF04134 Protein of unknown function, DUF393 GYO_3440 PF17328 Family of unknown function (DUF5366) GYO_3441 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GYO_3441 PF00989 PAS fold GYO_3441 PF17203 Single cache domain 3 GYO_3441 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain GYO_3442 PF00072 Response regulator receiver domain GYO_3447 PF03390 2-hydroxycarboxylate transporter family GYO_3450 PF00361 Proton-conducting membrane transporter GYO_3450 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus GYO_3450 PF13244 Domain of unknown function (DUF4040) GYO_3451 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter GYO_3452 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L GYO_3453 PF00361 Proton-conducting membrane transporter GYO_3454 PF01899 Na+/H+ ion antiporter subunit GYO_3455 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) GYO_3456 PF03334 Na+/H+ antiporter subunit GYO_3457 PF03061 Thioesterase superfamily GYO_3458 PF00196 Bacterial regulatory proteins, luxR family GYO_3458 PF00072 Response regulator receiver domain GYO_3459 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GYO_3459 PF07730 Histidine kinase GYO_3461 PF00348 Polyprenyl synthetase GYO_3462 PF08181 DegQ (SacQ) family GYO_3465 PF00563 EAL domain GYO_3465 PF08668 HDOD domain GYO_3466 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family GYO_3466 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain GYO_3466 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain GYO_3467 PF00857 Isochorismatase family GYO_3468 PF07997 Protein of unknown function (DUF1694) GYO_3469 PF14166 YueH-like protein GYO_3470 PF10676 Spore germination protein gerPA/gerPF GYO_3471 PF01594 AI-2E family transporter GYO_3472 PF10049 Protein of unknown function (DUF2283) GYO_3473 PF10842 Protein of unknown function (DUF2642) GYO_3474 PF01966 HD domain GYO_3475 PF00106 short chain dehydrogenase GYO_3476 PF17355 Family of unknown function (DUF5383) GYO_3478 PF01580 FtsK/SpoIIIE family GYO_3478 PF12538 DNA transporter GYO_3479 PF10140 WXG100 protein secretion system (Wss), protein YukC GYO_3480 PF08817 WXG100 protein secretion system (Wss), protein YukD GYO_3481 PF06013 Proteins of 100 residues with WXG GYO_3482 PF13556 PucR C-terminal helix-turn-helix domain GYO_3482 PF17853 GGDEF-like domain GYO_3482 PF06018 CodY GAF-like domain GYO_3483 PF01262 Alanine dehydrogenase/PNT, C-terminal domain GYO_3483 PF05222 Alanine dehydrogenase/PNT, N-terminal domain GYO_3485 PF10042 Uncharacterized conserved protein (DUF2278) GYO_3486 PF03621 MbtH-like protein GYO_3487 PF00501 AMP-binding enzyme GYO_3487 PF00668 Condensation domain GYO_3487 PF00975 Thioesterase domain GYO_3487 PF13193 AMP-binding enzyme C-terminal domain GYO_3487 PF00550 Phosphopantetheine attachment site GYO_3488 PF00550 Phosphopantetheine attachment site GYO_3488 PF00857 Isochorismatase family GYO_3489 PF13193 AMP-binding enzyme C-terminal domain GYO_3489 PF00501 AMP-binding enzyme GYO_3490 PF00425 chorismate binding enzyme GYO_3491 PF00106 short chain dehydrogenase GYO_3493 PF00756 Putative esterase GYO_3494 PF00174 Oxidoreductase molybdopterin binding domain GYO_3495 PF02632 BioY family GYO_3496 PF13726 Na+-H+ antiporter family GYO_3496 PF03553 Na+/H+ antiporter family GYO_3497 PF00883 Cytosol aminopeptidase family, catalytic domain GYO_3497 PF02789 Cytosol aminopeptidase family, N-terminal domain GYO_3498 PF02681 Divergent PAP2 family GYO_3499 PF06725 3D domain GYO_3500 PF14068 Putative membrane protein GYO_3501 PF17302 Family of unknown function (DUF5351) GYO_3502 PF07992 Pyridine nucleotide-disulphide oxidoreductase GYO_3503 PF07992 Pyridine nucleotide-disulphide oxidoreductase GYO_3505 PF00478 IMP dehydrogenase / GMP reductase domain GYO_3506 PF04299 Putative FMN-binding domain GYO_3507 PF00583 Acetyltransferase (GNAT) family GYO_3509 PF01521 Iron-sulphur cluster biosynthesis GYO_3510 PF01678 Diaminopimelate epimerase GYO_3511 PF07662 Na+ dependent nucleoside transporter C-terminus GYO_3511 PF01773 Na+ dependent nucleoside transporter N-terminus GYO_3512 PF07293 Protein of unknown function (DUF1450) GYO_3513 PF07992 Pyridine nucleotide-disulphide oxidoreductase GYO_3514 PF07315 Protein of unknown function (DUF1462) GYO_3515 PF01106 NifU-like domain GYO_3516 PF00326 Prolyl oligopeptidase family GYO_3516 PF07676 WD40-like Beta Propeller Repeat GYO_3517 PF00288 GHMP kinases N terminal domain GYO_3517 PF08544 GHMP kinases C terminal GYO_3518 PF00291 Pyridoxal-phosphate dependent enzyme GYO_3519 PF00742 Homoserine dehydrogenase GYO_3519 PF03447 Homoserine dehydrogenase, NAD binding domain GYO_3519 PF01842 ACT domain GYO_3521 PF04608 Phosphatidylglycerophosphatase A GYO_3522 PF13344 Haloacid dehalogenase-like hydrolase GYO_3523 PF01934 Protein of unknown function DUF86 GYO_3524 PF06265 Protein of unknown function (DUF1027) GYO_3525 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) GYO_3526 PF04055 Radical SAM superfamily GYO_3526 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family GYO_3527 PF01551 Peptidase family M23 GYO_3528 PF09560 Sporulation protein YunB (Spo_YunB) GYO_3529 PF08827 Domain of unknown function (DUF1805) GYO_3530 PF02872 5'-nucleotidase, C-terminal domain GYO_3531 PF01925 Sulfite exporter TauE/SafE GYO_3532 PF01904 Protein of unknown function DUF72 GYO_3534 PF01979 Amidohydrolase family GYO_3535 PF17853 GGDEF-like domain GYO_3535 PF13556 PucR C-terminal helix-turn-helix domain GYO_3535 PF07905 Purine catabolism regulatory protein-like family GYO_3536 PF00860 Permease family GYO_3537 PF00860 Permease family GYO_3538 PF01014 Uricase GYO_3538 PF09349 OHCU decarboxylase GYO_3539 PF00576 HIUase/Transthyretin family GYO_3540 PF13176 Tetratricopeptide repeat GYO_3540 PF18801 response regulator aspartate phosphatase H, N terminal GYO_3543 PF00578 AhpC/TSA family GYO_3544 PF02683 Cytochrome C biogenesis protein transmembrane region GYO_3545 PF00111 2Fe-2S iron-sulfur cluster binding domain GYO_3545 PF01799 [2Fe-2S] binding domain GYO_3546 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase GYO_3546 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain GYO_3547 PF00941 FAD binding domain in molybdopterin dehydrogenase GYO_3548 PF12804 MobA-like NTP transferase domain GYO_3549 PF13478 XdhC Rossmann domain GYO_3549 PF02625 XdhC and CoxI family GYO_3550 PF00266 Aminotransferase class-V GYO_3551 PF01546 Peptidase family M20/M25/M40 GYO_3552 PF00591 Glycosyl transferase family, a/b domain GYO_3552 PF02885 Glycosyl transferase family, helical bundle domain GYO_3554 PF04231 Endonuclease I GYO_3555 PF17912 MalK OB fold domain GYO_3555 PF03459 TOBE domain GYO_3555 PF00005 ABC transporter GYO_3556 PF07702 UTRA domain GYO_3556 PF00392 Bacterial regulatory proteins, gntR family GYO_3557 PF00294 pfkB family carbohydrate kinase GYO_3558 PF00528 Binding-protein-dependent transport system inner membrane component GYO_3559 PF00528 Binding-protein-dependent transport system inner membrane component GYO_3560 PF01547 Bacterial extracellular solute-binding protein GYO_3561 PF01380 SIS domain GYO_3562 PF01541 GIY-YIG catalytic domain GYO_3563 PF01266 FAD dependent oxidoreductase GYO_3566 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GYO_3567 PF01458 Uncharacterized protein family (UPF0051) GYO_3568 PF01592 NifU-like N terminal domain GYO_3569 PF00266 Aminotransferase class-V GYO_3570 PF01458 Uncharacterized protein family (UPF0051) GYO_3571 PF00005 ABC transporter GYO_3573 PF02627 Carboxymuconolactone decarboxylase family GYO_3574 PF03180 NLPA lipoprotein GYO_3575 PF00528 Binding-protein-dependent transport system inner membrane component GYO_3576 PF00005 ABC transporter GYO_3576 PF09383 NIL domain GYO_3578 PF02036 SCP-2 sterol transfer family GYO_3579 PF00085 Thioredoxin GYO_3580 PF01751 Toprim domain GYO_3581 PF10830 Protein of unknown function (DUF2553) GYO_3582 PF01597 Glycine cleavage H-protein GYO_3583 PF03960 ArsC family GYO_3584 PF02770 Acyl-CoA dehydrogenase, middle domain GYO_3584 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GYO_3584 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GYO_3585 PF00108 Thiolase, N-terminal domain GYO_3585 PF02803 Thiolase, C-terminal domain GYO_3586 PF00378 Enoyl-CoA hydratase/isomerase GYO_3586 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain GYO_3586 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain GYO_3587 PF14115 YuzL-like protein GYO_3588 PF01619 Proline dehydrogenase GYO_3590 PF07875 Coat F domain GYO_3591 PF01047 MarR family GYO_3592 PF07690 Major Facilitator Superfamily GYO_3593 PF14552 Tautomerase enzyme GYO_3595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GYO_3595 PF03466 LysR substrate binding domain GYO_3596 PF10835 Protein of unknown function (DUF2573) GYO_3597 PF00005 ABC transporter GYO_3599 PF14039 YusW-like protein GYO_3601 PF00106 short chain dehydrogenase GYO_3602 PF00210 Ferritin-like domain GYO_3603 PF13180 PDZ domain GYO_3605 PF00072 Response regulator receiver domain GYO_3605 PF00486 Transcriptional regulatory protein, C terminal GYO_3606 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GYO_3606 PF00512 His Kinase A (phospho-acceptor) domain GYO_3606 PF00672 HAMP domain GYO_3608 PF00440 Bacterial regulatory proteins, tetR family GYO_3609 PF00206 Lyase GYO_3609 PF10415 Fumarase C C-terminus GYO_3610 PF13113 Protein of unknown function (DUF3970) GYO_3611 PF03323 Bacillus/Clostridium GerA spore germination protein GYO_3612 PF03845 Spore germination protein GYO_3613 PF05504 Spore germination B3/ GerAC like, C-terminal GYO_3614 PF00196 Bacterial regulatory proteins, luxR family GYO_3614 PF00072 Response regulator receiver domain GYO_3615 PF00672 HAMP domain GYO_3615 PF07730 Histidine kinase GYO_3615 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GYO_3616 PF09922 Cell wall-active antibiotics response 4TMS YvqF GYO_3617 PF13349 Putative adhesin GYO_3618 PF04012 PspA/IM30 family GYO_3621 PF07690 Major Facilitator Superfamily GYO_3622 PF01923 Cobalamin adenosyltransferase GYO_3623 PF00005 ABC transporter GYO_3624 PF01032 FecCD transport family GYO_3625 PF01497 Periplasmic binding protein GYO_3626 PF00106 short chain dehydrogenase GYO_3627 PF08450 SMP-30/Gluconolactonase/LRE-like region GYO_3628 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GYO_3628 PF00512 His Kinase A (phospho-acceptor) domain GYO_3629 PF00486 Transcriptional regulatory protein, C terminal GYO_3629 PF00072 Response regulator receiver domain GYO_3631 PF04545 Sigma-70, region 4 GYO_3632 PF12841 YvrJ protein family GYO_3633 PF00190 Cupin GYO_3634 PF14184 Regulatory protein YrvL GYO_3635 PF12704 MacB-like periplasmic core domain GYO_3635 PF02687 FtsX-like permease family GYO_3636 PF00005 ABC transporter GYO_3637 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion GYO_3638 PF00005 ABC transporter GYO_3639 PF01032 FecCD transport family GYO_3640 PF01032 FecCD transport family GYO_3641 PF01497 Periplasmic binding protein GYO_3644 PF13520 Amino acid permease GYO_3645 PF09575 Small spore protein J (Spore_SspJ) GYO_3646 PF04307 LexA-binding, inner membrane-associated putative hydrolase GYO_3647 PF00884 Sulfatase GYO_3648 PF12727 PBP superfamily domain GYO_3648 PF12728 Helix-turn-helix domain GYO_3650 PF00528 Binding-protein-dependent transport system inner membrane component GYO_3651 PF00248 Aldo/keto reductase family GYO_3654 PF00999 Sodium/hydrogen exchanger family GYO_3655 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain GYO_3655 PF01077 Nitrite and sulphite reductase 4Fe-4S domain GYO_3656 PF00667 FAD binding domain GYO_3656 PF00258 Flavodoxin GYO_3656 PF00175 Oxidoreductase NAD-binding domain GYO_3657 PF13538 UvrD-like helicase C-terminal domain GYO_3659 PF03458 UPF0126 domain GYO_3660 PF02600 Disulfide bond formation protein DsbB GYO_3661 PF13462 Thioredoxin GYO_3662 PF00403 Heavy-metal-associated domain GYO_3663 PF00403 Heavy-metal-associated domain GYO_3664 PF00403 Heavy-metal-associated domain GYO_3665 PF02583 Metal-sensitive transcriptional repressor GYO_3666 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GYO_3666 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GYO_3667 PF02525 Flavodoxin-like fold GYO_3669 PF00392 Bacterial regulatory proteins, gntR family GYO_3669 PF07729 FCD domain GYO_3670 PF00892 EamA-like transporter family GYO_3672 PF17314 Family of unknown function (DUF5360) GYO_3673 PF00893 Small Multidrug Resistance protein GYO_3674 PF00440 Bacterial regulatory proteins, tetR family GYO_3675 PF00106 short chain dehydrogenase GYO_3677 PF01668 SmpB protein GYO_3678 PF00575 S1 RNA binding domain GYO_3678 PF00773 RNB domain GYO_3678 PF08206 Ribonuclease B OB domain GYO_3678 PF17876 Cold shock domain GYO_3679 PF12146 Serine aminopeptidase, S33 GYO_3680 PF03840 Preprotein translocase SecG subunit GYO_3681 PF00561 alpha/beta hydrolase fold GYO_3682 PF01381 Helix-turn-helix GYO_3685 PF01638 HxlR-like helix-turn-helix GYO_3686 PF00672 HAMP domain GYO_3686 PF12729 Four helix bundle sensory module for signal transduction GYO_3686 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GYO_3687 PF00512 His Kinase A (phospho-acceptor) domain GYO_3687 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GYO_3688 PF00486 Transcriptional regulatory protein, C terminal GYO_3688 PF00072 Response regulator receiver domain GYO_3691 PF00005 ABC transporter GYO_3694 PF05147 Lanthionine synthetase C-like protein GYO_3695 PF00005 ABC transporter GYO_3696 PF04738 Lantibiotic dehydratase, N terminus GYO_3696 PF14028 Lantibiotic biosynthesis dehydratase C-term GYO_3697 PF00528 Binding-protein-dependent transport system inner membrane component GYO_3698 PF04069 Substrate binding domain of ABC-type glycine betaine transport system GYO_3699 PF00528 Binding-protein-dependent transport system inner membrane component GYO_3700 PF00005 ABC transporter GYO_3700 PF00571 CBS domain GYO_3702 PF12802 MarR family GYO_3703 PF00528 Binding-protein-dependent transport system inner membrane component GYO_3704 PF04069 Substrate binding domain of ABC-type glycine betaine transport system GYO_3705 PF00528 Binding-protein-dependent transport system inner membrane component GYO_3706 PF00571 CBS domain GYO_3706 PF00005 ABC transporter GYO_3707 PF12802 MarR family GYO_3708 PF08000 Bacterial PH domain GYO_3708 PF11724 YvbH-like oligomerisation region GYO_3710 PF13240 zinc-ribbon domain GYO_3712 PF00583 Acetyltransferase (GNAT) family GYO_3713 PF00113 Enolase, C-terminal TIM barrel domain GYO_3713 PF03952 Enolase, N-terminal domain GYO_3714 PF06415 BPG-independent PGAM N-terminus (iPGM_N) GYO_3714 PF01676 Metalloenzyme superfamily GYO_3715 PF00121 Triosephosphate isomerase GYO_3716 PF00162 Phosphoglycerate kinase GYO_3718 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GYO_3718 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain GYO_3719 PF04198 Putative sugar-binding domain GYO_3721 PF00083 Sugar (and other) transporter GYO_3722 PF00392 Bacterial regulatory proteins, gntR family GYO_3723 PF00296 Luciferase-like monooxygenase GYO_3725 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GYO_3725 PF03466 LysR substrate binding domain GYO_3726 PF00892 EamA-like transporter family GYO_3727 PF00324 Amino acid permease GYO_3728 PF00704 Glycosyl hydrolases family 18 GYO_3729 PF00665 Integrase core domain GYO_3729 PF13276 HTH-like domain GYO_3729 PF13333 Integrase core domain GYO_3731 PF00704 Glycosyl hydrolases family 18 GYO_3732 PF02589 LUD domain GYO_3733 PF13183 4Fe-4S dicluster domain GYO_3733 PF11870 Domain of unknown function (DUF3390) GYO_3733 PF02589 LUD domain GYO_3734 PF02754 Cysteine-rich domain GYO_3738 PF00072 Response regulator receiver domain GYO_3738 PF00196 Bacterial regulatory proteins, luxR family GYO_3739 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GYO_3739 PF07730 Histidine kinase GYO_3741 PF00005 ABC transporter GYO_3742 PF12697 Alpha/beta hydrolase family GYO_3743 PF13426 PAS domain GYO_3743 PF07228 Stage II sporulation protein E (SpoIIE) GYO_3744 PF07745 Glycosyl hydrolase family 53 GYO_3745 PF08532 Beta-galactosidase trimerisation domain GYO_3745 PF02449 Beta-galactosidase GYO_3745 PF08533 Beta-galactosidase C-terminal domain GYO_3746 PF00528 Binding-protein-dependent transport system inner membrane component GYO_3747 PF00528 Binding-protein-dependent transport system inner membrane component GYO_3748 PF13416 Bacterial extracellular solute-binding protein GYO_3749 PF00356 Bacterial regulatory proteins, lacI family GYO_3753 PF02652 L-lactate permease GYO_3754 PF04552 Sigma-54, DNA binding domain GYO_3754 PF00309 Sigma-54 factor, Activator interacting domain (AID) GYO_3754 PF04963 Sigma-54 factor, core binding domain GYO_3756 PF09628 YvfG protein GYO_3757 PF04230 Polysaccharide pyruvyl transferase GYO_3758 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family GYO_3759 PF17836 PglD N-terminal domain GYO_3759 PF00132 Bacterial transferase hexapeptide (six repeats) GYO_3760 PF02397 Bacterial sugar transferase GYO_3761 PF14667 Polysaccharide biosynthesis C-terminal domain GYO_3761 PF01943 Polysaccharide biosynthesis protein GYO_3762 PF00535 Glycosyl transferase family 2 GYO_3763 PF04230 Polysaccharide pyruvyl transferase GYO_3764 PF00535 Glycosyl transferase family 2 GYO_3766 PF13439 Glycosyltransferase Family 4 GYO_3766 PF00534 Glycosyl transferases group 1 GYO_3767 PF00535 Glycosyl transferase family 2 GYO_3768 PF00534 Glycosyl transferases group 1 GYO_3768 PF13439 Glycosyltransferase Family 4 GYO_3769 PF02719 Polysaccharide biosynthesis protein GYO_3770 PF13614 AAA domain GYO_3771 PF02706 Chain length determinant protein GYO_3772 PF08671 Anti-repressor SinI GYO_3772 PF01381 Helix-turn-helix GYO_3773 PF00135 Carboxylesterase family GYO_3775 PF05870 Phenolic acid decarboxylase (PAD) GYO_3777 PF01177 Asp/Glu/Hydantoin racemase GYO_3778 PF11954 Domain of unknown function (DUF3471) GYO_3778 PF00144 Beta-lactamase GYO_3780 PF02435 Levansucrase/Invertase GYO_3781 PF08244 Glycosyl hydrolases family 32 C terminal GYO_3781 PF00251 Glycosyl hydrolases family 32 N-terminal domain GYO_3782 PF13520 Amino acid permease GYO_3783 PF00440 Bacterial regulatory proteins, tetR family GYO_3783 PF17934 Tetracyclin repressor-like, C-terminal domain GYO_3784 PF00893 Small Multidrug Resistance protein GYO_3785 PF00893 Small Multidrug Resistance protein GYO_3786 PF11553 Protein of unknown function (DUF3231) GYO_3788 PF00574 Clp protease GYO_3789 PF13419 Haloacid dehalogenase-like hydrolase GYO_3790 PF16657 Maltogenic Amylase, C-terminal domain GYO_3790 PF00128 Alpha amylase, catalytic domain GYO_3791 PF03636 Glycosyl hydrolase family 65, N-terminal domain GYO_3791 PF03632 Glycosyl hydrolase family 65 central catalytic domain GYO_3791 PF03633 Glycosyl hydrolase family 65, C-terminal domain GYO_3792 PF06691 Protein of unknown function (DUF1189) GYO_3793 PF00528 Binding-protein-dependent transport system inner membrane component GYO_3794 PF00528 Binding-protein-dependent transport system inner membrane component GYO_3795 PF13416 Bacterial extracellular solute-binding protein GYO_3796 PF00128 Alpha amylase, catalytic domain GYO_3796 PF02903 Alpha amylase, N-terminal ig-like domain GYO_3797 PF00356 Bacterial regulatory proteins, lacI family GYO_3798 PF03641 Possible lysine decarboxylase GYO_3799 PF03819 MazG nucleotide pyrophosphohydrolase domain GYO_3800 PF01740 STAS domain GYO_3800 PF00916 Sulfate permease family GYO_3801 PF00484 Carbonic anhydrase GYO_3802 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain GYO_3802 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain GYO_3803 PF02687 FtsX-like permease family GYO_3804 PF00005 ABC transporter GYO_3805 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GYO_3806 PF00486 Transcriptional regulatory protein, C terminal GYO_3806 PF00072 Response regulator receiver domain GYO_3808 PF00797 N-acetyltransferase GYO_3809 PF00381 PTS HPr component phosphorylation site GYO_3810 PF10298 WhiA N-terminal LAGLIDADG-like domain GYO_3810 PF02650 WhiA C-terminal HTH domain GYO_3810 PF14527 WhiA LAGLIDADG-like domain GYO_3811 PF01933 Uncharacterised protein family UPF0052 GYO_3812 PF03668 P-loop ATPase protein family GYO_3813 PF00293 NUDIX domain GYO_3815 PF07992 Pyridine nucleotide-disulphide oxidoreductase GYO_3816 PF00877 NlpC/P60 family GYO_3818 PF00005 ABC transporter GYO_3818 PF00664 ABC transporter transmembrane region GYO_3823 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase GYO_3823 PF01502 Phosphoribosyl-AMP cyclohydrolase GYO_3824 PF00977 Histidine biosynthesis protein GYO_3825 PF00977 Histidine biosynthesis protein GYO_3826 PF00117 Glutamine amidotransferase class-I GYO_3827 PF00475 Imidazoleglycerol-phosphate dehydratase GYO_3828 PF00815 Histidinol dehydrogenase GYO_3829 PF01634 ATP phosphoribosyltransferase GYO_3830 PF13393 Histidyl-tRNA synthetase GYO_3831 PF13529 Peptidase_C39 like family GYO_3832 PF03211 Pectate lyase GYO_3833 PF14602 Hexapeptide repeat of succinyl-transferase GYO_3834 PF13419 Haloacid dehalogenase-like hydrolase GYO_3835 PF07670 Nucleoside recognition GYO_3836 PF01790 Prolipoprotein diacylglyceryl transferase GYO_3837 PF07475 HPr Serine kinase C-terminal domain GYO_3837 PF02603 HPr Serine kinase N terminus GYO_3838 PF01979 Amidohydrolase family GYO_3839 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase GYO_3841 PF00149 Calcineurin-like phosphoesterase GYO_3842 PF01047 MarR family GYO_3843 PF00067 Cytochrome P450 GYO_3844 PF16715 Cyclodipeptide synthase GYO_3846 PF01047 MarR family GYO_3847 PF07690 Major Facilitator Superfamily GYO_3848 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV GYO_3849 PF04024 PspC domain GYO_3850 PF13349 Putative adhesin GYO_3853 PF00669 Bacterial flagellin N-terminal helical region GYO_3853 PF00700 Bacterial flagellin C-terminal helical region GYO_3854 PF17760 UvrA interaction domain GYO_3854 PF00005 ABC transporter GYO_3854 PF17755 UvrA DNA-binding domain GYO_3855 PF02151 UvrB/uvrC motif GYO_3855 PF12344 Ultra-violet resistance protein B GYO_3855 PF04851 Type III restriction enzyme, res subunit GYO_3855 PF17757 UvrB interaction domain GYO_3855 PF00271 Helicase conserved C-terminal domain GYO_3856 PF09964 Uncharacterized protein conserved in bacteria (DUF2198) GYO_3859 PF00391 PEP-utilising enzyme, mobile domain GYO_3859 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain GYO_3860 PF00440 Bacterial regulatory proteins, tetR family GYO_3861 PF07690 Major Facilitator Superfamily GYO_3862 PF17820 PDZ domain GYO_3863 PF17423 Swarming motility protein GYO_3864 PF01471 Putative peptidoglycan binding domain GYO_3864 PF03572 Peptidase family S41 GYO_3864 PF17820 PDZ domain GYO_3865 PF18075 FtsX extracellular domain GYO_3865 PF02687 FtsX-like permease family GYO_3866 PF00005 ABC transporter GYO_3867 PF13442 Cytochrome C oxidase, cbb3-type, subunit III GYO_3868 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 GYO_3868 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) GYO_3869 PF13333 Integrase core domain GYO_3869 PF00665 Integrase core domain GYO_3869 PF13276 HTH-like domain GYO_3871 PF03462 PCRF domain GYO_3871 PF00472 RF-1 domain GYO_3872 PF07516 SecA Wing and Scaffold domain GYO_3872 PF02810 SEC-C motif GYO_3872 PF07517 SecA DEAD-like domain GYO_3872 PF01043 SecA preprotein cross-linking domain GYO_3873 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein GYO_3873 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus GYO_3877 PF02561 Flagellar protein FliS GYO_3878 PF07196 Flagellin hook IN motif GYO_3878 PF07195 Flagellar hook-associated protein 2 C-terminus GYO_3878 PF02465 Flagellar hook-associated protein 2 N-terminus GYO_3879 PF03646 FlaG protein GYO_3880 PF00669 Bacterial flagellin N-terminal helical region GYO_3880 PF00700 Bacterial flagellin C-terminal helical region GYO_3881 PF02599 Global regulator protein family GYO_3882 PF02623 FliW protein GYO_3884 PF00700 Bacterial flagellin C-terminal helical region GYO_3884 PF00669 Bacterial flagellin N-terminal helical region GYO_3885 PF00460 Flagella basal body rod protein GYO_3885 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GYO_3886 PF05130 FlgN protein GYO_3887 PF04316 Anti-sigma-28 factor, FlgM GYO_3890 PF10719 Late competence development protein ComFB GYO_3891 PF00271 Helicase conserved C-terminal domain GYO_3891 PF04851 Type III restriction enzyme, res subunit GYO_3892 PF02645 Uncharacterised protein, DegV family COG1307 GYO_3893 PF00196 Bacterial regulatory proteins, luxR family GYO_3893 PF00072 Response regulator receiver domain GYO_3894 PF05384 Sensor protein DegS GYO_3894 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GYO_3894 PF07730 Histidine kinase GYO_3895 PF09186 Domain of unknown function (DUF1949) GYO_3895 PF01205 Uncharacterized protein family UPF0029 GYO_3896 PF03816 Cell envelope-related transcriptional attenuator domain GYO_3903 PF00005 ABC transporter GYO_3905 PF00953 Glycosyl transferase family 4 GYO_3907 PF00535 Glycosyl transferase family 2 GYO_3908 PF02706 Chain length determinant protein GYO_3909 PF04932 O-Antigen ligase GYO_3910 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain GYO_3910 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GYO_3910 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain GYO_3911 PF00534 Glycosyl transferases group 1 GYO_3911 PF13439 Glycosyltransferase Family 4 GYO_3912 PF14667 Polysaccharide biosynthesis C-terminal domain GYO_3912 PF01943 Polysaccharide biosynthesis protein GYO_3913 PF02397 Bacterial sugar transferase GYO_3914 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 GYO_3914 PF00535 Glycosyl transferase family 2 GYO_3915 PF04122 Putative cell wall binding repeat 2 GYO_3915 PF01520 N-acetylmuramoyl-L-alanine amidase GYO_3916 PF04122 Putative cell wall binding repeat 2 GYO_3916 PF08486 Stage II sporulation protein GYO_3918 PF03816 Cell envelope-related transcriptional attenuator domain GYO_3919 PF02350 UDP-N-acetylglucosamine 2-epimerase GYO_3920 PF00535 Glycosyl transferase family 2 GYO_3920 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 GYO_3921 PF00534 Glycosyl transferases group 1 GYO_3923 PF00483 Nucleotidyl transferase GYO_3924 PF00005 ABC transporter GYO_3925 PF01061 ABC-2 type transporter GYO_3927 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase GYO_3928 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase GYO_3929 PF01467 Cytidylyltransferase-like GYO_3930 PF03808 Glycosyl transferase WecB/TagA/CpsF family GYO_3932 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase GYO_3933 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase GYO_3934 PF16912 Glucose dehydrogenase C-terminus GYO_3934 PF08240 Alcohol dehydrogenase GroES-like domain GYO_3935 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase GYO_3936 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase GYO_3937 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase GYO_3937 PF05036 Sporulation related domain GYO_3937 PF08239 Bacterial SH3 domain GYO_3938 PF01238 Phosphomannose isomerase type I GYO_3940 PF03845 Spore germination protein GYO_3941 PF05504 Spore germination B3/ GerAC like, C-terminal GYO_3942 PF00083 Sugar (and other) transporter GYO_3943 PF03816 Cell envelope-related transcriptional attenuator domain GYO_3945 PF00877 NlpC/P60 family GYO_3947 PF09587 Bacterial capsule synthesis protein PGA_cap GYO_3948 PF14102 Capsule biosynthesis CapC GYO_3949 PF08245 Mur ligase middle domain GYO_3950 PF00356 Bacterial regulatory proteins, lacI family GYO_3951 PF00294 pfkB family carbohydrate kinase GYO_3952 PF05025 RbsD / FucU transport protein family GYO_3953 PF00005 ABC transporter GYO_3954 PF02653 Branched-chain amino acid transport system / permease component GYO_3955 PF13407 Periplasmic binding protein domain GYO_3956 PF08239 Bacterial SH3 domain GYO_3957 PF13031 Protein of unknown function (DUF3892) GYO_3958 PF02525 Flavodoxin-like fold GYO_3959 PF03306 Alpha-acetolactate decarboxylase GYO_3960 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GYO_3960 PF00205 Thiamine pyrophosphate enzyme, central domain GYO_3960 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GYO_3961 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GYO_3961 PF03466 LysR substrate binding domain GYO_3962 PF08757 CotH kinase protein GYO_3964 PF01613 Flavin reductase like domain GYO_3967 PF13404 AsnC-type helix-turn-helix domain GYO_3967 PF01037 Lrp/AsnC ligand binding domain GYO_3968 PF02417 Chromate transporter GYO_3969 PF02417 Chromate transporter GYO_3971 PF03358 NADPH-dependent FMN reductase GYO_3972 PF03466 LysR substrate binding domain GYO_3972 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GYO_3974 PF01497 Periplasmic binding protein GYO_3974 PF12833 Helix-turn-helix domain GYO_3975 PF04493 Endonuclease V GYO_3980 PF04740 LXG domain of WXG superfamily GYO_3980 PF14431 YwqJ-like deaminase GYO_3980 PF14449 Pre-toxin TG GYO_3982 PF16888 Domain of unknown function (DUF5082) GYO_3984 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain GYO_3984 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain GYO_3984 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain GYO_3986 PF13614 AAA domain GYO_3987 PF13807 G-rich domain on putative tyrosine kinase GYO_3987 PF02706 Chain length determinant protein GYO_3989 PF04434 SWIM zinc finger GYO_3990 PF00176 SNF2 family N-terminal domain GYO_3990 PF12419 SNF2 Helicase protein GYO_3990 PF00271 Helicase conserved C-terminal domain GYO_3993 PF00455 DeoR C terminal sensor domain GYO_3993 PF08220 DeoR-like helix-turn-helix domain GYO_3994 PF00436 Single-strand binding protein family GYO_3996 PF14183 YwpF-like protein GYO_3997 PF04203 Sortase domain GYO_3999 PF00072 Response regulator receiver domain GYO_3999 PF04397 LytTr DNA-binding domain GYO_4000 PF06580 Histidine kinase GYO_4000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GYO_4001 PF01741 Large-conductance mechanosensitive channel, MscL GYO_4002 PF07977 FabA-like domain GYO_4003 PF18801 response regulator aspartate phosphatase H, N terminal GYO_4004 PF00460 Flagella basal body rod protein GYO_4004 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GYO_4005 PF06429 Flagellar basal body rod FlgEFG protein C-terminal GYO_4005 PF00460 Flagella basal body rod protein GYO_4007 PF12116 Stage III sporulation protein D GYO_4008 PF01047 MarR family GYO_4009 PF07690 Major Facilitator Superfamily GYO_4010 PF13229 Right handed beta helix region GYO_4011 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin GYO_4012 PF07690 Major Facilitator Superfamily GYO_4013 PF00857 Isochorismatase family GYO_4015 PF00909 Ammonium Transporter Family GYO_4016 PF00543 Nitrogen regulatory protein P-II GYO_4017 PF01569 PAP2 superfamily GYO_4018 PF04892 VanZ like family GYO_4019 PF01551 Peptidase family M23 GYO_4020 PF00583 Acetyltransferase (GNAT) family GYO_4021 PF17319 Family of unknown function (DUF5362) GYO_4022 PF03102 NeuB family GYO_4022 PF08666 SAF domain GYO_4023 PF17370 Family of unknown function (DUF5392) GYO_4024 PF13396 Phospholipase_D-nuclease N-terminal GYO_4024 PF13091 PLD-like domain GYO_4025 PF13411 MerR HTH family regulatory protein GYO_4025 PF07739 TipAS antibiotic-recognition domain GYO_4026 PF17319 Family of unknown function (DUF5362) GYO_4027 PF13460 NAD(P)H-binding GYO_4028 PF02082 Transcriptional regulator GYO_4029 PF01979 Amidohydrolase family GYO_4029 PF00449 Urease alpha-subunit, N-terminal domain GYO_4030 PF00699 Urease beta subunit GYO_4031 PF00547 Urease, gamma subunit GYO_4032 PF00005 ABC transporter GYO_4033 PF12399 Branched-chain amino acid ATP-binding cassette transporter GYO_4033 PF00005 ABC transporter GYO_4035 PF02653 Branched-chain amino acid transport system / permease component GYO_4037 PF05532 CsbD-like GYO_4039 PF18801 response regulator aspartate phosphatase H, N terminal GYO_4039 PF17874 MalT-like TPR region GYO_4041 PF04055 Radical SAM superfamily GYO_4041 PF06463 Molybdenum Cofactor Synthesis C GYO_4042 PF02634 FdhD/NarQ family GYO_4044 PF00092 von Willebrand factor type A domain GYO_4046 PF00092 von Willebrand factor type A domain GYO_4047 PF08486 Stage II sporulation protein GYO_4049 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) GYO_4050 PF08680 TATA-box binding GYO_4051 PF06612 Protein of unknown function (DUF1146) GYO_4054 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain GYO_4054 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain GYO_4055 PF02874 ATP synthase alpha/beta family, beta-barrel domain GYO_4055 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GYO_4056 PF00231 ATP synthase GYO_4057 PF00306 ATP synthase alpha/beta chain, C terminal domain GYO_4057 PF02874 ATP synthase alpha/beta family, beta-barrel domain GYO_4057 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GYO_4058 PF00213 ATP synthase delta (OSCP) subunit GYO_4059 PF00430 ATP synthase B/B' CF(0) GYO_4061 PF00137 ATP synthase subunit C GYO_4062 PF00119 ATP synthase A chain GYO_4063 PF03899 ATP synthase I chain GYO_4065 PF00464 Serine hydroxymethyltransferase GYO_4066 PF04260 Protein of unknown function (DUF436) GYO_4067 PF02502 Ribose/Galactose Isomerase GYO_4069 PF01451 Low molecular weight phosphotyrosine protein phosphatase GYO_4070 PF02659 Putative manganese efflux pump GYO_4071 PF01300 Telomere recombination GYO_4071 PF03481 Putative GTP-binding controlling metal-binding GYO_4074 PF17094 Uncharacterised protein family (UPF0715) GYO_4075 PF17247 Family of unknown function (DUF5316) GYO_4076 PF05175 Methyltransferase small domain GYO_4076 PF17827 PrmC N-terminal domain GYO_4077 PF03462 PCRF domain GYO_4077 PF00472 RF-1 domain GYO_4078 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GYO_4079 PF13411 MerR HTH family regulatory protein GYO_4080 PF03547 Membrane transport protein GYO_4081 PF00390 Malic enzyme, N-terminal domain GYO_4081 PF03949 Malic enzyme, NAD binding domain GYO_4082 PF00265 Thymidine kinase GYO_4083 PF01197 Ribosomal protein L31 GYO_4084 PF07498 Rho termination factor, N-terminal domain GYO_4084 PF07497 Rho termination factor, RNA-binding domain GYO_4084 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain GYO_4086 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded GYO_4087 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) GYO_4089 PF00923 Transaldolase/Fructose-6-phosphate aldolase GYO_4090 PF01116 Fructose-bisphosphate aldolase class-II GYO_4091 PF00072 Response regulator receiver domain GYO_4092 PF10740 Domain of unknown function (DUF2529) GYO_4093 PF06418 CTP synthase N-terminus GYO_4093 PF00117 Glutamine amidotransferase class-I GYO_4095 PF05066 HB1, ASXL, restriction endonuclease HTH domain GYO_4096 PF02770 Acyl-CoA dehydrogenase, middle domain GYO_4096 PF02771 Acyl-CoA dehydrogenase, N-terminal domain GYO_4096 PF00441 Acyl-CoA dehydrogenase, C-terminal domain GYO_4097 PF02754 Cysteine-rich domain GYO_4097 PF13183 4Fe-4S dicluster domain GYO_4098 PF13091 PLD-like domain GYO_4099 PF03851 UV-endonuclease UvdE GYO_4101 PF01872 RibD C-terminal domain GYO_4102 PF00005 ABC transporter GYO_4102 PF00664 ABC transporter transmembrane region GYO_4103 PF13396 Phospholipase_D-nuclease N-terminal GYO_4103 PF13091 PLD-like domain GYO_4105 PF02665 Nitrate reductase gamma subunit GYO_4106 PF02613 Nitrate reductase delta subunit GYO_4107 PF14711 Respiratory nitrate reductase beta C-terminal GYO_4107 PF13247 4Fe-4S dicluster domain GYO_4108 PF01568 Molydopterin dinucleotide binding domain GYO_4108 PF00384 Molybdopterin oxidoreductase GYO_4108 PF14710 Respiratory nitrate reductase alpha N-terminal GYO_4111 PF14256 YwiC-like protein GYO_4112 PF00325 Bacterial regulatory proteins, crp family GYO_4112 PF00027 Cyclic nucleotide-binding domain GYO_4113 PF07690 Major Facilitator Superfamily GYO_4114 PF05746 DALR anticodon binding domain GYO_4114 PF00750 tRNA synthetases class I (R) GYO_4114 PF03485 Arginyl tRNA synthetase N terminal domain GYO_4115 PF09148 Domain of unknown function (DUF1934) GYO_4116 PF11420 Bacteriocin subtilosin A GYO_4117 PF05402 Coenzyme PQQ synthesis protein D (PqqD) GYO_4117 PF04055 Radical SAM superfamily GYO_4117 PF13186 Iron-sulfur cluster-binding domain GYO_4119 PF00005 ABC transporter GYO_4122 PF00675 Insulinase (Peptidase family M16) GYO_4126 PF18801 response regulator aspartate phosphatase H, N terminal GYO_4131 PF00005 ABC transporter GYO_4133 PF00491 Arginase family GYO_4134 PF17284 Spermidine synthase tetramerisation domain GYO_4135 PF00905 Penicillin binding protein transpeptidase domain GYO_4135 PF00912 Transglycosylase GYO_4137 PF08741 YwhD family GYO_4138 PF02163 Peptidase family M50 GYO_4139 PF01361 Tautomerase enzyme GYO_4140 PF01047 MarR family GYO_4141 PF03129 Anticodon binding domain GYO_4141 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain GYO_4141 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) GYO_4141 PF02824 TGS domain GYO_4146 PF01966 HD domain GYO_4147 PF07293 Protein of unknown function (DUF1450) GYO_4149 PF00892 EamA-like transporter family GYO_4150 PF03099 Biotin/lipoate A/B protein ligase family GYO_4151 PF03466 LysR substrate binding domain GYO_4151 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GYO_4152 PF01515 Phosphate acetyl/butaryl transferase GYO_4155 PF00155 Aminotransferase class I and II GYO_4156 PF07690 Major Facilitator Superfamily GYO_4159 PF07883 Cupin domain GYO_4161 PF07690 Major Facilitator Superfamily GYO_4162 PF00324 Amino acid permease GYO_4163 PF01546 Peptidase family M20/M25/M40 GYO_4164 PF00171 Aldehyde dehydrogenase family GYO_4166 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GYO_4166 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain GYO_4167 PF17735 Biofilm surface layer A GYO_4170 PF16363 GDP-mannose 4,6 dehydratase GYO_4171 PF00483 Nucleotidyl transferase GYO_4173 PF02348 Cytidylyltransferase GYO_4174 PF08666 SAF domain GYO_4174 PF03102 NeuB family GYO_4175 PF00583 Acetyltransferase (GNAT) family GYO_4176 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family GYO_4177 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase GYO_4178 PF00535 Glycosyl transferase family 2 GYO_4180 PF09671 Spore coat protein (Spore_GerQ) GYO_4181 PF04241 Protein of unknown function (DUF423) GYO_4182 PF00860 Permease family GYO_4183 PF17261 Family of unknown function (DUF5327) GYO_4185 PF00171 Aldehyde dehydrogenase family GYO_4186 PF03167 Uracil DNA glycosylase superfamily GYO_4187 PF00535 Glycosyl transferase family 2 GYO_4190 PF03551 Transcriptional regulator PadR-like family GYO_4192 PF08543 Phosphomethylpyrimidine kinase GYO_4194 PF08244 Glycosyl hydrolases family 32 C terminal GYO_4194 PF00251 Glycosyl hydrolases family 32 N-terminal domain GYO_4195 PF00367 phosphotransferase system, EIIB GYO_4195 PF02378 Phosphotransferase system, EIIC GYO_4196 PF01226 Formate/nitrite transporter GYO_4197 PF03123 CAT RNA binding domain GYO_4197 PF00874 PRD domain GYO_4199 PF05922 Peptidase inhibitor I9 GYO_4199 PF13860 FlgD Ig-like domain GYO_4199 PF02225 PA domain GYO_4199 PF00082 Subtilase family GYO_4200 PF00296 Luciferase-like monooxygenase GYO_4201 PF00881 Nitroreductase family GYO_4203 PF01098 Cell cycle protein GYO_4205 PF17368 Spore morphogenesis and germination YwcE GYO_4206 PF03626 Prokaryotic Cytochrome C oxidase subunit IV GYO_4207 PF00510 Cytochrome c oxidase subunit III GYO_4208 PF00115 Cytochrome C and Quinol oxidase polypeptide I GYO_4209 PF02790 Cytochrome C oxidase subunit II, transmembrane domain GYO_4209 PF00116 Cytochrome C oxidase subunit II, periplasmic domain GYO_4211 PF04226 Transglycosylase associated protein GYO_4212 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain GYO_4212 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain GYO_4213 PF08544 GHMP kinases C terminal GYO_4213 PF00288 GHMP kinases N terminal domain GYO_4213 PF10509 Galactokinase galactose-binding signature GYO_4214 PF04138 GtrA-like protein GYO_4215 PF00440 Bacterial regulatory proteins, tetR family GYO_4216 PF08671 Anti-repressor SinI GYO_4217 PF04341 Protein of unknown function, DUF485 GYO_4218 PF00474 Sodium:solute symporter family GYO_4219 PF01323 DSBA-like thioredoxin domain GYO_4220 PF10518 TAT (twin-arginine translocation) pathway signal sequence GYO_4220 PF04261 Dyp-type peroxidase family GYO_4221 PF09375 Imelysin GYO_4222 PF03239 Iron permease FTR1 family GYO_4224 PF02581 Thiamine monophosphate synthase GYO_4225 PF02110 Hydroxyethylthiazole kinase family GYO_4226 PF03466 LysR substrate binding domain GYO_4226 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GYO_4227 PF03788 LrgA family GYO_4228 PF04172 LrgB-like family GYO_4231 PF09962 Uncharacterized conserved protein (DUF2196) GYO_4232 PF10672 S-adenosylmethionine-dependent methyltransferase GYO_4232 PF17785 PUA-like domain GYO_4233 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GYO_4234 PF10924 Protein of unknown function (DUF2711) GYO_4235 PF02378 Phosphotransferase system, EIIC GYO_4237 PF00082 Subtilase family GYO_4238 PF00367 phosphotransferase system, EIIB GYO_4238 PF02378 Phosphotransferase system, EIIC GYO_4239 PF00874 PRD domain GYO_4239 PF03123 CAT RNA binding domain GYO_4240 PF01501 Glycosyl transferase family 8 GYO_4241 PF09529 Integral membrane protein (intg_mem_TP0381) GYO_4242 PF01047 MarR family GYO_4243 PF00579 tRNA synthetases class I (W and Y) GYO_4243 PF01479 S4 domain GYO_4245 PF04389 Peptidase family M28 GYO_4245 PF02225 PA domain GYO_4246 PF04607 Region found in RelA / SpoT proteins GYO_4247 PF01040 UbiA prenyltransferase family GYO_4250 PF12459 D-Ala-teichoic acid biosynthesis protein GYO_4251 PF00501 AMP-binding enzyme GYO_4251 PF13193 AMP-binding enzyme C-terminal domain GYO_4252 PF03062 MBOAT, membrane-bound O-acyltransferase family GYO_4253 PF00550 Phosphopantetheine attachment site GYO_4254 PF04914 DltD protein GYO_4255 PF00106 short chain dehydrogenase GYO_4256 PF01063 Amino-transferase class IV GYO_4257 PF11975 Family 4 glycosyl hydrolase C-terminal domain GYO_4257 PF02056 Family 4 glycosyl hydrolase GYO_4258 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit GYO_4259 PF02378 Phosphotransferase system, EIIC GYO_4260 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit GYO_4261 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 GYO_4261 PF08279 HTH domain GYO_4261 PF05043 Mga helix-turn-helix domain GYO_4261 PF00874 PRD domain GYO_4263 PF02245 Methylpurine-DNA glycosylase (MPG) GYO_4264 PF00199 Catalase GYO_4264 PF06628 Catalase-related immune-responsive GYO_4265 PF07690 Major Facilitator Superfamily GYO_4266 PF12679 ABC-2 family transporter protein GYO_4267 PF13732 Domain of unknown function (DUF4162) GYO_4267 PF00005 ABC transporter GYO_4268 PF13396 Phospholipase_D-nuclease N-terminal GYO_4270 PF17280 Family of unknown function (DUF5345) GYO_4271 PF08281 Sigma-70, region 4 GYO_4271 PF04542 Sigma-70 region 2 GYO_4272 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin GYO_4273 PF01256 Carbohydrate kinase GYO_4274 PF00664 ABC transporter transmembrane region GYO_4274 PF00005 ABC transporter GYO_4275 PF00664 ABC transporter transmembrane region GYO_4275 PF00005 ABC transporter GYO_4276 PF02322 Cytochrome bd terminal oxidase subunit II GYO_4277 PF01654 Cytochrome bd terminal oxidase subunit I GYO_4278 PF03390 2-hydroxycarboxylate transporter family GYO_4279 PF01435 Peptidase family M48 GYO_4281 PF01522 Polysaccharide deacetylase GYO_4285 PF03459 TOBE domain GYO_4285 PF00005 ABC transporter GYO_4285 PF17912 MalK OB fold domain GYO_4286 PF13556 PucR C-terminal helix-turn-helix domain GYO_4287 PF00171 Aldehyde dehydrogenase family GYO_4288 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 GYO_4288 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) GYO_4289 PF11611 Domain of unknown function (DUF4352) GYO_4290 PF16363 GDP-mannose 4,6 dehydratase GYO_4293 PF07730 Histidine kinase GYO_4294 PF00196 Bacterial regulatory proteins, luxR family GYO_4294 PF00072 Response regulator receiver domain GYO_4295 PF07687 Peptidase dimerisation domain GYO_4295 PF01546 Peptidase family M20/M25/M40 GYO_4298 PF04525 LURP-one-related GYO_4300 PF01717 Cobalamin-independent synthase, Catalytic domain GYO_4301 PF01717 Cobalamin-independent synthase, Catalytic domain GYO_4303 PF01144 Coenzyme A transferase GYO_4304 PF01144 Coenzyme A transferase GYO_4306 PF08241 Methyltransferase domain GYO_4307 PF07662 Na+ dependent nucleoside transporter C-terminus GYO_4307 PF01773 Na+ dependent nucleoside transporter N-terminus GYO_4310 PF00199 Catalase GYO_4310 PF06628 Catalase-related immune-responsive GYO_4310 PF18011 C-terminal domain found in long catalases GYO_4311 PF03600 Citrate transporter GYO_4312 PF04239 Protein of unknown function (DUF421) GYO_4314 PF00232 Glycosyl hydrolase family 1 GYO_4315 PF00367 phosphotransferase system, EIIB GYO_4315 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 GYO_4315 PF02378 Phosphotransferase system, EIIC GYO_4317 PF03123 CAT RNA binding domain GYO_4317 PF00874 PRD domain GYO_4320 PF11700 Vacuole effluxer Atg22 like GYO_4321 PF03880 DbpA RNA binding domain GYO_4321 PF00270 DEAD/DEAH box helicase GYO_4321 PF00271 Helicase conserved C-terminal domain GYO_4322 PF13472 GDSL-like Lipase/Acylhydrolase family GYO_4327 PF00892 EamA-like transporter family GYO_4330 PF05593 RHS Repeat GYO_4331 PF00892 EamA-like transporter family GYO_4332 PF00582 Universal stress protein family GYO_4333 PF00232 Glycosyl hydrolase family 1 GYO_4334 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 GYO_4334 PF00367 phosphotransferase system, EIIB GYO_4334 PF02378 Phosphotransferase system, EIIC GYO_4336 PF04740 LXG domain of WXG superfamily GYO_4336 PF14449 Pre-toxin TG GYO_4338 PF16888 Domain of unknown function (DUF5082) GYO_4339 PF04616 Glycosyl hydrolases family 43 GYO_4339 PF16369 C-terminal lipocalin-like domain GYO_4341 PF09021 HutP GYO_4342 PF00221 Aromatic amino acid lyase GYO_4343 PF01175 Urocanase Rossmann-like domain GYO_4343 PF17392 Urocanase C-terminal domain GYO_4343 PF17391 Urocanase N-terminal domain GYO_4344 PF01979 Amidohydrolase family GYO_4345 PF00491 Arginase family GYO_4346 PF00324 Amino acid permease GYO_4347 PF02885 Glycosyl transferase family, helical bundle domain GYO_4347 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain GYO_4347 PF00591 Glycosyl transferase family, a/b domain GYO_4348 PF07662 Na+ dependent nucleoside transporter C-terminus GYO_4348 PF01773 Na+ dependent nucleoside transporter N-terminus GYO_4349 PF01791 DeoC/LacD family aldolase GYO_4351 PF04198 Putative sugar-binding domain GYO_4352 PF06724 Domain of Unknown Function (DUF1206) GYO_4353 PF04346 Ethanolamine utilisation protein, EutH GYO_4354 PF03972 MmgE/PrpD family GYO_4356 PF00005 ABC transporter GYO_4357 PF00528 Binding-protein-dependent transport system inner membrane component GYO_4358 PF00497 Bacterial extracellular solute-binding proteins, family 3 GYO_4361 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family GYO_4364 PF11631 Protein of unknown function (DUF3255) GYO_4368 PF01497 Periplasmic binding protein GYO_4369 PF06486 Protein of unknown function (DUF1093) GYO_4370 PF02687 FtsX-like permease family GYO_4371 PF00005 ABC transporter GYO_4372 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GYO_4373 PF00486 Transcriptional regulatory protein, C terminal GYO_4373 PF00072 Response regulator receiver domain GYO_4374 PF01116 Fructose-bisphosphate aldolase class-II GYO_4375 PF01261 Xylose isomerase-like TIM barrel GYO_4376 PF01261 Xylose isomerase-like TIM barrel GYO_4377 PF02894 Oxidoreductase family, C-terminal alpha/beta domain GYO_4377 PF01408 Oxidoreductase family, NAD-binding Rossmann fold GYO_4378 PF07690 Major Facilitator Superfamily GYO_4379 PF01261 Xylose isomerase-like TIM barrel GYO_4380 PF00205 Thiamine pyrophosphate enzyme, central domain GYO_4380 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain GYO_4380 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain GYO_4381 PF00294 pfkB family carbohydrate kinase GYO_4382 PF04962 KduI/IolB family GYO_4383 PF00171 Aldehyde dehydrogenase family GYO_4384 PF00455 DeoR C terminal sensor domain GYO_4384 PF08220 DeoR-like helix-turn-helix domain GYO_4385 PF00248 Aldo/keto reductase family GYO_4387 PF10850 Protein of unknown function (DUF2653) GYO_4388 PF00083 Sugar (and other) transporter GYO_4389 PF00183 Hsp90 protein GYO_4392 PF00440 Bacterial regulatory proteins, tetR family GYO_4393 PF00171 Aldehyde dehydrogenase family GYO_4394 PF06271 RDD family GYO_4395 PF17369 Family of unknown function (DUF5391) GYO_4396 PF06271 RDD family GYO_4397 PF04235 Protein of unknown function (DUF418) GYO_4398 PF07883 Cupin domain GYO_4399 PF00440 Bacterial regulatory proteins, tetR family GYO_4400 PF00106 short chain dehydrogenase GYO_4401 PF01047 MarR family GYO_4402 PF03788 LrgA family GYO_4403 PF04172 LrgB-like family GYO_4405 PF00999 Sodium/hydrogen exchanger family GYO_4406 PF04230 Polysaccharide pyruvyl transferase GYO_4407 PF02595 Glycerate kinase family GYO_4408 PF00392 Bacterial regulatory proteins, gntR family GYO_4408 PF07729 FCD domain GYO_4409 PF02782 FGGY family of carbohydrate kinases, C-terminal domain GYO_4409 PF00370 FGGY family of carbohydrate kinases, N-terminal domain GYO_4410 PF02447 GntP family permease GYO_4411 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain GYO_4411 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase GYO_4413 PF00578 AhpC/TSA family GYO_4414 PF07992 Pyridine nucleotide-disulphide oxidoreductase GYO_4414 PF13192 Thioredoxin domain GYO_4415 PF13784 Fic/DOC family N-terminal GYO_4415 PF02661 Fic/DOC family GYO_4418 PF00232 Glycosyl hydrolase family 1 GYO_4419 PF00367 phosphotransferase system, EIIB GYO_4419 PF02378 Phosphotransferase system, EIIC GYO_4419 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 GYO_4420 PF07702 UTRA domain GYO_4420 PF00392 Bacterial regulatory proteins, gntR family GYO_4423 PF00005 ABC transporter GYO_4425 PF04055 Radical SAM superfamily GYO_4427 PF06874 Firmicute fructose-1,6-bisphosphatase GYO_4431 PF02590 Predicted SPOUT methyltransferase GYO_4433 PF00107 Zinc-binding dehydrogenase GYO_4433 PF08240 Alcohol dehydrogenase GroES-like domain GYO_4435 PF10852 Protein of unknown function (DUF2651) GYO_4438 PF00583 Acetyltransferase (GNAT) family GYO_4439 PF18801 response regulator aspartate phosphatase H, N terminal GYO_4441 PF00491 Arginase family GYO_4442 PF00324 Amino acid permease GYO_4443 PF00202 Aminotransferase class-III GYO_4444 PF02954 Bacterial regulatory protein, Fis family GYO_4444 PF13426 PAS domain GYO_4444 PF00158 Sigma-54 interaction domain GYO_4445 PF00672 HAMP domain GYO_4445 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GYO_4445 PF00512 His Kinase A (phospho-acceptor) domain GYO_4446 PF00072 Response regulator receiver domain GYO_4446 PF00486 Transcriptional regulatory protein, C terminal GYO_4449 PF13180 PDZ domain GYO_4450 PF00753 Metallo-beta-lactamase superfamily GYO_4451 PF09648 YycH protein GYO_4452 PF07435 YycH protein GYO_4453 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase GYO_4453 PF13426 PAS domain GYO_4453 PF00672 HAMP domain GYO_4453 PF00512 His Kinase A (phospho-acceptor) domain GYO_4454 PF00072 Response regulator receiver domain GYO_4454 PF00486 Transcriptional regulatory protein, C terminal GYO_4459 PF00709 Adenylosuccinate synthetase GYO_4460 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GYO_4462 PF03796 DnaB-like helicase C terminal domain GYO_4462 PF00772 DnaB-like helicase N terminal domain GYO_4463 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) GYO_4465 PF14174 YycC-like protein GYO_4466 PF07690 Major Facilitator Superfamily GYO_4467 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase GYO_4468 PF03948 Ribosomal protein L9, C-terminal domain GYO_4468 PF01281 Ribosomal protein L9, N-terminal domain GYO_4469 PF02272 DHHA1 domain GYO_4469 PF01368 DHH family GYO_4470 PF09991 Predicted membrane protein (DUF2232) GYO_4472 PF07875 Coat F domain GYO_4473 PF01638 HxlR-like helix-turn-helix GYO_4474 PF02833 DHHA2 domain GYO_4474 PF01368 DHH family GYO_4476 PF07690 Major Facilitator Superfamily GYO_4478 PF13411 MerR HTH family regulatory protein GYO_4478 PF06445 GyrI-like small molecule binding domain GYO_4480 PF13474 SnoaL-like domain GYO_4481 PF00805 Pentapeptide repeats (8 copies) GYO_4482 PF07690 Major Facilitator Superfamily GYO_4483 PF03466 LysR substrate binding domain GYO_4483 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family GYO_4484 PF13673 Acetyltransferase (GNAT) domain GYO_4487 PF00753 Metallo-beta-lactamase superfamily GYO_4488 PF01638 HxlR-like helix-turn-helix GYO_4490 PF01047 MarR family GYO_4491 PF13673 Acetyltransferase (GNAT) domain GYO_4496 PF03190 Protein of unknown function, DUF255 GYO_4497 PF02517 CPBP intramembrane metalloprotease GYO_4498 PF00083 Sugar (and other) transporter GYO_4499 PF12464 Maltose acetyltransferase GYO_4499 PF14602 Hexapeptide repeat of succinyl-transferase GYO_4500 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily GYO_4501 PF00356 Bacterial regulatory proteins, lacI family GYO_4501 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family GYO_4502 PF03372 Endonuclease/Exonuclease/phosphatase family GYO_4503 PF00436 Single-strand binding protein family GYO_4504 PF01250 Ribosomal protein S6 GYO_4505 PF01926 50S ribosome-binding GTPase GYO_4505 PF06071 Protein of unknown function (DUF933) GYO_4506 PF06071 Protein of unknown function (DUF933) GYO_4506 PF01926 50S ribosome-binding GTPase GYO_4507 PF04879 Molybdopterin oxidoreductase Fe4S4 domain GYO_4507 PF00384 Molybdopterin oxidoreductase GYO_4507 PF01568 Molydopterin dinucleotide binding domain GYO_4508 PF06107 Bacterial protein of unknown function (DUF951) GYO_4510 PF06866 Protein of unknown function (DUF1256) GYO_4511 PF02195 ParB-like nuclease domain GYO_4511 PF17762 HTH domain found in ParB protein GYO_4512 PF13614 AAA domain GYO_4513 PF06713 Bacterial PH domain GYO_4514 PF17762 HTH domain found in ParB protein GYO_4514 PF02195 ParB-like nuclease domain GYO_4515 PF02527 rRNA small subunit methyltransferase G GYO_4516 PF13932 GidA associated domain GYO_4516 PF01134 Glucose inhibited division protein A GYO_4517 PF01926 50S ribosome-binding GTPase GYO_4517 PF10396 GTP-binding protein TrmE N-terminus GYO_4517 PF12631 MnmE helical domain GYO_4518 PF14804 Jag N-terminus GYO_4518 PF01424 R3H domain GYO_4519 PF02096 60Kd inner membrane protein GYO_4520 PF00825 Ribonuclease P GYO_4551 PF00056 lactate/malate dehydrogenase, NAD binding domain GYO_4551 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain GYO_4553 PF13382 Adenine deaminase C-terminal domain GYO_4553 PF01979 Amidohydrolase family GYO_4554 PF00873 AcrB/AcrD/AcrF family GYO_4555 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain GYO_4556 PF05190 MutS family domain IV GYO_4556 PF05192 MutS domain III GYO_4556 PF05188 MutS domain II GYO_4556 PF01624 MutS domain I GYO_4556 PF00488 MutS domain V GYO_4557 PF08179 Small acid-soluble spore protein P family GYO_4558 PF00860 Permease family