CQJ30_00005 SM00382 ATPases associated with a variety of cellular activities CQJ30_00005 SM00760 Bacterial dnaA protein helix-turn-helix domain CQJ30_00010 SM00480 DNA polymerase III beta subunit CQJ30_00025 SM00387 Histidine kinase-like ATPases CQJ30_00025 SM00433 TopoisomeraseII CQJ30_00030 SM00434 DNA Topoisomerase IV CQJ30_00080 SM00116 Domain in cystathionine beta-synthase and other proteins. CQJ30_00080 SM01240 CQJ30_00080 CQJ30_00085 SM00936 Penicillin-binding protein 5, C-terminal domain CQJ30_00110 SM00257 Lysin motif CQJ30_00110 SM00636 CQJ30_00110 CQJ30_00125 SM00382 ATPases associated with a variety of cellular activities CQJ30_00135 SM00493 CQJ30_00135 CQJ30_00200 SM00465 GIY-YIG type nucleases (URI domain) CQJ30_00210 SM00966 SpoVT / AbrB like domain CQJ30_00240 SM01208 CQJ30_00240 CQJ30_00245 SM00493 CQJ30_00245 CQJ30_00250 SM00650 Ribosomal RNA adenine dimethylases CQJ30_00290 SM01400 CQJ30_00290 CQJ30_00310 SM00487 DEAD-like helicases superfamily CQJ30_00310 SM00490 helicase superfamily c-terminal domain CQJ30_00310 SM00982 CQJ30_00310 CQJ30_00310 SM01058 CarD-like/TRCF domain CQJ30_00315 SM00966 SpoVT / AbrB like domain CQJ30_00330 SM00363 S4 RNA-binding domain CQJ30_00350 SM00316 Ribosomal protein S1-like RNA-binding domain CQJ30_00365 SM00331 Sigma factor PP2C-like phosphatases CQJ30_00375 SM00220 Serine/Threonine protein kinases, catalytic domain CQJ30_00380 SM00977 TilS substrate C-terminal domain CQJ30_00390 SM00382 ATPases associated with a variety of cellular activities CQJ30_00415 SM00905 Dihydroneopterin aldolase CQJ30_00425 SM00530 Helix-turn-helix XRE-family like proteins CQJ30_00435 SM00354 helix_turn _helix lactose operon repressor CQJ30_00440 SM00642 Alpha-amylase domain CQJ30_00470 SM00642 Alpha-amylase domain CQJ30_00560 SM00382 ATPases associated with a variety of cellular activities CQJ30_00560 SM01086 C-terminal, D2-small domain, of ClpB protein CQJ30_00565 SM00382 ATPases associated with a variety of cellular activities CQJ30_00570 SM00670 Large family of predicted nucleotide-binding domains CQJ30_00595 SM00840 CQJ30_00595 CQJ30_00600 SM00535 Ribonuclease III family CQJ30_00605 SM00967 RNA 2'-O ribose methyltransferase substrate binding CQJ30_00615 SM00421 helix_turn_helix, Lux Regulon CQJ30_00630 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. CQJ30_00630 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CQJ30_00635 SM00649 Ribosomal protein L11/L12 CQJ30_00665 SM00663 RNA polymerase I subunit A N-terminus CQJ30_00685 SM00838 Elongation factor G C-terminus CQJ30_00685 SM00889 Elongation factor G, domain IV CQJ30_00695 SM01403 CQJ30_00695 CQJ30_00715 SM01382 CQJ30_00715 CQJ30_00715 SM01383 CQJ30_00715 CQJ30_00730 SM00322 K homology RNA-binding domain CQJ30_00750 SM01374 CQJ30_00750 CQJ30_00755 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. CQJ30_00815 SM00316 Ribosomal protein S1-like RNA-binding domain CQJ30_00835 SM00662 RNA polymerases D CQJ30_00850 SM00382 ATPases associated with a variety of cellular activities CQJ30_00855 SM00382 ATPases associated with a variety of cellular activities CQJ30_00905 SM00155 Phospholipase D. Active site motifs. CQJ30_00910 SM00257 Lysin motif CQJ30_00915 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CQJ30_01085 SM00382 ATPases associated with a variety of cellular activities CQJ30_01145 SM00327 von Willebrand factor (vWF) type A domain CQJ30_01185 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQJ30_01190 SM01321 CQJ30_01190 CQJ30_01230 SM00382 ATPases associated with a variety of cellular activities CQJ30_01235 SM00382 ATPases associated with a variety of cellular activities CQJ30_01240 SM00849 Metallo-beta-lactamase superfamily CQJ30_01255 SM00382 ATPases associated with a variety of cellular activities CQJ30_01305 SM00646 CQJ30_01305 CQJ30_01330 SM01251 CQJ30_01330 CQJ30_01475 SM00530 Helix-turn-helix XRE-family like proteins CQJ30_01485 SM00650 Ribosomal RNA adenine dimethylases CQJ30_01495 SM00994 ClpX C4-type zinc finger CQJ30_01505 SM00530 Helix-turn-helix XRE-family like proteins CQJ30_01525 SM00387 Histidine kinase-like ATPases CQJ30_01530 SM00448 cheY-homologous receiver domain CQJ30_01530 SM00862 Transcriptional regulatory protein, C terminal CQJ30_01535 SM00382 ATPases associated with a variety of cellular activities CQJ30_01560 SM00382 ATPases associated with a variety of cellular activities CQJ30_01570 SM00344 helix_turn_helix ASNC type CQJ30_01645 SM00530 Helix-turn-helix XRE-family like proteins CQJ30_01725 SM00382 ATPases associated with a variety of cellular activities CQJ30_01730 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQJ30_01760 SM00530 Helix-turn-helix XRE-family like proteins CQJ30_01785 SM01321 CQJ30_01785 CQJ30_01830 SM00382 ATPases associated with a variety of cellular activities CQJ30_01880 SM00822 CQJ30_01880 CQJ30_01900 SM01207 CQJ30_01900 CQJ30_01920 SM01350 CQJ30_01920 CQJ30_01995 SM00857 Resolvase, N terminal domain CQJ30_02035 SM00450 Rhodanese Homology Domain CQJ30_02045 SM00450 Rhodanese Homology Domain CQJ30_02045 SM00849 Metallo-beta-lactamase superfamily CQJ30_02065 SM00450 Rhodanese Homology Domain CQJ30_02070 SM00450 Rhodanese Homology Domain CQJ30_02090 SM00490 helicase superfamily c-terminal domain CQJ30_02135 SM00062 Bacterial periplasmic substrate-binding proteins CQJ30_02140 SM00382 ATPases associated with a variety of cellular activities CQJ30_02215 SM00100 Cyclic nucleotide-monophosphate binding domain CQJ30_02215 SM00419 helix_turn_helix, cAMP Regulatory protein CQJ30_02250 SM00852 Probable molybdopterin binding domain CQJ30_02260 SM00100 Cyclic nucleotide-monophosphate binding domain CQJ30_02260 SM00419 helix_turn_helix, cAMP Regulatory protein CQJ30_02280 SM00852 Probable molybdopterin binding domain CQJ30_02290 SM00729 Elongator protein 3, MiaB family, Radical SAM CQJ30_02310 SM01350 CQJ30_02310 CQJ30_02385 SM00028 Tetratricopeptide repeats CQJ30_02405 SM00926 Molybdopterin oxidoreductase Fe4S4 domain CQJ30_02425 SM00382 ATPases associated with a variety of cellular activities CQJ30_02445 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQJ30_02460 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CQJ30_02460 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CQJ30_02460 SM00493 CQJ30_02460 CQJ30_02465 SM00347 helix_turn_helix multiple antibiotic resistance protein CQJ30_02500 SM01240 CQJ30_02500 CQJ30_02540 SM00257 Lysin motif CQJ30_02550 SM00450 Rhodanese Homology Domain CQJ30_02600 SM00448 cheY-homologous receiver domain CQJ30_02600 SM00862 Transcriptional regulatory protein, C terminal CQJ30_02605 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQJ30_02605 SM00387 Histidine kinase-like ATPases CQJ30_02605 SM00388 His Kinase A (phosphoacceptor) domain CQJ30_02615 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQJ30_02615 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQJ30_02625 SM00530 Helix-turn-helix XRE-family like proteins CQJ30_02630 SM00382 ATPases associated with a variety of cellular activities CQJ30_02690 SM00859 Semialdehyde dehydrogenase, NAD binding domain CQJ30_02710 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CQJ30_02715 SM00851 MGS-like domain CQJ30_02715 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CQJ30_02775 SM00487 DEAD-like helicases superfamily CQJ30_02790 SM01007 Class II Aldolase and Adducin N-terminal domain CQJ30_02810 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQJ30_02830 SM00382 ATPases associated with a variety of cellular activities CQJ30_02870 SM00342 helix_turn_helix, arabinose operon control protein CQJ30_02870 SM00448 cheY-homologous receiver domain CQJ30_02925 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CQJ30_02940 SM00861 Transketolase, pyrimidine binding domain CQJ30_02970 SM01038 Beta galactosidase small chain CQJ30_03030 SM00354 helix_turn _helix lactose operon repressor CQJ30_03035 SM00382 ATPases associated with a variety of cellular activities CQJ30_03085 SM01091 Transporter associated domain CQJ30_03090 SM00116 Domain in cystathionine beta-synthase and other proteins. CQJ30_03090 SM00924 MgtE intracellular N domain CQJ30_03115 SM00487 DEAD-like helicases superfamily CQJ30_03115 SM00490 helicase superfamily c-terminal domain CQJ30_03160 SM00316 Ribosomal protein S1-like RNA-binding domain CQJ30_03160 SM00732 Likely ribonuclease with RNase H fold. CQJ30_03170 SM00731 SprT homologues. CQJ30_03260 SM00382 ATPases associated with a variety of cellular activities CQJ30_03265 SM00881 CoA binding domain CQJ30_03285 SM00883 Chaperonin 10 Kd subunit CQJ30_03295 SM00382 ATPases associated with a variety of cellular activities CQJ30_03325 SM00382 ATPases associated with a variety of cellular activities CQJ30_03330 SM00382 ATPases associated with a variety of cellular activities CQJ30_03345 SM00857 Resolvase, N terminal domain CQJ30_03350 SM00530 Helix-turn-helix XRE-family like proteins CQJ30_03380 SM01061 CAT RNA binding domain CQJ30_03405 SM00530 Helix-turn-helix XRE-family like proteins CQJ30_03420 SM00460 Transglutaminase/protease-like homologues CQJ30_03435 SM00530 Helix-turn-helix XRE-family like proteins CQJ30_03450 SM01061 CAT RNA binding domain CQJ30_03470 SM00998 Adenylosuccinate lyase C-terminus CQJ30_03505 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CQJ30_03505 SM00292 breast cancer carboxy-terminal domain CQJ30_03505 SM00532 Ligase N family CQJ30_03515 SM01209 CQJ30_03515 CQJ30_03515 SM01210 CQJ30_03515 CQJ30_03520 SM00798 AICARFT/IMPCHase bienzyme CQJ30_03520 SM00851 MGS-like domain CQJ30_03545 SM01211 CQJ30_03545 CQJ30_03565 SM01001 AIR carboxylase CQJ30_03595 SM00845 GatB domain CQJ30_03610 SM01005 Alanine racemase, C-terminal domain CQJ30_03620 SM00046 Diacylglycerol kinase catalytic domain (presumed) CQJ30_03640 SM00387 Histidine kinase-like ATPases CQJ30_03645 SM00421 helix_turn_helix, Lux Regulon CQJ30_03645 SM00448 cheY-homologous receiver domain CQJ30_03655 SM00052 Putative diguanylate phosphodiesterase CQJ30_03670 SM00382 ATPases associated with a variety of cellular activities CQJ30_03715 SM00382 ATPases associated with a variety of cellular activities CQJ30_03785 SM00530 Helix-turn-helix XRE-family like proteins CQJ30_03855 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CQJ30_03865 SM00354 helix_turn _helix lactose operon repressor CQJ30_03890 SM01321 CQJ30_03890 CQJ30_03910 SM00354 helix_turn _helix lactose operon repressor CQJ30_03920 SM00640 Glycosyl hydrolases family 32 CQJ30_03930 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQJ30_03940 SM00347 helix_turn_helix multiple antibiotic resistance protein CQJ30_03950 SM00849 Metallo-beta-lactamase superfamily CQJ30_03995 SM00448 cheY-homologous receiver domain CQJ30_03995 SM00850 LytTr DNA-binding domain CQJ30_04000 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CQJ30_04045 SM00062 Bacterial periplasmic substrate-binding proteins CQJ30_04045 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CQJ30_04055 SM00382 ATPases associated with a variety of cellular activities CQJ30_04060 SM00479 CQJ30_04060 CQJ30_04160 SM00052 Putative diguanylate phosphodiesterase CQJ30_04160 SM00091 PAS domain CQJ30_04160 SM00267 diguanylate cyclase CQJ30_04175 SM00267 diguanylate cyclase CQJ30_04185 SM00387 Histidine kinase-like ATPases CQJ30_04185 SM00388 His Kinase A (phosphoacceptor) domain CQJ30_04195 SM00244 prohibitin homologues CQJ30_04205 SM00831 Cation transporter/ATPase, N-terminus CQJ30_04210 SM00899 CQJ30_04210 CQJ30_04225 SM00062 Bacterial periplasmic substrate-binding proteins CQJ30_04225 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CQJ30_04235 SM00382 ATPases associated with a variety of cellular activities CQJ30_04250 SM00382 ATPases associated with a variety of cellular activities CQJ30_04265 SM00387 Histidine kinase-like ATPases CQJ30_04270 SM00421 helix_turn_helix, Lux Regulon CQJ30_04270 SM00448 cheY-homologous receiver domain CQJ30_04325 SM00226 Low molecular weight phosphatase family CQJ30_04375 SM01120 CQJ30_04375 CQJ30_04440 SM00347 helix_turn_helix multiple antibiotic resistance protein CQJ30_04470 SM00448 cheY-homologous receiver domain CQJ30_04470 SM00862 Transcriptional regulatory protein, C terminal CQJ30_04475 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQJ30_04475 SM00387 Histidine kinase-like ATPases CQJ30_04475 SM00388 His Kinase A (phosphoacceptor) domain CQJ30_04505 SM00450 Rhodanese Homology Domain CQJ30_04515 SM00450 Rhodanese Homology Domain CQJ30_04515 SM00849 Metallo-beta-lactamase superfamily CQJ30_04535 SM00450 Rhodanese Homology Domain CQJ30_04540 SM00450 Rhodanese Homology Domain CQJ30_04570 SM00382 ATPases associated with a variety of cellular activities CQJ30_04635 SM00448 cheY-homologous receiver domain CQJ30_04635 SM00862 Transcriptional regulatory protein, C terminal CQJ30_04640 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQJ30_04640 SM00387 Histidine kinase-like ATPases CQJ30_04640 SM00388 His Kinase A (phosphoacceptor) domain CQJ30_04645 SM00636 CQJ30_04645 CQJ30_04670 SM00450 Rhodanese Homology Domain CQJ30_04670 SM00849 Metallo-beta-lactamase superfamily CQJ30_04700 SM00450 Rhodanese Homology Domain CQJ30_04705 SM00450 Rhodanese Homology Domain CQJ30_04710 SM00450 Rhodanese Homology Domain CQJ30_04715 SM00450 Rhodanese Homology Domain CQJ30_04715 SM00849 Metallo-beta-lactamase superfamily CQJ30_04835 SM01217 CQJ30_04835 CQJ30_04865 SM00530 Helix-turn-helix XRE-family like proteins CQJ30_04915 SM00421 helix_turn_helix, Lux Regulon CQJ30_04915 SM00448 cheY-homologous receiver domain CQJ30_04920 SM00382 ATPases associated with a variety of cellular activities CQJ30_04945 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQJ30_04950 SM00382 ATPases associated with a variety of cellular activities CQJ30_04980 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CQJ30_05025 SM00421 helix_turn_helix, Lux Regulon CQJ30_05040 SM00052 Putative diguanylate phosphodiesterase CQJ30_05145 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQJ30_05165 SM00487 DEAD-like helicases superfamily CQJ30_05165 SM00490 helicase superfamily c-terminal domain CQJ30_05205 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQJ30_05210 SM00116 Domain in cystathionine beta-synthase and other proteins. CQJ30_05210 SM00382 ATPases associated with a variety of cellular activities CQJ30_05230 SM00347 helix_turn_helix multiple antibiotic resistance protein CQJ30_05235 SM00382 ATPases associated with a variety of cellular activities CQJ30_05240 SM00422 helix_turn_helix, mercury resistance CQJ30_05255 SM00849 Metallo-beta-lactamase superfamily CQJ30_05270 SM00382 ATPases associated with a variety of cellular activities CQJ30_05275 SM00382 ATPases associated with a variety of cellular activities CQJ30_05320 SM00382 ATPases associated with a variety of cellular activities CQJ30_05325 SM00342 helix_turn_helix, arabinose operon control protein CQJ30_05395 SM00478 endonuclease III CQJ30_05395 SM00525 CQJ30_05395 CQJ30_05415 SM00382 ATPases associated with a variety of cellular activities CQJ30_05570 SM00382 ATPases associated with a variety of cellular activities CQJ30_05590 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CQJ30_05660 SM00347 helix_turn_helix multiple antibiotic resistance protein CQJ30_05705 SM00530 Helix-turn-helix XRE-family like proteins CQJ30_05730 SM00450 Rhodanese Homology Domain CQJ30_05735 SM00450 Rhodanese Homology Domain CQJ30_05745 SM00450 Rhodanese Homology Domain CQJ30_05760 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQJ30_05775 SM00448 cheY-homologous receiver domain CQJ30_05775 SM00862 Transcriptional regulatory protein, C terminal CQJ30_05780 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQJ30_05780 SM00387 Histidine kinase-like ATPases CQJ30_05780 SM00388 His Kinase A (phosphoacceptor) domain CQJ30_05810 SM00448 cheY-homologous receiver domain CQJ30_05810 SM00862 Transcriptional regulatory protein, C terminal CQJ30_05815 SM00387 Histidine kinase-like ATPases CQJ30_05815 SM00388 His Kinase A (phosphoacceptor) domain CQJ30_05870 SM00450 Rhodanese Homology Domain CQJ30_05885 SM00116 Domain in cystathionine beta-synthase and other proteins. CQJ30_05920 SM01060 CQJ30_05920 CQJ30_05935 SM00487 DEAD-like helicases superfamily CQJ30_05935 SM00490 helicase superfamily c-terminal domain CQJ30_05945 SM00382 ATPases associated with a variety of cellular activities CQJ30_05985 SM00382 ATPases associated with a variety of cellular activities CQJ30_06000 SM00382 ATPases associated with a variety of cellular activities CQJ30_06005 SM00382 ATPases associated with a variety of cellular activities CQJ30_06085 SM00422 helix_turn_helix, mercury resistance CQJ30_06090 SM00836 DALR anticodon binding domain CQJ30_06090 SM01016 Arginyl tRNA synthetase N terminal dom CQJ30_06100 SM00052 Putative diguanylate phosphodiesterase CQJ30_06115 SM00382 ATPases associated with a variety of cellular activities CQJ30_06140 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CQJ30_06140 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CQJ30_06140 SM00493 CQJ30_06140 CQJ30_06180 SM00631 CQJ30_06180 CQJ30_06215 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQJ30_06215 SM00895 CQJ30_06215 CQJ30_06245 SM00155 Phospholipase D. Active site motifs. CQJ30_06250 SM00091 PAS domain CQJ30_06250 SM00387 Histidine kinase-like ATPases CQJ30_06250 SM00388 His Kinase A (phosphoacceptor) domain CQJ30_06325 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CQJ30_06360 SM00347 helix_turn_helix multiple antibiotic resistance protein CQJ30_06375 SM00382 ATPases associated with a variety of cellular activities CQJ30_06415 SM00849 Metallo-beta-lactamase superfamily CQJ30_06525 SM00052 Putative diguanylate phosphodiesterase CQJ30_06525 SM00267 diguanylate cyclase CQJ30_06525 SM00897 FIST N domain CQJ30_06605 SM00825 Beta-ketoacyl synthase CQJ30_06665 SM01118 CQJ30_06665 CQJ30_06670 SM00954 Region found in RelA / SpoT proteins CQJ30_06805 SM00316 Ribosomal protein S1-like RNA-binding domain CQJ30_06810 SM01131 CQJ30_06810 CQJ30_06890 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CQJ30_06890 SM00478 endonuclease III CQJ30_06905 SM00830 Chorismate mutase type II CQJ30_06935 SM00420 helix_turn_helix, Deoxyribose operon repressor CQJ30_06935 SM01134 CQJ30_06935 CQJ30_06975 SM00903 Flavin reductase like domain CQJ30_07000 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase CQJ30_07025 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQJ30_07030 SM00382 ATPases associated with a variety of cellular activities CQJ30_07055 SM01240 CQJ30_07055 CQJ30_07060 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CQJ30_07060 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CQJ30_07120 SM00267 diguanylate cyclase CQJ30_07135 SM00382 ATPases associated with a variety of cellular activities CQJ30_07145 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CQJ30_07205 SM00487 DEAD-like helicases superfamily CQJ30_07215 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQJ30_07215 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQJ30_07225 SM00487 DEAD-like helicases superfamily CQJ30_07225 SM00490 helicase superfamily c-terminal domain CQJ30_07245 SM00382 ATPases associated with a variety of cellular activities CQJ30_07260 SM00829 Enoylreductase CQJ30_07270 SM00382 ATPases associated with a variety of cellular activities CQJ30_07270 SM00448 cheY-homologous receiver domain CQJ30_07275 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CQJ30_07275 SM00387 Histidine kinase-like ATPases CQJ30_07275 SM00388 His Kinase A (phosphoacceptor) domain CQJ30_07295 SM00257 Lysin motif CQJ30_07325 SM00829 Enoylreductase CQJ30_07380 SM00318 Staphylococcal nuclease homologues CQJ30_07425 SM00382 ATPases associated with a variety of cellular activities CQJ30_07425 SM01086 C-terminal, D2-small domain, of ClpB protein CQJ30_07450 SM00257 Lysin motif CQJ30_07475 SM00260 Two component signalling adaptor domain CQJ30_07525 SM00849 Metallo-beta-lactamase superfamily CQJ30_07550 SM00861 Transketolase, pyrimidine binding domain CQJ30_07595 SM00838 Elongation factor G C-terminus CQJ30_07630 SM00878 Biotin carboxylase C-terminal domain CQJ30_07730 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CQJ30_07750 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains CQJ30_07790 SM00740 CQJ30_07790 CQJ30_07795 SM00740 CQJ30_07795 CQJ30_07845 SM00842 Cell division protein FtsA CQJ30_07850 SM00864 Tubulin/FtsZ family, GTPase domain CQJ30_07850 SM00865 Tubulin/FtsZ family, C-terminal domain CQJ30_07890 SM00363 S4 RNA-binding domain CQJ30_07920 SM00363 S4 RNA-binding domain CQJ30_07940 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain CQJ30_07945 SM00851 MGS-like domain CQJ30_07945 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CQJ30_07960 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family CQJ30_07975 SM00831 Cation transporter/ATPase, N-terminus CQJ30_07985 SM00072 Guanylate kinase homologues. CQJ30_07990 SM01409 CQJ30_07990 CQJ30_08000 SM00487 DEAD-like helicases superfamily CQJ30_08000 SM00490 helicase superfamily c-terminal domain CQJ30_08015 SM00331 Sigma factor PP2C-like phosphatases CQJ30_08015 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain CQJ30_08020 SM00220 Serine/Threonine protein kinases, catalytic domain CQJ30_08020 SM00740 CQJ30_08020 CQJ30_08035 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain CQJ30_08055 SM01120 CQJ30_08055 CQJ30_08055 SM01121 CQJ30_08055 CQJ30_08070 SM00487 DEAD-like helicases superfamily CQJ30_08070 SM00490 helicase superfamily c-terminal domain CQJ30_08085 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. CQJ30_08090 SM00822 CQJ30_08090 CQJ30_08100 SM00358 Double-stranded RNA binding motif CQJ30_08100 SM00535 Ribonuclease III family CQJ30_08105 SM00968 SMC proteins Flexible Hinge Domain CQJ30_08110 SM00382 ATPases associated with a variety of cellular activities CQJ30_08110 SM00962 SRP54-type protein, GTPase domain CQJ30_08110 SM00963 SRP54-type protein, helical bundle domain CQJ30_08120 SM00382 ATPases associated with a variety of cellular activities CQJ30_08120 SM00962 SRP54-type protein, GTPase domain CQJ30_08120 SM00963 SRP54-type protein, helical bundle domain CQJ30_08185 SM00881 CoA binding domain CQJ30_08195 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain CQJ30_08195 SM00437 Bacterial DNA topoisomerase I DNA-binding domain CQJ30_08195 SM00493 CQJ30_08195 CQJ30_08210 SM00382 ATPases associated with a variety of cellular activities CQJ30_08210 SM01086 C-terminal, D2-small domain, of ClpB protein CQJ30_08250 SM00382 ATPases associated with a variety of cellular activities CQJ30_08305 SM00448 cheY-homologous receiver domain CQJ30_08340 SM00962 SRP54-type protein, GTPase domain CQJ30_08350 SM00448 cheY-homologous receiver domain CQJ30_08355 SM00073 Histidine Phosphotransfer domain CQJ30_08355 SM00260 Two component signalling adaptor domain CQJ30_08355 SM00387 Histidine kinase-like ATPases CQJ30_08355 SM01231 CQJ30_08355 CQJ30_08360 SM00260 Two component signalling adaptor domain CQJ30_08425 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CQJ30_08440 SM00479 CQJ30_08440 CQJ30_08440 SM00481 DNA polymerase alpha chain like domain CQJ30_08450 SM00316 Ribosomal protein S1-like RNA-binding domain CQJ30_08450 SM00322 K homology RNA-binding domain CQJ30_08485 SM00904 Riboflavin kinase CQJ30_08490 SM01387 CQJ30_08490 CQJ30_08495 SM00316 Ribosomal protein S1-like RNA-binding domain CQJ30_08495 SM00322 K homology RNA-binding domain CQJ30_08525 SM00859 Semialdehyde dehydrogenase, NAD binding domain CQJ30_08535 SM01130 CQJ30_08535 CQJ30_08540 SM00849 Metallo-beta-lactamase superfamily CQJ30_08555 SM00382 ATPases associated with a variety of cellular activities CQJ30_08555 SM00843 CQJ30_08555 CQJ30_08565 SM00382 ATPases associated with a variety of cellular activities CQJ30_08605 SM00530 Helix-turn-helix XRE-family like proteins CQJ30_08615 SM00852 Probable molybdopterin binding domain CQJ30_08645 SM00642 Alpha-amylase domain CQJ30_08650 SM00642 Alpha-amylase domain CQJ30_08695 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CQJ30_08715 SM01018 B12 binding domain CQJ30_08755 SM00382 ATPases associated with a variety of cellular activities CQJ30_08775 SM00487 DEAD-like helicases superfamily CQJ30_08800 SM00382 ATPases associated with a variety of cellular activities CQJ30_08805 SM00322 K homology RNA-binding domain CQJ30_08805 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CQJ30_08820 SM00729 Elongator protein 3, MiaB family, Radical SAM CQJ30_08845 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CQJ30_08845 SM00534 ATPase domain of DNA mismatch repair MUTS family CQJ30_08850 SM00853 MutL C terminal dimerisation domain CQJ30_08850 SM01340 CQJ30_08850 CQJ30_08865 SM00382 ATPases associated with a variety of cellular activities CQJ30_08880 SM00422 helix_turn_helix, mercury resistance CQJ30_08885 SM01230 CQJ30_08885 CQJ30_08900 SM00857 Resolvase, N terminal domain CQJ30_08920 SM00382 ATPases associated with a variety of cellular activities CQJ30_08925 SM00382 ATPases associated with a variety of cellular activities CQJ30_08935 SM00448 cheY-homologous receiver domain CQJ30_09025 SM00829 Enoylreductase CQJ30_09040 SM00829 Enoylreductase CQJ30_09075 SM00867 YceI-like domain CQJ30_09085 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CQJ30_09150 SM00382 ATPases associated with a variety of cellular activities CQJ30_09185 SM01207 CQJ30_09185 CQJ30_09195 SM00530 Helix-turn-helix XRE-family like proteins CQJ30_09205 SM00881 CoA binding domain CQJ30_09210 SM00387 Histidine kinase-like ATPases CQJ30_09210 SM00433 TopoisomeraseII CQJ30_09215 SM00434 DNA Topoisomerase IV CQJ30_09220 SM01058 CarD-like/TRCF domain CQJ30_09235 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CQJ30_09275 SM00855 Phosphoglycerate mutase family CQJ30_09285 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CQJ30_09375 SM00421 helix_turn_helix, Lux Regulon CQJ30_09395 SM00855 Phosphoglycerate mutase family CQJ30_09440 SM00382 ATPases associated with a variety of cellular activities CQJ30_09505 SM00382 ATPases associated with a variety of cellular activities CQJ30_09520 SM00155 Phospholipase D. Active site motifs. CQJ30_09595 SM00155 Phospholipase D. Active site motifs. CQJ30_09675 SM00382 ATPases associated with a variety of cellular activities CQJ30_09675 SM01086 C-terminal, D2-small domain, of ClpB protein CQJ30_09775 SM00829 Enoylreductase CQJ30_09875 SM00387 Histidine kinase-like ATPases CQJ30_09875 SM00388 His Kinase A (phosphoacceptor) domain CQJ30_09880 SM00448 cheY-homologous receiver domain CQJ30_09880 SM00862 Transcriptional regulatory protein, C terminal CQJ30_09890 SM00857 Resolvase, N terminal domain CQJ30_09910 SM00830 Chorismate mutase type II CQJ30_09985 SM00382 ATPases associated with a variety of cellular activities CQJ30_10045 SM00116 Domain in cystathionine beta-synthase and other proteins. CQJ30_10045 SM00382 ATPases associated with a variety of cellular activities CQJ30_10060 SM00966 SpoVT / AbrB like domain CQJ30_10080 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CQJ30_10160 SM01321 CQJ30_10160 CQJ30_10230 SM00382 ATPases associated with a variety of cellular activities CQJ30_10315 SM00014 Acid phosphatase homologues CQJ30_10320 SM00382 ATPases associated with a variety of cellular activities CQJ30_10325 SM00382 ATPases associated with a variety of cellular activities CQJ30_10330 SM00829 Enoylreductase CQJ30_10335 SM00563 Phosphate acyltransferases CQJ30_10515 SM00357 Cold shock protein domain CQJ30_10520 SM00357 Cold shock protein domain CQJ30_10530 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen CQJ30_10570 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CQJ30_10570 SM00245 tail specific protease CQJ30_10665 SM00567 E-Z type HEAT repeats CQJ30_10665 SM00932 Scaffold protein Nfu/NifU N terminal CQJ30_10670 SM00382 ATPases associated with a variety of cellular activities CQJ30_10690 SM00529 Helix-turn-helix diphteria tox regulatory element CQJ30_10695 SM00357 Cold shock protein domain CQJ30_10735 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CQJ30_10735 SM00475 5'-3' exonuclease CQJ30_10740 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQJ30_10740 SM00387 Histidine kinase-like ATPases CQJ30_10740 SM00388 His Kinase A (phosphoacceptor) domain CQJ30_10745 SM00448 cheY-homologous receiver domain CQJ30_10745 SM00862 Transcriptional regulatory protein, C terminal CQJ30_10770 SM00746 metallochaperone-like domain CQJ30_10805 SM00966 SpoVT / AbrB like domain CQJ30_10875 SM00507 HNH nucleases CQJ30_10885 SM00530 Helix-turn-helix XRE-family like proteins CQJ30_10900 SM00450 Rhodanese Homology Domain CQJ30_10920 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CQJ30_10945 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CQJ30_11005 SM00487 DEAD-like helicases superfamily CQJ30_11050 SM00382 ATPases associated with a variety of cellular activities CQJ30_11115 SM00052 Putative diguanylate phosphodiesterase CQJ30_11130 SM00981 CQJ30_11130 CQJ30_11160 SM00487 DEAD-like helicases superfamily CQJ30_11160 SM00490 helicase superfamily c-terminal domain CQJ30_11205 SM00478 endonuclease III CQJ30_11205 SM00525 CQJ30_11205 CQJ30_11235 SM00479 CQJ30_11235 CQJ30_11235 SM00491 CQJ30_11235 CQJ30_11270 SM00851 MGS-like domain CQJ30_11325 SM00914 CQJ30_11325 CQJ30_11330 SM00028 Tetratricopeptide repeats CQJ30_11340 SM00138 Methyltransferase, chemotaxis proteins CQJ30_11345 SM00562 CQJ30_11345 CQJ30_11375 SM00411 bacterial (prokaryotic) histone like domain CQJ30_11420 SM00316 Ribosomal protein S1-like RNA-binding domain CQJ30_11425 SM00563 Phosphate acyltransferases CQJ30_11465 SM00870 CQJ30_11465 CQJ30_11525 SM00387 Histidine kinase-like ATPases CQJ30_11525 SM00388 His Kinase A (phosphoacceptor) domain CQJ30_11530 SM00448 cheY-homologous receiver domain CQJ30_11530 SM00862 Transcriptional regulatory protein, C terminal CQJ30_11545 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CQJ30_11570 SM00487 DEAD-like helicases superfamily CQJ30_11570 SM00490 helicase superfamily c-terminal domain CQJ30_11590 SM00257 Lysin motif CQJ30_11595 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQJ30_11595 SM00387 Histidine kinase-like ATPases CQJ30_11595 SM00388 His Kinase A (phosphoacceptor) domain CQJ30_11600 SM00448 cheY-homologous receiver domain CQJ30_11600 SM00862 Transcriptional regulatory protein, C terminal CQJ30_11620 SM00363 S4 RNA-binding domain CQJ30_11680 SM00387 Histidine kinase-like ATPases CQJ30_11690 SM00936 Penicillin-binding protein 5, C-terminal domain CQJ30_11695 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain CQJ30_11825 SM00481 DNA polymerase alpha chain like domain CQJ30_11845 SM01350 CQJ30_11845 CQJ30_11855 SM00260 Two component signalling adaptor domain CQJ30_11905 SM00861 Transketolase, pyrimidine binding domain CQJ30_11920 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CQJ30_11930 SM00091 PAS domain CQJ30_11930 SM00382 ATPases associated with a variety of cellular activities CQJ30_11945 SM00448 cheY-homologous receiver domain CQJ30_11950 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CQJ30_11965 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQJ30_11965 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQJ30_11990 SM00419 helix_turn_helix, cAMP Regulatory protein CQJ30_11995 SM00363 S4 RNA-binding domain CQJ30_12000 SM00861 Transketolase, pyrimidine binding domain CQJ30_12035 SM00878 Biotin carboxylase C-terminal domain CQJ30_12080 SM00382 ATPases associated with a variety of cellular activities CQJ30_12085 SM00841 Elongation factor P, C-terminal CQJ30_12085 SM01185 CQJ30_12085 CQJ30_12115 SM00450 Rhodanese Homology Domain CQJ30_12135 SM00487 DEAD-like helicases superfamily CQJ30_12135 SM00490 helicase superfamily c-terminal domain CQJ30_12155 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CQJ30_12160 SM00382 ATPases associated with a variety of cellular activities CQJ30_12205 SM00257 Lysin motif CQJ30_12205 SM00631 CQJ30_12205 CQJ30_12325 SM00382 ATPases associated with a variety of cellular activities CQJ30_12335 SM00518 AP endonuclease family 2 CQJ30_12340 SM00487 DEAD-like helicases superfamily CQJ30_12340 SM00490 helicase superfamily c-terminal domain CQJ30_12375 SM00400 zinc finger CQJ30_12375 SM00493 CQJ30_12375 CQJ30_12385 SM00116 Domain in cystathionine beta-synthase and other proteins. CQJ30_12430 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CQJ30_12480 SM01133 CQJ30_12480 CQJ30_12485 SM00729 Elongator protein 3, MiaB family, Radical SAM CQJ30_12500 SM00271 DnaJ molecular chaperone homology domain CQJ30_12520 SM00729 Elongator protein 3, MiaB family, Radical SAM CQJ30_12525 SM00838 Elongation factor G C-terminus CQJ30_12555 SM00849 Metallo-beta-lactamase superfamily CQJ30_12570 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CQJ30_12590 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CQJ30_12600 SM01103 CQJ30_12600 CQJ30_12650 SM00448 cheY-homologous receiver domain CQJ30_12650 SM00862 Transcriptional regulatory protein, C terminal CQJ30_12710 SM00732 Likely ribonuclease with RNase H fold. CQJ30_12720 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CQJ30_12735 SM00382 ATPases associated with a variety of cellular activities CQJ30_12760 SM00382 ATPases associated with a variety of cellular activities CQJ30_12795 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CQJ30_12795 SM00954 Region found in RelA / SpoT proteins CQJ30_12835 SM01323 CQJ30_12835 CQJ30_12855 SM00382 ATPases associated with a variety of cellular activities CQJ30_12860 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CQJ30_12930 SM00257 Lysin motif CQJ30_12945 SM01317 CQJ30_12945 CQJ30_12965 SM00316 Ribosomal protein S1-like RNA-binding domain CQJ30_13025 SM00382 ATPases associated with a variety of cellular activities CQJ30_13030 SM00062 Bacterial periplasmic substrate-binding proteins CQJ30_13030 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CQJ30_13065 SM00382 ATPases associated with a variety of cellular activities CQJ30_13070 SM00382 ATPases associated with a variety of cellular activities CQJ30_13075 SM01208 CQJ30_13075 CQJ30_13110 SM01321 CQJ30_13110 CQJ30_13120 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CQJ30_13120 SM00267 diguanylate cyclase CQJ30_13155 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQJ30_13170 SM00257 Lysin motif CQJ30_13180 SM01004 Delta-aminolevulinic acid dehydratase CQJ30_13215 SM00382 ATPases associated with a variety of cellular activities CQJ30_13215 SM00464 Found in ATP-dependent protease La (LON) CQJ30_13220 SM00382 ATPases associated with a variety of cellular activities CQJ30_13225 SM00382 ATPases associated with a variety of cellular activities CQJ30_13225 SM00994 ClpX C4-type zinc finger CQJ30_13225 SM01086 C-terminal, D2-small domain, of ClpB protein CQJ30_13260 SM00909 Sporulation and spore germination CQJ30_13270 SM00347 helix_turn_helix multiple antibiotic resistance protein CQJ30_13280 SM00421 helix_turn_helix, Lux Regulon CQJ30_13310 SM00465 GIY-YIG type nucleases (URI domain) CQJ30_13320 SM00893 Electron transfer flavoprotein domain CQJ30_13325 SM00893 Electron transfer flavoprotein domain CQJ30_13350 SM00463 Small MutS-related domain CQJ30_13350 SM00533 DNA-binding domain of DNA mismatch repair MUTS family CQJ30_13350 SM00534 ATPase domain of DNA mismatch repair MUTS family CQJ30_13355 SM00278 Helix-hairpin-helix DNA-binding motif class 1 CQJ30_13355 SM00481 DNA polymerase alpha chain like domain CQJ30_13355 SM00483 DNA polymerase X family CQJ30_13370 SM00873 B3/4 domain CQJ30_13370 SM00874 tRNA synthetase B5 domain CQJ30_13370 SM00896 Ferredoxin-fold anticodon binding domain CQJ30_13380 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQJ30_13385 SM00967 RNA 2'-O ribose methyltransferase substrate binding CQJ30_13395 SM00849 Metallo-beta-lactamase superfamily CQJ30_13440 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain CQJ30_13450 SM00382 ATPases associated with a variety of cellular activities CQJ30_13475 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CQJ30_13490 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain CQJ30_13490 SM01232 CQJ30_13490 CQJ30_13495 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs CQJ30_13495 SM00474 3'-5' exonuclease CQJ30_13495 SM00475 5'-3' exonuclease CQJ30_13495 SM00482 DNA polymerase A domain CQJ30_13500 SM00244 prohibitin homologues CQJ30_13505 SM00244 prohibitin homologues CQJ30_13510 SM00091 PAS domain CQJ30_13510 SM00387 Histidine kinase-like ATPases CQJ30_13510 SM00388 His Kinase A (phosphoacceptor) domain CQJ30_13515 SM00448 cheY-homologous receiver domain CQJ30_13515 SM00862 Transcriptional regulatory protein, C terminal CQJ30_13525 SM01329 CQJ30_13525 CQJ30_13565 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQJ30_13570 SM00919 Malic enzyme, NAD binding domain CQJ30_13570 SM01274 CQJ30_13570 CQJ30_13575 SM00481 DNA polymerase alpha chain like domain CQJ30_13600 SM00116 Domain in cystathionine beta-synthase and other proteins. CQJ30_13615 SM00849 Metallo-beta-lactamase superfamily CQJ30_13680 SM00419 helix_turn_helix, cAMP Regulatory protein CQJ30_13725 SM00981 CQJ30_13725 CQJ30_13750 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. CQJ30_13750 SM00267 diguanylate cyclase CQJ30_13760 SM00363 S4 RNA-binding domain CQJ30_13760 SM01390 CQJ30_13760 CQJ30_13785 SM00530 Helix-turn-helix XRE-family like proteins CQJ30_13830 SM00257 Lysin motif CQJ30_13830 SM00636 CQJ30_13830 CQJ30_13845 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CQJ30_13870 SM01007 Class II Aldolase and Adducin N-terminal domain CQJ30_13885 SM00342 helix_turn_helix, arabinose operon control protein CQJ30_13890 SM00382 ATPases associated with a variety of cellular activities CQJ30_13895 SM00382 ATPases associated with a variety of cellular activities CQJ30_13915 SM00363 S4 RNA-binding domain CQJ30_13945 SM00116 Domain in cystathionine beta-synthase and other proteins. CQJ30_13965 SM00354 helix_turn _helix lactose operon repressor CQJ30_13970 SM00842 Cell division protein FtsA CQJ30_14000 SM00822 CQJ30_14000 CQJ30_14020 SM00091 PAS domain CQJ30_14020 SM00382 ATPases associated with a variety of cellular activities CQJ30_14045 SM00382 ATPases associated with a variety of cellular activities CQJ30_14045 SM00843 CQJ30_14045 CQJ30_14090 SM00849 Metallo-beta-lactamase superfamily CQJ30_14130 SM00420 helix_turn_helix, Deoxyribose operon repressor CQJ30_14135 SM00363 S4 RNA-binding domain CQJ30_14160 SM00450 Rhodanese Homology Domain CQJ30_14175 SM00729 Elongator protein 3, MiaB family, Radical SAM CQJ30_14175 SM00876 Biotin and Thiamin Synthesis associated domain CQJ30_14200 SM00729 Elongator protein 3, MiaB family, Radical SAM CQJ30_14260 SM00382 ATPases associated with a variety of cellular activities CQJ30_14295 SM01234 CQJ30_14295 CQJ30_14320 SM01329 CQJ30_14320 CQJ30_14350 SM00882 Coenzyme A transferase CQJ30_14355 SM00882 Coenzyme A transferase CQJ30_14525 SM00646 CQJ30_14525 CQJ30_14545 SM01329 CQJ30_14545 CQJ30_14550 SM00917 LeuA allosteric (dimerisation) domain CQJ30_14595 SM00831 Cation transporter/ATPase, N-terminus CQJ30_14635 SM00342 helix_turn_helix, arabinose operon control protein CQJ30_14645 SM00530 Helix-turn-helix XRE-family like proteins CQJ30_14680 SM00382 ATPases associated with a variety of cellular activities CQJ30_14750 SM00316 Ribosomal protein S1-like RNA-binding domain CQJ30_14755 SM00530 Helix-turn-helix XRE-family like proteins CQJ30_14790 SM01298 CQJ30_14790 CQJ30_14815 SM00860 SMI1 / KNR4 family CQJ30_14820 SM00382 ATPases associated with a variety of cellular activities CQJ30_14900 SM00763 PrkA AAA domain CQJ30_14920 SM00567 E-Z type HEAT repeats CQJ30_15010 SM00382 ATPases associated with a variety of cellular activities CQJ30_15015 SM00382 ATPases associated with a variety of cellular activities CQJ30_15070 SM00382 ATPases associated with a variety of cellular activities CQJ30_15085 SM00382 ATPases associated with a variety of cellular activities CQJ30_15085 SM00930 CQJ30_15085 CQJ30_15100 SM00493 CQJ30_15100 CQJ30_15160 SM00382 ATPases associated with a variety of cellular activities CQJ30_15180 SM00382 ATPases associated with a variety of cellular activities CQJ30_15190 SM00062 Bacterial periplasmic substrate-binding proteins CQJ30_15190 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. CQJ30_15250 SM00382 ATPases associated with a variety of cellular activities CQJ30_15275 SM00028 Tetratricopeptide repeats CQJ30_15275 SM00530 Helix-turn-helix XRE-family like proteins CQJ30_15355 SM00327 von Willebrand factor (vWF) type A domain CQJ30_15420 SM00487 DEAD-like helicases superfamily CQJ30_15420 SM00490 helicase superfamily c-terminal domain CQJ30_15450 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQJ30_15455 SM00382 ATPases associated with a variety of cellular activities CQJ30_15475 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQJ30_15485 SM00530 Helix-turn-helix XRE-family like proteins CQJ30_15500 SM00382 ATPases associated with a variety of cellular activities CQJ30_15505 SM00387 Histidine kinase-like ATPases CQJ30_15505 SM00388 His Kinase A (phosphoacceptor) domain CQJ30_15510 SM00448 cheY-homologous receiver domain CQJ30_15510 SM00862 Transcriptional regulatory protein, C terminal CQJ30_15545 SM00448 cheY-homologous receiver domain CQJ30_15545 SM00862 Transcriptional regulatory protein, C terminal CQJ30_15550 SM00387 Histidine kinase-like ATPases CQJ30_15555 SM00382 ATPases associated with a variety of cellular activities CQJ30_15565 SM01049 CQJ30_15565 CQJ30_15570 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQJ30_15665 SM00487 DEAD-like helicases superfamily CQJ30_15665 SM00490 helicase superfamily c-terminal domain CQJ30_15755 SM00316 Ribosomal protein S1-like RNA-binding domain CQJ30_15755 SM00357 Cold shock protein domain CQJ30_15755 SM00955 CQJ30_15755 CQJ30_15825 SM01192 CQJ30_15825 CQJ30_15825 SM01193 CQJ30_15825 CQJ30_15845 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CQJ30_15910 SM00028 Tetratricopeptide repeats CQJ30_15955 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CQJ30_15965 SM00028 Tetratricopeptide repeats CQJ30_16025 SM00382 ATPases associated with a variety of cellular activities CQJ30_16045 SM00382 ATPases associated with a variety of cellular activities CQJ30_16050 SM00487 DEAD-like helicases superfamily CQJ30_16050 SM00490 helicase superfamily c-terminal domain CQJ30_16070 SM00347 helix_turn_helix multiple antibiotic resistance protein CQJ30_16120 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor CQJ30_16125 SM00226 Low molecular weight phosphatase family CQJ30_16130 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CQJ30_16135 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CQJ30_16135 SM00245 tail specific protease CQJ30_16160 SM00382 ATPases associated with a variety of cellular activities CQJ30_16180 SM00957 SecA DEAD-like domain CQJ30_16180 SM00958 SecA preprotein cross-linking domain CQJ30_16220 SM00861 Transketolase, pyrimidine binding domain CQJ30_16255 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQJ30_16255 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQJ30_16295 SM00028 Tetratricopeptide repeats CQJ30_16355 SM00857 Resolvase, N terminal domain CQJ30_16360 SM00487 DEAD-like helicases superfamily CQJ30_16360 SM00490 helicase superfamily c-terminal domain CQJ30_16400 SM00421 helix_turn_helix, Lux Regulon CQJ30_16400 SM00448 cheY-homologous receiver domain CQJ30_16405 SM00387 Histidine kinase-like ATPases CQJ30_16435 SM00382 ATPases associated with a variety of cellular activities CQJ30_16445 SM00861 Transketolase, pyrimidine binding domain CQJ30_16455 SM00986 Uracil DNA glycosylase superfamily CQJ30_16455 SM00987 UreE urease accessory protein, C-terminal domain CQJ30_16465 SM00849 Metallo-beta-lactamase superfamily CQJ30_16510 SM00344 helix_turn_helix ASNC type CQJ30_16570 SM00382 ATPases associated with a variety of cellular activities CQJ30_16570 SM00930 CQJ30_16570 CQJ30_16595 SM00729 Elongator protein 3, MiaB family, Radical SAM CQJ30_16640 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQJ30_16640 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQJ30_16650 SM00354 helix_turn _helix lactose operon repressor CQJ30_16700 SM00857 Resolvase, N terminal domain CQJ30_16750 SM00857 Resolvase, N terminal domain CQJ30_16810 SM00829 Enoylreductase CQJ30_16880 SM00354 helix_turn _helix lactose operon repressor CQJ30_16950 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQJ30_16990 SM00382 ATPases associated with a variety of cellular activities CQJ30_17040 SM00091 PAS domain CQJ30_17040 SM00382 ATPases associated with a variety of cellular activities CQJ30_17110 SM00342 helix_turn_helix, arabinose operon control protein CQJ30_17110 SM00871 Bacterial transcription activator, effector binding domain CQJ30_17125 SM01321 CQJ30_17125 CQJ30_17170 SM00257 Lysin motif CQJ30_17255 SM00797 Allophanate hydrolase subunit 2 CQJ30_17260 SM00796 Allophanate hydrolase subunit 1 CQJ30_17290 SM00857 Resolvase, N terminal domain CQJ30_17300 SM00872 Alpha mannosidase, middle domain CQJ30_17320 SM00530 Helix-turn-helix XRE-family like proteins CQJ30_17330 SM01002 Alanine dehydrogenase/PNT, C-terminal domain CQJ30_17330 SM01003 Alanine dehydrogenase/PNT, N-terminal domain CQJ30_17440 SM00829 Enoylreductase CQJ30_17470 SM00530 Helix-turn-helix XRE-family like proteins CQJ30_17485 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain CQJ30_17535 SM00530 Helix-turn-helix XRE-family like proteins CQJ30_17545 SM00984 UDP binding domain CQJ30_17575 SM00420 helix_turn_helix, Deoxyribose operon repressor CQJ30_17575 SM01134 CQJ30_17575 CQJ30_17775 SM00646 CQJ30_17775 CQJ30_17775 SM00728 Clostridial hydrophobic, with a conserved W residue, domain. CQJ30_17780 SM00047 Lysozyme subfamily 2 CQJ30_17780 SM00287 Bacterial SH3 domain homologues CQJ30_17780 SM00728 Clostridial hydrophobic, with a conserved W residue, domain. CQJ30_17875 SM00487 DEAD-like helicases superfamily CQJ30_17875 SM00490 helicase superfamily c-terminal domain CQJ30_17995 SM00382 ATPases associated with a variety of cellular activities CQJ30_18065 SM00344 helix_turn_helix ASNC type CQJ30_18085 SM00382 ATPases associated with a variety of cellular activities CQJ30_18090 SM00382 ATPases associated with a variety of cellular activities CQJ30_18105 SM00382 ATPases associated with a variety of cellular activities CQJ30_18125 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). CQJ30_18125 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQJ30_18130 SM00226 Low molecular weight phosphatase family CQJ30_18155 SM00937 CQJ30_18155 CQJ30_18170 SM00357 Cold shock protein domain CQJ30_18170 SM00382 ATPases associated with a variety of cellular activities CQJ30_18170 SM00959 Rho termination factor, N-terminal domain CQJ30_18190 SM00448 cheY-homologous receiver domain CQJ30_18210 SM00382 ATPases associated with a variety of cellular activities CQJ30_18215 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQJ30_18215 SM00387 Histidine kinase-like ATPases CQJ30_18215 SM00388 His Kinase A (phosphoacceptor) domain CQJ30_18220 SM00448 cheY-homologous receiver domain CQJ30_18220 SM00862 Transcriptional regulatory protein, C terminal CQJ30_18225 SM01260 CQJ30_18225 CQJ30_18230 SM00382 ATPases associated with a variety of cellular activities CQJ30_18295 SM00155 Phospholipase D. Active site motifs. CQJ30_18305 SM00836 DALR anticodon binding domain CQJ30_18305 SM01016 Arginyl tRNA synthetase N terminal dom CQJ30_18340 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. CQJ30_18420 SM01321 CQJ30_18420 CQJ30_18450 SM00342 helix_turn_helix, arabinose operon control protein CQJ30_18480 SM00422 helix_turn_helix, mercury resistance CQJ30_18485 SM00642 Alpha-amylase domain CQJ30_18490 SM00354 helix_turn _helix lactose operon repressor CQJ30_18535 SM00345 helix_turn_helix gluconate operon transcriptional repressor CQJ30_18540 SM00850 LytTr DNA-binding domain CQJ30_18580 SM00860 SMI1 / KNR4 family CQJ30_18590 SM01091 Transporter associated domain CQJ30_18635 SM00878 Biotin carboxylase C-terminal domain CQJ30_18725 SM00382 ATPases associated with a variety of cellular activities CQJ30_18745 SM00857 Resolvase, N terminal domain CQJ30_18750 SM00382 ATPases associated with a variety of cellular activities CQJ30_18755 SM00382 ATPases associated with a variety of cellular activities CQJ30_18780 SM01060 CQJ30_18780 CQJ30_18815 SM00450 Rhodanese Homology Domain CQJ30_18870 SM00448 cheY-homologous receiver domain CQJ30_18870 SM00862 Transcriptional regulatory protein, C terminal CQJ30_18875 SM00387 Histidine kinase-like ATPases CQJ30_18875 SM00388 His Kinase A (phosphoacceptor) domain CQJ30_18890 SM00382 ATPases associated with a variety of cellular activities CQJ30_18900 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. CQJ30_18905 SM00849 Metallo-beta-lactamase superfamily CQJ30_18920 SM00091 PAS domain CQJ30_18920 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain CQJ30_18920 SM00387 Histidine kinase-like ATPases CQJ30_18920 SM00388 His Kinase A (phosphoacceptor) domain CQJ30_18925 SM00448 cheY-homologous receiver domain CQJ30_18925 SM00862 Transcriptional regulatory protein, C terminal CQJ30_18930 SM00257 Lysin motif CQJ30_18930 SM01208 CQJ30_18930 CQJ30_18935 SM00788 Adenylosuccinate synthetase CQJ30_18940 SM00382 ATPases associated with a variety of cellular activities CQJ30_18950 SM00091 PAS domain CQJ30_18950 SM00267 diguanylate cyclase CQJ30_18985 SM00861 Transketolase, pyrimidine binding domain CQJ30_19000 SM00382 ATPases associated with a variety of cellular activities CQJ30_19025 SM00470 ParB-like nuclease domain CQJ30_19040 SM01321 CQJ30_19040 CQJ30_19045 SM00470 ParB-like nuclease domain CQJ30_19055 SM01228 CQJ30_19055 CQJ30_19065 SM00393 Putative single-stranded nucleic acids-binding domain CQJ30_19065 SM01245 CQJ30_19065