locus-tag class description D9C12_00010 PF13732 Domain of unknown function (DUF4162) D9C12_00010 PF00005 ABC transporter D9C12_00015 PF13396 Phospholipase_D-nuclease N-terminal D9C12_00025 PF17280 Family of unknown function (DUF5345) D9C12_00030 PF04542 Sigma-70 region 2 D9C12_00030 PF08281 Sigma-70, region 4 D9C12_00035 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin D9C12_00040 PF01256 Carbohydrate kinase D9C12_00045 PF00664 ABC transporter transmembrane region D9C12_00045 PF00005 ABC transporter D9C12_00050 PF00005 ABC transporter D9C12_00050 PF00664 ABC transporter transmembrane region D9C12_00055 PF02322 Cytochrome bd terminal oxidase subunit II D9C12_00060 PF01654 Cytochrome bd terminal oxidase subunit I D9C12_00065 PF03390 2-hydroxycarboxylate transporter family D9C12_00070 PF01435 Peptidase family M48 D9C12_00080 PF01522 Polysaccharide deacetylase D9C12_00085 PF03459 TOBE domain D9C12_00085 PF00005 ABC transporter D9C12_00085 PF17912 MalK OB fold domain D9C12_00090 PF13556 PucR C-terminal helix-turn-helix domain D9C12_00095 PF00171 Aldehyde dehydrogenase family D9C12_00100 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) D9C12_00100 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 D9C12_00110 PF16363 GDP-mannose 4,6 dehydratase D9C12_00125 PF00196 Bacterial regulatory proteins, luxR family D9C12_00125 PF00072 Response regulator receiver domain D9C12_00130 PF07687 Peptidase dimerisation domain D9C12_00130 PF01546 Peptidase family M20/M25/M40 D9C12_00140 PF04525 LURP-one-related D9C12_00145 PF01717 Cobalamin-independent synthase, Catalytic domain D9C12_00150 PF01717 Cobalamin-independent synthase, Catalytic domain D9C12_00160 PF01144 Coenzyme A transferase D9C12_00165 PF01144 Coenzyme A transferase D9C12_00175 PF08241 Methyltransferase domain D9C12_00180 PF07662 Na+ dependent nucleoside transporter C-terminus D9C12_00180 PF01773 Na+ dependent nucleoside transporter N-terminus D9C12_00195 PF00199 Catalase D9C12_00195 PF18011 C-terminal domain found in long catalases D9C12_00195 PF06628 Catalase-related immune-responsive D9C12_00200 PF03600 Citrate transporter D9C12_00205 PF00722 Glycosyl hydrolases family 16 D9C12_00210 PF03123 CAT RNA binding domain D9C12_00210 PF00874 PRD domain D9C12_00225 PF11700 Vacuole effluxer Atg22 like D9C12_00230 PF00270 DEAD/DEAH box helicase D9C12_00230 PF03880 DbpA RNA binding domain D9C12_00230 PF00271 Helicase conserved C-terminal domain D9C12_00235 PF13472 GDSL-like Lipase/Acylhydrolase family D9C12_00250 PF14176 YxiJ-like protein D9C12_00345 PF14176 YxiJ-like protein D9C12_00350 PF05593 RHS Repeat D9C12_00360 PF10014 2OG-Fe dioxygenase D9C12_00365 PF00582 Universal stress protein family D9C12_00375 PF18593 CdiI immunity protein D9C12_00385 PF14449 Pre-toxin TG D9C12_00385 PF04740 LXG domain of WXG superfamily D9C12_00395 PF16888 Domain of unknown function (DUF5082) D9C12_00400 PF08463 EcoEI R protein C-terminal D9C12_00400 PF04851 Type III restriction enzyme, res subunit D9C12_00400 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) D9C12_00400 PF00271 Helicase conserved C-terminal domain D9C12_00405 PF00293 NUDIX domain D9C12_00410 PF13087 AAA domain D9C12_00410 PF13086 AAA domain D9C12_00410 PF13195 Protein of unknown function (DUF4011) D9C12_00415 PF16369 C-terminal lipocalin-like domain D9C12_00415 PF04616 Glycosyl hydrolases family 43 D9C12_00430 PF02885 Glycosyl transferase family, helical bundle domain D9C12_00430 PF00591 Glycosyl transferase family, a/b domain D9C12_00430 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain D9C12_00435 PF07662 Na+ dependent nucleoside transporter C-terminus D9C12_00435 PF01773 Na+ dependent nucleoside transporter N-terminus D9C12_00440 PF01791 DeoC/LacD family aldolase D9C12_00445 PF04198 Putative sugar-binding domain D9C12_00450 PF06724 Domain of Unknown Function (DUF1206) D9C12_00455 PF04346 Ethanolamine utilisation protein, EutH D9C12_00460 PF03972 MmgE/PrpD family D9C12_00470 PF00005 ABC transporter D9C12_00475 PF00528 Binding-protein-dependent transport system inner membrane component D9C12_00480 PF00497 Bacterial extracellular solute-binding proteins, family 3 D9C12_00495 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family D9C12_00510 PF11631 Protein of unknown function (DUF3255) D9C12_00540 PF01497 Periplasmic binding protein D9C12_00545 PF06486 Protein of unknown function (DUF1093) D9C12_00550 PF02687 FtsX-like permease family D9C12_00555 PF00005 ABC transporter D9C12_00560 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D9C12_00565 PF00486 Transcriptional regulatory protein, C terminal D9C12_00565 PF00072 Response regulator receiver domain D9C12_00570 PF01116 Fructose-bisphosphate aldolase class-II D9C12_00575 PF01261 Xylose isomerase-like TIM barrel D9C12_00580 PF01261 Xylose isomerase-like TIM barrel D9C12_00585 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D9C12_00585 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D9C12_00590 PF07690 Major Facilitator Superfamily D9C12_00595 PF01261 Xylose isomerase-like TIM barrel D9C12_00600 PF00205 Thiamine pyrophosphate enzyme, central domain D9C12_00600 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D9C12_00600 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D9C12_00605 PF00294 pfkB family carbohydrate kinase D9C12_00610 PF04962 KduI/IolB family D9C12_00615 PF00171 Aldehyde dehydrogenase family D9C12_00620 PF08220 DeoR-like helix-turn-helix domain D9C12_00620 PF00455 DeoR C terminal sensor domain D9C12_00625 PF00248 Aldo/keto reductase family D9C12_00655 PF00183 Hsp90 protein D9C12_00670 PF00440 Bacterial regulatory proteins, tetR family D9C12_00675 PF00171 Aldehyde dehydrogenase family D9C12_00680 PF06271 RDD family D9C12_00685 PF17369 Family of unknown function (DUF5391) D9C12_00690 PF06271 RDD family D9C12_00695 PF04235 Protein of unknown function (DUF418) D9C12_00700 PF07883 Cupin domain D9C12_00705 PF00440 Bacterial regulatory proteins, tetR family D9C12_00710 PF00106 short chain dehydrogenase D9C12_00715 PF01047 MarR family D9C12_00720 PF03788 LrgA family D9C12_00725 PF04172 LrgB-like family D9C12_00730 PF04230 Polysaccharide pyruvyl transferase D9C12_00735 PF02595 Glycerate kinase family D9C12_00740 PF07729 FCD domain D9C12_00740 PF00392 Bacterial regulatory proteins, gntR family D9C12_00745 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D9C12_00745 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D9C12_00750 PF02447 GntP family permease D9C12_00755 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain D9C12_00755 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D9C12_00760 PF00578 AhpC/TSA family D9C12_00765 PF07992 Pyridine nucleotide-disulphide oxidoreductase D9C12_00765 PF13192 Thioredoxin domain D9C12_00770 PF00232 Glycosyl hydrolase family 1 D9C12_00775 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 D9C12_00785 PF07702 UTRA domain D9C12_00785 PF00392 Bacterial regulatory proteins, gntR family D9C12_00795 PF00005 ABC transporter D9C12_00800 PF06874 Firmicute fructose-1,6-bisphosphatase D9C12_00815 PF00011 Hsp20/alpha crystallin family D9C12_00830 PF01695 IstB-like ATP binding protein D9C12_00835 PF00665 Integrase core domain D9C12_00850 PF00580 UvrD/REP helicase N-terminal domain D9C12_00850 PF13361 UvrD-like helicase C-terminal domain D9C12_00895 PF02590 Predicted SPOUT methyltransferase D9C12_00900 PF14116 YyzF-like protein D9C12_00910 PF08240 Alcohol dehydrogenase GroES-like domain D9C12_00910 PF00107 Zinc-binding dehydrogenase D9C12_00920 PF10852 Protein of unknown function (DUF2651) D9C12_00935 PF00583 Acetyltransferase (GNAT) family D9C12_00950 PF00491 Arginase family D9C12_00955 PF00324 Amino acid permease D9C12_00960 PF00202 Aminotransferase class-III D9C12_00975 PF17418 Sporulation delaying protein SdpA D9C12_00980 PF07853 Protein of unknown function (DUF1648) D9C12_00980 PF13630 SdpI/YhfL protein family D9C12_00985 PF01022 Bacterial regulatory protein, arsR family D9C12_00990 PF02954 Bacterial regulatory protein, Fis family D9C12_00990 PF13426 PAS domain D9C12_00990 PF00158 Sigma-54 interaction domain D9C12_01005 PF13180 PDZ domain D9C12_01010 PF00753 Metallo-beta-lactamase superfamily D9C12_01015 PF09648 YycH protein D9C12_01020 PF07435 YycH protein D9C12_01025 PF00672 HAMP domain D9C12_01025 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D9C12_01025 PF13426 PAS domain D9C12_01025 PF00512 His Kinase A (phospho-acceptor) domain D9C12_01030 PF00486 Transcriptional regulatory protein, C terminal D9C12_01030 PF00072 Response regulator receiver domain D9C12_01055 PF00709 Adenylosuccinate synthetase D9C12_01065 PF00772 DnaB-like helicase N terminal domain D9C12_01065 PF03796 DnaB-like helicase C terminal domain D9C12_01070 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) D9C12_01080 PF14174 YycC-like protein D9C12_01085 PF07690 Major Facilitator Superfamily D9C12_01090 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase D9C12_01095 PF01281 Ribosomal protein L9, N-terminal domain D9C12_01095 PF03948 Ribosomal protein L9, C-terminal domain D9C12_01100 PF01368 DHH family D9C12_01100 PF02272 DHHA1 domain D9C12_01120 PF01638 HxlR-like helix-turn-helix D9C12_01125 PF02833 DHHA2 domain D9C12_01125 PF01368 DHH family D9C12_01145 PF06445 GyrI-like small molecule binding domain D9C12_01145 PF13411 MerR HTH family regulatory protein D9C12_01155 PF13474 SnoaL-like domain D9C12_01160 PF00805 Pentapeptide repeats (8 copies) D9C12_01175 PF01047 MarR family D9C12_01180 PF13673 Acetyltransferase (GNAT) domain D9C12_01200 PF01872 RibD C-terminal domain D9C12_01210 PF06445 GyrI-like small molecule binding domain D9C12_01215 PF03190 Protein of unknown function, DUF255 D9C12_01220 PF02517 CPBP intramembrane metalloprotease D9C12_01225 PF00083 Sugar (and other) transporter D9C12_01230 PF12464 Maltose acetyltransferase D9C12_01230 PF14602 Hexapeptide repeat of succinyl-transferase D9C12_01235 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D9C12_01245 PF03372 Endonuclease/Exonuclease/phosphatase family D9C12_01250 PF01084 Ribosomal protein S18 D9C12_01255 PF00436 Single-strand binding protein family D9C12_01260 PF01250 Ribosomal protein S6 D9C12_01265 PF06071 Protein of unknown function (DUF933) D9C12_01265 PF01926 50S ribosome-binding GTPase D9C12_01270 PF01568 Molydopterin dinucleotide binding domain D9C12_01270 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D9C12_01270 PF00384 Molybdopterin oxidoreductase D9C12_01275 PF06107 Bacterial protein of unknown function (DUF951) D9C12_01285 PF06866 Protein of unknown function (DUF1256) D9C12_01295 PF02195 ParB-like nuclease domain D9C12_01295 PF17762 HTH domain found in ParB protein D9C12_01300 PF13614 AAA domain D9C12_01305 PF06713 Bacterial PH domain D9C12_01310 PF17762 HTH domain found in ParB protein D9C12_01310 PF02195 ParB-like nuclease domain D9C12_01315 PF02527 rRNA small subunit methyltransferase G D9C12_01320 PF01134 Glucose inhibited division protein A D9C12_01320 PF13932 GidA associated domain D9C12_01325 PF10396 GTP-binding protein TrmE N-terminus D9C12_01325 PF12631 MnmE helical domain D9C12_01325 PF01926 50S ribosome-binding GTPase D9C12_01330 PF14804 Jag N-terminus D9C12_01330 PF01424 R3H domain D9C12_01335 PF02096 60Kd inner membrane protein D9C12_01340 PF00825 Ribonuclease P D9C12_01345 PF00468 Ribosomal protein L34 D9C12_01350 PF00308 Bacterial dnaA protein D9C12_01350 PF11638 DnaA N-terminal domain D9C12_01350 PF08299 Bacterial dnaA protein helix-turn-helix D9C12_01355 PF02767 DNA polymerase III beta subunit, central domain D9C12_01355 PF00712 DNA polymerase III beta subunit, N-terminal domain D9C12_01355 PF02768 DNA polymerase III beta subunit, C-terminal domain D9C12_01365 PF02463 RecF/RecN/SMC N terminal domain D9C12_01370 PF04025 Domain of unknown function (DUF370) D9C12_01375 PF01751 Toprim domain D9C12_01375 PF00986 DNA gyrase B subunit, carboxyl terminus D9C12_01375 PF00204 DNA gyrase B D9C12_01375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D9C12_01380 PF03989 DNA gyrase C-terminal domain, beta-propeller D9C12_01380 PF00521 DNA gyrase/topoisomerase IV, subunit A D9C12_01410 PF14175 YaaC-like Protein D9C12_01415 PF00478 IMP dehydrogenase / GMP reductase domain D9C12_01415 PF00571 CBS domain D9C12_01420 PF00768 D-alanyl-D-alanine carboxypeptidase D9C12_01420 PF07943 Penicillin-binding protein 5, C-terminal domain D9C12_01425 PF01680 SOR/SNZ family D9C12_01430 PF01174 SNO glutamine amidotransferase family D9C12_01435 PF02403 Seryl-tRNA synthetase N-terminal domain D9C12_01435 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D9C12_01445 PF01712 Deoxynucleoside kinase D9C12_01450 PF01712 Deoxynucleoside kinase D9C12_01455 PF00704 Glycosyl hydrolases family 18 D9C12_01455 PF01476 LysM domain D9C12_01460 PF00857 Isochorismatase family D9C12_01465 PF14437 MafB19-like deaminase D9C12_01475 PF12169 DNA polymerase III subunits gamma and tau domain III D9C12_01480 PF02575 YbaB/EbfC DNA-binding family D9C12_01485 PF13662 Toprim domain D9C12_01485 PF02132 RecR protein D9C12_01490 PF10704 Protein of unknown function (DUF2508) D9C12_01495 PF07441 SigmaK-factor processing regulatory protein BofA D9C12_01525 PF10764 Inhibitor of sigma-G Gin D9C12_01530 PF10112 5-bromo-4-chloroindolyl phosphate hydrolysis protein D9C12_01535 PF05816 Toxic anion resistance protein (TelA) D9C12_01540 PF01276 Orn/Lys/Arg decarboxylase, major domain D9C12_01540 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain D9C12_01545 PF02223 Thymidylate kinase D9C12_01550 PF06153 Cyclic-di-AMP receptor D9C12_01555 PF03885 Protein of unknown function (DUF327) D9C12_01560 PF09115 DNA polymerase III, delta subunit, C terminal D9C12_01565 PF04468 PSP1 C-terminal conserved region D9C12_01570 PF06156 Initiation control protein YabA D9C12_01575 PF05175 Methyltransferase small domain D9C12_01580 PF01541 GIY-YIG catalytic domain D9C12_01585 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D9C12_01590 PF18277 AbrB C-terminal domain D9C12_01590 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin D9C12_01595 PF09334 tRNA synthetases class I (M) D9C12_01595 PF01588 Putative tRNA binding domain D9C12_01595 PF08264 Anticodon-binding domain of tRNA D9C12_01600 PF01026 TatD related DNase D9C12_01605 PF06725 3D domain D9C12_01605 PF03990 G5-linked-Ubiquitin-like domain D9C12_01605 PF07501 G5 domain D9C12_01610 PF13331 Domain of unknown function (DUF4093) D9C12_01610 PF13662 Toprim domain D9C12_01615 PF00398 Ribosomal RNA adenine dimethylase D9C12_01620 PF05582 YabG peptidase U57 D9C12_01625 PF06257 Biofilm formation stimulator VEG D9C12_01630 PF00269 Small, acid-soluble spore proteins, alpha/beta type D9C12_01635 PF00288 GHMP kinases N terminal domain D9C12_01635 PF08544 GHMP kinases C terminal D9C12_01640 PF09182 Bacterial purine repressor, N-terminal D9C12_01640 PF00156 Phosphoribosyl transferase domain D9C12_01645 PF01042 Endoribonuclease L-PSP D9C12_01650 PF04026 SpoVG D9C12_01655 PF00483 Nucleotidyl transferase D9C12_01655 PF00132 Bacterial transferase hexapeptide (six repeats) D9C12_01660 PF14572 Phosphoribosyl synthetase-associated domain D9C12_01660 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase D9C12_01665 PF01386 Ribosomal L25p family D9C12_01665 PF14693 Ribosomal protein TL5, C-terminal domain D9C12_01670 PF01195 Peptidyl-tRNA hydrolase D9C12_01675 PF10955 Protein of unknown function (DUF2757) D9C12_01680 PF00270 DEAD/DEAH box helicase D9C12_01680 PF17757 UvrB interaction domain D9C12_01680 PF02559 CarD-like/TRCF domain D9C12_01680 PF03461 TRCF domain D9C12_01680 PF00271 Helicase conserved C-terminal domain D9C12_01685 PF15714 Stage V sporulation protein T C-terminal, transcription factor D9C12_01685 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin D9C12_01690 PF01943 Polysaccharide biosynthesis protein D9C12_01690 PF14667 Polysaccharide biosynthesis C-terminal domain D9C12_01695 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D9C12_01695 PF03819 MazG nucleotide pyrophosphohydrolase domain D9C12_01700 PF01479 S4 domain D9C12_01705 PF07873 YabP family D9C12_01710 PF09578 Spore cortex protein YabQ (Spore_YabQ) D9C12_01715 PF04977 Septum formation initiator D9C12_01720 PF00575 S1 RNA binding domain D9C12_01735 PF07228 Stage II sporulation protein E (SpoIIE) D9C12_01740 PF00092 von Willebrand factor type A domain D9C12_01745 PF00069 Protein kinase domain D9C12_01750 PF01171 PP-loop family D9C12_01750 PF11734 TilS substrate C-terminal domain D9C12_01750 PF09179 TilS substrate binding domain D9C12_01760 PF17862 AAA+ lid domain D9C12_01760 PF06480 FtsH Extracellular D9C12_01760 PF01434 Peptidase family M41 D9C12_01760 PF00004 ATPase family associated with various cellular activities (AAA) D9C12_01765 PF03309 Type III pantothenate kinase D9C12_01770 PF01430 Hsp33 protein D9C12_01775 PF13145 PPIC-type PPIASE domain D9C12_01780 PF00291 Pyridoxal-phosphate dependent enzyme D9C12_01795 PF00425 chorismate binding enzyme D9C12_01795 PF04715 Anthranilate synthase component I, N terminal region D9C12_01800 PF00117 Glutamine amidotransferase class-I D9C12_01805 PF01063 Amino-transferase class IV D9C12_01810 PF00809 Pterin binding enzyme D9C12_01815 PF02152 Dihydroneopterin aldolase D9C12_01820 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) D9C12_01825 PF01381 Helix-turn-helix D9C12_01830 PF01207 Dihydrouridine synthase (Dus) D9C12_01835 PF01336 OB-fold nucleic acid binding domain D9C12_01835 PF00152 tRNA synthetases class II (D, K and N) D9C12_01915 PF05848 CtsR N-terminal HTH domain D9C12_01915 PF17727 CtsR C-terminal dimerization domain D9C12_01920 PF02151 UvrB/uvrC motif D9C12_01925 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain D9C12_01930 PF07724 AAA domain (Cdc48 subfamily) D9C12_01930 PF17871 AAA lid domain D9C12_01930 PF02861 Clp amino terminal domain, pathogenicity island component D9C12_01930 PF10431 C-terminal, D2-small domain, of ClpB protein D9C12_01930 PF00004 ATPase family associated with various cellular activities (AAA) D9C12_01935 PF18073 Rubredoxin metal binding domain D9C12_01940 PF02457 DisA bacterial checkpoint controller nucleotide-binding D9C12_01940 PF10635 DisA bacterial checkpoint controller linker region D9C12_01950 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase D9C12_01955 PF02542 YgbB family D9C12_01960 PF00749 tRNA synthetases class I (E and Q), catalytic domain D9C12_01970 PF00132 Bacterial transferase hexapeptide (six repeats) D9C12_01970 PF06426 Serine acetyltransferase, N-terminal D9C12_01975 PF01406 tRNA synthetases class I (C) catalytic domain D9C12_01975 PF09190 DALR domain D9C12_01980 PF00636 Ribonuclease III domain D9C12_01985 PF08032 RNA 2'-O ribose methyltransferase substrate binding D9C12_01985 PF00588 SpoU rRNA Methylase family D9C12_01990 PF05991 YacP-like NYN domain D9C12_01995 PF04542 Sigma-70 region 2 D9C12_01995 PF08281 Sigma-70, region 4 D9C12_02000 PF00471 Ribosomal protein L33 D9C12_02005 PF00584 SecE/Sec61-gamma subunits of protein translocation complex D9C12_02010 PF00467 KOW motif D9C12_02010 PF02357 Transcription termination factor nusG D9C12_02015 PF00298 Ribosomal protein L11, RNA binding domain D9C12_02015 PF03946 Ribosomal protein L11, N-terminal domain D9C12_02020 PF00687 Ribosomal protein L1p/L10e family D9C12_02025 PF00466 Ribosomal protein L10 D9C12_02030 PF00542 Ribosomal protein L7/L12 C-terminal domain D9C12_02030 PF16320 Ribosomal protein L7/L12 dimerisation domain D9C12_02035 PF05175 Methyltransferase small domain D9C12_02040 PF04565 RNA polymerase Rpb2, domain 3 D9C12_02040 PF04561 RNA polymerase Rpb2, domain 2 D9C12_02040 PF04563 RNA polymerase beta subunit D9C12_02040 PF00562 RNA polymerase Rpb2, domain 6 D9C12_02040 PF10385 RNA polymerase beta subunit external 1 domain D9C12_02040 PF04560 RNA polymerase Rpb2, domain 7 D9C12_02045 PF04998 RNA polymerase Rpb1, domain 5 D9C12_02045 PF05000 RNA polymerase Rpb1, domain 4 D9C12_02045 PF04983 RNA polymerase Rpb1, domain 3 D9C12_02045 PF00623 RNA polymerase Rpb1, domain 2 D9C12_02045 PF04997 RNA polymerase Rpb1, domain 1 D9C12_02050 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family D9C12_02055 PF00164 Ribosomal protein S12/S23 D9C12_02060 PF00177 Ribosomal protein S7p/S5e D9C12_02065 PF03144 Elongation factor Tu domain 2 D9C12_02065 PF00009 Elongation factor Tu GTP binding domain D9C12_02065 PF03764 Elongation factor G, domain IV D9C12_02065 PF14492 Elongation Factor G, domain II D9C12_02065 PF00679 Elongation factor G C-terminus D9C12_02070 PF00009 Elongation factor Tu GTP binding domain D9C12_02070 PF03144 Elongation factor Tu domain 2 D9C12_02070 PF03143 Elongation factor Tu C-terminal domain D9C12_02075 PF12146 Serine aminopeptidase, S33 D9C12_02080 PF00338 Ribosomal protein S10p/S20e D9C12_02085 PF00297 Ribosomal protein L3 D9C12_02090 PF00573 Ribosomal protein L4/L1 family D9C12_02095 PF00276 Ribosomal protein L23 D9C12_02100 PF03947 Ribosomal Proteins L2, C-terminal domain D9C12_02100 PF00181 Ribosomal Proteins L2, RNA binding domain D9C12_02105 PF00203 Ribosomal protein S19 D9C12_02110 PF00237 Ribosomal protein L22p/L17e D9C12_02115 PF07650 KH domain D9C12_02115 PF00189 Ribosomal protein S3, C-terminal domain D9C12_02120 PF00252 Ribosomal protein L16p/L10e D9C12_02125 PF00831 Ribosomal L29 protein D9C12_02130 PF00366 Ribosomal protein S17 D9C12_02135 PF00238 Ribosomal protein L14p/L23e D9C12_02140 PF00467 KOW motif D9C12_02140 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 D9C12_02145 PF00281 Ribosomal protein L5 D9C12_02145 PF00673 ribosomal L5P family C-terminus D9C12_02150 PF00253 Ribosomal protein S14p/S29e D9C12_02155 PF00410 Ribosomal protein S8 D9C12_02160 PF00347 Ribosomal protein L6 D9C12_02165 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast D9C12_02170 PF03719 Ribosomal protein S5, C-terminal domain D9C12_02170 PF00333 Ribosomal protein S5, N-terminal domain D9C12_02175 PF00327 Ribosomal protein L30p/L7e D9C12_02180 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A D9C12_02185 PF00344 SecY translocase D9C12_02190 PF05191 Adenylate kinase, active site lid D9C12_02195 PF00557 Metallopeptidase family M24 D9C12_02205 PF01176 Translation initiation factor 1A / IF-1 D9C12_02210 PF00444 Ribosomal protein L36 D9C12_02215 PF00416 Ribosomal protein S13/S18 D9C12_02220 PF00411 Ribosomal protein S11 D9C12_02225 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain D9C12_02225 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain D9C12_02225 PF01000 RNA polymerase Rpb3/RpoA insert domain D9C12_02230 PF01196 Ribosomal protein L17 D9C12_02235 PF00005 ABC transporter D9C12_02240 PF00005 ABC transporter D9C12_02245 PF02361 Cobalt transport protein D9C12_02250 PF01416 tRNA pseudouridine synthase D9C12_02255 PF00572 Ribosomal protein L13 D9C12_02260 PF00380 Ribosomal protein S9/S16 D9C12_02265 PF08241 Methyltransferase domain D9C12_02270 PF10730 Protein of unknown function (DUF2521) D9C12_02275 PF01520 N-acetylmuramoyl-L-alanine amidase D9C12_02280 PF10609 NUBPL iron-transfer P-loop NTPase D9C12_02285 PF17898 Spore germination GerD central core domain D9C12_02290 PF14089 KinB-signalling pathway activation in sporulation D9C12_02295 PF01522 Polysaccharide deacetylase D9C12_02395 PF01740 STAS domain D9C12_02395 PF00916 Sulfate permease family D9C12_02400 PF01758 Sodium Bile acid symporter family D9C12_02405 PF00756 Putative esterase D9C12_02410 PF01032 FecCD transport family D9C12_02415 PF01032 FecCD transport family D9C12_02420 PF01497 Periplasmic binding protein D9C12_02425 PF12833 Helix-turn-helix domain D9C12_02425 PF01497 Periplasmic binding protein D9C12_02435 PF01915 Glycosyl hydrolase family 3 C-terminal domain D9C12_02435 PF00933 Glycosyl hydrolase family 3 N terminal domain D9C12_02440 PF00144 Beta-lactamase D9C12_02445 PF02378 Phosphotransferase system, EIIC D9C12_02445 PF00367 phosphotransferase system, EIIB D9C12_02450 PF01380 SIS domain D9C12_02450 PF01418 Helix-turn-helix domain, rpiR family D9C12_02455 PF01380 SIS domain D9C12_02465 PF04463 Protein of unknown function (DUF523) D9C12_02495 PF04542 Sigma-70 region 2 D9C12_02495 PF08281 Sigma-70, region 4 D9C12_02500 PF13490 Putative zinc-finger D9C12_02505 PF02457 DisA bacterial checkpoint controller nucleotide-binding D9C12_02510 PF07949 YbbR-like protein D9C12_02515 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D9C12_02515 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D9C12_02515 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D9C12_02515 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D9C12_02520 PF01380 SIS domain D9C12_02525 PF00550 Phosphopantetheine attachment site D9C12_02525 PF14765 Polyketide synthase dehydratase D9C12_02525 PF08659 KR domain D9C12_02525 PF02801 Beta-ketoacyl synthase, C-terminal domain D9C12_02525 PF00698 Acyl transferase domain D9C12_02525 PF00109 Beta-ketoacyl synthase, N-terminal domain D9C12_02525 PF16197 Ketoacyl-synthetase C-terminal extension D9C12_02530 PF08659 KR domain D9C12_02530 PF00109 Beta-ketoacyl synthase, N-terminal domain D9C12_02530 PF16197 Ketoacyl-synthetase C-terminal extension D9C12_02530 PF00698 Acyl transferase domain D9C12_02530 PF14765 Polyketide synthase dehydratase D9C12_02530 PF14765 Polyketide synthase dehydratase D9C12_02530 PF00550 Phosphopantetheine attachment site D9C12_02530 PF08659 KR domain D9C12_02530 PF02801 Beta-ketoacyl synthase, C-terminal domain D9C12_02530 PF00109 Beta-ketoacyl synthase, N-terminal domain D9C12_02530 PF02801 Beta-ketoacyl synthase, C-terminal domain D9C12_02530 PF00698 Acyl transferase domain D9C12_02530 PF16197 Ketoacyl-synthetase C-terminal extension D9C12_02530 PF00550 Phosphopantetheine attachment site D9C12_02540 PF00753 Metallo-beta-lactamase superfamily D9C12_02550 PF00361 Proton-conducting membrane transporter D9C12_02550 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus D9C12_02555 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) D9C12_02570 PF10057 Uncharacterized conserved protein (DUF2294) D9C12_02590 PF00069 Protein kinase domain D9C12_02600 PF16226 Domain of unknown function (DUF4885) D9C12_02605 PF00324 Amino acid permease D9C12_02615 PF17334 Minor curli fiber component A D9C12_02620 PF17340 Family of unknown function (DUF5370) D9C12_02625 PF00905 Penicillin binding protein transpeptidase domain D9C12_02630 PF00067 Cytochrome P450 D9C12_02640 PF13520 Amino acid permease D9C12_02645 PF03009 Glycerophosphoryl diester phosphodiesterase family D9C12_02650 PF07690 Major Facilitator Superfamily D9C12_02660 PF10852 Protein of unknown function (DUF2651) D9C12_02665 PF01047 MarR family D9C12_02665 PF00583 Acetyltransferase (GNAT) family D9C12_02685 PF08924 Domain of unknown function (DUF1906) D9C12_02685 PF01471 Putative peptidoglycan binding domain D9C12_02695 PF12833 Helix-turn-helix domain D9C12_02695 PF02311 AraC-like ligand binding domain D9C12_02705 PF04688 SPP1 phage holin D9C12_02710 PF05257 CHAP domain D9C12_02710 PF01476 LysM domain D9C12_02720 PF02222 ATP-grasp domain D9C12_02725 PF00089 Trypsin D9C12_02730 PF10794 Protein of unknown function (DUF2606) D9C12_02735 PF12697 Alpha/beta hydrolase family D9C12_02740 PF01066 CDP-alcohol phosphatidyltransferase D9C12_02745 PF09335 SNARE associated Golgi protein D9C12_02750 PF02666 Phosphatidylserine decarboxylase D9C12_02760 PF05139 Erythromycin esterase D9C12_02765 PF12833 Helix-turn-helix domain D9C12_02775 PF00375 Sodium:dicarboxylate symporter family D9C12_02780 PF02378 Phosphotransferase system, EIIC D9C12_02780 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 D9C12_02780 PF00367 phosphotransferase system, EIIB D9C12_02785 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase D9C12_02795 PF07853 Protein of unknown function (DUF1648) D9C12_02800 PF01063 Amino-transferase class IV D9C12_02805 PF00324 Amino acid permease D9C12_02810 PF02574 Homocysteine S-methyltransferase D9C12_02825 PF04960 Glutaminase D9C12_02830 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D9C12_02835 PF08664 YcbB domain D9C12_02835 PF00072 Response regulator receiver domain D9C12_02845 PF00701 Dihydrodipicolinate synthetase family D9C12_02850 PF00171 Aldehyde dehydrogenase family D9C12_02855 PF07690 Major Facilitator Superfamily D9C12_02860 PF13378 Enolase C-terminal domain-like D9C12_02865 PF00392 Bacterial regulatory proteins, gntR family D9C12_02865 PF07729 FCD domain D9C12_02870 PF08666 SAF domain D9C12_02870 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus D9C12_02875 PF01636 Phosphotransferase enzyme family D9C12_02880 PF15777 Tryptophan RNA-binding attenuator protein inhibitory protein D9C12_02885 PF00892 EamA-like transporter family D9C12_02890 PF00486 Transcriptional regulatory protein, C terminal D9C12_02890 PF00072 Response regulator receiver domain D9C12_02895 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D9C12_02895 PF00512 His Kinase A (phospho-acceptor) domain D9C12_02900 PF00005 ABC transporter D9C12_02915 PF10710 Protein of unknown function (DUF2512) D9C12_02920 PF07486 Cell Wall Hydrolase D9C12_02930 PF10138 vWA found in TerF C terminus D9C12_02940 PF09423 PhoD-like phosphatase D9C12_02940 PF16655 PhoD-like phosphatase, N-terminal domain D9C12_02945 PF02416 mttA/Hcf106 family D9C12_02950 PF00902 Sec-independent protein translocase protein (TatC) D9C12_02955 PF01470 Pyroglutamyl peptidase D9C12_02960 PF00266 Aminotransferase class-V D9C12_02965 PF07690 Major Facilitator Superfamily D9C12_02970 PF00440 Bacterial regulatory proteins, tetR family D9C12_02975 PF00710 Asparaginase, N-terminal D9C12_02975 PF17763 Glutaminase/Asparaginase C-terminal domain D9C12_02980 PF01674 Lipase (class 2) D9C12_02985 PF06271 RDD family D9C12_02990 PF05225 helix-turn-helix, Psq domain D9C12_02990 PF02810 SEC-C motif D9C12_02995 PF14501 GHKL domain D9C12_03000 PF00072 Response regulator receiver domain D9C12_03000 PF04397 LytTr DNA-binding domain D9C12_03005 PF00005 ABC transporter D9C12_03010 PF12679 ABC-2 family transporter protein D9C12_03025 PF11611 Domain of unknown function (DUF4352) D9C12_03025 PF17118 Domain of unknown function (DUF5105) D9C12_03035 PF16244 Domain of unknown function (DUF4901) D9C12_03040 PF16244 Domain of unknown function (DUF4901) D9C12_03045 PF13539 D-alanyl-D-alanine carboxypeptidase D9C12_03050 PF18801 response regulator aspartate phosphatase H, N terminal D9C12_03060 PF00128 Alpha amylase, catalytic domain D9C12_03065 PF01297 Zinc-uptake complex component A periplasmic D9C12_03070 PF00005 ABC transporter D9C12_03075 PF00950 ABC 3 transport family D9C12_03095 PF02342 TerD domain D9C12_03100 PF02342 TerD domain D9C12_03105 PF02342 TerD domain D9C12_03110 PF03741 Integral membrane protein TerC family D9C12_03115 PF14266 Putative component of 'biosynthetic module' D9C12_03120 PF05816 Toxic anion resistance protein (TelA) D9C12_03125 PF07690 Major Facilitator Superfamily D9C12_03135 PF07690 Major Facilitator Superfamily D9C12_03145 PF00571 CBS domain D9C12_03145 PF00005 ABC transporter D9C12_03150 PF00528 Binding-protein-dependent transport system inner membrane component D9C12_03155 PF04069 Substrate binding domain of ABC-type glycine betaine transport system D9C12_03160 PF07687 Peptidase dimerisation domain D9C12_03160 PF01546 Peptidase family M20/M25/M40 D9C12_03165 PF03606 C4-dicarboxylate anaerobic carrier D9C12_03180 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain D9C12_03180 PF00056 lactate/malate dehydrogenase, NAD binding domain D9C12_03185 PF02652 L-lactate permease D9C12_03195 PF08892 YqcI/YcgG family D9C12_03205 PF09347 Domain of unknown function (DUF1989) D9C12_03210 PF02540 NAD synthase D9C12_03225 PF01202 Shikimate kinase D9C12_03235 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D9C12_03235 PF03466 LysR substrate binding domain D9C12_03240 PF05448 Acetyl xylan esterase (AXE1) D9C12_03245 PF10127 RNA repair pathway DNA polymerase beta family D9C12_03250 PF01619 Proline dehydrogenase D9C12_03255 PF00171 Aldehyde dehydrogenase family D9C12_03260 PF00474 Sodium:solute symporter family D9C12_03265 PF17853 GGDEF-like domain D9C12_03265 PF13556 PucR C-terminal helix-turn-helix domain D9C12_03270 PF09323 Domain of unknown function (DUF1980) D9C12_03275 PF03773 Predicted permease D9C12_03280 PF00561 alpha/beta hydrolase fold D9C12_03285 PF07992 Pyridine nucleotide-disulphide oxidoreductase D9C12_03290 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D9C12_03295 PF00355 Rieske [2Fe-2S] domain D9C12_03300 PF07992 Pyridine nucleotide-disulphide oxidoreductase D9C12_03300 PF04324 BFD-like [2Fe-2S] binding domain D9C12_03300 PF01077 Nitrite and sulphite reductase 4Fe-4S domain D9C12_03300 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D9C12_03300 PF18267 Rubredoxin NAD+ reductase C-terminal domain D9C12_03305 PF01568 Molydopterin dinucleotide binding domain D9C12_03305 PF00384 Molybdopterin oxidoreductase D9C12_03305 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D9C12_03310 PF07992 Pyridine nucleotide-disulphide oxidoreductase D9C12_03310 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D9C12_03310 PF04324 BFD-like [2Fe-2S] binding domain D9C12_03310 PF18267 Rubredoxin NAD+ reductase C-terminal domain D9C12_03315 PF07690 Major Facilitator Superfamily D9C12_03325 PF03734 L,D-transpeptidase catalytic domain D9C12_03340 PF00528 Binding-protein-dependent transport system inner membrane component D9C12_03345 PF00497 Bacterial extracellular solute-binding proteins, family 3 D9C12_03355 PF06271 RDD family D9C12_03360 PF10925 Protein of unknown function (DUF2680) D9C12_03365 PF01047 MarR family D9C12_03380 PF00232 Glycosyl hydrolase family 1 D9C12_03385 PF11033 Competence protein J (ComJ) D9C12_03390 PF14040 Deoxyribonuclease NucA/NucB D9C12_03400 PF01380 SIS domain D9C12_03405 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family D9C12_03410 PF01638 HxlR-like helix-turn-helix D9C12_03415 PF00668 Condensation domain D9C12_03415 PF00550 Phosphopantetheine attachment site D9C12_03415 PF13193 AMP-binding enzyme C-terminal domain D9C12_03415 PF00501 AMP-binding enzyme D9C12_03420 PF00550 Phosphopantetheine attachment site D9C12_03420 PF00501 AMP-binding enzyme D9C12_03420 PF00668 Condensation domain D9C12_03420 PF13193 AMP-binding enzyme C-terminal domain D9C12_03425 PF13193 AMP-binding enzyme C-terminal domain D9C12_03425 PF00975 Thioesterase domain D9C12_03425 PF00668 Condensation domain D9C12_03425 PF00550 Phosphopantetheine attachment site D9C12_03425 PF00501 AMP-binding enzyme D9C12_03430 PF00975 Thioesterase domain D9C12_03435 PF07690 Major Facilitator Superfamily D9C12_03440 PF14317 YcxB-like protein D9C12_03445 PF00892 EamA-like transporter family D9C12_03455 PF00155 Aminotransferase class I and II D9C12_03455 PF00392 Bacterial regulatory proteins, gntR family D9C12_03460 PF01648 4'-phosphopantetheinyl transferase superfamily D9C12_03470 PF00005 ABC transporter D9C12_03475 PF00528 Binding-protein-dependent transport system inner membrane component D9C12_03480 PF00497 Bacterial extracellular solute-binding proteins, family 3 D9C12_03485 PF03466 LysR substrate binding domain D9C12_03485 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D9C12_03490 PF02441 Flavoprotein D9C12_03495 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase D9C12_03510 PF00561 alpha/beta hydrolase fold D9C12_03515 PF00854 POT family D9C12_03520 PF12708 Pectate lyase superfamily protein D9C12_03520 PF13229 Right handed beta helix region D9C12_03535 PF03323 Bacillus/Clostridium GerA spore germination protein D9C12_03540 PF05504 Spore germination B3/ GerAC like, C-terminal D9C12_03545 PF03845 Spore germination protein D9C12_03550 PF00005 ABC transporter D9C12_03555 PF12704 MacB-like periplasmic core domain D9C12_03555 PF02687 FtsX-like permease family D9C12_03560 PF00486 Transcriptional regulatory protein, C terminal D9C12_03560 PF00072 Response regulator receiver domain D9C12_03565 PF00672 HAMP domain D9C12_03565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D9C12_03565 PF00512 His Kinase A (phospho-acceptor) domain D9C12_03570 PF18801 response regulator aspartate phosphatase H, N terminal D9C12_03575 PF11131 Rap-phr extracellular signalling D9C12_03580 PF09680 Family of unknown function D9C12_03585 PF09680 Family of unknown function D9C12_03590 PF13840 ACT domain D9C12_03590 PF00696 Amino acid kinase family D9C12_03595 PF01032 FecCD transport family D9C12_03600 PF01032 FecCD transport family D9C12_03605 PF00005 ABC transporter D9C12_03610 PF01497 Periplasmic binding protein D9C12_03615 PF07690 Major Facilitator Superfamily D9C12_03620 PF00440 Bacterial regulatory proteins, tetR family D9C12_03625 PF00881 Nitroreductase family D9C12_03630 PF03992 Antibiotic biosynthesis monooxygenase D9C12_03635 PF01022 Bacterial regulatory protein, arsR family D9C12_03640 PF00392 Bacterial regulatory proteins, gntR family D9C12_03640 PF00155 Aminotransferase class I and II D9C12_03645 PF00202 Aminotransferase class-III D9C12_03650 PF00171 Aldehyde dehydrogenase family D9C12_03655 PF06800 Sugar transport protein D9C12_03665 PF07987 Domain of unkown function (DUF1775) D9C12_03670 PF05425 Copper resistance protein D D9C12_03670 PF04234 CopC domain D9C12_03670 PF13115 YtkA-like D9C12_03675 PF08220 DeoR-like helix-turn-helix domain D9C12_03675 PF05573 NosL D9C12_03685 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D9C12_03685 PF02378 Phosphotransferase system, EIIC D9C12_03690 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D9C12_03695 PF01232 Mannitol dehydrogenase Rossmann domain D9C12_03695 PF08125 Mannitol dehydrogenase C-terminal domain D9C12_03700 PF00180 Isocitrate/isopropylmalate dehydrogenase D9C12_03705 PF10502 Signal peptidase, peptidase S26 D9C12_03715 PF07977 FabA-like domain D9C12_03735 PF03746 LamB/YcsF family D9C12_03740 PF01566 Natural resistance-associated macrophage protein D9C12_03745 PF07286 Protein of unknown function (DUF1445) D9C12_03750 PF02682 Carboxyltransferase domain, subdomain C and D D9C12_03755 PF02626 Carboxyltransferase domain, subdomain A and B D9C12_03760 PF09339 IclR helix-turn-helix domain D9C12_03760 PF01614 Bacterial transcriptional regulator D9C12_03765 PF13472 GDSL-like Lipase/Acylhydrolase family D9C12_03770 PF13129 Protein of unknown function (DUF3953) D9C12_03775 PF03992 Antibiotic biosynthesis monooxygenase D9C12_03780 PF03717 Penicillin-binding Protein dimerisation domain D9C12_03780 PF05223 NTF2-like N-terminal transpeptidase domain D9C12_03780 PF00905 Penicillin binding protein transpeptidase domain D9C12_03785 PF00248 Aldo/keto reductase family D9C12_03790 PF00874 PRD domain D9C12_03790 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D9C12_03790 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D9C12_03790 PF05043 Mga helix-turn-helix domain D9C12_03790 PF08279 HTH domain D9C12_03795 PF00501 AMP-binding enzyme D9C12_03795 PF13193 AMP-binding enzyme C-terminal domain D9C12_03800 PF13649 Methyltransferase domain D9C12_03815 PF13302 Acetyltransferase (GNAT) domain D9C12_03820 PF16242 Pyridoxamine 5'-phosphate oxidase like D9C12_03825 PF10997 Alternate to MurJ D9C12_03830 PF12823 Domain of unknown function (DUF3817) D9C12_03835 PF01037 Lrp/AsnC ligand binding domain D9C12_03840 PF01751 Toprim domain D9C12_03840 PF01131 DNA topoisomerase D9C12_03845 PF00293 NUDIX domain D9C12_03850 PF00205 Thiamine pyrophosphate enzyme, central domain D9C12_03850 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D9C12_03850 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D9C12_03875 PF01566 Natural resistance-associated macrophage protein D9C12_03880 PF04226 Transglycosylase associated protein D9C12_03885 PF09954 Uncharacterized protein conserved in bacteria (DUF2188) D9C12_03890 PF12787 EcsC protein family D9C12_03895 PF00477 Small hydrophilic plant seed protein D9C12_03895 PF10685 Stress-induced bacterial acidophilic repeat motif D9C12_03900 PF07883 Cupin domain D9C12_03905 PF16291 Domain of unknown function (DUF4937 D9C12_03910 PF05067 Manganese containing catalase D9C12_03915 PF03480 Bacterial extracellular solute-binding protein, family 7 D9C12_03920 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain D9C12_03920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D9C12_03920 PF17203 Single cache domain 3 D9C12_03925 PF00072 Response regulator receiver domain D9C12_03925 PF08279 HTH domain D9C12_03930 PF00375 Sodium:dicarboxylate symporter family D9C12_03935 PF01594 AI-2E family transporter D9C12_03940 PF00005 ABC transporter D9C12_03955 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D9C12_03955 PF08028 Acyl-CoA dehydrogenase, C-terminal domain D9C12_03955 PF02770 Acyl-CoA dehydrogenase, middle domain D9C12_03960 PF13040 Fur-regulated basic protein B D9C12_03970 PF16916 Dimerisation domain of Zinc Transporter D9C12_03970 PF01545 Cation efflux family D9C12_03975 PF00085 Thioredoxin D9C12_03980 PF01820 D-ala D-ala ligase N-terminus D9C12_03980 PF07478 D-ala D-ala ligase C-terminus D9C12_03985 PF01225 Mur ligase family, catalytic domain D9C12_03985 PF02875 Mur ligase family, glutamate ligase domain D9C12_03985 PF08245 Mur ligase middle domain D9C12_03995 PF00271 Helicase conserved C-terminal domain D9C12_03995 PF00270 DEAD/DEAH box helicase D9C12_04000 PF03703 Bacterial PH domain D9C12_04005 PF03703 Bacterial PH domain D9C12_04010 PF01694 Rhomboid family D9C12_04015 PF01648 4'-phosphopantetheinyl transferase superfamily D9C12_04025 PF00842 Alanine racemase, C-terminal domain D9C12_04025 PF01168 Alanine racemase, N-terminal domain D9C12_04030 PF01402 Ribbon-helix-helix protein, copG family D9C12_04035 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system D9C12_04040 PF01740 STAS domain D9C12_04040 PF08678 Rsbr N terminal D9C12_04045 PF01740 STAS domain D9C12_04050 PF13581 Histidine kinase-like ATPase domain D9C12_04055 PF08673 Phosphoserine phosphatase RsbU, N-terminal domain D9C12_04055 PF07228 Stage II sporulation protein E (SpoIIE) D9C12_04060 PF01740 STAS domain D9C12_04065 PF13581 Histidine kinase-like ATPase domain D9C12_04070 PF04542 Sigma-70 region 2 D9C12_04070 PF04539 Sigma-70 region 3 D9C12_04070 PF04545 Sigma-70, region 4 D9C12_04075 PF07228 Stage II sporulation protein E (SpoIIE) D9C12_04080 PF09371 Tex-like protein N-terminal domain D9C12_04080 PF17674 HHH domain D9C12_04080 PF00575 S1 RNA binding domain D9C12_04080 PF16921 Tex protein YqgF-like domain D9C12_04090 PF17283 SprT-like zinc ribbon domain D9C12_04090 PF10263 SprT-like family D9C12_04140 PF03466 LysR substrate binding domain D9C12_04140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D9C12_04145 PF13302 Acetyltransferase (GNAT) domain D9C12_04155 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH D9C12_04155 PF04740 LXG domain of WXG superfamily D9C12_04165 PF01381 Helix-turn-helix D9C12_04190 PF01965 DJ-1/PfpI family D9C12_04195 PF00313 'Cold-shock' DNA-binding domain D9C12_04200 PF02559 CarD-like/TRCF domain D9C12_04220 PF00892 EamA-like transporter family D9C12_04225 PF02311 AraC-like ligand binding domain D9C12_04225 PF12833 Helix-turn-helix domain D9C12_04230 PF00892 EamA-like transporter family D9C12_04235 PF12833 Helix-turn-helix domain D9C12_04235 PF06445 GyrI-like small molecule binding domain D9C12_04240 PF00155 Aminotransferase class I and II D9C12_04240 PF00392 Bacterial regulatory proteins, gntR family D9C12_04250 PF08818 Domain of unknown function (DU1801) D9C12_04270 PF00381 PTS HPr component phosphorylation site D9C12_04275 PF00440 Bacterial regulatory proteins, tetR family D9C12_04280 PF00892 EamA-like transporter family D9C12_04285 PF00392 Bacterial regulatory proteins, gntR family D9C12_04285 PF00155 Aminotransferase class I and II D9C12_04290 PF01575 MaoC like domain D9C12_04295 PF06821 Serine hydrolase D9C12_04300 PF01638 HxlR-like helix-turn-helix D9C12_04305 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 D9C12_04305 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) D9C12_04310 PF01022 Bacterial regulatory protein, arsR family D9C12_04315 PF02040 Arsenical pump membrane protein D9C12_04325 PF12746 GNAT acetyltransferase D9C12_04330 PF00892 EamA-like transporter family D9C12_04335 PF00392 Bacterial regulatory proteins, gntR family D9C12_04335 PF00155 Aminotransferase class I and II D9C12_04340 PF00282 Pyridoxal-dependent decarboxylase conserved domain D9C12_04345 PF01613 Flavin reductase like domain D9C12_04370 PF07730 Histidine kinase D9C12_04370 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D9C12_04375 PF00072 Response regulator receiver domain D9C12_04375 PF00196 Bacterial regulatory proteins, luxR family D9C12_04380 PF03176 MMPL family D9C12_04390 PF12697 Alpha/beta hydrolase family D9C12_04395 PF04474 Protein of unknown function (DUF554) D9C12_04400 PF06445 GyrI-like small molecule binding domain D9C12_04400 PF13411 MerR HTH family regulatory protein D9C12_04405 PF16916 Dimerisation domain of Zinc Transporter D9C12_04405 PF01545 Cation efflux family D9C12_04410 PF00881 Nitroreductase family D9C12_04415 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D9C12_04420 PF07681 DoxX D9C12_04425 PF00085 Thioredoxin D9C12_04430 PF10676 Spore germination protein gerPA/gerPF D9C12_04435 PF10676 Spore germination protein gerPA/gerPF D9C12_04440 PF04239 Protein of unknown function (DUF421) D9C12_04445 PF04239 Protein of unknown function (DUF421) D9C12_04450 PF00011 Hsp20/alpha crystallin family D9C12_04455 PF10676 Spore germination protein gerPA/gerPF D9C12_04460 PF10676 Spore germination protein gerPA/gerPF D9C12_04465 PF00440 Bacterial regulatory proteins, tetR family D9C12_04470 PF13564 DoxX-like family D9C12_04475 PF00583 Acetyltransferase (GNAT) family D9C12_04485 PF00324 Amino acid permease D9C12_04490 PF05163 DinB family D9C12_04495 PF01047 MarR family D9C12_04500 PF03176 MMPL family D9C12_04505 PF00881 Nitroreductase family D9C12_04510 PF01047 MarR family D9C12_04515 PF07690 Major Facilitator Superfamily D9C12_04520 PF01925 Sulfite exporter TauE/SafE D9C12_04525 PF00392 Bacterial regulatory proteins, gntR family D9C12_04525 PF07729 FCD domain D9C12_04530 PF00704 Glycosyl hydrolases family 18 D9C12_04530 PF01476 LysM domain D9C12_04535 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase D9C12_04540 PF11611 Domain of unknown function (DUF4352) D9C12_04540 PF08139 Prokaryotic membrane lipoprotein lipid attachment site D9C12_04545 PF00245 Alkaline phosphatase D9C12_04550 PF08818 Domain of unknown function (DU1801) D9C12_04555 PF16302 Domain of unknown function (DUF4944) D9C12_04560 PF00583 Acetyltransferase (GNAT) family D9C12_04565 PF01966 HD domain D9C12_04570 PF07563 Protein of unknown function (DUF1541) D9C12_04575 PF07690 Major Facilitator Superfamily D9C12_04580 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D9C12_04595 PF00232 Glycosyl hydrolase family 1 D9C12_04600 PF00392 Bacterial regulatory proteins, gntR family D9C12_04600 PF07702 UTRA domain D9C12_04605 PF00480 ROK family D9C12_04615 PF02156 Glycosyl hydrolase family 26 D9C12_04660 PF00586 AIR synthase related protein, N-terminal domain D9C12_04660 PF02769 AIR synthase related protein, C-terminal domain D9C12_04665 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE D9C12_04670 PF00814 Glycoprotease family D9C12_04675 PF00583 Acetyltransferase (GNAT) family D9C12_04680 PF00814 Glycoprotease family D9C12_04690 PF12848 ABC transporter D9C12_04690 PF16326 ABC transporter C-terminal domain D9C12_04690 PF00005 ABC transporter D9C12_04695 PF01967 MoaC family D9C12_04700 PF06971 Putative DNA-binding protein N-terminus D9C12_04700 PF02629 CoA binding domain D9C12_04705 PF02416 mttA/Hcf106 family D9C12_04710 PF00902 Sec-independent protein translocase protein (TatC) D9C12_04720 PF14146 Domain of unknown function (DUF4305) D9C12_04725 PF02517 CPBP intramembrane metalloprotease D9C12_04730 PF00166 Chaperonin 10 Kd subunit D9C12_04735 PF00118 TCP-1/cpn60 chaperonin family D9C12_04740 PF13495 Phage integrase, N-terminal SAM-like domain D9C12_04740 PF00589 Phage integrase family D9C12_04745 PF06114 IrrE N-terminal-like domain D9C12_04750 PF01381 Helix-turn-helix D9C12_04770 PF01381 Helix-turn-helix D9C12_04775 PF17448 Uncharacterized YqaH-like D9C12_04780 PF09466 Hypothetical protein Yqai D9C12_04810 PF07261 Replication initiation and membrane attachment D9C12_04815 PF01695 IstB-like ATP binding protein D9C12_04820 PF05866 Endodeoxyribonuclease RusA D9C12_04825 PF17356 Phage-like element PBSX protein XtrA D9C12_04905 PF00574 Clp protease D9C12_04950 PF01464 Transglycosylase SLT domain D9C12_04960 PF13457 GW (Gly-Tryp) dipeptide domain D9C12_04960 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase D9C12_04985 PF10960 BhlA holin family D9C12_04990 PF04688 SPP1 phage holin D9C12_04995 PF01510 N-acetylmuramoyl-L-alanine amidase D9C12_04995 PF01471 Putative peptidoglycan binding domain D9C12_04995 PF01476 LysM domain D9C12_05005 PF14449 Pre-toxin TG D9C12_05005 PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues D9C12_05005 PF04740 LXG domain of WXG superfamily D9C12_05060 PF13176 Tetratricopeptide repeat D9C12_05060 PF00931 NB-ARC domain D9C12_05065 PF00107 Zinc-binding dehydrogenase D9C12_05065 PF08240 Alcohol dehydrogenase GroES-like domain D9C12_05075 PF00294 pfkB family carbohydrate kinase D9C12_05080 PF04012 PspA/IM30 family D9C12_05085 PF08271 TFIIB zinc-binding D9C12_05090 PF04536 TPM domain D9C12_05095 PF13421 SPFH domain-Band 7 family D9C12_05105 PF00083 Sugar (and other) transporter D9C12_05110 PF08240 Alcohol dehydrogenase GroES-like domain D9C12_05110 PF00107 Zinc-binding dehydrogenase D9C12_05115 PF03330 Lytic transglycolase D9C12_05120 PF07676 WD40-like Beta Propeller Repeat D9C12_05135 PF14169 Cold-inducible protein YdjO D9C12_05140 PF12697 Alpha/beta hydrolase family D9C12_05150 PF00394 Multicopper oxidase D9C12_05150 PF07731 Multicopper oxidase D9C12_05150 PF07732 Multicopper oxidase D9C12_05155 PF00324 Amino acid permease D9C12_05165 PF01545 Cation efflux family D9C12_05165 PF16916 Dimerisation domain of Zinc Transporter D9C12_05170 PF07726 ATPase family associated with various cellular activities (AAA) D9C12_05170 PF17863 AAA lid domain D9C12_05175 PF01882 Protein of unknown function DUF58 D9C12_05180 PF01841 Transglutaminase-like superfamily D9C12_05180 PF13559 Domain of unknown function (DUF4129) D9C12_05180 PF11992 Domain of unknown function (DUF3488) D9C12_05185 PF02540 NAD synthase D9C12_05185 PF00958 GMP synthase C terminal domain D9C12_05185 PF00117 Glutamine amidotransferase class-I D9C12_05200 PF00860 Permease family D9C12_05215 PF13076 Fur-regulated basic protein A D9C12_05220 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) D9C12_05225 PF14044 NETI protein D9C12_05230 PF00731 AIR carboxylase D9C12_05235 PF02222 ATP-grasp domain D9C12_05235 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain D9C12_05240 PF10397 Adenylosuccinate lyase C-terminus D9C12_05240 PF00206 Lyase D9C12_05245 PF01259 SAICAR synthetase D9C12_05250 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase D9C12_05260 PF00586 AIR synthase related protein, N-terminal domain D9C12_05260 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain D9C12_05260 PF02769 AIR synthase related protein, C-terminal domain D9C12_05265 PF00156 Phosphoribosyl transferase domain D9C12_05270 PF00586 AIR synthase related protein, N-terminal domain D9C12_05270 PF02769 AIR synthase related protein, C-terminal domain D9C12_05275 PF00551 Formyl transferase D9C12_05280 PF02142 MGS-like domain D9C12_05280 PF01808 AICARFT/IMPCHase bienzyme D9C12_05285 PF02844 Phosphoribosylglycinamide synthetase, N domain D9C12_05285 PF02843 Phosphoribosylglycinamide synthetase, C domain D9C12_05285 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain D9C12_05290 PF01037 Lrp/AsnC ligand binding domain D9C12_05300 PF11127 Protein of unknown function (DUF2892) D9C12_05305 PF01979 Amidohydrolase family D9C12_05305 PF13382 Adenine deaminase C-terminal domain D9C12_05310 PF11258 Protein of unknown function (DUF3048) N-terminal domain D9C12_05310 PF17479 Protein of unknown function (DUF3048) C-terminal domain D9C12_05315 PF01371 Trp repressor protein D9C12_05320 PF01645 Conserved region in glutamate synthase D9C12_05325 PF01884 PcrB family D9C12_05330 PF00580 UvrD/REP helicase N-terminal domain D9C12_05330 PF13361 UvrD-like helicase C-terminal domain D9C12_05335 PF12826 Helix-hairpin-helix motif D9C12_05335 PF03119 NAD-dependent DNA ligase C4 zinc finger domain D9C12_05335 PF00533 BRCA1 C Terminus (BRCT) domain D9C12_05335 PF01653 NAD-dependent DNA ligase adenylation domain D9C12_05335 PF03120 NAD-dependent DNA ligase OB-fold domain D9C12_05345 PF01636 Phosphotransferase enzyme family D9C12_05350 PF02308 MgtC family D9C12_05355 PF00474 Sodium:solute symporter family D9C12_05360 PF02686 Glu-tRNAGln amidotransferase C subunit D9C12_05365 PF01425 Amidase D9C12_05370 PF02934 GatB/GatE catalytic domain D9C12_05370 PF02637 GatB domain D9C12_05375 PF00440 Bacterial regulatory proteins, tetR family D9C12_05380 PF00873 AcrB/AcrD/AcrF family D9C12_05385 PF00781 Diacylglycerol kinase catalytic domain D9C12_05390 PF01938 TRAM domain D9C12_05390 PF05958 tRNA (Uracil-5-)-methyltransferase D9C12_05420 PF13181 Tetratricopeptide repeat D9C12_05420 PF18801 response regulator aspartate phosphatase H, N terminal D9C12_05435 PF04634 Protein of unknown function, DUF600 D9C12_05440 PF04740 LXG domain of WXG superfamily D9C12_05460 PF13176 Tetratricopeptide repeat D9C12_05460 PF18801 response regulator aspartate phosphatase H, N terminal D9C12_05470 PF01709 Transcriptional regulator D9C12_05480 PF00440 Bacterial regulatory proteins, tetR family D9C12_05485 PF12680 SnoaL-like domain D9C12_05490 PF01370 NAD dependent epimerase/dehydratase family D9C12_05495 PF11007 Spore coat associated protein JA (CotJA) D9C12_05500 PF12652 CotJB protein D9C12_05505 PF05067 Manganese containing catalase D9C12_05510 PF00583 Acetyltransferase (GNAT) family D9C12_05520 PF04854 Protein of unknown function, DUF624 D9C12_05525 PF06580 Histidine kinase D9C12_05525 PF02743 Cache domain D9C12_05525 PF00672 HAMP domain D9C12_05525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D9C12_05535 PF13416 Bacterial extracellular solute-binding protein D9C12_05545 PF00528 Binding-protein-dependent transport system inner membrane component D9C12_05550 PF07470 Glycosyl Hydrolase Family 88 D9C12_05555 PF12833 Helix-turn-helix domain D9C12_05560 PF13472 GDSL-like Lipase/Acylhydrolase family D9C12_05565 PF09224 Domain of unknown function (DUF1961) D9C12_05570 PF04854 Protein of unknown function, DUF624 D9C12_05580 PF18370 Rhamnogalacturonan I lyases beta-sheet domain D9C12_05580 PF01839 FG-GAP repeat D9C12_05585 PF00657 GDSL-like Lipase/Acylhydrolase D9C12_05590 PF08532 Beta-galactosidase trimerisation domain D9C12_05590 PF02449 Beta-galactosidase D9C12_05590 PF08533 Beta-galactosidase C-terminal domain D9C12_05600 PF01547 Bacterial extracellular solute-binding protein D9C12_05605 PF00528 Binding-protein-dependent transport system inner membrane component D9C12_05610 PF00528 Binding-protein-dependent transport system inner membrane component D9C12_05615 PF11975 Family 4 glycosyl hydrolase C-terminal domain D9C12_05615 PF02056 Family 4 glycosyl hydrolase D9C12_05620 PF04239 Protein of unknown function (DUF421) D9C12_05625 PF03992 Antibiotic biosynthesis monooxygenase D9C12_05630 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D9C12_05640 PF01740 STAS domain D9C12_05645 PF10055 Uncharacterized small protein (DUF2292) D9C12_05650 PF01027 Inhibitor of apoptosis-promoting Bax1 D9C12_05655 PF01494 FAD binding domain D9C12_05660 PF14338 Mrr N-terminal domain D9C12_05660 PF04471 Restriction endonuclease D9C12_05665 PF13037 Domain of unknown function (DUF3898) D9C12_05665 PF13039 Protein of unknown function (DUF3900) D9C12_05670 PF00067 Cytochrome P450 D9C12_05670 PF00175 Oxidoreductase NAD-binding domain D9C12_05670 PF00258 Flavodoxin D9C12_05670 PF00667 FAD binding domain D9C12_05675 PF00884 Sulfatase D9C12_05680 PF00483 Nucleotidyl transferase D9C12_05685 PF16363 GDP-mannose 4,6 dehydratase D9C12_05690 PF03407 Nucleotide-diphospho-sugar transferase D9C12_05695 PF00535 Glycosyl transferase family 2 D9C12_05700 PF03407 Nucleotide-diphospho-sugar transferase D9C12_05705 PF07690 Major Facilitator Superfamily D9C12_05710 PF13419 Haloacid dehalogenase-like hydrolase D9C12_05715 PF13520 Amino acid permease D9C12_05720 PF00171 Aldehyde dehydrogenase family D9C12_05725 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D9C12_05730 PF12848 ABC transporter D9C12_05730 PF16326 ABC transporter C-terminal domain D9C12_05730 PF00005 ABC transporter D9C12_05735 PF10787 Uncharacterised protein from bacillus cereus group D9C12_05740 PF13411 MerR HTH family regulatory protein D9C12_05745 PF07690 Major Facilitator Superfamily D9C12_05765 PF12848 ABC transporter D9C12_05765 PF00005 ABC transporter D9C12_05770 PF00270 DEAD/DEAH box helicase D9C12_05770 PF00271 Helicase conserved C-terminal domain D9C12_05775 PF00583 Acetyltransferase (GNAT) family D9C12_05780 PF00872 Transposase, Mutator family D9C12_05790 PF00107 Zinc-binding dehydrogenase D9C12_05790 PF16884 N-terminal domain of oxidoreductase D9C12_05795 PF00005 ABC transporter D9C12_05800 PF01032 FecCD transport family D9C12_05805 PF01032 FecCD transport family D9C12_05810 PF01497 Periplasmic binding protein D9C12_05815 PF11486 Protein of unknown function (DUF3212) D9C12_05820 PF11181 Heat induced stress protein YflT D9C12_05825 PF00544 Pectate lyase D9C12_05830 PF00939 Sodium:sulfate symporter transmembrane region D9C12_05835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D9C12_05835 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain D9C12_05840 PF08279 HTH domain D9C12_05840 PF00072 Response regulator receiver domain D9C12_05840 PF12431 Transcriptional regulator D9C12_05845 PF03401 Tripartite tricarboxylate transporter family receptor D9C12_05850 PF03600 Citrate transporter D9C12_05855 PF00753 Metallo-beta-lactamase superfamily D9C12_05860 PF02898 Nitric oxide synthase, oxygenase domain D9C12_05865 PF00708 Acylphosphatase D9C12_05870 PF03475 3-alpha domain D9C12_05870 PF03473 MOSC domain D9C12_05875 PF11121 Protein of unknown function (DUF2639) D9C12_05885 PF11588 Protein of unknown function (DUF3243) D9C12_05890 PF00557 Metallopeptidase family M24 D9C12_05895 PF02378 Phosphotransferase system, EIIC D9C12_05895 PF00367 phosphotransferase system, EIIB D9C12_05900 PF00884 Sulfatase D9C12_05910 PF09350 Domain of unknown function (DUF1992) D9C12_05925 PF02378 Phosphotransferase system, EIIC D9C12_05925 PF00367 phosphotransferase system, EIIB D9C12_05930 PF00128 Alpha amylase, catalytic domain D9C12_05930 PF16657 Maltogenic Amylase, C-terminal domain D9C12_05935 PF00392 Bacterial regulatory proteins, gntR family D9C12_05935 PF07702 UTRA domain D9C12_05940 PF00881 Nitroreductase family D9C12_05945 PF00149 Calcineurin-like phosphoesterase D9C12_05945 PF02872 5'-nucleotidase, C-terminal domain D9C12_05950 PF01965 DJ-1/PfpI family D9C12_05955 PF07690 Major Facilitator Superfamily D9C12_05960 PF06569 Protein of unknown function (DUF1128) D9C12_05965 PF01451 Low molecular weight phosphotyrosine protein phosphatase D9C12_05975 PF03631 Virulence factor BrkB D9C12_05980 PF07690 Major Facilitator Superfamily D9C12_05985 PF01699 Sodium/calcium exchanger protein D9C12_05990 PF14167 YfkD-like protein D9C12_05995 PF00924 Mechanosensitive ion channel D9C12_06000 PF04055 Radical SAM superfamily D9C12_06000 PF08756 YfkB-like domain D9C12_06010 PF01522 Polysaccharide deacetylase D9C12_06015 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D9C12_06015 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D9C12_06020 PF01544 CorA-like Mg2+ transporter protein D9C12_06030 PF01938 TRAM domain D9C12_06030 PF05958 tRNA (Uracil-5-)-methyltransferase D9C12_06035 PF14118 YfzA-like protein D9C12_06040 PF01207 Dihydrouridine synthase (Dus) D9C12_06055 PF00676 Dehydrogenase E1 component D9C12_06060 PF02780 Transketolase, C-terminal domain D9C12_06060 PF02779 Transketolase, pyrimidine binding domain D9C12_06065 PF00364 Biotin-requiring enzyme D9C12_06065 PF02817 e3 binding domain D9C12_06065 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D9C12_06075 PF01590 GAF domain D9C12_06075 PF00158 Sigma-54 interaction domain D9C12_06075 PF02954 Bacterial regulatory protein, Fis family D9C12_06080 PF08141 Small acid-soluble spore protein H family D9C12_06085 PF02694 Uncharacterised BCR, YnfA/UPF0060 family D9C12_06090 PF17353 Family of unknown function (DUF5381) D9C12_06095 PF17353 Family of unknown function (DUF5381) D9C12_06110 PF06013 Proteins of 100 residues with WXG D9C12_06115 PF11975 Family 4 glycosyl hydrolase C-terminal domain D9C12_06115 PF02056 Family 4 glycosyl hydrolase D9C12_06120 PF01380 SIS domain D9C12_06120 PF01418 Helix-turn-helix domain, rpiR family D9C12_06125 PF02378 Phosphotransferase system, EIIC D9C12_06125 PF00367 phosphotransferase system, EIIB D9C12_06130 PF00005 ABC transporter D9C12_06130 PF00664 ABC transporter transmembrane region D9C12_06135 PF00005 ABC transporter D9C12_06135 PF00664 ABC transporter transmembrane region D9C12_06140 PF07681 DoxX D9C12_06145 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D9C12_06150 PF07730 Histidine kinase D9C12_06155 PF00072 Response regulator receiver domain D9C12_06155 PF00196 Bacterial regulatory proteins, luxR family D9C12_06175 PF03551 Transcriptional regulator PadR-like family D9C12_06175 PF10400 Virulence activator alpha C-term D9C12_06180 PF01674 Lipase (class 2) D9C12_06190 PF17922 Tetracyclin repressor-like, C-terminal domain D9C12_06190 PF00440 Bacterial regulatory proteins, tetR family D9C12_06195 PF07690 Major Facilitator Superfamily D9C12_06200 PF12867 DinB superfamily D9C12_06210 PF01047 MarR family D9C12_06215 PF09924 Uncharacterised conserved protein (DUF2156) D9C12_06215 PF03706 Lysylphosphatidylglycerol synthase TM region D9C12_06220 PF01497 Periplasmic binding protein D9C12_06225 PF01032 FecCD transport family D9C12_06230 PF01032 FecCD transport family D9C12_06235 PF02567 Phenazine biosynthesis-like protein D9C12_06240 PF00881 Nitroreductase family D9C12_06245 PF14151 YfhD-like protein D9C12_06250 PF14152 YfhE-like protein D9C12_06255 PF01370 NAD dependent epimerase/dehydratase family D9C12_06255 PF08338 Domain of unknown function (DUF1731) D9C12_06260 PF02631 RecX family D9C12_06265 PF08838 Protein of unknown function (DUF1811) D9C12_06270 PF07690 Major Facilitator Superfamily D9C12_06280 PF08176 Small acid-soluble spore protein K family D9C12_06285 PF14043 WVELL protein D9C12_06290 PF08239 Bacterial SH3 domain D9C12_06295 PF13630 SdpI/YhfL protein family D9C12_06300 PF00561 alpha/beta hydrolase fold D9C12_06305 PF00535 Glycosyl transferase family 2 D9C12_06310 PF09586 Bacterial membrane protein YfhO D9C12_06315 PF04307 LexA-binding, inner membrane-associated putative hydrolase D9C12_06320 PF00730 HhH-GPD superfamily base excision DNA repair protein D9C12_06320 PF14815 NUDIX domain D9C12_06335 PF04259 Small, acid-soluble spore protein, gamma-type D9C12_06340 PF14182 YgaB-like protein D9C12_06345 PF04167 Protein of unknown function (DUF402) D9C12_06350 PF00005 ABC transporter D9C12_06350 PF00664 ABC transporter transmembrane region D9C12_06355 PF06081 Aromatic acid exporter family member 1 D9C12_06360 PF00202 Aminotransferase class-III D9C12_06365 PF00578 AhpC/TSA family D9C12_06370 PF01475 Ferric uptake regulator family D9C12_06375 PF11023 Zinc-ribbon containing domain D9C12_06380 PF14540 Nucleotidyltransferase-like D9C12_06380 PF18576 Helix-turn-helix domain D9C12_06495 PF07070 SpoOM protein D9C12_06505 PF07875 Coat F domain D9C12_06510 PF03575 Peptidase family S51 D9C12_06515 PF01964 Radical SAM ThiC family D9C12_06515 PF13667 ThiC-associated domain D9C12_06525 PF13040 Fur-regulated basic protein B D9C12_06530 PF06628 Catalase-related immune-responsive D9C12_06530 PF00199 Catalase D9C12_06535 PF00005 ABC transporter D9C12_06540 PF09084 NMT1/THI5 like D9C12_06545 PF00528 Binding-protein-dependent transport system inner membrane component D9C12_06550 PF00296 Luciferase-like monooxygenase D9C12_06560 PF00253 Ribosomal protein S14p/S29e D9C12_06570 PF01381 Helix-turn-helix D9C12_06585 PF08331 Domain of unknown function (DUF1730) D9C12_06590 PF12671 Putative amidase domain D9C12_06595 PF00588 SpoU rRNA Methylase family D9C12_06600 PF13171 Protein of unknown function (DUF4004) D9C12_06605 PF04519 Polymer-forming cytoskeletal D9C12_06615 PF06798 PrkA serine protein kinase C-terminal domain D9C12_06615 PF08298 PrkA AAA domain D9C12_06620 PF04285 Protein of unknown function (DUF444) D9C12_06625 PF01047 MarR family D9C12_06635 PF07690 Major Facilitator Superfamily D9C12_06640 PF03358 NADPH-dependent FMN reductase D9C12_06660 PF00392 Bacterial regulatory proteins, gntR family D9C12_06665 PF00005 ABC transporter D9C12_06670 PF00005 ABC transporter D9C12_06675 PF12679 ABC-2 family transporter protein D9C12_06680 PF00313 'Cold-shock' DNA-binding domain D9C12_06690 PF03180 NLPA lipoprotein D9C12_06695 PF07694 5TMR of 5TMR-LYT D9C12_06695 PF00990 Diguanylate cyclase, GGDEF domain D9C12_06700 PF00375 Sodium:dicarboxylate symporter family D9C12_06705 PF04740 LXG domain of WXG superfamily D9C12_06705 PF14449 Pre-toxin TG D9C12_06705 PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues D9C12_06730 PF14659 Phage integrase, N-terminal SAM-like domain D9C12_06730 PF00589 Phage integrase family D9C12_06735 PF18106 Rolling Circle replication initiation protein N-terminal domain D9C12_06735 PF02486 Replication initiation factor D9C12_06760 PF12642 Conjugative transposon protein TcpC D9C12_06770 PF12648 TcpE family D9C12_06780 PF08960 Domain of unknown function (DUF1874) D9C12_06790 PF00877 NlpC/P60 family D9C12_06800 PF14729 Domain of unknown function with cystatin-like fold (DUF4467) D9C12_06810 PF18801 response regulator aspartate phosphatase H, N terminal D9C12_06820 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) D9C12_06835 PF00746 LPXTG cell wall anchor motif D9C12_06835 PF00149 Calcineurin-like phosphoesterase D9C12_06835 PF02872 5'-nucleotidase, C-terminal domain D9C12_06835 PF00565 Staphylococcal nuclease homologue D9C12_06840 PF04203 Sortase domain D9C12_06845 PF00849 RNA pseudouridylate synthase D9C12_06845 PF01479 S4 domain D9C12_06850 PF17326 Family of unknown function (DUF5365) D9C12_06855 PF00571 CBS domain D9C12_06860 PF13419 Haloacid dehalogenase-like hydrolase D9C12_06865 PF00795 Carbon-nitrogen hydrolase D9C12_06865 PF00583 Acetyltransferase (GNAT) family D9C12_06875 PF00202 Aminotransferase class-III D9C12_06880 PF04309 Glycerol-3-phosphate responsive antiterminator D9C12_06885 PF00230 Major intrinsic protein D9C12_06890 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D9C12_06890 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D9C12_06895 PF16901 C-terminal domain of alpha-glycerophosphate oxidase D9C12_06895 PF01266 FAD dependent oxidoreductase D9C12_06900 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II D9C12_06900 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain D9C12_06900 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I D9C12_06900 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III D9C12_06905 PF13185 GAF domain D9C12_06905 PF07730 Histidine kinase D9C12_06910 PF00196 Bacterial regulatory proteins, luxR family D9C12_06910 PF00072 Response regulator receiver domain D9C12_06915 PF03358 NADPH-dependent FMN reductase D9C12_06920 PF14148 YhdB-like protein D9C12_06925 PF13028 Protein of unknown function (DUF3889) D9C12_06930 PF01476 LysM domain D9C12_06930 PF00877 NlpC/P60 family D9C12_06935 PF02082 Transcriptional regulator D9C12_06945 PF05552 Conserved TM helix D9C12_06950 PF04293 SpoVR like protein D9C12_06955 PF00245 Alkaline phosphatase D9C12_06960 PF00877 NlpC/P60 family D9C12_06960 PF01476 LysM domain D9C12_06965 PF03466 LysR substrate binding domain D9C12_06965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D9C12_06970 PF00285 Citrate synthase, C-terminal domain D9C12_06985 PF13520 Amino acid permease D9C12_06990 PF00209 Sodium:neurotransmitter symporter family D9C12_07000 PF00583 Acetyltransferase (GNAT) family D9C12_07005 PF17453 Sigma-M inhibitor D9C12_07010 PF13800 Sigma factor regulator N-terminal D9C12_07010 PF13791 Sigma factor regulator C-terminal D9C12_07015 PF04542 Sigma-70 region 2 D9C12_07015 PF08281 Sigma-70, region 4 D9C12_07020 PF00248 Aldo/keto reductase family D9C12_07025 PF01553 Acyltransferase D9C12_07030 PF00571 CBS domain D9C12_07030 PF01595 Cyclin M transmembrane N-terminal domain D9C12_07030 PF03471 Transporter associated domain D9C12_07035 PF13411 MerR HTH family regulatory protein D9C12_07045 PF01595 Cyclin M transmembrane N-terminal domain D9C12_07045 PF03471 Transporter associated domain D9C12_07045 PF00571 CBS domain D9C12_07050 PF02537 CrcB-like protein, Camphor Resistance (CrcB) D9C12_07055 PF02537 CrcB-like protein, Camphor Resistance (CrcB) D9C12_07060 PF03009 Glycerophosphoryl diester phosphodiesterase family D9C12_07065 PF17444 Uncharacterized YhdX-like D9C12_07070 PF00924 Mechanosensitive ion channel D9C12_07075 PF02146 Sir2 family D9C12_07080 PF01522 Polysaccharide deacetylase D9C12_07085 PF01063 Amino-transferase class IV D9C12_07090 PF03553 Na+/H+ antiporter family D9C12_07095 PF00582 Universal stress protein family D9C12_07105 PF00005 ABC transporter D9C12_07105 PF00664 ABC transporter transmembrane region D9C12_07110 PF00005 ABC transporter D9C12_07110 PF00664 ABC transporter transmembrane region D9C12_07115 PF13460 NAD(P)H-binding D9C12_07125 PF00269 Small, acid-soluble spore proteins, alpha/beta type D9C12_07130 PF17277 Family of unknown function (DUF5342) D9C12_07135 PF14398 YheC/D like ATP-grasp D9C12_07140 PF14398 YheC/D like ATP-grasp D9C12_07145 PF04286 Protein of unknown function (DUF445) D9C12_07150 PF06133 Control of competence regulator ComK, YlbF/YmcA D9C12_07165 PF04055 Radical SAM superfamily D9C12_07170 PF00999 Sodium/hydrogen exchanger family D9C12_07175 PF02080 TrkA-C domain D9C12_07185 PF00378 Enoyl-CoA hydratase/isomerase D9C12_07190 PF14120 YhzD-like protein D9C12_07195 PF00005 ABC transporter D9C12_07195 PF13732 Domain of unknown function (DUF4162) D9C12_07205 PF00149 Calcineurin-like phosphoesterase D9C12_07210 PF13514 AAA domain D9C12_07215 PF01966 HD domain D9C12_07220 PF14147 Sporulation protein YhaL D9C12_07230 PF09680 Family of unknown function D9C12_07235 PF09680 Family of unknown function D9C12_07245 PF11667 Putative zincin peptidase D9C12_07250 PF08963 Protein of unknown function (DUF1878) D9C12_07255 PF01047 MarR family D9C12_07260 PF12732 YtxH-like protein D9C12_07270 PF17099 Tryptophan transporter TrpP D9C12_07275 PF00266 Aminotransferase class-V D9C12_07280 PF01230 HIT domain D9C12_07285 PF00005 ABC transporter D9C12_07290 PF05975 Bacterial ABC transporter protein EcsB D9C12_07295 PF12787 EcsC protein family D9C12_07300 PF07687 Peptidase dimerisation domain D9C12_07300 PF01546 Peptidase family M20/M25/M40 D9C12_07315 PF03992 Antibiotic biosynthesis monooxygenase D9C12_07320 PF00905 Penicillin binding protein transpeptidase domain D9C12_07320 PF00912 Transglycosylase D9C12_07325 PF01208 Uroporphyrinogen decarboxylase (URO-D) D9C12_07340 PF17932 Tetracyclin repressor-like, C-terminal domain D9C12_07340 PF00440 Bacterial regulatory proteins, tetR family D9C12_07360 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal D9C12_07360 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III D9C12_07365 PF10086 YhfC intramembrane metalloprotease D9C12_07375 PF05343 M42 glutamyl aminopeptidase D9C12_07380 PF04266 ASCH domain D9C12_07385 PF00375 Sodium:dicarboxylate symporter family D9C12_07390 PF14149 YhfH-like protein D9C12_07395 PF12706 Beta-lactamase superfamily domain D9C12_07400 PF10437 Bacterial lipoate protein ligase C-terminus D9C12_07400 PF03099 Biotin/lipoate A/B protein ligase family D9C12_07405 PF13460 NAD(P)H-binding D9C12_07410 PF13193 AMP-binding enzyme C-terminal domain D9C12_07410 PF00501 AMP-binding enzyme D9C12_07425 PF01435 Peptidase family M48 D9C12_07425 PF16491 CAAX prenyl protease N-terminal, five membrane helices D9C12_07430 PF05922 Peptidase inhibitor I9 D9C12_07430 PF00082 Subtilase family D9C12_07435 PF00583 Acetyltransferase (GNAT) family D9C12_07440 PF00107 Zinc-binding dehydrogenase D9C12_07440 PF08240 Alcohol dehydrogenase GroES-like domain D9C12_07445 PF01497 Periplasmic binding protein D9C12_07455 PF00300 Histidine phosphatase superfamily (branch 1) D9C12_07460 PF00108 Thiolase, N-terminal domain D9C12_07460 PF02803 Thiolase, C-terminal domain D9C12_07465 PF00501 AMP-binding enzyme D9C12_07465 PF13193 AMP-binding enzyme C-terminal domain D9C12_07470 PF02632 BioY family D9C12_07475 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D9C12_07490 PF08858 IDEAL domain D9C12_07495 PF06338 ComK protein D9C12_07505 PF05901 Excalibur calcium-binding domain D9C12_07510 PF00474 Sodium:solute symporter family D9C12_07515 PF11755 Protein of unknown function (DUF3311) D9C12_07525 PF09335 SNARE associated Golgi protein D9C12_07530 PF10502 Signal peptidase, peptidase S26 D9C12_07535 PF01494 FAD binding domain D9C12_07540 PF01047 MarR family D9C12_07560 PF07690 Major Facilitator Superfamily D9C12_07565 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D9C12_07565 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D9C12_07570 PF05116 Sucrose-6F-phosphate phosphohydrolase D9C12_07575 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family D9C12_07580 PF00356 Bacterial regulatory proteins, lacI family D9C12_07585 PF05145 Transition state regulatory protein AbrB D9C12_07590 PF07690 Major Facilitator Superfamily D9C12_07595 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D9C12_07595 PF12793 Sugar transport-related sRNA regulator N-term D9C12_07600 PF03860 Domain of Unknown Function (DUF326) D9C12_07605 PF02915 Rubrerythrin D9C12_07610 PF12705 PD-(D/E)XK nuclease superfamily D9C12_07610 PF13361 UvrD-like helicase C-terminal domain D9C12_07615 PF12705 PD-(D/E)XK nuclease superfamily D9C12_07615 PF13361 UvrD-like helicase C-terminal domain D9C12_07615 PF00580 UvrD/REP helicase N-terminal domain D9C12_07620 PF00149 Calcineurin-like phosphoesterase D9C12_07620 PF12320 Type 5 capsule protein repressor C-terminal domain D9C12_07625 PF13476 AAA domain D9C12_07635 PF10676 Spore germination protein gerPA/gerPF D9C12_07640 PF10970 Spore germination protein GerPE D9C12_07650 PF10737 Spore germination protein GerPC D9C12_07655 PF10803 Spore germination GerPB D9C12_07660 PF10676 Spore germination protein gerPA/gerPF D9C12_07665 PF09388 Spo0E like sporulation regulatory protein D9C12_07670 PF08757 CotH kinase protein D9C12_07675 PF01557 Fumarylacetoacetate (FAA) hydrolase family D9C12_07680 PF07457 Protein of unknown function (DUF1516) D9C12_07685 PF00082 Subtilase family D9C12_07685 PF17936 Bacterial Ig domain D9C12_07695 PF10949 Protein of unknown function (DUF2777) D9C12_07700 PF13537 Glutamine amidotransferase domain D9C12_07700 PF00733 Asparagine synthase D9C12_07710 PF01554 MatE D9C12_07715 PF02311 AraC-like ligand binding domain D9C12_07715 PF12833 Helix-turn-helix domain D9C12_07720 PF00356 Bacterial regulatory proteins, lacI family D9C12_07725 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D9C12_07725 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D9C12_07730 PF05163 DinB family D9C12_07735 PF01810 LysE type translocator D9C12_07740 PF00392 Bacterial regulatory proteins, gntR family D9C12_07740 PF00155 Aminotransferase class I and II D9C12_07745 PF13599 Pentapeptide repeats (9 copies) D9C12_07750 PF00561 alpha/beta hydrolase fold D9C12_07750 PF08386 TAP-like protein D9C12_07760 PF13673 Acetyltransferase (GNAT) domain D9C12_07765 PF02219 Methylenetetrahydrofolate reductase D9C12_07765 PF02574 Homocysteine S-methyltransferase D9C12_07770 PF04461 Protein of unknown function (DUF520) D9C12_07775 PF17783 CvfB-like winged helix domain D9C12_07775 PF13509 S1 domain D9C12_07790 PF17418 Sporulation delaying protein SdpA D9C12_07795 PF03551 Transcriptional regulator PadR-like family D9C12_07805 PF12650 Domain of unknown function (DUF3784) D9C12_07810 PF07504 Fungalysin/Thermolysin Propeptide Motif D9C12_07810 PF03413 Peptidase propeptide and YPEB domain D9C12_07810 PF02868 Thermolysin metallopeptidase, alpha-helical domain D9C12_07810 PF01447 Thermolysin metallopeptidase, catalytic domain D9C12_07815 PF02645 Uncharacterised protein, DegV family COG1307 D9C12_07820 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) D9C12_07820 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 D9C12_07825 PF12690 Intracellular proteinase inhibitor D9C12_07830 PF12758 Protein of unknown function (DUF3813) D9C12_07840 PF00326 Prolyl oligopeptidase family D9C12_07845 PF01883 Iron-sulfur cluster assembly protein D9C12_07855 PF01565 FAD binding domain D9C12_07865 PF01118 Semialdehyde dehydrogenase, NAD binding domain D9C12_07865 PF02774 Semialdehyde dehydrogenase, dimerisation domain D9C12_07870 PF01960 ArgJ family D9C12_07875 PF00696 Amino acid kinase family D9C12_07880 PF00202 Aminotransferase class-III D9C12_07885 PF00117 Glutamine amidotransferase class-I D9C12_07885 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain D9C12_07890 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D9C12_07890 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain D9C12_07895 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain D9C12_07895 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain D9C12_07905 PF14168 YjzC-like protein D9C12_07910 PF11151 Protein of unknown function (DUF2929) D9C12_07925 PF02608 ABC transporter substrate-binding protein PnrA-like D9C12_07930 PF10815 ComZ D9C12_07940 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal D9C12_07940 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III D9C12_07945 PF02801 Beta-ketoacyl synthase, C-terminal domain D9C12_07945 PF00109 Beta-ketoacyl synthase, N-terminal domain D9C12_07950 PF10026 Predicted Zn-dependent protease (DUF2268) D9C12_07955 PF00005 ABC transporter D9C12_07955 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D9C12_07960 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D9C12_07960 PF00005 ABC transporter D9C12_07965 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D9C12_07970 PF00528 Binding-protein-dependent transport system inner membrane component D9C12_07975 PF12911 N-terminal TM domain of oligopeptide transport permease C D9C12_07975 PF00528 Binding-protein-dependent transport system inner membrane component D9C12_07980 PF12227 Protein of unknown function (DUF3603) D9C12_07985 PF00579 tRNA synthetases class I (W and Y) D9C12_07990 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D9C12_07995 PF00528 Binding-protein-dependent transport system inner membrane component D9C12_08000 PF00528 Binding-protein-dependent transport system inner membrane component D9C12_08000 PF12911 N-terminal TM domain of oligopeptide transport permease C D9C12_08005 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D9C12_08005 PF00005 ABC transporter D9C12_08010 PF00005 ABC transporter D9C12_08010 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D9C12_08015 PF07690 Major Facilitator Superfamily D9C12_08025 PF03960 ArsC family D9C12_08030 PF03741 Integral membrane protein TerC family D9C12_08040 PF05389 Negative regulator of genetic competence (MecA) D9C12_08050 PF06054 Competence protein CoiA-like family D9C12_08055 PF01432 Peptidase family M3 D9C12_08055 PF08439 Oligopeptidase F D9C12_08075 PF01152 Bacterial-like globin D9C12_08080 PF01464 Transglycosylase SLT domain D9C12_08085 PF01928 CYTH domain D9C12_08095 PF04607 Region found in RelA / SpoT proteins D9C12_08100 PF01513 ATP-NAD kinase D9C12_08105 PF00849 RNA pseudouridylate synthase D9C12_08110 PF00149 Calcineurin-like phosphoesterase D9C12_08115 PF00999 Sodium/hydrogen exchanger family D9C12_08115 PF02254 TrkA-N domain D9C12_08115 PF02080 TrkA-C domain D9C12_08120 PF03070 TENA/THI-4/PQQC family D9C12_08125 PF02581 Thiamine monophosphate synthase D9C12_08130 PF01266 FAD dependent oxidoreductase D9C12_08135 PF02597 ThiS family D9C12_08140 PF05690 Thiazole biosynthesis protein ThiG D9C12_08145 PF00899 ThiF family D9C12_08150 PF08543 Phosphomethylpyrimidine kinase D9C12_08160 PF14153 Spore coat protein CotO D9C12_08165 PF10612 Spore coat protein Z D9C12_08175 PF07552 Spore Coat Protein X and V domain D9C12_08190 PF07098 Protein of unknown function (DUF1360) D9C12_08205 PF14069 Stage VI sporulation protein F D9C12_08210 PF00580 UvrD/REP helicase N-terminal domain D9C12_08210 PF13361 UvrD-like helicase C-terminal domain D9C12_08220 PF13673 Acetyltransferase (GNAT) domain D9C12_08230 PF00756 Putative esterase D9C12_08235 PF01053 Cys/Met metabolism PLP-dependent enzyme D9C12_08240 PF01053 Cys/Met metabolism PLP-dependent enzyme D9C12_08245 PF13302 Acetyltransferase (GNAT) domain D9C12_08250 PF05684 Protein of unknown function (DUF819) D9C12_08285 PF01381 Helix-turn-helix D9C12_08315 PF00534 Glycosyl transferases group 1 D9C12_08365 PF17247 Family of unknown function (DUF5316) D9C12_08410 PF03992 Antibiotic biosynthesis monooxygenase D9C12_08420 PF05043 Mga helix-turn-helix domain D9C12_08420 PF08279 HTH domain D9C12_08420 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D9C12_08420 PF00874 PRD domain D9C12_08425 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D9C12_08425 PF02378 Phosphotransferase system, EIIC D9C12_08425 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D9C12_08430 PF01238 Phosphomannose isomerase type I D9C12_08435 PF11208 Protein of unknown function (DUF2992) D9C12_08445 PF00872 Transposase, Mutator family D9C12_08450 PF13302 Acetyltransferase (GNAT) domain D9C12_08460 PF04073 Aminoacyl-tRNA editing domain D9C12_08465 PF13783 Domain of unknown function (DUF4177) D9C12_08470 PF14154 Domain of unknown function (DUF4306) D9C12_08480 PF01040 UbiA prenyltransferase family D9C12_08490 PF01522 Polysaccharide deacetylase D9C12_08490 PF13739 Deacetylase PdaC D9C12_08490 PF11738 Protein of unknown function (DUF3298) D9C12_08495 PF10901 Protein of unknown function (DUF2690) D9C12_08500 PF14070 Putative motility protein D9C12_08510 PF10990 Protein of unknown function (DUF2809) D9C12_08515 PF14172 Domain of unknown function (DUF4309) D9C12_08520 PF12838 4Fe-4S dicluster domain D9C12_08520 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D9C12_08520 PF00384 Molybdopterin oxidoreductase D9C12_08520 PF01568 Molydopterin dinucleotide binding domain D9C12_08520 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region D9C12_08525 PF07849 Protein of unknown function (DUF1641) D9C12_08530 PF11611 Domain of unknown function (DUF4352) D9C12_08535 PF00293 NUDIX domain D9C12_08545 PF00067 Cytochrome P450 D9C12_08550 PF04101 Glycosyltransferase family 28 C-terminal domain D9C12_08560 PF02602 Uroporphyrinogen-III synthase HemD D9C12_08570 PF03649 Uncharacterised protein family (UPF0014) D9C12_08575 PF00005 ABC transporter D9C12_08580 PF13536 Putative multidrug resistance efflux transporter D9C12_08590 PF07849 Protein of unknown function (DUF1641) D9C12_08595 PF07992 Pyridine nucleotide-disulphide oxidoreductase D9C12_08600 PF02614 Glucuronate isomerase D9C12_08610 PF02615 Malate/L-lactate dehydrogenase D9C12_08615 PF08240 Alcohol dehydrogenase GroES-like domain D9C12_08615 PF00107 Zinc-binding dehydrogenase D9C12_08620 PF03786 D-mannonate dehydratase (UxuA) D9C12_08625 PF00106 short chain dehydrogenase D9C12_08630 PF07690 Major Facilitator Superfamily D9C12_08635 PF00356 Bacterial regulatory proteins, lacI family D9C12_08640 PF08125 Mannitol dehydrogenase C-terminal domain D9C12_08640 PF01232 Mannitol dehydrogenase Rossmann domain D9C12_08645 PF04295 D-galactarate dehydratase / Altronate hydrolase, C terminus D9C12_08645 PF08666 SAF domain D9C12_08650 PF01925 Sulfite exporter TauE/SafE D9C12_08660 PF05163 DinB family D9C12_08680 PF18801 response regulator aspartate phosphatase H, N terminal D9C12_08695 PF01471 Putative peptidoglycan binding domain D9C12_08695 PF01476 LysM domain D9C12_08695 PF01510 N-acetylmuramoyl-L-alanine amidase D9C12_08700 PF08000 Bacterial PH domain D9C12_08705 PF05908 Poly-gamma-glutamate hydrolase D9C12_08710 PF05067 Manganese containing catalase D9C12_08715 PF06114 IrrE N-terminal-like domain D9C12_08720 PF01381 Helix-turn-helix D9C12_08735 PF01695 IstB-like ATP binding protein D9C12_08750 PF17356 Phage-like element PBSX protein XtrA D9C12_08755 PF08281 Sigma-70, region 4 D9C12_08760 PF03592 Terminase small subunit D9C12_08760 PF10668 Phage terminase small subunit D9C12_08765 PF17288 Terminase RNAseH like domain D9C12_08765 PF04466 Phage terminase large subunit D9C12_08770 PF04860 Phage portal protein D9C12_08775 PF14550 Putative phage serine protease XkdF D9C12_08780 PF05065 Phage capsid family D9C12_08785 PF11436 Protein of unknown function (DUF3199) D9C12_08790 PF12206 Domain of unknown function (DUF3599) D9C12_08795 PF04883 Bacteriophage HK97-gp10, putative tail-component D9C12_08810 PF04984 Phage tail sheath protein subtilisin-like domain D9C12_08810 PF17481 Phage tail sheath protein beta-sandwich domain D9C12_08810 PF17482 Phage tail sheath C-terminal domain D9C12_08815 PF09393 Phage tail tube protein D9C12_08820 PF08890 Phage XkdN-like tail assembly chaperone protein, TAC D9C12_08830 PF01464 Transglycosylase SLT domain D9C12_08830 PF01464 Transglycosylase SLT domain D9C12_08830 PF01464 Transglycosylase SLT domain D9C12_08835 PF01476 LysM domain D9C12_08845 PF10844 Protein of unknown function (DUF2577) D9C12_08850 PF10934 Protein of unknown function (DUF2634) D9C12_08855 PF04865 Baseplate J-like protein D9C12_08860 PF10076 Uncharacterised protein conserved in bacteria (DUF2313) D9C12_08875 PF09636 XkdW protein D9C12_08880 PF09693 Phage uncharacterised protein (Phage_XkdX) D9C12_08890 PF10779 Haemolysin XhlA D9C12_08895 PF04688 SPP1 phage holin D9C12_08900 PF01476 LysM domain D9C12_08900 PF01510 N-acetylmuramoyl-L-alanine amidase D9C12_08900 PF01471 Putative peptidoglycan binding domain D9C12_08910 PF14185 Antitoxin SpoIISB, type II toxin-antitoxin system D9C12_08915 PF14171 Toxin SpoIISA, type II toxin-antitoxin system D9C12_08920 PF01384 Phosphate transporter family D9C12_08925 PF01865 Protein of unknown function DUF47 D9C12_08930 PF13520 Amino acid permease D9C12_08935 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D9C12_08940 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase D9C12_08945 PF00535 Glycosyl transferase family 2 D9C12_08950 PF13180 PDZ domain D9C12_08955 PF14748 Pyrroline-5-carboxylate reductase dimerisation D9C12_08955 PF03807 NADP oxidoreductase coenzyme F420-dependent D9C12_08960 PF04951 D-aminopeptidase D9C12_08965 PF00528 Binding-protein-dependent transport system inner membrane component D9C12_08970 PF12911 N-terminal TM domain of oligopeptide transport permease C D9C12_08970 PF00528 Binding-protein-dependent transport system inner membrane component D9C12_08975 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D9C12_08975 PF00005 ABC transporter D9C12_08980 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle D9C12_08985 PF17676 LD-carboxypeptidase C-terminal domain D9C12_08985 PF02016 LD-carboxypeptidase N-terminal domain D9C12_08990 PF13378 Enolase C-terminal domain-like D9C12_08990 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain D9C12_08995 PF00877 NlpC/P60 family D9C12_09000 PF08352 Oligopeptide/dipeptide transporter, C-terminal region D9C12_09000 PF00005 ABC transporter D9C12_09005 PF10282 Lactonase, 7-bladed beta-propeller D9C12_09015 PF03061 Thioesterase superfamily D9C12_09020 PF00042 Globin D9C12_09020 PF00970 Oxidoreductase FAD-binding domain D9C12_09020 PF00175 Oxidoreductase NAD-binding domain D9C12_09030 PF04239 Protein of unknown function (DUF421) D9C12_09035 PF12867 DinB superfamily D9C12_09040 PF13302 Acetyltransferase (GNAT) domain D9C12_09045 PF00893 Small Multidrug Resistance protein D9C12_09050 PF00893 Small Multidrug Resistance protein D9C12_09055 PF01842 ACT domain D9C12_09055 PF00551 Formyl transferase D9C12_09060 PF01472 PUA domain D9C12_09060 PF00696 Amino acid kinase family D9C12_09065 PF00171 Aldehyde dehydrogenase family D9C12_09070 PF02566 OsmC-like protein D9C12_09075 PF01047 MarR family D9C12_09080 PF02566 OsmC-like protein D9C12_09090 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D9C12_09095 PF01717 Cobalamin-independent synthase, Catalytic domain D9C12_09095 PF08267 Cobalamin-independent synthase, N-terminal domain D9C12_09100 PF00082 Subtilase family D9C12_09105 PF01740 STAS domain D9C12_09110 PF02361 Cobalt transport protein D9C12_09115 PF00005 ABC transporter D9C12_09120 PF09819 ABC-type cobalt transport system, permease component D9C12_09125 PF07615 YKOF-related Family D9C12_09130 PF00486 Transcriptional regulatory protein, C terminal D9C12_09130 PF00072 Response regulator receiver domain D9C12_09135 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D9C12_09135 PF00672 HAMP domain D9C12_09135 PF00512 His Kinase A (phospho-acceptor) domain D9C12_09140 PF03413 Peptidase propeptide and YPEB domain D9C12_09145 PF03413 Peptidase propeptide and YPEB domain D9C12_09150 PF11132 Transcriptional regulator protein (SplA) D9C12_09160 PF03448 MgtE intracellular N domain D9C12_09160 PF00571 CBS domain D9C12_09160 PF01769 Divalent cation transporter D9C12_09165 PF13411 MerR HTH family regulatory protein D9C12_09180 PF01047 MarR family D9C12_09185 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase D9C12_09195 PF00149 Calcineurin-like phosphoesterase D9C12_09205 PF00535 Glycosyl transferase family 2 D9C12_09210 PF01068 ATP dependent DNA ligase domain D9C12_09215 PF02735 Ku70/Ku80 beta-barrel domain D9C12_09220 PF00990 Diguanylate cyclase, GGDEF domain D9C12_09220 PF00563 EAL domain D9C12_09220 PF03707 Bacterial signalling protein N terminal repeat D9C12_09225 PF09335 SNARE associated Golgi protein D9C12_09230 PF03741 Integral membrane protein TerC family D9C12_09235 PF04542 Sigma-70 region 2 D9C12_09240 PF12791 Anti-sigma factor N-terminus D9C12_09245 PF00269 Small, acid-soluble spore proteins, alpha/beta type D9C12_09250 PF08876 Domain of unknown function (DUF1836) D9C12_09255 PF01435 Peptidase family M48 D9C12_09260 PF02386 Cation transport protein D9C12_09275 PF01757 Acyltransferase family D9C12_09280 PF13426 PAS domain D9C12_09280 PF13188 PAS domain D9C12_09280 PF00512 His Kinase A (phospho-acceptor) domain D9C12_09280 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D9C12_09280 PF00989 PAS fold D9C12_09285 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain D9C12_09285 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain D9C12_09295 PF01008 Initiation factor 2 subunit family D9C12_09300 PF01636 Phosphotransferase enzyme family D9C12_09305 PF00795 Carbon-nitrogen hydrolase D9C12_09310 PF00155 Aminotransferase class I and II D9C12_09315 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain D9C12_09315 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain D9C12_09325 PF00596 Class II Aldolase and Adducin N-terminal domain D9C12_09330 PF03079 ARD/ARD' family D9C12_09335 PF06803 Protein of unknown function (DUF1232) D9C12_09340 PF09388 Spo0E like sporulation regulatory protein D9C12_09350 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D9C12_09350 PF02743 Cache domain D9C12_09350 PF00512 His Kinase A (phospho-acceptor) domain D9C12_09355 PF01047 MarR family D9C12_09360 PF00691 OmpA family D9C12_09360 PF13677 Membrane MotB of proton-channel complex MotA/MotB D9C12_09365 PF01618 MotA/TolQ/ExbB proton channel family D9C12_09370 PF07724 AAA domain (Cdc48 subfamily) D9C12_09370 PF10431 C-terminal, D2-small domain, of ClpB protein D9C12_09370 PF00004 ATPase family associated with various cellular activities (AAA) D9C12_09370 PF17871 AAA lid domain D9C12_09380 PF06508 Queuosine biosynthesis protein QueC D9C12_09385 PF01242 6-pyruvoyl tetrahydropterin synthase D9C12_09390 PF04055 Radical SAM superfamily D9C12_09395 PF14489 QueF-like protein D9C12_09400 PF11514 Protein of unknown function (DUF3219) D9C12_09405 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) D9C12_09415 PF07486 Cell Wall Hydrolase D9C12_09420 PF01943 Polysaccharide biosynthesis protein D9C12_09425 PF00578 AhpC/TSA family D9C12_09440 PF00557 Metallopeptidase family M24 D9C12_09440 PF01321 Creatinase/Prolidase N-terminal domain D9C12_09445 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family D9C12_09445 PF00356 Bacterial regulatory proteins, lacI family D9C12_09455 PF00367 phosphotransferase system, EIIB D9C12_09455 PF02378 Phosphotransferase system, EIIC D9C12_09455 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 D9C12_09460 PF00381 PTS HPr component phosphorylation site D9C12_09465 PF00391 PEP-utilising enzyme, mobile domain D9C12_09465 PF02896 PEP-utilising enzyme, TIM barrel domain D9C12_09465 PF05524 PEP-utilising enzyme, N-terminal D9C12_09470 PF11132 Transcriptional regulator protein (SplA) D9C12_09480 PF00583 Acetyltransferase (GNAT) family D9C12_09485 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D9C12_09485 PF02743 Cache domain D9C12_09485 PF00672 HAMP domain D9C12_09490 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase D9C12_09490 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D9C12_09505 PF00872 Transposase, Mutator family D9C12_09515 PF00188 Cysteine-rich secretory protein family D9C12_09520 PF03717 Penicillin-binding Protein dimerisation domain D9C12_09520 PF00905 Penicillin binding protein transpeptidase domain D9C12_09525 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D9C12_09525 PF00512 His Kinase A (phospho-acceptor) domain D9C12_09525 PF00989 PAS fold D9C12_09525 PF08447 PAS fold D9C12_09530 PF00155 Aminotransferase class I and II D9C12_09540 PF00072 Response regulator receiver domain D9C12_09540 PF01584 CheW-like domain D9C12_09545 PF14177 YkyB-like protein D9C12_09550 PF07690 Major Facilitator Superfamily D9C12_09555 PF01476 LysM domain D9C12_09555 PF03734 L,D-transpeptidase catalytic domain D9C12_09560 PF00149 Calcineurin-like phosphoesterase D9C12_09560 PF10518 TAT (twin-arginine translocation) pathway signal sequence D9C12_09570 PF00563 EAL domain D9C12_09570 PF10388 EAL-domain associated signalling protein domain D9C12_09575 PF08796 Protein of unknown function (DUF1797) D9C12_09580 PF04308 Ribonuclease H-like D9C12_09585 PF14156 Antirepressor AbbA D9C12_09595 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D9C12_09595 PF03466 LysR substrate binding domain D9C12_09600 PF00258 Flavodoxin D9C12_09610 PF00258 Flavodoxin D9C12_09615 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal D9C12_09615 PF00132 Bacterial transferase hexapeptide (six repeats) D9C12_09615 PF14602 Hexapeptide repeat of succinyl-transferase D9C12_09620 PF07687 Peptidase dimerisation domain D9C12_09620 PF01546 Peptidase family M20/M25/M40 D9C12_09625 PF03698 Uncharacterised protein family (UPF0180) D9C12_09630 PF00924 Mechanosensitive ion channel D9C12_09635 PF10417 C-terminal domain of 1-Cys peroxiredoxin D9C12_09635 PF00578 AhpC/TSA family D9C12_09640 PF00578 AhpC/TSA family D9C12_09660 PF12804 MobA-like NTP transferase domain D9C12_09665 PF00899 ThiF family D9C12_09670 PF00994 Probable molybdopterin binding domain D9C12_09670 PF03453 MoeA N-terminal region (domain I and II) D9C12_09670 PF03454 MoeA C-terminal region (domain IV) D9C12_09675 PF03205 Molybdopterin guanine dinucleotide synthesis protein B D9C12_09680 PF02391 MoaE protein D9C12_09685 PF02597 ThiS family D9C12_09690 PF00005 ABC transporter D9C12_09690 PF00664 ABC transporter transmembrane region D9C12_09695 PF00005 ABC transporter D9C12_09695 PF00664 ABC transporter transmembrane region D9C12_09700 PF04893 Yip1 domain D9C12_09705 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D9C12_09710 PF00005 ABC transporter D9C12_09715 PF02687 FtsX-like permease family D9C12_09715 PF12704 MacB-like periplasmic core domain D9C12_09720 PF08220 DeoR-like helix-turn-helix domain D9C12_09720 PF00455 DeoR C terminal sensor domain D9C12_09725 PF00294 pfkB family carbohydrate kinase D9C12_09730 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D9C12_09730 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D9C12_09735 PF10502 Signal peptidase, peptidase S26 D9C12_09745 PF00005 ABC transporter D9C12_09745 PF12848 ABC transporter D9C12_09750 PF02558 Ketopantoate reductase PanE/ApbA D9C12_09750 PF08546 Ketopantoate reductase PanE/ApbA C terminal D9C12_09760 PF02073 Thermophilic metalloprotease (M29) D9C12_09765 PF17447 Uncharacterized YkpC-like D9C12_09775 PF18277 AbrB C-terminal domain D9C12_09775 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin D9C12_09780 PF00512 His Kinase A (phospho-acceptor) domain D9C12_09780 PF00989 PAS fold D9C12_09780 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D9C12_09785 PF01609 Transposase DDE domain D9C12_09795 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like D9C12_09800 PF02254 TrkA-N domain D9C12_09800 PF02080 TrkA-C domain D9C12_09805 PF13382 Adenine deaminase C-terminal domain D9C12_09805 PF01979 Amidohydrolase family D9C12_09810 PF00753 Metallo-beta-lactamase superfamily D9C12_09810 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain D9C12_09810 PF17770 Ribonuclease J C-terminal domain D9C12_09825 PF01327 Polypeptide deformylase D9C12_09835 PF10368 Putative cell-wall binding lipoprotein D9C12_09840 PF00676 Dehydrogenase E1 component D9C12_09845 PF02780 Transketolase, C-terminal domain D9C12_09845 PF02779 Transketolase, pyrimidine binding domain D9C12_09850 PF02817 e3 binding domain D9C12_09850 PF00364 Biotin-requiring enzyme D9C12_09850 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D9C12_09855 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D9C12_09855 PF07992 Pyridine nucleotide-disulphide oxidoreductase D9C12_09865 PF13790 SR1 protein D9C12_09875 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain D9C12_09875 PF01276 Orn/Lys/Arg decarboxylase, major domain D9C12_09880 PF05256 Uncharacterised protein family (UPF0223) D9C12_09885 PF06335 Protein of unknown function (DUF1054) D9C12_09895 PF00459 Inositol monophosphatase family D9C12_09900 PF00583 Acetyltransferase (GNAT) family D9C12_09905 PF04072 Leucine carboxyl methyltransferase D9C12_09915 PF03413 Peptidase propeptide and YPEB domain D9C12_09915 PF07504 Fungalysin/Thermolysin Propeptide Motif D9C12_09915 PF02868 Thermolysin metallopeptidase, alpha-helical domain D9C12_09915 PF01447 Thermolysin metallopeptidase, catalytic domain D9C12_09935 PF13490 Putative zinc-finger D9C12_09945 PF17259 Family of unknown function (DUF5325) D9C12_09955 PF14036 YlaH-like protein D9C12_09960 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) D9C12_09965 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) D9C12_09970 PF13638 PIN domain D9C12_09970 PF02562 PhoH-like protein D9C12_09980 PF04960 Glutaminase D9C12_09985 PF07408 Protein of unknown function (DUF1507) D9C12_09990 PF01098 Cell cycle protein D9C12_09995 PF00289 Biotin carboxylase, N-terminal domain D9C12_09995 PF02436 Conserved carboxylase domain D9C12_09995 PF02785 Biotin carboxylase C-terminal domain D9C12_09995 PF00364 Biotin-requiring enzyme D9C12_09995 PF00682 HMGL-like D9C12_09995 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D9C12_10005 PF02628 Cytochrome oxidase assembly protein D9C12_10010 PF01040 UbiA prenyltransferase family D9C12_10015 PF00116 Cytochrome C oxidase subunit II, periplasmic domain D9C12_10015 PF02790 Cytochrome C oxidase subunit II, transmembrane domain D9C12_10015 PF00034 Cytochrome c D9C12_10020 PF00115 Cytochrome C and Quinol oxidase polypeptide I D9C12_10025 PF00510 Cytochrome c oxidase subunit III D9C12_10030 PF03626 Prokaryotic Cytochrome C oxidase subunit IV D9C12_10035 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) D9C12_10040 PF08868 YugN-like family D9C12_10045 PF00571 CBS domain D9C12_10050 PF00188 Cysteine-rich secretory protein family D9C12_10050 PF14504 CAP-associated N-terminal D9C12_10055 PF14071 Putative coat protein D9C12_10060 PF14003 YlbE-like protein D9C12_10065 PF06133 Control of competence regulator ComK, YlbF/YmcA D9C12_10070 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) D9C12_10080 PF01467 Cytidylyltransferase-like D9C12_10085 PF07670 Nucleoside recognition D9C12_10090 PF01734 Patatin-like phospholipase D9C12_10095 PF05362 Lon protease (S16) C-terminal proteolytic domain D9C12_10095 PF13180 PDZ domain D9C12_10100 PF05636 HIGH Nucleotidyl Transferase D9C12_10110 PF02620 Large ribosomal RNA subunit accumulation protein YceD D9C12_10115 PF01783 Ribosomal L32p protein family D9C12_10125 PF00583 Acetyltransferase (GNAT) family D9C12_10130 PF08546 Ketopantoate reductase PanE/ApbA C terminal D9C12_10130 PF02558 Ketopantoate reductase PanE/ApbA D9C12_10135 PF10079 Bacillithiol biosynthesis BshC D9C12_10140 PF02381 MraZ protein, putative antitoxin-like D9C12_10145 PF01795 MraW methylase family D9C12_10160 PF03717 Penicillin-binding Protein dimerisation domain D9C12_10160 PF00905 Penicillin binding protein transpeptidase domain D9C12_10160 PF03793 PASTA domain D9C12_10165 PF02875 Mur ligase family, glutamate ligase domain D9C12_10165 PF08245 Mur ligase middle domain D9C12_10165 PF01225 Mur ligase family, catalytic domain D9C12_10170 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 D9C12_10170 PF00953 Glycosyl transferase family 4 D9C12_10175 PF02875 Mur ligase family, glutamate ligase domain D9C12_10175 PF08245 Mur ligase middle domain D9C12_10180 PF01098 Cell cycle protein D9C12_10185 PF03033 Glycosyltransferase family 28 N-terminal domain D9C12_10185 PF04101 Glycosyltransferase family 28 C-terminal domain D9C12_10190 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain D9C12_10190 PF01565 FAD binding domain D9C12_10195 PF08478 POTRA domain, FtsQ-type D9C12_10200 PF05949 Bacterial protein of unknown function (DUF881) D9C12_10205 PF05949 Bacterial protein of unknown function (DUF881) D9C12_10210 PF06947 Protein of unknown function (DUF1290) D9C12_10215 PF02491 SHS2 domain inserted in FTSA D9C12_10220 PF12327 FtsZ family, C-terminal domain D9C12_10220 PF00091 Tubulin/FtsZ family, GTPase domain D9C12_10230 PF03419 Sporulation factor SpoIIGA D9C12_10235 PF04542 Sigma-70 region 2 D9C12_10235 PF04545 Sigma-70, region 4 D9C12_10240 PF04545 Sigma-70, region 4 D9C12_10240 PF04542 Sigma-70 region 2 D9C12_10240 PF04539 Sigma-70 region 3 D9C12_10245 PF00005 ABC transporter D9C12_10255 PF05239 PRC-barrel domain D9C12_10265 PF01168 Alanine racemase, N-terminal domain D9C12_10270 PF04472 Cell division protein SepF D9C12_10275 PF02325 YGGT family D9C12_10280 PF01479 S4 domain D9C12_10280 PF17774 Putative RNA-binding domain in YlmH D9C12_10285 PF05103 DivIVA protein D9C12_10290 PF08264 Anticodon-binding domain of tRNA D9C12_10290 PF00133 tRNA synthetases class I (I, L, M and V) D9C12_10300 PF01258 Prokaryotic dksA/traR C4-type zinc finger D9C12_10305 PF01252 Signal peptidase (SPase) II D9C12_10310 PF00849 RNA pseudouridylate synthase D9C12_10310 PF01479 S4 domain D9C12_10315 PF00156 Phosphoribosyl transferase domain D9C12_10320 PF00860 Permease family D9C12_10325 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain D9C12_10325 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain D9C12_10330 PF01979 Amidohydrolase family D9C12_10335 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain D9C12_10335 PF00117 Glutamine amidotransferase class-I D9C12_10340 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D9C12_10340 PF02142 MGS-like domain D9C12_10340 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain D9C12_10345 PF00175 Oxidoreductase NAD-binding domain D9C12_10345 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B D9C12_10350 PF01180 Dihydroorotate dehydrogenase D9C12_10355 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family D9C12_10360 PF00156 Phosphoribosyl transferase domain D9C12_10365 PF01507 Phosphoadenosine phosphosulfate reductase family D9C12_10370 PF01384 Phosphate transporter family D9C12_10375 PF01747 ATP-sulfurylase D9C12_10375 PF14306 PUA-like domain D9C12_10385 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases D9C12_10390 PF01903 CbiX D9C12_10410 PF08340 Domain of unknown function (DUF1732) D9C12_10410 PF03755 YicC-like family, N-terminal region D9C12_10415 PF04025 Domain of unknown function (DUF370) D9C12_10420 PF00625 Guanylate kinase D9C12_10425 PF01192 RNA polymerase Rpb6 D9C12_10430 PF04127 DNA / pantothenate metabolism flavoprotein D9C12_10430 PF02441 Flavoprotein D9C12_10435 PF18074 Primosomal protein N C-terminal domain D9C12_10435 PF17764 3′ DNA-binding domain (3′BD) D9C12_10435 PF18319 PriA DNA helicase Cys-rich region (CRR) domain D9C12_10435 PF04851 Type III restriction enzyme, res subunit D9C12_10435 PF00271 Helicase conserved C-terminal domain D9C12_10440 PF01327 Polypeptide deformylase D9C12_10445 PF02911 Formyl transferase, C-terminal domain D9C12_10445 PF00551 Formyl transferase D9C12_10450 PF01189 16S rRNA methyltransferase RsmB/F D9C12_10450 PF01029 NusB family D9C12_10455 PF04055 Radical SAM superfamily D9C12_10465 PF03793 PASTA domain D9C12_10465 PF00069 Protein kinase domain D9C12_10470 PF03193 RsgA GTPase D9C12_10470 PF16745 RsgA N-terminal domain D9C12_10475 PF00834 Ribulose-phosphate 3 epimerase family D9C12_10480 PF04263 Thiamin pyrophosphokinase, catalytic domain D9C12_10480 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain D9C12_10485 PF08183 Stage V sporulation protein family D9C12_10490 PF00830 Ribosomal L28 family D9C12_10495 PF03780 Asp23 family, cell envelope-related function D9C12_10500 PF02734 DAK2 domain D9C12_10500 PF13684 Dihydroxyacetone kinase family D9C12_10505 PF01842 ACT domain D9C12_10505 PF03315 Serine dehydratase beta chain D9C12_10510 PF03313 Serine dehydratase alpha chain D9C12_10515 PF00270 DEAD/DEAH box helicase D9C12_10515 PF00271 Helicase conserved C-terminal domain D9C12_10515 PF17191 RecG wedge domain D9C12_10520 PF03061 Thioesterase superfamily D9C12_10525 PF02504 Fatty acid synthesis protein D9C12_10530 PF00698 Acyl transferase domain D9C12_10540 PF00550 Phosphopantetheine attachment site D9C12_10545 PF14622 Ribonuclease-III-like D9C12_10545 PF00035 Double-stranded RNA binding motif D9C12_10550 PF02463 RecF/RecN/SMC N terminal domain D9C12_10550 PF06470 SMC proteins Flexible Hinge Domain D9C12_10555 PF00448 SRP54-type protein, GTPase domain D9C12_10555 PF02881 SRP54-type protein, helical bundle domain D9C12_10560 PF02369 Bacterial Ig-like domain (group 1) D9C12_10565 PF04297 Putative helix-turn-helix protein, YlxM / p13 like D9C12_10570 PF02978 Signal peptide binding domain D9C12_10570 PF02881 SRP54-type protein, helical bundle domain D9C12_10570 PF00448 SRP54-type protein, GTPase domain D9C12_10575 PF00886 Ribosomal protein S16 D9C12_10585 PF11068 YlqD protein D9C12_10590 PF05239 PRC-barrel domain D9C12_10590 PF01782 RimM N-terminal domain D9C12_10595 PF01746 tRNA (Guanine-1)-methyltransferase D9C12_10600 PF01245 Ribosomal protein L19 D9C12_10605 PF01926 50S ribosome-binding GTPase D9C12_10610 PF01351 Ribonuclease HII D9C12_10620 PF01312 FlhB HrpN YscU SpaS Family D9C12_10625 PF08442 ATP-grasp domain D9C12_10625 PF00549 CoA-ligase D9C12_10630 PF00549 CoA-ligase D9C12_10630 PF02629 CoA binding domain D9C12_10635 PF02481 DNA recombination-mediator protein A D9C12_10640 PF01396 Topoisomerase DNA binding C4 zinc finger D9C12_10640 PF01751 Toprim domain D9C12_10640 PF01131 DNA topoisomerase D9C12_10645 PF01134 Glucose inhibited division protein A D9C12_10650 PF02899 Phage integrase, N-terminal SAM-like domain D9C12_10650 PF00589 Phage integrase family D9C12_10655 PF00227 Proteasome subunit D9C12_10660 PF10431 C-terminal, D2-small domain, of ClpB protein D9C12_10660 PF00004 ATPase family associated with various cellular activities (AAA) D9C12_10660 PF07724 AAA domain (Cdc48 subfamily) D9C12_10665 PF08222 CodY helix-turn-helix domain D9C12_10665 PF06018 CodY GAF-like domain D9C12_10670 PF00460 Flagella basal body rod protein D9C12_10675 PF00460 Flagella basal body rod protein D9C12_10675 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D9C12_10680 PF02049 Flagellar hook-basal body complex protein FliE D9C12_10685 PF01514 Secretory protein of YscJ/FliF family D9C12_10685 PF08345 Flagellar M-ring protein C-terminal D9C12_10690 PF14841 FliG middle domain D9C12_10690 PF14842 FliG N-terminal domain D9C12_10690 PF01706 FliG C-terminal domain D9C12_10695 PF02108 Flagellar assembly protein FliH D9C12_10700 PF18269 T3SS EscN ATPase C-terminal domain D9C12_10700 PF02874 ATP synthase alpha/beta family, beta-barrel domain D9C12_10700 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D9C12_10705 PF02050 Flagellar FliJ protein D9C12_10710 PF03448 MgtE intracellular N domain D9C12_10715 PF02120 Flagellar hook-length control protein FliK D9C12_10720 PF03963 Flagellar hook capping protein - N-terminal region D9C12_10725 PF00460 Flagella basal body rod protein D9C12_10725 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D9C12_10730 PF06289 Flagellar and Swarming motility proteins D9C12_10735 PF03748 Flagellar basal body-associated protein FliL D9C12_10740 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term D9C12_10740 PF02154 Flagellar motor switch protein FliM D9C12_10745 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term D9C12_10745 PF04509 CheC-like family D9C12_10750 PF00072 Response regulator receiver domain D9C12_10755 PF04347 Flagellar biosynthesis protein, FliO D9C12_10760 PF00813 FliP family D9C12_10765 PF01313 Bacterial export proteins, family 3 D9C12_10770 PF01311 Bacterial export proteins, family 1 D9C12_10775 PF01312 FlhB HrpN YscU SpaS Family D9C12_10780 PF00771 FHIPEP family D9C12_10785 PF00448 SRP54-type protein, GTPase domain D9C12_10790 PF10609 NUBPL iron-transfer P-loop NTPase D9C12_10795 PF01339 CheB methylesterase D9C12_10795 PF00072 Response regulator receiver domain D9C12_10800 PF02895 Signal transducing histidine kinase, homodimeric domain D9C12_10800 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D9C12_10800 PF01584 CheW-like domain D9C12_10800 PF01627 Hpt domain D9C12_10800 PF07194 P2 response regulator binding domain D9C12_10805 PF01584 CheW-like domain D9C12_10810 PF04509 CheC-like family D9C12_10815 PF03975 CheD chemotactic sensory transduction D9C12_10820 PF04542 Sigma-70 region 2 D9C12_10820 PF04539 Sigma-70 region 3 D9C12_10820 PF04545 Sigma-70, region 4 D9C12_10830 PF00318 Ribosomal protein S2 D9C12_10835 PF00889 Elongation factor TS D9C12_10840 PF00696 Amino acid kinase family D9C12_10845 PF01765 Ribosome recycling factor D9C12_10850 PF01255 Putative undecaprenyl diphosphate synthase D9C12_10860 PF13288 DXP reductoisomerase C-terminal domain D9C12_10860 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase D9C12_10860 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain D9C12_10865 PF02163 Peptidase family M50 D9C12_10865 PF17820 PDZ domain D9C12_10870 PF04073 Aminoacyl-tRNA editing domain D9C12_10870 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D9C12_10870 PF03129 Anticodon binding domain D9C12_10875 PF11490 DNA polymerase III polC-type N-terminus II D9C12_10875 PF00929 Exonuclease D9C12_10875 PF02811 PHP domain D9C12_10875 PF14579 Helix-hairpin-helix motif D9C12_10875 PF07733 Bacterial DNA polymerase III alpha NTPase domain D9C12_10875 PF17657 Bacterial DNA polymerase III alpha subunit finger domain D9C12_10875 PF14480 DNA polymerase III polC-type N-terminus I D9C12_10880 PF02576 RimP N-terminal domain D9C12_10880 PF17384 RimP C-terminal SH3 domain D9C12_10885 PF13184 NusA-like KH domain D9C12_10885 PF00575 S1 RNA binding domain D9C12_10885 PF08529 NusA N-terminal domain D9C12_10890 PF04296 Protein of unknown function (DUF448) D9C12_10895 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family D9C12_10900 PF04760 Translation initiation factor IF-2, N-terminal region D9C12_10900 PF11987 Translation-initiation factor 2 D9C12_10900 PF00009 Elongation factor Tu GTP binding domain D9C12_10905 PF04456 Protein of unknown function (DUF503) D9C12_10910 PF02033 Ribosome-binding factor A D9C12_10915 PF01509 TruB family pseudouridylate synthase (N terminal domain) D9C12_10915 PF16198 tRNA pseudouridylate synthase B C-terminal domain D9C12_10920 PF01687 Riboflavin kinase D9C12_10920 PF06574 FAD synthetase D9C12_10925 PF00312 Ribosomal protein S15 D9C12_10930 PF03725 3' exoribonuclease family, domain 2 D9C12_10930 PF01138 3' exoribonuclease family, domain 1 D9C12_10930 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain D9C12_10930 PF00013 KH domain D9C12_10930 PF00575 S1 RNA binding domain D9C12_10935 PF01522 Polysaccharide deacetylase D9C12_10940 PF00675 Insulinase (Peptidase family M16) D9C12_10940 PF05193 Peptidase M16 inactive domain D9C12_10945 PF05239 PRC-barrel domain D9C12_10950 PF16924 Dipicolinate synthase subunit A N-terminal domain D9C12_10950 PF01262 Alanine dehydrogenase/PNT, C-terminal domain D9C12_10955 PF02441 Flavoprotein D9C12_10960 PF02774 Semialdehyde dehydrogenase, dimerisation domain D9C12_10960 PF01118 Semialdehyde dehydrogenase, NAD binding domain D9C12_10965 PF13840 ACT domain D9C12_10965 PF00696 Amino acid kinase family D9C12_10970 PF00701 Dihydrodipicolinate synthetase family D9C12_10975 PF00753 Metallo-beta-lactamase superfamily D9C12_10975 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain D9C12_10975 PF17770 Ribonuclease J C-terminal domain D9C12_10985 PF14035 YlzJ-like protein D9C12_10990 PF01580 FtsK/SpoIIIE family D9C12_10990 PF09397 Ftsk gamma domain D9C12_10990 PF17854 FtsK alpha domain D9C12_10995 PF00392 Bacterial regulatory proteins, gntR family D9C12_10995 PF07702 UTRA domain D9C12_11000 PF07690 Major Facilitator Superfamily D9C12_11005 PF05193 Peptidase M16 inactive domain D9C12_11010 PF05193 Peptidase M16 inactive domain D9C12_11010 PF00675 Insulinase (Peptidase family M16) D9C12_11020 PF11588 Protein of unknown function (DUF3243) D9C12_11025 PF11868 Protein of unknown function (DUF3388) D9C12_11030 PF13464 Domain of unknown function (DUF4115) D9C12_11035 PF01066 CDP-alcohol phosphatidyltransferase D9C12_11040 PF18146 Damage-inducible protein CinA KH domain D9C12_11040 PF00994 Probable molybdopterin binding domain D9C12_11040 PF02464 Competence-damaged protein D9C12_11045 PF00154 recA bacterial DNA recombination protein D9C12_11050 PF00144 Beta-lactamase D9C12_11055 PF12072 Domain of unknown function (DUF3552) D9C12_11055 PF00013 KH domain D9C12_11055 PF01966 HD domain D9C12_11060 PF13277 YmdB-like protein D9C12_11065 PF04232 Stage V sporulation protein S (SpoVS) D9C12_11070 PF00107 Zinc-binding dehydrogenase D9C12_11070 PF08240 Alcohol dehydrogenase GroES-like domain D9C12_11075 PF00155 Aminotransferase class I and II D9C12_11085 PF00919 Uncharacterized protein family UPF0004 D9C12_11085 PF01938 TRAM domain D9C12_11085 PF04055 Radical SAM superfamily D9C12_11090 PF06133 Control of competence regulator ComK, YlbF/YmcA D9C12_11095 PF10628 Outer spore coat protein E (CotE) D9C12_11100 PF01624 MutS domain I D9C12_11100 PF05192 MutS domain III D9C12_11100 PF05190 MutS family domain IV D9C12_11100 PF05188 MutS domain II D9C12_11100 PF00488 MutS domain V D9C12_11105 PF01119 DNA mismatch repair protein, C-terminal domain D9C12_11105 PF08676 MutL C terminal dimerisation domain D9C12_11120 PF02368 Bacterial Ig-like domain (group 2) D9C12_11180 PF00872 Transposase, Mutator family D9C12_11190 PF14184 Regulatory protein YrvL D9C12_11200 PF00440 Bacterial regulatory proteins, tetR family D9C12_11200 PF13977 BetI-type transcriptional repressor, C-terminal D9C12_11215 PF00082 Subtilase family D9C12_11225 PF05908 Poly-gamma-glutamate hydrolase D9C12_11230 PF02566 OsmC-like protein D9C12_11235 PF00893 Small Multidrug Resistance protein D9C12_11240 PF00893 Small Multidrug Resistance protein D9C12_11250 PF12788 YmaF family D9C12_11260 PF17209 Hfq protein D9C12_11265 PF14157 YmzC-like protein D9C12_11275 PF07972 NrdI Flavodoxin like D9C12_11280 PF00317 Ribonucleotide reductase, all-alpha domain D9C12_11280 PF08343 Ribonucleotide reductase N-terminal D9C12_11280 PF02867 Ribonucleotide reductase, barrel domain D9C12_11285 PF00268 Ribonucleotide reductase, small chain D9C12_11295 PF01520 N-acetylmuramoyl-L-alanine amidase D9C12_11295 PF05036 Sporulation related domain D9C12_11305 PF00004 ATPase family associated with various cellular activities (AAA) D9C12_11305 PF17866 AAA lid domain D9C12_11310 PF16360 GTP-binding GTPase Middle Region D9C12_11310 PF13167 GTP-binding GTPase N-terminal D9C12_11310 PF01926 50S ribosome-binding GTPase D9C12_11315 PF06838 Methionine gamma-lyase D9C12_11320 PF13411 MerR HTH family regulatory protein D9C12_11325 PF03951 Glutamine synthetase, beta-Grasp domain D9C12_11325 PF00120 Glutamine synthetase, catalytic domain D9C12_11335 PF18593 CdiI immunity protein D9C12_11345 PF04740 LXG domain of WXG superfamily D9C12_11345 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH D9C12_11390 PF00872 Transposase, Mutator family D9C12_11400 PF13302 Acetyltransferase (GNAT) domain D9C12_11415 PF13443 Cro/C1-type HTH DNA-binding domain D9C12_11450 PF04616 Glycosyl hydrolases family 43 D9C12_11450 PF17851 Beta xylosidase C-terminal Concanavalin A-like domain D9C12_11455 PF00480 ROK family D9C12_11460 PF01261 Xylose isomerase-like TIM barrel D9C12_11465 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D9C12_11465 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D9C12_11480 PF00872 Transposase, Mutator family D9C12_11485 PF00565 Staphylococcal nuclease homologue D9C12_11490 PF00083 Sugar (and other) transporter D9C12_11495 PF01168 Alanine racemase, N-terminal domain D9C12_11495 PF00842 Alanine racemase, C-terminal domain D9C12_11510 PF00692 dUTPase D9C12_11530 PF00303 Thymidylate synthase D9C12_11540 PF15493 Domain of unknown function, YrpD D9C12_11545 PF14037 YoqO-like protein D9C12_11555 PF02416 mttA/Hcf106 family D9C12_11565 PF08327 Activator of Hsp90 ATPase homolog 1-like protein D9C12_11595 PF13761 Domain of unknown function (DUF4166) D9C12_11600 PF14158 YndJ-like protein D9C12_11610 PF05908 Poly-gamma-glutamate hydrolase D9C12_11615 PF10710 Protein of unknown function (DUF2512) D9C12_11620 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D9C12_11630 PF00717 Peptidase S24-like D9C12_11630 PF01726 LexA DNA binding domain D9C12_11635 PF01476 LysM domain D9C12_11640 PF00239 Resolvase, N terminal domain D9C12_11645 PF05979 Bacterial protein of unknown function (DUF896) D9C12_11650 PF02780 Transketolase, C-terminal domain D9C12_11650 PF02779 Transketolase, pyrimidine binding domain D9C12_11650 PF00456 Transketolase, thiamine diphosphate binding domain D9C12_11655 PF10747 Sporulation inhibitor of replication protein SirA D9C12_11660 PF03672 Uncharacterised protein family (UPF0154) D9C12_11665 PF09388 Spo0E like sporulation regulatory protein D9C12_11670 PF02683 Cytochrome C biogenesis protein transmembrane region D9C12_11675 PF00072 Response regulator receiver domain D9C12_11680 PF07301 Protein of unknown function (DUF1453) D9C12_11690 PF11084 Protein of unknown function (DUF2621) D9C12_11700 PF08179 Small acid-soluble spore protein P family D9C12_11710 PF00694 Aconitase C-terminal domain D9C12_11710 PF00330 Aconitase family (aconitate hydratase) D9C12_11715 PF00578 AhpC/TSA family D9C12_11720 PF13040 Fur-regulated basic protein B D9C12_11725 PF08177 Small acid-soluble spore protein N family D9C12_11735 PF03061 Thioesterase superfamily D9C12_11745 PF01521 Iron-sulphur cluster biosynthesis D9C12_11750 PF02660 Glycerol-3-phosphate acyltransferase D9C12_11755 PF13380 CoA binding domain D9C12_11760 PF00204 DNA gyrase B D9C12_11760 PF00986 DNA gyrase B subunit, carboxyl terminus D9C12_11760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D9C12_11760 PF01751 Toprim domain D9C12_11765 PF03989 DNA gyrase C-terminal domain, beta-propeller D9C12_11765 PF00521 DNA gyrase/topoisomerase IV, subunit A D9C12_11775 PF01235 Sodium:alanine symporter family D9C12_11780 PF00942 Cellulose binding domain D9C12_11780 PF00150 Cellulase (glycosyl hydrolase family 5) D9C12_11785 PF17452 Uncharacterized YnfE-like D9C12_11800 PF04138 GtrA-like protein D9C12_11805 PF00483 Nucleotidyl transferase D9C12_11810 PF09335 SNARE associated Golgi protein D9C12_11820 PF01039 Carboxyl transferase domain D9C12_11825 PF00378 Enoyl-CoA hydratase/isomerase D9C12_11830 PF00682 HMGL-like D9C12_11835 PF00364 Biotin-requiring enzyme D9C12_11840 PF02785 Biotin carboxylase C-terminal domain D9C12_11840 PF00289 Biotin carboxylase, N-terminal domain D9C12_11840 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D9C12_11845 PF00501 AMP-binding enzyme D9C12_11845 PF13193 AMP-binding enzyme C-terminal domain D9C12_11850 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D9C12_11850 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D9C12_11850 PF02770 Acyl-CoA dehydrogenase, middle domain D9C12_11855 PF17329 Family of unknown function (DUF5367) D9C12_11860 PF02638 Glycosyl hydrolase-like 10 D9C12_11865 PF07098 Protein of unknown function (DUF1360) D9C12_11875 PF00501 AMP-binding enzyme D9C12_11875 PF13193 AMP-binding enzyme C-terminal domain D9C12_11875 PF00668 Condensation domain D9C12_11875 PF00550 Phosphopantetheine attachment site D9C12_11880 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family D9C12_11885 PF01263 Aldose 1-epimerase D9C12_11890 PF01554 MatE D9C12_11895 PF16800 IseA DL-endopeptidase inhibitor D9C12_11905 PF00589 Phage integrase family D9C12_11910 PF12728 Helix-turn-helix domain D9C12_11920 PF03466 LysR substrate binding domain D9C12_11920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D9C12_11925 PF08240 Alcohol dehydrogenase GroES-like domain D9C12_11925 PF00107 Zinc-binding dehydrogenase D9C12_11930 PF07992 Pyridine nucleotide-disulphide oxidoreductase D9C12_11930 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster D9C12_11935 PF01645 Conserved region in glutamate synthase D9C12_11935 PF00310 Glutamine amidotransferases class-II D9C12_11935 PF04898 Glutamate synthase central domain D9C12_11935 PF01493 GXGXG motif D9C12_11940 PF03466 LysR substrate binding domain D9C12_11940 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D9C12_11965 PF02334 Replication terminator protein D9C12_11970 PF00106 short chain dehydrogenase D9C12_11975 PF06103 Bacterial protein of unknown function (DUF948) D9C12_11985 PF13302 Acetyltransferase (GNAT) domain D9C12_12000 PF00005 ABC transporter D9C12_12010 PF07690 Major Facilitator Superfamily D9C12_12020 PF04239 Protein of unknown function (DUF421) D9C12_12025 PF13396 Phospholipase_D-nuclease N-terminal D9C12_12025 PF13091 PLD-like domain D9C12_12035 PF04239 Protein of unknown function (DUF421) D9C12_12045 PF03862 SpoVAC/SpoVAEB sporulation membrane protein D9C12_12050 PF07451 Stage V sporulation protein AD (SpoVAD) D9C12_12055 PF03862 SpoVAC/SpoVAEB sporulation membrane protein D9C12_12070 PF05067 Manganese containing catalase D9C12_12080 PF03323 Bacillus/Clostridium GerA spore germination protein D9C12_12085 PF01520 N-acetylmuramoyl-L-alanine amidase D9C12_12085 PF05036 Sporulation related domain D9C12_12095 PF01526 Tn3 transposase DDE domain D9C12_12095 PF13700 Domain of unknown function (DUF4158) D9C12_12100 PF13700 Domain of unknown function (DUF4158) D9C12_12100 PF01526 Tn3 transposase DDE domain D9C12_12105 PF05227 CHASE3 domain D9C12_12105 PF00672 HAMP domain D9C12_12105 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D9C12_12110 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal D9C12_12110 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal D9C12_12115 PF03330 Lytic transglycolase D9C12_12120 PF06912 Protein of unknown function (DUF1275) D9C12_12140 PF00190 Cupin D9C12_12170 PF04294 VanW like protein D9C12_12175 PF11188 Protein of unknown function (DUF2975) D9C12_12180 PF13443 Cro/C1-type HTH DNA-binding domain D9C12_12185 PF05675 Protein of unknown function (DUF817) D9C12_12190 PF03466 LysR substrate binding domain D9C12_12190 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D9C12_12195 PF00892 EamA-like transporter family D9C12_12205 PF01965 DJ-1/PfpI family D9C12_12220 PF01609 Transposase DDE domain D9C12_12225 PF11518 Protein of unknown function (DUF3221) D9C12_12240 PF00391 PEP-utilising enzyme, mobile domain D9C12_12240 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain D9C12_12245 PF00457 Glycosyl hydrolases family 11 D9C12_12255 PF05154 TM2 domain D9C12_12260 PF01381 Helix-turn-helix D9C12_12295 PF00665 Integrase core domain D9C12_12300 PF01695 IstB-like ATP binding protein D9C12_12310 PF00144 Beta-lactamase D9C12_12320 PF17094 Uncharacterised protein family (UPF0715) D9C12_12340 PF13443 Cro/C1-type HTH DNA-binding domain D9C12_12350 PF17094 Uncharacterised protein family (UPF0715) D9C12_12375 PF14037 YoqO-like protein D9C12_12385 PF18801 response regulator aspartate phosphatase H, N terminal D9C12_12390 PF13302 Acetyltransferase (GNAT) domain D9C12_12400 PF00899 ThiF family D9C12_12405 PF01209 ubiE/COQ5 methyltransferase family D9C12_12410 PF07690 Major Facilitator Superfamily D9C12_12415 PF00872 Transposase, Mutator family D9C12_12445 PF13302 Acetyltransferase (GNAT) domain D9C12_12465 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH D9C12_12465 PF04740 LXG domain of WXG superfamily D9C12_12470 PF09346 SMI1 / KNR4 family (SUKH-1) D9C12_12475 PF01593 Flavin containing amine oxidoreductase D9C12_12480 PF01588 Putative tRNA binding domain D9C12_12485 PF12833 Helix-turn-helix domain D9C12_12485 PF07883 Cupin domain D9C12_12490 PF00583 Acetyltransferase (GNAT) family D9C12_12495 PF00440 Bacterial regulatory proteins, tetR family D9C12_12495 PF13305 Tetracyclin repressor-like, C-terminal domain D9C12_12500 PF00753 Metallo-beta-lactamase superfamily D9C12_12505 PF06445 GyrI-like small molecule binding domain D9C12_12510 PF13280 WYL domain D9C12_12510 PF08279 HTH domain D9C12_12520 PF01022 Bacterial regulatory protein, arsR family D9C12_12540 PF04238 Protein of unknown function (DUF420) D9C12_12545 PF18846 Bacterial archaeo-eukaryotic release factor family 5 D9C12_12555 PF17676 LD-carboxypeptidase C-terminal domain D9C12_12555 PF02016 LD-carboxypeptidase N-terminal domain D9C12_12560 PF00487 Fatty acid desaturase D9C12_12565 PF07730 Histidine kinase D9C12_12570 PF00072 Response regulator receiver domain D9C12_12570 PF00196 Bacterial regulatory proteins, luxR family D9C12_12575 PF06725 3D domain D9C12_12575 PF01476 LysM domain D9C12_12580 PF00570 HRDC domain D9C12_12580 PF16124 RecQ zinc-binding D9C12_12580 PF00270 DEAD/DEAH box helicase D9C12_12580 PF00271 Helicase conserved C-terminal domain D9C12_12580 PF09382 RQC domain D9C12_12595 PF02525 Flavodoxin-like fold D9C12_12600 PF01258 Prokaryotic dksA/traR C4-type zinc finger D9C12_12615 PF00011 Hsp20/alpha crystallin family D9C12_12630 PF08000 Bacterial PH domain D9C12_12640 PF00171 Aldehyde dehydrogenase family D9C12_12645 PF13243 Squalene-hopene cyclase C-terminal domain D9C12_12645 PF13249 Squalene-hopene cyclase N-terminal domain D9C12_12650 PF02777 Iron/manganese superoxide dismutases, C-terminal domain D9C12_12650 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain D9C12_12655 PF00209 Sodium:neurotransmitter symporter family D9C12_12660 PF01758 Sodium Bile acid symporter family D9C12_12665 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D9C12_12665 PF02817 e3 binding domain D9C12_12665 PF00364 Biotin-requiring enzyme D9C12_12670 PF02779 Transketolase, pyrimidine binding domain D9C12_12670 PF00676 Dehydrogenase E1 component D9C12_12670 PF16870 2-oxoglutarate dehydrogenase C-terminal D9C12_12675 PF00092 von Willebrand factor type A domain D9C12_12680 PF07728 AAA domain (dynein-related subfamily) D9C12_12685 PF00080 Copper/zinc superoxide dismutase (SODC) D9C12_12685 PF13627 Prokaryotic lipoprotein-attachment site D9C12_12690 PF01476 LysM domain D9C12_12690 PF00877 NlpC/P60 family D9C12_12695 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase D9C12_12700 PF10372 Bacterial membrane-spanning protein N-terminus D9C12_12700 PF02457 DisA bacterial checkpoint controller nucleotide-binding D9C12_12705 PF01554 MatE D9C12_12710 PF01740 STAS domain D9C12_12720 PF02585 GlcNAc-PI de-N-acetylase D9C12_12725 PF08830 Protein of unknown function (DUF1806) D9C12_12735 PF00892 EamA-like transporter family D9C12_12750 PF02447 GntP family permease D9C12_12755 PF14552 Tautomerase enzyme D9C12_12760 PF01638 HxlR-like helix-turn-helix D9C12_12765 PF00881 Nitroreductase family D9C12_12770 PF01738 Dienelactone hydrolase family D9C12_12775 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D9C12_12780 PF11755 Protein of unknown function (DUF3311) D9C12_12785 PF00474 Sodium:solute symporter family D9C12_12790 PF01471 Putative peptidoglycan binding domain D9C12_12790 PF03572 Peptidase family S41 D9C12_12790 PF17820 PDZ domain D9C12_12795 PF08241 Methyltransferase domain D9C12_12805 PF02557 D-alanyl-D-alanine carboxypeptidase D9C12_12810 PF01048 Phosphorylase superfamily D9C12_12820 PF14191 YodL-like D9C12_12825 PF01569 PAP2 superfamily D9C12_12830 PF14162 YozD-like protein D9C12_12850 PF06855 YozE SAM-like fold D9C12_12855 PF14122 YokU-like protein, putative antitoxin D9C12_12860 PF12544 Lysine-2,3-aminomutase D9C12_12865 PF00583 Acetyltransferase (GNAT) family D9C12_12870 PF01546 Peptidase family M20/M25/M40 D9C12_12870 PF07687 Peptidase dimerisation domain D9C12_12880 PF01144 Coenzyme A transferase D9C12_12885 PF00202 Aminotransferase class-III D9C12_12900 PF00583 Acetyltransferase (GNAT) family D9C12_12905 PF00535 Glycosyl transferase family 2 D9C12_12920 PF12996 DUF based on E. rectale Gene description (DUF3880) D9C12_12925 PF02333 Phytase D9C12_12930 PF02719 Polysaccharide biosynthesis protein D9C12_12935 PF01641 SelR domain D9C12_12940 PF01625 Peptide methionine sulfoxide reductase D9C12_12945 PF01047 MarR family D9C12_12950 PF01554 MatE D9C12_12955 PF17431 Uncharacterized YmpT-like D9C12_12960 PF09911 Uncharacterized protein conserved in bacteria (DUF2140) D9C12_12965 PF13472 GDSL-like Lipase/Acylhydrolase family D9C12_12970 PF02630 SCO1/SenC D9C12_12975 PF10751 Protein of unknown function (DUF2535) D9C12_12980 PF00291 Pyridoxal-phosphate dependent enzyme D9C12_12980 PF00585 C-terminal regulatory domain of Threonine dehydratase D9C12_12985 PF08461 Ribonuclease R winged-helix domain D9C12_12985 PF00158 Sigma-54 interaction domain D9C12_12990 PF03006 Haemolysin-III related D9C12_13000 PF00186 Dihydrofolate reductase D9C12_13005 PF04608 Phosphatidylglycerophosphatase A D9C12_13010 PF14005 YpjP-like protein D9C12_13015 PF04445 Putative SAM-dependent methyltransferase D9C12_13020 PF06491 Disulphide isomerase D9C12_13025 PF00920 Dehydratase family D9C12_13030 PF13769 Virulence factor D9C12_13030 PF08712 Scaffold protein Nfu/NifU N terminal D9C12_13035 PF01966 HD domain D9C12_13040 PF00255 Glutathione peroxidase D9C12_13045 PF04204 Homoserine O-succinyltransferase D9C12_13050 PF00534 Glycosyl transferases group 1 D9C12_13050 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase D9C12_13060 PF00313 'Cold-shock' DNA-binding domain D9C12_13070 PF10819 Protein of unknown function (DUF2564) D9C12_13075 PF10782 Zinc-finger D9C12_13080 PF13456 Reverse transcriptase-like D9C12_13085 PF02592 Putative vitamin uptake transporter D9C12_13090 PF13456 Reverse transcriptase-like D9C12_13100 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain D9C12_13100 PF01367 5'-3' exonuclease, C-terminal SAM fold D9C12_13110 PF10752 Protein of unknown function (DUF2533) D9C12_13115 PF00350 Dynamin family D9C12_13125 PF04140 Isoprenylcysteine carboxyl methyltransferase (ICMT) family D9C12_13135 PF00860 Permease family D9C12_13140 PF00156 Phosphoribosyl transferase domain D9C12_13145 PF02074 Carboxypeptidase Taq (M32) metallopeptidase D9C12_13150 PF03812 2-keto-3-deoxygluconate permease D9C12_13155 PF01081 KDPG and KHG aldolase D9C12_13160 PF00294 pfkB family carbohydrate kinase D9C12_13165 PF00356 Bacterial regulatory proteins, lacI family D9C12_13170 PF04962 KduI/IolB family D9C12_13180 PF13307 Helicase C-terminal domain D9C12_13190 PF14139 YpzG-like protein D9C12_13195 PF01170 Putative RNA methylase family UPF0020 D9C12_13195 PF02926 THUMP domain D9C12_13205 PF05103 DivIVA protein D9C12_13210 PF06908 YspA SLOG family D9C12_13215 PF11122 Inner spore coat protein D D9C12_13225 PF13482 RNase_H superfamily D9C12_13230 PF09369 Domain of unknown function (DUF1998) D9C12_13230 PF00270 DEAD/DEAH box helicase D9C12_13230 PF00271 Helicase conserved C-terminal domain D9C12_13235 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 D9C12_13245 PF14179 YppG-like protein D9C12_13250 PF14178 YppF-like protein D9C12_13255 PF08807 Bacterial domain of unknown function (DUF1798) D9C12_13260 PF17522 Family of unknown function (DUF5446) D9C12_13270 PF10720 Protein of unknown function (DUF2515) D9C12_13275 PF03838 Recombination protein U D9C12_13280 PF00912 Transglycosylase D9C12_13280 PF00905 Penicillin binding protein transpeptidase domain D9C12_13290 PF00633 Helix-hairpin-helix motif D9C12_13290 PF00730 HhH-GPD superfamily base excision DNA repair protein D9C12_13290 PF10576 Iron-sulfur binding domain of endonuclease III D9C12_13295 PF07261 Replication initiation and membrane attachment D9C12_13300 PF00152 tRNA synthetases class II (D, K and N) D9C12_13300 PF01336 OB-fold nucleic acid binding domain D9C12_13305 PF00155 Aminotransferase class I and II D9C12_13310 PF03413 Peptidase propeptide and YPEB domain D9C12_13310 PF17881 Domain of unknown function (DUF5590) D9C12_13315 PF14084 Protein of unknown function (DUF4264) D9C12_13320 PF00929 Exonuclease D9C12_13320 PF04851 Type III restriction enzyme, res subunit D9C12_13320 PF13307 Helicase C-terminal domain D9C12_13325 PF02261 Aspartate decarboxylase D9C12_13330 PF02569 Pantoate-beta-alanine ligase D9C12_13335 PF02548 Ketopantoate hydroxymethyltransferase D9C12_13340 PF03099 Biotin/lipoate A/B protein ligase family D9C12_13340 PF08279 HTH domain D9C12_13340 PF02237 Biotin protein ligase C terminal domain D9C12_13345 PF01743 Poly A polymerase head domain D9C12_13345 PF13735 tRNA nucleotidyltransferase domain 2 putative D9C12_13345 PF12627 Probable RNA and SrmB- binding site of polymerase A D9C12_13350 PF13439 Glycosyltransferase Family 4 D9C12_13350 PF00534 Glycosyl transferases group 1 D9C12_13355 PF02585 GlcNAc-PI de-N-acetylase D9C12_13360 PF02142 MGS-like domain D9C12_13365 PF01113 Dihydrodipicolinate reductase, N-terminus D9C12_13365 PF05173 Dihydrodipicolinate reductase, C-terminus D9C12_13370 PF03819 MazG nucleotide pyrophosphohydrolase domain D9C12_13375 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 D9C12_13375 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) D9C12_13380 PF09577 Sporulation protein YpjB (SpoYpjB) D9C12_13385 PF07187 Protein of unknown function (DUF1405) D9C12_13390 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D9C12_13390 PF00032 Cytochrome b(C-terminal)/b6/petD D9C12_13395 PF00033 Cytochrome b/b6/petB D9C12_13400 PF00355 Rieske [2Fe-2S] domain D9C12_13405 PF10673 Protein of unknown function (DUF2487) D9C12_13410 PF08858 IDEAL domain D9C12_13410 PF08864 UPF0302 domain D9C12_13420 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D9C12_13425 PF02153 Prephenate dehydrogenase D9C12_13425 PF01842 ACT domain D9C12_13430 PF00155 Aminotransferase class I and II D9C12_13435 PF00290 Tryptophan synthase alpha chain D9C12_13440 PF00291 Pyridoxal-phosphate dependent enzyme D9C12_13445 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase D9C12_13450 PF00218 Indole-3-glycerol phosphate synthase D9C12_13455 PF00591 Glycosyl transferase family, a/b domain D9C12_13455 PF02885 Glycosyl transferase family, helical bundle domain D9C12_13460 PF00425 chorismate binding enzyme D9C12_13460 PF04715 Anthranilate synthase component I, N terminal region D9C12_13465 PF07736 Chorismate mutase type I D9C12_13470 PF01761 3-dehydroquinate synthase D9C12_13475 PF01264 Chorismate synthase D9C12_13480 PF01739 CheR methyltransferase, SAM binding domain D9C12_13480 PF03705 CheR methyltransferase, all-alpha domain D9C12_13485 PF00334 Nucleoside diphosphate kinase D9C12_13490 PF00348 Polyprenyl synthetase D9C12_13495 PF01209 ubiE/COQ5 methyltransferase family D9C12_13500 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 D9C12_13505 PF02081 Tryptophan RNA-binding attenuator protein D9C12_13510 PF01227 GTP cyclohydrolase I D9C12_13525 PF00216 Bacterial DNA-binding protein D9C12_13530 PF09547 Stage IV sporulation protein A (spore_IV_A) D9C12_13540 PF10966 Protein of unknown function (DUF2768) D9C12_13545 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus D9C12_13545 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus D9C12_13550 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal D9C12_13550 PF01926 50S ribosome-binding GTPase D9C12_13560 PF14045 YIEGIA protein D9C12_13570 PF14140 YpzI-like protein D9C12_13580 PF01070 FMN-dependent dehydrogenase D9C12_13585 PF00575 S1 RNA binding domain D9C12_13590 PF02224 Cytidylate kinase D9C12_13595 PF17313 Family of unknown function (DUF5359) D9C12_13600 PF07238 PilZ domain D9C12_13600 PF12945 Flagellar protein YcgR D9C12_13605 PF14620 YpeB sporulation D9C12_13605 PF03413 Peptidase propeptide and YPEB domain D9C12_13610 PF07486 Cell Wall Hydrolase D9C12_13610 PF01471 Putative peptidoglycan binding domain D9C12_13615 PF13367 PrsW family intramembrane metalloprotease D9C12_13625 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain D9C12_13625 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase D9C12_13630 PF05389 Negative regulator of genetic competence (MecA) D9C12_13635 PF00149 Calcineurin-like phosphoesterase D9C12_13640 PF10864 Protein of unknown function (DUF2663) D9C12_13645 PF01476 LysM domain D9C12_13650 PF02517 CPBP intramembrane metalloprotease D9C12_13660 PF14493 Helix-turn-helix domain D9C12_13670 PF12822 ECF transporter, substrate-specific component D9C12_13675 PF01842 ACT domain D9C12_13675 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D9C12_13675 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D9C12_13680 PF01487 Type I 3-dehydroquinase D9C12_13690 PF08281 Sigma-70, region 4 D9C12_13690 PF04542 Sigma-70 region 2 D9C12_13695 PF00512 His Kinase A (phospho-acceptor) domain D9C12_13695 PF00989 PAS fold D9C12_13695 PF18698 Histidine kinase sensor domain D9C12_13695 PF00672 HAMP domain D9C12_13695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D9C12_13700 PF00486 Transcriptional regulatory protein, C terminal D9C12_13700 PF00072 Response regulator receiver domain D9C12_13705 PF01578 Cytochrome C assembly protein D9C12_13710 PF05140 ResB-like family D9C12_13715 PF00578 AhpC/TSA family D9C12_13720 PF01479 S4 domain D9C12_13720 PF00849 RNA pseudouridylate synthase D9C12_13725 PF07670 Nucleoside recognition D9C12_13730 PF07670 Nucleoside recognition D9C12_13735 PF07943 Penicillin-binding protein 5, C-terminal domain D9C12_13735 PF00768 D-alanyl-D-alanine carboxypeptidase D9C12_13740 PF13047 Protein of unknown function (DUF3907) D9C12_13745 PF04079 Segregation and condensation complex subunit ScpB D9C12_13750 PF02616 Segregation and condensation protein ScpA D9C12_13755 PF03745 Domain of unknown function (DUF309) D9C12_13760 PF00583 Acetyltransferase (GNAT) family D9C12_13765 PF00885 6,7-dimethyl-8-ribityllumazine synthase D9C12_13770 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase D9C12_13770 PF00925 GTP cyclohydrolase II D9C12_13775 PF00677 Lumazine binding domain D9C12_13780 PF01872 RibD C-terminal domain D9C12_13780 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D9C12_13790 PF10502 Signal peptidase, peptidase S26 D9C12_13800 PF09855 Nucleic-acid-binding protein containing Zn-ribbon domain (DUF2082) D9C12_13805 PF10676 Spore germination protein gerPA/gerPF D9C12_13850 PF00872 Transposase, Mutator family D9C12_13860 PF02810 SEC-C motif D9C12_13870 PF18801 response regulator aspartate phosphatase H, N terminal D9C12_13880 PF00872 Transposase, Mutator family D9C12_13935 PF01609 Transposase DDE domain D9C12_13940 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD D9C12_13955 PF06207 Protein of unknown function (DUF1002) D9C12_13960 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain D9C12_13960 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain D9C12_13965 PF03323 Bacillus/Clostridium GerA spore germination protein D9C12_13970 PF14097 Stage V sporulation protein AE1 D9C12_13975 PF03862 SpoVAC/SpoVAEB sporulation membrane protein D9C12_13980 PF07451 Stage V sporulation protein AD (SpoVAD) D9C12_13985 PF03862 SpoVAC/SpoVAEB sporulation membrane protein D9C12_13990 PF13782 Stage V sporulation protein AB D9C12_13995 PF12164 Stage V sporulation protein AA D9C12_14000 PF04542 Sigma-70 region 2 D9C12_14000 PF04545 Sigma-70, region 4 D9C12_14000 PF04539 Sigma-70 region 3 D9C12_14005 PF13581 Histidine kinase-like ATPase domain D9C12_14010 PF01740 STAS domain D9C12_14015 PF07943 Penicillin-binding protein 5, C-terminal domain D9C12_14015 PF00768 D-alanyl-D-alanine carboxypeptidase D9C12_14020 PF01048 Phosphorylase superfamily D9C12_14025 PF01676 Metalloenzyme superfamily D9C12_14030 PF00589 Phage integrase family D9C12_14030 PF02899 Phage integrase, N-terminal SAM-like domain D9C12_14035 PF14004 Protein of unknown function (DUF4227) D9C12_14040 PF01475 Ferric uptake regulator family D9C12_14045 PF01944 Stage II sporulation protein M D9C12_14055 PF03949 Malic enzyme, NAD binding domain D9C12_14055 PF00390 Malic enzyme, N-terminal domain D9C12_14055 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D9C12_14060 PF03553 Na+/H+ antiporter family D9C12_14065 PF10415 Fumarase C C-terminus D9C12_14065 PF00206 Lyase D9C12_14070 PF00710 Asparaginase, N-terminal D9C12_14070 PF17763 Glutaminase/Asparaginase C-terminal domain D9C12_14075 PF01381 Helix-turn-helix D9C12_14085 PF00293 NUDIX domain D9C12_14090 PF13072 Mother cell inhibitor of FtsZ D9C12_14095 PF00248 Aldo/keto reductase family D9C12_14100 PF13025 Protein of unknown function (DUF3886) D9C12_14105 PF12146 Serine aminopeptidase, S33 D9C12_14110 PF10827 Protein of unknown function (DUF2552) D9C12_14115 PF01521 Iron-sulphur cluster biosynthesis D9C12_14120 PF04229 GrpB protein D9C12_14120 PF13673 Acetyltransferase (GNAT) domain D9C12_14125 PF03992 Antibiotic biosynthesis monooxygenase D9C12_14130 PF00583 Acetyltransferase (GNAT) family D9C12_14135 PF08863 YolD-like protein D9C12_14140 PF11799 impB/mucB/samB family C-terminal domain D9C12_14140 PF00817 impB/mucB/samB family D9C12_14145 PF14164 YqzH-like protein D9C12_14150 PF07690 Major Facilitator Superfamily D9C12_14160 PF00485 Phosphoribulokinase / Uridine kinase family D9C12_14165 PF00291 Pyridoxal-phosphate dependent enzyme D9C12_14170 PF00106 short chain dehydrogenase D9C12_14175 PF00753 Metallo-beta-lactamase superfamily D9C12_14180 PF14748 Pyrroline-5-carboxylate reductase dimerisation D9C12_14180 PF03807 NADP oxidoreductase coenzyme F420-dependent D9C12_14195 PF01546 Peptidase family M20/M25/M40 D9C12_14200 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D9C12_14205 PF12146 Serine aminopeptidase, S33 D9C12_14210 PF00471 Ribosomal protein L33 D9C12_14215 PF12706 Beta-lactamase superfamily domain D9C12_14220 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain D9C12_14220 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain D9C12_14225 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain D9C12_14225 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D9C12_14240 PF02096 60Kd inner membrane protein D9C12_14245 PF09844 Uncharacterized conserved protein (COG2071) D9C12_14250 PF07687 Peptidase dimerisation domain D9C12_14250 PF01546 Peptidase family M20/M25/M40 D9C12_14255 PF01039 Carboxyl transferase domain D9C12_14265 PF03734 L,D-transpeptidase catalytic domain D9C12_14270 PF11728 Putative aromatic acid exporter C-terminal domain D9C12_14270 PF06081 Aromatic acid exporter family member 1 D9C12_14275 PF00005 ABC transporter D9C12_14280 PF00528 Binding-protein-dependent transport system inner membrane component D9C12_14285 PF00497 Bacterial extracellular solute-binding proteins, family 3 D9C12_14290 PF06491 Disulphide isomerase D9C12_14295 PF00781 Diacylglycerol kinase catalytic domain D9C12_14305 PF06445 GyrI-like small molecule binding domain D9C12_14305 PF13411 MerR HTH family regulatory protein D9C12_14310 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) D9C12_14310 PF02817 e3 binding domain D9C12_14310 PF00364 Biotin-requiring enzyme D9C12_14315 PF02779 Transketolase, pyrimidine binding domain D9C12_14315 PF02780 Transketolase, C-terminal domain D9C12_14320 PF00676 Dehydrogenase E1 component D9C12_14325 PF07992 Pyridine nucleotide-disulphide oxidoreductase D9C12_14325 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain D9C12_14330 PF00871 Acetokinase family D9C12_14335 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain D9C12_14335 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase D9C12_14340 PF01515 Phosphate acetyl/butaryl transferase D9C12_14345 PF00989 PAS fold D9C12_14345 PF00158 Sigma-54 interaction domain D9C12_14345 PF02954 Bacterial regulatory protein, Fis family D9C12_14350 PF11118 Protein of unknown function (DUF2627) D9C12_14360 PF03972 MmgE/PrpD family D9C12_14365 PF00285 Citrate synthase, C-terminal domain D9C12_14370 PF02770 Acyl-CoA dehydrogenase, middle domain D9C12_14370 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D9C12_14370 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D9C12_14375 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D9C12_14375 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D9C12_14380 PF02803 Thiolase, C-terminal domain D9C12_14380 PF00108 Thiolase, N-terminal domain D9C12_14385 PF03009 Glycerophosphoryl diester phosphodiesterase family D9C12_14390 PF01520 N-acetylmuramoyl-L-alanine amidase D9C12_14405 PF00724 NADH:flavin oxidoreductase / NADH oxidase family D9C12_14410 PF08769 Sporulation initiation factor Spo0A C terminal D9C12_14410 PF00072 Response regulator receiver domain D9C12_14420 PF05580 SpoIVB peptidase S55 D9C12_14420 PF17820 PDZ domain D9C12_14425 PF13476 AAA domain D9C12_14430 PF02863 Arginine repressor, C-terminal domain D9C12_14430 PF01316 Arginine repressor, DNA binding domain D9C12_14435 PF01479 S4 domain D9C12_14435 PF01728 FtsJ-like methyltransferase D9C12_14440 PF13292 1-deoxy-D-xylulose-5-phosphate synthase D9C12_14440 PF02780 Transketolase, C-terminal domain D9C12_14440 PF02779 Transketolase, pyrimidine binding domain D9C12_14445 PF00348 Polyprenyl synthetase D9C12_14450 PF02609 Exonuclease VII small subunit D9C12_14455 PF13742 OB-fold nucleic acid binding domain D9C12_14455 PF02601 Exonuclease VII, large subunit D9C12_14460 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain D9C12_14460 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain D9C12_14465 PF01029 NusB family D9C12_14470 PF03780 Asp23 family, cell envelope-related function D9C12_14475 PF02785 Biotin carboxylase C-terminal domain D9C12_14475 PF00289 Biotin carboxylase, N-terminal domain D9C12_14475 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain D9C12_14480 PF00364 Biotin-requiring enzyme D9C12_14495 PF12685 SpoIIIAH-like protein D9C12_14505 PF09581 Stage III sporulation protein AF (Spore_III_AF) D9C12_14510 PF09546 Stage III sporulation protein AE (spore_III_AE) D9C12_14515 PF06686 Stage III sporulation protein AC/AD protein family D9C12_14520 PF06686 Stage III sporulation protein AC/AD protein family D9C12_14525 PF09548 Stage III sporulation protein AB (spore_III_AB) D9C12_14535 PF10942 Protein of unknown function (DUF2619) D9C12_14540 PF01132 Elongation factor P (EF-P) OB domain D9C12_14540 PF08207 Elongation factor P (EF-P) KOW-like domain D9C12_14540 PF09285 Elongation factor P, C-terminal D9C12_14545 PF01321 Creatinase/Prolidase N-terminal domain D9C12_14545 PF00557 Metallopeptidase family M24 D9C12_14550 PF01220 Dehydroquinase class II D9C12_14555 PF11085 Conserved membrane protein YqhR D9C12_14560 PF07136 Protein of unknown function (DUF1385) D9C12_14570 PF01734 Patatin-like phospholipase D9C12_14575 PF02742 Iron dependent repressor, metal binding and dimerisation domain D9C12_14575 PF01325 Iron dependent repressor, N-terminal DNA binding domain D9C12_14580 PF03099 Biotin/lipoate A/B protein ligase family D9C12_14585 PF00581 Rhodanese-like domain D9C12_14590 PF02347 Glycine cleavage system P-protein D9C12_14595 PF02347 Glycine cleavage system P-protein D9C12_14600 PF01571 Aminomethyltransferase folate-binding domain D9C12_14600 PF08669 Glycine cleavage T-protein C-terminal barrel domain D9C12_14605 PF00271 Helicase conserved C-terminal domain D9C12_14605 PF00176 SNF2 family N-terminal domain D9C12_14610 PF11079 Bacterial protein YqhG of unknown function D9C12_14615 PF08671 Anti-repressor SinI D9C12_14620 PF08671 Anti-repressor SinI D9C12_14620 PF01381 Helix-turn-helix D9C12_14625 PF12389 Camelysin metallo-endopeptidase D9C12_14640 PF13028 Protein of unknown function (DUF3889) D9C12_14645 PF14038 YqzE-like protein D9C12_14650 PF14173 ComG operon protein 7 D9C12_14655 PF15980 Putative Competence protein ComGF D9C12_14665 PF07963 Prokaryotic N-terminal methylation motif D9C12_14670 PF07963 Prokaryotic N-terminal methylation motif D9C12_14675 PF00482 Type II secretion system (T2SS), protein F D9C12_14680 PF00437 Type II/IV secretion system protein D9C12_14685 PF00571 CBS domain D9C12_14690 PF01544 CorA-like Mg2+ transporter protein D9C12_14695 PF00571 CBS domain D9C12_14695 PF01595 Cyclin M transmembrane N-terminal domain D9C12_14695 PF03471 Transporter associated domain D9C12_14700 PF01740 STAS domain D9C12_14700 PF14361 RsbT co-antagonist protein rsbRD N-terminal domain D9C12_14710 PF03960 ArsC family D9C12_14715 PF11117 Protein of unknown function (DUF2626) D9C12_14725 PF00753 Metallo-beta-lactamase superfamily D9C12_14730 PF10958 Protein of unknown function (DUF2759) D9C12_14735 PF01910 Thiamine-binding protein D9C12_14745 PF00246 Zinc carboxypeptidase D9C12_14750 PF00884 Sulfatase D9C12_14755 PF00480 ROK family D9C12_14760 PF06014 Bacterial protein of unknown function (DUF910) D9C12_14765 PF01694 Rhomboid family D9C12_14775 PF01812 5-formyltetrahydrofolate cyclo-ligase family D9C12_14780 PF00471 Ribosomal protein L33 D9C12_14785 PF00534 Glycosyl transferases group 1 D9C12_14785 PF13439 Glycosyltransferase Family 4 D9C12_14805 PF00005 ABC transporter D9C12_14810 PF00005 ABC transporter D9C12_14815 PF00528 Binding-protein-dependent transport system inner membrane component D9C12_14820 PF00528 Binding-protein-dependent transport system inner membrane component D9C12_14825 PF12849 PBP superfamily domain D9C12_14835 PF07690 Major Facilitator Superfamily D9C12_14840 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain D9C12_14840 PF02777 Iron/manganese superoxide dismutases, C-terminal domain D9C12_14845 PF04306 Protein of unknown function (DUF456) D9C12_14850 PF06691 Protein of unknown function (DUF1189) D9C12_14860 PF04551 GcpE protein D9C12_14875 PF01475 Ferric uptake regulator family D9C12_14880 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 D9C12_14880 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) D9C12_14885 PF11116 Protein of unknown function (DUF2624) D9C12_14890 PF01261 Xylose isomerase-like TIM barrel D9C12_14895 PF00271 Helicase conserved C-terminal domain D9C12_14895 PF00270 DEAD/DEAH box helicase D9C12_14900 PF14181 YqfQ-like protein D9C12_14905 PF02401 LytB protein D9C12_14910 PF01784 NIF3 (NGG1p interacting factor 3) D9C12_14915 PF04816 tRNA (adenine(22)-N(1))-methyltransferase D9C12_14920 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D9C12_14930 PF04539 Sigma-70 region 3 D9C12_14930 PF04545 Sigma-70, region 4 D9C12_14930 PF00140 Sigma-70 factor, region 1.2 D9C12_14930 PF03979 Sigma-70 factor, region 1.1 D9C12_14930 PF04542 Sigma-70 region 2 D9C12_14935 PF10410 DnaB-helicase binding domain of primase D9C12_14935 PF08275 DNA primase catalytic core, N-terminal domain D9C12_14935 PF01807 CHC2 zinc finger D9C12_14940 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 D9C12_14945 PF03618 Kinase/pyrophosphorylase D9C12_14950 PF08279 HTH domain D9C12_14950 PF00571 CBS domain D9C12_14955 PF02092 Glycyl-tRNA synthetase beta subunit D9C12_14960 PF02091 Glycyl-tRNA synthetase alpha subunit D9C12_14965 PF02565 Recombination protein O C terminal D9C12_14965 PF11967 Recombination protein O N terminal D9C12_14970 PF14006 YqzL-like protein D9C12_14975 PF01926 50S ribosome-binding GTPase D9C12_14975 PF07650 KH domain D9C12_14980 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D9C12_14985 PF01219 Prokaryotic diacylglycerol kinase D9C12_14990 PF02130 Uncharacterized protein family UPF0054 D9C12_14995 PF01966 HD domain D9C12_14995 PF07698 7TM receptor with intracellular HD hydrolase D9C12_14995 PF07697 7TM-HD extracellular D9C12_15000 PF02562 PhoH-like protein D9C12_15005 PF06898 Putative stage IV sporulation protein YqfD D9C12_15010 PF07873 YabP family D9C12_15020 PF12127 SigmaW regulon antibacterial D9C12_15025 PF01957 NfeD-like C-terminal, partner-binding D9C12_15025 PF01972 Serine dehydrogenase proteinase D9C12_15030 PF09424 Yqey-like protein D9C12_15035 PF01165 Ribosomal protein S21 D9C12_15040 PF02690 Na+/Pi-cotransporter D9C12_15045 PF04055 Radical SAM superfamily D9C12_15045 PF01938 TRAM domain D9C12_15045 PF00919 Uncharacterized protein family UPF0004 D9C12_15050 PF04452 RNA methyltransferase D9C12_15060 PF00684 DnaJ central domain D9C12_15060 PF01556 DnaJ C terminal domain D9C12_15060 PF00226 DnaJ domain D9C12_15065 PF00012 Hsp70 protein D9C12_15070 PF01025 GrpE D9C12_15075 PF01628 HrcA protein C terminal domain D9C12_15080 PF06969 HemN C-terminal domain D9C12_15080 PF04055 Radical SAM superfamily D9C12_15085 PF00009 Elongation factor Tu GTP binding domain D9C12_15085 PF03144 Elongation factor Tu domain 2 D9C12_15085 PF06421 GTP-binding protein LepA C-terminus D9C12_15085 PF00679 Elongation factor G C-terminus D9C12_15090 PF12438 Protein of unknown function (DUF3679) D9C12_15095 PF07454 Stage II sporulation protein P (SpoIIP) D9C12_15100 PF03418 Germination protease D9C12_15105 PF01649 Ribosomal protein S20 D9C12_15110 PF06144 DNA polymerase III, delta subunit D9C12_15120 PF14141 YqzM-like protein D9C12_15125 PF00753 Metallo-beta-lactamase superfamily D9C12_15125 PF03772 Competence protein D9C12_15125 PF13567 Domain of unknown function (DUF4131) D9C12_15130 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region D9C12_15135 PF10531 SLBB domain D9C12_15140 PF14748 Pyrroline-5-carboxylate reductase dimerisation D9C12_15140 PF03807 NADP oxidoreductase coenzyme F420-dependent D9C12_15145 PF13649 Methyltransferase domain D9C12_15155 PF01966 HD domain D9C12_15160 PF01467 Cytidylyltransferase-like D9C12_15165 PF01985 CRS1 / YhbY (CRM) domain D9C12_15170 PF01488 Shikimate / quinate 5-dehydrogenase D9C12_15170 PF08501 Shikimate dehydrogenase substrate binding domain D9C12_15170 PF18317 Shikimate 5'-dehydrogenase C-terminal domain D9C12_15175 PF01926 50S ribosome-binding GTPase D9C12_15185 PF08970 Sporulation inhibitor A D9C12_15190 PF00657 GDSL-like Lipase/Acylhydrolase D9C12_15195 PF01471 Putative peptidoglycan binding domain D9C12_15195 PF01510 N-acetylmuramoyl-L-alanine amidase D9C12_15200 PF09335 SNARE associated Golgi protein D9C12_15205 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain D9C12_15205 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase D9C12_15215 PF14040 Deoxyribonuclease NucA/NucB D9C12_15220 PF04542 Sigma-70 region 2 D9C12_15220 PF04545 Sigma-70, region 4 D9C12_15235 PF10415 Fumarase C C-terminus D9C12_15235 PF00206 Lyase D9C12_15240 PF03466 LysR substrate binding domain D9C12_15240 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D9C12_15255 PF18801 response regulator aspartate phosphatase H, N terminal D9C12_15255 PF13176 Tetratricopeptide repeat D9C12_15305 PF18593 CdiI immunity protein D9C12_15315 PF00665 Integrase core domain D9C12_15320 PF01695 IstB-like ATP binding protein D9C12_15355 PF17356 Phage-like element PBSX protein XtrA D9C12_15380 PF13411 MerR HTH family regulatory protein D9C12_15380 PF06445 GyrI-like small molecule binding domain D9C12_15385 PF07690 Major Facilitator Superfamily D9C12_15390 PF00583 Acetyltransferase (GNAT) family D9C12_15395 PF00872 Transposase, Mutator family D9C12_15405 PF01595 Cyclin M transmembrane N-terminal domain D9C12_15405 PF03471 Transporter associated domain D9C12_15405 PF00571 CBS domain D9C12_15410 PF14142 YrzO-like protein D9C12_15415 PF00892 EamA-like transporter family D9C12_15420 PF03466 LysR substrate binding domain D9C12_15420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D9C12_15430 PF16916 Dimerisation domain of Zinc Transporter D9C12_15430 PF01545 Cation efflux family D9C12_15435 PF01609 Transposase DDE domain D9C12_15445 PF05525 Branched-chain amino acid transport protein D9C12_15450 PF05437 Branched-chain amino acid transport protein (AzlD) D9C12_15455 PF03591 AzlC protein D9C12_15460 PF01037 Lrp/AsnC ligand binding domain D9C12_15465 PF01337 Barstar (barnase inhibitor) D9C12_15475 PF00857 Isochorismatase family D9C12_15480 PF10823 Protein of unknown function (DUF2568) D9C12_15490 PF05163 DinB family D9C12_15495 PF04439 Streptomycin adenylyltransferase D9C12_15500 PF03060 Nitronate monooxygenase D9C12_15515 PF01177 Asp/Glu/Hydantoin racemase D9C12_15520 PF15493 Domain of unknown function, YrpD D9C12_15525 PF09680 Family of unknown function D9C12_15535 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment D9C12_15540 PF04542 Sigma-70 region 2 D9C12_15540 PF08281 Sigma-70, region 4 D9C12_15545 PF00248 Aldo/keto reductase family D9C12_15550 PF01374 Glycosyl hydrolase family 46 D9C12_15560 PF00561 alpha/beta hydrolase fold D9C12_15580 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D9C12_15590 PF07875 Coat F domain D9C12_15595 PF00107 Zinc-binding dehydrogenase D9C12_15595 PF13823 Alcohol dehydrogenase GroES-associated D9C12_15595 PF08240 Alcohol dehydrogenase GroES-like domain D9C12_15605 PF07875 Coat F domain D9C12_15610 PF13411 MerR HTH family regulatory protein D9C12_15620 PF00107 Zinc-binding dehydrogenase D9C12_15620 PF08240 Alcohol dehydrogenase GroES-like domain D9C12_15625 PF01965 DJ-1/PfpI family D9C12_15630 PF00251 Glycosyl hydrolases family 32 N-terminal domain D9C12_15630 PF08244 Glycosyl hydrolases family 32 C terminal D9C12_15635 PF03613 PTS system mannose/fructose/sorbose family IID component D9C12_15640 PF03609 PTS system sorbose-specific iic component D9C12_15645 PF03830 PTS system sorbose subfamily IIB component D9C12_15650 PF03610 PTS system fructose IIA component D9C12_15655 PF03610 PTS system fructose IIA component D9C12_15655 PF00874 PRD domain D9C12_15655 PF00158 Sigma-54 interaction domain D9C12_15665 PF00324 Amino acid permease D9C12_15670 PF01810 LysE type translocator D9C12_15675 PF11495 Archaeal transcriptional regulator TrmB D9C12_15675 PF01978 Sugar-specific transcriptional regulator TrmB D9C12_15680 PF04542 Sigma-70 region 2 D9C12_15680 PF08281 Sigma-70, region 4 D9C12_15685 PF11738 Protein of unknown function (DUF3298) D9C12_15685 PF13739 Deacetylase PdaC D9C12_15695 PF14145 YrhK-like protein D9C12_15700 PF00175 Oxidoreductase NAD-binding domain D9C12_15700 PF00067 Cytochrome P450 D9C12_15700 PF00667 FAD binding domain D9C12_15700 PF00258 Flavodoxin D9C12_15705 PF16295 Tetracyclin repressor-like, C-terminal domain D9C12_15705 PF00440 Bacterial regulatory proteins, tetR family D9C12_15710 PF08241 Methyltransferase domain D9C12_15720 PF09501 Probable sporulation protein (Bac_small_yrzI) D9C12_15725 PF01226 Formate/nitrite transporter D9C12_15730 PF10057 Uncharacterized conserved protein (DUF2294) D9C12_15735 PF00037 4Fe-4S binding domain D9C12_15735 PF04879 Molybdopterin oxidoreductase Fe4S4 domain D9C12_15735 PF00384 Molybdopterin oxidoreductase D9C12_15735 PF01568 Molydopterin dinucleotide binding domain D9C12_15735 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region D9C12_15740 PF07849 Protein of unknown function (DUF1641) D9C12_15745 PF14143 YrhC-like protein D9C12_15750 PF01053 Cys/Met metabolism PLP-dependent enzyme D9C12_15755 PF00291 Pyridoxal-phosphate dependent enzyme D9C12_15760 PF01048 Phosphorylase superfamily D9C12_15765 PF13649 Methyltransferase domain D9C12_15770 PF10750 Protein of unknown function (DUF2536) D9C12_15775 PF07423 Domain of unknown function (DUF1510) D9C12_15780 PF03717 Penicillin-binding Protein dimerisation domain D9C12_15780 PF00905 Penicillin binding protein transpeptidase domain D9C12_15785 PF03449 Transcription elongation factor, N-terminal D9C12_15785 PF01272 Transcription elongation factor, GreA/GreB, C-term D9C12_15790 PF00485 Phosphoribulokinase / Uridine kinase family D9C12_15810 PF02618 YceG-like family D9C12_15815 PF06949 Protein of unknown function (DUF1292) D9C12_15820 PF03652 Holliday junction resolvase D9C12_15825 PF06135 IreB regulatory phosphoprotein D9C12_15830 PF01411 tRNA synthetases class II (A) D9C12_15830 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D9C12_15830 PF02272 DHHA1 domain D9C12_15835 PF01594 AI-2E family transporter D9C12_15840 PF00005 ABC transporter D9C12_15845 PF00497 Bacterial extracellular solute-binding proteins, family 3 D9C12_15855 PF00528 Binding-protein-dependent transport system inner membrane component D9C12_15865 PF13056 Protein of unknown function (DUF3918) D9C12_15875 PF05239 PRC-barrel domain D9C12_15880 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain D9C12_15880 PF13538 UvrD-like helicase C-terminal domain D9C12_15880 PF14490 Helix-hairpin-helix containing domain D9C12_15885 PF13181 Tetratricopeptide repeat D9C12_15885 PF07719 Tetratricopeptide repeat D9C12_15895 PF00266 Aminotransferase class-V D9C12_15900 PF02082 Transcriptional regulator D9C12_15905 PF05496 Holliday junction DNA helicase RuvB P-loop domain D9C12_15905 PF12002 MgsA AAA+ ATPase C terminal D9C12_15905 PF16193 AAA C-terminal domain D9C12_15910 PF00899 ThiF family D9C12_15920 PF01336 OB-fold nucleic acid binding domain D9C12_15920 PF00152 tRNA synthetases class II (D, K and N) D9C12_15920 PF02938 GAD domain D9C12_15925 PF03129 Anticodon binding domain D9C12_15925 PF13393 Histidyl-tRNA synthetase D9C12_15930 PF17449 Uncharacterized YrzK-like D9C12_15935 PF01520 N-acetylmuramoyl-L-alanine amidase D9C12_15935 PF08239 Bacterial SH3 domain D9C12_15940 PF02580 D-Tyr-tRNA(Tyr) deacylase D9C12_15945 PF04607 Region found in RelA / SpoT proteins D9C12_15945 PF13291 ACT domain D9C12_15945 PF02824 TGS domain D9C12_15950 PF00156 Phosphoribosyl transferase domain D9C12_15955 PF17768 RecJ OB domain D9C12_15955 PF01368 DHH family D9C12_15955 PF02272 DHHA1 domain D9C12_15955 PF10141 Single-strand DNA-specific exonuclease, C terminal domain D9C12_15960 PF06305 Lipopolysaccharide assembly protein A domain D9C12_15965 PF02080 TrkA-C domain D9C12_15970 PF02355 Protein export membrane protein D9C12_15970 PF07549 SecD/SecF GG Motif D9C12_15975 PF13797 Post-transcriptional regulator D9C12_15980 PF14667 Polysaccharide biosynthesis C-terminal domain D9C12_15980 PF01943 Polysaccharide biosynthesis protein D9C12_15985 PF04239 Protein of unknown function (DUF421) D9C12_15990 PF12670 Protein of unknown function (DUF3792) D9C12_15995 PF02699 Preprotein translocase subunit D9C12_16000 PF01702 Queuine tRNA-ribosyltransferase D9C12_16005 PF02547 Queuosine biosynthesis protein D9C12_16010 PF11146 Protein of unknown function (DUF2905) D9C12_16015 PF05496 Holliday junction DNA helicase RuvB P-loop domain D9C12_16015 PF05491 RuvB C-terminal winged helix domain D9C12_16015 PF17864 RuvB AAA lid domain D9C12_16020 PF07499 RuvA, C-terminal domain D9C12_16020 PF01330 RuvA N terminal domain D9C12_16025 PF08977 Bypass of Forespore C, N terminal D9C12_16025 PF08955 BofC C-terminal domain D9C12_16030 PF07690 Major Facilitator Superfamily D9C12_16035 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D9C12_16035 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D9C12_16060 PF01235 Sodium:alanine symporter family D9C12_16065 PF01709 Transcriptional regulator D9C12_16070 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) D9C12_16075 PF01476 LysM domain D9C12_16080 PF02445 Quinolinate synthetase A protein D9C12_16085 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain D9C12_16085 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain D9C12_16090 PF00890 FAD binding domain D9C12_16090 PF02910 Fumarate reductase flavoprotein C-term D9C12_16095 PF00266 Aminotransferase class-V D9C12_16100 PF08279 HTH domain D9C12_16100 PF02829 3H domain D9C12_16105 PF00800 Prephenate dehydratase D9C12_16105 PF01842 ACT domain D9C12_16110 PF01842 ACT domain D9C12_16115 PF01018 GTP1/OBG D9C12_16115 PF09269 Domain of unknown function (DUF1967) D9C12_16115 PF01926 50S ribosome-binding GTPase D9C12_16120 PF14682 Sporulation initiation phospho-transferase B, C-terminal D9C12_16120 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain D9C12_16130 PF01016 Ribosomal L27 protein D9C12_16135 PF04327 Cysteine protease Prp D9C12_16140 PF00829 Ribosomal prokaryotic L21 protein D9C12_16145 PF02163 Peptidase family M50 D9C12_16150 PF01551 Peptidase family M23 D9C12_16155 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain D9C12_16160 PF03775 Septum formation inhibitor MinC, C-terminal domain D9C12_16165 PF04093 rod shape-determining protein MreD D9C12_16170 PF04085 rod shape-determining protein MreC D9C12_16180 PF04002 RadC-like JAB domain D9C12_16180 PF00633 Helix-hairpin-helix motif D9C12_16185 PF02545 Maf-like protein D9C12_16190 PF05036 Sporulation related domain D9C12_16195 PF06750 Bacterial Peptidase A24 N-terminal domain D9C12_16195 PF01478 Type IV leader peptidase family D9C12_16200 PF08245 Mur ligase middle domain D9C12_16200 PF02875 Mur ligase family, glutamate ligase domain D9C12_16205 PF00133 tRNA synthetases class I (I, L, M and V) D9C12_16205 PF10458 Valyl tRNA synthetase tRNA binding arm D9C12_16205 PF08264 Anticodon-binding domain of tRNA D9C12_16220 PF01476 LysM domain D9C12_16225 PF00202 Aminotransferase class-III D9C12_16230 PF00490 Delta-aminolevulinic acid dehydratase D9C12_16235 PF02602 Uroporphyrinogen-III synthase HemD D9C12_16240 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain D9C12_16240 PF03900 Porphobilinogen deaminase, C-terminal domain D9C12_16245 PF01578 Cytochrome C assembly protein D9C12_16250 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain D9C12_16250 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain D9C12_16250 PF01488 Shikimate / quinate 5-dehydrogenase D9C12_16265 PF02190 ATP-dependent protease La (LON) substrate-binding domain D9C12_16265 PF05362 Lon protease (S16) C-terminal proteolytic domain D9C12_16265 PF00004 ATPase family associated with various cellular activities (AAA) D9C12_16275 PF06689 ClpX C4-type zinc finger D9C12_16275 PF07724 AAA domain (Cdc48 subfamily) D9C12_16275 PF10431 C-terminal, D2-small domain, of ClpB protein D9C12_16280 PF05697 Bacterial trigger factor protein (TF) D9C12_16280 PF05698 Bacterial trigger factor protein (TF) C-terminus D9C12_16280 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase D9C12_16290 PF00694 Aconitase C-terminal domain D9C12_16295 PF00330 Aconitase family (aconitate hydratase) D9C12_16305 PF00682 HMGL-like D9C12_16305 PF08502 LeuA allosteric (dimerisation) domain D9C12_16310 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain D9C12_16310 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain D9C12_16315 PF01842 ACT domain D9C12_16315 PF10369 Small subunit of acetolactate synthase D9C12_16320 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D9C12_16320 PF00205 Thiamine pyrophosphate enzyme, central domain D9C12_16320 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D9C12_16335 PF11181 Heat induced stress protein YflT D9C12_16335 PF09557 Domain of unknown function (DUF2382) D9C12_16355 PF01420 Type I restriction modification DNA specificity domain D9C12_16360 PF02384 N-6 DNA Methylase D9C12_16365 PF04851 Type III restriction enzyme, res subunit D9C12_16365 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) D9C12_16365 PF00271 Helicase conserved C-terminal domain D9C12_16365 PF08463 EcoEI R protein C-terminal D9C12_16380 PF00589 Phage integrase family D9C12_16380 PF02899 Phage integrase, N-terminal SAM-like domain D9C12_16390 PF12850 Calcineurin-like phosphoesterase superfamily domain D9C12_16395 PF01725 Ham1 family D9C12_16400 PF01138 3' exoribonuclease family, domain 1 D9C12_16400 PF03725 3' exoribonuclease family, domain 2 D9C12_16405 PF10646 Sporulation and spore germination D9C12_16410 PF01177 Asp/Glu/Hydantoin racemase D9C12_16415 PF01047 MarR family D9C12_16420 PF00196 Bacterial regulatory proteins, luxR family D9C12_16425 PF03061 Thioesterase superfamily D9C12_16430 PF13183 4Fe-4S dicluster domain D9C12_16430 PF13085 2Fe-2S iron-sulfur cluster binding domain D9C12_16435 PF02910 Fumarate reductase flavoprotein C-term D9C12_16435 PF00890 FAD binding domain D9C12_16440 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit D9C12_16445 PF10702 Protein of unknown function (DUF2507) D9C12_16450 PF01842 ACT domain D9C12_16450 PF00696 Amino acid kinase family D9C12_16450 PF13840 ACT domain D9C12_16460 PF01541 GIY-YIG catalytic domain D9C12_16460 PF02151 UvrB/uvrC motif D9C12_16460 PF08459 UvrC Helix-hairpin-helix N-terminal D9C12_16465 PF00085 Thioredoxin D9C12_16470 PF06964 Alpha-L-arabinofuranosidase C-terminal domain D9C12_16475 PF01012 Electron transfer flavoprotein domain D9C12_16475 PF00766 Electron transfer flavoprotein FAD-binding domain D9C12_16480 PF01012 Electron transfer flavoprotein domain D9C12_16485 PF00378 Enoyl-CoA hydratase/isomerase D9C12_16490 PF00440 Bacterial regulatory proteins, tetR family D9C12_16490 PF08359 YsiA-like protein, C-terminal region D9C12_16495 PF00501 AMP-binding enzyme D9C12_16495 PF13193 AMP-binding enzyme C-terminal domain D9C12_16500 PF03994 Domain of Unknown Function (DUF350) D9C12_16505 PF00488 MutS domain V D9C12_16505 PF01713 Smr domain D9C12_16510 PF14791 DNA polymerase beta thumb D9C12_16510 PF14716 Helix-hairpin-helix domain D9C12_16510 PF02811 PHP domain D9C12_16515 PF02674 Colicin V production protein D9C12_16520 PF05164 Cell division protein ZapA D9C12_16525 PF11858 Domain of unknown function (DUF3378) D9C12_16525 PF01351 Ribonuclease HII D9C12_16530 PF03484 tRNA synthetase B5 domain D9C12_16530 PF03147 Ferredoxin-fold anticodon binding domain D9C12_16530 PF01588 Putative tRNA binding domain D9C12_16530 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain D9C12_16530 PF03483 B3/4 domain D9C12_16535 PF01409 tRNA synthetases class II core domain (F) D9C12_16535 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain D9C12_16545 PF08032 RNA 2'-O ribose methyltransferase substrate binding D9C12_16545 PF00588 SpoU rRNA Methylase family D9C12_16550 PF14098 Small, acid-soluble spore protein I D9C12_16555 PF13556 PucR C-terminal helix-turn-helix domain D9C12_16555 PF05651 Putative sugar diacid recognition D9C12_16555 PF17853 GGDEF-like domain D9C12_16560 PF02913 FAD linked oxidases, C-terminal domain D9C12_16560 PF01565 FAD binding domain D9C12_16565 PF13183 4Fe-4S dicluster domain D9C12_16565 PF02754 Cysteine-rich domain D9C12_16570 PF12681 Glyoxalase-like domain D9C12_16580 PF13722 5TM C-terminal transporter carbon starvation CstA D9C12_16580 PF02554 Carbon starvation protein CstA D9C12_16585 PF06964 Alpha-L-arabinofuranosidase C-terminal domain D9C12_16590 PF00528 Binding-protein-dependent transport system inner membrane component D9C12_16595 PF00528 Binding-protein-dependent transport system inner membrane component D9C12_16600 PF01547 Bacterial extracellular solute-binding protein D9C12_16605 PF13685 Iron-containing alcohol dehydrogenase D9C12_16615 PF00596 Class II Aldolase and Adducin N-terminal domain D9C12_16620 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D9C12_16620 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D9C12_16625 PF11762 L-arabinose isomerase C-terminal domain D9C12_16625 PF02610 L-arabinose isomerase D9C12_16630 PF04616 Glycosyl hydrolases family 43 D9C12_16635 PF05343 M42 glutamyl aminopeptidase D9C12_16645 PF06961 Protein of unknown function (DUF1294) D9C12_16650 PF00453 Ribosomal protein L20 D9C12_16655 PF01632 Ribosomal protein L35 D9C12_16660 PF00707 Translation initiation factor IF-3, C-terminal domain D9C12_16660 PF05198 Translation initiation factor IF-3, N-terminal domain D9C12_16670 PF04172 LrgB-like family D9C12_16675 PF03788 LrgA family D9C12_16680 PF00072 Response regulator receiver domain D9C12_16680 PF04397 LytTr DNA-binding domain D9C12_16685 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D9C12_16685 PF07694 5TMR of 5TMR-LYT D9C12_16685 PF06580 Histidine kinase D9C12_16695 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D9C12_16695 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D9C12_16695 PF03129 Anticodon binding domain D9C12_16695 PF02824 TGS domain D9C12_16700 PF08812 YtxC-like family D9C12_16705 PF09335 SNARE associated Golgi protein D9C12_16710 PF01695 IstB-like ATP binding protein D9C12_16710 PF07319 Primosomal protein DnaI N-terminus D9C12_16715 PF07261 Replication initiation and membrane attachment D9C12_16720 PF03477 ATP cone domain D9C12_16725 PF02675 S-adenosylmethionine decarboxylase D9C12_16730 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D9C12_16730 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D9C12_16735 PF01638 HxlR-like helix-turn-helix D9C12_16740 PF07690 Major Facilitator Superfamily D9C12_16745 PF00248 Aldo/keto reductase family D9C12_16750 PF01121 Dephospho-CoA kinase D9C12_16755 PF02659 Putative manganese efflux pump D9C12_16760 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain D9C12_16760 PF06827 Zinc finger found in FPG and IleRS D9C12_16760 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain D9C12_16765 PF00476 DNA polymerase family A D9C12_16765 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain D9C12_16765 PF01367 5'-3' exonuclease, C-terminal SAM fold D9C12_16775 PF00486 Transcriptional regulatory protein, C terminal D9C12_16775 PF00072 Response regulator receiver domain D9C12_16780 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain D9C12_16780 PF00056 lactate/malate dehydrogenase, NAD binding domain D9C12_16785 PF00180 Isocitrate/isopropylmalate dehydrogenase D9C12_16790 PF00285 Citrate synthase, C-terminal domain D9C12_16800 PF04284 Protein of unknown function (DUF441) D9C12_16810 PF04186 FxsA cytoplasmic membrane protein D9C12_16815 PF02887 Pyruvate kinase, alpha/beta domain D9C12_16815 PF00224 Pyruvate kinase, barrel domain D9C12_16815 PF00391 PEP-utilising enzyme, mobile domain D9C12_16820 PF00365 Phosphofructokinase D9C12_16825 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit D9C12_16830 PF01039 Carboxyl transferase domain D9C12_16830 PF17848 Acetyl-coA carboxylase zinc finger domain D9C12_16835 PF03949 Malic enzyme, NAD binding domain D9C12_16835 PF00390 Malic enzyme, N-terminal domain D9C12_16840 PF17657 Bacterial DNA polymerase III alpha subunit finger domain D9C12_16840 PF07733 Bacterial DNA polymerase III alpha NTPase domain D9C12_16840 PF01336 OB-fold nucleic acid binding domain D9C12_16840 PF14579 Helix-hairpin-helix motif D9C12_16840 PF02811 PHP domain D9C12_16845 PF14034 Sporulation protein YtrH D9C12_16860 PF02272 DHHA1 domain D9C12_16860 PF01368 DHH family D9C12_16865 PF14007 YtpI-like protein D9C12_16870 PF07085 DRTGG domain D9C12_16870 PF03061 Thioesterase superfamily D9C12_16870 PF00571 CBS domain D9C12_16870 PF00392 Bacterial regulatory proteins, gntR family D9C12_16890 PF00206 Lyase D9C12_16890 PF14698 Argininosuccinate lyase C-terminal D9C12_16895 PF00764 Arginosuccinate synthase D9C12_16900 PF00994 Probable molybdopterin binding domain D9C12_16905 PF00871 Acetokinase family D9C12_16915 PF02384 N-6 DNA Methylase D9C12_16920 PF08534 Redoxin D9C12_16925 PF09579 Sporulation protein YtfJ (Spore_YtfJ) D9C12_16930 PF11167 Protein of unknown function (DUF2953) D9C12_16935 PF06271 RDD family D9C12_16940 PF01343 Peptidase family S49 D9C12_16945 PF01513 ATP-NAD kinase D9C12_16960 PF07969 Amidohydrolase family D9C12_16965 PF00501 AMP-binding enzyme D9C12_16965 PF13193 AMP-binding enzyme C-terminal domain D9C12_16970 PF00269 Small, acid-soluble spore proteins, alpha/beta type D9C12_16975 PF02926 THUMP domain D9C12_16975 PF02568 Thiamine biosynthesis protein (ThiI) D9C12_16980 PF00266 Aminotransferase class-V D9C12_16985 PF05525 Branched-chain amino acid transport protein D9C12_16990 PF06160 Septation ring formation regulator, EzrA D9C12_16995 PF02811 PHP domain D9C12_17000 PF00440 Bacterial regulatory proteins, tetR family D9C12_17005 PF13185 GAF domain D9C12_17010 PF00990 Diguanylate cyclase, GGDEF domain D9C12_17020 PF00163 Ribosomal protein S4/S9 N-terminal domain D9C12_17020 PF01479 S4 domain D9C12_17025 PF01479 S4 domain D9C12_17025 PF00579 tRNA synthetases class I (W and Y) D9C12_17030 PF13193 AMP-binding enzyme C-terminal domain D9C12_17030 PF00501 AMP-binding enzyme D9C12_17035 PF00583 Acetyltransferase (GNAT) family D9C12_17040 PF00571 CBS domain D9C12_17045 PF00850 Histone deacetylase domain D9C12_17050 PF13677 Membrane MotB of proton-channel complex MotA/MotB D9C12_17050 PF00691 OmpA family D9C12_17055 PF01618 MotA/TolQ/ExbB proton channel family D9C12_17060 PF00356 Bacterial regulatory proteins, lacI family D9C12_17065 PF01817 Chorismate mutase type II D9C12_17065 PF00793 DAHP synthetase I family D9C12_17070 PF11009 Protein of unknown function (DUF2847) D9C12_17075 PF12732 YtxH-like protein D9C12_17080 PF06103 Bacterial protein of unknown function (DUF948) D9C12_17090 PF09397 Ftsk gamma domain D9C12_17090 PF01580 FtsK/SpoIIIE family D9C12_17090 PF17854 FtsK alpha domain D9C12_17095 PF14794 Domain of unknown function (DUF4479) D9C12_17095 PF01588 Putative tRNA binding domain D9C12_17100 PF07285 Protein of unknown function (DUF1444) D9C12_17105 PF00085 Thioredoxin D9C12_17120 PF05343 M42 glutamyl aminopeptidase D9C12_17125 PF03413 Peptidase propeptide and YPEB domain D9C12_17130 PF03949 Malic enzyme, NAD binding domain D9C12_17130 PF00390 Malic enzyme, N-terminal domain D9C12_17135 PF00753 Metallo-beta-lactamase superfamily D9C12_17140 PF02390 Putative methyltransferase D9C12_17145 PF14165 YtzH-like protein D9C12_17150 PF01636 Phosphotransferase enzyme family D9C12_17155 PF00128 Alpha amylase, catalytic domain D9C12_17155 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) D9C12_17155 PF17999 Pullulanase N1-terminal domain D9C12_17160 PF00781 Diacylglycerol kinase catalytic domain D9C12_17175 PF00291 Pyridoxal-phosphate dependent enzyme D9C12_17180 PF01546 Peptidase family M20/M25/M40 D9C12_17190 PF05975 Bacterial ABC transporter protein EcsB D9C12_17195 PF00005 ABC transporter D9C12_17200 PF08220 DeoR-like helix-turn-helix domain D9C12_17205 PF01479 S4 domain D9C12_17205 PF00849 RNA pseudouridylate synthase D9C12_17210 PF14667 Polysaccharide biosynthesis C-terminal domain D9C12_17210 PF01943 Polysaccharide biosynthesis protein D9C12_17220 PF02028 BCCT, betaine/carnitine/choline family transporter D9C12_17225 PF10957 Sporulation protein Cse60 D9C12_17245 PF07470 Glycosyl Hydrolase Family 88 D9C12_17250 PF00528 Binding-protein-dependent transport system inner membrane component D9C12_17260 PF13416 Bacterial extracellular solute-binding protein D9C12_17265 PF00528 Binding-protein-dependent transport system inner membrane component D9C12_17270 PF01370 NAD dependent epimerase/dehydratase family D9C12_17275 PF00067 Cytochrome P450 D9C12_17280 PF04055 Radical SAM superfamily D9C12_17280 PF06968 Biotin and Thiamin Synthesis associated domain D9C12_17290 PF00155 Aminotransferase class I and II D9C12_17305 PF01738 Dienelactone hydrolase family D9C12_17330 PF11975 Family 4 glycosyl hydrolase C-terminal domain D9C12_17330 PF02056 Family 4 glycosyl hydrolase D9C12_17335 PF00581 Rhodanese-like domain D9C12_17340 PF08264 Anticodon-binding domain of tRNA D9C12_17340 PF00133 tRNA synthetases class I (I, L, M and V) D9C12_17340 PF13603 Leucyl-tRNA synthetase, Domain 2 D9C12_17340 PF09334 tRNA synthetases class I (M) D9C12_17345 PF14074 Protein of unknown function (DUF4257) D9C12_17350 PF13426 PAS domain D9C12_17350 PF01740 STAS domain D9C12_17355 PF07690 Major Facilitator Superfamily D9C12_17365 PF02687 FtsX-like permease family D9C12_17370 PF00005 ABC transporter D9C12_17375 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D9C12_17380 PF00486 Transcriptional regulatory protein, C terminal D9C12_17380 PF00072 Response regulator receiver domain D9C12_17385 PF02687 FtsX-like permease family D9C12_17385 PF12704 MacB-like periplasmic core domain D9C12_17390 PF00005 ABC transporter D9C12_17405 PF00005 ABC transporter D9C12_17410 PF00392 Bacterial regulatory proteins, gntR family D9C12_17420 PF10732 Protein of unknown function (DUF2524) D9C12_17425 PF04055 Radical SAM superfamily D9C12_17425 PF16199 Radical_SAM C-terminal domain D9C12_17430 PF06962 Putative rRNA methylase D9C12_17435 PF10776 Protein of unknown function (DUF2600) D9C12_17440 PF12146 Serine aminopeptidase, S33 D9C12_17445 PF00132 Bacterial transferase hexapeptide (six repeats) D9C12_17450 PF00324 Amino acid permease D9C12_17455 PF13537 Glutamine amidotransferase domain D9C12_17455 PF00733 Asparagine synthase D9C12_17460 PF00438 S-adenosylmethionine synthetase, N-terminal domain D9C12_17460 PF02773 S-adenosylmethionine synthetase, C-terminal domain D9C12_17460 PF02772 S-adenosylmethionine synthetase, central domain D9C12_17465 PF01293 Phosphoenolpyruvate carboxykinase D9C12_17470 PF10763 Protein of unknown function (DUF2584) D9C12_17475 PF00326 Prolyl oligopeptidase family D9C12_17485 PF00005 ABC transporter D9C12_17490 PF00528 Binding-protein-dependent transport system inner membrane component D9C12_17495 PF00293 NUDIX domain D9C12_17500 PF05105 Bacteriophage holin family D9C12_17505 PF00210 Ferritin-like domain D9C12_17515 PF13115 YtkA-like D9C12_17520 PF02664 S-Ribosylhomocysteinase (LuxS) D9C12_17525 PF01809 Putative membrane protein insertion efficiency factor D9C12_17530 PF00484 Carbonic anhydrase D9C12_17535 PF01197 Ribosomal protein L31 D9C12_17540 PF01654 Cytochrome bd terminal oxidase subunit I D9C12_17545 PF02322 Cytochrome bd terminal oxidase subunit II D9C12_17550 PF07561 Domain of Unknown Function (DUF1540) D9C12_17555 PF00950 ABC 3 transport family D9C12_17560 PF00950 ABC 3 transport family D9C12_17565 PF00005 ABC transporter D9C12_17570 PF01297 Zinc-uptake complex component A periplasmic D9C12_17580 PF13378 Enolase C-terminal domain-like D9C12_17580 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain D9C12_17585 PF13193 AMP-binding enzyme C-terminal domain D9C12_17585 PF00501 AMP-binding enzyme D9C12_17590 PF00378 Enoyl-CoA hydratase/isomerase D9C12_17595 PF00561 alpha/beta hydrolase fold D9C12_17600 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D9C12_17600 PF16582 Middle domain of thiamine pyrophosphate D9C12_17600 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D9C12_17605 PF00425 chorismate binding enzyme D9C12_17610 PF01258 Prokaryotic dksA/traR C4-type zinc finger D9C12_17615 PF00483 Nucleotidyl transferase D9C12_17620 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain D9C12_17620 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain D9C12_17620 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain D9C12_17625 PF01370 NAD dependent epimerase/dehydratase family D9C12_17630 PF00534 Glycosyl transferases group 1 D9C12_17630 PF13439 Glycosyltransferase Family 4 D9C12_17645 PF00534 Glycosyl transferases group 1 D9C12_17645 PF13439 Glycosyltransferase Family 4 D9C12_17650 PF01636 Phosphotransferase enzyme family D9C12_17655 PF03073 TspO/MBR family D9C12_17660 PF00343 Carbohydrate phosphorylase D9C12_17665 PF08323 Starch synthase catalytic domain D9C12_17665 PF00534 Glycosyl transferases group 1 D9C12_17670 PF00483 Nucleotidyl transferase D9C12_17675 PF00483 Nucleotidyl transferase D9C12_17805 PF09515 Thiamine transporter protein (Thia_YuaJ) D9C12_17810 PF00583 Acetyltransferase (GNAT) family D9C12_17815 PF01145 SPFH domain / Band 7 family D9C12_17815 PF15975 Flotillin D9C12_17825 PF12867 DinB superfamily D9C12_17840 PF00465 Iron-containing alcohol dehydrogenase D9C12_17855 PF17735 Biofilm surface layer A D9C12_17860 PF02080 TrkA-C domain D9C12_17860 PF02254 TrkA-N domain D9C12_17865 PF02386 Cation transport protein D9C12_17870 PF05360 yiaA/B two helix domain D9C12_17875 PF13457 GW (Gly-Tryp) dipeptide domain D9C12_17875 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase D9C12_17880 PF07690 Major Facilitator Superfamily D9C12_17885 PF05995 Cysteine dioxygenase type I D9C12_17895 PF02673 Bacitracin resistance protein BacA D9C12_17900 PF01594 AI-2E family transporter D9C12_17905 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D9C12_17905 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D9C12_17910 PF06134 L-rhamnose isomerase (RhaA) D9C12_17915 PF05336 L-rhamnose mutarotase D9C12_17920 PF02782 FGGY family of carbohydrate kinases, C-terminal domain D9C12_17920 PF00370 FGGY family of carbohydrate kinases, N-terminal domain D9C12_17925 PF08220 DeoR-like helix-turn-helix domain D9C12_17925 PF00455 DeoR C terminal sensor domain D9C12_17945 PF02743 Cache domain D9C12_17945 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D9C12_17945 PF00672 HAMP domain D9C12_17950 PF00672 HAMP domain D9C12_17950 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D9C12_17950 PF02743 Cache domain D9C12_17955 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D9C12_17955 PF00672 HAMP domain D9C12_17955 PF02743 Cache domain D9C12_17980 PF01595 Cyclin M transmembrane N-terminal domain D9C12_17980 PF00571 CBS domain D9C12_17980 PF03471 Transporter associated domain D9C12_17985 PF04298 Putative neutral zinc metallopeptidase D9C12_17995 PF11458 Membrane-integrating protein Mistic D9C12_18000 PF07885 Ion channel D9C12_18000 PF02254 TrkA-N domain D9C12_18005 PF08868 YugN-like family D9C12_18015 PF00342 Phosphoglucose isomerase D9C12_18020 PF00465 Iron-containing alcohol dehydrogenase D9C12_18025 PF00465 Iron-containing alcohol dehydrogenase D9C12_18030 PF04070 Domain of unknown function (DUF378) D9C12_18035 PF00575 S1 RNA binding domain D9C12_18040 PF00155 Aminotransferase class I and II D9C12_18045 PF01037 Lrp/AsnC ligand binding domain D9C12_18050 PF08386 TAP-like protein D9C12_18050 PF00561 alpha/beta hydrolase fold D9C12_18055 PF08958 Domain of unknown function (DUF1871) D9C12_18060 PF00155 Aminotransferase class I and II D9C12_18065 PF00512 His Kinase A (phospho-acceptor) domain D9C12_18065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D9C12_18070 PF08810 Kinase associated protein B D9C12_18075 PF00929 Exonuclease D9C12_18085 PF07690 Major Facilitator Superfamily D9C12_18090 PF00905 Penicillin binding protein transpeptidase domain D9C12_18090 PF00912 Transglycosylase D9C12_18095 PF04134 Protein of unknown function, DUF393 D9C12_18100 PF17328 Family of unknown function (DUF5366) D9C12_18105 PF00989 PAS fold D9C12_18105 PF17203 Single cache domain 3 D9C12_18105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D9C12_18105 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain D9C12_18110 PF00072 Response regulator receiver domain D9C12_18135 PF03390 2-hydroxycarboxylate transporter family D9C12_18145 PF00361 Proton-conducting membrane transporter D9C12_18145 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus D9C12_18145 PF13244 Domain of unknown function (DUF4040) D9C12_18150 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter D9C12_18155 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L D9C12_18160 PF00361 Proton-conducting membrane transporter D9C12_18165 PF01899 Na+/H+ ion antiporter subunit D9C12_18170 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) D9C12_18175 PF03334 Na+/H+ antiporter subunit D9C12_18180 PF03061 Thioesterase superfamily D9C12_18185 PF00196 Bacterial regulatory proteins, luxR family D9C12_18185 PF00072 Response regulator receiver domain D9C12_18190 PF07730 Histidine kinase D9C12_18190 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D9C12_18200 PF00348 Polyprenyl synthetase D9C12_18205 PF08181 DegQ (SacQ) family D9C12_18220 PF08668 HDOD domain D9C12_18220 PF00563 EAL domain D9C12_18225 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain D9C12_18225 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain D9C12_18225 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family D9C12_18230 PF00857 Isochorismatase family D9C12_18235 PF07997 Protein of unknown function (DUF1694) D9C12_18240 PF14166 YueH-like protein D9C12_18245 PF10676 Spore germination protein gerPA/gerPF D9C12_18250 PF01594 AI-2E family transporter D9C12_18255 PF10049 Protein of unknown function (DUF2283) D9C12_18260 PF10842 Protein of unknown function (DUF2642) D9C12_18265 PF01966 HD domain D9C12_18270 PF00106 short chain dehydrogenase D9C12_18275 PF17355 Family of unknown function (DUF5383) D9C12_18285 PF01580 FtsK/SpoIIIE family D9C12_18285 PF12538 DNA transporter D9C12_18290 PF10140 WXG100 protein secretion system (Wss), protein YukC D9C12_18300 PF06013 Proteins of 100 residues with WXG D9C12_18310 PF13556 PucR C-terminal helix-turn-helix domain D9C12_18310 PF06018 CodY GAF-like domain D9C12_18310 PF17853 GGDEF-like domain D9C12_18315 PF05222 Alanine dehydrogenase/PNT, N-terminal domain D9C12_18315 PF01262 Alanine dehydrogenase/PNT, C-terminal domain D9C12_18320 PF10042 Uncharacterized conserved protein (DUF2278) D9C12_18325 PF03621 MbtH-like protein D9C12_18335 PF00857 Isochorismatase family D9C12_18335 PF00550 Phosphopantetheine attachment site D9C12_18340 PF13193 AMP-binding enzyme C-terminal domain D9C12_18340 PF00501 AMP-binding enzyme D9C12_18345 PF00425 chorismate binding enzyme D9C12_18350 PF00106 short chain dehydrogenase D9C12_18355 PF00756 Putative esterase D9C12_18360 PF00174 Oxidoreductase molybdopterin binding domain D9C12_18365 PF02632 BioY family D9C12_18370 PF13726 Na+-H+ antiporter family D9C12_18370 PF03553 Na+/H+ antiporter family D9C12_18375 PF00883 Cytosol aminopeptidase family, catalytic domain D9C12_18375 PF02789 Cytosol aminopeptidase family, N-terminal domain D9C12_18380 PF02681 Divergent PAP2 family D9C12_18385 PF06725 3D domain D9C12_18390 PF14068 Putative membrane protein D9C12_18395 PF17302 Family of unknown function (DUF5351) D9C12_18400 PF07992 Pyridine nucleotide-disulphide oxidoreductase D9C12_18405 PF07992 Pyridine nucleotide-disulphide oxidoreductase D9C12_18415 PF00478 IMP dehydrogenase / GMP reductase domain D9C12_18430 PF01521 Iron-sulphur cluster biosynthesis D9C12_18435 PF01678 Diaminopimelate epimerase D9C12_18440 PF01773 Na+ dependent nucleoside transporter N-terminus D9C12_18440 PF07662 Na+ dependent nucleoside transporter C-terminus D9C12_18450 PF07293 Protein of unknown function (DUF1450) D9C12_18455 PF07992 Pyridine nucleotide-disulphide oxidoreductase D9C12_18460 PF07315 Protein of unknown function (DUF1462) D9C12_18465 PF01106 NifU-like domain D9C12_18470 PF00326 Prolyl oligopeptidase family D9C12_18470 PF07676 WD40-like Beta Propeller Repeat D9C12_18475 PF00288 GHMP kinases N terminal domain D9C12_18475 PF08544 GHMP kinases C terminal D9C12_18480 PF00291 Pyridoxal-phosphate dependent enzyme D9C12_18485 PF01842 ACT domain D9C12_18485 PF03447 Homoserine dehydrogenase, NAD binding domain D9C12_18485 PF00742 Homoserine dehydrogenase D9C12_18495 PF04608 Phosphatidylglycerophosphatase A D9C12_18500 PF13344 Haloacid dehalogenase-like hydrolase D9C12_18505 PF01934 Protein of unknown function DUF86 D9C12_18510 PF06265 Protein of unknown function (DUF1027) D9C12_18515 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) D9C12_18520 PF04055 Radical SAM superfamily D9C12_18520 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family D9C12_18525 PF01551 Peptidase family M23 D9C12_18530 PF09560 Sporulation protein YunB (Spo_YunB) D9C12_18535 PF08827 Domain of unknown function (DUF1805) D9C12_18540 PF02872 5'-nucleotidase, C-terminal domain D9C12_18545 PF01925 Sulfite exporter TauE/SafE D9C12_18550 PF01904 Protein of unknown function DUF72 D9C12_18560 PF01979 Amidohydrolase family D9C12_18565 PF07905 Purine catabolism regulatory protein-like family D9C12_18565 PF13556 PucR C-terminal helix-turn-helix domain D9C12_18565 PF17853 GGDEF-like domain D9C12_18570 PF00860 Permease family D9C12_18575 PF00860 Permease family D9C12_18580 PF01014 Uricase D9C12_18580 PF09349 OHCU decarboxylase D9C12_18585 PF00576 HIUase/Transthyretin family D9C12_18595 PF09680 Family of unknown function D9C12_18600 PF00111 2Fe-2S iron-sulfur cluster binding domain D9C12_18600 PF01799 [2Fe-2S] binding domain D9C12_18605 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase D9C12_18605 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain D9C12_18610 PF00941 FAD binding domain in molybdopterin dehydrogenase D9C12_18615 PF12804 MobA-like NTP transferase domain D9C12_18620 PF13478 XdhC Rossmann domain D9C12_18620 PF02625 XdhC and CoxI family D9C12_18625 PF00266 Aminotransferase class-V D9C12_18630 PF01546 Peptidase family M20/M25/M40 D9C12_18640 PF04231 Endonuclease I D9C12_18645 PF00005 ABC transporter D9C12_18645 PF17912 MalK OB fold domain D9C12_18645 PF03459 TOBE domain D9C12_18650 PF07702 UTRA domain D9C12_18650 PF00392 Bacterial regulatory proteins, gntR family D9C12_18655 PF00294 pfkB family carbohydrate kinase D9C12_18665 PF00528 Binding-protein-dependent transport system inner membrane component D9C12_18670 PF01547 Bacterial extracellular solute-binding protein D9C12_18675 PF01380 SIS domain D9C12_18680 PF01541 GIY-YIG catalytic domain D9C12_18685 PF01266 FAD dependent oxidoreductase D9C12_18705 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D9C12_18720 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH D9C12_18720 PF04740 LXG domain of WXG superfamily D9C12_18730 PF01471 Putative peptidoglycan binding domain D9C12_18730 PF01476 LysM domain D9C12_18730 PF01510 N-acetylmuramoyl-L-alanine amidase D9C12_18735 PF05105 Bacteriophage holin family D9C12_18770 PF01464 Transglycosylase SLT domain D9C12_18865 PF00589 Phage integrase family D9C12_18875 PF09643 YopX protein D9C12_18905 PF17356 Phage-like element PBSX protein XtrA D9C12_18940 PF01381 Helix-turn-helix D9C12_18945 PF06114 IrrE N-terminal-like domain D9C12_18945 PF01381 Helix-turn-helix D9C12_18945 PF09856 Predicted transcriptional regulator (DUF2083) D9C12_18965 PF01458 Uncharacterized protein family (UPF0051) D9C12_18970 PF01592 NifU-like N terminal domain D9C12_18975 PF00266 Aminotransferase class-V D9C12_18980 PF01458 Uncharacterized protein family (UPF0051) D9C12_18985 PF00005 ABC transporter D9C12_19000 PF02627 Carboxymuconolactone decarboxylase family D9C12_19005 PF03180 NLPA lipoprotein D9C12_19010 PF00528 Binding-protein-dependent transport system inner membrane component D9C12_19015 PF00005 ABC transporter D9C12_19015 PF09383 NIL domain D9C12_19020 PF02036 SCP-2 sterol transfer family D9C12_19025 PF00085 Thioredoxin D9C12_19030 PF01751 Toprim domain D9C12_19035 PF10830 Protein of unknown function (DUF2553) D9C12_19040 PF01597 Glycine cleavage H-protein D9C12_19045 PF03960 ArsC family D9C12_19050 PF02770 Acyl-CoA dehydrogenase, middle domain D9C12_19050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D9C12_19050 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D9C12_19055 PF02803 Thiolase, C-terminal domain D9C12_19055 PF00108 Thiolase, N-terminal domain D9C12_19060 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain D9C12_19060 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain D9C12_19060 PF00378 Enoyl-CoA hydratase/isomerase D9C12_19065 PF14115 YuzL-like protein D9C12_19070 PF01619 Proline dehydrogenase D9C12_19080 PF07875 Coat F domain D9C12_19085 PF01047 MarR family D9C12_19090 PF07690 Major Facilitator Superfamily D9C12_19095 PF14552 Tautomerase enzyme D9C12_19105 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D9C12_19105 PF03466 LysR substrate binding domain D9C12_19110 PF10835 Protein of unknown function (DUF2573) D9C12_19115 PF00005 ABC transporter D9C12_19120 PF14039 YusW-like protein D9C12_19135 PF00005 ABC transporter D9C12_19170 PF00155 Aminotransferase class I and II D9C12_19185 PF00210 Ferritin-like domain D9C12_19195 PF13180 PDZ domain D9C12_19200 PF00486 Transcriptional regulatory protein, C terminal D9C12_19200 PF00072 Response regulator receiver domain D9C12_19205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D9C12_19205 PF00672 HAMP domain D9C12_19205 PF00512 His Kinase A (phospho-acceptor) domain D9C12_19215 PF00440 Bacterial regulatory proteins, tetR family D9C12_19220 PF10415 Fumarase C C-terminus D9C12_19220 PF00206 Lyase D9C12_19225 PF13113 Protein of unknown function (DUF3970) D9C12_19230 PF03323 Bacillus/Clostridium GerA spore germination protein D9C12_19235 PF03845 Spore germination protein D9C12_19240 PF05504 Spore germination B3/ GerAC like, C-terminal D9C12_19245 PF00072 Response regulator receiver domain D9C12_19245 PF00196 Bacterial regulatory proteins, luxR family D9C12_19250 PF07730 Histidine kinase D9C12_19250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D9C12_19250 PF00672 HAMP domain D9C12_19255 PF09922 Cell wall-active antibiotics response 4TMS YvqF D9C12_19260 PF13349 Putative adhesin D9C12_19265 PF04012 PspA/IM30 family D9C12_19275 PF07690 Major Facilitator Superfamily D9C12_19280 PF01923 Cobalamin adenosyltransferase D9C12_19285 PF00005 ABC transporter D9C12_19295 PF01497 Periplasmic binding protein D9C12_19300 PF00106 short chain dehydrogenase D9C12_19305 PF08450 SMP-30/Gluconolactonase/LRE-like region D9C12_19310 PF00512 His Kinase A (phospho-acceptor) domain D9C12_19310 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D9C12_19315 PF00072 Response regulator receiver domain D9C12_19315 PF00486 Transcriptional regulatory protein, C terminal D9C12_19325 PF04545 Sigma-70, region 4 D9C12_19330 PF12841 YvrJ protein family D9C12_19335 PF00190 Cupin D9C12_19340 PF14184 Regulatory protein YrvL D9C12_19345 PF02687 FtsX-like permease family D9C12_19345 PF12704 MacB-like periplasmic core domain D9C12_19350 PF00005 ABC transporter D9C12_19355 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion D9C12_19360 PF00005 ABC transporter D9C12_19370 PF01032 FecCD transport family D9C12_19375 PF01497 Periplasmic binding protein D9C12_19385 PF13520 Amino acid permease D9C12_19395 PF09575 Small spore protein J (Spore_SspJ) D9C12_19400 PF04307 LexA-binding, inner membrane-associated putative hydrolase D9C12_19405 PF00884 Sulfatase D9C12_19410 PF12727 PBP superfamily domain D9C12_19410 PF12728 Helix-turn-helix domain D9C12_19420 PF00528 Binding-protein-dependent transport system inner membrane component D9C12_19425 PF00248 Aldo/keto reductase family D9C12_19435 PF00999 Sodium/hydrogen exchanger family D9C12_19440 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain D9C12_19440 PF01077 Nitrite and sulphite reductase 4Fe-4S domain D9C12_19445 PF00667 FAD binding domain D9C12_19445 PF00175 Oxidoreductase NAD-binding domain D9C12_19445 PF00258 Flavodoxin D9C12_19450 PF13538 UvrD-like helicase C-terminal domain D9C12_19460 PF03458 UPF0126 domain D9C12_19465 PF02600 Disulfide bond formation protein DsbB D9C12_19470 PF13462 Thioredoxin D9C12_19475 PF00403 Heavy-metal-associated domain D9C12_19485 PF00403 Heavy-metal-associated domain D9C12_19490 PF00403 Heavy-metal-associated domain D9C12_19495 PF02583 Metal-sensitive transcriptional repressor D9C12_19500 PF02894 Oxidoreductase family, C-terminal alpha/beta domain D9C12_19500 PF01408 Oxidoreductase family, NAD-binding Rossmann fold D9C12_19515 PF17314 Family of unknown function (DUF5360) D9C12_19520 PF00893 Small Multidrug Resistance protein D9C12_19525 PF00440 Bacterial regulatory proteins, tetR family D9C12_19530 PF00106 short chain dehydrogenase D9C12_19540 PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues D9C12_19540 PF14449 Pre-toxin TG D9C12_19540 PF04740 LXG domain of WXG superfamily D9C12_19555 PF01510 N-acetylmuramoyl-L-alanine amidase D9C12_19555 PF01476 LysM domain D9C12_19555 PF01471 Putative peptidoglycan binding domain D9C12_19560 PF05105 Bacteriophage holin family D9C12_19585 PF05257 CHAP domain D9C12_19585 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase D9C12_19700 PF00589 Phage integrase family D9C12_19715 PF09643 YopX protein D9C12_19750 PF17356 Phage-like element PBSX protein XtrA D9C12_19810 PF01668 SmpB protein D9C12_19815 PF17876 Cold shock domain D9C12_19815 PF08206 Ribonuclease B OB domain D9C12_19815 PF00773 RNB domain D9C12_19815 PF00575 S1 RNA binding domain D9C12_19820 PF12146 Serine aminopeptidase, S33 D9C12_19825 PF03840 Preprotein translocase SecG subunit D9C12_19830 PF00561 alpha/beta hydrolase fold D9C12_19835 PF01381 Helix-turn-helix D9C12_19850 PF01638 HxlR-like helix-turn-helix D9C12_19855 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain D9C12_19855 PF12729 Four helix bundle sensory module for signal transduction D9C12_19855 PF00672 HAMP domain D9C12_19865 PF00528 Binding-protein-dependent transport system inner membrane component D9C12_19870 PF04069 Substrate binding domain of ABC-type glycine betaine transport system D9C12_19875 PF00528 Binding-protein-dependent transport system inner membrane component D9C12_19880 PF00005 ABC transporter D9C12_19880 PF00571 CBS domain D9C12_19885 PF12802 MarR family D9C12_19890 PF00528 Binding-protein-dependent transport system inner membrane component D9C12_19895 PF04069 Substrate binding domain of ABC-type glycine betaine transport system D9C12_19900 PF00528 Binding-protein-dependent transport system inner membrane component D9C12_19905 PF00005 ABC transporter D9C12_19905 PF00571 CBS domain D9C12_19910 PF12802 MarR family D9C12_19915 PF01914 MarC family integral membrane protein D9C12_19920 PF11724 YvbH-like oligomerisation region D9C12_19920 PF08000 Bacterial PH domain D9C12_19930 PF13240 zinc-ribbon domain D9C12_19935 PF00583 Acetyltransferase (GNAT) family D9C12_19940 PF00113 Enolase, C-terminal TIM barrel domain D9C12_19940 PF03952 Enolase, N-terminal domain D9C12_19945 PF06415 BPG-independent PGAM N-terminus (iPGM_N) D9C12_19945 PF01676 Metalloenzyme superfamily D9C12_19950 PF00121 Triosephosphate isomerase D9C12_19955 PF00162 Phosphoglycerate kinase D9C12_19960 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain D9C12_19960 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain D9C12_19965 PF04198 Putative sugar-binding domain D9C12_19975 PF00392 Bacterial regulatory proteins, gntR family D9C12_19980 PF00296 Luciferase-like monooxygenase D9C12_19990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D9C12_19990 PF03466 LysR substrate binding domain D9C12_19995 PF00892 EamA-like transporter family D9C12_20000 PF00324 Amino acid permease D9C12_20010 PF02589 LUD domain D9C12_20015 PF11870 Domain of unknown function (DUF3390) D9C12_20015 PF02589 LUD domain D9C12_20015 PF13183 4Fe-4S dicluster domain D9C12_20020 PF02754 Cysteine-rich domain D9C12_20035 PF00196 Bacterial regulatory proteins, luxR family D9C12_20035 PF00072 Response regulator receiver domain D9C12_20040 PF07730 Histidine kinase D9C12_20040 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D9C12_20050 PF00005 ABC transporter D9C12_20055 PF12697 Alpha/beta hydrolase family D9C12_20060 PF07228 Stage II sporulation protein E (SpoIIE) D9C12_20060 PF13426 PAS domain D9C12_20065 PF07745 Glycosyl hydrolase family 53 D9C12_20070 PF08533 Beta-galactosidase C-terminal domain D9C12_20070 PF08532 Beta-galactosidase trimerisation domain D9C12_20070 PF02449 Beta-galactosidase D9C12_20075 PF00528 Binding-protein-dependent transport system inner membrane component D9C12_20080 PF00528 Binding-protein-dependent transport system inner membrane component D9C12_20085 PF13416 Bacterial extracellular solute-binding protein D9C12_20090 PF00356 Bacterial regulatory proteins, lacI family D9C12_20095 PF00392 Bacterial regulatory proteins, gntR family D9C12_20095 PF07729 FCD domain D9C12_20100 PF02652 L-lactate permease D9C12_20110 PF09628 YvfG protein D9C12_20115 PF04230 Polysaccharide pyruvyl transferase D9C12_20120 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family D9C12_20125 PF00132 Bacterial transferase hexapeptide (six repeats) D9C12_20125 PF17836 PglD N-terminal domain D9C12_20130 PF02397 Bacterial sugar transferase D9C12_20135 PF14667 Polysaccharide biosynthesis C-terminal domain D9C12_20135 PF01943 Polysaccharide biosynthesis protein D9C12_20140 PF00535 Glycosyl transferase family 2 D9C12_20145 PF04230 Polysaccharide pyruvyl transferase D9C12_20150 PF00535 Glycosyl transferase family 2 D9C12_20160 PF13439 Glycosyltransferase Family 4 D9C12_20160 PF00534 Glycosyl transferases group 1 D9C12_20165 PF00535 Glycosyl transferase family 2 D9C12_20170 PF13439 Glycosyltransferase Family 4 D9C12_20170 PF00534 Glycosyl transferases group 1 D9C12_20175 PF02719 Polysaccharide biosynthesis protein D9C12_20180 PF13614 AAA domain D9C12_20185 PF02706 Chain length determinant protein D9C12_20190 PF01381 Helix-turn-helix D9C12_20190 PF08671 Anti-repressor SinI D9C12_20195 PF00135 Carboxylesterase family D9C12_20205 PF05870 Phenolic acid decarboxylase (PAD) D9C12_20230 PF02435 Levansucrase/Invertase D9C12_20235 PF08244 Glycosyl hydrolases family 32 C terminal D9C12_20235 PF00251 Glycosyl hydrolases family 32 N-terminal domain D9C12_20240 PF13520 Amino acid permease D9C12_20245 PF17934 Tetracyclin repressor-like, C-terminal domain D9C12_20245 PF00440 Bacterial regulatory proteins, tetR family D9C12_20250 PF00893 Small Multidrug Resistance protein D9C12_20255 PF00893 Small Multidrug Resistance protein D9C12_20270 PF00574 Clp protease D9C12_20275 PF13419 Haloacid dehalogenase-like hydrolase D9C12_20280 PF16657 Maltogenic Amylase, C-terminal domain D9C12_20280 PF00128 Alpha amylase, catalytic domain D9C12_20285 PF03633 Glycosyl hydrolase family 65, C-terminal domain D9C12_20285 PF03636 Glycosyl hydrolase family 65, N-terminal domain D9C12_20285 PF03632 Glycosyl hydrolase family 65 central catalytic domain D9C12_20290 PF06691 Protein of unknown function (DUF1189) D9C12_20295 PF00528 Binding-protein-dependent transport system inner membrane component D9C12_20300 PF00528 Binding-protein-dependent transport system inner membrane component D9C12_20305 PF13416 Bacterial extracellular solute-binding protein D9C12_20310 PF00128 Alpha amylase, catalytic domain D9C12_20310 PF02903 Alpha amylase, N-terminal ig-like domain D9C12_20315 PF00356 Bacterial regulatory proteins, lacI family D9C12_20320 PF03641 Possible lysine decarboxylase D9C12_20325 PF03819 MazG nucleotide pyrophosphohydrolase domain D9C12_20330 PF01740 STAS domain D9C12_20330 PF00916 Sulfate permease family D9C12_20335 PF00484 Carbonic anhydrase D9C12_20340 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain D9C12_20340 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain D9C12_20345 PF02687 FtsX-like permease family D9C12_20350 PF00005 ABC transporter D9C12_20355 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D9C12_20360 PF00072 Response regulator receiver domain D9C12_20360 PF00486 Transcriptional regulatory protein, C terminal D9C12_20370 PF00797 N-acetyltransferase D9C12_20375 PF00381 PTS HPr component phosphorylation site D9C12_20380 PF10298 WhiA N-terminal LAGLIDADG-like domain D9C12_20380 PF14527 WhiA LAGLIDADG-like domain D9C12_20380 PF02650 WhiA C-terminal HTH domain D9C12_20385 PF01933 Uncharacterised protein family UPF0052 D9C12_20390 PF03668 P-loop ATPase protein family D9C12_20395 PF00293 NUDIX domain D9C12_20400 PF07992 Pyridine nucleotide-disulphide oxidoreductase D9C12_20405 PF00877 NlpC/P60 family D9C12_20415 PF00005 ABC transporter D9C12_20415 PF00664 ABC transporter transmembrane region D9C12_20435 PF01502 Phosphoribosyl-AMP cyclohydrolase D9C12_20435 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase D9C12_20440 PF00977 Histidine biosynthesis protein D9C12_20445 PF00977 Histidine biosynthesis protein D9C12_20450 PF00117 Glutamine amidotransferase class-I D9C12_20455 PF00475 Imidazoleglycerol-phosphate dehydratase D9C12_20460 PF00815 Histidinol dehydrogenase D9C12_20465 PF01634 ATP phosphoribosyltransferase D9C12_20470 PF13393 Histidyl-tRNA synthetase D9C12_20475 PF13529 Peptidase_C39 like family D9C12_20480 PF03211 Pectate lyase D9C12_20490 PF14602 Hexapeptide repeat of succinyl-transferase D9C12_20495 PF13419 Haloacid dehalogenase-like hydrolase D9C12_20500 PF07670 Nucleoside recognition D9C12_20505 PF01790 Prolipoprotein diacylglyceryl transferase D9C12_20510 PF02603 HPr Serine kinase N terminus D9C12_20510 PF07475 HPr Serine kinase C-terminal domain D9C12_20515 PF01979 Amidohydrolase family D9C12_20520 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase D9C12_20530 PF00149 Calcineurin-like phosphoesterase D9C12_20545 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV D9C12_20550 PF04024 PspC domain D9C12_20555 PF13349 Putative adhesin D9C12_20570 PF00700 Bacterial flagellin C-terminal helical region D9C12_20570 PF00669 Bacterial flagellin N-terminal helical region D9C12_20575 PF17755 UvrA DNA-binding domain D9C12_20575 PF00005 ABC transporter D9C12_20575 PF17760 UvrA interaction domain D9C12_20580 PF04851 Type III restriction enzyme, res subunit D9C12_20580 PF00271 Helicase conserved C-terminal domain D9C12_20580 PF02151 UvrB/uvrC motif D9C12_20580 PF12344 Ultra-violet resistance protein B D9C12_20580 PF17757 UvrB interaction domain D9C12_20585 PF09964 Uncharacterized protein conserved in bacteria (DUF2198) D9C12_20590 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain D9C12_20590 PF00391 PEP-utilising enzyme, mobile domain D9C12_20595 PF00440 Bacterial regulatory proteins, tetR family D9C12_20600 PF07690 Major Facilitator Superfamily D9C12_20605 PF17820 PDZ domain D9C12_20610 PF17423 Swarming motility protein D9C12_20615 PF03572 Peptidase family S41 D9C12_20615 PF01471 Putative peptidoglycan binding domain D9C12_20615 PF17820 PDZ domain D9C12_20620 PF18075 FtsX extracellular domain D9C12_20620 PF02687 FtsX-like permease family D9C12_20625 PF00005 ABC transporter D9C12_20630 PF13442 Cytochrome C oxidase, cbb3-type, subunit III D9C12_20635 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) D9C12_20635 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 D9C12_20645 PF07517 SecA DEAD-like domain D9C12_20645 PF01043 SecA preprotein cross-linking domain D9C12_20645 PF07516 SecA Wing and Scaffold domain D9C12_20645 PF02810 SEC-C motif D9C12_20655 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus D9C12_20655 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein D9C12_20670 PF02561 Flagellar protein FliS D9C12_20675 PF07195 Flagellar hook-associated protein 2 C-terminus D9C12_20675 PF02465 Flagellar hook-associated protein 2 N-terminus D9C12_20675 PF07196 Flagellin hook IN motif D9C12_20680 PF03646 FlaG protein D9C12_20685 PF00669 Bacterial flagellin N-terminal helical region D9C12_20685 PF00700 Bacterial flagellin C-terminal helical region D9C12_20690 PF02599 Global regulator protein family D9C12_20695 PF02623 FliW protein D9C12_20705 PF00700 Bacterial flagellin C-terminal helical region D9C12_20705 PF00669 Bacterial flagellin N-terminal helical region D9C12_20710 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D9C12_20710 PF00460 Flagella basal body rod protein D9C12_20715 PF05130 FlgN protein D9C12_20720 PF04316 Anti-sigma-28 factor, FlgM D9C12_20735 PF10719 Late competence development protein ComFB D9C12_20740 PF00271 Helicase conserved C-terminal domain D9C12_20740 PF04851 Type III restriction enzyme, res subunit D9C12_20745 PF02645 Uncharacterised protein, DegV family COG1307 D9C12_20750 PF00196 Bacterial regulatory proteins, luxR family D9C12_20750 PF00072 Response regulator receiver domain D9C12_20755 PF07730 Histidine kinase D9C12_20755 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D9C12_20755 PF05384 Sensor protein DegS D9C12_20760 PF09186 Domain of unknown function (DUF1949) D9C12_20760 PF01205 Uncharacterized protein family UPF0029 D9C12_20765 PF03816 Cell envelope-related transcriptional attenuator domain D9C12_20800 PF00005 ABC transporter D9C12_20810 PF00953 Glycosyl transferase family 4 D9C12_20820 PF00535 Glycosyl transferase family 2 D9C12_20825 PF02706 Chain length determinant protein D9C12_20830 PF04932 O-Antigen ligase D9C12_20840 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain D9C12_20840 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain D9C12_20840 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain D9C12_20845 PF13439 Glycosyltransferase Family 4 D9C12_20845 PF00534 Glycosyl transferases group 1 D9C12_20850 PF14667 Polysaccharide biosynthesis C-terminal domain D9C12_20850 PF01943 Polysaccharide biosynthesis protein D9C12_20855 PF02397 Bacterial sugar transferase D9C12_20865 PF02350 UDP-N-acetylglucosamine 2-epimerase D9C12_20870 PF00483 Nucleotidyl transferase D9C12_20880 PF00005 ABC transporter D9C12_20885 PF01061 ABC-2 type transporter D9C12_20900 PF00535 Glycosyl transferase family 2 D9C12_20900 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase D9C12_20905 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase D9C12_20910 PF01467 Cytidylyltransferase-like D9C12_20915 PF03808 Glycosyl transferase WecB/TagA/CpsF family D9C12_20920 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase D9C12_20925 PF05036 Sporulation related domain D9C12_20925 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase D9C12_20925 PF08239 Bacterial SH3 domain D9C12_20930 PF01238 Phosphomannose isomerase type I D9C12_20945 PF05504 Spore germination B3/ GerAC like, C-terminal D9C12_20955 PF03816 Cell envelope-related transcriptional attenuator domain D9C12_20965 PF00877 NlpC/P60 family D9C12_20980 PF09587 Bacterial capsule synthesis protein PGA_cap D9C12_20985 PF14102 Capsule biosynthesis CapC D9C12_20990 PF08245 Mur ligase middle domain D9C12_21000 PF01609 Transposase DDE domain D9C12_21010 PF00294 pfkB family carbohydrate kinase D9C12_21015 PF05025 RbsD / FucU transport protein family D9C12_21020 PF00005 ABC transporter D9C12_21025 PF02653 Branched-chain amino acid transport system / permease component D9C12_21030 PF13407 Periplasmic binding protein domain D9C12_21035 PF08239 Bacterial SH3 domain D9C12_21040 PF13031 Protein of unknown function (DUF3892) D9C12_21045 PF02525 Flavodoxin-like fold D9C12_21050 PF03306 Alpha-acetolactate decarboxylase D9C12_21055 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain D9C12_21055 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain D9C12_21055 PF00205 Thiamine pyrophosphate enzyme, central domain D9C12_21060 PF03466 LysR substrate binding domain D9C12_21060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D9C12_21080 PF08757 CotH kinase protein D9C12_21090 PF01613 Flavin reductase like domain D9C12_21095 PF13789 Domain of unknown function (DUF4181) D9C12_21105 PF01037 Lrp/AsnC ligand binding domain D9C12_21105 PF13404 AsnC-type helix-turn-helix domain D9C12_21110 PF02417 Chromate transporter D9C12_21115 PF02417 Chromate transporter D9C12_21125 PF03358 NADPH-dependent FMN reductase D9C12_21130 PF03466 LysR substrate binding domain D9C12_21130 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D9C12_21160 PF14431 YwqJ-like deaminase D9C12_21160 PF04740 LXG domain of WXG superfamily D9C12_21160 PF14449 Pre-toxin TG D9C12_21170 PF16888 Domain of unknown function (DUF5082) D9C12_21180 PF09234 Domain of unknown function (DUF1963) D9C12_21185 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain D9C12_21185 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain D9C12_21185 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain D9C12_21195 PF13614 AAA domain D9C12_21200 PF02706 Chain length determinant protein D9C12_21200 PF13807 G-rich domain on putative tyrosine kinase D9C12_21210 PF04434 SWIM zinc finger D9C12_21215 PF00176 SNF2 family N-terminal domain D9C12_21215 PF12419 SNF2 Helicase protein D9C12_21215 PF00271 Helicase conserved C-terminal domain D9C12_21230 PF00455 DeoR C terminal sensor domain D9C12_21230 PF08220 DeoR-like helix-turn-helix domain D9C12_21235 PF00436 Single-strand binding protein family D9C12_21245 PF14183 YwpF-like protein D9C12_21250 PF04203 Sortase domain D9C12_21255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase D9C12_21255 PF06580 Histidine kinase D9C12_21260 PF01741 Large-conductance mechanosensitive channel, MscL D9C12_21265 PF07977 FabA-like domain D9C12_21270 PF18801 response regulator aspartate phosphatase H, N terminal D9C12_21275 PF00460 Flagella basal body rod protein D9C12_21275 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D9C12_21280 PF00460 Flagella basal body rod protein D9C12_21280 PF06429 Flagellar basal body rod FlgEFG protein C-terminal D9C12_21290 PF12116 Stage III sporulation protein D D9C12_21300 PF01047 MarR family D9C12_21305 PF07690 Major Facilitator Superfamily D9C12_21310 PF13229 Right handed beta helix region D9C12_21315 PF02133 Permease for cytosine/purines, uracil, thiamine, allantoin D9C12_21320 PF07690 Major Facilitator Superfamily D9C12_21325 PF00857 Isochorismatase family D9C12_21335 PF00909 Ammonium Transporter Family D9C12_21340 PF00543 Nitrogen regulatory protein P-II D9C12_21345 PF01569 PAP2 superfamily D9C12_21350 PF04892 VanZ like family D9C12_21355 PF01551 Peptidase family M23 D9C12_21360 PF00583 Acetyltransferase (GNAT) family D9C12_21365 PF17319 Family of unknown function (DUF5362) D9C12_21370 PF03102 NeuB family D9C12_21370 PF08666 SAF domain D9C12_21375 PF17370 Family of unknown function (DUF5392) D9C12_21380 PF13396 Phospholipase_D-nuclease N-terminal D9C12_21380 PF13091 PLD-like domain D9C12_21385 PF07739 TipAS antibiotic-recognition domain D9C12_21385 PF13411 MerR HTH family regulatory protein D9C12_21390 PF17319 Family of unknown function (DUF5362) D9C12_21400 PF02082 Transcriptional regulator D9C12_21405 PF00449 Urease alpha-subunit, N-terminal domain D9C12_21405 PF01979 Amidohydrolase family D9C12_21410 PF00699 Urease beta subunit D9C12_21415 PF00547 Urease, gamma subunit D9C12_21430 PF05532 CsbD-like D9C12_21440 PF18801 response regulator aspartate phosphatase H, N terminal D9C12_21440 PF17874 MalT-like TPR region D9C12_21450 PF06463 Molybdenum Cofactor Synthesis C D9C12_21450 PF04055 Radical SAM superfamily D9C12_21455 PF02634 FdhD/NarQ family D9C12_21465 PF00092 von Willebrand factor type A domain D9C12_21475 PF00092 von Willebrand factor type A domain D9C12_21480 PF08486 Stage II sporulation protein D9C12_21485 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) D9C12_21490 PF08680 TATA-box binding D9C12_21495 PF06612 Protein of unknown function (DUF1146) D9C12_21505 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain D9C12_21505 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain D9C12_21510 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D9C12_21510 PF02874 ATP synthase alpha/beta family, beta-barrel domain D9C12_21515 PF00231 ATP synthase D9C12_21520 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D9C12_21520 PF00306 ATP synthase alpha/beta chain, C terminal domain D9C12_21520 PF02874 ATP synthase alpha/beta family, beta-barrel domain D9C12_21525 PF00213 ATP synthase delta (OSCP) subunit D9C12_21530 PF00430 ATP synthase B/B' CF(0) D9C12_21535 PF00137 ATP synthase subunit C D9C12_21540 PF00119 ATP synthase A chain D9C12_21545 PF03899 ATP synthase I chain D9C12_21555 PF00464 Serine hydroxymethyltransferase D9C12_21560 PF04260 Protein of unknown function (DUF436) D9C12_21565 PF02502 Ribose/Galactose Isomerase D9C12_21570 PF01451 Low molecular weight phosphotyrosine protein phosphatase D9C12_21575 PF02659 Putative manganese efflux pump D9C12_21580 PF01300 Telomere recombination D9C12_21580 PF03481 Putative GTP-binding controlling metal-binding D9C12_21590 PF09551 Stage II sporulation protein R (spore_II_R) D9C12_21595 PF17094 Uncharacterised protein family (UPF0715) D9C12_21600 PF17247 Family of unknown function (DUF5316) D9C12_21605 PF05175 Methyltransferase small domain D9C12_21605 PF17827 PrmC N-terminal domain D9C12_21610 PF03462 PCRF domain D9C12_21610 PF00472 RF-1 domain D9C12_21615 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D9C12_21620 PF13411 MerR HTH family regulatory protein D9C12_21625 PF03547 Membrane transport protein D9C12_21630 PF03949 Malic enzyme, NAD binding domain D9C12_21630 PF00390 Malic enzyme, N-terminal domain D9C12_21635 PF00265 Thymidine kinase D9C12_21640 PF01197 Ribosomal protein L31 D9C12_21645 PF07498 Rho termination factor, N-terminal domain D9C12_21645 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain D9C12_21645 PF07497 Rho termination factor, RNA-binding domain D9C12_21655 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded D9C12_21665 PF00923 Transaldolase/Fructose-6-phosphate aldolase D9C12_21670 PF01116 Fructose-bisphosphate aldolase class-II D9C12_21675 PF00072 Response regulator receiver domain D9C12_21680 PF10740 Domain of unknown function (DUF2529) D9C12_21690 PF00117 Glutamine amidotransferase class-I D9C12_21690 PF06418 CTP synthase N-terminus D9C12_21695 PF05066 HB1, ASXL, restriction endonuclease HTH domain D9C12_21700 PF02771 Acyl-CoA dehydrogenase, N-terminal domain D9C12_21700 PF02770 Acyl-CoA dehydrogenase, middle domain D9C12_21700 PF00441 Acyl-CoA dehydrogenase, C-terminal domain D9C12_21705 PF02754 Cysteine-rich domain D9C12_21705 PF13183 4Fe-4S dicluster domain D9C12_21710 PF13091 PLD-like domain D9C12_21715 PF03851 UV-endonuclease UvdE D9C12_21730 PF03485 Arginyl tRNA synthetase N terminal domain D9C12_21730 PF00750 tRNA synthetases class I (R) D9C12_21730 PF05746 DALR anticodon binding domain D9C12_21735 PF09148 Domain of unknown function (DUF1934) D9C12_21740 PF11420 Bacteriocin subtilosin A D9C12_21750 PF05402 Coenzyme PQQ synthesis protein D (PqqD) D9C12_21750 PF04055 Radical SAM superfamily D9C12_21750 PF13186 Iron-sulfur cluster-binding domain D9C12_21760 PF00005 ABC transporter D9C12_21770 PF05193 Peptidase M16 inactive domain D9C12_21775 PF00675 Insulinase (Peptidase family M16) D9C12_21800 PF18801 response regulator aspartate phosphatase H, N terminal D9C12_21805 PF11131 Rap-phr extracellular signalling D9C12_21815 PF00491 Arginase family D9C12_21820 PF17284 Spermidine synthase tetramerisation domain D9C12_21825 PF00912 Transglycosylase D9C12_21825 PF00905 Penicillin binding protein transpeptidase domain D9C12_21835 PF08741 YwhD family D9C12_21840 PF02163 Peptidase family M50 D9C12_21845 PF01361 Tautomerase enzyme D9C12_21850 PF01047 MarR family D9C12_21855 PF03129 Anticodon binding domain D9C12_21855 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) D9C12_21855 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain D9C12_21855 PF02824 TGS domain D9C12_21865 PF07690 Major Facilitator Superfamily D9C12_21870 PF02082 Transcriptional regulator D9C12_21880 PF01966 HD domain D9C12_21885 PF07293 Protein of unknown function (DUF1450) D9C12_21895 PF00892 EamA-like transporter family D9C12_21900 PF03099 Biotin/lipoate A/B protein ligase family D9C12_21905 PF03466 LysR substrate binding domain D9C12_21905 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D9C12_21910 PF01515 Phosphate acetyl/butaryl transferase D9C12_21925 PF00155 Aminotransferase class I and II D9C12_21930 PF07690 Major Facilitator Superfamily D9C12_21945 PF07883 Cupin domain D9C12_21960 PF07690 Major Facilitator Superfamily D9C12_21965 PF00324 Amino acid permease D9C12_21970 PF01546 Peptidase family M20/M25/M40 D9C12_21975 PF00171 Aldehyde dehydrogenase family D9C12_21980 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase D9C12_21980 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain D9C12_21985 PF17735 Biofilm surface layer A D9C12_21990 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase D9C12_21995 PF04321 RmlD substrate binding domain D9C12_22000 PF16363 GDP-mannose 4,6 dehydratase D9C12_22005 PF00483 Nucleotidyl transferase D9C12_22010 PF04101 Glycosyltransferase family 28 C-terminal domain D9C12_22015 PF02348 Cytidylyltransferase D9C12_22020 PF08666 SAF domain D9C12_22020 PF03102 NeuB family D9C12_22025 PF00583 Acetyltransferase (GNAT) family D9C12_22030 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family D9C12_22035 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase D9C12_22040 PF00535 Glycosyl transferase family 2 D9C12_22050 PF09671 Spore coat protein (Spore_GerQ) D9C12_22055 PF04241 Protein of unknown function (DUF423) D9C12_22060 PF00860 Permease family D9C12_22065 PF17261 Family of unknown function (DUF5327) D9C12_22070 PF00171 Aldehyde dehydrogenase family D9C12_22075 PF03167 Uracil DNA glycosylase superfamily D9C12_22080 PF00535 Glycosyl transferase family 2 D9C12_22085 PF08543 Phosphomethylpyrimidine kinase D9C12_22105 PF00251 Glycosyl hydrolases family 32 N-terminal domain D9C12_22105 PF08244 Glycosyl hydrolases family 32 C terminal D9C12_22110 PF00367 phosphotransferase system, EIIB D9C12_22110 PF02378 Phosphotransferase system, EIIC D9C12_22115 PF01226 Formate/nitrite transporter D9C12_22120 PF00874 PRD domain D9C12_22120 PF03123 CAT RNA binding domain D9C12_22130 PF00082 Subtilase family D9C12_22130 PF02225 PA domain D9C12_22130 PF13860 FlgD Ig-like domain D9C12_22130 PF05922 Peptidase inhibitor I9 D9C12_22135 PF00296 Luciferase-like monooxygenase D9C12_22140 PF00881 Nitroreductase family D9C12_22145 PF01098 Cell cycle protein D9C12_22155 PF17368 Spore morphogenesis and germination YwcE D9C12_22160 PF03626 Prokaryotic Cytochrome C oxidase subunit IV D9C12_22165 PF00510 Cytochrome c oxidase subunit III D9C12_22170 PF00115 Cytochrome C and Quinol oxidase polypeptide I D9C12_22175 PF02790 Cytochrome C oxidase subunit II, transmembrane domain D9C12_22175 PF00116 Cytochrome C oxidase subunit II, periplasmic domain D9C12_22180 PF04226 Transglycosylase associated protein D9C12_22185 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain D9C12_22185 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain D9C12_22190 PF00288 GHMP kinases N terminal domain D9C12_22190 PF08544 GHMP kinases C terminal D9C12_22190 PF10509 Galactokinase galactose-binding signature D9C12_22195 PF04138 GtrA-like protein D9C12_22200 PF00440 Bacterial regulatory proteins, tetR family D9C12_22205 PF08671 Anti-repressor SinI D9C12_22210 PF04341 Protein of unknown function, DUF485 D9C12_22215 PF00474 Sodium:solute symporter family D9C12_22220 PF01323 DSBA-like thioredoxin domain D9C12_22225 PF04261 Dyp-type peroxidase family D9C12_22225 PF10518 TAT (twin-arginine translocation) pathway signal sequence D9C12_22230 PF09375 Imelysin D9C12_22235 PF03239 Iron permease FTR1 family D9C12_22240 PF02581 Thiamine monophosphate synthase D9C12_22245 PF02110 Hydroxyethylthiazole kinase family D9C12_22250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family D9C12_22250 PF03466 LysR substrate binding domain D9C12_22255 PF03788 LrgA family D9C12_22260 PF04172 LrgB-like family D9C12_22265 PF12832 MFS_1 like family D9C12_22270 PF09962 Uncharacterized conserved protein (DUF2196) D9C12_22275 PF17785 PUA-like domain D9C12_22275 PF10672 S-adenosylmethionine-dependent methyltransferase D9C12_22280 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily D9C12_22290 PF10924 Protein of unknown function (DUF2711) D9C12_22295 PF02378 Phosphotransferase system, EIIC D9C12_22305 PF00367 phosphotransferase system, EIIB D9C12_22305 PF02378 Phosphotransferase system, EIIC D9C12_22310 PF03123 CAT RNA binding domain D9C12_22310 PF00874 PRD domain D9C12_22315 PF01501 Glycosyl transferase family 8 D9C12_22320 PF09529 Integral membrane protein (intg_mem_TP0381) D9C12_22325 PF01047 MarR family D9C12_22330 PF00579 tRNA synthetases class I (W and Y) D9C12_22330 PF01479 S4 domain D9C12_22335 PF02225 PA domain D9C12_22335 PF04389 Peptidase family M28 D9C12_22345 PF04607 Region found in RelA / SpoT proteins D9C12_22355 PF01040 UbiA prenyltransferase family D9C12_22370 PF12459 D-Ala-teichoic acid biosynthesis protein D9C12_22375 PF13193 AMP-binding enzyme C-terminal domain D9C12_22375 PF00501 AMP-binding enzyme D9C12_22380 PF03062 MBOAT, membrane-bound O-acyltransferase family D9C12_22385 PF00550 Phosphopantetheine attachment site D9C12_22390 PF04914 DltD protein D9C12_22400 PF01063 Amino-transferase class IV D9C12_22405 PF02056 Family 4 glycosyl hydrolase D9C12_22405 PF11975 Family 4 glycosyl hydrolase C-terminal domain D9C12_22410 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit D9C12_22415 PF02378 Phosphotransferase system, EIIC D9C12_22420 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit D9C12_22425 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 D9C12_22425 PF00874 PRD domain D9C12_22425 PF05043 Mga helix-turn-helix domain D9C12_22425 PF08279 HTH domain D9C12_22435 PF02245 Methylpurine-DNA glycosylase (MPG) D9C12_22440 PF06628 Catalase-related immune-responsive D9C12_22440 PF00199 Catalase D9C12_22445 PF07690 Major Facilitator Superfamily D9C12_22490 PF04545 Sigma-70, region 4 D9C12_22495 PF12841 YvrJ protein family D9C12_22555 PF00872 Transposase, Mutator family D9C12_22605 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin D9C12_22605 PF18277 AbrB C-terminal domain D9C12_22625 PF17854 FtsK alpha domain D9C12_22625 PF01580 FtsK/SpoIIIE family D9C12_22625 PF09397 Ftsk gamma domain D9C12_22685 PF00872 Transposase, Mutator family D9C12_22720 PF14040 Deoxyribonuclease NucA/NucB D9C12_22745 PF18801 response regulator aspartate phosphatase H, N terminal D9C12_22755 PF12826 Helix-hairpin-helix motif D9C12_22755 PF04002 RadC-like JAB domain D9C12_22800 PF04650 YSIRK type signal peptide D9C12_22800 PF10425 C-terminus of bacterial fibrinogen-binding adhesin D9C12_22800 PF17961 Bacterial Ig domain D9C12_22800 PF00746 LPXTG cell wall anchor motif D9C12_22800 PF17210 SdrD B-like domain D9C12_22805 PF04203 Sortase domain D9C12_22860 PF06207 Protein of unknown function (DUF1002) D9C12_22955 PF00437 Type II/IV secretion system protein D9C12_23020 PF02810 SEC-C motif D9C12_23020 PF07517 SecA DEAD-like domain D9C12_23020 PF01043 SecA preprotein cross-linking domain D9C12_23020 PF07516 SecA Wing and Scaffold domain D9C12_23140 PF18801 response regulator aspartate phosphatase H, N terminal D9C12_23150 PF13018 Extended Signal Peptide of Type V secretion system D9C12_23150 PF02661 Fic/DOC family D9C12_23150 PF03543 Yersinia/Haemophilus virulence surface antigen D9C12_23150 PF13332 Hemagglutinin repeat D9C12_23150 PF05860 haemagglutination activity domain D9C12_23205 PF12704 MacB-like periplasmic core domain D9C12_23205 PF02687 FtsX-like permease family D9C12_23205 PF00005 ABC transporter D9C12_23255 PF18801 response regulator aspartate phosphatase H, N terminal D9C12_23255 PF17874 MalT-like TPR region D9C12_23270 PF01076 Plasmid recombination enzyme D9C12_23305 PF01446 Replication protein D9C12_23315 PF18801 response regulator aspartate phosphatase H, N terminal D9C12_23315 PF13181 Tetratricopeptide repeat