I33_0001 SM00382 ATPases associated with a variety of cellular activities I33_0001 SM00760 Bacterial dnaA protein helix-turn-helix domain I33_0002 SM00480 DNA polymerase III beta subunit I33_0006 SM00387 Histidine kinase-like ATPases I33_0006 SM00433 TopoisomeraseII I33_0007 SM00434 DNA Topoisomerase IV I33_0014 SM00116 Domain in cystathionine beta-synthase and other proteins. I33_0014 SM01240 I33_0014 I33_0015 SM00936 Penicillin-binding protein 5, C-terminal domain I33_0025 SM00382 ATPases associated with a variety of cellular activities I33_0027 SM00493 I33_0027 I33_0046 SM00465 GIY-YIG type nucleases (URI domain) I33_0048 SM00966 SpoVT / AbrB like domain I33_0051 SM01208 I33_0051 I33_0052 SM00493 I33_0052 I33_0053 SM00650 Ribosomal RNA adenine dimethylases I33_0063 SM01400 I33_0063 I33_0067 SM00982 I33_0067 I33_0068 SM00966 SpoVT / AbrB like domain I33_0071 SM00363 S4 RNA-binding domain I33_0075 SM00316 Ribosomal protein S1-like RNA-binding domain I33_0080 SM00220 Serine/Threonine protein kinases, catalytic domain I33_0081 SM00977 TilS substrate C-terminal domain I33_0083 SM00382 ATPases associated with a variety of cellular activities I33_0092 SM00905 Dihydroneopterin aldolase I33_0094 SM00530 Helix-turn-helix XRE-family like proteins I33_0116 SM00382 ATPases associated with a variety of cellular activities I33_0116 SM01086 C-terminal, D2-small domain, of ClpB protein I33_0117 SM00382 ATPases associated with a variety of cellular activities I33_0119 SM00670 Large family of predicted nucleotide-binding domains I33_0125 SM00840 I33_0125 I33_0126 SM00535 Ribonuclease III family I33_0127 SM00967 RNA 2'-O ribose methyltransferase substrate binding I33_0131 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. I33_0131 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. I33_0132 SM00649 Ribosomal protein L11/L12 I33_0138 SM00663 RNA polymerase I subunit A N-terminus I33_0142 SM00838 Elongation factor G C-terminus I33_0142 SM00889 Elongation factor G, domain IV I33_0145 SM01403 I33_0145 I33_0149 SM01382 I33_0149 I33_0149 SM01383 I33_0149 I33_0151 SM00322 K homology RNA-binding domain I33_0155 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. I33_0171 SM00662 RNA polymerases D I33_0173 SM00382 ATPases associated with a variety of cellular activities I33_0174 SM00382 ATPases associated with a variety of cellular activities I33_0181 SM00646 I33_0181 I33_0184 SM01251 I33_0184 I33_0209 SM00342 helix_turn_helix, arabinose operon control protein I33_0235 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor I33_0254 SM00347 helix_turn_helix multiple antibiotic resistance protein I33_0261 SM00342 helix_turn_helix, arabinose operon control protein I33_0271 SM00450 Rhodanese Homology Domain I33_0275 SM00345 helix_turn_helix gluconate operon transcriptional repressor I33_0275 SM00866 I33_0275 I33_0285 SM00448 cheY-homologous receiver domain I33_0286 SM01130 I33_0286 I33_0289 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain I33_0290 SM00345 helix_turn_helix gluconate operon transcriptional repressor I33_0290 SM00895 I33_0290 I33_0291 SM00858 I33_0291 I33_0301 SM00327 von Willebrand factor (vWF) type A domain I33_0310 SM00870 I33_0310 I33_0314 SM00387 Histidine kinase-like ATPases I33_0315 SM00448 cheY-homologous receiver domain I33_0315 SM00850 LytTr DNA-binding domain I33_0316 SM00382 ATPases associated with a variety of cellular activities I33_0323 SM00028 Tetratricopeptide repeats I33_0325 SM00642 Alpha-amylase domain I33_0327 SM00382 ATPases associated with a variety of cellular activities I33_0338 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor I33_0339 SM00116 Domain in cystathionine beta-synthase and other proteins. I33_0339 SM00382 ATPases associated with a variety of cellular activities I33_0348 SM00632 I33_0348 I33_0348 SM00642 Alpha-amylase domain I33_0352 SM00347 helix_turn_helix multiple antibiotic resistance protein I33_0376 SM00926 Molybdopterin oxidoreductase Fe4S4 domain I33_0383 SM00833 Cobalamin synthesis protein cobW C-terminal domain I33_0385 SM00062 Bacterial periplasmic substrate-binding proteins I33_0389 SM00347 helix_turn_helix multiple antibiotic resistance protein I33_0391 SM00382 ATPases associated with a variety of cellular activities I33_0395 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). I33_0395 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain I33_0397 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family I33_0402 SM00823 Phosphopantetheine attachment site I33_0402 SM01294 I33_0402 I33_0403 SM00823 Phosphopantetheine attachment site I33_0408 SM00345 helix_turn_helix gluconate operon transcriptional repressor I33_0411 SM00382 ATPases associated with a variety of cellular activities I33_0413 SM00062 Bacterial periplasmic substrate-binding proteins I33_0421 SM00710 Parallel beta-helix repeats I33_0421 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses I33_0426 SM00382 ATPases associated with a variety of cellular activities I33_0428 SM00448 cheY-homologous receiver domain I33_0428 SM00862 Transcriptional regulatory protein, C terminal I33_0429 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain I33_0429 SM00387 Histidine kinase-like ATPases I33_0429 SM00388 His Kinase A (phosphoacceptor) domain I33_0430 SM00028 Tetratricopeptide repeats I33_0438 SM00382 ATPases associated with a variety of cellular activities I33_0445 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor I33_0446 SM00345 helix_turn_helix gluconate operon transcriptional repressor I33_0453 SM00420 helix_turn_helix, Deoxyribose operon repressor I33_0461 SM01329 I33_0461 I33_0469 SM00796 Allophanate hydrolase subunit 1 I33_0470 SM00797 Allophanate hydrolase subunit 2 I33_0471 SM00346 helix_turn_helix isocitrate lyase regulation I33_0488 SM00344 helix_turn_helix ASNC type I33_0489 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain I33_0489 SM00437 Bacterial DNA topoisomerase I DNA-binding domain I33_0489 SM00493 I33_0489 I33_0491 SM00267 diguanylate cyclase I33_0509 SM00091 PAS domain I33_0509 SM00387 Histidine kinase-like ATPases I33_0510 SM00448 cheY-homologous receiver domain I33_0514 SM00382 ATPases associated with a variety of cellular activities I33_0524 SM00487 DEAD-like helicases superfamily I33_0524 SM00490 helicase superfamily c-terminal domain I33_0530 SM01005 Alanine racemase, C-terminal domain I33_0535 SM00387 Histidine kinase-like ATPases I33_0536 SM00331 Sigma factor PP2C-like phosphatases I33_0540 SM00331 Sigma factor PP2C-like phosphatases I33_0540 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain I33_0544 SM00347 helix_turn_helix multiple antibiotic resistance protein I33_0545 SM00316 Ribosomal protein S1-like RNA-binding domain I33_0545 SM00732 Likely ribonuclease with RNase H fold. I33_0547 SM00731 SprT homologues. I33_0561 SM00860 SMI1 / KNR4 family I33_0566 SM00530 Helix-turn-helix XRE-family like proteins I33_0568 SM00357 Cold shock protein domain I33_0569 SM01058 CarD-like/TRCF domain I33_0570 SM00345 helix_turn_helix gluconate operon transcriptional repressor I33_0570 SM00895 I33_0570 I33_0573 SM00342 helix_turn_helix, arabinose operon control protein I33_0575 SM00342 helix_turn_helix, arabinose operon control protein I33_0575 SM00871 Bacterial transcription activator, effector binding domain I33_0583 SM00448 cheY-homologous receiver domain I33_0588 SM00849 Metallo-beta-lactamase superfamily I33_0589 SM00344 helix_turn_helix ASNC type I33_0592 SM00345 helix_turn_helix gluconate operon transcriptional repressor I33_0597 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor I33_0599 SM00226 Low molecular weight phosphatase family I33_0604 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain I33_0604 SM00387 Histidine kinase-like ATPases I33_0604 SM00388 His Kinase A (phosphoacceptor) domain I33_0605 SM00448 cheY-homologous receiver domain I33_0605 SM00862 Transcriptional regulatory protein, C terminal I33_0607 SM00345 helix_turn_helix gluconate operon transcriptional repressor I33_0610 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor I33_0614 SM00387 Histidine kinase-like ATPases I33_0615 SM00421 helix_turn_helix, Lux Regulon I33_0615 SM00448 cheY-homologous receiver domain I33_0618 SM00422 helix_turn_helix, mercury resistance I33_0618 SM00871 Bacterial transcription activator, effector binding domain I33_0642 SM00354 helix_turn _helix lactose operon repressor I33_0645 SM00382 ATPases associated with a variety of cellular activities I33_0649 SM00347 helix_turn_helix multiple antibiotic resistance protein I33_0652 SM00347 helix_turn_helix multiple antibiotic resistance protein I33_0652 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor I33_0656 SM00345 helix_turn_helix gluconate operon transcriptional repressor I33_0656 SM00895 I33_0656 I33_0657 SM00257 Lysin motif I33_0657 SM00636 I33_0657 I33_0661 SM00098 Alkaline phosphatase homologues I33_0665 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. I33_0673 SM00345 helix_turn_helix gluconate operon transcriptional repressor I33_0673 SM00866 I33_0673 I33_0690 SM00382 ATPases associated with a variety of cellular activities I33_0692 SM00881 CoA binding domain I33_0697 SM00883 Chaperonin 10 Kd subunit I33_0700 SM00028 Tetratricopeptide repeats I33_0700 SM00382 ATPases associated with a variety of cellular activities I33_0702 SM00829 Enoylreductase I33_0707 SM00829 Enoylreductase I33_0718 SM00460 Transglutaminase/protease-like homologues I33_0729 SM01001 AIR carboxylase I33_0731 SM00998 Adenylosuccinate lyase C-terminus I33_0734 SM01211 I33_0734 I33_0739 SM00798 AICARFT/IMPCHase bienzyme I33_0739 SM00851 MGS-like domain I33_0740 SM01209 I33_0740 I33_0740 SM01210 I33_0740 I33_0741 SM00344 helix_turn_helix ASNC type I33_0750 SM00278 Helix-hairpin-helix DNA-binding motif class 1 I33_0750 SM00292 breast cancer carboxy-terminal domain I33_0750 SM00532 Ligase N family I33_0758 SM00845 GatB domain I33_0761 SM00046 Diacylglycerol kinase catalytic domain (presumed) I33_0766 SM00487 DEAD-like helicases superfamily I33_0786 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain I33_0786 SM00387 Histidine kinase-like ATPases I33_0787 SM00342 helix_turn_helix, arabinose operon control protein I33_0787 SM00448 cheY-homologous receiver domain I33_0792 SM00342 helix_turn_helix, arabinose operon control protein I33_0813 SM00347 helix_turn_helix multiple antibiotic resistance protein I33_0829 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). I33_0830 SM00382 ATPases associated with a variety of cellular activities I33_0832 SM00422 helix_turn_helix, mercury resistance I33_0835 SM00382 ATPases associated with a variety of cellular activities I33_0836 SM00487 DEAD-like helicases superfamily I33_0836 SM00490 helicase superfamily c-terminal domain I33_0838 SM00829 Enoylreductase I33_0840 SM00382 ATPases associated with a variety of cellular activities I33_0847 SM00656 I33_0847 I33_0853 SM00028 Tetratricopeptide repeats I33_0855 SM00387 Histidine kinase-like ATPases I33_0856 SM00448 cheY-homologous receiver domain I33_0860 SM00849 Metallo-beta-lactamase superfamily I33_0877 SM00642 Alpha-amylase domain I33_0878 SM00345 helix_turn_helix gluconate operon transcriptional repressor I33_0878 SM00866 I33_0878 I33_0886 SM00226 Low molecular weight phosphatase family I33_0899 SM00478 endonuclease III I33_0906 SM00861 Transketolase, pyrimidine binding domain I33_0910 SM00382 ATPases associated with a variety of cellular activities I33_0926 SM00382 ATPases associated with a variety of cellular activities I33_0927 SM00382 ATPases associated with a variety of cellular activities I33_0930 SM00342 helix_turn_helix, arabinose operon control protein I33_0933 SM00387 Histidine kinase-like ATPases I33_0934 SM00421 helix_turn_helix, Lux Regulon I33_0934 SM00448 cheY-homologous receiver domain I33_0936 SM00382 ATPases associated with a variety of cellular activities I33_0946 SM00347 helix_turn_helix multiple antibiotic resistance protein I33_0961 SM00287 Bacterial SH3 domain homologues I33_0966 SM00478 endonuclease III I33_0966 SM00525 I33_0966 I33_0972 SM00382 ATPases associated with a variety of cellular activities I33_1005 SM01060 I33_1005 I33_1006 SM00382 ATPases associated with a variety of cellular activities I33_1007 SM00062 Bacterial periplasmic substrate-binding proteins I33_1013 SM00530 Helix-turn-helix XRE-family like proteins I33_1016 SM00567 E-Z type HEAT repeats I33_1024 SM00763 PrkA AAA domain I33_1026 SM00347 helix_turn_helix multiple antibiotic resistance protein I33_1033 SM00345 helix_turn_helix gluconate operon transcriptional repressor I33_1034 SM00382 ATPases associated with a variety of cellular activities I33_1035 SM00382 ATPases associated with a variety of cellular activities I33_1037 SM00357 Cold shock protein domain I33_1039 SM00267 diguanylate cyclase I33_1045 SM00318 Staphylococcal nuclease homologues I33_1047 SM00363 S4 RNA-binding domain I33_1049 SM00116 Domain in cystathionine beta-synthase and other proteins. I33_1059 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. I33_1059 SM00387 Histidine kinase-like ATPases I33_1060 SM00421 helix_turn_helix, Lux Regulon I33_1060 SM00448 cheY-homologous receiver domain I33_1064 SM00257 Lysin motif I33_1068 SM00098 Alkaline phosphatase homologues I33_1070 SM00257 Lysin motif I33_1076 SM00345 helix_turn_helix gluconate operon transcriptional repressor I33_1082 SM00563 Phosphate acyltransferases I33_1083 SM01091 Transporter associated domain I33_1084 SM00422 helix_turn_helix, mercury resistance I33_1087 SM01091 Transporter associated domain I33_1099 SM00382 ATPases associated with a variety of cellular activities I33_1100 SM00382 ATPases associated with a variety of cellular activities I33_1111 SM00729 Elongator protein 3, MiaB family, Radical SAM I33_1117 SM00382 ATPases associated with a variety of cellular activities I33_1122 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. I33_1129 SM00347 helix_turn_helix multiple antibiotic resistance protein I33_1135 SM00382 ATPases associated with a variety of cellular activities I33_1153 SM01022 I33_1153 I33_1156 SM00849 Metallo-beta-lactamase superfamily I33_1165 SM00829 Enoylreductase I33_1167 SM00855 Phosphoglycerate mutase family I33_1171 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). I33_1174 SM00914 I33_1174 I33_1177 SM00894 Excalibur calcium-binding domain I33_1184 SM00347 helix_turn_helix multiple antibiotic resistance protein I33_1190 SM00354 helix_turn _helix lactose operon repressor I33_1218 SM00342 helix_turn_helix, arabinose operon control protein I33_1219 SM00354 helix_turn _helix lactose operon repressor I33_1232 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain I33_1238 SM00316 Ribosomal protein S1-like RNA-binding domain I33_1251 SM00859 Semialdehyde dehydrogenase, NAD binding domain I33_1255 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain I33_1256 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain I33_1266 SM00825 Beta-ketoacyl synthase I33_1268 SM00382 ATPases associated with a variety of cellular activities I33_1269 SM00382 ATPases associated with a variety of cellular activities I33_1278 SM00382 ATPases associated with a variety of cellular activities I33_1279 SM00382 ATPases associated with a variety of cellular activities I33_1292 SM01118 I33_1292 I33_1294 SM00954 Region found in RelA / SpoT proteins I33_1338 SM00644 I33_1338 I33_1368 SM00926 Molybdopterin oxidoreductase Fe4S4 domain I33_1368 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region I33_1378 SM00382 ATPases associated with a variety of cellular activities I33_1381 SM00835 Cupin I33_1388 SM00829 Enoylreductase I33_1392 SM00354 helix_turn _helix lactose operon repressor I33_1394 SM00858 I33_1394 I33_1397 SM00382 ATPases associated with a variety of cellular activities I33_1398 SM00028 Tetratricopeptide repeats I33_1401 SM00257 Lysin motif I33_1401 SM00644 I33_1401 I33_1406 SM00530 Helix-turn-helix XRE-family like proteins I33_1409 SM00382 ATPases associated with a variety of cellular activities I33_1428 SM00257 Lysin motif I33_1441 SM00257 Lysin motif I33_1441 SM00644 I33_1441 I33_1452 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. I33_1457 SM00382 ATPases associated with a variety of cellular activities I33_1461 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain I33_1463 SM00382 ATPases associated with a variety of cellular activities I33_1475 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase I33_1478 SM00347 helix_turn_helix multiple antibiotic resistance protein I33_1482 SM00855 Phosphoglycerate mutase family I33_1489 SM00382 ATPases associated with a variety of cellular activities I33_1492 SM00448 cheY-homologous receiver domain I33_1492 SM00862 Transcriptional regulatory protein, C terminal I33_1498 SM00116 Domain in cystathionine beta-synthase and other proteins. I33_1498 SM00924 MgtE intracellular N domain I33_1499 SM00422 helix_turn_helix, mercury resistance I33_1502 SM00347 helix_turn_helix multiple antibiotic resistance protein I33_1509 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen I33_1510 SM00052 Putative diguanylate phosphodiesterase I33_1510 SM00267 diguanylate cyclase I33_1523 SM00091 PAS domain I33_1523 SM00387 Histidine kinase-like ATPases I33_1523 SM00388 His Kinase A (phosphoacceptor) domain I33_1532 SM01007 Class II Aldolase and Adducin N-terminal domain I33_1537 SM00387 Histidine kinase-like ATPases I33_1537 SM00388 His Kinase A (phosphoacceptor) domain I33_1538 SM00347 helix_turn_helix multiple antibiotic resistance protein I33_1541 SM00382 ATPases associated with a variety of cellular activities I33_1541 SM01086 C-terminal, D2-small domain, of ClpB protein I33_1549 SM00822 I33_1549 I33_1551 SM00257 Lysin motif I33_1552 SM00636 I33_1552 I33_1565 SM00354 helix_turn _helix lactose operon repressor I33_1566 SM01061 CAT RNA binding domain I33_1573 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). I33_1573 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain I33_1577 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) I33_1577 SM00091 PAS domain I33_1577 SM00387 Histidine kinase-like ATPases I33_1577 SM00388 His Kinase A (phosphoacceptor) domain I33_1580 SM00260 Two component signalling adaptor domain I33_1580 SM00448 cheY-homologous receiver domain I33_1583 SM00257 Lysin motif I33_1586 SM00052 Putative diguanylate phosphodiesterase I33_1606 SM00852 Probable molybdopterin binding domain I33_1610 SM00382 ATPases associated with a variety of cellular activities I33_1611 SM00382 ATPases associated with a variety of cellular activities I33_1614 SM00382 ATPases associated with a variety of cellular activities I33_1615 SM01066 Carbohydrate binding domain I33_1616 SM00420 helix_turn_helix, Deoxyribose operon repressor I33_1616 SM01134 I33_1616 I33_1621 SM00382 ATPases associated with a variety of cellular activities I33_1626 SM00966 SpoVT / AbrB like domain I33_1627 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) I33_1627 SM00091 PAS domain I33_1627 SM00387 Histidine kinase-like ATPases I33_1627 SM00388 His Kinase A (phosphoacceptor) domain I33_1631 SM00849 Metallo-beta-lactamase superfamily I33_1639 SM00861 Transketolase, pyrimidine binding domain I33_1659 SM00838 Elongation factor G C-terminus I33_1663 SM00670 Large family of predicted nucleotide-binding domains I33_1668 SM00878 Biotin carboxylase C-terminal domain I33_1679 SM00116 Domain in cystathionine beta-synthase and other proteins. I33_1690 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. I33_1702 SM00740 I33_1702 I33_1703 SM00740 I33_1703 I33_1714 SM00842 Cell division protein FtsA I33_1715 SM00864 Tubulin/FtsZ family, GTPase domain I33_1715 SM00865 Tubulin/FtsZ family, C-terminal domain I33_1720 SM00382 ATPases associated with a variety of cellular activities I33_1727 SM00363 S4 RNA-binding domain I33_1733 SM00363 S4 RNA-binding domain I33_1738 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain I33_1739 SM00851 MGS-like domain I33_1739 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain I33_1739 SM01209 I33_1739 I33_1742 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family I33_1752 SM00831 Cation transporter/ATPase, N-terminus I33_1755 SM00072 Guanylate kinase homologues. I33_1756 SM01409 I33_1756 I33_1758 SM00487 DEAD-like helicases superfamily I33_1758 SM00490 helicase superfamily c-terminal domain I33_1763 SM00331 Sigma factor PP2C-like phosphatases I33_1763 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain I33_1764 SM00220 Serine/Threonine protein kinases, catalytic domain I33_1764 SM00740 I33_1764 I33_1767 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain I33_1770 SM01120 I33_1770 I33_1770 SM01121 I33_1770 I33_1773 SM00487 DEAD-like helicases superfamily I33_1773 SM00490 helicase superfamily c-terminal domain I33_1776 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. I33_1777 SM00822 I33_1777 I33_1779 SM00358 Double-stranded RNA binding motif I33_1779 SM00535 Ribonuclease III family I33_1780 SM00968 SMC proteins Flexible Hinge Domain I33_1781 SM00382 ATPases associated with a variety of cellular activities I33_1781 SM00962 SRP54-type protein, GTPase domain I33_1781 SM00963 SRP54-type protein, helical bundle domain I33_1784 SM00382 ATPases associated with a variety of cellular activities I33_1784 SM00962 SRP54-type protein, GTPase domain I33_1784 SM00963 SRP54-type protein, helical bundle domain I33_1796 SM00881 CoA binding domain I33_1798 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain I33_1798 SM00437 Bacterial DNA topoisomerase I DNA-binding domain I33_1798 SM00493 I33_1798 I33_1802 SM00382 ATPases associated with a variety of cellular activities I33_1802 SM01086 C-terminal, D2-small domain, of ClpB protein I33_1810 SM00382 ATPases associated with a variety of cellular activities I33_1820 SM00448 cheY-homologous receiver domain I33_1827 SM00962 SRP54-type protein, GTPase domain I33_1829 SM00448 cheY-homologous receiver domain I33_1830 SM00073 Histidine Phosphotransfer domain I33_1830 SM00260 Two component signalling adaptor domain I33_1830 SM00387 Histidine kinase-like ATPases I33_1830 SM01231 I33_1830 I33_1831 SM00260 Two component signalling adaptor domain I33_1843 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. I33_1845 SM00479 I33_1845 I33_1845 SM00481 DNA polymerase alpha chain like domain I33_1847 SM00316 Ribosomal protein S1-like RNA-binding domain I33_1847 SM00322 K homology RNA-binding domain I33_1854 SM00904 Riboflavin kinase I33_1855 SM00316 Ribosomal protein S1-like RNA-binding domain I33_1855 SM00322 K homology RNA-binding domain I33_1862 SM00859 Semialdehyde dehydrogenase, NAD binding domain I33_1864 SM01130 I33_1864 I33_1865 SM00849 Metallo-beta-lactamase superfamily I33_1868 SM00382 ATPases associated with a variety of cellular activities I33_1868 SM00843 I33_1868 I33_1869 SM00345 helix_turn_helix gluconate operon transcriptional repressor I33_1869 SM00866 I33_1869 I33_1879 SM00852 Probable molybdopterin binding domain I33_1880 SM00382 ATPases associated with a variety of cellular activities I33_1882 SM00322 K homology RNA-binding domain I33_1882 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. I33_1885 SM00829 Enoylreductase I33_1890 SM00533 DNA-binding domain of DNA mismatch repair MUTS family I33_1890 SM00534 ATPase domain of DNA mismatch repair MUTS family I33_1891 SM00853 MutL C terminal dimerisation domain I33_1891 SM01340 I33_1891 I33_1895 SM00849 Metallo-beta-lactamase superfamily I33_1896 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. I33_1898 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. I33_1899 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. I33_1901 SM00825 Beta-ketoacyl synthase I33_1905 SM00822 I33_1905 I33_1905 SM00823 Phosphopantetheine attachment site I33_1905 SM00825 Beta-ketoacyl synthase I33_1905 SM00826 I33_1905 I33_1905 SM01294 I33_1905 I33_1906 SM00822 I33_1906 I33_1906 SM00823 Phosphopantetheine attachment site I33_1906 SM00825 Beta-ketoacyl synthase I33_1906 SM00826 I33_1906 I33_1906 SM01294 I33_1906 I33_1907 SM00822 I33_1907 I33_1907 SM00823 Phosphopantetheine attachment site I33_1907 SM00825 Beta-ketoacyl synthase I33_1907 SM00826 I33_1907 I33_1907 SM01294 I33_1907 I33_1908 SM00822 I33_1908 I33_1908 SM00823 Phosphopantetheine attachment site I33_1908 SM00825 Beta-ketoacyl synthase I33_1908 SM00826 I33_1908 I33_1908 SM01294 I33_1908 I33_1909 SM00823 Phosphopantetheine attachment site I33_1909 SM00825 Beta-ketoacyl synthase I33_1909 SM01294 I33_1909 I33_1912 SM00849 Metallo-beta-lactamase superfamily I33_1932 SM00646 I33_1932 I33_1935 SM00382 ATPases associated with a variety of cellular activities I33_1938 SM00422 helix_turn_helix, mercury resistance I33_1939 SM01230 I33_1939 I33_1946 SM00860 SMI1 / KNR4 family I33_1952 SM00860 SMI1 / KNR4 family I33_1967 SM00318 Staphylococcal nuclease homologues I33_1969 SM01005 Alanine racemase, C-terminal domain I33_1998 SM00257 Lysin motif I33_1999 SM00857 Resolvase, N terminal domain I33_2001 SM00861 Transketolase, pyrimidine binding domain I33_2006 SM00448 cheY-homologous receiver domain I33_2020 SM01207 I33_2020 I33_2022 SM00881 CoA binding domain I33_2024 SM00387 Histidine kinase-like ATPases I33_2024 SM00433 TopoisomeraseII I33_2025 SM00434 DNA Topoisomerase IV I33_2031 SM01067 Cellulose binding domain I33_2034 SM00606 Cellulose Binding Domain Type IV I33_2043 SM00878 Biotin carboxylase C-terminal domain I33_2051 SM00823 Phosphopantetheine attachment site I33_2051 SM00824 Thioesterase I33_2052 SM00823 Phosphopantetheine attachment site I33_2053 SM00823 Phosphopantetheine attachment site I33_2054 SM00823 Phosphopantetheine attachment site I33_2055 SM00823 Phosphopantetheine attachment site I33_2065 SM00829 Enoylreductase I33_2069 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase I33_2073 SM00822 I33_2073 I33_2080 SM00926 Molybdopterin oxidoreductase Fe4S4 domain I33_2085 SM00354 helix_turn _helix lactose operon repressor I33_2089 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). I33_2089 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain I33_2093 SM00656 I33_2093 I33_2097 SM00835 Cupin I33_2103 SM00530 Helix-turn-helix XRE-family like proteins I33_2116 SM00530 Helix-turn-helix XRE-family like proteins I33_2135 SM00860 SMI1 / KNR4 family I33_2137 SM00710 Parallel beta-helix repeats I33_2139 SM00342 helix_turn_helix, arabinose operon control protein I33_2142 SM00849 Metallo-beta-lactamase superfamily I33_2143 SM00871 Bacterial transcription activator, effector binding domain I33_2146 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor I33_2154 SM00421 helix_turn_helix, Lux Regulon I33_2154 SM00448 cheY-homologous receiver domain I33_2156 SM00257 Lysin motif I33_2157 SM00341 Helicase and RNase D C-terminal I33_2157 SM00487 DEAD-like helicases superfamily I33_2157 SM00490 helicase superfamily c-terminal domain I33_2157 SM00956 I33_2157 I33_2175 SM00861 Transketolase, pyrimidine binding domain I33_2176 SM00327 von Willebrand factor (vWF) type A domain I33_2177 SM00382 ATPases associated with a variety of cellular activities I33_2179 SM00257 Lysin motif I33_2199 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. I33_2199 SM00245 tail specific protease I33_2206 SM00014 Acid phosphatase homologues I33_2215 SM00882 Coenzyme A transferase I33_2216 SM00882 Coenzyme A transferase I33_2228 SM00347 helix_turn_helix multiple antibiotic resistance protein I33_2236 SM00382 ATPases associated with a variety of cellular activities I33_2246 SM00567 E-Z type HEAT repeats I33_2246 SM00932 Scaffold protein Nfu/NifU N terminal I33_2247 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. I33_2252 SM00357 Cold shock protein domain I33_2260 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs I33_2260 SM00475 5'-3' exonuclease I33_2272 SM00354 helix_turn _helix lactose operon repressor I33_2275 SM00491 I33_2275 I33_2277 SM00981 I33_2277 I33_2282 SM00487 DEAD-like helicases superfamily I33_2282 SM00490 helicase superfamily c-terminal domain I33_2294 SM00478 endonuclease III I33_2294 SM00525 I33_2294 I33_2300 SM00479 I33_2300 I33_2300 SM00487 DEAD-like helicases superfamily I33_2300 SM00491 I33_2300 I33_2308 SM00851 MGS-like domain I33_2318 SM00914 I33_2318 I33_2319 SM00028 Tetratricopeptide repeats I33_2332 SM00138 Methyltransferase, chemotaxis proteins I33_2333 SM00562 I33_2333 I33_2339 SM00411 bacterial (prokaryotic) histone like domain I33_2349 SM01240 I33_2349 I33_2350 SM00316 Ribosomal protein S1-like RNA-binding domain I33_2360 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase I33_2365 SM00257 Lysin motif I33_2367 SM00487 DEAD-like helicases superfamily I33_2367 SM00490 helicase superfamily c-terminal domain I33_2376 SM00091 PAS domain I33_2376 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain I33_2376 SM00387 Histidine kinase-like ATPases I33_2376 SM00388 His Kinase A (phosphoacceptor) domain I33_2377 SM00448 cheY-homologous receiver domain I33_2377 SM00862 Transcriptional regulatory protein, C terminal I33_2381 SM00363 S4 RNA-binding domain I33_2384 SM00936 Penicillin-binding protein 5, C-terminal domain I33_2416 SM00387 Histidine kinase-like ATPases I33_2428 SM00919 Malic enzyme, NAD binding domain I33_2428 SM01274 I33_2428 I33_2431 SM00870 I33_2431 I33_2432 SM00530 Helix-turn-helix XRE-family like proteins I33_2454 SM00849 Metallo-beta-lactamase superfamily I33_2460 SM00849 Metallo-beta-lactamase superfamily I33_2463 SM01350 I33_2463 I33_2473 SM00382 ATPases associated with a variety of cellular activities I33_2475 SM00062 Bacterial periplasmic substrate-binding proteins I33_2475 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. I33_2478 SM00046 Diacylglycerol kinase catalytic domain (presumed) I33_2480 SM00422 helix_turn_helix, mercury resistance I33_2482 SM00861 Transketolase, pyrimidine binding domain I33_2486 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase I33_2488 SM00091 PAS domain I33_2488 SM00382 ATPases associated with a variety of cellular activities I33_2497 SM00646 I33_2497 I33_2502 SM00448 cheY-homologous receiver domain I33_2503 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. I33_2506 SM00363 S4 RNA-binding domain I33_2507 SM00861 Transketolase, pyrimidine binding domain I33_2514 SM00878 Biotin carboxylase C-terminal domain I33_2523 SM00382 ATPases associated with a variety of cellular activities I33_2525 SM00841 Elongation factor P, C-terminal I33_2525 SM01185 I33_2525 I33_2532 SM00529 Helix-turn-helix diphteria tox regulatory element I33_2534 SM00450 Rhodanese Homology Domain I33_2538 SM00487 DEAD-like helicases superfamily I33_2538 SM00490 helicase superfamily c-terminal domain I33_2541 SM00530 Helix-turn-helix XRE-family like proteins I33_2553 SM00382 ATPases associated with a variety of cellular activities I33_2556 SM01091 Transporter associated domain I33_2561 SM00849 Metallo-beta-lactamase superfamily I33_2565 SM00631 I33_2565 I33_2569 SM00028 Tetratricopeptide repeats I33_2578 SM00382 ATPases associated with a variety of cellular activities I33_2579 SM00382 ATPases associated with a variety of cellular activities I33_2588 SM00257 Lysin motif I33_2595 SM00518 AP endonuclease family 2 I33_2596 SM00487 DEAD-like helicases superfamily I33_2596 SM00490 helicase superfamily c-terminal domain I33_2604 SM00400 zinc finger I33_2604 SM00493 I33_2604 I33_2608 SM00116 Domain in cystathionine beta-synthase and other proteins. I33_2617 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. I33_2627 SM00729 Elongator protein 3, MiaB family, Radical SAM I33_2630 SM00271 DnaJ molecular chaperone homology domain I33_2634 SM00729 Elongator protein 3, MiaB family, Radical SAM I33_2635 SM00838 Elongation factor G C-terminus I33_2643 SM00849 Metallo-beta-lactamase superfamily I33_2646 SM00278 Helix-hairpin-helix DNA-binding motif class 1 I33_2650 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. I33_2652 SM01103 I33_2652 I33_2659 SM00644 I33_2659 I33_2661 SM01350 I33_2661 I33_2680 SM00028 Tetratricopeptide repeats I33_2686 SM00860 SMI1 / KNR4 family I33_2689 SM00860 SMI1 / KNR4 family I33_2697 SM00422 helix_turn_helix, mercury resistance I33_2700 SM01091 Transporter associated domain I33_2721 SM00903 Flavin reductase like domain I33_2723 SM00422 helix_turn_helix, mercury resistance I33_2733 SM00287 Bacterial SH3 domain homologues I33_2741 SM00422 helix_turn_helix, mercury resistance I33_2742 SM00829 Enoylreductase I33_2744 SM00640 Glycosyl hydrolases family 32 I33_2749 SM00382 ATPases associated with a variety of cellular activities I33_2764 SM00926 Molybdopterin oxidoreductase Fe4S4 domain I33_2764 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region I33_2781 SM00732 Likely ribonuclease with RNase H fold. I33_2783 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain I33_2786 SM00382 ATPases associated with a variety of cellular activities I33_2787 SM00062 Bacterial periplasmic substrate-binding proteins I33_2787 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. I33_2793 SM00382 ATPases associated with a variety of cellular activities I33_2794 SM00028 Tetratricopeptide repeats I33_2798 SM00382 ATPases associated with a variety of cellular activities I33_2804 SM00287 Bacterial SH3 domain homologues I33_2804 SM00646 I33_2804 I33_2806 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. I33_2806 SM00954 Region found in RelA / SpoT proteins I33_2816 SM01323 I33_2816 I33_2820 SM00382 ATPases associated with a variety of cellular activities I33_2821 SM00278 Helix-hairpin-helix DNA-binding motif class 1 I33_2832 SM00257 Lysin motif I33_2841 SM01317 I33_2841 I33_2861 SM00257 Lysin motif I33_2863 SM01004 Delta-aminolevulinic acid dehydratase I33_2870 SM00382 ATPases associated with a variety of cellular activities I33_2870 SM00464 Found in ATP-dependent protease La (LON) I33_2871 SM00382 ATPases associated with a variety of cellular activities I33_2872 SM00382 ATPases associated with a variety of cellular activities I33_2872 SM00994 ClpX C4-type zinc finger I33_2872 SM01086 C-terminal, D2-small domain, of ClpB protein I33_2878 SM01329 I33_2878 I33_2879 SM00917 LeuA allosteric (dimerisation) domain I33_2885 SM00612 I33_2885 I33_2891 SM00909 Sporulation and spore germination I33_2893 SM00347 helix_turn_helix multiple antibiotic resistance protein I33_2895 SM00421 helix_turn_helix, Lux Regulon I33_2902 SM00465 GIY-YIG type nucleases (URI domain) I33_2906 SM00813 Alpha-L-arabinofuranosidase C-terminus I33_2907 SM00893 Electron transfer flavoprotein domain I33_2908 SM00893 Electron transfer flavoprotein domain I33_2913 SM00463 Small MutS-related domain I33_2913 SM00533 DNA-binding domain of DNA mismatch repair MUTS family I33_2913 SM00534 ATPase domain of DNA mismatch repair MUTS family I33_2914 SM00278 Helix-hairpin-helix DNA-binding motif class 1 I33_2914 SM00481 DNA polymerase alpha chain like domain I33_2914 SM00483 DNA polymerase X family I33_2918 SM00873 B3/4 domain I33_2918 SM00874 tRNA synthetase B5 domain I33_2918 SM00896 Ferredoxin-fold anticodon binding domain I33_2921 SM00967 RNA 2'-O ribose methyltransferase substrate binding I33_2928 SM00813 Alpha-L-arabinofuranosidase C-terminus I33_2934 SM01007 Class II Aldolase and Adducin N-terminal domain I33_2947 SM00448 cheY-homologous receiver domain I33_2947 SM00850 LytTr DNA-binding domain I33_2948 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. I33_2948 SM00387 Histidine kinase-like ATPases I33_2950 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain I33_2954 SM00382 ATPases associated with a variety of cellular activities I33_2959 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain I33_2965 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain I33_2965 SM01232 I33_2965 I33_2966 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs I33_2966 SM00474 3'-5' exonuclease I33_2966 SM00475 5'-3' exonuclease I33_2966 SM00482 DNA polymerase A domain I33_2967 SM00091 PAS domain I33_2967 SM00387 Histidine kinase-like ATPases I33_2967 SM00388 His Kinase A (phosphoacceptor) domain I33_2968 SM00448 cheY-homologous receiver domain I33_2968 SM00862 Transcriptional regulatory protein, C terminal I33_2971 SM01329 I33_2971 I33_2981 SM00919 Malic enzyme, NAD binding domain I33_2981 SM01274 I33_2981 I33_2982 SM00481 DNA polymerase alpha chain like domain I33_2989 SM00116 Domain in cystathionine beta-synthase and other proteins. I33_2990 SM00849 Metallo-beta-lactamase superfamily I33_2996 SM00852 Probable molybdopterin binding domain I33_3010 SM00981 I33_3010 I33_3016 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. I33_3017 SM00267 diguanylate cyclase I33_3019 SM00363 S4 RNA-binding domain I33_3019 SM01390 I33_3019 I33_3021 SM00363 S4 RNA-binding domain I33_3024 SM00116 Domain in cystathionine beta-synthase and other proteins. I33_3029 SM00830 Chorismate mutase type II I33_3044 SM00919 Malic enzyme, NAD binding domain I33_3044 SM01274 I33_3044 I33_3045 SM00849 Metallo-beta-lactamase superfamily I33_3049 SM00642 Alpha-amylase domain I33_3050 SM00046 Diacylglycerol kinase catalytic domain (presumed) I33_3057 SM00382 ATPases associated with a variety of cellular activities I33_3058 SM00420 helix_turn_helix, Deoxyribose operon repressor I33_3059 SM00363 S4 RNA-binding domain I33_3069 SM00342 helix_turn_helix, arabinose operon control protein I33_3074 SM00729 Elongator protein 3, MiaB family, Radical SAM I33_3074 SM00876 Biotin and Thiamin Synthesis associated domain I33_3080 SM00354 helix_turn _helix lactose operon repressor I33_3085 SM00450 Rhodanese Homology Domain I33_3089 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) I33_3089 SM00091 PAS domain I33_3094 SM00382 ATPases associated with a variety of cellular activities I33_3095 SM00387 Histidine kinase-like ATPases I33_3096 SM00448 cheY-homologous receiver domain I33_3096 SM00862 Transcriptional regulatory protein, C terminal I33_3098 SM00382 ATPases associated with a variety of cellular activities I33_3101 SM00382 ATPases associated with a variety of cellular activities I33_3102 SM00345 helix_turn_helix gluconate operon transcriptional repressor I33_3105 SM00729 Elongator protein 3, MiaB family, Radical SAM I33_3117 SM00382 ATPases associated with a variety of cellular activities I33_3126 SM01234 I33_3126 I33_3127 SM00947 Carbonic anhydrase I33_3134 SM00382 ATPases associated with a variety of cellular activities I33_3137 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain I33_3146 SM00984 UDP binding domain I33_3158 SM00642 Alpha-amylase domain I33_3185 SM00244 prohibitin homologues I33_3196 SM00047 Lysozyme subfamily 2 I33_3208 SM00420 helix_turn_helix, Deoxyribose operon repressor I33_3208 SM01134 I33_3208 I33_3209 SM01007 Class II Aldolase and Adducin N-terminal domain I33_3210 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). I33_3210 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain I33_3210 SM00319 Homologues of the ligand binding domain of Tar I33_3211 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). I33_3211 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain I33_3211 SM00319 Homologues of the ligand binding domain of Tar I33_3212 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). I33_3212 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain I33_3212 SM00319 Homologues of the ligand binding domain of Tar I33_3213 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). I33_3213 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain I33_3213 SM00319 Homologues of the ligand binding domain of Tar I33_3218 SM00642 Alpha-amylase domain I33_3219 SM01091 Transporter associated domain I33_3230 SM00316 Ribosomal protein S1-like RNA-binding domain I33_3232 SM00344 helix_turn_helix ASNC type I33_3236 SM00387 Histidine kinase-like ATPases I33_3236 SM00388 His Kinase A (phosphoacceptor) domain I33_3237 SM01298 I33_3237 I33_3238 SM00479 I33_3238 I33_3244 SM00091 PAS domain I33_3244 SM00387 Histidine kinase-like ATPases I33_3245 SM00448 cheY-homologous receiver domain I33_3247 SM00382 ATPases associated with a variety of cellular activities I33_3260 SM00421 helix_turn_helix, Lux Regulon I33_3260 SM00448 cheY-homologous receiver domain I33_3261 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. I33_3261 SM00387 Histidine kinase-like ATPases I33_3266 SM00052 Putative diguanylate phosphodiesterase I33_3275 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. I33_3284 SM01002 Alanine dehydrogenase/PNT, C-terminal domain I33_3284 SM01003 Alanine dehydrogenase/PNT, N-terminal domain I33_3286 SM00923 MbtH-like protein I33_3287 SM00823 Phosphopantetheine attachment site I33_3287 SM00824 Thioesterase I33_3306 SM01240 I33_3306 I33_3309 SM00382 ATPases associated with a variety of cellular activities I33_3333 SM00729 Elongator protein 3, MiaB family, Radical SAM I33_3351 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain I33_3359 SM00382 ATPases associated with a variety of cellular activities I33_3360 SM00345 helix_turn_helix gluconate operon transcriptional repressor I33_3360 SM00866 I33_3360 I33_3366 SM00465 GIY-YIG type nucleases (URI domain) I33_3375 SM00382 ATPases associated with a variety of cellular activities I33_3382 SM00382 ATPases associated with a variety of cellular activities I33_3382 SM00930 I33_3382 I33_3386 SM00493 I33_3386 I33_3396 SM00347 helix_turn_helix multiple antibiotic resistance protein I33_3402 SM00382 ATPases associated with a variety of cellular activities I33_3407 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. I33_3409 SM00448 cheY-homologous receiver domain I33_3409 SM00862 Transcriptional regulatory protein, C terminal I33_3410 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain I33_3410 SM00387 Histidine kinase-like ATPases I33_3410 SM00388 His Kinase A (phosphoacceptor) domain I33_3418 SM00421 helix_turn_helix, Lux Regulon I33_3418 SM00448 cheY-homologous receiver domain I33_3419 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain I33_3419 SM00387 Histidine kinase-like ATPases I33_3427 SM00382 ATPases associated with a variety of cellular activities I33_3433 SM00387 Histidine kinase-like ATPases I33_3433 SM00388 His Kinase A (phosphoacceptor) domain I33_3434 SM00448 cheY-homologous receiver domain I33_3434 SM00862 Transcriptional regulatory protein, C terminal I33_3439 SM00835 Cupin I33_3442 SM00382 ATPases associated with a variety of cellular activities I33_3445 SM00382 ATPases associated with a variety of cellular activities I33_3483 SM00316 Ribosomal protein S1-like RNA-binding domain I33_3483 SM00357 Cold shock protein domain I33_3483 SM00955 I33_3483 I33_3487 SM00530 Helix-turn-helix XRE-family like proteins I33_3488 SM00530 Helix-turn-helix XRE-family like proteins I33_3489 SM00530 Helix-turn-helix XRE-family like proteins I33_3491 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). I33_3491 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain I33_3495 SM00116 Domain in cystathionine beta-synthase and other proteins. I33_3495 SM00382 ATPases associated with a variety of cellular activities I33_3500 SM00116 Domain in cystathionine beta-synthase and other proteins. I33_3500 SM00382 ATPases associated with a variety of cellular activities I33_3507 SM01192 I33_3507 I33_3507 SM01193 I33_3507 I33_3512 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain I33_3515 SM00345 helix_turn_helix gluconate operon transcriptional repressor I33_3520 SM00636 I33_3520 I33_3524 SM00421 helix_turn_helix, Lux Regulon I33_3524 SM00448 cheY-homologous receiver domain I33_3527 SM00382 ATPases associated with a variety of cellular activities I33_3530 SM00331 Sigma factor PP2C-like phosphatases I33_3536 SM00354 helix_turn _helix lactose operon repressor I33_3537 SM00345 helix_turn_helix gluconate operon transcriptional repressor I33_3537 SM00895 I33_3537 I33_3557 SM00530 Helix-turn-helix XRE-family like proteins I33_3565 SM00640 Glycosyl hydrolases family 32 I33_3575 SM00642 Alpha-amylase domain I33_3581 SM00642 Alpha-amylase domain I33_3582 SM00354 helix_turn _helix lactose operon repressor I33_3586 SM00947 Carbonic anhydrase I33_3589 SM00382 ATPases associated with a variety of cellular activities I33_3590 SM00387 Histidine kinase-like ATPases I33_3591 SM00448 cheY-homologous receiver domain I33_3591 SM00862 Transcriptional regulatory protein, C terminal I33_3608 SM00028 Tetratricopeptide repeats I33_3609 SM00382 ATPases associated with a variety of cellular activities I33_3634 SM00345 helix_turn_helix gluconate operon transcriptional repressor I33_3634 SM00866 I33_3634 I33_3643 SM00382 ATPases associated with a variety of cellular activities I33_3644 SM00487 DEAD-like helicases superfamily I33_3644 SM00490 helicase superfamily c-terminal domain I33_3650 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. I33_3652 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. I33_3652 SM00245 tail specific protease I33_3654 SM00382 ATPases associated with a variety of cellular activities I33_3657 SM00937 I33_3657 I33_3658 SM00957 SecA DEAD-like domain I33_3658 SM00958 SecA preprotein cross-linking domain I33_3676 SM00487 DEAD-like helicases superfamily I33_3676 SM00490 helicase superfamily c-terminal domain I33_3678 SM00421 helix_turn_helix, Lux Regulon I33_3678 SM00448 cheY-homologous receiver domain I33_3679 SM00387 Histidine kinase-like ATPases I33_3687 SM00984 UDP binding domain I33_3692 SM00646 I33_3692 I33_3698 SM00382 ATPases associated with a variety of cellular activities I33_3707 SM00047 Lysozyme subfamily 2 I33_3707 SM00287 Bacterial SH3 domain homologues I33_3717 SM00854 Bacterial capsule synthesis protein PGA_cap I33_3720 SM00354 helix_turn _helix lactose operon repressor I33_3723 SM00382 ATPases associated with a variety of cellular activities I33_3726 SM00287 Bacterial SH3 domain homologues I33_3737 SM00903 Flavin reductase like domain I33_3740 SM00344 helix_turn_helix ASNC type I33_3754 SM00984 UDP binding domain I33_3760 SM00487 DEAD-like helicases superfamily I33_3760 SM00490 helicase superfamily c-terminal domain I33_3762 SM00420 helix_turn_helix, Deoxyribose operon repressor I33_3762 SM01134 I33_3762 I33_3769 SM00448 cheY-homologous receiver domain I33_3770 SM00387 Histidine kinase-like ATPases I33_3770 SM00388 His Kinase A (phosphoacceptor) domain I33_3770 SM00448 cheY-homologous receiver domain I33_3773 SM00028 Tetratricopeptide repeats I33_3778 SM00347 helix_turn_helix multiple antibiotic resistance protein I33_3781 SM00710 Parallel beta-helix repeats I33_3781 SM00722 Domain present in carbohydrate binding proteins and sugar hydrolses I33_3787 SM00938 Nitrogen regulatory protein P-II I33_3788 SM00014 Acid phosphatase homologues I33_3795 SM00155 Phospholipase D. Active site motifs. I33_3796 SM00422 helix_turn_helix, mercury resistance I33_3809 SM00028 Tetratricopeptide repeats I33_3810 SM00729 Elongator protein 3, MiaB family, Radical SAM I33_3813 SM00327 von Willebrand factor (vWF) type A domain I33_3816 SM00327 von Willebrand factor (vWF) type A domain I33_3824 SM00382 ATPases associated with a variety of cellular activities I33_3837 SM00226 Low molecular weight phosphatase family I33_3845 SM00937 I33_3845 I33_3849 SM00919 Malic enzyme, NAD binding domain I33_3849 SM01274 I33_3849 I33_3852 SM00357 Cold shock protein domain I33_3852 SM00382 ATPases associated with a variety of cellular activities I33_3852 SM00959 Rho termination factor, N-terminal domain I33_3858 SM00448 cheY-homologous receiver domain I33_3864 SM00155 Phospholipase D. Active site motifs. I33_3868 SM00382 ATPases associated with a variety of cellular activities I33_3869 SM00155 Phospholipase D. Active site motifs. I33_3874 SM00926 Molybdopterin oxidoreductase Fe4S4 domain I33_3877 SM00100 Cyclic nucleotide-monophosphate binding domain I33_3877 SM00419 helix_turn_helix, cAMP Regulatory protein I33_3879 SM00836 DALR anticodon binding domain I33_3879 SM01016 Arginyl tRNA synthetase N terminal dom I33_3882 SM00729 Elongator protein 3, MiaB family, Radical SAM I33_3892 SM00028 Tetratricopeptide repeats I33_3901 SM00347 helix_turn_helix multiple antibiotic resistance protein I33_3902 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain I33_3907 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. I33_3929 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase I33_3938 SM00858 I33_3938 I33_3950 SM00986 Uracil DNA glycosylase superfamily I33_3950 SM00987 UreE urease accessory protein, C-terminal domain I33_3954 SM00640 Glycosyl hydrolases family 32 I33_3988 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase I33_3996 SM01061 CAT RNA binding domain I33_3999 SM00347 helix_turn_helix multiple antibiotic resistance protein I33_4000 SM00363 S4 RNA-binding domain I33_4002 SM00954 Region found in RelA / SpoT proteins I33_4019 SM01060 I33_4019 I33_4022 SM00382 ATPases associated with a variety of cellular activities I33_4030 SM00382 ATPases associated with a variety of cellular activities I33_4031 SM00382 ATPases associated with a variety of cellular activities I33_4039 SM00382 ATPases associated with a variety of cellular activities I33_4050 SM00421 helix_turn_helix, Lux Regulon I33_4050 SM00448 cheY-homologous receiver domain I33_4058 SM00882 Coenzyme A transferase I33_4059 SM00882 Coenzyme A transferase I33_4066 SM01060 I33_4066 I33_4070 SM01061 CAT RNA binding domain I33_4074 SM00487 DEAD-like helicases superfamily I33_4074 SM00490 helicase superfamily c-terminal domain I33_4108 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain I33_4110 SM01133 I33_4110 I33_4116 SM00382 ATPases associated with a variety of cellular activities I33_4118 SM00062 Bacterial periplasmic substrate-binding proteins I33_4133 SM00382 ATPases associated with a variety of cellular activities I33_4134 SM00387 Histidine kinase-like ATPases I33_4135 SM00448 cheY-homologous receiver domain I33_4135 SM00862 Transcriptional regulatory protein, C terminal I33_4146 SM00420 helix_turn_helix, Deoxyribose operon repressor I33_4146 SM01134 I33_4146 I33_4153 SM00387 Histidine kinase-like ATPases I33_4159 SM00422 helix_turn_helix, mercury resistance I33_4165 SM00347 helix_turn_helix multiple antibiotic resistance protein I33_4170 SM00345 helix_turn_helix gluconate operon transcriptional repressor I33_4170 SM00895 I33_4170 I33_4173 SM01350 I33_4173 I33_4178 SM00345 helix_turn_helix gluconate operon transcriptional repressor I33_4178 SM00866 I33_4178 I33_4181 SM00382 ATPases associated with a variety of cellular activities I33_4205 SM00091 PAS domain I33_4205 SM00382 ATPases associated with a variety of cellular activities I33_4206 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. I33_4207 SM00849 Metallo-beta-lactamase superfamily I33_4210 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) I33_4210 SM00091 PAS domain I33_4210 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain I33_4210 SM00387 Histidine kinase-like ATPases I33_4210 SM00388 His Kinase A (phosphoacceptor) domain I33_4211 SM00448 cheY-homologous receiver domain I33_4211 SM00862 Transcriptional regulatory protein, C terminal I33_4216 SM00788 Adenylosuccinate synthetase I33_4218 SM00382 ATPases associated with a variety of cellular activities I33_4225 SM00267 diguanylate cyclase I33_4231 SM01131 I33_4231 I33_4235 SM00422 helix_turn_helix, mercury resistance I33_4247 SM00849 Metallo-beta-lactamase superfamily I33_4248 SM00347 helix_turn_helix multiple antibiotic resistance protein I33_4255 SM01266 I33_4255 I33_4257 SM00354 helix_turn _helix lactose operon repressor I33_4262 SM00926 Molybdopterin oxidoreductase Fe4S4 domain I33_4266 SM00470 ParB-like nuclease domain I33_4269 SM00470 ParB-like nuclease domain I33_4271 SM01228 I33_4271 I33_4273 SM00322 K homology RNA-binding domain I33_4273 SM00393 Putative single-stranded nucleic acids-binding domain I33_4273 SM01245 I33_4273