locus-tag	class	description
CQJ30_00005	COG0593	it binds specifically double-stranded DNA at a 9 bp consensus (dnaA box) 5'-TTATC CA A CA A-3'. DnaA binds to ATP and to acidic phospholipids
CQJ30_00010	COG0592	DNA-directed DNA polymerase activity
CQJ30_00015	COG2501	S4 domain
CQJ30_00020	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
CQJ30_00025	COG0187	DNA topoisomerase II activity
CQJ30_00030	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
CQJ30_00080	COG0517	IMP dehydrogenase activity
CQJ30_00080	COG0516	GMP reductase activity
CQJ30_00105	COG1428	Deoxynucleoside kinase
CQJ30_00110	COG3858	chitin binding
CQJ30_00110	COG1388	LysM domain
CQJ30_00115	COG0590	tRNA wobble adenosine to inosine editing
CQJ30_00125	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
CQJ30_00130	COG0718	Binds to DNA and alters its conformation. May be involved in regulation of gene expression, nucleoid organization and DNA protection
CQJ30_00135	COG0353	May play a role in DNA repair. It seems to be involved in an RecBC-independent recombinational process of DNA repair. It may act with RecF and RecO
CQJ30_00165	COG0125	Phosphorylation of dTMP to form dTDP in both de novo and salvage pathways of dTTP synthesis
CQJ30_00170	COG3870	Protein conserved in bacteria
CQJ30_00175	COG1728	Protein conserved in bacteria
CQJ30_00180	COG0470	DNA polymerase III
CQJ30_00185	COG1774	PSP1 C-terminal conserved region
CQJ30_00190	COG4467	Involved in initiation control of chromosome replication
CQJ30_00195	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
CQJ30_00200	COG2827	Endonuclease containing a URI domain
CQJ30_00205	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
CQJ30_00210	COG2002	toxin-antitoxin pair type II binding
CQJ30_00235	COG0084	hydrolase, TatD family'
CQJ30_00240	COG3583	domain protein
CQJ30_00240	COG3584	3D domain protein
CQJ30_00245	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
CQJ30_00250	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
CQJ30_00260	COG4466	Protein conserved in bacteria
CQJ30_00270	COG1947	Catalyzes the phosphorylation of the position 2 hydroxy group of 4-diphosphocytidyl-2C-methyl-D-erythritol
CQJ30_00275	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
CQJ30_00280	COG2088	sporulation resulting in formation of a cellular spore
CQJ30_00285	COG1207	Catalyzes the last two sequential reactions in the de novo biosynthetic pathway for UDP-N-acetylglucosamine (UDP- GlcNAc). The C-terminal domain catalyzes the transfer of acetyl group from acetyl coenzyme A to glucosamine-1-phosphate (GlcN-1-P) to produce N-acetylglucosamine-1-phosphate (GlcNAc-1-P), which is converted into UDP-GlcNAc by the transfer of uridine 5- monophosphate (from uridine 5-triphosphate), a reaction catalyzed by the N-terminal domain
CQJ30_00290	COG0462	Involved in the biosynthesis of the central metabolite phospho-alpha-D-ribosyl-1-pyrophosphate (PRPP) via the transfer of pyrophosphoryl group from ATP to 1-hydroxyl of ribose-5-phosphate (Rib-5-P)
CQJ30_00295	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
CQJ30_00300	COG0193	aminoacyl-tRNA hydrolase activity
CQJ30_00310	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
CQJ30_00315	COG2002	toxin-antitoxin pair type II binding
CQJ30_00320	COG2244	polysaccharide biosynthetic process
CQJ30_00325	COG3956	TIGRFAM MazG family protein
CQJ30_00330	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
CQJ30_00350	COG1098	S1 RNA binding domain
CQJ30_00355	COG2208	phosphoserine phosphatase activity
CQJ30_00370	COG2304	oxidoreductase activity
CQJ30_00375	COG0515	serine threonine protein kinase
CQJ30_00390	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CQJ30_00400	COG1281	Redox regulated molecular chaperone. Protects both thermally unfolding and oxidatively damaged proteins from irreversible aggregation. Plays an important role in the bacterial defense system toward oxidative stress
CQJ30_00405	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CQJ30_00410	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
CQJ30_00415	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
CQJ30_00425	COG1396	sequence-specific DNA binding
CQJ30_00430	COG1190	Belongs to the class-II aminoacyl-tRNA synthetase family
CQJ30_00435	COG1609	Transcriptional regulator
CQJ30_00445	COG2182	Extracellular solute-binding protein
CQJ30_00450	COG1175	transmembrane transport
CQJ30_00455	COG3833	ABC-type maltose transport systems, permease component
CQJ30_00460	COG5521	maltodextrose utilization protein MalA
CQJ30_00465	COG1554	hydrolase, family 65, central catalytic
CQJ30_00550	COG3880	PFAM UvrB UvrC protein
CQJ30_00555	COG3869	Catalyzes the specific phosphorylation of arginine residues in
CQJ30_00560	COG0542	response to heat
CQJ30_00565	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
CQJ30_00570	COG4956	integral membrane protein (PIN domain superfamily)
CQJ30_00575	COG1211	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase activity
CQJ30_00580	COG0245	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase activity
CQJ30_00585	COG0008	Catalyzes the attachment of glutamate to tRNA(Glu) in a two-step reaction glutamate is first activated by ATP to form Glu-AMP and then transferred to the acceptor end of tRNA(Glu)
CQJ30_00590	COG1045	serine acetyltransferase
CQJ30_00595	COG0215	cysteine-tRNA ligase activity
CQJ30_00600	COG1939	Involved in correct processing of both the 5' and 3' ends of 23S rRNA precursor. Processes 30S rRNA precursor transcript even in absence of ribonuclease 3 (Rnc)
CQJ30_00605	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CQJ30_00610	COG3688	RNA-binding protein containing a PIN domain
CQJ30_00620	COG0267	Belongs to the bacterial ribosomal protein bL33 family
CQJ30_00625	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CQJ30_00630	COG0250	Participates in transcription elongation, termination and antitermination
CQJ30_00640	COG0081	regulation of translation
CQJ30_00645	COG0244	Forms part of the ribosomal stalk, playing a central role in the interaction of the ribosome with GTP-bound translation factors
CQJ30_00650	COG0222	ribosome binding
CQJ30_00655	COG2813	Specifically methylates the guanine in position
CQJ30_00660	COG0085	RNA polymerase activity
CQJ30_00665	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
CQJ30_00670	COG1358	cellular component organization or biogenesis
CQJ30_00675	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
CQJ30_00680	COG0049	tRNA binding
CQJ30_00685	COG0480	Catalyzes the GTP-dependent ribosomal translocation step during translation elongation. During this step, the ribosome changes from the pre-translocational (PRE) to the post- translocational (POST) state as the newly formed A-site-bound peptidyl-tRNA and P-site-bound deacylated tRNA move to the P and E sites, respectively. Catalyzes the coordinated movement of the two tRNA molecules, the mRNA and conformational changes in the ribosome
CQJ30_00690	COG0050	This protein promotes the GTP-dependent binding of aminoacyl-tRNA to the A-site of ribosomes during protein biosynthesis
CQJ30_00695	COG0051	transcription antitermination factor activity, RNA binding
CQJ30_00700	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
CQJ30_00705	COG0088	Forms part of the polypeptide exit tunnel
CQJ30_00710	COG0089	rRNA binding
CQJ30_00715	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
CQJ30_00720	COG0185	Protein S19 forms a complex with S13 that binds strongly to the 16S ribosomal RNA
CQJ30_00725	COG0091	The globular domain of the protein is located near the polypeptide exit tunnel on the outside of the subunit, while an extended beta-hairpin is found that lines the wall of the exit tunnel in the center of the 70S ribosome
CQJ30_00730	COG0092	Binds the lower part of the 30S subunit head. Binds mRNA in the 70S ribosome, positioning it for translation
CQJ30_00735	COG0197	Binds 23S rRNA and is also seen to make contacts with the A and possibly P site tRNAs
CQJ30_00740	COG0255	Belongs to the universal ribosomal protein uL29 family
CQJ30_00750	COG0093	Binds to 23S rRNA. Forms part of two intersubunit bridges in the 70S ribosome
CQJ30_00755	COG0198	One of the proteins that surrounds the polypeptide exit tunnel on the outside of the subunit
CQJ30_00760	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
CQJ30_00770	COG0096	One of the primary rRNA binding proteins, it binds directly to 16S rRNA central domain where it helps coordinate assembly of the platform of the 30S subunit
CQJ30_00775	COG0097	This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7 L12 stalk, and near the tRNA binding site of the peptidyltransferase center
CQJ30_00785	COG0098	Located at the back of the 30S subunit body where it stabilizes the conformation of the head with respect to the body
CQJ30_00790	COG1841	ribosomal large subunit assembly
CQJ30_00795	COG0200	Binds to the 23S rRNA
CQJ30_00800	COG0201	protein transport
CQJ30_00805	COG0563	adenylate kinase activity
CQJ30_00810	COG2163	COG2163 Ribosomal protein L14E L6E L27E
CQJ30_00815	COG0361	One of the essential components for the initiation of protein synthesis. Stabilizes the binding of IF-2 and IF-3 on the 30S subunit to which N-formylmethionyl-tRNA(fMet) subsequently binds. Helps modulate mRNA selection, yielding the 30S pre- initiation complex (PIC). Upon addition of the 50S ribosomal subunit IF-1, IF-2 and IF-3 are released leaving the mature 70S translation initation complex
CQJ30_00820	COG0257	Belongs to the bacterial ribosomal protein bL36 family
CQJ30_00825	COG0099	Located at the top of the head of the 30S subunit, it contacts several helices of the 16S rRNA. In the 70S ribosome it contacts the 23S rRNA (bridge B1a) and protein L5 of the 50S subunit (bridge B1b), connecting the 2 subunits
CQJ30_00830	COG0100	Located on the platform of the 30S subunit, it bridges several disparate RNA helices of the 16S rRNA. Forms part of the Shine-Dalgarno cleft in the 70S ribosome
CQJ30_00835	COG0202	RNA polymerase activity
CQJ30_00840	COG0203	ribosomal protein L17
CQJ30_00850	COG1122	ATPase activity
CQJ30_00855	COG1122	ATPase activity
CQJ30_00865	COG0101	tRNA pseudouridine synthase activity
CQJ30_00870	COG0102	This protein is one of the early assembly proteins of the 50S ribosomal subunit, although it is not seen to bind rRNA by itself. It is important during the early stages of 50S assembly
CQJ30_00875	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
CQJ30_00880	COG0582	viral genome integration into host DNA
CQJ30_00890	COG0596	Alpha beta hydrolase
CQJ30_00895	COG3773	Cell wall hydrolase
CQJ30_00905	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CQJ30_00915	COG0243	molybdopterin cofactor binding
CQJ30_00955	COG5577	PFAM Coat F domain
CQJ30_00980	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CQJ30_00995	COG2323	membrane
CQJ30_01075	COG1393	Belongs to the ArsC family
CQJ30_01085	COG0714	Associated with various cellular activities
CQJ30_01110	COG5577	PFAM Coat F domain
CQJ30_01115	COG1063	alcohol dehydrogenase
CQJ30_01125	COG5577	PFAM Coat F domain
CQJ30_01130	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
CQJ30_01135	COG0697	spore germination
CQJ30_01165	COG0103	maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
CQJ30_01170	COG1914	H( )-stimulated, divalent metal cation uptake system
CQJ30_01180	COG1263	PTS System
CQJ30_01180	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CQJ30_01185	COG2188	Transcriptional regulator
CQJ30_01205	COG1011	Hydrolase
CQJ30_01210	COG1737	Transcriptional regulator
CQJ30_01215	COG0747	negative chemotaxis
CQJ30_01225	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CQJ30_01230	COG0444	Belongs to the ABC transporter superfamily
CQJ30_01270	COG4974	Belongs to the 'phage' integrase family
CQJ30_01275	COG4974	Belongs to the 'phage' integrase family
CQJ30_01295	COG2188	Transcriptional regulator
CQJ30_01305	COG0860	N-Acetylmuramoyl-L-alanine amidase
CQJ30_01310	COG0489	protein tyrosine kinase activity
CQJ30_01330	COG2194	sulfuric ester hydrolase activity
CQJ30_01335	COG0726	polysaccharide deacetylase
CQJ30_01410	COG1595	DNA-templated transcription, initiation
CQJ30_01415	COG5662	AntiSigma factor
CQJ30_01420	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
CQJ30_01425	COG4856	YbbR-like protein
CQJ30_01430	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CQJ30_01440	COG0449	glutamine-fructose-6-phosphate transaminase (isomerizing) activity
CQJ30_01445	COG1473	amidohydrolase
CQJ30_01460	COG1473	amidohydrolase
CQJ30_01465	COG2978	secondary active p-aminobenzoyl-glutamate transmembrane transporter activity
CQJ30_01475	COG1395	domain, Protein
CQJ30_01505	COG1476	TRANSCRIPTIONal
CQJ30_01515	COG0561	phosphatase activity
CQJ30_01520	COG2133	pyrroloquinoline quinone binding
CQJ30_01525	COG5002	protein histidine kinase activity
CQJ30_01530	COG0745	RESPONSE REGULATOR receiver
CQJ30_01535	COG1136	(ABC) transporter
CQJ30_01540	COG0577	efflux transmembrane transporter activity
CQJ30_01550	COG1309	transcriptional regulator
CQJ30_01560	COG1131	(ABC) transporter
CQJ30_01565	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CQJ30_01570	COG1522	sequence-specific DNA binding
CQJ30_01585	COG0500	methyltransferase
CQJ30_01615	COG2814	Major facilitator Superfamily
CQJ30_01620	COG0583	DNA-binding transcription factor activity
CQJ30_01650	COG0242	peptide deformylase activity
CQJ30_01690	COG1940	carbohydrate kinase activity
CQJ30_01700	COG0561	phosphatase activity
CQJ30_01730	COG1725	Transcriptional regulator
CQJ30_01740	COG3226	Transcriptional regulator
CQJ30_01750	COG3773	Cell wall hydrolase
CQJ30_01760	COG3655	Transcriptional regulator
CQJ30_01775	COG1328	CTP reductase activity
CQJ30_01830	COG0517	IMP dehydrogenase activity
CQJ30_01830	COG1125	glycine betaine transport
CQJ30_01835	COG1174	glycine betaine transport
CQJ30_01855	COG3328	transposase activity
CQJ30_01870	COG1113	amino acid transport
CQJ30_01880	COG1028	Short-chain dehydrogenase reductase Sdr
CQJ30_01885	COG1960	acyl-CoA dehydrogenase activity
CQJ30_01900	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
CQJ30_01910	COG0431	NADPH-dependent FMN reductase
CQJ30_01920	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
CQJ30_01925	COG1737	Transcriptional regulator
CQJ30_01950	COG3695	enzyme binding
CQJ30_01970	COG3328	transposase activity
CQJ30_01980	COG1309	transcriptional regulator
CQJ30_01985	COG0475	glutathione-regulated potassium exporter activity
CQJ30_02000	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CQJ30_02005	COG0716	FMN binding
CQJ30_02010	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CQJ30_02020	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CQJ30_02020	COG1321	iron dependent repressor
CQJ30_02035	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CQJ30_02035	COG0425	Belongs to the sulfur carrier protein TusA family
CQJ30_02040	COG2210	Belongs to the sulfur carrier protein TusA family
CQJ30_02045	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CQJ30_02045	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CQJ30_02050	COG0425	Belongs to the sulfur carrier protein TusA family
CQJ30_02055	COG0730	response to heat
CQJ30_02060	COG1937	Protein conserved in bacteria
CQJ30_02065	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CQJ30_02090	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CQJ30_02110	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
CQJ30_02130	COG0737	Belongs to the 5'-nucleotidase family
CQJ30_02175	COG1250	3-hydroxyacyl-CoA dehydrogenase
CQJ30_02190	COG2145	Catalyzes the phosphorylation of the hydroxyl group of 4-methyl-5-beta-hydroxyethylthiazole (THZ)
CQJ30_02195	COG0351	phosphomethylpyrimidine kinase
CQJ30_02205	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
CQJ30_02210	COG0783	Belongs to the Dps family
CQJ30_02215	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CQJ30_02240	COG4149	molybdate abc transporter
CQJ30_02245	COG0725	ABC transporter, periplasmic molybdate-binding protein
CQJ30_02250	COG0521	Mo-molybdopterin cofactor biosynthetic process
CQJ30_02255	COG0746	molybdenum cofactor guanylyltransferase activity
CQJ30_02260	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CQJ30_02265	COG1763	Mo-molybdopterin cofactor biosynthetic process
CQJ30_02275	COG0314	molybdopterin synthase activity
CQJ30_02280	COG0303	'Molybdopterin
CQJ30_02285	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
CQJ30_02290	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
CQJ30_02310	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
CQJ30_02315	COG3711	transcriptional antiterminator
CQJ30_02315	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CQJ30_02325	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CQJ30_02330	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CQJ30_02335	COG1447	Phosphotransferase system cellobiose-specific component IIA
CQJ30_02340	COG2723	6-phospho-beta-galactosidase activity
CQJ30_02350	COG3344	reverse transcriptase
CQJ30_02390	COG2181	nitrate reductase activity
CQJ30_02395	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
CQJ30_02400	COG1140	nitrate reductase beta subunit
CQJ30_02405	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
CQJ30_02410	COG2223	nitrite transmembrane transporter activity
CQJ30_02415	COG2814	Major facilitator Superfamily
CQJ30_02420	COG0390	transport system, permease component
CQJ30_02425	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
CQJ30_02435	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
CQJ30_02440	COG2224	Isocitrate lyase
CQJ30_02445	COG0840	transmembrane signaling receptor activity
CQJ30_02450	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CQJ30_02455	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CQJ30_02460	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CQJ30_02460	COG0551	DNA topoisomerase type I activity
CQJ30_02465	COG1846	Transcriptional regulator
CQJ30_02500	COG1304	FMN binding
CQJ30_02505	COG5577	PFAM Coat F domain
CQJ30_02520	COG5577	PFAM Coat F domain
CQJ30_02530	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
CQJ30_02540	COG2340	Cysteine-rich secretory protein family
CQJ30_02555	COG1346	cytolysis
CQJ30_02560	COG1380	Effector of murein hydrolase LrgA
CQJ30_02565	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
CQJ30_02580	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
CQJ30_02590	COG0586	Pfam SNARE associated Golgi protein
CQJ30_02595	COG1968	undecaprenyl-diphosphatase activity
CQJ30_02600	COG0745	RESPONSE REGULATOR receiver
CQJ30_02605	COG3850	Histidine kinase
CQJ30_02605	COG5002	protein histidine kinase activity
CQJ30_02610	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
CQJ30_02615	COG0840	transmembrane signaling receptor activity
CQJ30_02620	COG3328	transposase activity
CQJ30_02630	COG3842	ATPase activity
CQJ30_02635	COG1176	ABC-type spermidine putrescine transport system, permease component I
CQJ30_02640	COG1177	transmembrane transport
CQJ30_02645	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
CQJ30_02655	COG4086	secreted protein
CQJ30_02670	COG0306	phosphate transporter
CQJ30_02675	COG1392	Phosphate transport regulator
CQJ30_02680	COG1686	Belongs to the peptidase S11 family
CQJ30_02685	COG3973	AAA domain
CQJ30_02690	COG0002	Catalyzes the NADPH-dependent reduction of N-acetyl-5- glutamyl phosphate to yield N-acetyl-L-glutamate 5-semialdehyde
CQJ30_02695	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
CQJ30_02700	COG0548	Belongs to the acetylglutamate kinase family. ArgB subfamily
CQJ30_02705	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CQJ30_02710	COG0505	Belongs to the CarA family
CQJ30_02720	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
CQJ30_02725	COG0137	argininosuccinate synthase activity
CQJ30_02730	COG0165	Argininosuccinate lyase
CQJ30_02745	COG4145	pantothenate transmembrane transporter activity
CQJ30_02750	COG0812	UDP-N-acetylmuramate dehydrogenase activity
CQJ30_02765	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
CQJ30_02775	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
CQJ30_02785	COG1069	ribulokinase activity
CQJ30_02790	COG0235	Class ii aldolase
CQJ30_02795	COG2160	L-arabinose isomerase activity
CQJ30_02800	COG3957	D-xylulose 5-phosphate D-fructose 6-phosphate phosphoketolase
CQJ30_02805	COG0628	permease
CQJ30_02810	COG1609	Transcriptional regulator
CQJ30_02815	COG0371	Dehydrogenase
CQJ30_02820	COG0371	Dehydrogenase
CQJ30_02825	COG4213	ABC transporter substrate-binding protein
CQJ30_02835	COG4214	carbohydrate transport
CQJ30_02840	COG1940	carbohydrate kinase activity
CQJ30_02855	COG1070	Carbohydrate kinase
CQJ30_02860	COG3507	Belongs to the glycosyl hydrolase 43 family
CQJ30_02865	COG2972	Histidine kinase
CQJ30_02870	COG2207	Transcriptional regulator
CQJ30_02880	COG1175	transmembrane transport
CQJ30_02890	COG0726	polysaccharide deacetylase
CQJ30_02900	COG5578	integral membrane protein
CQJ30_02910	COG0667	Aldo Keto reductase
CQJ30_02915	COG1309	transcriptional regulator
CQJ30_02925	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CQJ30_02945	COG1028	Short-chain dehydrogenase reductase Sdr
CQJ30_03000	COG3189	MarR family transcriptional regulator
CQJ30_03005	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
CQJ30_03015	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
CQJ30_03020	COG4468	UDPglucose--hexose-1-phosphate uridylyltransferase
CQJ30_03025	COG2017	converts alpha-aldose to the beta-anomer
CQJ30_03030	COG1609	Transcriptional regulator
CQJ30_03035	COG3842	ATPase activity
CQJ30_03040	COG2508	Transcriptional regulator
CQJ30_03050	COG4915	5-bromo-4-chloroindolyl phosphate hydrolysis protein
CQJ30_03055	COG3853	Toxic anion resistance protein (TelA)
CQJ30_03075	COG0772	Belongs to the SEDS family
CQJ30_03085	COG1253	flavin adenine dinucleotide binding
CQJ30_03090	COG2239	Acts as a magnesium transporter
CQJ30_03100	COG1181	Belongs to the D-alanine--D-alanine ligase family
CQJ30_03105	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
CQJ30_03115	COG0513	Belongs to the DEAD box helicase family
CQJ30_03120	COG3402	PFAM membrane-flanked domain
CQJ30_03125	COG3428	Bacterial PH domain
CQJ30_03130	COG0705	Rhomboid family
CQJ30_03135	COG0736	holo-[acyl-carrier-protein] synthase activity
CQJ30_03145	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
CQJ30_03150	COG0864	Transcriptional regulator
CQJ30_03155	COG2337	Toxic component of a toxin-antitoxin (TA) module
CQJ30_03160	COG2183	response to ionizing radiation
CQJ30_03170	COG3091	SprT-like family
CQJ30_03240	COG0533	Required for the formation of a threonylcarbamoyl group on adenosine at position 37 (t(6)A37) in tRNAs that read codons beginning with adenine. Is involved in the transfer of the threonylcarbamoyl moiety of threonylcarbamoyl-AMP (TC-AMP) to the N6 group of A37, together with TsaE and TsaB. TsaD likely plays a direct catalytic role in this reaction
CQJ30_03245	COG0456	acetyltransferase
CQJ30_03250	COG1214	PFAM Peptidase M22, glycoprotease
CQJ30_03255	COG0802	atpase or kinase
CQJ30_03260	COG0488	(ABC) transporter
CQJ30_03265	COG2344	Modulates transcription in response to changes in cellular NADH NAD( ) redox state
CQJ30_03270	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CQJ30_03275	COG0805	protein transport
CQJ30_03280	COG1266	CAAX protease self-immunity
CQJ30_03285	COG0234	Binds to Cpn60 in the presence of Mg-ATP and suppresses the ATPase activity of the latter
CQJ30_03290	COG0459	protein refolding
CQJ30_03295	COG3842	ATPase activity
CQJ30_03300	COG1175	transmembrane transport
CQJ30_03315	COG0584	glycerophosphoryl diester phosphodiesterase
CQJ30_03320	COG1309	transcriptional regulator
CQJ30_03330	COG1132	(ABC) transporter
CQJ30_03350	COG1396	sequence-specific DNA binding
CQJ30_03360	COG2814	Major facilitator Superfamily
CQJ30_03375	COG1263	PTS System
CQJ30_03375	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CQJ30_03380	COG3711	transcriptional antiterminator
CQJ30_03385	COG2190	(PTS) system
CQJ30_03390	COG2252	PERMEase
CQJ30_03395	COG0114	fumarate hydratase activity
CQJ30_03410	COG0714	Associated with various cellular activities
CQJ30_03415	COG1721	protein (some members contain a von Willebrand factor type A (vWA) domain
CQJ30_03420	COG1305	Transglutaminase-like
CQJ30_03425	COG0518	GMP synthase (glutamine-hydrolyzing) activity
CQJ30_03425	COG0519	Catalyzes the synthesis of GMP from XMP
CQJ30_03445	COG2252	PERMEase
CQJ30_03450	COG3711	transcriptional antiterminator
CQJ30_03455	COG2190	(PTS) system
CQJ30_03455	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CQJ30_03455	COG1263	PTS System
CQJ30_03465	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CQJ30_03470	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
CQJ30_03480	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
CQJ30_03485	COG1470	cell adhesion involved in biofilm formation
CQJ30_03490	COG4496	protein, YerC YecD
CQJ30_03500	COG0210	DNA helicase
CQJ30_03505	COG0272	DNA ligase that catalyzes the formation of phosphodiester linkages between 5'-phosphoryl and 3'-hydroxyl groups in double-stranded DNA using NAD as a coenzyme and as the energy source for the reaction. It is essential for DNA replication and repair of damaged DNA
CQJ30_03510	COG4851	CamS sex pheromone cAM373 precursor
CQJ30_03515	COG0151	Belongs to the GarS family
CQJ30_03520	COG0138	bifunctional purine biosynthesis protein purh
CQJ30_03525	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
CQJ30_03530	COG0150	phosphoribosylformylglycinamidine cyclo-ligase activity
CQJ30_03535	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
CQJ30_03540	COG0046	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CQJ30_03545	COG0047	phosphoribosylformylglycinamidine synthase activity
CQJ30_03550	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
CQJ30_03555	COG0152	phosphoribosylaminoimidazolesuccinocarboxamide synthase activity
CQJ30_03560	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
CQJ30_03565	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
CQJ30_03570	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
CQJ30_03575	COG1080	General (non sugar-specific) component of the phosphoenolpyruvate-dependent sugar phosphotransferase system (sugar PTS). This major carbohydrate active-transport system catalyzes the phosphorylation of incoming sugar substrates concomitantly with their translocation across the cell membrane. Enzyme I transfers the phosphoryl group from phosphoenolpyruvate (PEP) to the phosphoryl carrier protein (HPr)
CQJ30_03575	COG0574	Belongs to the PEP-utilizing enzyme family
CQJ30_03580	COG5506	Protein of unknown function (DUF1694)
CQJ30_03585	COG0721	Allows the formation of correctly charged Asn-tRNA(Asn) or Gln-tRNA(Gln) through the transamidation of misacylated Asp- tRNA(Asn) or Glu-tRNA(Gln) in organisms which lack either or both of asparaginyl-tRNA or glutaminyl-tRNA synthetases. The reaction takes place in the presence of glutamine and ATP through an activated phospho-Asp-tRNA(Asn) or phospho-Glu-tRNA(Gln)
CQJ30_03590	COG0154	amidase activity
CQJ30_03605	COG0656	L-ascorbic acid biosynthetic process
CQJ30_03610	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
CQJ30_03615	COG1012	belongs to the aldehyde dehydrogenase family
CQJ30_03620	COG1597	lipid kinase activity
CQJ30_03640	COG4585	Histidine kinase
CQJ30_03645	COG2197	response regulator
CQJ30_03655	COG2200	EAL domain
CQJ30_03665	COG0577	efflux transmembrane transporter activity
CQJ30_03670	COG1136	(ABC) transporter
CQJ30_03680	COG0622	Phosphoesterase
CQJ30_03685	COG3328	transposase activity
CQJ30_03705	COG1309	transcriptional regulator
CQJ30_03710	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
CQJ30_03715	COG4152	abc transporter atp-binding protein
CQJ30_03720	COG1668	transmembrane transport
CQJ30_03735	COG1733	regulation of RNA biosynthetic process
CQJ30_03740	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CQJ30_03745	COG0431	NADPH-dependent FMN reductase
CQJ30_03810	COG0714	Associated with various cellular activities
CQJ30_03855	COG0640	Transcriptional regulator
CQJ30_03865	COG1609	Transcriptional regulator
CQJ30_03905	COG1619	proteins homologs of microcin C7 resistance protein MccF
CQJ30_03930	COG0840	transmembrane signaling receptor activity
CQJ30_03935	COG1012	belongs to the aldehyde dehydrogenase family
CQJ30_03940	COG1846	Transcriptional regulator
CQJ30_03945	COG0386	Belongs to the glutathione peroxidase family
CQJ30_03950	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CQJ30_03965	COG0346	lactoylglutathione lyase activity
CQJ30_03970	COG0662	Cupin 2, conserved barrel domain protein
CQJ30_03990	COG1966	Carbon starvation protein
CQJ30_03995	COG3279	Response regulator of the LytR AlgR family
CQJ30_04000	COG3275	phosphorelay sensor kinase activity
CQJ30_04005	COG3328	transposase activity
CQJ30_04020	COG1683	Conserved Protein
CQJ30_04030	COG1825	This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance
CQJ30_04050	COG0765	amino acid transport
CQJ30_04055	COG1126	abc transporter atp-binding protein
CQJ30_04070	COG0004	ammonium transporteR
CQJ30_04075	COG1404	Belongs to the peptidase S8 family
CQJ30_04085	COG1764	response to oxidative stress
CQJ30_04090	COG1272	protein, Hemolysin III
CQJ30_04095	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CQJ30_04125	COG2966	Psort location CytoplasmicMembrane, score
CQJ30_04135	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
CQJ30_04155	COG2404	hydrolase activity, acting on ester bonds
CQJ30_04160	COG3706	GGDEF domain
CQJ30_04160	COG5001	Diguanylate cyclase
CQJ30_04160	COG2203	Gaf domain
CQJ30_04160	COG4251	negative regulation of phosphorylation
CQJ30_04175	COG0745	RESPONSE REGULATOR receiver
CQJ30_04175	COG3706	GGDEF domain
CQJ30_04180	COG0534	Mate efflux family protein
CQJ30_04185	COG5002	protein histidine kinase activity
CQJ30_04225	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CQJ30_04230	COG0765	amino acid transport
CQJ30_04235	COG1126	abc transporter atp-binding protein
CQJ30_04245	COG0431	NADPH-dependent FMN reductase
CQJ30_04250	COG0488	(ABC) transporter
CQJ30_04260	COG3239	Fatty acid desaturase
CQJ30_04265	COG4585	Histidine kinase
CQJ30_04270	COG2197	response regulator
CQJ30_04280	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
CQJ30_04285	COG1882	Formate acetyltransferase
CQJ30_04290	COG2244	polysaccharide biosynthetic process
CQJ30_04300	COG0861	Integral membrane protein TerC family
CQJ30_04310	COG0024	Methionine aminopeptidase
CQJ30_04320	COG4840	Belongs to the UPF0435 family
CQJ30_04325	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CQJ30_04335	COG1295	ribonuclease BN
CQJ30_04340	COG2217	Heavy metal translocating P-type atpase
CQJ30_04345	COG0477	Major facilitator Superfamily
CQJ30_04370	COG2376	Dihydroxyacetone kinase
CQJ30_04375	COG1461	Dihydroxyacetone kinase
CQJ30_04385	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
CQJ30_04420	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
CQJ30_04460	COG0785	Cytochrome C biogenesis protein
CQJ30_04465	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CQJ30_04475	COG5002	protein histidine kinase activity
CQJ30_04485	COG4372	Transposase
CQJ30_04505	COG0425	Belongs to the sulfur carrier protein TusA family
CQJ30_04505	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CQJ30_04510	COG2210	Belongs to the sulfur carrier protein TusA family
CQJ30_04515	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CQJ30_04515	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CQJ30_04520	COG0425	Belongs to the sulfur carrier protein TusA family
CQJ30_04525	COG0730	response to heat
CQJ30_04530	COG1937	Protein conserved in bacteria
CQJ30_04535	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CQJ30_04540	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CQJ30_04575	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CQJ30_04590	COG4372	Transposase
CQJ30_04625	COG0785	Cytochrome C biogenesis protein
CQJ30_04630	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CQJ30_04635	COG0745	RESPONSE REGULATOR receiver
CQJ30_04640	COG2205	protein histidine kinase activity
CQJ30_04645	COG3858	chitin binding
CQJ30_04645	COG1388	LysM domain
CQJ30_04655	COG1388	LysM domain
CQJ30_04655	COG0791	NLP P60 protein
CQJ30_04660	COG2210	Belongs to the sulfur carrier protein TusA family
CQJ30_04670	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CQJ30_04670	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CQJ30_04675	COG2226	methyltransferase
CQJ30_04685	COG1937	Protein conserved in bacteria
CQJ30_04690	COG0425	Belongs to the sulfur carrier protein TusA family
CQJ30_04695	COG2210	Belongs to the sulfur carrier protein TusA family
CQJ30_04705	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CQJ30_04710	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CQJ30_04710	COG0425	Belongs to the sulfur carrier protein TusA family
CQJ30_04715	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CQJ30_04715	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CQJ30_04720	COG0425	Belongs to the sulfur carrier protein TusA family
CQJ30_04725	COG0730	response to heat
CQJ30_04760	COG0681	Belongs to the peptidase S26 family
CQJ30_04815	COG0306	phosphate transporter
CQJ30_04830	COG1879	ABC-type sugar transport system periplasmic component
CQJ30_04850	COG0562	UDP-galactopyranose mutase
CQJ30_04855	COG0620	Catalyzes the transfer of a methyl group from 5- methyltetrahydrofolate to homocysteine resulting in methionine formation
CQJ30_04865	COG1476	TRANSCRIPTIONal
CQJ30_04885	COG1834	amidinotransferase
CQJ30_04910	COG4585	Histidine kinase
CQJ30_04915	COG2197	response regulator
CQJ30_04920	COG1131	(ABC) transporter
CQJ30_04935	COG4129	membrane
CQJ30_04945	COG1725	Transcriptional regulator
CQJ30_04950	COG1131	(ABC) transporter
CQJ30_04960	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CQJ30_04965	COG3002	Belongs to the UPF0753 family
CQJ30_04970	COG5609	conserved protein (DUF2294)
CQJ30_04975	COG3328	transposase activity
CQJ30_04980	COG4948	Mandelate Racemase Muconate Lactonizing
CQJ30_04985	COG0596	Alpha beta hydrolase
CQJ30_04995	COG1169	isochorismate synthase
CQJ30_05000	COG1978	Selenoprotein B, glycine betaine sarcosine D-proline reductase family
CQJ30_05005	COG0534	Mate efflux family protein
CQJ30_05015	COG1067	ATP-dependent peptidase activity
CQJ30_05020	COG1511	domain protein
CQJ30_05025	COG2197	response regulator
CQJ30_05040	COG2200	EAL domain
CQJ30_05060	COG0175	sulfate reduction
CQJ30_05070	COG0369	Component of the sulfite reductase complex that catalyzes the 6-electron reduction of sulfite to sulfide. This is one of several activities required for the biosynthesis of L- cysteine from sulfate. The flavoprotein component catalyzes the electron flow from NADPH - FAD - FMN to the hemoprotein component
CQJ30_05075	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
CQJ30_05090	COG2046	Belongs to the sulfate adenylyltransferase family
CQJ30_05095	COG0529	Catalyzes the synthesis of activated sulfate
CQJ30_05100	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
CQJ30_05105	COG0512	Glutamine amidotransferase of anthranilate synthase
CQJ30_05105	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CQJ30_05110	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
CQJ30_05115	COG0134	indole-3-glycerol-phosphate synthase activity
CQJ30_05125	COG0133	tryptophan synthase activity
CQJ30_05130	COG0159	tryptophan synthase activity
CQJ30_05135	COG0311	Catalyzes the hydrolysis of glutamine to glutamate and ammonia as part of the biosynthesis of pyridoxal 5'-phosphate. The resulting ammonia molecule is channeled to the active site of PdxS
CQJ30_05140	COG0214	Catalyzes the formation of pyridoxal 5'-phosphate from ribose 5-phosphate (RBP), glyceraldehyde 3-phosphate (G3P) and ammonia. The ammonia is provided by the PdxT subunit. Can also use ribulose 5-phosphate and dihydroxyacetone phosphate as substrates, resulting from enzyme-catalyzed isomerization of RBP and G3P, respectively
CQJ30_05145	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CQJ30_05175	COG0697	spore germination
CQJ30_05180	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
CQJ30_05185	COG0109	protoheme IX farnesyltransferase activity
CQJ30_05190	COG1309	transcriptional regulator
CQJ30_05200	COG2814	Major facilitator Superfamily
CQJ30_05215	COG1174	glycine betaine transport
CQJ30_05220	COG3290	protein histidine kinase activity
CQJ30_05225	COG0667	Aldo Keto reductase
CQJ30_05235	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
CQJ30_05240	COG0789	Transcriptional regulator
CQJ30_05245	COG1294	oxidase, subunit
CQJ30_05250	COG1271	oxidase subunit
CQJ30_05255	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CQJ30_05260	COG1271	oxidase subunit
CQJ30_05265	COG1294	oxidase, subunit
CQJ30_05270	COG4988	ABC transporter
CQJ30_05275	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
CQJ30_05285	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CQJ30_05295	COG0515	serine threonine protein kinase
CQJ30_05305	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
CQJ30_05310	COG0573	inorganic phosphate transmembrane transporter activity
CQJ30_05315	COG0581	inorganic phosphate transmembrane transporter activity
CQJ30_05320	COG1117	ATPase-coupled phosphate ion transmembrane transporter activity
CQJ30_05325	COG2207	Transcriptional regulator
CQJ30_05340	COG0673	inositol 2-dehydrogenase activity
CQJ30_05350	COG0673	inositol 2-dehydrogenase activity
CQJ30_05360	COG1115	amino acid carrier protein
CQJ30_05375	COG2137	regulation of response to DNA damage stimulus
CQJ30_05390	COG1988	membrane-bound metal-dependent
CQJ30_05395	COG1194	a g-specific adenine glycosylase
CQJ30_05400	COG1028	Short-chain dehydrogenase reductase Sdr
CQJ30_05410	COG3557	Belongs to the UPF0374 family
CQJ30_05415	COG1132	(ABC) transporter
CQJ30_05420	COG3457	Alanine racemase
CQJ30_05425	COG0351	phosphomethylpyrimidine kinase
CQJ30_05430	COG4129	membrane
CQJ30_05440	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
CQJ30_05450	COG2096	Adenosyltransferase
CQJ30_05455	COG0735	belongs to the Fur family
CQJ30_05580	COG1388	LysM domain
CQJ30_05590	COG3437	response regulator, receiver
CQJ30_05595	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CQJ30_05600	COG1595	DNA-templated transcription, initiation
CQJ30_05610	COG2031	fatty acid transporter
CQJ30_05630	COG2378	regulation of single-species biofilm formation
CQJ30_05660	COG1846	Transcriptional regulator
CQJ30_05690	COG0653	protein targeting
CQJ30_05710	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
CQJ30_05715	COG4443	Transcriptional Coactivator p15 (PC4)
CQJ30_05725	COG1966	Carbon starvation protein
CQJ30_05730	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CQJ30_05735	COG0446	pyridine nucleotide-disulphide oxidoreductase
CQJ30_05740	COG1937	Protein conserved in bacteria
CQJ30_05745	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CQJ30_05755	COG0514	ATP-dependent DNA helicase (RecQ)
CQJ30_05775	COG0745	RESPONSE REGULATOR receiver
CQJ30_05780	COG5002	protein histidine kinase activity
CQJ30_05795	COG0428	transporter
CQJ30_05800	COG0084	hydrolase, TatD family'
CQJ30_05815	COG5002	protein histidine kinase activity
CQJ30_05825	COG0420	3'-5' exonuclease activity
CQJ30_05830	COG0419	ATPase involved in DNA repair
CQJ30_05840	COG2226	methyltransferase
CQJ30_05845	COG2076	Multidrug Resistance protein
CQJ30_05850	COG2076	Multidrug Resistance protein
CQJ30_05865	COG4990	cell redox homeostasis
CQJ30_05870	COG2603	Catalyzes the transfer of selenium from selenophosphate for conversion of 2-thiouridine to 2-selenouridine at the wobble position in tRNA
CQJ30_05885	COG0517	IMP dehydrogenase activity
CQJ30_05890	COG0531	amino acid
CQJ30_05920	COG0693	protein deglycase activity
CQJ30_05920	COG0753	catalase activity
CQJ30_05925	COG2205	protein histidine kinase activity
CQJ30_05945	COG1131	(ABC) transporter
CQJ30_05970	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
CQJ30_05975	COG0573	inorganic phosphate transmembrane transporter activity
CQJ30_05980	COG0581	inorganic phosphate transmembrane transporter activity
CQJ30_05990	COG0704	Plays a role in the regulation of phosphate uptake
CQJ30_05995	COG0861	Integral membrane protein TerC family
CQJ30_06000	COG0444	Belongs to the ABC transporter superfamily
CQJ30_06005	COG4608	Belongs to the ABC transporter superfamily
CQJ30_06010	COG0747	negative chemotaxis
CQJ30_06015	COG0601	transmembrane transport
CQJ30_06020	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CQJ30_06075	COG2707	UPF0756 membrane protein
CQJ30_06085	COG0789	Transcriptional regulator
CQJ30_06090	COG0018	arginyl-trna synthetase
CQJ30_06105	COG4606	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CQJ30_06110	COG4605	iron ion homeostasis
CQJ30_06115	COG4604	ABC transporter, ATP-binding protein
CQJ30_06120	COG4607	ABC-type enterochelin transport system periplasmic component
CQJ30_06130	COG2706	6-phosphogluconolactonase activity
CQJ30_06135	COG3104	oligopeptide transport
CQJ30_06145	COG0656	L-ascorbic acid biosynthetic process
CQJ30_06150	COG0564	pseudouridine synthase activity
CQJ30_06185	COG0583	DNA-binding transcription factor activity
CQJ30_06215	COG2186	Transcriptional regulator
CQJ30_06220	COG0247	lactate metabolic process
CQJ30_06225	COG1139	Iron-sulfur cluster binding protein
CQJ30_06230	COG1556	Lactate utilization protein
CQJ30_06245	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CQJ30_06250	COG5002	protein histidine kinase activity
CQJ30_06255	COG1826	Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin-arginine motif in their signal peptide across membranes
CQJ30_06275	COG0189	ligase activity
CQJ30_06280	COG4399	Belongs to the UPF0754 family
CQJ30_06285	COG3679	Belongs to the UPF0342 family
CQJ30_06290	COG0561	phosphatase activity
CQJ30_06295	COG0318	PFAM AMP-dependent synthetase and ligase
CQJ30_06305	COG1252	NADH dehydrogenase
CQJ30_06315	COG0420	3'-5' exonuclease activity
CQJ30_06320	COG4717	serine-type aminopeptidase activity
CQJ30_06325	COG3481	metal-dependent phosphohydrolase, HD sub domain
CQJ30_06335	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
CQJ30_06360	COG1846	Transcriptional regulator
CQJ30_06370	COG0537	adenosine 5'-monophosphoramidase activity
CQJ30_06375	COG1131	(ABC) transporter
CQJ30_06380	COG4473	ABC transporter
CQJ30_06390	COG1473	amidohydrolase
CQJ30_06400	COG0407	Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III
CQJ30_06415	COG1234	tRNA 3'-trailer cleavage
CQJ30_06420	COG0095	Lipoate-protein ligase
CQJ30_06440	COG0501	Belongs to the peptidase M48B family
CQJ30_06450	COG4903	ComK protein
CQJ30_06460	COG0398	Pfam SNARE associated Golgi protein
CQJ30_06465	COG3857	The heterodimer acts as both an ATP-dependent DNA helicase and an ATP-dependent, dual-direction single-stranded exonuclease. Recognizes the chi site generating a DNA molecule suitable for the initiation of homologous recombination
CQJ30_06470	COG1074	ATP-dependent DNA helicase activity
CQJ30_06535	COG0366	Alpha amylase catalytic
CQJ30_06535	COG1874	Beta-galactosidase
CQJ30_06540	COG1666	GTP binding
CQJ30_06550	COG1307	EDD domain protein, DegV family
CQJ30_06555	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CQJ30_06565	COG0561	phosphatase activity
CQJ30_06570	COG1073	alpha beta
CQJ30_06575	COG2151	metal-sulfur cluster biosynthetic enzyme
CQJ30_06590	COG2267	carboxylic ester hydrolase activity
CQJ30_06600	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CQJ30_06605	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
CQJ30_06620	COG0180	Tryptophanyl-tRNA synthetase
CQJ30_06625	COG1393	Belongs to the ArsC family
CQJ30_06630	COG4862	establishment of competence for transformation
CQJ30_06635	COG4469	Competence protein
CQJ30_06640	COG1164	Oligoendopeptidase f
CQJ30_06655	COG2346	COG2346, Truncated hemoglobins
CQJ30_06660	COG0741	lytic transglycosylase activity
CQJ30_06665	COG4116	CYTH
CQJ30_06670	COG2357	RelA SpoT domain protein
CQJ30_06675	COG0061	Involved in the regulation of the intracellular balance of NAD and NADP, and is a key enzyme in the biosynthesis of NADP. Catalyzes specifically the phosphorylation on 2'-hydroxyl of the adenosine moiety of NAD to yield NADP
CQJ30_06680	COG0564	pseudouridine synthase activity
CQJ30_06685	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
CQJ30_06695	COG3177	Filamentation induced by cAMP protein fic
CQJ30_06735	COG1086	Polysaccharide biosynthesis protein
CQJ30_06750	COG0463	Glycosyl transferase, family 2
CQJ30_06750	COG1216	Glycosyl transferase, family 2
CQJ30_06765	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CQJ30_06790	COG2153	protein acetylation
CQJ30_06800	COG2382	esterase
CQJ30_06805	COG2996	Protein conserved in bacteria
CQJ30_06810	COG1227	inorganic diphosphatase activity
CQJ30_06815	COG1114	Component of the transport system for branched-chain amino acids
CQJ30_06830	COG1247	-acetyltransferase
CQJ30_06840	COG2223	nitrite transmembrane transporter activity
CQJ30_06870	COG3328	transposase activity
CQJ30_06880	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
CQJ30_06900	COG1012	belongs to the aldehyde dehydrogenase family
CQJ30_06905	COG1605	Chorismate mutase
CQJ30_06905	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
CQJ30_06910	COG0287	Prephenate dehydrogenase
CQJ30_06915	COG2272	Belongs to the type-B carboxylesterase lipase family
CQJ30_06930	COG3546	catalase activity
CQJ30_06935	COG1349	DNA-binding transcription factor activity
CQJ30_06940	COG1105	Belongs to the carbohydrate kinase PfkB family
CQJ30_06945	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CQJ30_06945	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CQJ30_06945	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CQJ30_06960	COG2223	nitrite transmembrane transporter activity
CQJ30_06975	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
CQJ30_06980	COG0251	oxidation-reduction process
CQJ30_07000	COG0263	Catalyzes the transfer of a phosphate group to glutamate to form L-glutamate 5-phosphate
CQJ30_07005	COG0014	Catalyzes the NADPH-dependent reduction of L-glutamate 5-phosphate into L-glutamate 5-semialdehyde and phosphate. The product spontaneously undergoes cyclization to form 1-pyrroline-5- carboxylate
CQJ30_07010	COG1028	Short-chain dehydrogenase reductase Sdr
CQJ30_07025	COG1725	Transcriptional regulator
CQJ30_07030	COG1131	(ABC) transporter
CQJ30_07045	COG0318	PFAM AMP-dependent synthetase and ligase
CQJ30_07050	COG4841	protein insertion into membrane
CQJ30_07055	COG0516	GMP reductase activity
CQJ30_07060	COG0686	Belongs to the AlaDH PNT family
CQJ30_07065	COG0531	amino acid
CQJ30_07080	COG5504	Zn-dependent protease
CQJ30_07100	COG0366	Alpha amylase catalytic
CQJ30_07100	COG0366	Alpha amylase catalytic
CQJ30_07105	COG0561	phosphatase activity
CQJ30_07115	COG0210	DNA helicase
CQJ30_07120	COG3706	GGDEF domain
CQJ30_07125	COG1309	transcriptional regulator
CQJ30_07130	COG1511	domain protein
CQJ30_07135	COG1119	ATPase activity
CQJ30_07160	COG0702	epimerase
CQJ30_07205	COG4096	Type I site-specific restriction-modification system, R (Restriction) subunit and related
CQJ30_07210	COG1114	Component of the transport system for branched-chain amino acids
CQJ30_07225	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CQJ30_07245	COG0488	(ABC) transporter
CQJ30_07265	COG1012	belongs to the aldehyde dehydrogenase family
CQJ30_07270	COG2204	response regulator
CQJ30_07275	COG5002	protein histidine kinase activity
CQJ30_07285	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
CQJ30_07295	COG0791	NLP P60 protein
CQJ30_07295	COG1388	LysM domain
CQJ30_07305	COG4841	protein insertion into membrane
CQJ30_07310	COG0477	Major facilitator Superfamily
CQJ30_07340	COG0135	phosphoribosylanthranilate isomerase activity
CQJ30_07360	COG1457	Belongs to the purine-cytosine permease (2.A.39) family
CQJ30_07370	COG0697	spore germination
CQJ30_07385	COG4108	Increases the formation of ribosomal termination complexes and stimulates activities of RF-1 and RF-2. It binds guanine nucleotides and has strong preference for UGA stop codons. It may interact directly with the ribosome. The stimulation of RF- 1 and RF-2 is significantly reduced by GTP and GDP, but not by GMP
CQJ30_07390	COG0861	Integral membrane protein TerC family
CQJ30_07400	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
CQJ30_07405	COG4990	cell redox homeostasis
CQJ30_07410	COG0367	asparagine synthase
CQJ30_07415	COG3594	Acyltransferase
CQJ30_07425	COG0542	response to heat
CQJ30_07430	COG3949	Membrane
CQJ30_07440	COG4873	Protein conserved in bacteria
CQJ30_07450	COG3773	Cell wall hydrolase
CQJ30_07455	COG1028	Short-chain dehydrogenase reductase Sdr
CQJ30_07460	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CQJ30_07465	COG2084	Dehydrogenase
CQJ30_07470	COG0436	Aminotransferase
CQJ30_07475	COG0835	chemotaxis
CQJ30_07485	COG1408	metallophosphoesterase
CQJ30_07495	COG4703	Protein of unknown function (DUF1797)
CQJ30_07500	COG0517	IMP dehydrogenase activity
CQJ30_07505	COG0583	DNA-binding transcription factor activity
CQJ30_07515	COG1473	amidohydrolase
CQJ30_07520	COG0569	domain protein
CQJ30_07525	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
CQJ30_07580	COG4493	Belongs to the UPF0637 family
CQJ30_07585	COG0483	inositol monophosphate 1-phosphatase activity
CQJ30_07605	COG4896	Protein conserved in bacteria
CQJ30_07615	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
CQJ30_07620	COG4838	Belongs to the UPF0358 family
CQJ30_07625	COG0772	Belongs to the SEDS family
CQJ30_07630	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
CQJ30_07635	COG1612	heme a metabolic process
CQJ30_07640	COG0109	protoheme IX farnesyltransferase activity
CQJ30_07650	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
CQJ30_07660	COG3125	oxidoreductase activity, acting on diphenols and related substances as donors, oxygen as acceptor
CQJ30_07665	COG3336	cytochrome c oxidase
CQJ30_07680	COG2340	Cysteine-rich secretory protein family
CQJ30_07695	COG3679	Belongs to the UPF0342 family
CQJ30_07710	COG0742	ribosomal rna small subunit methyltransferase
CQJ30_07715	COG0669	Reversibly transfers an adenylyl group from ATP to 4'- phosphopantetheine, yielding dephospho-CoA (dPCoA) and pyrophosphate
CQJ30_07720	COG3314	Sporulation integral membrane protein YlbJ
CQJ30_07725	COG1752	Esterase of the alpha-beta hydrolase superfamily
CQJ30_07730	COG3480	Lon protease (S16) C-terminal proteolytic domain
CQJ30_07735	COG1323	Belongs to the UPF0348 family
CQJ30_07740	COG1399	metal-binding, possibly nucleic acid-binding protein
CQJ30_07745	COG0333	Belongs to the bacterial ribosomal protein bL32 family
CQJ30_07755	COG0454	-acetyltransferase
CQJ30_07760	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
CQJ30_07770	COG4365	Involved in bacillithiol (BSH) biosynthesis. May catalyze the last step of the pathway, the addition of cysteine to glucosamine malate (GlcN-Mal) to generate BSH
CQJ30_07775	COG2001	Belongs to the MraZ family
CQJ30_07780	COG0275	rRNA processing
CQJ30_07795	COG0768	penicillin binding
CQJ30_07805	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CQJ30_07810	COG0771	Cell wall formation. Catalyzes the addition of glutamate to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanine (UMA)
CQJ30_07815	COG0772	Belongs to the SEDS family
CQJ30_07820	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
CQJ30_07825	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
CQJ30_07830	COG3879	Bacterial protein of unknown function (DUF881)
CQJ30_07835	COG3879	Bacterial protein of unknown function (DUF881)
CQJ30_07840	COG3856	small basic protein
CQJ30_07845	COG0849	cell division
CQJ30_07850	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
CQJ30_07860	COG1191	sigma factor activity
CQJ30_07865	COG1191	sigma factor activity
CQJ30_07875	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
CQJ30_07880	COG1799	cell septum assembly
CQJ30_07885	COG0762	integral membrane protein
CQJ30_07890	COG2302	S4 RNA-binding domain
CQJ30_07895	COG3599	regulation of cell shape
CQJ30_07905	COG0060	amino acids such as valine, to avoid such errors it has two additional distinct tRNA(Ile)-dependent editing activities. One activity is designated as 'pretransfer' editing and involves the hydrolysis of activated Val-AMP. The other activity is designated 'posttransfer' editing and involves deacylation of mischarged Val-tRNA(Ile)
CQJ30_07915	COG0597	This protein specifically catalyzes the removal of signal peptides from prolipoproteins
CQJ30_07920	COG0564	pseudouridine synthase activity
CQJ30_07925	COG2065	Also displays a weak uracil phosphoribosyltransferase activity which is not physiologically significant
CQJ30_07930	COG0540	Belongs to the ATCase OTCase family
CQJ30_07935	COG0044	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amides
CQJ30_07940	COG0505	Belongs to the CarA family
CQJ30_07955	COG0167	dihydroorotate dehydrogenase activity
CQJ30_07965	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
CQJ30_07975	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
CQJ30_07980	COG1561	YicC-like family, N-terminal region
CQJ30_07985	COG0194	GDP metabolic process
CQJ30_07995	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CQJ30_08000	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CQJ30_08005	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
CQJ30_08010	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
CQJ30_08010	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
CQJ30_08015	COG0631	protein serine/threonine phosphatase activity
CQJ30_08020	COG0515	serine threonine protein kinase
CQJ30_08020	COG2815	serine threonine protein kinase
CQJ30_08025	COG1162	GTPase activity
CQJ30_08030	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
CQJ30_08035	COG1564	THIamine pyrophosphokinase
CQJ30_08045	COG0227	Belongs to the bacterial ribosomal protein bL28 family
CQJ30_08050	COG1302	Protein conserved in bacteria
CQJ30_08055	COG1461	Dihydroxyacetone kinase
CQJ30_08060	COG1760	l-serine dehydratase
CQJ30_08065	COG1760	l-serine dehydratase
CQJ30_08070	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
CQJ30_08075	COG1349	DNA-binding transcription factor activity
CQJ30_08080	COG0416	fatty acid biosynthetic process
CQJ30_08085	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
CQJ30_08090	COG1028	Short-chain dehydrogenase reductase Sdr
CQJ30_08095	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
CQJ30_08100	COG0571	ribonuclease III activity
CQJ30_08105	COG1196	nuclear chromosome segregation
CQJ30_08110	COG0552	protein localization to endoplasmic reticulum
CQJ30_08115	COG2739	Might take part in the signal recognition particle (SRP) pathway. This is inferred from the conservation of its genetic proximity to ftsY ffh. May be a regulatory protein
CQJ30_08120	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
CQJ30_08125	COG0228	four-way junction DNA binding
CQJ30_08130	COG1837	Belongs to the UPF0109 family
CQJ30_08140	COG0806	An accessory protein needed during the final step in the assembly of 30S ribosomal subunit, possibly for assembly of the head region. Probably interacts with S19. Essential for efficient processing of 16S rRNA. May be needed both before and after RbfA during the maturation of 16S rRNA. It has affinity for free ribosomal 30S subunits but not for 70S ribosomes
CQJ30_08145	COG0336	Belongs to the RNA methyltransferase TrmD family
CQJ30_08150	COG0335	large ribosomal subunit rRNA binding
CQJ30_08165	COG0164	Endonuclease that specifically degrades the RNA of RNA- DNA hybrids
CQJ30_08175	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CQJ30_08180	COG0045	succinate-CoA ligase (ADP-forming) activity
CQJ30_08185	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
CQJ30_08190	COG0758	DNA mediated transformation
CQJ30_08195	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
CQJ30_08200	COG4974	Belongs to the 'phage' integrase family
CQJ30_08205	COG5405	Protease subunit of a proteasome-like degradation complex believed to be a general protein degrading machinery
CQJ30_08210	COG1220	this subunit has chaperone activity. The binding of ATP and its subsequent hydrolysis by HslU are essential for unfolding of protein substrates subsequently hydrolyzed by HslV. HslU recognizes the N-terminal part of its protein substrates and unfolds these before they are guided to HslV for hydrolysis
CQJ30_08215	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
CQJ30_08220	COG1815	bacterial-type flagellum-dependent cell motility
CQJ30_08225	COG1558	bacterial-type flagellum-dependent cell motility
CQJ30_08230	COG1677	Flagellar hook-basal body complex protein FliE
CQJ30_08235	COG1766	The M ring may be actively involved in energy transduction
CQJ30_08240	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CQJ30_08245	COG1317	bacterial-type flagellum organization
CQJ30_08250	COG1157	protein secretion by the type III secretion system
CQJ30_08255	COG2882	bacterial-type flagellum organization
CQJ30_08270	COG1843	Required for flagellar hook formation. May act as a scaffolding protein
CQJ30_08280	COG4786	Flagellar basal body rod
CQJ30_08285	COG1582	Flagellar protein (FlbD)
CQJ30_08295	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CQJ30_08300	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
CQJ30_08300	COG1776	CheC inhibitor of MCP methylation
CQJ30_08305	COG2201	protein-glutamate methylesterase activity
CQJ30_08310	COG3190	flagellar
CQJ30_08315	COG1338	Plays a role in the flagellum-specific transport system
CQJ30_08320	COG1987	bacterial-type flagellum assembly
CQJ30_08325	COG1684	flagellar biosynthetic protein fliR
CQJ30_08330	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CQJ30_08335	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
CQJ30_08340	COG1419	protein localization to endoplasmic reticulum
CQJ30_08345	COG0455	bacterial-type flagellum organization
CQJ30_08350	COG2201	protein-glutamate methylesterase activity
CQJ30_08355	COG0643	Histidine kinase
CQJ30_08355	COG2198	Histidine kinase
CQJ30_08360	COG0835	chemotaxis
CQJ30_08365	COG1776	CheC inhibitor of MCP methylation
CQJ30_08370	COG1871	Probably deamidates glutamine residues to glutamate on methyl-accepting chemotaxis receptors (MCPs), playing an important role in chemotaxis
CQJ30_08375	COG1191	sigma factor activity
CQJ30_08390	COG0052	Belongs to the universal ribosomal protein uS2 family
CQJ30_08395	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
CQJ30_08400	COG0528	UMP kinase activity
CQJ30_08405	COG0233	cytoplasmic translational termination
CQJ30_08410	COG0020	Catalyzes the condensation of isopentenyl diphosphate (IPP) with allylic pyrophosphates generating different type of terpenoids
CQJ30_08415	COG4589	Belongs to the CDS family
CQJ30_08425	COG0750	zinc metalloprotease
CQJ30_08430	COG0442	prolyl-tRNA aminoacylation
CQJ30_08440	COG2176	DNA-directed DNA polymerase activity
CQJ30_08445	COG0779	Required for maturation of 30S ribosomal subunits
CQJ30_08450	COG0195	Participates in both transcription termination and antitermination
CQJ30_08455	COG2740	Nucleic-acid-binding protein implicated in transcription termination
CQJ30_08460	COG1358	cellular component organization or biogenesis
CQJ30_08465	COG0532	One of the essential components for the initiation of protein synthesis. Protects formylmethionyl-tRNA from spontaneous hydrolysis and promotes its binding to the 30S ribosomal subunits. Also involved in the hydrolysis of GTP during the formation of the 70S ribosomal complex
CQJ30_08470	COG1550	Protein conserved in bacteria
CQJ30_08475	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
CQJ30_08480	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
CQJ30_08485	COG0196	riboflavin kinase activity
CQJ30_08495	COG1185	polyribonucleotide nucleotidyltransferase activity
CQJ30_08500	COG0726	polysaccharide deacetylase
CQJ30_08505	COG0612	Peptidase, M16
CQJ30_08510	COG1873	PFAM PRC-barrel domain
CQJ30_08515	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CQJ30_08520	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
CQJ30_08525	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
CQJ30_08530	COG0527	aspartate kinase activity
CQJ30_08540	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
CQJ30_08545	COG0740	serine-type endopeptidase activity
CQJ30_08555	COG1674	ftsk spoiiie
CQJ30_08555	COG4980	gas vesicle protein
CQJ30_08580	COG0612	Peptidase, M16
CQJ30_08585	COG0612	Peptidase, M16
CQJ30_08590	COG0300	oxidoreductase activity
CQJ30_08605	COG1426	Protein conserved in bacteria
CQJ30_08610	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
CQJ30_08630	COG1671	Belongs to the UPF0178 family
CQJ30_08635	COG2340	Cysteine-rich secretory protein family
CQJ30_08645	COG1523	belongs to the glycosyl hydrolase 13 family
CQJ30_08650	COG0296	Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position
CQJ30_08655	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
CQJ30_08660	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
CQJ30_08665	COG0297	glycogen (starch) synthase activity
CQJ30_08670	COG0058	SHG alpha-glucan phosphorylase activity
CQJ30_08680	COG1533	DNA photolyase activity
CQJ30_08695	COG0640	Transcriptional regulator
CQJ30_08705	COG1182	Catalyzes the reductive cleavage of azo bond in aromatic azo compounds to the corresponding amines. Requires NADH, but not NADPH, as an electron donor for its activity
CQJ30_08710	COG0646	methionine synthase
CQJ30_08710	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
CQJ30_08715	COG0646	methionine synthase
CQJ30_08715	COG1410	methionine synthase
CQJ30_08720	COG4989	oxidoreductase activity
CQJ30_08725	COG0129	dihydroxy-acid dehydratase activity
CQJ30_08755	COG1122	ATPase activity
CQJ30_08770	COG4846	Membrane protein involved in cytochrome C biogenesis
CQJ30_08790	COG0471	metal ion transport
CQJ30_08795	COG1331	Highly conserved protein containing a thioredoxin domain
CQJ30_08800	COG0468	Can catalyze the hydrolysis of ATP in the presence of single-stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage
CQJ30_08810	COG1692	metallophosphoesterase
CQJ30_08815	COG2359	stage V sporulation protein S
CQJ30_08820	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CQJ30_08825	COG4550	Control of competence regulator ComK, YlbF/YmcA
CQJ30_08830	COG1408	metallophosphoesterase
CQJ30_08840	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CQJ30_08845	COG0249	that it carries out the mismatch recognition step. This protein has a weak ATPase activity
CQJ30_08850	COG0323	This protein is involved in the repair of mismatches in DNA. It is required for dam-dependent methyl-directed DNA mismatch repair. May act as a molecular matchmaker , a protein that promotes the formation of a stable complex between two or more DNA-binding proteins in an ATP-dependent manner without itself being part of a final effector complex
CQJ30_08855	COG0324	Catalyzes the transfer of a dimethylallyl group onto the adenine at position 37 in tRNAs that read codons beginning with uridine, leading to the formation of N6-(dimethylallyl)adenosine (i(6)A)
CQJ30_08865	COG0464	growth
CQJ30_08870	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
CQJ30_08875	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
CQJ30_08880	COG0789	Transcriptional regulator
CQJ30_08885	COG0174	glutamine synthetase
CQJ30_08890	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
CQJ30_08900	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
CQJ30_08905	COG4224	UPF0291 protein
CQJ30_08920	COG1132	(ABC) transporter
CQJ30_08925	COG1132	(ABC) transporter
CQJ30_08930	COG0785	Cytochrome C biogenesis protein
CQJ30_08935	COG2201	protein-glutamate methylesterase activity
CQJ30_08945	COG5146	pantothenate kinase activity
CQJ30_08960	COG0668	transmembrane transport
CQJ30_08970	COG1607	acyl-coa hydrolase
CQJ30_08975	COG0519	Catalyzes the synthesis of GMP from XMP
CQJ30_08990	COG1028	Short-chain dehydrogenase reductase Sdr
CQJ30_09010	COG0318	PFAM AMP-dependent synthetase and ligase
CQJ30_09015	COG0318	PFAM AMP-dependent synthetase and ligase
CQJ30_09020	COG0318	PFAM AMP-dependent synthetase and ligase
CQJ30_09030	COG1028	Short-chain dehydrogenase reductase Sdr
CQJ30_09040	COG2130	NADP-dependent
CQJ30_09070	COG1051	belongs to the nudix hydrolase family
CQJ30_09080	COG1733	regulation of RNA biosynthetic process
CQJ30_09085	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CQJ30_09110	COG0071	Belongs to the small heat shock protein (HSP20) family
CQJ30_09130	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
CQJ30_09150	COG0464	growth
CQJ30_09155	COG0824	Thioesterase
CQJ30_09170	COG0706	membrane insertase activity
CQJ30_09180	COG0860	N-Acetylmuramoyl-L-alanine amidase
CQJ30_09185	COG0344	acyl-phosphate glycerol-3-phosphate acyltransferase activity
CQJ30_09205	COG1832	CoA-binding protein
CQJ30_09210	COG0187	DNA topoisomerase II activity
CQJ30_09215	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
CQJ30_09220	COG1329	Transcriptional regulator
CQJ30_09275	COG0406	alpha-ribazole phosphatase activity
CQJ30_09280	COG3011	Protein conserved in bacteria
CQJ30_09285	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CQJ30_09295	COG0318	PFAM AMP-dependent synthetase and ligase
CQJ30_09300	COG0326	Molecular chaperone. Has ATPase activity
CQJ30_09310	COG0846	NAD-dependent lysine deacetylase and desuccinylase that specifically removes acetyl and succinyl groups on target proteins. Modulates the activities of several proteins which are inactive in their acylated form
CQJ30_09325	COG1022	Amp-dependent synthetase and ligase
CQJ30_09330	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CQJ30_09340	COG0183	Belongs to the thiolase family
CQJ30_09345	COG1028	Short-chain dehydrogenase reductase Sdr
CQJ30_09350	COG1024	Enoyl-CoA hydratase
CQJ30_09355	COG1960	acyl-CoA dehydrogenase activity
CQJ30_09360	COG1960	acyl-CoA dehydrogenase activity
CQJ30_09375	COG2197	response regulator
CQJ30_09385	COG2814	Major facilitator Superfamily
CQJ30_09390	COG1809	phosphosulfolactate synthase activity
CQJ30_09400	COG0175	sulfate reduction
CQJ30_09405	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CQJ30_09425	COG1368	sulfuric ester hydrolase activity
CQJ30_09435	COG0456	acetyltransferase
CQJ30_09440	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
CQJ30_09520	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CQJ30_09545	COG5577	PFAM Coat F domain
CQJ30_09570	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
CQJ30_09585	COG2323	membrane
CQJ30_09595	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CQJ30_09615	COG2323	membrane
CQJ30_09630	COG0860	N-Acetylmuramoyl-L-alanine amidase
CQJ30_09650	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CQJ30_09660	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
CQJ30_09665	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
CQJ30_09670	COG2814	Major facilitator Superfamily
CQJ30_09700	COG1028	Short-chain dehydrogenase reductase Sdr
CQJ30_09705	COG0385	Bile acid
CQJ30_09715	COG0697	spore germination
CQJ30_09740	COG0730	response to heat
CQJ30_09765	COG0438	transferase activity, transferring glycosyl groups
CQJ30_09770	COG0463	Glycosyl transferase, family 2
CQJ30_09770	COG1216	Glycosyl transferase, family 2
CQJ30_09790	COG1272	protein, Hemolysin III
CQJ30_09810	COG2211	Major facilitator Superfamily
CQJ30_09875	COG2205	protein histidine kinase activity
CQJ30_09880	COG0745	RESPONSE REGULATOR receiver
CQJ30_09905	COG0169	Involved in the biosynthesis of the chorismate, which leads to the biosynthesis of aromatic amino acids. Catalyzes the reversible NADPH linked reduction of 3-dehydroshikimate (DHSA) to yield shikimate (SA)
CQJ30_09910	COG1605	Chorismate mutase
CQJ30_09910	COG0077	Prephenate dehydratase
CQJ30_09915	COG0082	Catalyzes the anti-1,4-elimination of the C-3 phosphate and the C-6 proR hydrogen from 5-enolpyruvylshikimate-3-phosphate (EPSP) to yield chorismate, which is the branch point compound that serves as the starting substrate for the three terminal pathways of aromatic amino acid biosynthesis. This reaction introduces a second double bond into the aromatic ring system
CQJ30_09920	COG0128	3-phosphoshikimate 1-carboxyvinyltransferase activity
CQJ30_09925	COG0337	Catalyzes the conversion of 3-deoxy-D-arabino- heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ)
CQJ30_09935	COG0561	phosphatase activity
CQJ30_09940	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
CQJ30_09945	COG3883	PFAM NLP P60 protein
CQJ30_09945	COG0791	NLP P60 protein
CQJ30_09950	COG0527	aspartate kinase activity
CQJ30_09960	COG0768	penicillin binding
CQJ30_09980	COG4268	DNA restriction-modification system
CQJ30_09985	COG1401	restriction endodeoxyribonuclease activity
CQJ30_10005	COG0610	Subunit R is required for both nuclease and ATPase activities, but not for modification
CQJ30_10010	COG0732	type I restriction modification DNA specificity domain
CQJ30_10015	COG0286	site-specific DNA-methyltransferase (adenine-specific) activity
CQJ30_10030	COG1174	glycine betaine transport
CQJ30_10040	COG1174	glycine betaine transport
CQJ30_10045	COG0517	IMP dehydrogenase activity
CQJ30_10045	COG1125	glycine betaine transport
CQJ30_10055	COG2337	Toxic component of a toxin-antitoxin (TA) module
CQJ30_10060	COG2336	PFAM SpoVT AbrB
CQJ30_10065	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
CQJ30_10070	COG3588	fructose-bisphosphate aldolase
CQJ30_10075	COG2962	Rard protein
CQJ30_10080	COG1418	mRNA catabolic process
CQJ30_10105	COG4260	virion core protein, lumpy skin disease virus
CQJ30_10110	COG1512	COG1512 Beta-propeller domains of methanol dehydrogenase type
CQJ30_10115	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
CQJ30_10120	COG1842	Phage shock protein A
CQJ30_10140	COG0693	protein deglycase activity
CQJ30_10175	COG0010	Belongs to the arginase family
CQJ30_10185	COG1982	Orn Lys Arg decarboxylase major
CQJ30_10215	COG0603	Catalyzes the ATP-dependent conversion of 7-carboxy-7- deazaguanine (CDG) to 7-cyano-7-deazaguanine (preQ(0))
CQJ30_10225	COG0820	rRNA (adenine-C2-)-methyltransferase activity
CQJ30_10235	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CQJ30_10245	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CQJ30_10280	COG1307	EDD domain protein, DegV family
CQJ30_10285	COG0708	Exodeoxyribonuclease III
CQJ30_10290	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
CQJ30_10295	COG1360	Flagellar Motor Protein
CQJ30_10300	COG0328	RNA-DNA hybrid ribonuclease activity
CQJ30_10300	COG3341	Caulimovirus viroplasmin
CQJ30_10315	COG0671	phosphoesterase, PA-phosphatase related
CQJ30_10320	COG1132	(ABC) transporter
CQJ30_10325	COG1132	(ABC) transporter
CQJ30_10330	COG0604	alcohol dehydrogenase
CQJ30_10335	COG0204	Acyl-transferase
CQJ30_10355	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
CQJ30_10360	COG1408	metallophosphoesterase
CQJ30_10375	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CQJ30_10390	COG0626	cystathionine gamma-synthase activity
CQJ30_10395	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CQJ30_10405	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
CQJ30_10410	COG1854	S-ribosylhomocysteine lyase activity
CQJ30_10425	COG1970	mechanosensitive ion channel activity
CQJ30_10435	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
CQJ30_10455	COG1268	BioY protein
CQJ30_10470	COG0063	ADP-dependent NAD(P)H-hydrate dehydratase activity
CQJ30_10480	COG2151	metal-sulfur cluster biosynthetic enzyme
CQJ30_10485	COG2814	Major facilitator Superfamily
CQJ30_10500	COG1280	lysine exporter protein (LysE YggA)
CQJ30_10505	COG1113	amino acid transport
CQJ30_10515	COG1278	Cold shock
CQJ30_10520	COG1278	Cold shock
CQJ30_10525	COG2032	superoxide dismutase activity
CQJ30_10530	COG1273	With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD
CQJ30_10535	COG1793	dna ligase
CQJ30_10535	COG3285	dna ligase
CQJ30_10545	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CQJ30_10570	COG0793	Belongs to the peptidase S41A family
CQJ30_10570	COG3409	Peptidoglycan-binding domain 1 protein
CQJ30_10575	COG1876	peptidase activity
CQJ30_10590	COG4326	sporulation control protein
CQJ30_10600	COG4479	Belongs to the UPF0346 family
CQJ30_10605	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
CQJ30_10615	COG3270	Specifically methylates the cytosine at position 1407 (m5C1407) of 16S rRNA
CQJ30_10615	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
CQJ30_10625	COG2755	lipolytic protein G-D-S-L family
CQJ30_10630	COG1999	signal sequence binding
CQJ30_10635	COG1307	EDD domain protein, DegV family
CQJ30_10640	COG2135	peptidase activity
CQJ30_10645	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
CQJ30_10665	COG1413	lyase activity
CQJ30_10670	COG0488	(ABC) transporter
CQJ30_10690	COG1321	iron dependent repressor
CQJ30_10695	COG1278	Cold shock
CQJ30_10705	COG0328	RNA-DNA hybrid ribonuclease activity
CQJ30_10735	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CQJ30_10740	COG5002	protein histidine kinase activity
CQJ30_10745	COG0745	RESPONSE REGULATOR receiver
CQJ30_10750	COG1388	LysM domain
CQJ30_10760	COG2217	Heavy metal translocating P-type atpase
CQJ30_10775	COG2217	Heavy metal translocating P-type atpase
CQJ30_10780	COG2608	mercury ion transmembrane transporter activity
CQJ30_10790	COG1937	Protein conserved in bacteria
CQJ30_10815	COG2226	methyltransferase
CQJ30_10820	COG2132	Multicopper oxidase
CQJ30_10860	COG0739	heme binding
CQJ30_10900	COG0446	pyridine nucleotide-disulphide oxidoreductase
CQJ30_10910	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
CQJ30_10915	COG0346	lactoylglutathione lyase activity
CQJ30_10920	COG0640	Transcriptional regulator
CQJ30_10955	COG2132	Multicopper oxidase
CQJ30_10960	COG0682	Transfers the N-acyl diglyceride group on what will become the N-terminal cysteine of membrane lipoproteins
CQJ30_10990	COG4372	Transposase
CQJ30_11030	COG4974	Belongs to the 'phage' integrase family
CQJ30_11075	COG1192	Involved in chromosome partitioning
CQJ30_11095	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CQJ30_11100	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
CQJ30_11105	COG2233	PERMEase
CQJ30_11115	COG3434	signal transduction protein containing EAL and modified HD-GYP domains
CQJ30_11120	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
CQJ30_11130	COG0116	Belongs to the methyltransferase superfamily
CQJ30_11140	COG3599	regulation of cell shape
CQJ30_11155	COG3359	exonuclease
CQJ30_11160	COG1205	dead DEAH box helicase
CQJ30_11160	COG1111	helicase
CQJ30_11165	COG0071	Belongs to the small heat shock protein (HSP20) family
CQJ30_11190	COG3331	DNA recombination
CQJ30_11195	COG4499	WXG100 protein secretion system (Wss), protein YukC
CQJ30_11195	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CQJ30_11205	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
CQJ30_11210	COG3935	DnaD domain protein
CQJ30_11215	COG0017	Asparaginyl-tRNA synthetase
CQJ30_11235	COG1199	ATP-dependent helicase activity
CQJ30_11235	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
CQJ30_11240	COG0853	Catalyzes the pyruvoyl-dependent decarboxylation of aspartate to produce beta-alanine
CQJ30_11245	COG0414	Catalyzes the condensation of pantoate with beta-alanine in an ATP-dependent reaction via a pantoyl-adenylate intermediate
CQJ30_11250	COG0413	3-methyl-2-oxobutanoate hydroxymethyltransferase activity
CQJ30_11260	COG0617	tRNA 3'-terminal CCA addition
CQJ30_11265	COG0438	transferase activity, transferring glycosyl groups
CQJ30_11270	COG1803	Methylglyoxal synthase
CQJ30_11280	COG1694	Mazg nucleotide pyrophosphohydrolase
CQJ30_11285	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CQJ30_11290	COG2738	Putative neutral zinc metallopeptidase
CQJ30_11300	COG4347	Protein of unknown function (DUF1405)
CQJ30_11310	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
CQJ30_11325	COG5582	Belongs to the UPF0302 family
CQJ30_11330	COG0457	Tetratricopeptide repeat
CQJ30_11340	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
CQJ30_11345	COG0105	UTP biosynthetic process
CQJ30_11350	COG0142	geranyltranstransferase activity
CQJ30_11360	COG0142	geranyltranstransferase activity
CQJ30_11370	COG0302	gtp cyclohydrolase
CQJ30_11375	COG0776	regulation of translation
CQJ30_11380	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
CQJ30_11400	COG1160	GTP binding
CQJ30_11420	COG0539	negative regulation of cytoplasmic translation
CQJ30_11430	COG0283	belongs to the cytidylate kinase family. Type 1 subfamily
CQJ30_11445	COG2959	enzyme of heme biosynthesis
CQJ30_11450	COG3773	Cell wall hydrolase
CQJ30_11450	COG3409	Peptidoglycan-binding domain 1 protein
CQJ30_11460	COG2339	peptidase activity
CQJ30_11470	COG0492	ferredoxin-NADP+ reductase activity
CQJ30_11525	COG2205	protein histidine kinase activity
CQJ30_11530	COG0745	RESPONSE REGULATOR receiver
CQJ30_11545	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CQJ30_11550	COG4862	establishment of competence for transformation
CQJ30_11565	COG1266	CAAX protease self-immunity
CQJ30_11570	COG0514	ATP-dependent DNA helicase (RecQ)
CQJ30_11585	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
CQJ30_11590	COG0739	heme binding
CQJ30_11590	COG0741	lytic transglycosylase activity
CQJ30_11590	COG1196	nuclear chromosome segregation
CQJ30_11595	COG5002	protein histidine kinase activity
CQJ30_11600	COG0745	RESPONSE REGULATOR receiver
CQJ30_11605	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CQJ30_11610	COG1333	cytochrome c biogenesis protein
CQJ30_11615	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CQJ30_11620	COG1187	pseudouridine synthase activity
CQJ30_11625	COG0700	Nucleoside recognition
CQJ30_11630	COG2715	membrane protein required for spore maturation
CQJ30_11635	COG1686	Belongs to the peptidase S11 family
CQJ30_11640	COG1386	Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpA that pull DNA away from mid-cell into both cell halves
CQJ30_11660	COG0697	spore germination
CQJ30_11680	COG2172	sigma factor antagonist activity
CQJ30_11690	COG1686	Belongs to the peptidase S11 family
CQJ30_11705	COG4974	Belongs to the 'phage' integrase family
CQJ30_11715	COG0735	belongs to the Fur family
CQJ30_11720	COG1300	Membrane
CQJ30_11725	COG1379	DNA repair
CQJ30_11740	COG0667	Aldo Keto reductase
CQJ30_11750	COG1073	alpha beta
CQJ30_11770	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CQJ30_11775	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
CQJ30_11780	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CQJ30_11785	COG0139	Catalyzes the hydrolysis of the adenine ring of phosphoribosyl-AMP
CQJ30_11785	COG0140	phosphoribosyl-ATP diphosphatase activity
CQJ30_11795	COG0106	1-(5-phosphoribosyl)-5- 5-phosphoribosylamino)methylideneamino imidazole-4-carboxamide isomerase
CQJ30_11800	COG0118	IGPS catalyzes the conversion of PRFAR and glutamine to IGP, AICAR and glutamate. The HisH subunit provides the glutamine amidotransferase activity that produces the ammonia necessary to HisF for the synthesis of IGP and AICAR
CQJ30_11810	COG0141	Catalyzes the sequential NAD-dependent oxidations of L- histidinol to L-histidinaldehyde and then to L-histidine
CQJ30_11815	COG0040	Catalyzes the condensation of ATP and 5-phosphoribose 1- diphosphate to form N'-(5'-phosphoribosyl)-ATP (PR-ATP). Has a crucial role in the pathway because the rate of histidine biosynthesis seems to be controlled primarily by regulation of hisG enzymatic activity
CQJ30_11820	COG3705	Required for the first step of histidine biosynthesis. May allow the feedback regulation of ATP phosphoribosyltransferase activity by histidine
CQJ30_11825	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
CQJ30_11830	COG0300	oxidoreductase activity
CQJ30_11835	COG1234	tRNA 3'-trailer cleavage
CQJ30_11840	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
CQJ30_11845	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
CQJ30_11850	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
CQJ30_11855	COG0835	chemotaxis
CQJ30_11860	COG2195	Cleaves the N-terminal amino acid of tripeptides
CQJ30_11865	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
CQJ30_11870	COG0346	lactoylglutathione lyase activity
CQJ30_11875	COG1376	ErfK ybiS ycfS ynhG family protein
CQJ30_11885	COG1703	isobutyryl-CoA mutase activity
CQJ30_11895	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
CQJ30_11895	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
CQJ30_11900	COG0508	dehydrogenase complex catalyzes the overall conversion of
CQJ30_11905	COG0022	dehydrogenase e1 component
CQJ30_11910	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
CQJ30_11915	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CQJ30_11930	COG3829	transcription factor binding
CQJ30_11930	COG3290	protein histidine kinase activity
CQJ30_11940	COG0584	glycerophosphoryl diester phosphodiesterase
CQJ30_11950	COG0750	zinc metalloprotease
CQJ30_11955	COG0497	DNA recombination
CQJ30_11960	COG1438	arginine binding
CQJ30_11965	COG0840	transmembrane signaling receptor activity
CQJ30_11970	COG0549	Belongs to the carbamate kinase family
CQJ30_11980	COG0078	Reversibly catalyzes the transfer of the carbamoyl group from carbamoyl phosphate (CP) to the N(epsilon) atom of ornithine (ORN) to produce L-citrulline
CQJ30_11990	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
CQJ30_11995	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
CQJ30_12000	COG1154	Catalyzes the acyloin condensation reaction between C atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D-xylulose-5-phosphate (DXP)
CQJ30_12010	COG1722	exodeoxyribonuclease VII activity
CQJ30_12030	COG1302	Protein conserved in bacteria
CQJ30_12035	COG0439	Biotin carboxylase
CQJ30_12040	COG0511	ligase activity, forming carbon-carbon bonds
CQJ30_12080	COG3854	ATPases associated with a variety of cellular activities
CQJ30_12085	COG0231	Involved in peptide bond synthesis. Stimulates efficient translation and peptide-bond synthesis on native or reconstituted 70S ribosomes in vitro. Probably functions indirectly by altering the affinity of the ribosome for aminoacyl-tRNA, thus increasing their reactivity as acceptors for peptidyl transferase
CQJ30_12090	COG0006	proline dipeptidase activity
CQJ30_12105	COG1752	Esterase of the alpha-beta hydrolase superfamily
CQJ30_12110	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
CQJ30_12115	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CQJ30_12125	COG0403	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
CQJ30_12130	COG0404	The glycine cleavage system catalyzes the degradation of glycine
CQJ30_12135	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CQJ30_12160	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CQJ30_12165	COG1459	type II secretion system
CQJ30_12170	COG4537	Required for transformation and DNA binding
CQJ30_12210	COG1940	carbohydrate kinase activity
CQJ30_12215	COG4483	Protein conserved in bacteria
CQJ30_12220	COG0697	spore germination
CQJ30_12230	COG0457	Tetratricopeptide repeat
CQJ30_12230	COG0705	Rhomboid family
CQJ30_12240	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
CQJ30_12245	COG0267	Belongs to the bacterial ribosomal protein bL33 family
CQJ30_12270	COG0477	Major facilitator Superfamily
CQJ30_12280	COG2839	Protein conserved in bacteria
CQJ30_12305	COG4709	membrane
CQJ30_12315	COG0735	belongs to the Fur family
CQJ30_12320	COG1108	ABC-type Mn2 Zn2 transport systems permease components
CQJ30_12325	COG1121	(ABC) transporter
CQJ30_12335	COG0648	Endonuclease IV plays a role in DNA repair. It cleaves phosphodiester bonds at apurinic or apyrimidinic sites (AP sites) to produce new 5'-ends that are base-free deoxyribose 5-phosphate residues. It preferentially attacks modified AP sites created by bleomycin and neocarzinostatin
CQJ30_12340	COG0513	Belongs to the DEAD box helicase family
CQJ30_12350	COG0761	Catalyzes the conversion of 1-hydroxy-2-methyl-2-(E)- butenyl 4-diphosphate (HMBPP) into a mixture of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). Acts in the terminal step of the DOXP MEP pathway for isoprenoid precursor biosynthesis
CQJ30_12355	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
CQJ30_12360	COG2384	SAM-dependent methyltransferase
CQJ30_12365	COG2010	Cytochrome c
CQJ30_12370	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
CQJ30_12375	COG0358	DNA primase activity
CQJ30_12380	COG1806	Bifunctional serine threonine kinase and phosphorylase involved in the regulation of the
CQJ30_12385	COG0517	IMP dehydrogenase activity
CQJ30_12390	COG0751	glycine-tRNA ligase activity
CQJ30_12395	COG0752	glycyl-tRNA synthetase alpha subunit
CQJ30_12410	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
CQJ30_12420	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
CQJ30_12425	COG0319	Single strand-specific metallo-endoribonuclease involved in late-stage 70S ribosome quality control and in maturation of the 3' terminus of the 16S rRNA
CQJ30_12430	COG1480	7TM receptor with intracellular HD hydrolase
CQJ30_12435	COG1702	phosphate starvation-inducible protein PhoH
CQJ30_12455	COG4864	UPF0365 protein
CQJ30_12460	COG1030	water channel activity
CQJ30_12465	COG1610	YqeY-like protein
CQJ30_12470	COG0828	Belongs to the bacterial ribosomal protein bS21 family
CQJ30_12475	COG1283	sodium-dependent phosphate transmembrane transporter activity
CQJ30_12480	COG0274	Catalyzes a reversible aldol reaction between acetaldehyde and D-glyceraldehyde 3-phosphate to generate 2-deoxy- D-ribose 5-phosphate
CQJ30_12485	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
CQJ30_12490	COG1385	rRNA (uridine-N3-)-methyltransferase activity
CQJ30_12495	COG2264	protein methyltransferase activity
CQJ30_12500	COG0484	heat shock protein binding
CQJ30_12505	COG0443	Heat shock 70 kDa protein
CQJ30_12510	COG0576	Participates actively in the response to hyperosmotic and heat shock by preventing the aggregation of stress-denatured proteins, in association with DnaK and GrpE. It is the nucleotide exchange factor for DnaK and may function as a thermosensor. Unfolded proteins bind initially to DnaJ
CQJ30_12515	COG1420	regulation of RNA biosynthetic process
CQJ30_12520	COG0635	Involved in the biosynthesis of porphyrin-containing compound
CQJ30_12525	COG0481	GTPase activity
CQJ30_12540	COG0268	Binds directly to 16S ribosomal RNA
CQJ30_12545	COG1466	dna polymerase III delta subunit
CQJ30_12555	COG2333	competence protein COMEC
CQJ30_12555	COG0658	competence protein
CQJ30_12560	COG2131	deaminase
CQJ30_12570	COG1596	polysaccharide export
CQJ30_12570	COG1555	photosystem II stabilization
CQJ30_12575	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
CQJ30_12580	COG2226	methyltransferase
CQJ30_12585	COG0799	negative regulation of ribosome biogenesis
CQJ30_12590	COG1713	HD superfamily hydrolase involved in NAD metabolism
CQJ30_12595	COG1057	Catalyzes the reversible adenylation of nicotinate mononucleotide (NaMN) to nicotinic acid adenine dinucleotide (NaAD)
CQJ30_12600	COG1534	Rna-binding protein
CQJ30_12605	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
CQJ30_12610	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
CQJ30_12625	COG0688	phosphatidylethanolamine metabolic process
CQJ30_12630	COG1183	phosphatidylcholine synthase activity
CQJ30_12635	COG1191	sigma factor activity
CQJ30_12645	COG0577	efflux transmembrane transporter activity
CQJ30_12650	COG0745	RESPONSE REGULATOR receiver
CQJ30_12655	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
CQJ30_12665	COG0768	penicillin binding
CQJ30_12670	COG0782	Necessary for efficient RNA polymerase transcription elongation past template-encoded arresting sites. The arresting sites in DNA have the property of trapping a certain fraction of elongating RNA polymerases that pass through, resulting in locked ternary complexes. Cleavage of the nascent transcript by cleavage factors such as GreA or GreB allows the resumption of elongation from the new 3'terminus
CQJ30_12675	COG0572	uridine kinase
CQJ30_12695	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
CQJ30_12705	COG3906	Belongs to the UPF0473 family
CQJ30_12710	COG0816	Could be a nuclease involved in processing of the 5'-end of pre-16S rRNA
CQJ30_12715	COG4472	Bacterial protein of unknown function (DUF965)
CQJ30_12720	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
CQJ30_12725	COG0628	permease
CQJ30_12735	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
CQJ30_12740	COG0482	sulfurtransferase activity
CQJ30_12745	COG1104	cysteine desulfurase activity
CQJ30_12750	COG1959	2 iron, 2 sulfur cluster binding
CQJ30_12755	COG2364	Membrane
CQJ30_12760	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
CQJ30_12770	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
CQJ30_12780	COG0173	Aspartyl-tRNA synthetase with relaxed tRNA specificity since it is able to aspartylate not only its cognate tRNA(Asp) but also tRNA(Asn). Reaction proceeds in two steps L-aspartate is first activated by ATP to form Asp-AMP and then transferred to the acceptor end of tRNA(Asp Asn)
CQJ30_12785	COG0124	histidyl-tRNA synthetase
CQJ30_12795	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
CQJ30_12800	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
CQJ30_12805	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
CQJ30_12805	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
CQJ30_12810	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CQJ30_12810	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
CQJ30_12820	COG2244	polysaccharide biosynthetic process
CQJ30_12825	COG2323	membrane
CQJ30_12835	COG1862	Preprotein translocase
CQJ30_12840	COG0343	queuine tRNA-ribosyltransferase activity
CQJ30_12845	COG0809	Transfers and isomerizes the ribose moiety from AdoMet to the 7-aminomethyl group of 7-deazaguanine (preQ1-tRNA) to give epoxyqueuosine (oQ-tRNA)
CQJ30_12855	COG2255	four-way junction helicase activity
CQJ30_12860	COG0632	four-way junction helicase activity
CQJ30_12865	COG1454	alcohol dehydrogenase
CQJ30_12865	COG1012	belongs to the aldehyde dehydrogenase family
CQJ30_12875	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
CQJ30_12885	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
CQJ30_12890	COG1063	alcohol dehydrogenase
CQJ30_12900	COG1454	alcohol dehydrogenase
CQJ30_12910	COG0171	NAD+ synthase (glutamine-hydrolyzing) activity
CQJ30_12925	COG3328	transposase activity
CQJ30_12940	COG0536	An essential GTPase which binds GTP, GDP and possibly (p)ppGpp with moderate affinity, with high nucleotide exchange rates and a fairly low GTP hydrolysis rate. Plays a role in control of the cell cycle, stress response, ribosome biogenesis and in those bacteria that undergo differentiation, in morphogenesis control
CQJ30_12945	COG3290	protein histidine kinase activity
CQJ30_12950	COG0211	Belongs to the bacterial ribosomal protein bL27 family
CQJ30_12955	COG2868	ribosomal protein
CQJ30_12960	COG0261	This protein binds to 23S rRNA in the presence of protein L20
CQJ30_12965	COG1530	ribonuclease E activity
CQJ30_12970	COG1994	Peptidase M50
CQJ30_12975	COG0739	heme binding
CQJ30_12985	COG2894	cell division
CQJ30_12990	COG0850	regulation of cytokinetic process
CQJ30_12995	COG2891	Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins
CQJ30_13000	COG1792	Involved in formation and maintenance of cell shape
CQJ30_13005	COG1077	Cell shape determining protein MreB Mrl
CQJ30_13010	COG2003	Belongs to the UPF0758 family
CQJ30_13030	COG0765	amino acid transport
CQJ30_13035	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
CQJ30_13070	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
CQJ30_13120	COG2199	diguanylate cyclase activity
CQJ30_13125	COG0285	dihydrofolate synthase activity
CQJ30_13140	COG0525	valine-tRNA ligase activity
CQJ30_13165	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
CQJ30_13170	COG1388	LysM domain
CQJ30_13175	COG0001	glutamate-1-semialdehyde 2,1-aminomutase activity
CQJ30_13180	COG0113	porphobilinogen synthase activity
CQJ30_13190	COG0181	hydroxymethylbilane synthase activity
CQJ30_13195	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
CQJ30_13210	COG0218	Necessary for normal cell division and for the maintenance of normal septation
CQJ30_13215	COG0466	ATP-dependent serine protease that mediates the selective degradation of mutant and abnormal proteins as well as certain short-lived regulatory proteins. Required for cellular homeostasis and for survival from DNA damage and developmental changes induced by stress. Degrades polypeptides processively to yield small peptide fragments that are 5 to 10 amino acids long. Binds to DNA in a double-stranded, site-specific manner
CQJ30_13220	COG1067	ATP-dependent peptidase activity
CQJ30_13220	COG0470	DNA polymerase III
CQJ30_13225	COG1219	ATP-dependent specificity component of the Clp protease. It directs the protease to specific substrates. Can perform chaperone functions in the absence of ClpP
CQJ30_13230	COG0544	peptidyl-prolyl cis-trans isomerase activity
CQJ30_13235	COG1477	protein flavinylation
CQJ30_13235	COG0457	Tetratricopeptide repeat
CQJ30_13260	COG5401	PFAM Sporulation and spore germination
CQJ30_13265	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
CQJ30_13270	COG1846	Transcriptional regulator
CQJ30_13280	COG2197	response regulator
CQJ30_13285	COG0824	Thioesterase
CQJ30_13290	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
CQJ30_13295	COG1053	succinate dehydrogenase
CQJ30_13300	COG2009	succinate dehydrogenase
CQJ30_13305	COG1719	4-vinyl reductase, 4VR
CQJ30_13310	COG0322	excinuclease ABC activity
CQJ30_13315	COG3118	belongs to the thioredoxin family
CQJ30_13320	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
CQJ30_13325	COG2086	electron transfer activity
CQJ30_13330	COG1024	Enoyl-CoA hydratase
CQJ30_13335	COG1309	transcriptional regulator
CQJ30_13340	COG0318	PFAM AMP-dependent synthetase and ligase
CQJ30_13345	COG3766	membrane
CQJ30_13350	COG1193	negative regulation of DNA recombination
CQJ30_13355	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
CQJ30_13355	COG1796	DNA polymerase
CQJ30_13360	COG1286	toxin biosynthetic process
CQJ30_13365	COG3027	Activator of cell division through the inhibition of FtsZ GTPase activity, therefore promoting FtsZ assembly into bundles of protofilaments necessary for the formation of the division Z ring. It is recruited early at mid-cell but it is not essential for cell division
CQJ30_13370	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CQJ30_13370	COG0072	phenylalanine-tRNA ligase activity
CQJ30_13375	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
CQJ30_13380	COG0840	transmembrane signaling receptor activity
CQJ30_13385	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
CQJ30_13395	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CQJ30_13400	COG1363	Peptidase, m42
CQJ30_13405	COG0756	dUTP diphosphatase activity
CQJ30_13415	COG0398	Pfam SNARE associated Golgi protein
CQJ30_13420	COG0292	Binds directly to 23S ribosomal RNA and is necessary for the in vitro assembly process of the 50S ribosomal subunit. It is not involved in the protein synthesizing functions of that subunit
CQJ30_13425	COG0291	Belongs to the bacterial ribosomal protein bL35 family
CQJ30_13440	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
CQJ30_13450	COG1484	DNA-dependent DNA replication
CQJ30_13455	COG3611	Membrane attachment protein
CQJ30_13460	COG1327	Negatively regulates transcription of bacterial ribonucleotide reductase nrd genes and operons by binding to NrdR- boxes
CQJ30_13470	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
CQJ30_13475	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CQJ30_13480	COG0237	dephospho-CoA kinase activity
CQJ30_13485	COG1971	Probably functions as a manganese efflux pump
CQJ30_13490	COG0266	class I DNA-(apurinic or apyrimidinic site) endonuclease activity
CQJ30_13495	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CQJ30_13495	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
CQJ30_13500	COG0330	HflC and HflK could
CQJ30_13505	COG0330	HflC and HflK could
CQJ30_13510	COG5002	protein histidine kinase activity
CQJ30_13515	COG0745	RESPONSE REGULATOR receiver
CQJ30_13520	COG0039	L-malate dehydrogenase activity
CQJ30_13525	COG0538	isocitrate dehydrogenase activity
CQJ30_13530	COG0372	Belongs to the citrate synthase family
CQJ30_13535	COG0628	permease
CQJ30_13540	COG3030	protein affecting phage T7 exclusion by the F plasmid
CQJ30_13555	COG0825	malonyl-CoA metabolic process
CQJ30_13570	COG0281	malic enzyme
CQJ30_13575	COG0587	DNA-directed DNA polymerase activity
CQJ30_13590	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
CQJ30_13600	COG4109	DRTGG domain
CQJ30_13615	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
CQJ30_13620	COG0006	proline dipeptidase activity
CQJ30_13625	COG0589	response to stress
CQJ30_13640	COG1486	melibiose metabolic process
CQJ30_13650	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CQJ30_13675	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CQJ30_13680	COG1940	carbohydrate kinase activity
CQJ30_13685	COG0282	Catalyzes the formation of acetyl phosphate from acetate and ATP. Can also catalyze the reverse reaction
CQJ30_13690	COG0827	DNA restriction-modification system
CQJ30_13695	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
CQJ30_13700	COG3874	Sporulation protein YtfJ
CQJ30_13710	COG1714	RDD family
CQJ30_13715	COG0616	signal peptide processing
CQJ30_13725	COG0301	tRNA thio-modification
CQJ30_13730	COG1104	cysteine desulfurase activity
CQJ30_13735	COG4477	modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
CQJ30_13740	COG1309	transcriptional regulator
CQJ30_13745	COG1956	GAF domain-containing protein
CQJ30_13750	COG2199	diguanylate cyclase activity
CQJ30_13750	COG2203	Gaf domain
CQJ30_13760	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
CQJ30_13770	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CQJ30_13770	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
CQJ30_13775	COG0307	riboflavin synthase, alpha
CQJ30_13780	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CQJ30_13780	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
CQJ30_13785	COG1476	TRANSCRIPTIONal
CQJ30_13805	COG3716	PTS system mannose fructose sorbose family IID component
CQJ30_13810	COG3715	PTS system
CQJ30_13830	COG3858	chitin binding
CQJ30_13830	COG1388	LysM domain
CQJ30_13845	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
CQJ30_13870	COG0235	Class ii aldolase
CQJ30_13875	COG4806	L-rhamnose isomerase
CQJ30_13885	COG1917	Cupin 2, conserved barrel domain protein
CQJ30_13885	COG2207	Transcriptional regulator
CQJ30_13890	COG1122	ATPase activity
CQJ30_13900	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
CQJ30_13915	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
CQJ30_13935	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
CQJ30_13940	COG0454	-acetyltransferase
CQJ30_13945	COG0517	IMP dehydrogenase activity
CQJ30_13950	COG0123	including yeast histone deacetylase and acetoin utilization protein
CQJ30_13975	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CQJ30_13975	COG0723	plastoquinol--plastocyanin reductase activity
CQJ30_13985	COG1960	acyl-CoA dehydrogenase activity
CQJ30_14005	COG1960	acyl-CoA dehydrogenase activity
CQJ30_14010	COG0183	Belongs to the thiolase family
CQJ30_14025	COG3118	belongs to the thioredoxin family
CQJ30_14040	COG0773	UDP-N-acetylmuramate-L-alanine ligase activity
CQJ30_14045	COG1674	ftsk spoiiie
CQJ30_14055	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
CQJ30_14060	COG4848	Belongs to the UPF0354 family
CQJ30_14065	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CQJ30_14075	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
CQJ30_14080	COG1363	Peptidase, m42
CQJ30_14090	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
CQJ30_14095	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CQJ30_14100	COG0220	tRNA (guanine-N7-)-methyltransferase activity
CQJ30_14110	COG0510	thiamine kinase activity
CQJ30_14130	COG1349	DNA-binding transcription factor activity
CQJ30_14135	COG1187	pseudouridine synthase activity
CQJ30_14145	COG2244	polysaccharide biosynthetic process
CQJ30_14150	COG2081	HI0933 family
CQJ30_14160	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
CQJ30_14165	COG0495	leucyl-tRNA aminoacylation
CQJ30_14175	COG0502	Catalyzes the conversion of dethiobiotin (DTB) to biotin by the insertion of a sulfur atom into dethiobiotin via a radical- based mechanism
CQJ30_14180	COG1268	BioY protein
CQJ30_14190	COG2814	Major facilitator Superfamily
CQJ30_14200	COG1242	4 iron, 4 sulfur cluster binding
CQJ30_14205	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
CQJ30_14210	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
CQJ30_14220	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
CQJ30_14230	COG1959	2 iron, 2 sulfur cluster binding
CQJ30_14235	COG0192	Catalyzes the formation of S-adenosylmethionine (AdoMet) from methionine and ATP. The overall synthetic reaction is composed of two sequential steps, AdoMet formation and the subsequent tripolyphosphate hydrolysis which occurs prior to release of AdoMet from the enzyme
CQJ30_14240	COG1866	Involved in the gluconeogenesis. Catalyzes the conversion of oxaloacetate (OAA) to phosphoenolpyruvate (PEP) through direct phosphoryl transfer between the nucleoside triphosphate and OAA
CQJ30_14255	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
CQJ30_14260	COG1116	anion transmembrane transporter activity
CQJ30_14265	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
CQJ30_14270	COG0494	nUDIX hydrolase
CQJ30_14280	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
CQJ30_14290	COG0783	Belongs to the Dps family
CQJ30_14295	COG0759	Could be involved in insertion of integral membrane proteins into the membrane
CQJ30_14300	COG0803	Belongs to the bacterial solute-binding protein 9 family
CQJ30_14300	COG3443	Belongs to the bacterial solute-binding protein 9 family
CQJ30_14305	COG0318	PFAM AMP-dependent synthetase and ligase
CQJ30_14310	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
CQJ30_14315	COG1575	Belongs to the MenA family. Type 1 subfamily
CQJ30_14320	COG0473	3-isopropylmalate dehydrogenase activity
CQJ30_14325	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CQJ30_14330	COG0183	Belongs to the thiolase family
CQJ30_14335	COG1960	acyl-CoA dehydrogenase activity
CQJ30_14340	COG1024	Enoyl-CoA hydratase
CQJ30_14345	COG1250	3-hydroxyacyl-CoA dehydrogenase
CQJ30_14355	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
CQJ30_14360	COG1012	belongs to the aldehyde dehydrogenase family
CQJ30_14365	COG0436	Aminotransferase
CQJ30_14375	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
CQJ30_14380	COG3835	regulator
CQJ30_14385	COG0655	NAD(P)H dehydrogenase (quinone) activity
CQJ30_14390	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CQJ30_14520	COG1285	pathogenesis
CQJ30_14535	COG0066	3-isopropylmalate dehydratase activity
CQJ30_14540	COG0065	Catalyzes the isomerization between 2-isopropylmalate and 3-isopropylmalate, via the formation of 2-isopropylmaleate
CQJ30_14545	COG0473	3-isopropylmalate dehydrogenase activity
CQJ30_14550	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CQJ30_14555	COG0385	Bile acid
CQJ30_14565	COG0028	Belongs to the TPP enzyme family
CQJ30_14570	COG0440	acetolactate synthase activity
CQJ30_14575	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
CQJ30_14580	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
CQJ30_14585	COG2848	UPF0210 protein
CQJ30_14590	COG3830	Belongs to the UPF0237 family
CQJ30_14595	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
CQJ30_14615	COG2879	small protein
CQJ30_14635	COG2207	Transcriptional regulator
CQJ30_14660	COG0693	protein deglycase activity
CQJ30_14665	COG2971	BadF BadG BcrA BcrD
CQJ30_14670	COG0165	Argininosuccinate lyase
CQJ30_14675	COG4149	molybdate abc transporter
CQJ30_14685	COG1840	ABC-type Fe3 transport system, periplasmic component
CQJ30_14715	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CQJ30_14720	COG2190	(PTS) system
CQJ30_14730	COG1979	alcohol dehydrogenase
CQJ30_14740	COG2155	Conserved Protein
CQJ30_14745	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
CQJ30_14750	COG1098	S1 RNA binding domain
CQJ30_14760	COG2267	carboxylic ester hydrolase activity
CQJ30_14765	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
CQJ30_14775	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
CQJ30_14780	COG0367	asparagine synthase
CQJ30_14795	COG3328	transposase activity
CQJ30_14805	COG2814	Major facilitator Superfamily
CQJ30_14810	COG2050	protein possibly involved in aromatic compounds catabolism
CQJ30_14820	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CQJ30_14835	COG2212	antiporter activity
CQJ30_14840	COG1863	multisubunit Na H antiporter MnhE subunit
CQJ30_14845	COG0651	ATP synthesis coupled electron transport
CQJ30_14850	COG1006	Multisubunit Na H antiporter MnhC subunit
CQJ30_14860	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
CQJ30_14860	COG2111	Na H antiporter
CQJ30_14870	COG0582	viral genome integration into host DNA
CQJ30_14875	COG0039	L-malate dehydrogenase activity
CQJ30_14880	COG2814	Major facilitator Superfamily
CQJ30_14895	COG2718	Belongs to the UPF0229 family
CQJ30_14900	COG2766	serine protein kinase
CQJ30_14905	COG0778	Nitroreductase
CQJ30_14920	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
CQJ30_14925	COG3584	3D domain protein
CQJ30_14935	COG0492	ferredoxin-NADP+ reductase activity
CQJ30_14940	COG0316	Belongs to the HesB IscA family
CQJ30_14945	COG1252	NADH dehydrogenase
CQJ30_14950	COG4837	Protein of unknown function (DUF1462)
CQJ30_14955	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
CQJ30_14960	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
CQJ30_14965	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
CQJ30_14970	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
CQJ30_14975	COG0647	UMP catabolic process
CQJ30_14980	COG2445	Protein of unknown function DUF86
CQJ30_14985	COG4470	Protein conserved in bacteria
CQJ30_14990	COG0739	heme binding
CQJ30_15000	COG0559	Belongs to the binding-protein-dependent transport system permease family
CQJ30_15010	COG0411	ABC transporter
CQJ30_15030	COG3377	Domain of unknown function (DUF1805)
CQJ30_15035	COG0737	Belongs to the 5'-nucleotidase family
CQJ30_15040	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
CQJ30_15050	COG0719	Fe-S assembly protein
CQJ30_15055	COG0822	iron-sulfur transferase activity
CQJ30_15060	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
CQJ30_15065	COG0719	Fe-S assembly protein
CQJ30_15070	COG0396	ATPase activity
CQJ30_15075	COG1464	Belongs to the NlpA lipoprotein family
CQJ30_15080	COG2011	ABC-type metal ion transport system permease component
CQJ30_15085	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CQJ30_15095	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
CQJ30_15100	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
CQJ30_15105	COG0509	glycine decarboxylation via glycine cleavage system
CQJ30_15110	COG1393	Belongs to the ArsC family
CQJ30_15115	COG1960	acyl-CoA dehydrogenase activity
CQJ30_15120	COG0183	Belongs to the thiolase family
CQJ30_15125	COG1024	Enoyl-CoA hydratase
CQJ30_15125	COG1250	3-hydroxyacyl-CoA dehydrogenase
CQJ30_15135	COG5577	PFAM Coat F domain
CQJ30_15140	COG0628	permease
CQJ30_15145	COG4844	belongs to the
CQJ30_15160	COG1131	(ABC) transporter
CQJ30_15170	COG1595	DNA-templated transcription, initiation
CQJ30_15180	COG1126	abc transporter atp-binding protein
CQJ30_15190	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
CQJ30_15210	COG2096	Adenosyltransferase
CQJ30_15220	COG0368	Joins adenosylcobinamide-GDP and alpha-ribazole to generate adenosylcobalamin (Ado-cobalamin). Also synthesizes adenosylcobalamin 5'-phosphate from adenosylcobinamide-GDP and alpha-ribazole 5'-phosphate
CQJ30_15240	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
CQJ30_15245	COG1270	Converts cobyric acid to cobinamide by the addition of aminopropanol on the F carboxylic group
CQJ30_15250	COG1120	ATPase activity
CQJ30_15255	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
CQJ30_15260	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
CQJ30_15270	COG0697	spore germination
CQJ30_15290	COG1136	(ABC) transporter
CQJ30_15295	COG0577	efflux transmembrane transporter activity
CQJ30_15295	COG1136	(ABC) transporter
CQJ30_15310	COG0456	acetyltransferase
CQJ30_15355	COG2304	oxidoreductase activity
CQJ30_15390	COG0561	phosphatase activity
CQJ30_15400	COG2309	aminopeptidase activity
CQJ30_15405	COG1090	epimerase
CQJ30_15410	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
CQJ30_15420	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CQJ30_15440	COG0519	Catalyzes the synthesis of GMP from XMP
CQJ30_15450	COG1609	Transcriptional regulator
CQJ30_15455	COG1131	(ABC) transporter
CQJ30_15465	COG1280	lysine exporter protein (LysE YggA)
CQJ30_15475	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
CQJ30_15485	COG1476	TRANSCRIPTIONal
CQJ30_15490	COG0697	spore germination
CQJ30_15495	COG0577	efflux transmembrane transporter activity
CQJ30_15495	COG1136	(ABC) transporter
CQJ30_15500	COG1136	(ABC) transporter
CQJ30_15505	COG5002	protein histidine kinase activity
CQJ30_15505	COG3850	Histidine kinase
CQJ30_15510	COG0745	RESPONSE REGULATOR receiver
CQJ30_15515	COG1051	belongs to the nudix hydrolase family
CQJ30_15545	COG0745	RESPONSE REGULATOR receiver
CQJ30_15550	COG5002	protein histidine kinase activity
CQJ30_15555	COG1136	(ABC) transporter
CQJ30_15560	COG0577	efflux transmembrane transporter activity
CQJ30_15570	COG0840	transmembrane signaling receptor activity
CQJ30_15630	COG4372	Transposase
CQJ30_15695	COG3711	transcriptional antiterminator
CQJ30_15695	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CQJ30_15700	COG2723	6-phospho-beta-galactosidase activity
CQJ30_15705	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CQJ30_15705	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CQJ30_15720	COG1447	Phosphotransferase system cellobiose-specific component IIA
CQJ30_15725	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
CQJ30_15735	COG1405	negative regulation of cell septum assembly
CQJ30_15735	COG3012	SEC-C Motif Domain Protein
CQJ30_15745	COG0691	Required for rescue of stalled ribosomes mediated by trans-translation. Binds to transfer-messenger RNA (tmRNA), required for stable association of tmRNA with ribosomes. tmRNA and SmpB together mimic tRNA shape, replacing the anticodon stem-loop with SmpB. tmRNA is encoded by the ssrA gene
CQJ30_15755	COG0557	exoribonuclease II activity
CQJ30_15760	COG1647	Serine aminopeptidase, S33
CQJ30_15765	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
CQJ30_15795	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
CQJ30_15800	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
CQJ30_15825	COG0148	phosphopyruvate hydratase activity
CQJ30_15835	COG0149	triose-phosphate isomerase activity
CQJ30_15840	COG0126	phosphoglycerate kinase activity
CQJ30_15845	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
CQJ30_15860	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
CQJ30_15875	COG0740	serine-type endopeptidase activity
CQJ30_15880	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
CQJ30_15890	COG0391	Required for morphogenesis under gluconeogenic growth conditions
CQJ30_15895	COG1660	Displays ATPase and GTPase activities
CQJ30_15900	COG1051	belongs to the nudix hydrolase family
CQJ30_15905	COG0492	ferredoxin-NADP+ reductase activity
CQJ30_15910	COG0457	Tetratricopeptide repeat
CQJ30_15915	COG0110	maltose O-acetyltransferase activity
CQJ30_15920	COG0546	phosphoglycolate phosphatase activity
CQJ30_15925	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
CQJ30_15935	COG1493	Catalyzes the ATP- as well as the pyrophosphate- dependent phosphorylation of a specific serine residue in HPr, a phosphocarrier protein of the phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS). HprK P also catalyzes the pyrophosphate-producing, inorganic phosphate-dependent dephosphorylation (phosphorolysis) of seryl-phosphorylated HPr (P- Ser-HPr). The two antagonistic activities of HprK P are regulated by several intracellular metabolites, which change their concentration in response to the absence or presence of rapidly metabolisable carbon sources (glucose, fructose, etc.) in the growth medium. Therefore, by controlling the phosphorylation state of HPr, HPrK P is a sensor enzyme that plays a major role in the regulation of carbon metabolism and sugar transport it mediates carbon catabolite repression (CCR), and regulates PTS-catalyzed carbohydrate uptake and inducer exclusion
CQJ30_15955	COG0640	Transcriptional regulator
CQJ30_15960	COG2195	Cleaves the N-terminal amino acid of tripeptides
CQJ30_15970	COG0653	protein targeting
CQJ30_16045	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
CQJ30_16050	COG0556	nucleotide-excision repair
CQJ30_16055	COG4897	Protein conserved in bacteria
CQJ30_16065	COG1033	growth of symbiont in host cell
CQJ30_16065	COG2409	Drug exporters of the RND superfamily
CQJ30_16070	COG1846	Transcriptional regulator
CQJ30_16075	COG2217	Heavy metal translocating P-type atpase
CQJ30_16080	COG2608	mercury ion transmembrane transporter activity
CQJ30_16095	COG1924	4 iron, 4 sulfur cluster binding
CQJ30_16105	COG0346	lactoylglutathione lyase activity
CQJ30_16125	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
CQJ30_16130	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CQJ30_16135	COG0793	Belongs to the peptidase S41A family
CQJ30_16135	COG3409	Peptidoglycan-binding domain 1 protein
CQJ30_16145	COG0217	transcriptional regulatory protein
CQJ30_16150	COG0791	NLP P60 protein
CQJ30_16150	COG3883	PFAM NLP P60 protein
CQJ30_16155	COG2177	Part of the ABC transporter FtsEX involved in
CQJ30_16160	COG2884	Cell division ATP-binding protein ftsE
CQJ30_16170	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
CQJ30_16180	COG0653	protein targeting
CQJ30_16195	COG1516	flagellar protein fliS
CQJ30_16200	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
CQJ30_16205	COG1334	flagellar protein FlaG
CQJ30_16215	COG2807	transmembrane transport
CQJ30_16225	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
CQJ30_16230	COG0598	Magnesium transport protein CorA
CQJ30_16235	COG0477	Major facilitator Superfamily
CQJ30_16250	COG1254	Belongs to the acylphosphatase family
CQJ30_16255	COG0840	transmembrane signaling receptor activity
CQJ30_16275	COG4372	Transposase
CQJ30_16295	COG0463	Glycosyl transferase, family 2
CQJ30_16295	COG0457	Tetratricopeptide repeat
CQJ30_16300	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CQJ30_16310	COG1699	Binds to the C-terminal region of flagellin, which is implicated in polymerization, and participates in the assembly of the flagellum
CQJ30_16320	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
CQJ30_16325	COG4786	Flagellar basal body rod
CQJ30_16325	COG1256	bacterial-type flagellum assembly
CQJ30_16335	COG2747	anti-sigma28 factor FlgM
CQJ30_16345	COG1040	competence protein
CQJ30_16360	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
CQJ30_16380	COG1307	EDD domain protein, DegV family
CQJ30_16385	COG3328	transposase activity
CQJ30_16390	COG3328	transposase activity
CQJ30_16400	COG2197	response regulator
CQJ30_16405	COG4585	Histidine kinase
CQJ30_16410	COG1739	Uncharacterized protein family UPF0029
CQJ30_16415	COG3764	Sortase (surface protein transpeptidase)
CQJ30_16420	COG2770	Histidine kinase
CQJ30_16420	COG3437	response regulator, receiver
CQJ30_16425	COG1316	TRANSCRIPTIONal
CQJ30_16435	COG4152	abc transporter atp-binding protein
CQJ30_16440	COG0508	dehydrogenase complex catalyzes the overall conversion of
CQJ30_16445	COG0567	Dehydrogenase, E1 component
CQJ30_16455	COG0692	Excises uracil residues from the DNA which can arise as a result of misincorporation of dUMP residues by DNA polymerase or due to deamination of cytosine
CQJ30_16460	COG0561	phosphatase activity
CQJ30_16470	COG1024	Enoyl-CoA hydratase
CQJ30_16485	COG0183	Belongs to the thiolase family
CQJ30_16495	COG1024	Enoyl-CoA hydratase
CQJ30_16500	COG1028	Short-chain dehydrogenase reductase Sdr
CQJ30_16510	COG1522	sequence-specific DNA binding
CQJ30_16515	COG0436	Aminotransferase
CQJ30_16525	COG1473	amidohydrolase
CQJ30_16530	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
CQJ30_16560	COG1464	Belongs to the NlpA lipoprotein family
CQJ30_16565	COG2011	ABC-type metal ion transport system permease component
CQJ30_16570	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
CQJ30_16580	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
CQJ30_16585	COG0436	Aminotransferase
CQJ30_16590	COG0095	Lipoate-protein ligase
CQJ30_16595	COG0320	Catalyzes the radical-mediated insertion of two sulfur atoms into the C-6 and C-8 positions of the octanoyl moiety bound to the lipoyl domains of lipoate-dependent enzymes, thereby converting the octanoylated domains into lipoylated derivatives
CQJ30_16605	COG3328	transposase activity
CQJ30_16615	COG2814	Major facilitator Superfamily
CQJ30_16620	COG0083	homoserine kinase activity
CQJ30_16625	COG0498	Catalyzes the gamma-elimination of phosphate from L- phosphohomoserine and the beta-addition of water to produce L- threonine
CQJ30_16630	COG0460	homoserine dehydrogenase
CQJ30_16635	COG4492	Belongs to the UPF0735 family
CQJ30_16640	COG0840	transmembrane signaling receptor activity
CQJ30_16645	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CQJ30_16650	COG1609	Transcriptional regulator
CQJ30_16665	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
CQJ30_16675	COG0363	glucosamine-6-phosphate deaminase activity
CQJ30_16680	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
CQJ30_16685	COG1737	Transcriptional regulator
CQJ30_16690	COG3010	Converts N-acetylmannosamine-6-phosphate (ManNAc-6-P) to N-acetylglucosamine-6-phosphate (GlcNAc-6-P)
CQJ30_16715	COG2249	NAD(P)H dehydrogenase (quinone) activity
CQJ30_16730	COG3142	Participates in the control of copper homeostasis
CQJ30_16770	COG0379	Catalyzes the condensation of iminoaspartate with dihydroxyacetone phosphate to form quinolinate
CQJ30_16775	COG0157	Belongs to the NadC ModD family
CQJ30_16780	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
CQJ30_16785	COG1104	cysteine desulfurase activity
CQJ30_16790	COG1827	regulation of RNA biosynthetic process
CQJ30_16795	COG1914	H( )-stimulated, divalent metal cation uptake system
CQJ30_16800	COG3949	Membrane
CQJ30_16810	COG1063	alcohol dehydrogenase
CQJ30_16815	COG1486	melibiose metabolic process
CQJ30_16835	COG1447	Phosphotransferase system cellobiose-specific component IIA
CQJ30_16845	COG2971	BadF BadG BcrA BcrD
CQJ30_16855	COG2103	Specifically catalyzes the cleavage of the D-lactyl ether substituent of MurNAc 6-phosphate, producing GlcNAc 6- phosphate and D-lactate
CQJ30_16860	COG1737	Transcriptional regulator
CQJ30_16865	COG1649	PFAM Uncharacterised BCR, COG1649
CQJ30_16875	COG2723	6-phospho-beta-galactosidase activity
CQJ30_16885	COG0395	ABC-type sugar transport system, permease component
CQJ30_16895	COG1653	transport
CQJ30_16905	COG4821	SIS domain
CQJ30_16930	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
CQJ30_16935	COG0554	Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate
CQJ30_16940	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
CQJ30_16945	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
CQJ30_16950	COG0840	transmembrane signaling receptor activity
CQJ30_16965	COG0673	inositol 2-dehydrogenase activity
CQJ30_16970	COG0561	phosphatase activity
CQJ30_16975	COG0626	cystathionine gamma-synthase activity
CQJ30_16980	COG0626	cystathionine gamma-synthase activity
CQJ30_16995	COG4720	Psort location CytoplasmicMembrane, score
CQJ30_17005	COG1940	carbohydrate kinase activity
CQJ30_17010	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CQJ30_17015	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
CQJ30_17025	COG2723	6-phospho-beta-galactosidase activity
CQJ30_17030	COG3711	transcriptional antiterminator
CQJ30_17030	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CQJ30_17040	COG3290	protein histidine kinase activity
CQJ30_17040	COG3829	transcription factor binding
CQJ30_17045	COG1012	belongs to the aldehyde dehydrogenase family
CQJ30_17050	COG0506	proline dehydrogenase activity
CQJ30_17065	COG3835	regulator
CQJ30_17080	COG2508	Transcriptional regulator
CQJ30_17080	COG4465	DNA-binding protein that represses the expression of many genes that are induced as cells make the transition from rapid exponential growth to stationary phase. It is a GTP-binding protein that senses the intracellular GTP concentration as an indicator of nutritional limitations. At low GTP concentration it no longer binds GTP and stop to act as a transcriptional repressor
CQJ30_17085	COG1929	Belongs to the glycerate kinase type-1 family
CQJ30_17090	COG2610	gluconate transmembrane transporter activity
CQJ30_17100	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
CQJ30_17110	COG3708	Transcriptional regulator
CQJ30_17110	COG2207	Transcriptional regulator
CQJ30_17115	COG1482	cell wall glycoprotein biosynthetic process
CQJ30_17135	COG3069	C4-dicarboxylate transmembrane transporter activity
CQJ30_17140	COG0737	Belongs to the 5'-nucleotidase family
CQJ30_17145	COG0172	Catalyzes the attachment of serine to tRNA(Ser). Is also able to aminoacylate tRNA(Sec) with serine, to form the misacylated tRNA L-seryl-tRNA(Sec), which will be further converted into selenocysteinyl-tRNA(Sec)
CQJ30_17155	COG1760	l-serine dehydratase
CQJ30_17160	COG1760	l-serine dehydratase
CQJ30_17165	COG0814	amino acid
CQJ30_17170	COG3584	3D domain protein
CQJ30_17170	COG1388	LysM domain
CQJ30_17170	COG3584	3D domain protein
CQJ30_17170	COG1388	LysM domain
CQJ30_17215	COG2076	Multidrug Resistance protein
CQJ30_17220	COG2076	Multidrug Resistance protein
CQJ30_17235	COG1952	One of the proteins required for the normal export of preproteins out of the cell cytoplasm. It is a molecular chaperone that binds to a subset of precursor proteins, maintaining them in a translocation-competent state. It also specifically binds to its receptor SecA
CQJ30_17240	COG4336	lyase activity
CQJ30_17245	COG1914	H( )-stimulated, divalent metal cation uptake system
CQJ30_17250	COG1540	5-oxoprolinase (ATP-hydrolyzing) activity
CQJ30_17255	COG1984	allophanate hydrolase subunit 2
CQJ30_17260	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
CQJ30_17305	COG3833	ABC-type maltose transport systems, permease component
CQJ30_17325	COG1282	The transhydrogenation between NADH and NADP is coupled to respiration and ATP hydrolysis and functions as a proton pump across the membrane
CQJ30_17330	COG3288	NAD(P)+ transhydrogenase (AB-specific) activity
CQJ30_17355	COG3177	Filamentation induced by cAMP protein fic
CQJ30_17370	COG3711	transcriptional antiterminator
CQJ30_17375	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CQJ30_17380	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CQJ30_17385	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CQJ30_17385	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CQJ30_17415	COG0191	fructose-bisphosphate aldolase activity
CQJ30_17440	COG1063	alcohol dehydrogenase
CQJ30_17445	COG3716	PTS system mannose fructose sorbose family IID component
CQJ30_17450	COG3715	PTS system
CQJ30_17455	COG3444	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
CQJ30_17485	COG4948	Mandelate Racemase Muconate Lactonizing
CQJ30_17515	COG0191	fructose-bisphosphate aldolase activity
CQJ30_17520	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CQJ30_17520	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CQJ30_17525	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
CQJ30_17530	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CQJ30_17560	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
CQJ30_17575	COG1349	DNA-binding transcription factor activity
CQJ30_17585	COG1216	Glycosyl transferase, family 2
CQJ30_17590	COG0438	transferase activity, transferring glycosyl groups
CQJ30_17600	COG0438	transferase activity, transferring glycosyl groups
CQJ30_17605	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
CQJ30_17620	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
CQJ30_17625	COG1086	Polysaccharide biosynthesis protein
CQJ30_17630	COG1210	Utp--glucose-1-phosphate uridylyltransferase
CQJ30_17635	COG4464	protein tyrosine phosphatase activity
CQJ30_17640	COG0489	protein tyrosine kinase activity
CQJ30_17645	COG3944	biosynthesis protein
CQJ30_17665	COG0038	chloride channel
CQJ30_17675	COG0737	Belongs to the 5'-nucleotidase family
CQJ30_17720	COG1316	TRANSCRIPTIONal
CQJ30_17725	COG1368	sulfuric ester hydrolase activity
CQJ30_17735	COG2246	polysaccharide biosynthetic process
CQJ30_17775	COG0860	N-Acetylmuramoyl-L-alanine amidase
CQJ30_17775	COG2247	cell wall binding repeat
CQJ30_17780	COG4193	domain, Protein
CQJ30_17800	COG0463	Glycosyl transferase, family 2
CQJ30_17800	COG1216	Glycosyl transferase, family 2
CQJ30_17825	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
CQJ30_17840	COG1091	dTDP-4-dehydrorhamnose reductase activity
CQJ30_17850	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CQJ30_17855	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
CQJ30_17860	COG1210	Utp--glucose-1-phosphate uridylyltransferase
CQJ30_17870	COG4715	Zinc finger, swim domain protein
CQJ30_17875	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
CQJ30_17910	COG0629	single-stranded DNA binding
CQJ30_17925	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
CQJ30_17935	COG4786	Flagellar basal body rod
CQJ30_17940	COG4786	Flagellar basal body rod
CQJ30_17945	COG1077	Cell shape determining protein MreB Mrl
CQJ30_17950	COG1609	Transcriptional regulator
CQJ30_17955	COG0739	heme binding
CQJ30_17965	COG2385	sporulation resulting in formation of a cellular spore
CQJ30_17975	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
CQJ30_17985	COG4836	Membrane
CQJ30_17995	COG0055	Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
CQJ30_18000	COG0224	Produces ATP from ADP in the presence of a proton gradient across the membrane. The gamma chain is believed to be important in regulating ATPase activity and the flow of protons through the CF(0) complex
CQJ30_18005	COG0056	Produces ATP from ADP in the presence of a proton gradient across the membrane. The alpha chain is a regulatory subunit
CQJ30_18010	COG0712	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CQJ30_18020	COG0636	F(1)F(0) ATP synthase produces ATP from ADP in the presence of a proton or sodium gradient. F-type ATPases consist of two structural domains, F(1) containing the extramembraneous catalytic core and F(0) containing the membrane proton channel, linked together by a central stalk and a peripheral stalk. During catalysis, ATP synthesis in the catalytic domain of F(1) is coupled via a rotary mechanism of the central stalk subunits to proton translocation
CQJ30_18025	COG0356	it plays a direct role in the translocation of protons across the membrane
CQJ30_18035	COG1404	Belongs to the peptidase S8 family
CQJ30_18050	COG2059	Chromate
CQJ30_18055	COG2059	Chromate
CQJ30_18070	COG0601	transmembrane transport
CQJ30_18080	COG0747	negative chemotaxis
CQJ30_18085	COG0444	Belongs to the ABC transporter superfamily
CQJ30_18090	COG4608	Belongs to the ABC transporter superfamily
CQJ30_18095	COG0035	Catalyzes the conversion of uracil and 5-phospho-alpha- D-ribose 1-diphosphate (PRPP) to UMP and diphosphate
CQJ30_18110	COG0112	Catalyzes the reversible interconversion of serine and glycine with tetrahydrofolate (THF) serving as the one-carbon carrier. This reaction serves as the major source of one-carbon groups required for the biosynthesis of purines, thymidylate, methionine, and other important biomolecules. Also exhibits THF- independent aldolase activity toward beta-hydroxyamino acids, producing glycine and aldehydes, via a retro-aldol mechanism
CQJ30_18115	COG4475	Protein of unknown function (DUF436)
CQJ30_18120	COG0698	ribose 5-phosphate isomerase
CQJ30_18125	COG0840	transmembrane signaling receptor activity
CQJ30_18135	COG1971	Probably functions as a manganese efflux pump
CQJ30_18140	COG0009	L-threonylcarbamoyladenylate synthase
CQJ30_18155	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
CQJ30_18160	COG1435	thymidine kinase activity
CQJ30_18165	COG0254	rRNA binding
CQJ30_18170	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
CQJ30_18175	COG1494	fructose-1,6-bisphosphatase
CQJ30_18180	COG0766	Cell wall formation. Adds enolpyruvyl to UDP-N- acetylglucosamine
CQJ30_18185	COG0191	fructose-bisphosphate aldolase activity
CQJ30_18190	COG2204	response regulator
CQJ30_18215	COG5002	protein histidine kinase activity
CQJ30_18250	COG0504	CTP synthase activity
CQJ30_18255	COG3343	RNA polymerase activity
CQJ30_18260	COG1703	isobutyryl-CoA mutase activity
CQJ30_18260	COG1884	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
CQJ30_18260	COG2185	Catalyzes the reversible interconversion of isobutyryl- CoA and n-butyryl-CoA, using radical chemistry. Also exhibits GTPase activity, associated with its G-protein domain (MeaI) that functions as a chaperone that assists cofactor delivery and proper holo-enzyme assembly
CQJ30_18270	COG1960	acyl-CoA dehydrogenase activity
CQJ30_18275	COG1960	acyl-CoA dehydrogenase activity
CQJ30_18280	COG1250	3-hydroxyacyl-CoA dehydrogenase
CQJ30_18285	COG0183	Belongs to the thiolase family
CQJ30_18290	COG0247	lactate metabolic process
CQJ30_18290	COG2181	nitrate reductase activity
CQJ30_18295	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
CQJ30_18305	COG0018	arginyl-trna synthetase
CQJ30_18315	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
CQJ30_18325	COG1994	Peptidase M50
CQJ30_18330	COG1942	4-Oxalocrotonate Tautomerase
CQJ30_18335	COG3465	dGTPase activity
CQJ30_18340	COG1078	dGTPase activity
CQJ30_18370	COG0095	Lipoate-protein ligase
CQJ30_18375	COG0280	phosphate acetyltransferase
CQJ30_18385	COG3773	Cell wall hydrolase
CQJ30_18395	COG2363	Small membrane protein
CQJ30_18405	COG0421	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
CQJ30_18455	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
CQJ30_18470	COG1960	acyl-CoA dehydrogenase activity
CQJ30_18475	COG0318	PFAM AMP-dependent synthetase and ligase
CQJ30_18485	COG0366	Alpha amylase catalytic
CQJ30_18490	COG1609	Transcriptional regulator
CQJ30_18510	COG0179	Fumarylacetoacetate (FAA) hydrolase
CQJ30_18515	COG1363	Peptidase, m42
CQJ30_18545	COG0427	acetyl-CoA hydrolase
CQJ30_18585	COG4166	transmembrane transport
CQJ30_18590	COG1253	flavin adenine dinucleotide binding
CQJ30_18595	COG0589	response to stress
CQJ30_18605	COG0463	Glycosyl transferase, family 2
CQJ30_18610	COG1823	symporter activity
CQJ30_18615	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
CQJ30_18620	COG1024	Enoyl-CoA hydratase
CQJ30_18625	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
CQJ30_18630	COG0511	ligase activity, forming carbon-carbon bonds
CQJ30_18635	COG0439	Biotin carboxylase
CQJ30_18640	COG0318	PFAM AMP-dependent synthetase and ligase
CQJ30_18645	COG1960	acyl-CoA dehydrogenase activity
CQJ30_18650	COG1309	transcriptional regulator
CQJ30_18655	COG0583	DNA-binding transcription factor activity
CQJ30_18665	COG1442	glycosyl transferase family 8
CQJ30_18670	COG2195	Cleaves the N-terminal amino acid of tripeptides
CQJ30_18675	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
CQJ30_18680	COG3162	membrane
CQJ30_18750	COG4608	Belongs to the ABC transporter superfamily
CQJ30_18755	COG0444	Belongs to the ABC transporter superfamily
CQJ30_18760	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
CQJ30_18765	COG0601	transmembrane transport
CQJ30_18770	COG4166	transmembrane transport
CQJ30_18780	COG0753	catalase activity
CQJ30_18795	COG0450	alkyl hydroperoxide reductase
CQJ30_18800	COG3634	alkyl hydroperoxide reductase activity
CQJ30_18805	COG1489	DNA binding
CQJ30_18810	COG0579	oxidoreductase
CQJ30_18835	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
CQJ30_18850	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
CQJ30_18855	COG1576	Specifically methylates the pseudouridine at position 1915 (m3Psi1915) in 23S rRNA
CQJ30_18860	COG2270	Major facilitator Superfamily
CQJ30_18870	COG0745	RESPONSE REGULATOR receiver
CQJ30_18875	COG2205	protein histidine kinase activity
CQJ30_18890	COG1131	(ABC) transporter
CQJ30_18900	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
CQJ30_18905	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
CQJ30_18910	COG4853	Protein conserved in bacteria
CQJ30_18915	COG4863	YycH protein
CQJ30_18920	COG5002	protein histidine kinase activity
CQJ30_18925	COG0745	RESPONSE REGULATOR receiver
CQJ30_18930	COG1388	LysM domain
CQJ30_18930	COG4942	peptidase
CQJ30_18940	COG0305	Participates in initiation and elongation during chromosome replication
CQJ30_18945	COG0359	binds to the 23S rRNA
CQJ30_18950	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
CQJ30_18960	COG0238	Binds as a heterodimer with protein S6 to the central domain of the 16S rRNA, where it helps stabilize the platform of the 30S subunit
CQJ30_18965	COG0629	single-stranded DNA binding
CQJ30_18970	COG0360	Binds together with S18 to 16S ribosomal RNA
CQJ30_18980	COG0508	dehydrogenase complex catalyzes the overall conversion of
CQJ30_18985	COG0022	dehydrogenase e1 component
CQJ30_18990	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
CQJ30_18995	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
CQJ30_19000	COG3284	Transcriptional regulator
CQJ30_19005	COG0012	GTP binding
CQJ30_19010	COG4481	Protein conserved in bacteria
CQJ30_19025	COG1475	DNA binding
CQJ30_19030	COG1192	Involved in chromosome partitioning
CQJ30_19045	COG1475	DNA binding
CQJ30_19050	COG0357	Ribosomal RNA small subunit methyltransferase G
CQJ30_19055	COG0445	tRNA wobble uridine modification
CQJ30_19060	COG0486	Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34
CQJ30_19065	COG1847	R3H domain protein
CQJ30_19080	COG0230	Belongs to the bacterial ribosomal protein bL34 family