BFI33_00005 SM00382 ATPases associated with a variety of cellular activities BFI33_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain BFI33_00010 SM00480 DNA polymerase III beta subunit BFI33_00030 SM00387 Histidine kinase-like ATPases BFI33_00030 SM00433 TopoisomeraseII BFI33_00035 SM00434 DNA Topoisomerase IV BFI33_00070 SM00116 Domain in cystathionine beta-synthase and other proteins. BFI33_00070 SM01240 BFI33_00070 BFI33_00075 SM00936 Penicillin-binding protein 5, C-terminal domain BFI33_00110 SM00257 Lysin motif BFI33_00110 SM00636 BFI33_00110 BFI33_00130 SM00382 ATPases associated with a variety of cellular activities BFI33_00140 SM00493 BFI33_00140 BFI33_00235 SM00465 GIY-YIG type nucleases (URI domain) BFI33_00245 SM00966 SpoVT / AbrB like domain BFI33_00260 SM01208 BFI33_00260 BFI33_00265 SM00493 BFI33_00265 BFI33_00270 SM00650 Ribosomal RNA adenine dimethylases BFI33_00320 SM01400 BFI33_00320 BFI33_00340 SM00487 DEAD-like helicases superfamily BFI33_00340 SM00490 helicase superfamily c-terminal domain BFI33_00340 SM00982 BFI33_00340 BFI33_00340 SM01058 CarD-like/TRCF domain BFI33_00345 SM00966 SpoVT / AbrB like domain BFI33_00360 SM00363 S4 RNA-binding domain BFI33_00380 SM00316 Ribosomal protein S1-like RNA-binding domain BFI33_00395 SM00331 Sigma factor PP2C-like phosphatases BFI33_00395 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BFI33_00405 SM00220 Serine/Threonine protein kinases, catalytic domain BFI33_00410 SM00977 TilS substrate C-terminal domain BFI33_00420 SM00382 ATPases associated with a variety of cellular activities BFI33_00465 SM00905 Dihydroneopterin aldolase BFI33_00475 SM00530 Helix-turn-helix XRE-family like proteins BFI33_00585 SM00382 ATPases associated with a variety of cellular activities BFI33_00585 SM01086 C-terminal, D2-small domain, of ClpB protein BFI33_00590 SM00382 ATPases associated with a variety of cellular activities BFI33_00600 SM00670 Large family of predicted nucleotide-binding domains BFI33_00630 SM00840 BFI33_00630 BFI33_00635 SM00535 Ribonuclease III family BFI33_00640 SM00967 RNA 2'-O ribose methyltransferase substrate binding BFI33_00665 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BFI33_00665 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BFI33_00670 SM00649 Ribosomal protein L11/L12 BFI33_00700 SM00663 RNA polymerase I subunit A N-terminus BFI33_00720 SM00838 Elongation factor G C-terminus BFI33_00720 SM00889 Elongation factor G, domain IV BFI33_00735 SM01403 BFI33_00735 BFI33_00755 SM01382 BFI33_00755 BFI33_00755 SM01383 BFI33_00755 BFI33_00770 SM00322 K homology RNA-binding domain BFI33_00790 SM01374 BFI33_00790 BFI33_00795 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BFI33_00860 SM00316 Ribosomal protein S1-like RNA-binding domain BFI33_00880 SM00662 RNA polymerases D BFI33_00890 SM00382 ATPases associated with a variety of cellular activities BFI33_00895 SM00382 ATPases associated with a variety of cellular activities BFI33_00930 SM00646 BFI33_00930 BFI33_00945 SM01251 BFI33_00945 BFI33_01065 SM00342 helix_turn_helix, arabinose operon control protein BFI33_01165 SM00478 endonuclease III BFI33_01170 SM00342 helix_turn_helix, arabinose operon control protein BFI33_01210 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BFI33_01230 SM00729 Elongator protein 3, MiaB family, Radical SAM BFI33_01240 SM00382 ATPases associated with a variety of cellular activities BFI33_01265 SM00448 cheY-homologous receiver domain BFI33_01265 SM00862 Transcriptional regulatory protein, C terminal BFI33_01270 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BFI33_01270 SM00388 His Kinase A (phosphoacceptor) domain BFI33_01345 SM00347 helix_turn_helix multiple antibiotic resistance protein BFI33_01375 SM00342 helix_turn_helix, arabinose operon control protein BFI33_01425 SM00342 helix_turn_helix, arabinose operon control protein BFI33_01430 SM00450 Rhodanese Homology Domain BFI33_01450 SM00345 helix_turn_helix gluconate operon transcriptional repressor BFI33_01450 SM00866 BFI33_01450 BFI33_01490 SM00387 Histidine kinase-like ATPases BFI33_01495 SM00448 cheY-homologous receiver domain BFI33_01500 SM01130 BFI33_01500 BFI33_01515 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BFI33_01520 SM00345 helix_turn_helix gluconate operon transcriptional repressor BFI33_01520 SM00895 BFI33_01520 BFI33_01525 SM00858 BFI33_01525 BFI33_01545 SM00448 cheY-homologous receiver domain BFI33_01545 SM00862 Transcriptional regulatory protein, C terminal BFI33_01550 SM00387 Histidine kinase-like ATPases BFI33_01550 SM00388 His Kinase A (phosphoacceptor) domain BFI33_01555 SM00382 ATPases associated with a variety of cellular activities BFI33_01580 SM00327 von Willebrand factor (vWF) type A domain BFI33_01625 SM00870 BFI33_01625 BFI33_01645 SM00387 Histidine kinase-like ATPases BFI33_01650 SM00448 cheY-homologous receiver domain BFI33_01650 SM00850 LytTr DNA-binding domain BFI33_01655 SM00382 ATPases associated with a variety of cellular activities BFI33_01690 SM00028 Tetratricopeptide repeats BFI33_01700 SM00642 Alpha-amylase domain BFI33_01710 SM00382 ATPases associated with a variety of cellular activities BFI33_01765 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BFI33_01770 SM00116 Domain in cystathionine beta-synthase and other proteins. BFI33_01770 SM00382 ATPases associated with a variety of cellular activities BFI33_01805 SM00632 BFI33_01805 BFI33_01805 SM00642 Alpha-amylase domain BFI33_01825 SM00347 helix_turn_helix multiple antibiotic resistance protein BFI33_01940 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BFI33_01970 SM00833 Cobalamin synthesis protein cobW C-terminal domain BFI33_01980 SM00062 Bacterial periplasmic substrate-binding proteins BFI33_02015 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BFI33_02015 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BFI33_02025 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BFI33_02040 SM00823 Phosphopantetheine attachment site BFI33_02040 SM01294 BFI33_02040 BFI33_02045 SM00823 Phosphopantetheine attachment site BFI33_02045 SM01294 BFI33_02045 BFI33_02050 SM00823 Phosphopantetheine attachment site BFI33_02075 SM00345 helix_turn_helix gluconate operon transcriptional repressor BFI33_02090 SM00382 ATPases associated with a variety of cellular activities BFI33_02100 SM00062 Bacterial periplasmic substrate-binding proteins BFI33_02140 SM00710 Parallel beta-helix repeats BFI33_02140 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses BFI33_02165 SM00382 ATPases associated with a variety of cellular activities BFI33_02175 SM00448 cheY-homologous receiver domain BFI33_02175 SM00862 Transcriptional regulatory protein, C terminal BFI33_02180 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BFI33_02180 SM00387 Histidine kinase-like ATPases BFI33_02180 SM00388 His Kinase A (phosphoacceptor) domain BFI33_02185 SM00028 Tetratricopeptide repeats BFI33_02215 SM00382 ATPases associated with a variety of cellular activities BFI33_02245 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BFI33_02250 SM00345 helix_turn_helix gluconate operon transcriptional repressor BFI33_02285 SM00420 helix_turn_helix, Deoxyribose operon repressor BFI33_02310 SM01329 BFI33_02310 BFI33_02360 SM00796 Allophanate hydrolase subunit 1 BFI33_02365 SM00797 Allophanate hydrolase subunit 2 BFI33_02370 SM00346 helix_turn_helix isocitrate lyase regulation BFI33_02445 SM00344 helix_turn_helix ASNC type BFI33_02450 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BFI33_02450 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BFI33_02450 SM00493 BFI33_02450 BFI33_02460 SM00267 diguanylate cyclase BFI33_02550 SM00091 PAS domain BFI33_02550 SM00387 Histidine kinase-like ATPases BFI33_02555 SM00448 cheY-homologous receiver domain BFI33_02575 SM00382 ATPases associated with a variety of cellular activities BFI33_02625 SM00487 DEAD-like helicases superfamily BFI33_02625 SM00490 helicase superfamily c-terminal domain BFI33_02655 SM01005 Alanine racemase, C-terminal domain BFI33_02680 SM00387 Histidine kinase-like ATPases BFI33_02685 SM00331 Sigma factor PP2C-like phosphatases BFI33_02705 SM00331 Sigma factor PP2C-like phosphatases BFI33_02705 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BFI33_02725 SM00347 helix_turn_helix multiple antibiotic resistance protein BFI33_02730 SM00316 Ribosomal protein S1-like RNA-binding domain BFI33_02730 SM00732 Likely ribonuclease with RNase H fold. BFI33_02740 SM00731 SprT homologues. BFI33_02790 SM00530 Helix-turn-helix XRE-family like proteins BFI33_02885 SM00255 Toll - interleukin 1 - resistance BFI33_02890 SM00028 Tetratricopeptide repeats BFI33_02905 SM00344 helix_turn_helix ASNC type BFI33_02910 SM00344 helix_turn_helix ASNC type BFI33_02950 SM00357 Cold shock protein domain BFI33_02955 SM01058 CarD-like/TRCF domain BFI33_02965 SM00342 helix_turn_helix, arabinose operon control protein BFI33_02975 SM00342 helix_turn_helix, arabinose operon control protein BFI33_02975 SM00871 Bacterial transcription activator, effector binding domain BFI33_02980 SM00345 helix_turn_helix gluconate operon transcriptional repressor BFI33_03010 SM00345 helix_turn_helix gluconate operon transcriptional repressor BFI33_03060 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BFI33_03085 SM00345 helix_turn_helix gluconate operon transcriptional repressor BFI33_03095 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BFI33_03110 SM00387 Histidine kinase-like ATPases BFI33_03115 SM00421 helix_turn_helix, Lux Regulon BFI33_03115 SM00448 cheY-homologous receiver domain BFI33_03135 SM00422 helix_turn_helix, mercury resistance BFI33_03135 SM00871 Bacterial transcription activator, effector binding domain BFI33_03220 SM00382 ATPases associated with a variety of cellular activities BFI33_03235 SM00347 helix_turn_helix multiple antibiotic resistance protein BFI33_03250 SM00347 helix_turn_helix multiple antibiotic resistance protein BFI33_03250 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BFI33_03265 SM00345 helix_turn_helix gluconate operon transcriptional repressor BFI33_03265 SM00895 BFI33_03265 BFI33_03270 SM00257 Lysin motif BFI33_03270 SM00636 BFI33_03270 BFI33_03285 SM00098 Alkaline phosphatase homologues BFI33_03305 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BFI33_03340 SM00345 helix_turn_helix gluconate operon transcriptional repressor BFI33_03340 SM00866 BFI33_03340 BFI33_03425 SM00382 ATPases associated with a variety of cellular activities BFI33_03435 SM00881 CoA binding domain BFI33_03460 SM00883 Chaperonin 10 Kd subunit BFI33_03545 SM00028 Tetratricopeptide repeats BFI33_03545 SM00382 ATPases associated with a variety of cellular activities BFI33_03550 SM00829 Enoylreductase BFI33_03595 SM00829 Enoylreductase BFI33_03660 SM00460 Transglutaminase/protease-like homologues BFI33_03695 SM01001 AIR carboxylase BFI33_03705 SM00998 Adenylosuccinate lyase C-terminus BFI33_03720 SM01211 BFI33_03720 BFI33_03745 SM00798 AICARFT/IMPCHase bienzyme BFI33_03745 SM00851 MGS-like domain BFI33_03750 SM01209 BFI33_03750 BFI33_03750 SM01210 BFI33_03750 BFI33_03755 SM00344 helix_turn_helix ASNC type BFI33_03805 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BFI33_03805 SM00292 breast cancer carboxy-terminal domain BFI33_03805 SM00532 Ligase N family BFI33_03840 SM00845 GatB domain BFI33_03855 SM00046 Diacylglycerol kinase catalytic domain (presumed) BFI33_03880 SM00487 DEAD-like helicases superfamily BFI33_03885 SM00974 BFI33_03885 BFI33_03915 SM00028 Tetratricopeptide repeats BFI33_03980 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BFI33_03980 SM00387 Histidine kinase-like ATPases BFI33_03985 SM00342 helix_turn_helix, arabinose operon control protein BFI33_03985 SM00448 cheY-homologous receiver domain BFI33_04010 SM00342 helix_turn_helix, arabinose operon control protein BFI33_04115 SM00347 helix_turn_helix multiple antibiotic resistance protein BFI33_04185 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BFI33_04190 SM00382 ATPases associated with a variety of cellular activities BFI33_04200 SM00422 helix_turn_helix, mercury resistance BFI33_04220 SM00382 ATPases associated with a variety of cellular activities BFI33_04225 SM00487 DEAD-like helicases superfamily BFI33_04225 SM00490 helicase superfamily c-terminal domain BFI33_04235 SM00829 Enoylreductase BFI33_04260 SM00382 ATPases associated with a variety of cellular activities BFI33_04290 SM00656 BFI33_04290 BFI33_04300 SM00387 Histidine kinase-like ATPases BFI33_04305 SM00448 cheY-homologous receiver domain BFI33_04325 SM00849 Metallo-beta-lactamase superfamily BFI33_04410 SM00642 Alpha-amylase domain BFI33_04415 SM00345 helix_turn_helix gluconate operon transcriptional repressor BFI33_04415 SM00866 BFI33_04415 BFI33_04445 SM00226 Low molecular weight phosphatase family BFI33_04515 SM00478 endonuclease III BFI33_04550 SM00861 Transketolase, pyrimidine binding domain BFI33_04565 SM00382 ATPases associated with a variety of cellular activities BFI33_04620 SM00382 ATPases associated with a variety of cellular activities BFI33_04625 SM00382 ATPases associated with a variety of cellular activities BFI33_04640 SM00342 helix_turn_helix, arabinose operon control protein BFI33_04660 SM00387 Histidine kinase-like ATPases BFI33_04665 SM00421 helix_turn_helix, Lux Regulon BFI33_04665 SM00448 cheY-homologous receiver domain BFI33_04670 SM00382 ATPases associated with a variety of cellular activities BFI33_04720 SM00347 helix_turn_helix multiple antibiotic resistance protein BFI33_04800 SM00287 Bacterial SH3 domain homologues BFI33_04830 SM00478 endonuclease III BFI33_04830 SM00525 BFI33_04830 BFI33_04860 SM00382 ATPases associated with a variety of cellular activities BFI33_05030 SM01060 BFI33_05030 BFI33_05035 SM00382 ATPases associated with a variety of cellular activities BFI33_05040 SM00062 Bacterial periplasmic substrate-binding proteins BFI33_05070 SM00530 Helix-turn-helix XRE-family like proteins BFI33_05085 SM00567 E-Z type HEAT repeats BFI33_05115 SM00763 PrkA AAA domain BFI33_05130 SM00347 helix_turn_helix multiple antibiotic resistance protein BFI33_05160 SM00345 helix_turn_helix gluconate operon transcriptional repressor BFI33_05165 SM00382 ATPases associated with a variety of cellular activities BFI33_05170 SM00382 ATPases associated with a variety of cellular activities BFI33_05180 SM00357 Cold shock protein domain BFI33_05195 SM00267 diguanylate cyclase BFI33_05225 SM00318 Staphylococcal nuclease homologues BFI33_05235 SM00363 S4 RNA-binding domain BFI33_05245 SM00116 Domain in cystathionine beta-synthase and other proteins. BFI33_05290 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BFI33_05290 SM00387 Histidine kinase-like ATPases BFI33_05295 SM00421 helix_turn_helix, Lux Regulon BFI33_05295 SM00448 cheY-homologous receiver domain BFI33_05315 SM00257 Lysin motif BFI33_05335 SM00098 Alkaline phosphatase homologues BFI33_05340 SM00257 Lysin motif BFI33_05370 SM00345 helix_turn_helix gluconate operon transcriptional repressor BFI33_05400 SM00563 Phosphate acyltransferases BFI33_05405 SM01091 Transporter associated domain BFI33_05410 SM00422 helix_turn_helix, mercury resistance BFI33_05420 SM01091 Transporter associated domain BFI33_05480 SM00382 ATPases associated with a variety of cellular activities BFI33_05485 SM00382 ATPases associated with a variety of cellular activities BFI33_05535 SM00729 Elongator protein 3, MiaB family, Radical SAM BFI33_05565 SM00382 ATPases associated with a variety of cellular activities BFI33_05585 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BFI33_05615 SM00347 helix_turn_helix multiple antibiotic resistance protein BFI33_05645 SM00382 ATPases associated with a variety of cellular activities BFI33_05730 SM01022 BFI33_05730 BFI33_05745 SM00849 Metallo-beta-lactamase superfamily BFI33_05785 SM00829 Enoylreductase BFI33_05795 SM00855 Phosphoglycerate mutase family BFI33_05815 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BFI33_05830 SM00914 BFI33_05830 BFI33_05845 SM00894 Excalibur calcium-binding domain BFI33_05880 SM00347 helix_turn_helix multiple antibiotic resistance protein BFI33_05905 SM00354 helix_turn _helix lactose operon repressor BFI33_06045 SM00342 helix_turn_helix, arabinose operon control protein BFI33_06050 SM00354 helix_turn _helix lactose operon repressor BFI33_06070 SM00345 helix_turn_helix gluconate operon transcriptional repressor BFI33_06115 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BFI33_06145 SM00316 Ribosomal protein S1-like RNA-binding domain BFI33_06155 SM00752 Horizontally Transferred TransMembrane Domain BFI33_06240 SM00859 Semialdehyde dehydrogenase, NAD binding domain BFI33_06260 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BFI33_06265 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BFI33_06315 SM00825 Beta-ketoacyl synthase BFI33_06325 SM00382 ATPases associated with a variety of cellular activities BFI33_06330 SM00382 ATPases associated with a variety of cellular activities BFI33_06375 SM00382 ATPases associated with a variety of cellular activities BFI33_06380 SM00382 ATPases associated with a variety of cellular activities BFI33_06445 SM01118 BFI33_06445 BFI33_06455 SM00954 Region found in RelA / SpoT proteins BFI33_06680 SM00635 Bacterial Ig-like domain 2 BFI33_06775 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BFI33_06775 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BFI33_06825 SM00382 ATPases associated with a variety of cellular activities BFI33_06835 SM00835 Cupin BFI33_06865 SM00829 Enoylreductase BFI33_06885 SM00354 helix_turn _helix lactose operon repressor BFI33_06895 SM00858 BFI33_06895 BFI33_06910 SM00382 ATPases associated with a variety of cellular activities BFI33_06915 SM00028 Tetratricopeptide repeats BFI33_06930 SM00257 Lysin motif BFI33_06930 SM00644 BFI33_06930 BFI33_06955 SM00530 Helix-turn-helix XRE-family like proteins BFI33_06970 SM00382 ATPases associated with a variety of cellular activities BFI33_07075 SM00257 Lysin motif BFI33_07140 SM00257 Lysin motif BFI33_07140 SM00644 BFI33_07140 BFI33_07190 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BFI33_07215 SM00382 ATPases associated with a variety of cellular activities BFI33_07230 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BFI33_07240 SM00382 ATPases associated with a variety of cellular activities BFI33_07300 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BFI33_07315 SM00347 helix_turn_helix multiple antibiotic resistance protein BFI33_07355 SM00382 ATPases associated with a variety of cellular activities BFI33_07370 SM00448 cheY-homologous receiver domain BFI33_07370 SM00862 Transcriptional regulatory protein, C terminal BFI33_07375 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BFI33_07375 SM00387 Histidine kinase-like ATPases BFI33_07375 SM00388 His Kinase A (phosphoacceptor) domain BFI33_07405 SM00116 Domain in cystathionine beta-synthase and other proteins. BFI33_07405 SM00924 MgtE intracellular N domain BFI33_07410 SM00422 helix_turn_helix, mercury resistance BFI33_07425 SM00347 helix_turn_helix multiple antibiotic resistance protein BFI33_07460 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen BFI33_07465 SM00052 Putative diguanylate phosphodiesterase BFI33_07465 SM00267 diguanylate cyclase BFI33_07525 SM00091 PAS domain BFI33_07525 SM00387 Histidine kinase-like ATPases BFI33_07525 SM00388 His Kinase A (phosphoacceptor) domain BFI33_07570 SM01007 Class II Aldolase and Adducin N-terminal domain BFI33_07595 SM00387 Histidine kinase-like ATPases BFI33_07595 SM00388 His Kinase A (phosphoacceptor) domain BFI33_07600 SM00347 helix_turn_helix multiple antibiotic resistance protein BFI33_07615 SM00382 ATPases associated with a variety of cellular activities BFI33_07615 SM01086 C-terminal, D2-small domain, of ClpB protein BFI33_07650 SM00822 BFI33_07650 BFI33_07655 SM00257 Lysin motif BFI33_07660 SM00257 Lysin motif BFI33_07665 SM00636 BFI33_07665 BFI33_07730 SM00354 helix_turn _helix lactose operon repressor BFI33_07735 SM01061 CAT RNA binding domain BFI33_07770 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BFI33_07770 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BFI33_07790 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BFI33_07790 SM00091 PAS domain BFI33_07790 SM00387 Histidine kinase-like ATPases BFI33_07790 SM00388 His Kinase A (phosphoacceptor) domain BFI33_07805 SM00260 Two component signalling adaptor domain BFI33_07805 SM00448 cheY-homologous receiver domain BFI33_07820 SM00257 Lysin motif BFI33_07850 SM00052 Putative diguanylate phosphodiesterase BFI33_07950 SM00852 Probable molybdopterin binding domain BFI33_07970 SM00382 ATPases associated with a variety of cellular activities BFI33_07975 SM00382 ATPases associated with a variety of cellular activities BFI33_07990 SM00382 ATPases associated with a variety of cellular activities BFI33_07995 SM01066 Carbohydrate binding domain BFI33_08000 SM00420 helix_turn_helix, Deoxyribose operon repressor BFI33_08000 SM01134 BFI33_08000 BFI33_08025 SM00382 ATPases associated with a variety of cellular activities BFI33_08050 SM00966 SpoVT / AbrB like domain BFI33_08055 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BFI33_08055 SM00091 PAS domain BFI33_08055 SM00387 Histidine kinase-like ATPases BFI33_08055 SM00388 His Kinase A (phosphoacceptor) domain BFI33_08075 SM00849 Metallo-beta-lactamase superfamily BFI33_08110 SM00861 Transketolase, pyrimidine binding domain BFI33_08200 SM00838 Elongation factor G C-terminus BFI33_08220 SM00670 Large family of predicted nucleotide-binding domains BFI33_08245 SM00878 Biotin carboxylase C-terminal domain BFI33_08290 SM00116 Domain in cystathionine beta-synthase and other proteins. BFI33_08340 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BFI33_08400 SM00740 BFI33_08400 BFI33_08410 SM00740 BFI33_08410 BFI33_08475 SM00842 Cell division protein FtsA BFI33_08480 SM00864 Tubulin/FtsZ family, GTPase domain BFI33_08480 SM00865 Tubulin/FtsZ family, C-terminal domain BFI33_08505 SM00382 ATPases associated with a variety of cellular activities BFI33_08540 SM00363 S4 RNA-binding domain BFI33_08565 SM00363 S4 RNA-binding domain BFI33_08590 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BFI33_08595 SM00851 MGS-like domain BFI33_08595 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BFI33_08595 SM01209 BFI33_08595 BFI33_08610 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BFI33_08660 SM00831 Cation transporter/ATPase, N-terminus BFI33_08675 SM00072 Guanylate kinase homologues. BFI33_08680 SM01409 BFI33_08680 BFI33_08690 SM00487 DEAD-like helicases superfamily BFI33_08690 SM00490 helicase superfamily c-terminal domain BFI33_08715 SM00331 Sigma factor PP2C-like phosphatases BFI33_08715 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BFI33_08720 SM00220 Serine/Threonine protein kinases, catalytic domain BFI33_08720 SM00740 BFI33_08720 BFI33_08735 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain BFI33_08755 SM01120 BFI33_08755 BFI33_08755 SM01121 BFI33_08755 BFI33_08770 SM00487 DEAD-like helicases superfamily BFI33_08770 SM00490 helicase superfamily c-terminal domain BFI33_08785 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BFI33_08790 SM00822 BFI33_08790 BFI33_08800 SM00358 Double-stranded RNA binding motif BFI33_08800 SM00535 Ribonuclease III family BFI33_08805 SM00968 SMC proteins Flexible Hinge Domain BFI33_08810 SM00382 ATPases associated with a variety of cellular activities BFI33_08810 SM00962 SRP54-type protein, GTPase domain BFI33_08810 SM00963 SRP54-type protein, helical bundle domain BFI33_08825 SM00382 ATPases associated with a variety of cellular activities BFI33_08825 SM00962 SRP54-type protein, GTPase domain BFI33_08825 SM00963 SRP54-type protein, helical bundle domain BFI33_08885 SM00881 CoA binding domain BFI33_08895 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BFI33_08895 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BFI33_08895 SM00493 BFI33_08895 BFI33_08915 SM00382 ATPases associated with a variety of cellular activities BFI33_08915 SM01086 C-terminal, D2-small domain, of ClpB protein BFI33_08955 SM00382 ATPases associated with a variety of cellular activities BFI33_09005 SM00448 cheY-homologous receiver domain BFI33_09040 SM00962 SRP54-type protein, GTPase domain BFI33_09050 SM00448 cheY-homologous receiver domain BFI33_09055 SM00073 Histidine Phosphotransfer domain BFI33_09055 SM00260 Two component signalling adaptor domain BFI33_09055 SM00387 Histidine kinase-like ATPases BFI33_09055 SM01231 BFI33_09055 BFI33_09060 SM00260 Two component signalling adaptor domain BFI33_09120 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BFI33_09130 SM00479 BFI33_09130 BFI33_09130 SM00481 DNA polymerase alpha chain like domain BFI33_09140 SM00316 Ribosomal protein S1-like RNA-binding domain BFI33_09140 SM00322 K homology RNA-binding domain BFI33_09175 SM00904 Riboflavin kinase BFI33_09180 SM01387 BFI33_09180 BFI33_09185 SM00316 Ribosomal protein S1-like RNA-binding domain BFI33_09185 SM00322 K homology RNA-binding domain BFI33_09220 SM00859 Semialdehyde dehydrogenase, NAD binding domain BFI33_09230 SM01130 BFI33_09230 BFI33_09235 SM00849 Metallo-beta-lactamase superfamily BFI33_09250 SM00382 ATPases associated with a variety of cellular activities BFI33_09250 SM00843 BFI33_09250 BFI33_09255 SM00345 helix_turn_helix gluconate operon transcriptional repressor BFI33_09255 SM00866 BFI33_09255 BFI33_09290 SM00530 Helix-turn-helix XRE-family like proteins BFI33_09300 SM00852 Probable molybdopterin binding domain BFI33_09305 SM00382 ATPases associated with a variety of cellular activities BFI33_09315 SM00322 K homology RNA-binding domain BFI33_09315 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BFI33_09330 SM00829 Enoylreductase BFI33_09340 SM00729 Elongator protein 3, MiaB family, Radical SAM BFI33_09355 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BFI33_09355 SM00534 ATPase domain of DNA mismatch repair MUTS family BFI33_09360 SM00853 MutL C terminal dimerisation domain BFI33_09360 SM01340 BFI33_09360 BFI33_09385 SM00849 Metallo-beta-lactamase superfamily BFI33_09395 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BFI33_09400 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BFI33_09405 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BFI33_09415 SM00825 Beta-ketoacyl synthase BFI33_09435 SM00822 BFI33_09435 BFI33_09435 SM00823 Phosphopantetheine attachment site BFI33_09435 SM00825 Beta-ketoacyl synthase BFI33_09435 SM00826 BFI33_09435 BFI33_09435 SM01294 BFI33_09435 BFI33_09440 SM00822 BFI33_09440 BFI33_09440 SM00823 Phosphopantetheine attachment site BFI33_09440 SM00825 Beta-ketoacyl synthase BFI33_09440 SM00826 BFI33_09440 BFI33_09440 SM01294 BFI33_09440 BFI33_09445 SM00822 BFI33_09445 BFI33_09445 SM00823 Phosphopantetheine attachment site BFI33_09445 SM00825 Beta-ketoacyl synthase BFI33_09445 SM00826 BFI33_09445 BFI33_09445 SM01294 BFI33_09445 BFI33_09450 SM00822 BFI33_09450 BFI33_09450 SM00823 Phosphopantetheine attachment site BFI33_09450 SM00825 Beta-ketoacyl synthase BFI33_09450 SM00826 BFI33_09450 BFI33_09450 SM01294 BFI33_09450 BFI33_09455 SM00823 Phosphopantetheine attachment site BFI33_09455 SM00825 Beta-ketoacyl synthase BFI33_09455 SM01294 BFI33_09455 BFI33_09470 SM00849 Metallo-beta-lactamase superfamily BFI33_09555 SM00646 BFI33_09555 BFI33_09560 SM00382 ATPases associated with a variety of cellular activities BFI33_09580 SM00422 helix_turn_helix, mercury resistance BFI33_09585 SM01230 BFI33_09585 BFI33_09605 SM00860 SMI1 / KNR4 family BFI33_09670 SM00318 Staphylococcal nuclease homologues BFI33_09680 SM01005 Alanine racemase, C-terminal domain BFI33_09815 SM00257 Lysin motif BFI33_09820 SM00857 Resolvase, N terminal domain BFI33_09830 SM00861 Transketolase, pyrimidine binding domain BFI33_09855 SM00448 cheY-homologous receiver domain BFI33_09925 SM01207 BFI33_09925 BFI33_09930 SM00881 CoA binding domain BFI33_09935 SM00387 Histidine kinase-like ATPases BFI33_09935 SM00433 TopoisomeraseII BFI33_09940 SM00434 DNA Topoisomerase IV BFI33_09960 SM01067 Cellulose binding domain BFI33_09975 SM00606 Cellulose Binding Domain Type IV BFI33_10025 SM00878 Biotin carboxylase C-terminal domain BFI33_10060 SM00823 Phosphopantetheine attachment site BFI33_10060 SM00824 Thioesterase BFI33_10065 SM00823 Phosphopantetheine attachment site BFI33_10070 SM00823 Phosphopantetheine attachment site BFI33_10070 SM01294 BFI33_10070 BFI33_10075 SM00823 Phosphopantetheine attachment site BFI33_10080 SM00823 Phosphopantetheine attachment site BFI33_10130 SM00829 Enoylreductase BFI33_10150 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BFI33_10165 SM00822 BFI33_10165 BFI33_10200 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BFI33_10225 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BFI33_10225 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BFI33_10245 SM00656 BFI33_10245 BFI33_10260 SM00835 Cupin BFI33_10295 SM00530 Helix-turn-helix XRE-family like proteins BFI33_10360 SM00530 Helix-turn-helix XRE-family like proteins BFI33_10455 SM00860 SMI1 / KNR4 family BFI33_10465 SM00860 SMI1 / KNR4 family BFI33_10475 SM00710 Parallel beta-helix repeats BFI33_10485 SM00342 helix_turn_helix, arabinose operon control protein BFI33_10500 SM00849 Metallo-beta-lactamase superfamily BFI33_10505 SM00871 Bacterial transcription activator, effector binding domain BFI33_10520 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BFI33_10560 SM00421 helix_turn_helix, Lux Regulon BFI33_10560 SM00448 cheY-homologous receiver domain BFI33_10565 SM00257 Lysin motif BFI33_10570 SM00341 Helicase and RNase D C-terminal BFI33_10570 SM00487 DEAD-like helicases superfamily BFI33_10570 SM00490 helicase superfamily c-terminal domain BFI33_10570 SM00956 BFI33_10570 BFI33_10660 SM00861 Transketolase, pyrimidine binding domain BFI33_10665 SM00327 von Willebrand factor (vWF) type A domain BFI33_10670 SM00382 ATPases associated with a variety of cellular activities BFI33_10680 SM00257 Lysin motif BFI33_10775 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BFI33_10775 SM00245 tail specific protease BFI33_10810 SM00014 Acid phosphatase homologues BFI33_10860 SM00882 Coenzyme A transferase BFI33_10865 SM00882 Coenzyme A transferase BFI33_10930 SM00530 Helix-turn-helix XRE-family like proteins BFI33_11010 SM00871 Bacterial transcription activator, effector binding domain BFI33_11030 SM00507 HNH nucleases BFI33_11190 SM00481 DNA polymerase alpha chain like domain BFI33_11245 SM00710 Parallel beta-helix repeats BFI33_11320 SM00507 HNH nucleases BFI33_11410 SM00530 Helix-turn-helix XRE-family like proteins BFI33_11430 SM00530 Helix-turn-helix XRE-family like proteins BFI33_11535 SM00530 Helix-turn-helix XRE-family like proteins BFI33_11550 SM00411 bacterial (prokaryotic) histone like domain BFI33_11745 SM00644 BFI33_11745 BFI33_11775 SM00382 ATPases associated with a variety of cellular activities BFI33_11825 SM00860 SMI1 / KNR4 family BFI33_11830 SM00860 SMI1 / KNR4 family BFI33_11840 SM00860 SMI1 / KNR4 family BFI33_11850 SM00318 Staphylococcal nuclease homologues BFI33_11850 SM00894 Excalibur calcium-binding domain BFI33_11885 SM00857 Resolvase, N terminal domain BFI33_11905 SM00347 helix_turn_helix multiple antibiotic resistance protein BFI33_11950 SM00382 ATPases associated with a variety of cellular activities BFI33_12000 SM00567 E-Z type HEAT repeats BFI33_12000 SM00932 Scaffold protein Nfu/NifU N terminal BFI33_12005 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BFI33_12025 SM00357 Cold shock protein domain BFI33_12065 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BFI33_12065 SM00475 5'-3' exonuclease BFI33_12130 SM00354 helix_turn _helix lactose operon repressor BFI33_12145 SM00491 BFI33_12145 BFI33_12155 SM00981 BFI33_12155 BFI33_12185 SM00487 DEAD-like helicases superfamily BFI33_12185 SM00490 helicase superfamily c-terminal domain BFI33_12245 SM00478 endonuclease III BFI33_12245 SM00525 BFI33_12245 BFI33_12275 SM00479 BFI33_12275 BFI33_12275 SM00487 DEAD-like helicases superfamily BFI33_12275 SM00491 BFI33_12275 BFI33_12315 SM00851 MGS-like domain BFI33_12365 SM00914 BFI33_12365 BFI33_12370 SM00028 Tetratricopeptide repeats BFI33_12435 SM00138 Methyltransferase, chemotaxis proteins BFI33_12445 SM00562 BFI33_12445 BFI33_12475 SM00411 bacterial (prokaryotic) histone like domain BFI33_12525 SM01240 BFI33_12525 BFI33_12530 SM00316 Ribosomal protein S1-like RNA-binding domain BFI33_12570 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BFI33_12590 SM00257 Lysin motif BFI33_12600 SM00487 DEAD-like helicases superfamily BFI33_12600 SM00490 helicase superfamily c-terminal domain BFI33_12640 SM00091 PAS domain BFI33_12640 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BFI33_12640 SM00387 Histidine kinase-like ATPases BFI33_12640 SM00388 His Kinase A (phosphoacceptor) domain BFI33_12645 SM00448 cheY-homologous receiver domain BFI33_12645 SM00862 Transcriptional regulatory protein, C terminal BFI33_12665 SM00363 S4 RNA-binding domain BFI33_12680 SM00936 Penicillin-binding protein 5, C-terminal domain BFI33_12820 SM00387 Histidine kinase-like ATPases BFI33_12830 SM00936 Penicillin-binding protein 5, C-terminal domain BFI33_12870 SM00919 Malic enzyme, NAD binding domain BFI33_12870 SM01274 BFI33_12870 BFI33_12885 SM00870 BFI33_12885 BFI33_12890 SM00530 Helix-turn-helix XRE-family like proteins BFI33_12995 SM00849 Metallo-beta-lactamase superfamily BFI33_13020 SM00849 Metallo-beta-lactamase superfamily BFI33_13030 SM01350 BFI33_13030 BFI33_13085 SM00382 ATPases associated with a variety of cellular activities BFI33_13095 SM00062 Bacterial periplasmic substrate-binding proteins BFI33_13095 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BFI33_13105 SM00046 Diacylglycerol kinase catalytic domain (presumed) BFI33_13115 SM00422 helix_turn_helix, mercury resistance BFI33_13125 SM00861 Transketolase, pyrimidine binding domain BFI33_13145 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BFI33_13155 SM00091 PAS domain BFI33_13155 SM00382 ATPases associated with a variety of cellular activities BFI33_13200 SM00646 BFI33_13200 BFI33_13225 SM00448 cheY-homologous receiver domain BFI33_13235 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BFI33_13250 SM00363 S4 RNA-binding domain BFI33_13255 SM00861 Transketolase, pyrimidine binding domain BFI33_13290 SM00878 Biotin carboxylase C-terminal domain BFI33_13335 SM00382 ATPases associated with a variety of cellular activities BFI33_13345 SM00841 Elongation factor P, C-terminal BFI33_13345 SM01185 BFI33_13345 BFI33_13380 SM00529 Helix-turn-helix diphteria tox regulatory element BFI33_13390 SM00450 Rhodanese Homology Domain BFI33_13410 SM00487 DEAD-like helicases superfamily BFI33_13410 SM00490 helicase superfamily c-terminal domain BFI33_13425 SM00530 Helix-turn-helix XRE-family like proteins BFI33_13485 SM00382 ATPases associated with a variety of cellular activities BFI33_13500 SM01091 Transporter associated domain BFI33_13525 SM00849 Metallo-beta-lactamase superfamily BFI33_13545 SM00631 BFI33_13545 BFI33_13565 SM00028 Tetratricopeptide repeats BFI33_13605 SM00382 ATPases associated with a variety of cellular activities BFI33_13610 SM00382 ATPases associated with a variety of cellular activities BFI33_13660 SM00257 Lysin motif BFI33_13695 SM00518 AP endonuclease family 2 BFI33_13700 SM00487 DEAD-like helicases superfamily BFI33_13700 SM00490 helicase superfamily c-terminal domain BFI33_13735 SM00400 zinc finger BFI33_13735 SM00493 BFI33_13735 BFI33_13750 SM00116 Domain in cystathionine beta-synthase and other proteins. BFI33_13795 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BFI33_13850 SM00729 Elongator protein 3, MiaB family, Radical SAM BFI33_13865 SM00271 DnaJ molecular chaperone homology domain BFI33_13885 SM00729 Elongator protein 3, MiaB family, Radical SAM BFI33_13890 SM00838 Elongation factor G C-terminus BFI33_13925 SM00849 Metallo-beta-lactamase superfamily BFI33_13935 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BFI33_13955 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BFI33_13965 SM01103 BFI33_13965 BFI33_14000 SM00644 BFI33_14000 BFI33_14010 SM01350 BFI33_14010 BFI33_14030 SM00857 Resolvase, N terminal domain BFI33_14035 SM00226 Low molecular weight phosphatase family BFI33_14050 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BFI33_14060 SM00028 Tetratricopeptide repeats BFI33_14100 SM00644 BFI33_14100 BFI33_14160 SM00257 Lysin motif BFI33_14295 SM00382 ATPases associated with a variety of cellular activities BFI33_14325 SM00530 Helix-turn-helix XRE-family like proteins BFI33_14335 SM00530 Helix-turn-helix XRE-family like proteins BFI33_14340 SM00530 Helix-turn-helix XRE-family like proteins BFI33_14375 SM00388 His Kinase A (phosphoacceptor) domain BFI33_14380 SM00448 cheY-homologous receiver domain BFI33_14380 SM00862 Transcriptional regulatory protein, C terminal BFI33_14420 SM00450 Rhodanese Homology Domain BFI33_14420 SM00849 Metallo-beta-lactamase superfamily BFI33_14430 SM00450 Rhodanese Homology Domain BFI33_14460 SM00422 helix_turn_helix, mercury resistance BFI33_14475 SM01091 Transporter associated domain BFI33_14535 SM00344 helix_turn_helix ASNC type BFI33_14640 SM00287 Bacterial SH3 domain homologues BFI33_14680 SM00422 helix_turn_helix, mercury resistance BFI33_14690 SM00829 Enoylreductase BFI33_14700 SM00640 Glycosyl hydrolases family 32 BFI33_14725 SM00382 ATPases associated with a variety of cellular activities BFI33_14795 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BFI33_14795 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BFI33_14825 SM00650 Ribosomal RNA adenine dimethylases BFI33_14880 SM00732 Likely ribonuclease with RNase H fold. BFI33_14890 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BFI33_14900 SM00382 ATPases associated with a variety of cellular activities BFI33_14905 SM00062 Bacterial periplasmic substrate-binding proteins BFI33_14905 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BFI33_14935 SM00382 ATPases associated with a variety of cellular activities BFI33_14940 SM00028 Tetratricopeptide repeats BFI33_14960 SM00382 ATPases associated with a variety of cellular activities BFI33_14990 SM00287 Bacterial SH3 domain homologues BFI33_14990 SM00646 BFI33_14990 BFI33_15000 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BFI33_15000 SM00954 Region found in RelA / SpoT proteins BFI33_15050 SM01323 BFI33_15050 BFI33_15070 SM00382 ATPases associated with a variety of cellular activities BFI33_15075 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BFI33_15130 SM00257 Lysin motif BFI33_15175 SM01317 BFI33_15175 BFI33_15275 SM00257 Lysin motif BFI33_15285 SM01004 Delta-aminolevulinic acid dehydratase BFI33_15320 SM00382 ATPases associated with a variety of cellular activities BFI33_15320 SM00464 Found in ATP-dependent protease La (LON) BFI33_15325 SM00382 ATPases associated with a variety of cellular activities BFI33_15330 SM00382 ATPases associated with a variety of cellular activities BFI33_15330 SM00994 ClpX C4-type zinc finger BFI33_15330 SM01086 C-terminal, D2-small domain, of ClpB protein BFI33_15355 SM01329 BFI33_15355 BFI33_15360 SM00917 LeuA allosteric (dimerisation) domain BFI33_15420 SM00909 Sporulation and spore germination BFI33_15430 SM00347 helix_turn_helix multiple antibiotic resistance protein BFI33_15435 SM00421 helix_turn_helix, Lux Regulon BFI33_15475 SM00465 GIY-YIG type nucleases (URI domain) BFI33_15485 SM00813 Alpha-L-arabinofuranosidase C-terminus BFI33_15490 SM00893 Electron transfer flavoprotein domain BFI33_15495 SM00893 Electron transfer flavoprotein domain BFI33_15520 SM00463 Small MutS-related domain BFI33_15520 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BFI33_15520 SM00534 ATPase domain of DNA mismatch repair MUTS family BFI33_15525 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BFI33_15525 SM00481 DNA polymerase alpha chain like domain BFI33_15525 SM00483 DNA polymerase X family BFI33_15545 SM00873 B3/4 domain BFI33_15545 SM00874 tRNA synthetase B5 domain BFI33_15545 SM00896 Ferredoxin-fold anticodon binding domain BFI33_15560 SM00967 RNA 2'-O ribose methyltransferase substrate binding BFI33_15600 SM00813 Alpha-L-arabinofuranosidase C-terminus BFI33_15630 SM01007 Class II Aldolase and Adducin N-terminal domain BFI33_15695 SM00448 cheY-homologous receiver domain BFI33_15695 SM00850 LytTr DNA-binding domain BFI33_15700 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BFI33_15700 SM00387 Histidine kinase-like ATPases BFI33_15710 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BFI33_15725 SM00382 ATPases associated with a variety of cellular activities BFI33_15745 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BFI33_15780 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BFI33_15780 SM01232 BFI33_15780 BFI33_15785 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BFI33_15785 SM00474 3'-5' exonuclease BFI33_15785 SM00475 5'-3' exonuclease BFI33_15785 SM00482 DNA polymerase A domain BFI33_15790 SM00091 PAS domain BFI33_15790 SM00387 Histidine kinase-like ATPases BFI33_15790 SM00388 His Kinase A (phosphoacceptor) domain BFI33_15795 SM00448 cheY-homologous receiver domain BFI33_15795 SM00862 Transcriptional regulatory protein, C terminal BFI33_15805 SM01329 BFI33_15805 BFI33_15850 SM00919 Malic enzyme, NAD binding domain BFI33_15850 SM01274 BFI33_15850 BFI33_15855 SM00481 DNA polymerase alpha chain like domain BFI33_15885 SM00116 Domain in cystathionine beta-synthase and other proteins. BFI33_15905 SM00904 Riboflavin kinase BFI33_15925 SM00382 ATPases associated with a variety of cellular activities BFI33_15940 SM00062 Bacterial periplasmic substrate-binding proteins BFI33_15945 SM00062 Bacterial periplasmic substrate-binding proteins BFI33_15960 SM00849 Metallo-beta-lactamase superfamily BFI33_15985 SM00852 Probable molybdopterin binding domain BFI33_16045 SM00981 BFI33_16045 BFI33_16075 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BFI33_16080 SM00267 diguanylate cyclase BFI33_16085 SM00363 S4 RNA-binding domain BFI33_16085 SM01390 BFI33_16085 BFI33_16095 SM00363 S4 RNA-binding domain BFI33_16110 SM00116 Domain in cystathionine beta-synthase and other proteins. BFI33_16130 SM00354 helix_turn _helix lactose operon repressor BFI33_16135 SM00830 Chorismate mutase type II BFI33_16160 SM00382 ATPases associated with a variety of cellular activities BFI33_16160 SM00843 BFI33_16160 BFI33_16195 SM00919 Malic enzyme, NAD binding domain BFI33_16195 SM01274 BFI33_16195 BFI33_16200 SM00849 Metallo-beta-lactamase superfamily BFI33_16220 SM00642 Alpha-amylase domain BFI33_16225 SM00046 Diacylglycerol kinase catalytic domain (presumed) BFI33_16260 SM00382 ATPases associated with a variety of cellular activities BFI33_16265 SM00420 helix_turn_helix, Deoxyribose operon repressor BFI33_16270 SM00363 S4 RNA-binding domain BFI33_16320 SM00342 helix_turn_helix, arabinose operon control protein BFI33_16345 SM00729 Elongator protein 3, MiaB family, Radical SAM BFI33_16345 SM00876 Biotin and Thiamin Synthesis associated domain BFI33_16375 SM00354 helix_turn _helix lactose operon repressor BFI33_16400 SM00450 Rhodanese Homology Domain BFI33_16415 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BFI33_16415 SM00091 PAS domain BFI33_16435 SM00382 ATPases associated with a variety of cellular activities BFI33_16440 SM00387 Histidine kinase-like ATPases BFI33_16445 SM00448 cheY-homologous receiver domain BFI33_16445 SM00862 Transcriptional regulatory protein, C terminal BFI33_16455 SM00382 ATPases associated with a variety of cellular activities BFI33_16470 SM00382 ATPases associated with a variety of cellular activities BFI33_16475 SM00345 helix_turn_helix gluconate operon transcriptional repressor BFI33_16490 SM00729 Elongator protein 3, MiaB family, Radical SAM BFI33_16550 SM00382 ATPases associated with a variety of cellular activities BFI33_16590 SM01234 BFI33_16590 BFI33_16595 SM00947 Carbonic anhydrase BFI33_16630 SM00382 ATPases associated with a variety of cellular activities BFI33_16640 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BFI33_16680 SM00984 UDP binding domain BFI33_16740 SM00642 Alpha-amylase domain BFI33_16880 SM00244 prohibitin homologues BFI33_16935 SM00047 Lysozyme subfamily 2 BFI33_16985 SM00420 helix_turn_helix, Deoxyribose operon repressor BFI33_16985 SM01134 BFI33_16985 BFI33_16990 SM01007 Class II Aldolase and Adducin N-terminal domain BFI33_16995 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BFI33_16995 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BFI33_16995 SM00319 Homologues of the ligand binding domain of Tar BFI33_17000 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BFI33_17000 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BFI33_17000 SM00319 Homologues of the ligand binding domain of Tar BFI33_17005 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BFI33_17005 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BFI33_17005 SM00319 Homologues of the ligand binding domain of Tar BFI33_17010 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BFI33_17010 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BFI33_17010 SM00319 Homologues of the ligand binding domain of Tar BFI33_17030 SM00642 Alpha-amylase domain BFI33_17035 SM01091 Transporter associated domain BFI33_17090 SM00316 Ribosomal protein S1-like RNA-binding domain BFI33_17100 SM00344 helix_turn_helix ASNC type BFI33_17120 SM00387 Histidine kinase-like ATPases BFI33_17120 SM00388 His Kinase A (phosphoacceptor) domain BFI33_17125 SM01298 BFI33_17125 BFI33_17130 SM00479 BFI33_17130 BFI33_17160 SM00091 PAS domain BFI33_17160 SM00387 Histidine kinase-like ATPases BFI33_17165 SM00448 cheY-homologous receiver domain BFI33_17175 SM00382 ATPases associated with a variety of cellular activities BFI33_17240 SM00421 helix_turn_helix, Lux Regulon BFI33_17240 SM00448 cheY-homologous receiver domain BFI33_17245 SM00387 Histidine kinase-like ATPases BFI33_17270 SM00052 Putative diguanylate phosphodiesterase BFI33_17315 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BFI33_17360 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BFI33_17360 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BFI33_17370 SM00923 MbtH-like protein BFI33_17375 SM00823 Phosphopantetheine attachment site BFI33_17375 SM00824 Thioesterase BFI33_17460 SM01240 BFI33_17460 BFI33_17560 SM00729 Elongator protein 3, MiaB family, Radical SAM BFI33_17640 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BFI33_17680 SM00382 ATPases associated with a variety of cellular activities BFI33_17685 SM00345 helix_turn_helix gluconate operon transcriptional repressor BFI33_17685 SM00866 BFI33_17685 BFI33_17715 SM00465 GIY-YIG type nucleases (URI domain) BFI33_17740 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BFI33_17765 SM00382 ATPases associated with a variety of cellular activities BFI33_17790 SM00382 ATPases associated with a variety of cellular activities BFI33_17790 SM00930 BFI33_17790 BFI33_17805 SM00493 BFI33_17805 BFI33_17860 SM00347 helix_turn_helix multiple antibiotic resistance protein BFI33_17895 SM00382 ATPases associated with a variety of cellular activities BFI33_17925 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BFI33_17930 SM00448 cheY-homologous receiver domain BFI33_17930 SM00862 Transcriptional regulatory protein, C terminal BFI33_17935 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BFI33_17935 SM00387 Histidine kinase-like ATPases BFI33_17935 SM00388 His Kinase A (phosphoacceptor) domain BFI33_17975 SM00421 helix_turn_helix, Lux Regulon BFI33_17975 SM00448 cheY-homologous receiver domain BFI33_17980 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BFI33_17980 SM00387 Histidine kinase-like ATPases BFI33_18015 SM00382 ATPases associated with a variety of cellular activities BFI33_18040 SM00387 Histidine kinase-like ATPases BFI33_18040 SM00388 His Kinase A (phosphoacceptor) domain BFI33_18045 SM00448 cheY-homologous receiver domain BFI33_18045 SM00862 Transcriptional regulatory protein, C terminal BFI33_18065 SM00835 Cupin BFI33_18080 SM00382 ATPases associated with a variety of cellular activities BFI33_18090 SM00382 ATPases associated with a variety of cellular activities BFI33_18260 SM00316 Ribosomal protein S1-like RNA-binding domain BFI33_18260 SM00357 Cold shock protein domain BFI33_18260 SM00955 BFI33_18260 BFI33_18280 SM00530 Helix-turn-helix XRE-family like proteins BFI33_18285 SM00530 Helix-turn-helix XRE-family like proteins BFI33_18290 SM00530 Helix-turn-helix XRE-family like proteins BFI33_18300 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BFI33_18300 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BFI33_18320 SM00116 Domain in cystathionine beta-synthase and other proteins. BFI33_18320 SM00382 ATPases associated with a variety of cellular activities BFI33_18335 SM00752 Horizontally Transferred TransMembrane Domain BFI33_18350 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BFI33_18370 SM00116 Domain in cystathionine beta-synthase and other proteins. BFI33_18370 SM00382 ATPases associated with a variety of cellular activities BFI33_18405 SM01192 BFI33_18405 BFI33_18405 SM01193 BFI33_18405 BFI33_18430 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BFI33_18445 SM00345 helix_turn_helix gluconate operon transcriptional repressor BFI33_18470 SM00636 BFI33_18470 BFI33_18490 SM00421 helix_turn_helix, Lux Regulon BFI33_18490 SM00448 cheY-homologous receiver domain BFI33_18505 SM00382 ATPases associated with a variety of cellular activities BFI33_18515 SM00331 Sigma factor PP2C-like phosphatases BFI33_18545 SM00354 helix_turn _helix lactose operon repressor BFI33_18550 SM00345 helix_turn_helix gluconate operon transcriptional repressor BFI33_18550 SM00895 BFI33_18550 BFI33_18645 SM00530 Helix-turn-helix XRE-family like proteins BFI33_18685 SM00640 Glycosyl hydrolases family 32 BFI33_18740 SM00642 Alpha-amylase domain BFI33_18770 SM00642 Alpha-amylase domain BFI33_18775 SM00354 helix_turn _helix lactose operon repressor BFI33_18795 SM00947 Carbonic anhydrase BFI33_18810 SM00382 ATPases associated with a variety of cellular activities BFI33_18815 SM00387 Histidine kinase-like ATPases BFI33_18820 SM00448 cheY-homologous receiver domain BFI33_18820 SM00862 Transcriptional regulatory protein, C terminal BFI33_18870 SM00028 Tetratricopeptide repeats BFI33_18875 SM00382 ATPases associated with a variety of cellular activities BFI33_18980 SM00345 helix_turn_helix gluconate operon transcriptional repressor BFI33_18980 SM00866 BFI33_18980 BFI33_18990 SM00347 helix_turn_helix multiple antibiotic resistance protein BFI33_19005 SM00347 helix_turn_helix multiple antibiotic resistance protein BFI33_19045 SM00382 ATPases associated with a variety of cellular activities BFI33_19050 SM00487 DEAD-like helicases superfamily BFI33_19050 SM00490 helicase superfamily c-terminal domain BFI33_19075 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BFI33_19085 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BFI33_19085 SM00245 tail specific protease BFI33_19095 SM00382 ATPases associated with a variety of cellular activities BFI33_19110 SM00937 BFI33_19110 BFI33_19115 SM00957 SecA DEAD-like domain BFI33_19115 SM00958 SecA preprotein cross-linking domain BFI33_19205 SM00487 DEAD-like helicases superfamily BFI33_19205 SM00490 helicase superfamily c-terminal domain BFI33_19215 SM00421 helix_turn_helix, Lux Regulon BFI33_19215 SM00448 cheY-homologous receiver domain BFI33_19220 SM00387 Histidine kinase-like ATPases BFI33_19260 SM00984 UDP binding domain BFI33_19285 SM00646 BFI33_19285 BFI33_19335 SM00382 ATPases associated with a variety of cellular activities BFI33_19375 SM00047 Lysozyme subfamily 2 BFI33_19375 SM00287 Bacterial SH3 domain homologues BFI33_19430 SM00854 Bacterial capsule synthesis protein PGA_cap BFI33_19445 SM00354 helix_turn _helix lactose operon repressor BFI33_19460 SM00382 ATPases associated with a variety of cellular activities BFI33_19475 SM00287 Bacterial SH3 domain homologues BFI33_19530 SM00903 Flavin reductase like domain BFI33_19545 SM00344 helix_turn_helix ASNC type BFI33_19605 SM00984 UDP binding domain BFI33_19635 SM00487 DEAD-like helicases superfamily BFI33_19635 SM00490 helicase superfamily c-terminal domain BFI33_19645 SM00420 helix_turn_helix, Deoxyribose operon repressor BFI33_19645 SM01134 BFI33_19645 BFI33_19670 SM00387 Histidine kinase-like ATPases BFI33_19685 SM00028 Tetratricopeptide repeats BFI33_19710 SM00347 helix_turn_helix multiple antibiotic resistance protein BFI33_19720 SM00710 Parallel beta-helix repeats BFI33_19720 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses BFI33_19750 SM00938 Nitrogen regulatory protein P-II BFI33_19755 SM00014 Acid phosphatase homologues BFI33_19790 SM00155 Phospholipase D. Active site motifs. BFI33_19795 SM00422 helix_turn_helix, mercury resistance BFI33_19845 SM00028 Tetratricopeptide repeats BFI33_19850 SM00729 Elongator protein 3, MiaB family, Radical SAM BFI33_19865 SM00327 von Willebrand factor (vWF) type A domain BFI33_19875 SM00327 von Willebrand factor (vWF) type A domain BFI33_19910 SM00382 ATPases associated with a variety of cellular activities BFI33_19975 SM00226 Low molecular weight phosphatase family BFI33_20015 SM00937 BFI33_20015 BFI33_20035 SM00919 Malic enzyme, NAD binding domain BFI33_20035 SM01274 BFI33_20035 BFI33_20050 SM00357 Cold shock protein domain BFI33_20050 SM00382 ATPases associated with a variety of cellular activities BFI33_20050 SM00959 Rho termination factor, N-terminal domain BFI33_20080 SM00448 cheY-homologous receiver domain BFI33_20110 SM00155 Phospholipase D. Active site motifs. BFI33_20130 SM00382 ATPases associated with a variety of cellular activities BFI33_20135 SM00155 Phospholipase D. Active site motifs. BFI33_20155 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BFI33_20170 SM00100 Cyclic nucleotide-monophosphate binding domain BFI33_20170 SM00419 helix_turn_helix, cAMP Regulatory protein BFI33_20180 SM00836 DALR anticodon binding domain BFI33_20180 SM01016 Arginyl tRNA synthetase N terminal dom BFI33_20195 SM00729 Elongator protein 3, MiaB family, Radical SAM BFI33_20245 SM00028 Tetratricopeptide repeats BFI33_20290 SM00347 helix_turn_helix multiple antibiotic resistance protein BFI33_20295 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BFI33_20320 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BFI33_20415 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BFI33_20455 SM00858 BFI33_20455 BFI33_20510 SM00986 Uracil DNA glycosylase superfamily BFI33_20510 SM00987 UreE urease accessory protein, C-terminal domain BFI33_20545 SM00640 Glycosyl hydrolases family 32 BFI33_20560 SM01061 CAT RNA binding domain BFI33_20710 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BFI33_20740 SM01061 CAT RNA binding domain BFI33_20755 SM00347 helix_turn_helix multiple antibiotic resistance protein BFI33_20760 SM00363 S4 RNA-binding domain BFI33_20770 SM00954 Region found in RelA / SpoT proteins BFI33_20855 SM01060 BFI33_20855 BFI33_20870 SM00382 ATPases associated with a variety of cellular activities BFI33_20905 SM00382 ATPases associated with a variety of cellular activities BFI33_20910 SM00382 ATPases associated with a variety of cellular activities BFI33_20945 SM00382 ATPases associated with a variety of cellular activities BFI33_20995 SM00421 helix_turn_helix, Lux Regulon BFI33_20995 SM00448 cheY-homologous receiver domain BFI33_21030 SM00822 BFI33_21030 BFI33_21035 SM00882 Coenzyme A transferase BFI33_21040 SM00882 Coenzyme A transferase BFI33_21080 SM01060 BFI33_21080 BFI33_21095 SM01061 CAT RNA binding domain BFI33_21110 SM00487 DEAD-like helicases superfamily BFI33_21110 SM00490 helicase superfamily c-terminal domain BFI33_21200 SM00860 SMI1 / KNR4 family BFI33_21260 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BFI33_21270 SM01133 BFI33_21270 BFI33_21300 SM00382 ATPases associated with a variety of cellular activities BFI33_21310 SM00062 Bacterial periplasmic substrate-binding proteins BFI33_21380 SM00382 ATPases associated with a variety of cellular activities BFI33_21385 SM00387 Histidine kinase-like ATPases BFI33_21390 SM00448 cheY-homologous receiver domain BFI33_21390 SM00862 Transcriptional regulatory protein, C terminal BFI33_21445 SM00420 helix_turn_helix, Deoxyribose operon repressor BFI33_21445 SM01134 BFI33_21445 BFI33_21470 SM00387 Histidine kinase-like ATPases BFI33_21500 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. BFI33_21530 SM00564 beta-propeller repeat BFI33_21565 SM00347 helix_turn_helix multiple antibiotic resistance protein BFI33_21590 SM00345 helix_turn_helix gluconate operon transcriptional repressor BFI33_21590 SM00895 BFI33_21590 BFI33_21605 SM01350 BFI33_21605 BFI33_21630 SM00345 helix_turn_helix gluconate operon transcriptional repressor BFI33_21630 SM00866 BFI33_21630 BFI33_21645 SM00382 ATPases associated with a variety of cellular activities BFI33_21755 SM00091 PAS domain BFI33_21755 SM00382 ATPases associated with a variety of cellular activities BFI33_21770 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BFI33_21775 SM00849 Metallo-beta-lactamase superfamily BFI33_21790 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BFI33_21790 SM00091 PAS domain BFI33_21790 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BFI33_21790 SM00387 Histidine kinase-like ATPases BFI33_21790 SM00388 His Kinase A (phosphoacceptor) domain BFI33_21795 SM00448 cheY-homologous receiver domain BFI33_21795 SM00862 Transcriptional regulatory protein, C terminal BFI33_21820 SM00788 Adenylosuccinate synthetase BFI33_21830 SM00382 ATPases associated with a variety of cellular activities BFI33_21870 SM00267 diguanylate cyclase BFI33_21895 SM01131 BFI33_21895 BFI33_21950 SM00382 ATPases associated with a variety of cellular activities BFI33_21990 SM00849 Metallo-beta-lactamase superfamily BFI33_21995 SM00347 helix_turn_helix multiple antibiotic resistance protein BFI33_22035 SM00422 helix_turn_helix, mercury resistance BFI33_22060 SM01266 BFI33_22060 BFI33_22070 SM00354 helix_turn _helix lactose operon repressor BFI33_22100 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BFI33_22120 SM00470 ParB-like nuclease domain BFI33_22135 SM00470 ParB-like nuclease domain BFI33_22145 SM01228 BFI33_22145 BFI33_22155 SM00322 K homology RNA-binding domain BFI33_22155 SM00393 Putative single-stranded nucleic acids-binding domain BFI33_22155 SM01245 BFI33_22155