GYO_0001 SM00382 ATPases associated with a variety of cellular activities GYO_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain GYO_0002 SM00480 DNA polymerase III beta subunit GYO_0006 SM00387 Histidine kinase-like ATPases GYO_0006 SM00433 TopoisomeraseII GYO_0008 SM00434 DNA Topoisomerase IV GYO_0013 SM00116 Domain in cystathionine beta-synthase and other proteins. GYO_0013 SM01240 GYO_0013 GYO_0014 SM00936 Penicillin-binding protein 5, C-terminal domain GYO_0024 SM00382 ATPases associated with a variety of cellular activities GYO_0026 SM00493 GYO_0026 GYO_0044 SM00465 GIY-YIG type nucleases (URI domain) GYO_0046 SM00966 SpoVT / AbrB like domain GYO_0049 SM01208 GYO_0049 GYO_0050 SM00493 GYO_0050 GYO_0051 SM00650 Ribosomal RNA adenine dimethylases GYO_0062 SM01400 GYO_0062 GYO_0066 SM00487 DEAD-like helicases superfamily GYO_0066 SM00490 helicase superfamily c-terminal domain GYO_0066 SM00982 GYO_0066 GYO_0066 SM01058 CarD-like/TRCF domain GYO_0067 SM00966 SpoVT / AbrB like domain GYO_0070 SM00363 S4 RNA-binding domain GYO_0074 SM00316 Ribosomal protein S1-like RNA-binding domain GYO_0079 SM00220 Serine/Threonine protein kinases, catalytic domain GYO_0080 SM00977 TilS substrate C-terminal domain GYO_0082 SM00382 ATPases associated with a variety of cellular activities GYO_0092 SM00905 Dihydroneopterin aldolase GYO_0094 SM00530 Helix-turn-helix XRE-family like proteins GYO_0112 SM00382 ATPases associated with a variety of cellular activities GYO_0112 SM01086 C-terminal, D2-small domain, of ClpB protein GYO_0113 SM00382 ATPases associated with a variety of cellular activities GYO_0115 SM00670 Large family of predicted nucleotide-binding domains GYO_0122 SM00840 GYO_0122 GYO_0123 SM00535 Ribonuclease III family GYO_0124 SM00967 RNA 2'-O ribose methyltransferase substrate binding GYO_0128 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. GYO_0128 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. GYO_0129 SM00649 Ribosomal protein L11/L12 GYO_0135 SM00663 RNA polymerase I subunit A N-terminus GYO_0139 SM00838 Elongation factor G C-terminus GYO_0139 SM00889 Elongation factor G, domain IV GYO_0142 SM01403 GYO_0142 GYO_0146 SM01382 GYO_0146 GYO_0146 SM01383 GYO_0146 GYO_0148 SM00322 K homology RNA-binding domain GYO_0152 SM01374 GYO_0152 GYO_0153 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. GYO_0168 SM00662 RNA polymerases D GYO_0170 SM00382 ATPases associated with a variety of cellular activities GYO_0180 SM00646 GYO_0180 GYO_0183 SM01251 GYO_0183 GYO_0193 SM00530 Helix-turn-helix XRE-family like proteins GYO_0219 SM00470 ParB-like nuclease domain GYO_0240 SM00257 Lysin motif GYO_0252 SM00257 Lysin motif GYO_0252 SM00644 GYO_0252 GYO_0255 SM00028 Tetratricopeptide repeats GYO_0272 SM00530 Helix-turn-helix XRE-family like proteins GYO_0298 SM00470 ParB-like nuclease domain GYO_0319 SM00257 Lysin motif GYO_0331 SM00257 Lysin motif GYO_0331 SM00644 GYO_0331 GYO_0334 SM00028 Tetratricopeptide repeats GYO_0348 SM00829 Enoylreductase GYO_0355 SM00342 helix_turn_helix, arabinose operon control protein GYO_0382 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor GYO_0386 SM00422 helix_turn_helix, mercury resistance GYO_0386 SM00871 Bacterial transcription activator, effector binding domain GYO_0388 SM00448 cheY-homologous receiver domain GYO_0388 SM00862 Transcriptional regulatory protein, C terminal GYO_0389 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GYO_0389 SM00387 Histidine kinase-like ATPases GYO_0389 SM00388 His Kinase A (phosphoacceptor) domain GYO_0407 SM00347 helix_turn_helix multiple antibiotic resistance protein GYO_0413 SM00342 helix_turn_helix, arabinose operon control protein GYO_0431 SM00450 Rhodanese Homology Domain GYO_0435 SM00345 helix_turn_helix gluconate operon transcriptional repressor GYO_0435 SM00866 GYO_0435 GYO_0443 SM00448 cheY-homologous receiver domain GYO_0445 SM01130 GYO_0445 GYO_0448 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain GYO_0449 SM00345 helix_turn_helix gluconate operon transcriptional repressor GYO_0449 SM00895 GYO_0449 GYO_0450 SM00858 GYO_0450 GYO_0454 SM00448 cheY-homologous receiver domain GYO_0454 SM00862 Transcriptional regulatory protein, C terminal GYO_0455 SM00387 Histidine kinase-like ATPases GYO_0455 SM00388 His Kinase A (phosphoacceptor) domain GYO_0456 SM00382 ATPases associated with a variety of cellular activities GYO_0459 SM00093 SERine Proteinase INhibitors GYO_0461 SM00327 von Willebrand factor (vWF) type A domain GYO_0470 SM00870 GYO_0470 GYO_0474 SM00387 Histidine kinase-like ATPases GYO_0475 SM00448 cheY-homologous receiver domain GYO_0475 SM00850 LytTr DNA-binding domain GYO_0476 SM00382 ATPases associated with a variety of cellular activities GYO_0484 SM00028 Tetratricopeptide repeats GYO_0486 SM00642 Alpha-amylase domain GYO_0489 SM00382 ATPases associated with a variety of cellular activities GYO_0501 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor GYO_0502 SM00116 Domain in cystathionine beta-synthase and other proteins. GYO_0502 SM00382 ATPases associated with a variety of cellular activities GYO_0508 SM00632 GYO_0508 GYO_0508 SM00642 Alpha-amylase domain GYO_0512 SM00347 helix_turn_helix multiple antibiotic resistance protein GYO_0538 SM00926 Molybdopterin oxidoreductase Fe4S4 domain GYO_0544 SM00833 Cobalamin synthesis protein cobW C-terminal domain GYO_0546 SM00062 Bacterial periplasmic substrate-binding proteins GYO_0551 SM00347 helix_turn_helix multiple antibiotic resistance protein GYO_0553 SM00382 ATPases associated with a variety of cellular activities GYO_0557 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). GYO_0557 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GYO_0559 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family GYO_0563 SM00823 Phosphopantetheine attachment site GYO_0563 SM01294 GYO_0563 GYO_0564 SM00823 Phosphopantetheine attachment site GYO_0569 SM00345 helix_turn_helix gluconate operon transcriptional repressor GYO_0573 SM00028 Tetratricopeptide repeats GYO_0574 SM00382 ATPases associated with a variety of cellular activities GYO_0576 SM00062 Bacterial periplasmic substrate-binding proteins GYO_0584 SM00710 Parallel beta-helix repeats GYO_0584 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses GYO_0589 SM00382 ATPases associated with a variety of cellular activities GYO_0591 SM00448 cheY-homologous receiver domain GYO_0591 SM00862 Transcriptional regulatory protein, C terminal GYO_0592 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GYO_0592 SM00387 Histidine kinase-like ATPases GYO_0592 SM00388 His Kinase A (phosphoacceptor) domain GYO_0593 SM00028 Tetratricopeptide repeats GYO_0598 SM00382 ATPases associated with a variety of cellular activities GYO_0604 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor GYO_0605 SM00345 helix_turn_helix gluconate operon transcriptional repressor GYO_0613 SM00420 helix_turn_helix, Deoxyribose operon repressor GYO_0618 SM01329 GYO_0618 GYO_0626 SM00796 Allophanate hydrolase subunit 1 GYO_0627 SM00797 Allophanate hydrolase subunit 2 GYO_0628 SM00346 helix_turn_helix isocitrate lyase regulation GYO_0643 SM00344 helix_turn_helix ASNC type GYO_0644 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain GYO_0644 SM00437 Bacterial DNA topoisomerase I DNA-binding domain GYO_0644 SM00493 GYO_0644 GYO_0646 SM00267 diguanylate cyclase GYO_0664 SM00091 PAS domain GYO_0664 SM00387 Histidine kinase-like ATPases GYO_0665 SM00448 cheY-homologous receiver domain GYO_0669 SM00382 ATPases associated with a variety of cellular activities GYO_0679 SM00487 DEAD-like helicases superfamily GYO_0679 SM00490 helicase superfamily c-terminal domain GYO_0685 SM01005 Alanine racemase, C-terminal domain GYO_0690 SM00387 Histidine kinase-like ATPases GYO_0691 SM00331 Sigma factor PP2C-like phosphatases GYO_0695 SM00331 Sigma factor PP2C-like phosphatases GYO_0695 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain GYO_0696 SM00316 Ribosomal protein S1-like RNA-binding domain GYO_0696 SM00732 Likely ribonuclease with RNase H fold. GYO_0698 SM00731 SprT homologues. GYO_0715 SM00344 helix_turn_helix ASNC type GYO_0718 SM00829 Enoylreductase GYO_0720 SM00344 helix_turn_helix ASNC type GYO_0723 SM01130 GYO_0723 GYO_0732 SM00357 Cold shock protein domain GYO_0733 SM01058 CarD-like/TRCF domain GYO_0737 SM00345 helix_turn_helix gluconate operon transcriptional repressor GYO_0737 SM00895 GYO_0737 GYO_0739 SM00530 Helix-turn-helix XRE-family like proteins GYO_0740 SM00342 helix_turn_helix, arabinose operon control protein GYO_0740 SM00871 Bacterial transcription activator, effector binding domain GYO_0751 SM00344 helix_turn_helix ASNC type GYO_0753 SM00345 helix_turn_helix gluconate operon transcriptional repressor GYO_0760 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor GYO_0762 SM00226 Low molecular weight phosphatase family GYO_0767 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GYO_0767 SM00387 Histidine kinase-like ATPases GYO_0767 SM00388 His Kinase A (phosphoacceptor) domain GYO_0768 SM00448 cheY-homologous receiver domain GYO_0768 SM00862 Transcriptional regulatory protein, C terminal GYO_0770 SM00345 helix_turn_helix gluconate operon transcriptional repressor GYO_0772 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor GYO_0776 SM00387 Histidine kinase-like ATPases GYO_0777 SM00421 helix_turn_helix, Lux Regulon GYO_0777 SM00448 cheY-homologous receiver domain GYO_0785 SM00422 helix_turn_helix, mercury resistance GYO_0785 SM00871 Bacterial transcription activator, effector binding domain GYO_0808 SM00354 helix_turn _helix lactose operon repressor GYO_0813 SM00382 ATPases associated with a variety of cellular activities GYO_0816 SM00347 helix_turn_helix multiple antibiotic resistance protein GYO_0819 SM00347 helix_turn_helix multiple antibiotic resistance protein GYO_0819 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor GYO_0820 SM00530 Helix-turn-helix XRE-family like proteins GYO_0829 SM00257 Lysin motif GYO_0829 SM00636 GYO_0829 GYO_0832 SM00098 Alkaline phosphatase homologues GYO_0836 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. GYO_0843 SM00345 helix_turn_helix gluconate operon transcriptional repressor GYO_0843 SM00866 GYO_0843 GYO_0859 SM00382 ATPases associated with a variety of cellular activities GYO_0861 SM00881 CoA binding domain GYO_0866 SM00883 Chaperonin 10 Kd subunit GYO_0870 SM00028 Tetratricopeptide repeats GYO_0870 SM00382 ATPases associated with a variety of cellular activities GYO_0871 SM00829 Enoylreductase GYO_0880 SM00829 Enoylreductase GYO_0894 SM00460 Transglutaminase/protease-like homologues GYO_0902 SM01001 AIR carboxylase GYO_0904 SM00998 Adenylosuccinate lyase C-terminus GYO_0907 SM01211 GYO_0907 GYO_0912 SM00798 AICARFT/IMPCHase bienzyme GYO_0912 SM00851 MGS-like domain GYO_0913 SM01209 GYO_0913 GYO_0913 SM01210 GYO_0913 GYO_0914 SM00344 helix_turn_helix ASNC type GYO_0924 SM00278 Helix-hairpin-helix DNA-binding motif class 1 GYO_0924 SM00292 breast cancer carboxy-terminal domain GYO_0924 SM00532 Ligase N family GYO_0932 SM00845 GatB domain GYO_0935 SM00046 Diacylglycerol kinase catalytic domain (presumed) GYO_0955 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GYO_0955 SM00387 Histidine kinase-like ATPases GYO_0956 SM00342 helix_turn_helix, arabinose operon control protein GYO_0956 SM00448 cheY-homologous receiver domain GYO_0961 SM00342 helix_turn_helix, arabinose operon control protein GYO_0982 SM00347 helix_turn_helix multiple antibiotic resistance protein GYO_1000 SM00382 ATPases associated with a variety of cellular activities GYO_1002 SM00422 helix_turn_helix, mercury resistance GYO_1007 SM00382 ATPases associated with a variety of cellular activities GYO_1008 SM00487 DEAD-like helicases superfamily GYO_1008 SM00490 helicase superfamily c-terminal domain GYO_1010 SM00829 Enoylreductase GYO_1014 SM00382 ATPases associated with a variety of cellular activities GYO_1020 SM00656 GYO_1020 GYO_1023 SM00387 Histidine kinase-like ATPases GYO_1024 SM00448 cheY-homologous receiver domain GYO_1028 SM00849 Metallo-beta-lactamase superfamily GYO_1046 SM00642 Alpha-amylase domain GYO_1047 SM00345 helix_turn_helix gluconate operon transcriptional repressor GYO_1047 SM00866 GYO_1047 GYO_1055 SM00226 Low molecular weight phosphatase family GYO_1067 SM00478 endonuclease III GYO_1076 SM00861 Transketolase, pyrimidine binding domain GYO_1079 SM00382 ATPases associated with a variety of cellular activities GYO_1089 SM00382 ATPases associated with a variety of cellular activities GYO_1090 SM00382 ATPases associated with a variety of cellular activities GYO_1093 SM00342 helix_turn_helix, arabinose operon control protein GYO_1097 SM00387 Histidine kinase-like ATPases GYO_1098 SM00421 helix_turn_helix, Lux Regulon GYO_1098 SM00448 cheY-homologous receiver domain GYO_1100 SM00382 ATPases associated with a variety of cellular activities GYO_1110 SM00347 helix_turn_helix multiple antibiotic resistance protein GYO_1125 SM00287 Bacterial SH3 domain homologues GYO_1131 SM00478 endonuclease III GYO_1131 SM00525 GYO_1131 GYO_1137 SM00382 ATPases associated with a variety of cellular activities GYO_1168 SM01060 GYO_1168 GYO_1169 SM00382 ATPases associated with a variety of cellular activities GYO_1170 SM00062 Bacterial periplasmic substrate-binding proteins GYO_1176 SM00530 Helix-turn-helix XRE-family like proteins GYO_1179 SM00567 E-Z type HEAT repeats GYO_1186 SM00763 PrkA AAA domain GYO_1188 SM00347 helix_turn_helix multiple antibiotic resistance protein GYO_1194 SM00345 helix_turn_helix gluconate operon transcriptional repressor GYO_1195 SM00382 ATPases associated with a variety of cellular activities GYO_1196 SM00382 ATPases associated with a variety of cellular activities GYO_1198 SM00357 Cold shock protein domain GYO_1200 SM00267 diguanylate cyclase GYO_1206 SM00318 Staphylococcal nuclease homologues GYO_1208 SM00363 S4 RNA-binding domain GYO_1210 SM00116 Domain in cystathionine beta-synthase and other proteins. GYO_1220 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. GYO_1220 SM00387 Histidine kinase-like ATPases GYO_1221 SM00421 helix_turn_helix, Lux Regulon GYO_1221 SM00448 cheY-homologous receiver domain GYO_1225 SM00257 Lysin motif GYO_1229 SM00098 Alkaline phosphatase homologues GYO_1230 SM00257 Lysin motif GYO_1237 SM00345 helix_turn_helix gluconate operon transcriptional repressor GYO_1243 SM00563 Phosphate acyltransferases GYO_1246 SM01091 Transporter associated domain GYO_1247 SM00422 helix_turn_helix, mercury resistance GYO_1250 SM01091 Transporter associated domain GYO_1262 SM00382 ATPases associated with a variety of cellular activities GYO_1263 SM00382 ATPases associated with a variety of cellular activities GYO_1275 SM00729 Elongator protein 3, MiaB family, Radical SAM GYO_1281 SM00382 ATPases associated with a variety of cellular activities GYO_1285 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. GYO_1292 SM00347 helix_turn_helix multiple antibiotic resistance protein GYO_1298 SM00382 ATPases associated with a variety of cellular activities GYO_1319 SM01022 GYO_1319 GYO_1322 SM00849 Metallo-beta-lactamase superfamily GYO_1333 SM00829 Enoylreductase GYO_1336 SM00855 Phosphoglycerate mutase family GYO_1340 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). GYO_1343 SM00914 GYO_1343 GYO_1347 SM00894 Excalibur calcium-binding domain GYO_1354 SM00347 helix_turn_helix multiple antibiotic resistance protein GYO_1360 SM00354 helix_turn _helix lactose operon repressor GYO_1389 SM00342 helix_turn_helix, arabinose operon control protein GYO_1390 SM00354 helix_turn _helix lactose operon repressor GYO_1394 SM00345 helix_turn_helix gluconate operon transcriptional repressor GYO_1403 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain GYO_1409 SM00316 Ribosomal protein S1-like RNA-binding domain GYO_1423 SM00859 Semialdehyde dehydrogenase, NAD binding domain GYO_1427 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain GYO_1428 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain GYO_1438 SM00825 Beta-ketoacyl synthase GYO_1440 SM00382 ATPases associated with a variety of cellular activities GYO_1441 SM00382 ATPases associated with a variety of cellular activities GYO_1450 SM00382 ATPases associated with a variety of cellular activities GYO_1451 SM00382 ATPases associated with a variety of cellular activities GYO_1463 SM01118 GYO_1463 GYO_1465 SM00954 Region found in RelA / SpoT proteins GYO_1501 SM00028 Tetratricopeptide repeats GYO_1523 SM00926 Molybdopterin oxidoreductase Fe4S4 domain GYO_1523 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region GYO_1533 SM00382 ATPases associated with a variety of cellular activities GYO_1535 SM00835 Cupin GYO_1542 SM00829 Enoylreductase GYO_1546 SM00354 helix_turn _helix lactose operon repressor GYO_1548 SM00858 GYO_1548 GYO_1551 SM00382 ATPases associated with a variety of cellular activities GYO_1552 SM00028 Tetratricopeptide repeats GYO_1556 SM00257 Lysin motif GYO_1556 SM00644 GYO_1556 GYO_1561 SM00530 Helix-turn-helix XRE-family like proteins GYO_1564 SM00382 ATPases associated with a variety of cellular activities GYO_1584 SM00257 Lysin motif GYO_1597 SM00257 Lysin motif GYO_1597 SM00644 GYO_1597 GYO_1609 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. GYO_1614 SM00382 ATPases associated with a variety of cellular activities GYO_1617 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain GYO_1619 SM00382 ATPases associated with a variety of cellular activities GYO_1631 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase GYO_1634 SM00347 helix_turn_helix multiple antibiotic resistance protein GYO_1636 SM00028 Tetratricopeptide repeats GYO_1638 SM00855 Phosphoglycerate mutase family GYO_1645 SM00382 ATPases associated with a variety of cellular activities GYO_1648 SM00448 cheY-homologous receiver domain GYO_1648 SM00862 Transcriptional regulatory protein, C terminal GYO_1654 SM00116 Domain in cystathionine beta-synthase and other proteins. GYO_1654 SM00924 MgtE intracellular N domain GYO_1655 SM00422 helix_turn_helix, mercury resistance GYO_1658 SM00347 helix_turn_helix multiple antibiotic resistance protein GYO_1665 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen GYO_1666 SM00052 Putative diguanylate phosphodiesterase GYO_1666 SM00267 diguanylate cyclase GYO_1679 SM00091 PAS domain GYO_1679 SM00387 Histidine kinase-like ATPases GYO_1679 SM00388 His Kinase A (phosphoacceptor) domain GYO_1688 SM01007 Class II Aldolase and Adducin N-terminal domain GYO_1694 SM00387 Histidine kinase-like ATPases GYO_1694 SM00388 His Kinase A (phosphoacceptor) domain GYO_1695 SM00347 helix_turn_helix multiple antibiotic resistance protein GYO_1698 SM00382 ATPases associated with a variety of cellular activities GYO_1698 SM01086 C-terminal, D2-small domain, of ClpB protein GYO_1707 SM00257 Lysin motif GYO_1708 SM00636 GYO_1708 GYO_1721 SM00354 helix_turn _helix lactose operon repressor GYO_1722 SM01061 CAT RNA binding domain GYO_1729 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). GYO_1729 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GYO_1733 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) GYO_1733 SM00091 PAS domain GYO_1733 SM00387 Histidine kinase-like ATPases GYO_1733 SM00388 His Kinase A (phosphoacceptor) domain GYO_1737 SM00260 Two component signalling adaptor domain GYO_1737 SM00448 cheY-homologous receiver domain GYO_1740 SM00257 Lysin motif GYO_1743 SM00052 Putative diguanylate phosphodiesterase GYO_1764 SM00852 Probable molybdopterin binding domain GYO_1768 SM00382 ATPases associated with a variety of cellular activities GYO_1769 SM00382 ATPases associated with a variety of cellular activities GYO_1772 SM00382 ATPases associated with a variety of cellular activities GYO_1773 SM01066 Carbohydrate binding domain GYO_1774 SM00420 helix_turn_helix, Deoxyribose operon repressor GYO_1774 SM01134 GYO_1774 GYO_1779 SM00382 ATPases associated with a variety of cellular activities GYO_1784 SM00966 SpoVT / AbrB like domain GYO_1785 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) GYO_1785 SM00091 PAS domain GYO_1785 SM00387 Histidine kinase-like ATPases GYO_1785 SM00388 His Kinase A (phosphoacceptor) domain GYO_1789 SM00849 Metallo-beta-lactamase superfamily GYO_1798 SM00861 Transketolase, pyrimidine binding domain GYO_1819 SM00838 Elongation factor G C-terminus GYO_1823 SM00670 Large family of predicted nucleotide-binding domains GYO_1828 SM00878 Biotin carboxylase C-terminal domain GYO_1839 SM00116 Domain in cystathionine beta-synthase and other proteins. GYO_1850 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. GYO_1862 SM00740 GYO_1862 GYO_1863 SM00740 GYO_1863 GYO_1874 SM00842 Cell division protein FtsA GYO_1875 SM00864 Tubulin/FtsZ family, GTPase domain GYO_1875 SM00865 Tubulin/FtsZ family, C-terminal domain GYO_1881 SM00382 ATPases associated with a variety of cellular activities GYO_1889 SM00363 S4 RNA-binding domain GYO_1895 SM00363 S4 RNA-binding domain GYO_1900 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain GYO_1901 SM00851 MGS-like domain GYO_1901 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain GYO_1901 SM01209 GYO_1901 GYO_1904 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family GYO_1914 SM00831 Cation transporter/ATPase, N-terminus GYO_1917 SM00072 Guanylate kinase homologues. GYO_1918 SM01409 GYO_1918 GYO_1921 SM00487 DEAD-like helicases superfamily GYO_1921 SM00490 helicase superfamily c-terminal domain GYO_1927 SM00331 Sigma factor PP2C-like phosphatases GYO_1927 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain GYO_1928 SM00220 Serine/Threonine protein kinases, catalytic domain GYO_1928 SM00740 GYO_1928 GYO_1931 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain GYO_1934 SM01120 GYO_1934 GYO_1934 SM01121 GYO_1934 GYO_1937 SM00487 DEAD-like helicases superfamily GYO_1937 SM00490 helicase superfamily c-terminal domain GYO_1940 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. GYO_1941 SM00822 GYO_1941 GYO_1943 SM00358 Double-stranded RNA binding motif GYO_1943 SM00535 Ribonuclease III family GYO_1944 SM00968 SMC proteins Flexible Hinge Domain GYO_1945 SM00382 ATPases associated with a variety of cellular activities GYO_1945 SM00962 SRP54-type protein, GTPase domain GYO_1945 SM00963 SRP54-type protein, helical bundle domain GYO_1948 SM00382 ATPases associated with a variety of cellular activities GYO_1948 SM00962 SRP54-type protein, GTPase domain GYO_1948 SM00963 SRP54-type protein, helical bundle domain GYO_1962 SM00881 CoA binding domain GYO_1966 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain GYO_1966 SM00437 Bacterial DNA topoisomerase I DNA-binding domain GYO_1966 SM00493 GYO_1966 GYO_1970 SM00382 ATPases associated with a variety of cellular activities GYO_1970 SM01086 C-terminal, D2-small domain, of ClpB protein GYO_1978 SM00382 ATPases associated with a variety of cellular activities GYO_1988 SM00448 cheY-homologous receiver domain GYO_1995 SM00962 SRP54-type protein, GTPase domain GYO_1997 SM00448 cheY-homologous receiver domain GYO_1998 SM00073 Histidine Phosphotransfer domain GYO_1998 SM00260 Two component signalling adaptor domain GYO_1998 SM00387 Histidine kinase-like ATPases GYO_1998 SM01231 GYO_1998 GYO_1999 SM00260 Two component signalling adaptor domain GYO_2011 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. GYO_2013 SM00479 GYO_2013 GYO_2013 SM00481 DNA polymerase alpha chain like domain GYO_2015 SM00316 Ribosomal protein S1-like RNA-binding domain GYO_2015 SM00322 K homology RNA-binding domain GYO_2024 SM00904 Riboflavin kinase GYO_2025 SM00316 Ribosomal protein S1-like RNA-binding domain GYO_2025 SM00322 K homology RNA-binding domain GYO_2031 SM00859 Semialdehyde dehydrogenase, NAD binding domain GYO_2033 SM01130 GYO_2033 GYO_2034 SM00849 Metallo-beta-lactamase superfamily GYO_2037 SM00382 ATPases associated with a variety of cellular activities GYO_2037 SM00843 GYO_2037 GYO_2038 SM00345 helix_turn_helix gluconate operon transcriptional repressor GYO_2038 SM00866 GYO_2038 GYO_2047 SM00852 Probable molybdopterin binding domain GYO_2048 SM00382 ATPases associated with a variety of cellular activities GYO_2050 SM00322 K homology RNA-binding domain GYO_2050 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. GYO_2054 SM00829 Enoylreductase GYO_2056 SM00729 Elongator protein 3, MiaB family, Radical SAM GYO_2060 SM00853 MutL C terminal dimerisation domain GYO_2060 SM01340 GYO_2060 GYO_2064 SM00849 Metallo-beta-lactamase superfamily GYO_2065 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. GYO_2066 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. GYO_2067 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. GYO_2069 SM00825 Beta-ketoacyl synthase GYO_2073 SM00822 GYO_2073 GYO_2073 SM00823 Phosphopantetheine attachment site GYO_2073 SM00825 Beta-ketoacyl synthase GYO_2073 SM00826 GYO_2073 GYO_2073 SM01294 GYO_2073 GYO_2074 SM00822 GYO_2074 GYO_2074 SM00823 Phosphopantetheine attachment site GYO_2074 SM00825 Beta-ketoacyl synthase GYO_2074 SM00826 GYO_2074 GYO_2074 SM01294 GYO_2074 GYO_2075 SM00822 GYO_2075 GYO_2075 SM00823 Phosphopantetheine attachment site GYO_2075 SM00825 Beta-ketoacyl synthase GYO_2075 SM00826 GYO_2075 GYO_2075 SM01294 GYO_2075 GYO_2076 SM00822 GYO_2076 GYO_2076 SM00823 Phosphopantetheine attachment site GYO_2076 SM00825 Beta-ketoacyl synthase GYO_2076 SM00826 GYO_2076 GYO_2076 SM01294 GYO_2076 GYO_2077 SM00823 Phosphopantetheine attachment site GYO_2077 SM00825 Beta-ketoacyl synthase GYO_2077 SM01294 GYO_2077 GYO_2080 SM00849 Metallo-beta-lactamase superfamily GYO_2100 SM00646 GYO_2100 GYO_2102 SM00382 ATPases associated with a variety of cellular activities GYO_2105 SM00422 helix_turn_helix, mercury resistance GYO_2106 SM01230 GYO_2106 GYO_2107 SM00860 SMI1 / KNR4 family GYO_2117 SM00318 Staphylococcal nuclease homologues GYO_2120 SM01005 Alanine racemase, C-terminal domain GYO_2153 SM00257 Lysin motif GYO_2154 SM00857 Resolvase, N terminal domain GYO_2156 SM00861 Transketolase, pyrimidine binding domain GYO_2162 SM00448 cheY-homologous receiver domain GYO_2176 SM01207 GYO_2176 GYO_2177 SM00881 CoA binding domain GYO_2178 SM00387 Histidine kinase-like ATPases GYO_2178 SM00433 TopoisomeraseII GYO_2179 SM00434 DNA Topoisomerase IV GYO_2183 SM01067 Cellulose binding domain GYO_2193 SM00878 Biotin carboxylase C-terminal domain GYO_2200 SM00824 Thioesterase GYO_2201 SM00823 Phosphopantetheine attachment site GYO_2202 SM00823 Phosphopantetheine attachment site GYO_2202 SM00825 Beta-ketoacyl synthase GYO_2203 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. GYO_2214 SM00829 Enoylreductase GYO_2218 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase GYO_2223 SM00822 GYO_2223 GYO_2230 SM00382 ATPases associated with a variety of cellular activities GYO_2231 SM00347 helix_turn_helix multiple antibiotic resistance protein GYO_2235 SM00926 Molybdopterin oxidoreductase Fe4S4 domain GYO_2241 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). GYO_2241 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GYO_2245 SM00656 GYO_2245 GYO_2251 SM00835 Cupin GYO_2258 SM00530 Helix-turn-helix XRE-family like proteins GYO_2269 SM00860 SMI1 / KNR4 family GYO_2288 SM00345 helix_turn_helix gluconate operon transcriptional repressor GYO_2294 SM01266 GYO_2294 GYO_2299 SM00860 SMI1 / KNR4 family GYO_2303 SM00342 helix_turn_helix, arabinose operon control protein GYO_2307 SM00849 Metallo-beta-lactamase superfamily GYO_2308 SM00871 Bacterial transcription activator, effector binding domain GYO_2311 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor GYO_2321 SM00421 helix_turn_helix, Lux Regulon GYO_2321 SM00448 cheY-homologous receiver domain GYO_2325 SM00257 Lysin motif GYO_2326 SM00341 Helicase and RNase D C-terminal GYO_2326 SM00487 DEAD-like helicases superfamily GYO_2326 SM00490 helicase superfamily c-terminal domain GYO_2326 SM00956 GYO_2326 GYO_2339 SM00861 Transketolase, pyrimidine binding domain GYO_2340 SM00327 von Willebrand factor (vWF) type A domain GYO_2341 SM00382 ATPases associated with a variety of cellular activities GYO_2343 SM00257 Lysin motif GYO_2364 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. GYO_2364 SM00245 tail specific protease GYO_2371 SM00014 Acid phosphatase homologues GYO_2380 SM00882 Coenzyme A transferase GYO_2381 SM00882 Coenzyme A transferase GYO_2393 SM00347 helix_turn_helix multiple antibiotic resistance protein GYO_2411 SM00567 E-Z type HEAT repeats GYO_2411 SM00932 Scaffold protein Nfu/NifU N terminal GYO_2412 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. GYO_2417 SM00357 Cold shock protein domain GYO_2425 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs GYO_2425 SM00475 5'-3' exonuclease GYO_2437 SM00354 helix_turn _helix lactose operon repressor GYO_2441 SM00491 GYO_2441 GYO_2443 SM00981 GYO_2443 GYO_2448 SM00487 DEAD-like helicases superfamily GYO_2448 SM00490 helicase superfamily c-terminal domain GYO_2460 SM00478 endonuclease III GYO_2460 SM00525 GYO_2460 GYO_2466 SM00479 GYO_2466 GYO_2466 SM00487 DEAD-like helicases superfamily GYO_2466 SM00491 GYO_2466 GYO_2475 SM00851 MGS-like domain GYO_2485 SM00914 GYO_2485 GYO_2486 SM00028 Tetratricopeptide repeats GYO_2499 SM00138 Methyltransferase, chemotaxis proteins GYO_2501 SM00562 GYO_2501 GYO_2507 SM00411 bacterial (prokaryotic) histone like domain GYO_2518 SM01240 GYO_2518 GYO_2519 SM00316 Ribosomal protein S1-like RNA-binding domain GYO_2528 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GYO_2532 SM00257 Lysin motif GYO_2534 SM00487 DEAD-like helicases superfamily GYO_2534 SM00490 helicase superfamily c-terminal domain GYO_2543 SM00091 PAS domain GYO_2543 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GYO_2543 SM00387 Histidine kinase-like ATPases GYO_2543 SM00388 His Kinase A (phosphoacceptor) domain GYO_2544 SM00448 cheY-homologous receiver domain GYO_2544 SM00862 Transcriptional regulatory protein, C terminal GYO_2549 SM00363 S4 RNA-binding domain GYO_2552 SM00936 Penicillin-binding protein 5, C-terminal domain GYO_2580 SM00387 Histidine kinase-like ATPases GYO_2591 SM00919 Malic enzyme, NAD binding domain GYO_2591 SM01274 GYO_2591 GYO_2594 SM00870 GYO_2594 GYO_2595 SM00530 Helix-turn-helix XRE-family like proteins GYO_2604 SM00530 Helix-turn-helix XRE-family like proteins GYO_2622 SM00849 Metallo-beta-lactamase superfamily GYO_2631 SM01350 GYO_2631 GYO_2641 SM00382 ATPases associated with a variety of cellular activities GYO_2643 SM00062 Bacterial periplasmic substrate-binding proteins GYO_2643 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. GYO_2645 SM00046 Diacylglycerol kinase catalytic domain (presumed) GYO_2647 SM00422 helix_turn_helix, mercury resistance GYO_2649 SM00861 Transketolase, pyrimidine binding domain GYO_2653 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GYO_2655 SM00091 PAS domain GYO_2655 SM00382 ATPases associated with a variety of cellular activities GYO_2665 SM00646 GYO_2665 GYO_2673 SM00487 DEAD-like helicases superfamily GYO_2679 SM00448 cheY-homologous receiver domain GYO_2681 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. GYO_2685 SM00363 S4 RNA-binding domain GYO_2686 SM00861 Transketolase, pyrimidine binding domain GYO_2694 SM00878 Biotin carboxylase C-terminal domain GYO_2703 SM00382 ATPases associated with a variety of cellular activities GYO_2705 SM00841 Elongation factor P, C-terminal GYO_2705 SM01185 GYO_2705 GYO_2712 SM00529 Helix-turn-helix diphteria tox regulatory element GYO_2714 SM00450 Rhodanese Homology Domain GYO_2718 SM00487 DEAD-like helicases superfamily GYO_2718 SM00490 helicase superfamily c-terminal domain GYO_2721 SM00530 Helix-turn-helix XRE-family like proteins GYO_2735 SM00382 ATPases associated with a variety of cellular activities GYO_2736 SM00116 Domain in cystathionine beta-synthase and other proteins. GYO_2738 SM01091 Transporter associated domain GYO_2743 SM00849 Metallo-beta-lactamase superfamily GYO_2747 SM00631 GYO_2747 GYO_2752 SM00028 Tetratricopeptide repeats GYO_2760 SM00382 ATPases associated with a variety of cellular activities GYO_2761 SM00382 ATPases associated with a variety of cellular activities GYO_2770 SM00257 Lysin motif GYO_2777 SM00518 AP endonuclease family 2 GYO_2778 SM00487 DEAD-like helicases superfamily GYO_2778 SM00490 helicase superfamily c-terminal domain GYO_2786 SM00400 zinc finger GYO_2786 SM00493 GYO_2786 GYO_2789 SM00116 Domain in cystathionine beta-synthase and other proteins. GYO_2799 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. GYO_2811 SM00729 Elongator protein 3, MiaB family, Radical SAM GYO_2814 SM00271 DnaJ molecular chaperone homology domain GYO_2818 SM00729 Elongator protein 3, MiaB family, Radical SAM GYO_2819 SM00838 Elongation factor G C-terminus GYO_2827 SM00849 Metallo-beta-lactamase superfamily GYO_2829 SM00278 Helix-hairpin-helix DNA-binding motif class 1 GYO_2833 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. GYO_2835 SM01103 GYO_2835 GYO_2841 SM00644 GYO_2841 GYO_2843 SM01350 GYO_2843 GYO_2848 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain GYO_2849 SM01119 GYO_2849 GYO_2851 SM00870 GYO_2851 GYO_2855 SM00028 Tetratricopeptide repeats GYO_2860 SM00860 SMI1 / KNR4 family GYO_2868 SM00450 Rhodanese Homology Domain GYO_2868 SM00849 Metallo-beta-lactamase superfamily GYO_2870 SM00450 Rhodanese Homology Domain GYO_2871 SM00450 Rhodanese Homology Domain GYO_2875 SM00450 Rhodanese Homology Domain GYO_2875 SM00849 Metallo-beta-lactamase superfamily GYO_2877 SM00421 helix_turn_helix, Lux Regulon GYO_2877 SM00448 cheY-homologous receiver domain GYO_2878 SM00387 Histidine kinase-like ATPases GYO_2881 SM00849 Metallo-beta-lactamase superfamily GYO_2884 SM01061 CAT RNA binding domain GYO_2903 SM00422 helix_turn_helix, mercury resistance GYO_2911 SM00903 Flavin reductase like domain GYO_2913 SM00422 helix_turn_helix, mercury resistance GYO_2917 SM00014 Acid phosphatase homologues GYO_2924 SM00287 Bacterial SH3 domain homologues GYO_2931 SM00342 helix_turn_helix, arabinose operon control protein GYO_2933 SM00422 helix_turn_helix, mercury resistance GYO_2935 SM00829 Enoylreductase GYO_2937 SM00640 Glycosyl hydrolases family 32 GYO_2942 SM00382 ATPases associated with a variety of cellular activities GYO_2962 SM00926 Molybdopterin oxidoreductase Fe4S4 domain GYO_2962 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region GYO_2968 SM00650 Ribosomal RNA adenine dimethylases GYO_2980 SM00732 Likely ribonuclease with RNase H fold. GYO_2982 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain GYO_2987 SM00382 ATPases associated with a variety of cellular activities GYO_2988 SM00028 Tetratricopeptide repeats GYO_2992 SM00382 ATPases associated with a variety of cellular activities GYO_2998 SM00287 Bacterial SH3 domain homologues GYO_2998 SM00646 GYO_2998 GYO_3000 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. GYO_3000 SM00954 Region found in RelA / SpoT proteins GYO_3010 SM01323 GYO_3010 GYO_3014 SM00382 ATPases associated with a variety of cellular activities GYO_3015 SM00278 Helix-hairpin-helix DNA-binding motif class 1 GYO_3024 SM00257 Lysin motif GYO_3033 SM01317 GYO_3033 GYO_3055 SM00257 Lysin motif GYO_3057 SM01004 Delta-aminolevulinic acid dehydratase GYO_3064 SM00382 ATPases associated with a variety of cellular activities GYO_3064 SM00464 Found in ATP-dependent protease La (LON) GYO_3065 SM00382 ATPases associated with a variety of cellular activities GYO_3066 SM00382 ATPases associated with a variety of cellular activities GYO_3066 SM00994 ClpX C4-type zinc finger GYO_3066 SM01086 C-terminal, D2-small domain, of ClpB protein GYO_3072 SM01329 GYO_3072 GYO_3073 SM00917 LeuA allosteric (dimerisation) domain GYO_3084 SM00909 Sporulation and spore germination GYO_3086 SM00347 helix_turn_helix multiple antibiotic resistance protein GYO_3087 SM00421 helix_turn_helix, Lux Regulon GYO_3096 SM00465 GIY-YIG type nucleases (URI domain) GYO_3098 SM00813 Alpha-L-arabinofuranosidase C-terminus GYO_3099 SM00893 Electron transfer flavoprotein domain GYO_3100 SM00893 Electron transfer flavoprotein domain GYO_3105 SM00463 Small MutS-related domain GYO_3105 SM00533 DNA-binding domain of DNA mismatch repair MUTS family GYO_3105 SM00534 ATPase domain of DNA mismatch repair MUTS family GYO_3106 SM00278 Helix-hairpin-helix DNA-binding motif class 1 GYO_3106 SM00481 DNA polymerase alpha chain like domain GYO_3106 SM00483 DNA polymerase X family GYO_3110 SM00873 B3/4 domain GYO_3110 SM00874 tRNA synthetase B5 domain GYO_3110 SM00896 Ferredoxin-fold anticodon binding domain GYO_3112 SM00967 RNA 2'-O ribose methyltransferase substrate binding GYO_3122 SM00813 Alpha-L-arabinofuranosidase C-terminus GYO_3128 SM01007 Class II Aldolase and Adducin N-terminal domain GYO_3142 SM00448 cheY-homologous receiver domain GYO_3142 SM00850 LytTr DNA-binding domain GYO_3143 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. GYO_3143 SM00387 Histidine kinase-like ATPases GYO_3145 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain GYO_3148 SM00382 ATPases associated with a variety of cellular activities GYO_3152 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GYO_3158 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain GYO_3158 SM01232 GYO_3158 GYO_3159 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs GYO_3159 SM00474 3'-5' exonuclease GYO_3159 SM00475 5'-3' exonuclease GYO_3159 SM00482 DNA polymerase A domain GYO_3161 SM00091 PAS domain GYO_3161 SM00387 Histidine kinase-like ATPases GYO_3161 SM00388 His Kinase A (phosphoacceptor) domain GYO_3162 SM00448 cheY-homologous receiver domain GYO_3162 SM00862 Transcriptional regulatory protein, C terminal GYO_3165 SM01329 GYO_3165 GYO_3175 SM00919 Malic enzyme, NAD binding domain GYO_3175 SM01274 GYO_3175 GYO_3176 SM00481 DNA polymerase alpha chain like domain GYO_3183 SM00116 Domain in cystathionine beta-synthase and other proteins. GYO_3184 SM00849 Metallo-beta-lactamase superfamily GYO_3190 SM00852 Probable molybdopterin binding domain GYO_3204 SM00981 GYO_3204 GYO_3210 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. GYO_3211 SM00267 diguanylate cyclase GYO_3213 SM00363 S4 RNA-binding domain GYO_3213 SM01390 GYO_3213 GYO_3215 SM00363 S4 RNA-binding domain GYO_3218 SM00116 Domain in cystathionine beta-synthase and other proteins. GYO_3223 SM00830 Chorismate mutase type II GYO_3228 SM00382 ATPases associated with a variety of cellular activities GYO_3228 SM00843 GYO_3228 GYO_3236 SM00919 Malic enzyme, NAD binding domain GYO_3236 SM01274 GYO_3236 GYO_3237 SM00849 Metallo-beta-lactamase superfamily GYO_3241 SM00642 Alpha-amylase domain GYO_3242 SM00046 Diacylglycerol kinase catalytic domain (presumed) GYO_3249 SM00382 ATPases associated with a variety of cellular activities GYO_3250 SM00420 helix_turn_helix, Deoxyribose operon repressor GYO_3251 SM00363 S4 RNA-binding domain GYO_3262 SM00342 helix_turn_helix, arabinose operon control protein GYO_3268 SM00729 Elongator protein 3, MiaB family, Radical SAM GYO_3268 SM00876 Biotin and Thiamin Synthesis associated domain GYO_3275 SM00354 helix_turn _helix lactose operon repressor GYO_3282 SM00450 Rhodanese Homology Domain GYO_3285 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) GYO_3285 SM00091 PAS domain GYO_3289 SM00382 ATPases associated with a variety of cellular activities GYO_3290 SM00387 Histidine kinase-like ATPases GYO_3291 SM00448 cheY-homologous receiver domain GYO_3291 SM00862 Transcriptional regulatory protein, C terminal GYO_3293 SM00382 ATPases associated with a variety of cellular activities GYO_3296 SM00382 ATPases associated with a variety of cellular activities GYO_3297 SM00345 helix_turn_helix gluconate operon transcriptional repressor GYO_3300 SM00729 Elongator protein 3, MiaB family, Radical SAM GYO_3312 SM00382 ATPases associated with a variety of cellular activities GYO_3321 SM01234 GYO_3321 GYO_3322 SM00947 Carbonic anhydrase GYO_3330 SM00382 ATPases associated with a variety of cellular activities GYO_3332 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain GYO_3341 SM00984 UDP binding domain GYO_3353 SM00642 Alpha-amylase domain GYO_3379 SM00244 prohibitin homologues GYO_3390 SM00047 Lysozyme subfamily 2 GYO_3404 SM00420 helix_turn_helix, Deoxyribose operon repressor GYO_3404 SM01134 GYO_3404 GYO_3405 SM01007 Class II Aldolase and Adducin N-terminal domain GYO_3406 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). GYO_3406 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GYO_3406 SM00319 Homologues of the ligand binding domain of Tar GYO_3407 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). GYO_3407 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GYO_3407 SM00319 Homologues of the ligand binding domain of Tar GYO_3408 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). GYO_3408 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GYO_3408 SM00319 Homologues of the ligand binding domain of Tar GYO_3409 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). GYO_3409 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GYO_3409 SM00319 Homologues of the ligand binding domain of Tar GYO_3415 SM00642 Alpha-amylase domain GYO_3416 SM01091 Transporter associated domain GYO_3427 SM00316 Ribosomal protein S1-like RNA-binding domain GYO_3429 SM00344 helix_turn_helix ASNC type GYO_3433 SM00387 Histidine kinase-like ATPases GYO_3433 SM00388 His Kinase A (phosphoacceptor) domain GYO_3434 SM01298 GYO_3434 GYO_3435 SM00479 GYO_3435 GYO_3441 SM00091 PAS domain GYO_3441 SM00387 Histidine kinase-like ATPases GYO_3442 SM00448 cheY-homologous receiver domain GYO_3444 SM00382 ATPases associated with a variety of cellular activities GYO_3458 SM00421 helix_turn_helix, Lux Regulon GYO_3458 SM00448 cheY-homologous receiver domain GYO_3459 SM00387 Histidine kinase-like ATPases GYO_3465 SM00052 Putative diguanylate phosphodiesterase GYO_3474 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. GYO_3483 SM01002 Alanine dehydrogenase/PNT, C-terminal domain GYO_3483 SM01003 Alanine dehydrogenase/PNT, N-terminal domain GYO_3486 SM00923 MbtH-like protein GYO_3487 SM00823 Phosphopantetheine attachment site GYO_3487 SM00824 Thioesterase GYO_3505 SM01240 GYO_3505 GYO_3526 SM00729 Elongator protein 3, MiaB family, Radical SAM GYO_3546 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain GYO_3555 SM00382 ATPases associated with a variety of cellular activities GYO_3556 SM00345 helix_turn_helix gluconate operon transcriptional repressor GYO_3556 SM00866 GYO_3556 GYO_3562 SM00465 GIY-YIG type nucleases (URI domain) GYO_3571 SM00382 ATPases associated with a variety of cellular activities GYO_3576 SM00382 ATPases associated with a variety of cellular activities GYO_3576 SM00930 GYO_3576 GYO_3580 SM00493 GYO_3580 GYO_3591 SM00347 helix_turn_helix multiple antibiotic resistance protein GYO_3597 SM00382 ATPases associated with a variety of cellular activities GYO_3603 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. GYO_3605 SM00448 cheY-homologous receiver domain GYO_3605 SM00862 Transcriptional regulatory protein, C terminal GYO_3606 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GYO_3606 SM00387 Histidine kinase-like ATPases GYO_3606 SM00388 His Kinase A (phosphoacceptor) domain GYO_3614 SM00421 helix_turn_helix, Lux Regulon GYO_3614 SM00448 cheY-homologous receiver domain GYO_3615 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GYO_3615 SM00387 Histidine kinase-like ATPases GYO_3623 SM00382 ATPases associated with a variety of cellular activities GYO_3628 SM00387 Histidine kinase-like ATPases GYO_3628 SM00388 His Kinase A (phosphoacceptor) domain GYO_3629 SM00448 cheY-homologous receiver domain GYO_3629 SM00862 Transcriptional regulatory protein, C terminal GYO_3633 SM00835 Cupin GYO_3636 SM00382 ATPases associated with a variety of cellular activities GYO_3638 SM00382 ATPases associated with a variety of cellular activities GYO_3669 SM00345 helix_turn_helix gluconate operon transcriptional repressor GYO_3669 SM00895 GYO_3669 GYO_3678 SM00316 Ribosomal protein S1-like RNA-binding domain GYO_3678 SM00357 Cold shock protein domain GYO_3678 SM00955 GYO_3678 GYO_3682 SM00530 Helix-turn-helix XRE-family like proteins GYO_3683 SM00530 Helix-turn-helix XRE-family like proteins GYO_3684 SM00530 Helix-turn-helix XRE-family like proteins GYO_3686 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). GYO_3686 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GYO_3687 SM00387 Histidine kinase-like ATPases GYO_3687 SM00388 His Kinase A (phosphoacceptor) domain GYO_3688 SM00448 cheY-homologous receiver domain GYO_3688 SM00862 Transcriptional regulatory protein, C terminal GYO_3691 SM00382 ATPases associated with a variety of cellular activities GYO_3694 SM01260 GYO_3694 GYO_3695 SM00382 ATPases associated with a variety of cellular activities GYO_3700 SM00116 Domain in cystathionine beta-synthase and other proteins. GYO_3700 SM00382 ATPases associated with a variety of cellular activities GYO_3706 SM00116 Domain in cystathionine beta-synthase and other proteins. GYO_3706 SM00382 ATPases associated with a variety of cellular activities GYO_3713 SM01192 GYO_3713 GYO_3713 SM01193 GYO_3713 GYO_3718 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain GYO_3728 SM00636 GYO_3728 GYO_3738 SM00421 helix_turn_helix, Lux Regulon GYO_3738 SM00448 cheY-homologous receiver domain GYO_3741 SM00382 ATPases associated with a variety of cellular activities GYO_3743 SM00331 Sigma factor PP2C-like phosphatases GYO_3749 SM00354 helix_turn _helix lactose operon repressor GYO_3772 SM00530 Helix-turn-helix XRE-family like proteins GYO_3781 SM00640 Glycosyl hydrolases family 32 GYO_3790 SM00642 Alpha-amylase domain GYO_3796 SM00642 Alpha-amylase domain GYO_3797 SM00354 helix_turn _helix lactose operon repressor GYO_3801 SM00947 Carbonic anhydrase GYO_3804 SM00382 ATPases associated with a variety of cellular activities GYO_3805 SM00387 Histidine kinase-like ATPases GYO_3806 SM00448 cheY-homologous receiver domain GYO_3806 SM00862 Transcriptional regulatory protein, C terminal GYO_3817 SM00028 Tetratricopeptide repeats GYO_3818 SM00382 ATPases associated with a variety of cellular activities GYO_3840 SM00345 helix_turn_helix gluconate operon transcriptional repressor GYO_3840 SM00866 GYO_3840 GYO_3842 SM00347 helix_turn_helix multiple antibiotic resistance protein GYO_3846 SM00347 helix_turn_helix multiple antibiotic resistance protein GYO_3854 SM00382 ATPases associated with a variety of cellular activities GYO_3855 SM00487 DEAD-like helicases superfamily GYO_3855 SM00490 helicase superfamily c-terminal domain GYO_3862 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. GYO_3864 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. GYO_3864 SM00245 tail specific protease GYO_3866 SM00382 ATPases associated with a variety of cellular activities GYO_3871 SM00937 GYO_3871 GYO_3872 SM00957 SecA DEAD-like domain GYO_3872 SM00958 SecA preprotein cross-linking domain GYO_3891 SM00487 DEAD-like helicases superfamily GYO_3891 SM00490 helicase superfamily c-terminal domain GYO_3893 SM00421 helix_turn_helix, Lux Regulon GYO_3893 SM00448 cheY-homologous receiver domain GYO_3894 SM00387 Histidine kinase-like ATPases GYO_3903 SM00382 ATPases associated with a variety of cellular activities GYO_3910 SM00984 UDP binding domain GYO_3915 SM00646 GYO_3915 GYO_3924 SM00382 ATPases associated with a variety of cellular activities GYO_3937 SM00047 Lysozyme subfamily 2 GYO_3937 SM00287 Bacterial SH3 domain homologues GYO_3947 SM00854 Bacterial capsule synthesis protein PGA_cap GYO_3950 SM00354 helix_turn _helix lactose operon repressor GYO_3953 SM00382 ATPases associated with a variety of cellular activities GYO_3956 SM00287 Bacterial SH3 domain homologues GYO_3964 SM00903 Flavin reductase like domain GYO_3967 SM00344 helix_turn_helix ASNC type GYO_3974 SM00342 helix_turn_helix, arabinose operon control protein GYO_3984 SM00984 UDP binding domain GYO_3990 SM00487 DEAD-like helicases superfamily GYO_3990 SM00490 helicase superfamily c-terminal domain GYO_3993 SM00420 helix_turn_helix, Deoxyribose operon repressor GYO_3993 SM01134 GYO_3993 GYO_3999 SM00448 cheY-homologous receiver domain GYO_3999 SM00862 Transcriptional regulatory protein, C terminal GYO_4000 SM00387 Histidine kinase-like ATPases GYO_4000 SM00388 His Kinase A (phosphoacceptor) domain GYO_4000 SM00448 cheY-homologous receiver domain GYO_4003 SM00028 Tetratricopeptide repeats GYO_4008 SM00347 helix_turn_helix multiple antibiotic resistance protein GYO_4010 SM00710 Parallel beta-helix repeats GYO_4010 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses GYO_4016 SM00938 Nitrogen regulatory protein P-II GYO_4017 SM00014 Acid phosphatase homologues GYO_4024 SM00155 Phospholipase D. Active site motifs. GYO_4025 SM00422 helix_turn_helix, mercury resistance GYO_4032 SM00382 ATPases associated with a variety of cellular activities GYO_4033 SM00382 ATPases associated with a variety of cellular activities GYO_4039 SM00028 Tetratricopeptide repeats GYO_4041 SM00729 Elongator protein 3, MiaB family, Radical SAM GYO_4044 SM00327 von Willebrand factor (vWF) type A domain GYO_4046 SM00327 von Willebrand factor (vWF) type A domain GYO_4055 SM00382 ATPases associated with a variety of cellular activities GYO_4069 SM00226 Low molecular weight phosphatase family GYO_4077 SM00937 GYO_4077 GYO_4081 SM00919 Malic enzyme, NAD binding domain GYO_4081 SM01274 GYO_4081 GYO_4084 SM00357 Cold shock protein domain GYO_4084 SM00382 ATPases associated with a variety of cellular activities GYO_4084 SM00959 Rho termination factor, N-terminal domain GYO_4091 SM00448 cheY-homologous receiver domain GYO_4098 SM00155 Phospholipase D. Active site motifs. GYO_4102 SM00382 ATPases associated with a variety of cellular activities GYO_4103 SM00155 Phospholipase D. Active site motifs. GYO_4108 SM00926 Molybdopterin oxidoreductase Fe4S4 domain GYO_4112 SM00100 Cyclic nucleotide-monophosphate binding domain GYO_4112 SM00419 helix_turn_helix, cAMP Regulatory protein GYO_4114 SM00836 DALR anticodon binding domain GYO_4114 SM01016 Arginyl tRNA synthetase N terminal dom GYO_4117 SM00729 Elongator protein 3, MiaB family, Radical SAM GYO_4119 SM00382 ATPases associated with a variety of cellular activities GYO_4126 SM00028 Tetratricopeptide repeats GYO_4131 SM00382 ATPases associated with a variety of cellular activities GYO_4140 SM00347 helix_turn_helix multiple antibiotic resistance protein GYO_4141 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain GYO_4146 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. GYO_4166 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase GYO_4186 SM00986 Uracil DNA glycosylase superfamily GYO_4186 SM00987 UreE urease accessory protein, C-terminal domain GYO_4194 SM00640 Glycosyl hydrolases family 32 GYO_4197 SM01061 CAT RNA binding domain GYO_4232 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase GYO_4239 SM01061 CAT RNA binding domain GYO_4242 SM00347 helix_turn_helix multiple antibiotic resistance protein GYO_4243 SM00363 S4 RNA-binding domain GYO_4246 SM00954 Region found in RelA / SpoT proteins GYO_4264 SM01060 GYO_4264 GYO_4267 SM00382 ATPases associated with a variety of cellular activities GYO_4274 SM00382 ATPases associated with a variety of cellular activities GYO_4275 SM00382 ATPases associated with a variety of cellular activities GYO_4285 SM00382 ATPases associated with a variety of cellular activities GYO_4294 SM00421 helix_turn_helix, Lux Regulon GYO_4294 SM00448 cheY-homologous receiver domain GYO_4303 SM00882 Coenzyme A transferase GYO_4304 SM00882 Coenzyme A transferase GYO_4310 SM01060 GYO_4310 GYO_4317 SM01061 CAT RNA binding domain GYO_4321 SM00487 DEAD-like helicases superfamily GYO_4321 SM00490 helicase superfamily c-terminal domain GYO_4347 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain GYO_4349 SM01133 GYO_4349 GYO_4356 SM00382 ATPases associated with a variety of cellular activities GYO_4358 SM00062 Bacterial periplasmic substrate-binding proteins GYO_4371 SM00382 ATPases associated with a variety of cellular activities GYO_4372 SM00387 Histidine kinase-like ATPases GYO_4373 SM00448 cheY-homologous receiver domain GYO_4373 SM00862 Transcriptional regulatory protein, C terminal GYO_4384 SM00420 helix_turn_helix, Deoxyribose operon repressor GYO_4384 SM01134 GYO_4384 GYO_4389 SM00387 Histidine kinase-like ATPases GYO_4401 SM00347 helix_turn_helix multiple antibiotic resistance protein GYO_4408 SM00345 helix_turn_helix gluconate operon transcriptional repressor GYO_4408 SM00895 GYO_4408 GYO_4411 SM01350 GYO_4411 GYO_4420 SM00345 helix_turn_helix gluconate operon transcriptional repressor GYO_4420 SM00866 GYO_4420 GYO_4423 SM00382 ATPases associated with a variety of cellular activities GYO_4444 SM00091 PAS domain GYO_4444 SM00382 ATPases associated with a variety of cellular activities GYO_4445 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GYO_4445 SM00387 Histidine kinase-like ATPases GYO_4445 SM00388 His Kinase A (phosphoacceptor) domain GYO_4446 SM00448 cheY-homologous receiver domain GYO_4446 SM00862 Transcriptional regulatory protein, C terminal GYO_4449 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. GYO_4450 SM00849 Metallo-beta-lactamase superfamily GYO_4453 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) GYO_4453 SM00091 PAS domain GYO_4453 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain GYO_4453 SM00387 Histidine kinase-like ATPases GYO_4453 SM00388 His Kinase A (phosphoacceptor) domain GYO_4454 SM00448 cheY-homologous receiver domain GYO_4454 SM00862 Transcriptional regulatory protein, C terminal GYO_4459 SM00788 Adenylosuccinate synthetase GYO_4462 SM00382 ATPases associated with a variety of cellular activities GYO_4469 SM00267 diguanylate cyclase GYO_4474 SM01131 GYO_4474 GYO_4478 SM00422 helix_turn_helix, mercury resistance GYO_4487 SM00849 Metallo-beta-lactamase superfamily GYO_4490 SM00347 helix_turn_helix multiple antibiotic resistance protein GYO_4495 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor GYO_4499 SM01266 GYO_4499 GYO_4501 SM00354 helix_turn _helix lactose operon repressor GYO_4507 SM00926 Molybdopterin oxidoreductase Fe4S4 domain GYO_4511 SM00470 ParB-like nuclease domain GYO_4514 SM00470 ParB-like nuclease domain GYO_4516 SM01228 GYO_4516 GYO_4518 SM00393 Putative single-stranded nucleic acids-binding domain GYO_4518 SM01245 GYO_4518 GYO_4555 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). GYO_4556 SM00533 DNA-binding domain of DNA mismatch repair MUTS family GYO_4556 SM00534 ATPase domain of DNA mismatch repair MUTS family