locus-tag	class	description
JRY14_00030	COG3344	reverse transcriptase
JRY14_00050	COG3344	reverse transcriptase
JRY14_00200	COG0457	Tetratricopeptide repeat
JRY14_00210	COG1028	Short-chain dehydrogenase reductase Sdr
JRY14_00210	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JRY14_00210	COG0318	PFAM AMP-dependent synthetase and ligase
JRY14_00210	COG0300	oxidoreductase activity
JRY14_00210	COG3321	synthase
JRY14_00210	COG1028	Short-chain dehydrogenase reductase Sdr
JRY14_00210	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JRY14_00210	COG0318	PFAM AMP-dependent synthetase and ligase
JRY14_00210	COG0300	oxidoreductase activity
JRY14_00210	COG3321	synthase
JRY14_00230	COG1960	acyl-CoA dehydrogenase activity
JRY14_00245	COG1250	3-hydroxyacyl-CoA dehydrogenase
JRY14_00250	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JRY14_00255	COG1960	acyl-CoA dehydrogenase activity
JRY14_00265	COG3321	synthase
JRY14_00265	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JRY14_00265	COG1028	Short-chain dehydrogenase reductase Sdr
JRY14_00265	COG0300	oxidoreductase activity
JRY14_00265	COG0318	PFAM AMP-dependent synthetase and ligase
JRY14_00270	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JRY14_00305	COG1609	Transcriptional regulator
JRY14_00320	COG0561	phosphatase activity
JRY14_00345	COG1475	DNA binding
JRY14_00365	COG1132	(ABC) transporter
JRY14_00370	COG1131	(ABC) transporter
JRY14_00405	COG5632	N-Acetylmuramoyl-L-alanine amidase
JRY14_00405	COG3409	Peptidoglycan-binding domain 1 protein
JRY14_00445	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
JRY14_00465	COG1131	(ABC) transporter
JRY14_00475	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
JRY14_00480	COG1132	(ABC) transporter
JRY14_00530	COG2801	Transposase and inactivated derivatives
JRY14_00545	COG0457	Tetratricopeptide repeat
JRY14_00555	COG3397	chitin binding
JRY14_00600	COG0697	spore germination
JRY14_00610	COG3397	chitin binding
JRY14_00615	COG0823	Involved in the tonB-independent uptake of proteins
JRY14_00625	COG1183	phosphatidylcholine synthase activity
JRY14_00650	COG5002	protein histidine kinase activity
JRY14_00650	COG3850	Histidine kinase
JRY14_00655	COG0745	RESPONSE REGULATOR receiver
JRY14_00665	COG1136	(ABC) transporter
JRY14_00670	COG0577	efflux transmembrane transporter activity
JRY14_00690	COG2814	Major facilitator Superfamily
JRY14_00715	COG0318	PFAM AMP-dependent synthetase and ligase
JRY14_00720	COG2259	Doxx family
JRY14_00740	COG3104	oligopeptide transport
JRY14_00760	COG1073	alpha beta
JRY14_00770	COG3547	Transposase (IS116 IS110 IS902 family)
JRY14_00815	COG1131	(ABC) transporter
JRY14_00850	COG4974	Belongs to the 'phage' integrase family
JRY14_00900	COG1309	transcriptional regulator
JRY14_00910	COG1136	(ABC) transporter
JRY14_00955	COG0457	Tetratricopeptide repeat
JRY14_01010	COG1802	Transcriptional regulator
JRY14_01015	COG0697	spore germination
JRY14_01035	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
JRY14_01050	COG0456	acetyltransferase
JRY14_01060	COG2184	nucleotidyltransferase activity
JRY14_01070	COG1522	sequence-specific DNA binding
JRY14_01075	COG0531	amino acid
JRY14_01095	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
JRY14_01115	COG0824	Thioesterase
JRY14_01120	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JRY14_01150	COG0546	phosphoglycolate phosphatase activity
JRY14_01155	COG1349	DNA-binding transcription factor activity
JRY14_01325	COG0592	DNA-directed DNA polymerase activity
JRY14_01330	COG2501	S4 domain
JRY14_01340	COG0187	DNA topoisomerase II activity
JRY14_01345	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
JRY14_01460	COG0517	IMP dehydrogenase activity
JRY14_01460	COG0516	GMP reductase activity
JRY14_01465	COG1686	Belongs to the peptidase S11 family
JRY14_01495	COG1428	Deoxynucleoside kinase
JRY14_01500	COG1428	Deoxynucleoside kinase
JRY14_01505	COG1335	isochorismatase
JRY14_01510	COG0590	tRNA wobble adenosine to inosine editing
JRY14_01520	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
JRY14_01575	COG1982	Orn Lys Arg decarboxylase major
JRY14_01585	COG0470	DNA polymerase III
JRY14_01590	COG1774	PSP1 C-terminal conserved region
JRY14_01600	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
JRY14_01620	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
JRY14_01625	COG2002	toxin-antitoxin pair type II binding
JRY14_01635	COG0084	hydrolase, TatD family'
JRY14_01655	COG4466	Protein conserved in bacteria
JRY14_01670	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
JRY14_01675	COG0251	oxidation-reduction process
JRY14_01705	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
JRY14_01710	COG2002	toxin-antitoxin pair type II binding
JRY14_01715	COG2244	polysaccharide biosynthetic process
JRY14_01720	COG3956	TIGRFAM MazG family protein
JRY14_01725	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
JRY14_01745	COG1098	S1 RNA binding domain
JRY14_01760	COG2208	phosphoserine phosphatase activity
JRY14_01770	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
JRY14_01775	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
JRY14_01790	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JRY14_01795	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
JRY14_01800	COG0512	Glutamine amidotransferase of anthranilate synthase
JRY14_01805	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JRY14_01810	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
JRY14_01815	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
JRY14_01820	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
JRY14_01825	COG1396	sequence-specific DNA binding
JRY14_01830	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JRY14_01920	COG3880	PFAM UvrB UvrC protein
JRY14_01930	COG0542	response to heat
JRY14_01935	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
JRY14_01945	COG4956	integral membrane protein (PIN domain superfamily)
JRY14_01965	COG1045	serine acetyltransferase
JRY14_01980	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JRY14_01985	COG3688	RNA-binding protein containing a PIN domain
JRY14_02000	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
JRY14_02005	COG0250	Participates in transcription elongation, termination and antitermination
JRY14_02010	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
JRY14_02030	COG2813	Specifically methylates the guanine in position
JRY14_02045	COG1358	cellular component organization or biogenesis
JRY14_02050	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
JRY14_02115	COG0255	Belongs to the universal ribosomal protein uL29 family
JRY14_02175	COG0201	protein transport
JRY14_02185	COG0024	Methionine aminopeptidase
JRY14_02195	COG0257	Belongs to the bacterial ribosomal protein bL36 family
JRY14_02230	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
JRY14_02255	COG0860	N-Acetylmuramoyl-L-alanine amidase
JRY14_02260	COG0489	protein tyrosine kinase activity
JRY14_02270	COG2194	sulfuric ester hydrolase activity
JRY14_02275	COG0726	polysaccharide deacetylase
JRY14_02345	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
JRY14_02350	COG4856	YbbR-like protein
JRY14_02390	COG1028	Short-chain dehydrogenase reductase Sdr
JRY14_02395	COG2011	ABC-type metal ion transport system permease component
JRY14_02400	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
JRY14_02405	COG1464	Belongs to the NlpA lipoprotein family
JRY14_02410	COG0604	alcohol dehydrogenase
JRY14_02420	COG0277	FAD linked oxidase domain protein
JRY14_02425	COG2271	Major facilitator Superfamily
JRY14_02435	COG2814	Major facilitator Superfamily
JRY14_02450	COG0601	transmembrane transport
JRY14_02460	COG0444	Belongs to the ABC transporter superfamily
JRY14_02465	COG4608	Belongs to the ABC transporter superfamily
JRY14_02475	COG4166	transmembrane transport
JRY14_02485	COG2207	Transcriptional regulator
JRY14_02500	COG4166	transmembrane transport
JRY14_02505	COG4166	transmembrane transport
JRY14_02510	COG0656	L-ascorbic acid biosynthetic process
JRY14_02525	COG4149	molybdate abc transporter
JRY14_02530	COG0725	ABC transporter, periplasmic molybdate-binding protein
JRY14_02540	COG1910	domain protein
JRY14_02555	COG0697	spore germination
JRY14_02570	COG0204	Acyl-transferase
JRY14_02580	COG1609	Transcriptional regulator
JRY14_02590	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JRY14_02605	COG5298	Protein conserved in bacteria
JRY14_02630	COG0488	(ABC) transporter
JRY14_02640	COG0747	negative chemotaxis
JRY14_02670	COG0444	Belongs to the ABC transporter superfamily
JRY14_02675	COG4608	Belongs to the ABC transporter superfamily
JRY14_02680	COG0561	phosphatase activity
JRY14_02710	COG3185	4-Hydroxyphenylpyruvate dioxygenase
JRY14_02715	COG0179	Fumarylacetoacetate (FAA) hydrolase
JRY14_02725	COG0531	amino acid
JRY14_02730	COG2814	Major facilitator Superfamily
JRY14_02740	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
JRY14_02750	COG4294	response to UV
JRY14_02755	COG0705	Rhomboid family
JRY14_02765	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
JRY14_02770	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
JRY14_02775	COG0864	Transcriptional regulator
JRY14_02780	COG2337	Toxic component of a toxin-antitoxin (TA) module
JRY14_02785	COG2183	response to ionizing radiation
JRY14_02895	COG0802	atpase or kinase
JRY14_02900	COG1214	PFAM Peptidase M22, glycoprotease
JRY14_02905	COG0456	acetyltransferase
JRY14_02915	COG0488	(ABC) transporter
JRY14_02930	COG1266	CAAX protease self-immunity
JRY14_02950	COG2252	PERMEase
JRY14_02960	COG5002	protein histidine kinase activity
JRY14_02985	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
JRY14_03025	COG2205	protein histidine kinase activity
JRY14_03030	COG0745	RESPONSE REGULATOR receiver
JRY14_03060	COG2226	methyltransferase
JRY14_03110	COG1215	transferase activity, transferring glycosyl groups
JRY14_03130	COG0697	spore germination
JRY14_03155	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
JRY14_03160	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
JRY14_03165	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
JRY14_03175	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
JRY14_03190	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
JRY14_03200	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
JRY14_03210	COG0151	Belongs to the GarS family
JRY14_03235	COG0210	DNA helicase
JRY14_03245	COG4851	CamS sex pheromone cAM373 precursor
JRY14_03260	COG1335	isochorismatase
JRY14_03270	COG2011	ABC-type metal ion transport system permease component
JRY14_03275	COG1464	Belongs to the NlpA lipoprotein family
JRY14_03290	COG0003	Pfam Anion-transporting ATPase
JRY14_03295	COG1846	Transcriptional regulator
JRY14_03300	COG4682	membrane
JRY14_03320	COG1597	lipid kinase activity
JRY14_03330	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
JRY14_03340	COG1012	belongs to the aldehyde dehydrogenase family
JRY14_03345	COG2076	Multidrug Resistance protein
JRY14_03380	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JRY14_03390	COG0582	viral genome integration into host DNA
JRY14_03405	COG3620	sequence-specific DNA binding
JRY14_03550	COG0582	viral genome integration into host DNA
JRY14_03660	COG3547	Transposase (IS116 IS110 IS902 family)
JRY14_03670	COG5632	N-Acetylmuramoyl-L-alanine amidase
JRY14_03670	COG1388	LysM domain
JRY14_03670	COG3409	Peptidoglycan-binding domain 1 protein
JRY14_03675	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
JRY14_03680	COG4807	Protein conserved in bacteria
JRY14_03705	COG1757	Na H antiporter
JRY14_03710	COG1473	amidohydrolase
JRY14_03725	COG0450	alkyl hydroperoxide reductase
JRY14_03745	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JRY14_03750	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JRY14_03755	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JRY14_03760	COG0492	ferredoxin-NADP+ reductase activity
JRY14_03770	COG0166	Belongs to the GPI family
JRY14_03795	COG5002	protein histidine kinase activity
JRY14_03815	COG3541	Predicted nucleotidyltransferase
JRY14_03820	COG2814	Major facilitator Superfamily
JRY14_03845	COG0765	amino acid transport
JRY14_03850	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JRY14_03860	COG0840	transmembrane signaling receptor activity
JRY14_03890	COG0549	Belongs to the carbamate kinase family
JRY14_03895	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JRY14_03910	COG0277	FAD linked oxidase domain protein
JRY14_03915	COG0366	Alpha amylase catalytic
JRY14_03920	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JRY14_03920	COG1263	PTS System
JRY14_03920	COG2190	(PTS) system
JRY14_03950	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
JRY14_03970	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JRY14_03975	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JRY14_03980	COG1116	anion transmembrane transporter activity
JRY14_04030	COG2270	Major facilitator Superfamily
JRY14_04055	COG1940	carbohydrate kinase activity
JRY14_04060	COG2310	stress, protein
JRY14_04065	COG2310	stress, protein
JRY14_04070	COG2310	stress, protein
JRY14_04075	COG0861	Integral membrane protein TerC family
JRY14_04085	COG3853	Toxic anion resistance protein (TelA)
JRY14_04095	COG2801	Transposase and inactivated derivatives
JRY14_04110	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
JRY14_04120	COG1295	ribonuclease BN
JRY14_04125	COG2217	Heavy metal translocating P-type atpase
JRY14_04130	COG0697	spore germination
JRY14_04140	COG0681	Belongs to the peptidase S26 family
JRY14_04150	COG0586	Pfam SNARE associated Golgi protein
JRY14_04170	COG2801	Transposase and inactivated derivatives
JRY14_04180	COG3871	stress protein (general stress protein 26)
JRY14_04185	COG0387	Pfam Sodium calcium exchanger
JRY14_04195	COG0535	radical SAM domain protein
JRY14_04215	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
JRY14_04220	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
JRY14_04235	COG3829	transcription factor binding
JRY14_04275	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JRY14_04305	COG1263	PTS System
JRY14_04305	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JRY14_04310	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JRY14_04325	COG0463	Glycosyl transferase, family 2
JRY14_04335	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
JRY14_04335	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JRY14_04355	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
JRY14_04375	COG1228	amidohydrolase
JRY14_04380	COG1090	epimerase
JRY14_04410	COG1988	membrane-bound metal-dependent
JRY14_04415	COG1194	a g-specific adenine glycosylase
JRY14_04440	COG1132	(ABC) transporter
JRY14_04445	COG4129	membrane
JRY14_04450	COG0067	glutamate synthase
JRY14_04450	COG0069	glutamate synthase activity
JRY14_04450	COG0070	glutamate synthase
JRY14_04460	COG4555	ABC transporter
JRY14_04480	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
JRY14_04485	COG0735	belongs to the Fur family
JRY14_04605	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
JRY14_04630	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
JRY14_04640	COG2766	serine protein kinase
JRY14_04660	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
JRY14_04670	COG1585	Membrane protein implicated in regulation of membrane protease activity
JRY14_04675	COG2268	Band 7 protein
JRY14_04685	COG3290	protein histidine kinase activity
JRY14_04690	COG4565	transcriptional regulatory protein
JRY14_04695	COG2851	Citrate transporter
JRY14_04715	COG3547	Transposase (IS116 IS110 IS902 family)
JRY14_04725	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
JRY14_04730	COG3842	ATPase activity
JRY14_04735	COG1175	transmembrane transport
JRY14_04740	COG0395	ABC-type sugar transport system, permease component
JRY14_04755	COG2801	Transposase and inactivated derivatives
JRY14_04760	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
JRY14_04765	COG0745	RESPONSE REGULATOR receiver
JRY14_04770	COG5002	protein histidine kinase activity
JRY14_04770	COG3850	Histidine kinase
JRY14_04780	COG4990	cell redox homeostasis
JRY14_04790	COG3290	protein histidine kinase activity
JRY14_04795	COG4565	transcriptional regulatory protein
JRY14_04800	COG3493	citrate carrier protein
JRY14_04805	COG0281	malic enzyme
JRY14_04815	COG0697	spore germination
JRY14_04820	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JRY14_04830	COG5002	protein histidine kinase activity
JRY14_04840	COG0456	acetyltransferase
JRY14_04840	COG0454	-acetyltransferase
JRY14_04845	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
JRY14_04855	COG3383	formate dehydrogenase (NAD+) activity
JRY14_04860	COG2427	Protein of unknown function (DUF1641)
JRY14_04875	COG0531	amino acid
JRY14_04885	COG0640	Transcriptional regulator
JRY14_04890	COG2217	Heavy metal translocating P-type atpase
JRY14_04895	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
JRY14_04905	COG3547	Transposase (IS116 IS110 IS902 family)
JRY14_04915	COG3227	Zinc metalloprotease (Elastase)
JRY14_04935	COG2720	vancomycin resistance protein
JRY14_04940	COG1316	TRANSCRIPTIONal
JRY14_04945	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JRY14_04955	COG0346	lactoylglutathione lyase activity
JRY14_04960	COG3547	Transposase (IS116 IS110 IS902 family)
JRY14_04965	COG1253	flavin adenine dinucleotide binding
JRY14_04970	COG1027	Aspartate ammonia-lyase
JRY14_04975	COG1620	l-lactate permease
JRY14_04990	COG3104	oligopeptide transport
JRY14_04995	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JRY14_05000	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JRY14_05005	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JRY14_05015	COG2226	methyltransferase
JRY14_05025	COG3344	reverse transcriptase
JRY14_05035	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
JRY14_05040	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
JRY14_05050	COG4548	von Willebrand factor, type A
JRY14_05055	COG0714	Associated with various cellular activities
JRY14_05075	COG0531	amino acid
JRY14_05080	COG2188	Transcriptional regulator
JRY14_05085	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JRY14_05085	COG1263	PTS System
JRY14_05090	COG0366	Alpha amylase catalytic
JRY14_05105	COG0697	spore germination
JRY14_05110	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
JRY14_05115	COG1115	amino acid carrier protein
JRY14_05120	COG1126	abc transporter atp-binding protein
JRY14_05125	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JRY14_05130	COG0765	amino acid transport
JRY14_05135	COG0765	amino acid transport
JRY14_05140	COG0833	amino acid
JRY14_05165	COG2378	regulation of single-species biofilm formation
JRY14_05170	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
JRY14_05175	COG5002	protein histidine kinase activity
JRY14_05190	COG0659	secondary active sulfate transmembrane transporter activity
JRY14_05205	COG2271	Major facilitator Superfamily
JRY14_05210	COG1846	Transcriptional regulator
JRY14_05215	COG0477	Major facilitator Superfamily
JRY14_05220	COG1609	Transcriptional regulator
JRY14_05225	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JRY14_05240	COG1172	Belongs to the binding-protein-dependent transport system permease family
JRY14_05245	COG1879	ABC-type sugar transport system periplasmic component
JRY14_05270	COG1063	alcohol dehydrogenase
JRY14_05335	COG0840	transmembrane signaling receptor activity
JRY14_05340	COG3584	3D domain protein
JRY14_05340	COG3583	domain protein
JRY14_05345	COG1476	TRANSCRIPTIONal
JRY14_05365	COG3104	oligopeptide transport
JRY14_05370	COG1114	Component of the transport system for branched-chain amino acids
JRY14_05385	COG1113	amino acid transport
JRY14_05390	COG2252	PERMEase
JRY14_05405	COG2153	protein acetylation
JRY14_05415	COG0475	glutathione-regulated potassium exporter activity
JRY14_05415	COG0569	domain protein
JRY14_05425	COG1845	cytochrome c oxidase, subunit III
JRY14_05430	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
JRY14_05440	COG0833	amino acid
JRY14_05445	COG4990	cell redox homeostasis
JRY14_05460	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JRY14_05465	COG0697	spore germination
JRY14_05470	COG0531	amino acid
JRY14_05485	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
JRY14_05490	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
JRY14_05495	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
JRY14_05495	COG1918	ferrous iron import across plasma membrane
JRY14_05500	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
JRY14_05505	COG0573	inorganic phosphate transmembrane transporter activity
JRY14_05510	COG0581	inorganic phosphate transmembrane transporter activity
JRY14_05520	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JRY14_05640	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
JRY14_05670	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
JRY14_05675	COG1116	anion transmembrane transporter activity
JRY14_05680	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JRY14_05685	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JRY14_05690	COG0352	thiamine-phosphate diphosphorylase activity
JRY14_05695	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JRY14_05700	COG2104	thiamine diphosphate biosynthetic process
JRY14_05710	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JRY14_05715	COG0351	phosphomethylpyrimidine kinase
JRY14_05755	COG2205	protein histidine kinase activity
JRY14_05760	COG2814	Major facilitator Superfamily
JRY14_05765	COG1846	Transcriptional regulator
JRY14_05775	COG2252	PERMEase
JRY14_05780	COG1028	Short-chain dehydrogenase reductase Sdr
JRY14_05795	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
JRY14_05800	COG1621	beta-fructofuranosidase activity
JRY14_05805	COG1263	PTS System
JRY14_05805	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JRY14_05810	COG1609	Transcriptional regulator
JRY14_05865	COG0778	Nitroreductase
JRY14_05870	COG2719	SpoVR family
JRY14_05895	COG0446	pyridine nucleotide-disulphide oxidoreductase
JRY14_05900	COG1937	Protein conserved in bacteria
JRY14_05905	COG0425	Belongs to the sulfur carrier protein TusA family
JRY14_05905	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JRY14_05910	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JRY14_05910	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JRY14_05915	COG0425	Belongs to the sulfur carrier protein TusA family
JRY14_05920	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JRY14_05920	COG0425	Belongs to the sulfur carrier protein TusA family
JRY14_05925	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JRY14_05930	COG2210	Belongs to the sulfur carrier protein TusA family
JRY14_05935	COG0730	response to heat
JRY14_05945	COG1316	TRANSCRIPTIONal
JRY14_05950	COG0604	alcohol dehydrogenase
JRY14_05955	COG1283	sodium-dependent phosphate transmembrane transporter activity
JRY14_05970	COG3711	transcriptional antiterminator
JRY14_05970	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JRY14_05975	COG1447	Phosphotransferase system cellobiose-specific component IIA
JRY14_05980	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JRY14_06000	COG1388	LysM domain
JRY14_06000	COG3584	3D domain protein
JRY14_06005	COG0577	efflux transmembrane transporter activity
JRY14_06010	COG1136	(ABC) transporter
JRY14_06020	COG5522	Integral membrane protein (intg_mem_TP0381)
JRY14_06035	COG1114	Component of the transport system for branched-chain amino acids
JRY14_06040	COG3546	catalase activity
JRY14_06075	COG0586	Pfam SNARE associated Golgi protein
JRY14_06110	COG0531	amino acid
JRY14_06115	COG0475	glutathione-regulated potassium exporter activity
JRY14_06125	COG1737	Transcriptional regulator
JRY14_06135	COG1263	PTS System
JRY14_06135	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JRY14_06145	COG2259	Doxx family
JRY14_06165	COG1522	sequence-specific DNA binding
JRY14_06170	COG1246	Belongs to the acetyltransferase family. ArgA subfamily
JRY14_06170	COG0165	Argininosuccinate lyase
JRY14_06195	COG1309	transcriptional regulator
JRY14_06200	COG2814	Major facilitator Superfamily
JRY14_06205	COG1733	regulation of RNA biosynthetic process
JRY14_06220	COG4533	DNA binding
JRY14_06225	COG2211	Major facilitator Superfamily
JRY14_06240	COG0693	protein deglycase activity
JRY14_06245	COG0753	catalase activity
JRY14_06255	COG0531	amino acid
JRY14_06260	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
JRY14_06270	COG1012	belongs to the aldehyde dehydrogenase family
JRY14_06275	COG1132	(ABC) transporter
JRY14_06280	COG1132	(ABC) transporter
JRY14_06290	COG0765	amino acid transport
JRY14_06295	COG1126	abc transporter atp-binding protein
JRY14_06310	COG0189	ligase activity
JRY14_06350	COG3527	Alpha-acetolactate decarboxylase
JRY14_06360	COG0561	phosphatase activity
JRY14_06370	COG5632	N-Acetylmuramoyl-L-alanine amidase
JRY14_06370	COG3409	Peptidoglycan-binding domain 1 protein
JRY14_06375	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JRY14_06380	COG0318	PFAM AMP-dependent synthetase and ligase
JRY14_06395	COG0659	secondary active sulfate transmembrane transporter activity
JRY14_06400	COG2244	polysaccharide biosynthetic process
JRY14_06425	COG1024	Enoyl-CoA hydratase
JRY14_06445	COG1363	Peptidase, m42
JRY14_06480	COG0601	transmembrane transport
JRY14_06485	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JRY14_06490	COG0444	Belongs to the ABC transporter superfamily
JRY14_06495	COG4608	Belongs to the ABC transporter superfamily
JRY14_06505	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JRY14_06525	COG0457	Tetratricopeptide repeat
JRY14_06645	COG0477	Major facilitator Superfamily
JRY14_06650	COG3290	protein histidine kinase activity
JRY14_06655	COG4565	transcriptional regulatory protein
JRY14_06660	COG3181	Tripartite tricarboxylate transporter family receptor
JRY14_06730	COG4978	Transcriptional regulator
JRY14_06730	COG0789	Transcriptional regulator
JRY14_06750	COG0305	Participates in initiation and elongation during chromosome replication
JRY14_06775	COG3547	Transposase (IS116 IS110 IS902 family)
JRY14_06790	COG0477	Major facilitator Superfamily
JRY14_06830	COG1073	alpha beta
JRY14_06875	COG1183	phosphatidylcholine synthase activity
JRY14_06890	COG2376	Dihydroxyacetone kinase
JRY14_06900	COG2376	Dihydroxyacetone kinase
JRY14_06935	COG1388	LysM domain
JRY14_06935	COG3584	3D domain protein
JRY14_06945	COG2373	Large extracellular alpha-helical protein
JRY14_06965	COG0596	Alpha beta hydrolase
JRY14_07015	COG1191	sigma factor activity
JRY14_07025	COG2208	phosphoserine phosphatase activity
JRY14_07030	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
JRY14_07035	COG0784	Response regulator, receiver
JRY14_07035	COG2205	protein histidine kinase activity
JRY14_07035	COG5002	protein histidine kinase activity
JRY14_07075	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
JRY14_07095	COG0420	3'-5' exonuclease activity
JRY14_07100	COG4717	serine-type aminopeptidase activity
JRY14_07115	COG4974	Belongs to the 'phage' integrase family
JRY14_07145	COG3646	Phage regulatory protein
JRY14_07250	COG3331	DNA recombination
JRY14_07260	COG1595	DNA-templated transcription, initiation
JRY14_07320	COG3547	Transposase (IS116 IS110 IS902 family)
JRY14_07390	COG4824	toxin secretion phage lysis holin
JRY14_07395	COG1388	LysM domain
JRY14_07395	COG3409	Peptidoglycan-binding domain 1 protein
JRY14_07395	COG5632	N-Acetylmuramoyl-L-alanine amidase
JRY14_07420	COG0346	lactoylglutathione lyase activity
JRY14_07425	COG0346	lactoylglutathione lyase activity
JRY14_07430	COG0457	Tetratricopeptide repeat
JRY14_07440	COG2267	carboxylic ester hydrolase activity
JRY14_07470	COG2140	Oxalate decarboxylase
JRY14_07480	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
JRY14_07490	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
JRY14_07500	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
JRY14_07505	COG1695	Transcriptional regulator
JRY14_07530	COG3973	AAA domain
JRY14_07560	COG4980	gas vesicle protein
JRY14_07565	COG0537	adenosine 5'-monophosphoramidase activity
JRY14_07570	COG1131	(ABC) transporter
JRY14_07575	COG4473	ABC transporter
JRY14_07600	COG3402	PFAM membrane-flanked domain
JRY14_07605	COG3428	Bacterial PH domain
JRY14_07645	COG0697	spore germination
JRY14_07650	COG3402	PFAM membrane-flanked domain
JRY14_07655	COG3428	Bacterial PH domain
JRY14_07660	COG2329	Antibiotic biosynthesis monooxygenase
JRY14_07665	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JRY14_07680	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
JRY14_07715	COG1309	transcriptional regulator
JRY14_07720	COG1511	domain protein
JRY14_07760	COG1609	Transcriptional regulator
JRY14_07770	COG1234	tRNA 3'-trailer cleavage
JRY14_07775	COG0095	Lipoate-protein ligase
JRY14_07785	COG0318	PFAM AMP-dependent synthetase and ligase
JRY14_07795	COG1613	Sulfate ABC transporter periplasmic sulfate-binding protein
JRY14_07805	COG4208	sulfate ABC transporter
JRY14_07850	COG1408	metallophosphoesterase
JRY14_07855	COG1078	dGTPase activity
JRY14_07865	COG1595	DNA-templated transcription, initiation
JRY14_07870	COG2207	Transcriptional regulator
JRY14_07870	COG3708	Transcriptional regulator
JRY14_07875	COG3547	Transposase (IS116 IS110 IS902 family)
JRY14_07885	COG2205	protein histidine kinase activity
JRY14_07890	COG0745	RESPONSE REGULATOR receiver
JRY14_07910	COG3547	Transposase (IS116 IS110 IS902 family)
JRY14_07915	COG0501	Belongs to the peptidase M48B family
JRY14_07920	COG0840	transmembrane signaling receptor activity
JRY14_07925	COG3693	PFAM glycoside hydrolase, family 10
JRY14_07935	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
JRY14_07945	COG2224	Isocitrate lyase
JRY14_07960	COG1278	Cold shock
JRY14_07985	COG0398	Pfam SNARE associated Golgi protein
JRY14_08045	COG0179	Fumarylacetoacetate (FAA) hydrolase
JRY14_08070	COG0367	asparagine synthase
JRY14_08320	COG2801	Transposase and inactivated derivatives
JRY14_08335	COG3611	Membrane attachment protein
JRY14_08350	COG0753	catalase activity
JRY14_08355	COG0004	ammonium transporteR
JRY14_08375	COG2996	Protein conserved in bacteria
JRY14_08390	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JRY14_08410	COG0561	phosphatase activity
JRY14_08430	COG2267	carboxylic ester hydrolase activity
JRY14_08450	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
JRY14_08455	COG5504	Zn-dependent protease
JRY14_08470	COG0180	Tryptophanyl-tRNA synthetase
JRY14_08495	COG0601	transmembrane transport
JRY14_08500	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
JRY14_08505	COG0444	Belongs to the ABC transporter superfamily
JRY14_08510	COG4608	Belongs to the ABC transporter superfamily
JRY14_08515	COG0534	Mate efflux family protein
JRY14_08520	COG4166	transmembrane transport
JRY14_08535	COG0861	Integral membrane protein TerC family
JRY14_08555	COG1164	Oligoendopeptidase f
JRY14_08570	COG2346	COG2346, Truncated hemoglobins
JRY14_08575	COG4116	CYTH
JRY14_08585	COG2357	RelA SpoT domain protein
JRY14_08595	COG0564	pseudouridine synthase activity
JRY14_08610	COG0772	Belongs to the SEDS family
JRY14_08615	COG1216	Glycosyl transferase, family 2
JRY14_08635	COG0463	Glycosyl transferase, family 2
JRY14_08635	COG0457	Tetratricopeptide repeat
JRY14_08655	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
JRY14_08670	COG1091	dTDP-4-dehydrorhamnose reductase activity
JRY14_08715	COG2153	protein acetylation
JRY14_08725	COG2382	esterase
JRY14_08750	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JRY14_08760	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
JRY14_08760	COG0512	Glutamine amidotransferase of anthranilate synthase
JRY14_08795	COG1620	l-lactate permease
JRY14_08800	COG5634	Uncharacterized conserved protein (DUF2278)
JRY14_08850	COG0508	dehydrogenase complex catalyzes the overall conversion of
JRY14_08860	COG1476	TRANSCRIPTIONal
JRY14_08920	COG1686	Belongs to the peptidase S11 family
JRY14_08925	COG0681	Belongs to the peptidase S26 family
JRY14_08960	COG1012	belongs to the aldehyde dehydrogenase family
JRY14_08970	COG1176	ABC-type spermidine putrescine transport system, permease component I
JRY14_08975	COG1177	transmembrane transport
JRY14_08990	COG2409	Drug exporters of the RND superfamily
JRY14_09000	COG0564	pseudouridine synthase activity
JRY14_09010	COG2340	Cysteine-rich secretory protein family
JRY14_09015	COG0247	lactate metabolic process
JRY14_09020	COG0277	FAD linked oxidase domain protein
JRY14_09025	COG3835	regulator
JRY14_09035	COG0745	RESPONSE REGULATOR receiver
JRY14_09040	COG5002	protein histidine kinase activity
JRY14_09045	COG2186	Transcriptional regulator
JRY14_09065	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
JRY14_09075	COG2116	formate transmembrane transporter activity
JRY14_09080	COG0861	Integral membrane protein TerC family
JRY14_09085	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JRY14_09095	COG2030	dehydratase
JRY14_09115	COG1028	Short-chain dehydrogenase reductase Sdr
JRY14_09120	COG3243	poly(R)-hydroxyalkanoic acid synthase
JRY14_09130	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JRY14_09145	COG1840	ABC-type Fe3 transport system, periplasmic component
JRY14_09150	COG3842	ATPase activity
JRY14_09175	COG1349	DNA-binding transcription factor activity
JRY14_09185	COG0235	Class ii aldolase
JRY14_09195	COG2861	carbohydrate metabolic process
JRY14_09205	COG3852	Histidine kinase
JRY14_09210	COG1846	Transcriptional regulator
JRY14_09220	COG2318	DinB family
JRY14_09225	COG5002	protein histidine kinase activity
JRY14_09235	COG0720	synthase
JRY14_09250	COG4873	Protein conserved in bacteria
JRY14_09280	COG1780	Probably involved in ribonucleotide reductase function
JRY14_09285	COG0209	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JRY14_09290	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
JRY14_09295	COG1725	Transcriptional regulator
JRY14_09300	COG1131	(ABC) transporter
JRY14_09310	COG1131	(ABC) transporter
JRY14_09315	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
JRY14_09330	COG1522	sequence-specific DNA binding
JRY14_09340	COG1335	isochorismatase
JRY14_09350	COG1619	proteins homologs of microcin C7 resistance protein MccF
JRY14_09355	COG2070	2-Nitropropane dioxygenase
JRY14_09360	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
JRY14_09370	COG1696	Membrane protein involved in D-alanine export
JRY14_09395	COG0716	FMN binding
JRY14_09450	COG1846	Transcriptional regulator
JRY14_09460	COG1301	dicarboxylic acid transport
JRY14_09465	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
JRY14_09470	COG4709	membrane
JRY14_09475	COG3874	Sporulation protein YtfJ
JRY14_09495	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JRY14_09500	COG0028	Belongs to the TPP enzyme family
JRY14_09505	COG0440	acetolactate synthase activity
JRY14_09580	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
JRY14_09595	COG1183	phosphatidylcholine synthase activity
JRY14_09600	COG1368	sulfuric ester hydrolase activity
JRY14_09610	COG0019	diaminopimelate decarboxylase activity
JRY14_09630	COG0529	Catalyzes the synthesis of activated sulfate
JRY14_09635	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JRY14_09655	COG1648	precorrin-2 dehydrogenase activity
JRY14_09660	COG0733	neurotransmitter:sodium symporter activity
JRY14_09685	COG1757	Na H antiporter
JRY14_09700	COG4758	membrane
JRY14_09705	COG4585	Histidine kinase
JRY14_09710	COG2197	response regulator
JRY14_09720	COG1114	Component of the transport system for branched-chain amino acids
JRY14_09790	COG0730	response to heat
JRY14_09795	COG0306	phosphate transporter
JRY14_09800	COG1392	Phosphate transport regulator
JRY14_09805	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JRY14_09820	COG3852	Histidine kinase
JRY14_09825	COG1801	Protein of unknown function DUF72
JRY14_09835	COG0582	viral genome integration into host DNA
JRY14_09840	COG5002	protein histidine kinase activity
JRY14_09855	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
JRY14_09855	COG0392	lysyltransferase activity
JRY14_09870	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
JRY14_09875	COG1686	Belongs to the peptidase S11 family
JRY14_09880	COG2715	membrane protein required for spore maturation
JRY14_09885	COG0700	Nucleoside recognition
JRY14_09890	COG1187	pseudouridine synthase activity
JRY14_09900	COG1333	cytochrome c biogenesis protein
JRY14_09905	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JRY14_09910	COG0745	RESPONSE REGULATOR receiver
JRY14_09915	COG5002	protein histidine kinase activity
JRY14_09920	COG2096	Adenosyltransferase
JRY14_09940	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
JRY14_09945	COG1141	Ferredoxin
JRY14_09955	COG0514	ATP-dependent DNA helicase (RecQ)
JRY14_09960	COG1266	CAAX protease self-immunity
JRY14_09975	COG0789	Transcriptional regulator
JRY14_09985	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
JRY14_10005	COG0492	ferredoxin-NADP+ reductase activity
JRY14_10010	COG0252	asparaginase activity
JRY14_10080	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
JRY14_10095	COG0142	geranyltranstransferase activity
JRY14_10105	COG0142	geranyltranstransferase activity
JRY14_10135	COG0457	Tetratricopeptide repeat
JRY14_10155	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
JRY14_10160	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
JRY14_10160	COG2010	Cytochrome c
JRY14_10165	COG4347	Protein of unknown function (DUF1405)
JRY14_10180	COG2738	Putative neutral zinc metallopeptidase
JRY14_10190	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JRY14_10195	COG1694	Mazg nucleotide pyrophosphohydrolase
JRY14_10215	COG0438	transferase activity, transferring glycosyl groups
JRY14_10250	COG1199	ATP-dependent helicase activity
JRY14_10250	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
JRY14_10270	COG3935	DnaD domain protein
JRY14_10275	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
JRY14_10285	COG4499	WXG100 protein secretion system (Wss), protein YukC
JRY14_10285	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JRY14_10340	COG0116	Belongs to the methyltransferase superfamily
JRY14_10360	COG0457	Tetratricopeptide repeat
JRY14_10380	COG1199	ATP-dependent helicase activity
JRY14_10385	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
JRY14_10395	COG0024	Methionine aminopeptidase
JRY14_10405	COG2233	PERMEase
JRY14_10410	COG2311	Membrane
JRY14_10420	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
JRY14_10430	COG0456	acetyltransferase
JRY14_10465	COG0754	glutathionylspermidine amidase activity
JRY14_10480	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JRY14_10495	COG3944	biosynthesis protein
JRY14_10505	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
JRY14_10520	COG1215	transferase activity, transferring glycosyl groups
JRY14_10525	COG0438	transferase activity, transferring glycosyl groups
JRY14_10540	COG0454	-acetyltransferase
JRY14_10560	COG0328	RNA-DNA hybrid ribonuclease activity
JRY14_10600	COG3403	YqcI/YcgG family
JRY14_10610	COG1280	lysine exporter protein (LysE YggA)
JRY14_10630	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JRY14_10635	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JRY14_10645	COG0475	glutathione-regulated potassium exporter activity
JRY14_10650	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
JRY14_10655	COG0789	Transcriptional regulator
JRY14_10655	COG4978	Transcriptional regulator
JRY14_10665	COG2323	membrane
JRY14_10670	COG1434	Gram-negative-bacterium-type cell wall biogenesis
JRY14_10710	COG1923	regulation of RNA biosynthetic process
JRY14_10720	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
JRY14_10725	COG1360	Flagellar Motor Protein
JRY14_10730	COG2201	protein-glutamate methylesterase activity
JRY14_10735	COG0643	Histidine kinase
JRY14_10735	COG2198	Histidine kinase
JRY14_10740	COG1776	CheC inhibitor of MCP methylation
JRY14_10740	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JRY14_10755	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
JRY14_10775	COG1256	bacterial-type flagellum assembly
JRY14_10780	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JRY14_10785	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
JRY14_10800	COG1815	bacterial-type flagellum-dependent cell motility
JRY14_10805	COG1558	bacterial-type flagellum-dependent cell motility
JRY14_10815	COG1766	The M ring may be actively involved in energy transduction
JRY14_10820	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JRY14_10830	COG1157	protein secretion by the type III secretion system
JRY14_10865	COG0835	chemotaxis
JRY14_10865	COG0784	Response regulator, receiver
JRY14_10875	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JRY14_10880	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JRY14_10885	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JRY14_10890	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
JRY14_10895	COG0741	lytic transglycosylase activity
JRY14_10905	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JRY14_10910	COG1776	CheC inhibitor of MCP methylation
JRY14_10910	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
JRY14_10920	COG1338	Plays a role in the flagellum-specific transport system
JRY14_10925	COG1987	bacterial-type flagellum assembly
JRY14_10935	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
JRY14_10940	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
JRY14_10945	COG1419	protein localization to endoplasmic reticulum
JRY14_10950	COG4786	Flagellar basal body rod
JRY14_10955	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
JRY14_11000	COG2329	Antibiotic biosynthesis monooxygenase
JRY14_11025	COG0583	DNA-binding transcription factor activity
JRY14_11045	COG1234	tRNA 3'-trailer cleavage
JRY14_11075	COG1686	Belongs to the peptidase S11 family
JRY14_11080	COG0406	alpha-ribazole phosphatase activity
JRY14_11110	COG0367	asparagine synthase
JRY14_11140	COG1802	Transcriptional regulator
JRY14_11145	COG0697	spore germination
JRY14_11155	COG0523	cobalamin synthesis protein
JRY14_11160	COG0701	Predicted permease
JRY14_11175	COG1757	Na H antiporter
JRY14_11180	COG0789	Transcriptional regulator
JRY14_11210	COG0534	Mate efflux family protein
JRY14_11215	COG3340	Belongs to the peptidase S51 family
JRY14_11235	COG0785	Cytochrome C biogenesis protein
JRY14_11240	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JRY14_11260	COG2733	membrane
JRY14_11295	COG1131	(ABC) transporter
JRY14_11315	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JRY14_11320	COG0528	UMP kinase activity
JRY14_11330	COG1027	Aspartate ammonia-lyase
JRY14_11335	COG2801	Transposase and inactivated derivatives
JRY14_11350	COG0281	malic enzyme
JRY14_11355	COG4191	Histidine kinase
JRY14_11360	COG0784	Response regulator, receiver
JRY14_11415	COG2814	Major facilitator Superfamily
JRY14_11430	COG1695	Transcriptional regulator
JRY14_11445	COG0477	Major facilitator Superfamily
JRY14_11460	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
JRY14_11480	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JRY14_11500	COG0733	neurotransmitter:sodium symporter activity
JRY14_11510	COG5566	PFAM Mor transcription activator
JRY14_11515	COG2323	membrane
JRY14_11535	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JRY14_11545	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JRY14_11550	COG0028	Belongs to the TPP enzyme family
JRY14_11570	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
JRY14_11590	COG2814	Major facilitator Superfamily
JRY14_11595	COG3384	dioxygenase
JRY14_11605	COG3279	Response regulator of the LytR AlgR family
JRY14_11610	COG0427	acetyl-CoA hydrolase
JRY14_11630	COG4166	transmembrane transport
JRY14_11635	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JRY14_11655	COG1914	H( )-stimulated, divalent metal cation uptake system
JRY14_11670	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JRY14_11675	COG0531	amino acid
JRY14_11705	COG2309	aminopeptidase activity
JRY14_11720	COG0456	acetyltransferase
JRY14_11770	COG1266	CAAX protease self-immunity
JRY14_11775	COG1309	transcriptional regulator
JRY14_11780	COG2390	Transcriptional regulator
JRY14_11790	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JRY14_11795	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
JRY14_11805	COG4846	Membrane protein involved in cytochrome C biogenesis
JRY14_11825	COG0583	DNA-binding transcription factor activity
JRY14_11840	COG0006	proline dipeptidase activity
JRY14_11850	COG2132	Multicopper oxidase
JRY14_11865	COG1309	transcriptional regulator
JRY14_11870	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
JRY14_11935	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
JRY14_11955	COG1114	Component of the transport system for branched-chain amino acids
JRY14_11965	COG1276	copper resistance
JRY14_11965	COG2372	response to copper ion
JRY14_11970	COG4549	nuclear export factor GLE1
JRY14_11990	COG0583	DNA-binding transcription factor activity
JRY14_11995	COG1959	2 iron, 2 sulfur cluster binding
JRY14_12005	COG0778	Nitroreductase
JRY14_12015	COG0628	permease
JRY14_12025	COG1231	oxidoreductase activity
JRY14_12030	COG0523	cobalamin synthesis protein
JRY14_12040	COG0411	ABC transporter
JRY14_12060	COG0583	DNA-binding transcription factor activity
JRY14_12090	COG1271	oxidase subunit
JRY14_12095	COG1294	oxidase, subunit
JRY14_12105	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
JRY14_12115	COG1216	Glycosyl transferase, family 2
JRY14_12155	COG1686	Belongs to the peptidase S11 family
JRY14_12170	COG1388	LysM domain
JRY14_12170	COG0791	NLP P60 protein
JRY14_12180	COG1132	(ABC) transporter
JRY14_12265	COG3645	SOS response
JRY14_12265	COG3646	Phage regulatory protein
JRY14_12295	COG0305	Participates in initiation and elongation during chromosome replication
JRY14_12460	COG1132	(ABC) transporter
JRY14_12465	COG0745	RESPONSE REGULATOR receiver
JRY14_12470	COG5002	protein histidine kinase activity
JRY14_12480	COG0300	oxidoreductase activity
JRY14_12510	COG3547	Transposase (IS116 IS110 IS902 family)
JRY14_12515	COG0460	homoserine dehydrogenase
JRY14_12540	COG1316	TRANSCRIPTIONal
JRY14_12550	COG0745	RESPONSE REGULATOR receiver
JRY14_12555	COG5002	protein histidine kinase activity
JRY14_12570	COG1285	pathogenesis
JRY14_12575	COG1247	-acetyltransferase
JRY14_12595	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JRY14_12605	COG1082	Xylose isomerase domain protein TIM barrel
JRY14_12615	COG2814	Major facilitator Superfamily
JRY14_12620	COG1279	arginine transmembrane transporter activity
JRY14_12625	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JRY14_12635	COG1752	Esterase of the alpha-beta hydrolase superfamily
JRY14_12675	COG0577	efflux transmembrane transporter activity
JRY14_12680	COG2002	toxin-antitoxin pair type II binding
JRY14_12685	COG1404	Belongs to the peptidase S8 family
JRY14_12690	COG0640	Transcriptional regulator
JRY14_12695	COG0667	Aldo Keto reductase
JRY14_12700	COG2814	Major facilitator Superfamily
JRY14_12725	COG0840	transmembrane signaling receptor activity
JRY14_12740	COG3949	Membrane
JRY14_12745	COG0783	Belongs to the Dps family
JRY14_12760	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JRY14_12770	COG1231	oxidoreductase activity
JRY14_12775	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JRY14_12780	COG4989	oxidoreductase activity
JRY14_12790	COG0523	cobalamin synthesis protein
JRY14_12795	COG0456	acetyltransferase
JRY14_12800	COG0803	Belongs to the bacterial solute-binding protein 9 family
JRY14_12815	COG0702	epimerase
JRY14_12825	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
JRY14_12835	COG4166	transmembrane transport
JRY14_12860	COG5337	Spore coat protein CotH
JRY14_12865	COG1051	belongs to the nudix hydrolase family
JRY14_12870	COG0586	Pfam SNARE associated Golgi protein
JRY14_12875	COG2244	polysaccharide biosynthetic process
JRY14_12885	COG0701	Predicted permease
JRY14_12890	COG3689	TIGRFAM TIGR03943 family protein
JRY14_12895	COG1607	acyl-coa hydrolase
JRY14_12905	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JRY14_12920	COG0702	epimerase
JRY14_12925	COG2839	Protein conserved in bacteria
JRY14_12930	COG1253	flavin adenine dinucleotide binding
JRY14_12945	COG1114	Component of the transport system for branched-chain amino acids
JRY14_12950	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JRY14_12970	COG0860	N-Acetylmuramoyl-L-alanine amidase
JRY14_12980	COG1876	peptidase activity
JRY14_12990	COG2211	Major facilitator Superfamily
JRY14_13005	COG0860	N-Acetylmuramoyl-L-alanine amidase
JRY14_13015	COG0561	phosphatase activity
JRY14_13030	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
JRY14_13045	COG1819	glycosyl
JRY14_13050	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JRY14_13055	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JRY14_13085	COG0456	acetyltransferase
JRY14_13120	COG4499	WXG100 protein secretion system (Wss), protein YukC
JRY14_13200	COG3874	Sporulation protein YtfJ
JRY14_13205	COG2801	Transposase and inactivated derivatives
JRY14_13235	COG2226	methyltransferase
JRY14_13255	COG1082	Xylose isomerase domain protein TIM barrel
JRY14_13260	COG0346	lactoylglutathione lyase activity
JRY14_13270	COG0604	alcohol dehydrogenase
JRY14_13290	COG0426	domain, Protein
JRY14_13290	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
JRY14_13300	COG0386	Belongs to the glutathione peroxidase family
JRY14_13305	COG1305	Transglutaminase-like
JRY14_13310	COG1721	protein (some members contain a von Willebrand factor type A (vWA) domain
JRY14_13315	COG0714	Associated with various cellular activities
JRY14_13320	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
JRY14_13325	COG1140	nitrate reductase beta subunit
JRY14_13330	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
JRY14_13335	COG2181	nitrate reductase activity
JRY14_13340	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JRY14_13345	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
JRY14_13350	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JRY14_13355	COG0303	'Molybdopterin
JRY14_13360	COG0314	molybdopterin synthase activity
JRY14_13370	COG2223	nitrite transmembrane transporter activity
JRY14_13390	COG1648	precorrin-2 dehydrogenase activity
JRY14_13400	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
JRY14_13400	COG1587	Uroporphyrinogen-III synthase
JRY14_13405	COG2146	nitrite reductase [NAD(P)H] activity
JRY14_13410	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
JRY14_13465	COG2359	stage V sporulation protein S
JRY14_13490	COG0457	Tetratricopeptide repeat
JRY14_13505	COG1418	mRNA catabolic process
JRY14_13510	COG0488	(ABC) transporter
JRY14_13525	COG0629	single-stranded DNA binding
JRY14_13540	COG1413	lyase activity
JRY14_13560	COG2136	Putative SAM-dependent methyltransferase
JRY14_13560	COG2521	methyltransferase
JRY14_13565	COG0018	arginyl-trna synthetase
JRY14_13600	COG3547	Transposase (IS116 IS110 IS902 family)
JRY14_13625	COG0017	Asparaginyl-tRNA synthetase
JRY14_13630	COG0733	neurotransmitter:sodium symporter activity
JRY14_13655	COG2610	gluconate transmembrane transporter activity
JRY14_13665	COG1794	racemase activity, acting on amino acids and derivatives
JRY14_13675	COG0456	acetyltransferase
JRY14_13685	COG3655	Transcriptional regulator
JRY14_13690	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
JRY14_13700	COG1131	(ABC) transporter
JRY14_13705	COG4473	ABC transporter
JRY14_13715	COG0546	phosphoglycolate phosphatase activity
JRY14_13730	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JRY14_13745	COG0768	penicillin binding
JRY14_13755	COG0204	Acyl-transferase
JRY14_13760	COG1272	protein, Hemolysin III
JRY14_13770	COG0805	protein transport
JRY14_13780	COG1307	EDD domain protein, DegV family
JRY14_13790	COG1999	signal sequence binding
JRY14_13795	COG0071	Belongs to the small heat shock protein (HSP20) family
JRY14_13800	COG0367	asparagine synthase
JRY14_13820	COG0860	N-Acetylmuramoyl-L-alanine amidase
JRY14_13825	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JRY14_13830	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
JRY14_13855	COG1335	isochorismatase
JRY14_13875	COG0668	transmembrane transport
JRY14_13880	COG4585	Histidine kinase
JRY14_13880	COG2203	Gaf domain
JRY14_13885	COG2197	response regulator
JRY14_13890	COG1737	Transcriptional regulator
JRY14_13910	COG1064	alcohol dehydrogenase
JRY14_13925	COG1070	Carbohydrate kinase
JRY14_13935	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
JRY14_13970	COG0517	IMP dehydrogenase activity
JRY14_13970	COG1125	glycine betaine transport
JRY14_13975	COG1174	glycine betaine transport
JRY14_14010	COG1253	flavin adenine dinucleotide binding
JRY14_14015	COG1012	belongs to the aldehyde dehydrogenase family
JRY14_14020	COG5506	Protein of unknown function (DUF1694)
JRY14_14035	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JRY14_14040	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
JRY14_14045	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
JRY14_14050	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JRY14_14055	COG0456	acetyltransferase
JRY14_14060	COG3829	transcription factor binding
JRY14_14070	COG1509	lysine 2,3-aminomutase activity
JRY14_14105	COG0515	serine threonine protein kinase
JRY14_14105	COG3064	Membrane
JRY14_14105	COG4991	sh3 domain protein
JRY14_14115	COG0671	phosphoesterase, PA-phosphatase related
JRY14_14120	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
JRY14_14125	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JRY14_14225	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JRY14_14225	COG4499	WXG100 protein secretion system (Wss), protein YukC
JRY14_14235	COG2814	Major facilitator Superfamily
JRY14_14240	COG4841	protein insertion into membrane
JRY14_14245	COG0372	Belongs to the citrate synthase family
JRY14_14250	COG2079	MmgE PrpD family protein
JRY14_14255	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
JRY14_14260	COG1960	acyl-CoA dehydrogenase activity
JRY14_14265	COG2084	Dehydrogenase
JRY14_14275	COG1280	lysine exporter protein (LysE YggA)
JRY14_14280	COG1024	Enoyl-CoA hydratase
JRY14_14295	COG0420	3'-5' exonuclease activity
JRY14_14300	COG0419	ATPase involved in DNA repair
JRY14_14330	COG2223	nitrite transmembrane transporter activity
JRY14_14335	COG1028	Short-chain dehydrogenase reductase Sdr
JRY14_14340	COG1169	isochorismate synthase
JRY14_14345	COG1021	2,3-dihydroxybenzoate-AMP ligase
JRY14_14350	COG1535	isochorismatase
JRY14_14350	COG3433	isochorismatase activity
JRY14_14355	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
JRY14_14360	COG3251	PFAM MbtH domain protein
JRY14_14365	COG2814	Major facilitator Superfamily
JRY14_14380	COG0776	regulation of translation
JRY14_14390	COG2318	DinB family
JRY14_14400	COG1115	amino acid carrier protein
JRY14_14420	COG1187	pseudouridine synthase activity
JRY14_14425	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
JRY14_14430	COG1136	(ABC) transporter
JRY14_14440	COG2814	Major facilitator Superfamily
JRY14_14455	COG0028	Belongs to the TPP enzyme family
JRY14_14500	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JRY14_14520	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JRY14_14555	COG1247	-acetyltransferase
JRY14_14580	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
JRY14_14590	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JRY14_14620	COG0583	DNA-binding transcription factor activity
JRY14_14625	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
JRY14_14645	COG0583	DNA-binding transcription factor activity
JRY14_14650	COG2258	MOSC domain
JRY14_14665	COG1132	(ABC) transporter
JRY14_14700	COG1396	sequence-specific DNA binding
JRY14_14730	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JRY14_14735	COG1595	DNA-templated transcription, initiation
JRY14_14760	COG1649	PFAM Uncharacterised BCR, COG1649
JRY14_14785	COG2971	BadF BadG BcrA BcrD
JRY14_14795	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
JRY14_14805	COG1846	Transcriptional regulator
JRY14_14820	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JRY14_14850	COG2002	toxin-antitoxin pair type II binding
JRY14_14890	COG0582	viral genome integration into host DNA
JRY14_14915	COG0500	methyltransferase
JRY14_14915	COG3615	Tellurite resistance protein tehB
JRY14_14925	COG2226	methyltransferase
JRY14_14930	COG3961	Belongs to the TPP enzyme family
JRY14_14935	COG1846	Transcriptional regulator
JRY14_14965	COG2195	Cleaves the N-terminal amino acid of tripeptides
JRY14_14995	COG2002	toxin-antitoxin pair type II binding
JRY14_15010	COG0730	response to heat
JRY14_15015	COG0110	maltose O-acetyltransferase activity
JRY14_15020	COG1686	Belongs to the peptidase S11 family
JRY14_15035	COG2814	Major facilitator Superfamily
JRY14_15055	COG3547	Transposase (IS116 IS110 IS902 family)
JRY14_15115	COG3344	reverse transcriptase
JRY14_15145	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JRY14_15200	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JRY14_15205	COG0768	penicillin binding
JRY14_15210	COG1595	DNA-templated transcription, initiation
JRY14_15220	COG0768	penicillin binding
JRY14_15225	COG0768	penicillin binding
JRY14_15235	COG1408	metallophosphoesterase
JRY14_15245	COG1131	(ABC) transporter
JRY14_15255	COG1309	transcriptional regulator
JRY14_15270	COG1960	acyl-CoA dehydrogenase activity
JRY14_15275	COG0439	Biotin carboxylase
JRY14_15280	COG0511	ligase activity, forming carbon-carbon bonds
JRY14_15285	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
JRY14_15290	COG1024	Enoyl-CoA hydratase
JRY14_15295	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
JRY14_15300	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JRY14_15310	COG3547	Transposase (IS116 IS110 IS902 family)
JRY14_15325	COG0572	uridine kinase
JRY14_15335	COG2318	DinB family
JRY14_15340	COG1686	Belongs to the peptidase S11 family
JRY14_15365	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
JRY14_15380	COG3227	Zinc metalloprotease (Elastase)
JRY14_15385	COG2207	Transcriptional regulator
JRY14_15430	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
JRY14_15470	COG2814	Major facilitator Superfamily
JRY14_15475	COG1028	Short-chain dehydrogenase reductase Sdr
JRY14_15480	COG1733	regulation of RNA biosynthetic process
JRY14_15535	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JRY14_15545	COG2368	4-hydroxyphenylacetate
JRY14_15560	COG1063	alcohol dehydrogenase
JRY14_15570	COG2323	membrane
JRY14_15585	COG3386	PFAM SMP-30 Gluconolaconase
JRY14_15595	COG1384	Belongs to the class-I aminoacyl-tRNA synthetase family
JRY14_15600	COG3773	Cell wall hydrolase
JRY14_15605	COG0596	Alpha beta hydrolase
JRY14_15620	COG0745	RESPONSE REGULATOR receiver
JRY14_15625	COG2205	protein histidine kinase activity
JRY14_15635	COG0488	(ABC) transporter
JRY14_15660	COG1136	(ABC) transporter
JRY14_15665	COG0577	efflux transmembrane transporter activity
JRY14_15700	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JRY14_15710	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
JRY14_15770	COG2124	cytochrome p450
JRY14_15805	COG0561	phosphatase activity
JRY14_15810	COG5002	protein histidine kinase activity
JRY14_15815	COG0768	penicillin binding
JRY14_15825	COG1819	glycosyl
JRY14_15830	COG1794	racemase activity, acting on amino acids and derivatives
JRY14_15855	COG2205	protein histidine kinase activity
JRY14_15865	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
JRY14_15870	COG0604	alcohol dehydrogenase
JRY14_15875	COG0671	phosphoesterase, PA-phosphatase related
JRY14_15880	COG0768	penicillin binding
JRY14_15940	COG2132	Multicopper oxidase
JRY14_15950	COG0789	Transcriptional regulator
JRY14_15970	COG0584	glycerophosphoryl diester phosphodiesterase
JRY14_15990	COG2801	Transposase and inactivated derivatives
JRY14_16005	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JRY14_16010	COG0697	spore germination
JRY14_16045	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
JRY14_16055	COG2223	nitrite transmembrane transporter activity
JRY14_16070	COG0592	DNA-directed DNA polymerase activity
JRY14_16090	COG3878	Protein conserved in bacteria
JRY14_16110	COG4667	esterase of the alpha-beta hydrolase superfamily
JRY14_16150	COG0322	excinuclease ABC activity
JRY14_16200	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JRY14_16235	COG1011	Hydrolase
JRY14_16240	COG0745	RESPONSE REGULATOR receiver
JRY14_16245	COG5002	protein histidine kinase activity
JRY14_16260	COG1136	(ABC) transporter
JRY14_16265	COG0577	efflux transmembrane transporter activity
JRY14_16270	COG1073	alpha beta
JRY14_16295	COG0076	glutamate decarboxylase activity
JRY14_16315	COG3227	Zinc metalloprotease (Elastase)
JRY14_16320	COG0737	Belongs to the 5'-nucleotidase family
JRY14_16335	COG0201	protein transport
JRY14_16340	COG0697	spore germination
JRY14_16345	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JRY14_16385	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JRY14_16400	COG2959	enzyme of heme biosynthesis
JRY14_16460	COG1309	transcriptional regulator
JRY14_16485	COG3284	Transcriptional regulator
JRY14_16505	COG1349	DNA-binding transcription factor activity
JRY14_16520	COG1959	2 iron, 2 sulfur cluster binding
JRY14_16535	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JRY14_16540	COG0508	dehydrogenase complex catalyzes the overall conversion of
JRY14_16545	COG0022	dehydrogenase e1 component
JRY14_16550	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
JRY14_16560	COG1028	Short-chain dehydrogenase reductase Sdr
JRY14_16565	COG0456	acetyltransferase
JRY14_16565	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
JRY14_16605	COG4176	ABC-type proline glycine betaine transport system permease component
JRY14_16610	COG0517	IMP dehydrogenase activity
JRY14_16610	COG4175	Glycine betaine
JRY14_16640	COG2153	protein acetylation
JRY14_16645	COG3397	chitin binding
JRY14_16650	COG1819	glycosyl
JRY14_16670	COG2205	protein histidine kinase activity
JRY14_16675	COG2226	methyltransferase
JRY14_16680	COG2315	Protein conserved in bacteria
JRY14_16720	COG0456	acetyltransferase
JRY14_16725	COG3973	AAA domain
JRY14_16740	COG0514	ATP-dependent DNA helicase (RecQ)
JRY14_16780	COG2801	Transposase and inactivated derivatives
JRY14_16795	COG4637	Psort location Cytoplasmic, score
JRY14_16810	COG3397	chitin binding
JRY14_16825	COG1162	GTPase activity
JRY14_16830	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
JRY14_16835	COG1115	amino acid carrier protein
JRY14_16840	COG1012	belongs to the aldehyde dehydrogenase family
JRY14_16845	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
JRY14_16855	COG3938	Belongs to the proline racemase family
JRY14_16860	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
JRY14_16905	COG0586	Pfam SNARE associated Golgi protein
JRY14_16915	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
JRY14_16925	COG4166	transmembrane transport
JRY14_16940	COG4948	Mandelate Racemase Muconate Lactonizing
JRY14_16955	COG0667	Aldo Keto reductase
JRY14_17000	COG5002	protein histidine kinase activity
JRY14_17000	COG3850	Histidine kinase
JRY14_17005	COG0745	RESPONSE REGULATOR receiver
JRY14_17040	COG1164	Oligoendopeptidase f
JRY14_17045	COG1307	EDD domain protein, DegV family
JRY14_17085	COG2814	Major facilitator Superfamily
JRY14_17095	COG1664	Polymer-forming cytoskeletal
JRY14_17100	COG0789	Transcriptional regulator
JRY14_17105	COG4533	DNA binding
JRY14_17110	COG2814	Major facilitator Superfamily
JRY14_17110	COG0477	Major facilitator Superfamily
JRY14_17130	COG2261	transglycosylase associated protein
JRY14_17145	COG2226	methyltransferase
JRY14_17180	COG0436	Aminotransferase
JRY14_17185	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
JRY14_17195	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
JRY14_17235	COG0628	permease
JRY14_17245	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JRY14_17250	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JRY14_17255	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JRY14_17295	COG2746	aminoglycoside 3-N-acetyltransferase activity
JRY14_17320	COG2318	DinB family
JRY14_17340	COG4912	Dna alkylation repair
JRY14_17345	COG0346	lactoylglutathione lyase activity
JRY14_17365	COG0861	Integral membrane protein TerC family
JRY14_17370	COG1368	sulfuric ester hydrolase activity
JRY14_17375	COG0488	(ABC) transporter
JRY14_17380	COG2409	Drug exporters of the RND superfamily
JRY14_17380	COG1033	growth of symbiont in host cell
JRY14_17385	COG1309	transcriptional regulator
JRY14_17395	COG3547	Transposase (IS116 IS110 IS902 family)
JRY14_17410	COG0287	Prephenate dehydrogenase
JRY14_17425	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
JRY14_17425	COG1605	Chorismate mutase
JRY14_17470	COG1388	LysM domain
JRY14_17470	COG3584	3D domain protein
JRY14_17480	COG0346	lactoylglutathione lyase activity
JRY14_17485	COG0277	FAD linked oxidase domain protein
JRY14_17515	COG1879	ABC-type sugar transport system periplasmic component
JRY14_17520	COG1172	Belongs to the binding-protein-dependent transport system permease family
JRY14_17525	COG1172	Belongs to the binding-protein-dependent transport system permease family
JRY14_17535	COG2390	Transcriptional regulator
JRY14_17540	COG1070	Carbohydrate kinase
JRY14_17560	COG2329	Antibiotic biosynthesis monooxygenase
JRY14_17580	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JRY14_17595	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JRY14_17600	COG4187	Peptidase family M20/M25/M40
JRY14_17605	COG1414	Transcriptional regulator
JRY14_17610	COG0833	amino acid
JRY14_17660	COG2720	vancomycin resistance protein
JRY14_17665	COG1785	Belongs to the alkaline phosphatase family
JRY14_17675	COG3655	Transcriptional regulator
JRY14_17700	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JRY14_17705	COG0346	lactoylglutathione lyase activity
JRY14_17730	COG0714	Associated with various cellular activities
JRY14_17755	COG0463	Glycosyl transferase, family 2
JRY14_17785	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
JRY14_17790	COG0753	catalase activity
JRY14_17835	COG0714	Associated with various cellular activities
JRY14_17900	COG0778	Nitroreductase
JRY14_17905	COG1846	Transcriptional regulator
JRY14_17930	COG4884	unkown
JRY14_17930	COG3831	ATPase activity
JRY14_17955	COG0456	acetyltransferase
JRY14_17970	COG0697	spore germination
JRY14_17975	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JRY14_18015	COG0730	response to heat
JRY14_18030	COG0833	amino acid
JRY14_18040	COG4335	DNA alkylation repair
JRY14_18070	COG0768	penicillin binding
JRY14_18095	COG3547	Transposase (IS116 IS110 IS902 family)
JRY14_18105	COG1984	allophanate hydrolase subunit 2
JRY14_18110	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
JRY14_18115	COG1414	Transcriptional regulator
JRY14_18130	COG0640	Transcriptional regulator
JRY14_18145	COG1960	acyl-CoA dehydrogenase activity
JRY14_18165	COG2801	Transposase and inactivated derivatives
JRY14_18180	COG2801	Transposase and inactivated derivatives
JRY14_18185	COG3314	Sporulation integral membrane protein YlbJ
JRY14_18205	COG1633	Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME)
JRY14_18225	COG2801	Transposase and inactivated derivatives
JRY14_18245	COG3848	Pyruvate phosphate dikinase
JRY14_18245	COG0574	Belongs to the PEP-utilizing enzyme family
JRY14_18250	COG1819	glycosyl
JRY14_18255	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JRY14_18260	COG5577	PFAM Coat F domain
JRY14_18265	COG3403	YqcI/YcgG family
JRY14_18270	COG1280	lysine exporter protein (LysE YggA)
JRY14_18275	COG1113	amino acid transport
JRY14_18305	COG1063	alcohol dehydrogenase
JRY14_18315	COG1027	Aspartate ammonia-lyase
JRY14_18320	COG0252	asparaginase activity
JRY14_18325	COG1396	sequence-specific DNA binding
JRY14_18370	COG5002	protein histidine kinase activity
JRY14_18395	COG2207	Transcriptional regulator
JRY14_18410	COG0322	excinuclease ABC activity
JRY14_18415	COG0531	amino acid
JRY14_18420	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JRY14_18430	COG0281	malic enzyme
JRY14_18460	COG0531	amino acid
JRY14_18465	COG0697	spore germination
JRY14_18470	COG0784	Response regulator, receiver
JRY14_18475	COG4191	Histidine kinase
JRY14_18480	COG2066	Belongs to the glutaminase family
JRY14_18485	COG1115	amino acid carrier protein
JRY14_18495	COG2124	cytochrome p450
JRY14_18510	COG1309	transcriptional regulator
JRY14_18515	COG2814	Major facilitator Superfamily
JRY14_18520	COG1309	transcriptional regulator
JRY14_18530	COG1522	sequence-specific DNA binding
JRY14_18545	COG0346	lactoylglutathione lyase activity
JRY14_18595	COG3547	Transposase (IS116 IS110 IS902 family)
JRY14_18650	COG2814	Major facilitator Superfamily
JRY14_18660	COG2515	1-aminocyclopropane-1-carboxylate deaminase
JRY14_18670	COG1690	Belongs to the RtcB family
JRY14_18680	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
JRY14_18705	COG0577	efflux transmembrane transporter activity
JRY14_18725	COG3850	Histidine kinase
JRY14_18725	COG5002	protein histidine kinase activity
JRY14_18735	COG2364	Membrane
JRY14_18740	COG1846	Transcriptional regulator
JRY14_18745	COG0456	acetyltransferase
JRY14_18750	COG2808	Putative FMN-binding domain
JRY14_18755	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JRY14_18790	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
JRY14_18835	COG3409	Peptidoglycan-binding domain 1 protein
JRY14_18835	COG5632	N-Acetylmuramoyl-L-alanine amidase
JRY14_18940	COG1876	peptidase activity
JRY14_18945	COG2843	Capsule synthesis protein
JRY14_18955	COG0477	Major facilitator Superfamily
JRY14_18970	COG1846	Transcriptional regulator
JRY14_18975	COG2814	Major facilitator Superfamily
JRY14_18985	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
JRY14_18990	COG1131	(ABC) transporter
JRY14_19010	COG2031	fatty acid transporter
JRY14_19020	COG2249	NAD(P)H dehydrogenase (quinone) activity
JRY14_19075	COG1288	antiporter activity
JRY14_19080	COG2356	endonuclease I
JRY14_19105	COG1733	regulation of RNA biosynthetic process
JRY14_19110	COG0778	Nitroreductase
JRY14_19120	COG0469	pyruvate kinase activity
JRY14_19140	COG1028	Short-chain dehydrogenase reductase Sdr
JRY14_19150	COG1131	(ABC) transporter
JRY14_19175	COG1011	Hydrolase
JRY14_19180	COG2365	Tyrosine phosphatase family
JRY14_19215	COG0628	permease
JRY14_19245	COG0500	methyltransferase
JRY14_19285	COG1253	flavin adenine dinucleotide binding
JRY14_19290	COG0789	Transcriptional regulator
JRY14_19300	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
JRY14_19330	COG0697	spore germination
JRY14_19335	COG1357	PFAM Pentapeptide repeats (8 copies)
JRY14_19340	COG3813	Protein conserved in bacteria
JRY14_19345	COG2706	6-phosphogluconolactonase activity
JRY14_19350	COG1070	Carbohydrate kinase
JRY14_19365	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
JRY14_19370	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
JRY14_19375	COG0021	Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate
JRY14_19380	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
JRY14_19385	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
JRY14_19390	COG0604	alcohol dehydrogenase
JRY14_19395	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
JRY14_19405	COG1028	Short-chain dehydrogenase reductase Sdr
JRY14_19420	COG0840	transmembrane signaling receptor activity
JRY14_19430	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JRY14_19430	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JRY14_19435	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
JRY14_19435	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
JRY14_19440	COG1733	regulation of RNA biosynthetic process
JRY14_19455	COG0656	L-ascorbic acid biosynthetic process
JRY14_19460	COG2814	Major facilitator Superfamily
JRY14_19485	COG2824	Alkylphosphonate utilization operon protein PhnA
JRY14_19490	COG0659	secondary active sulfate transmembrane transporter activity
JRY14_19505	COG0814	amino acid
JRY14_19530	COG3547	Transposase (IS116 IS110 IS902 family)
JRY14_19545	COG1733	regulation of RNA biosynthetic process
JRY14_19550	COG2188	Transcriptional regulator
JRY14_19555	COG0673	inositol 2-dehydrogenase activity
JRY14_19560	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
JRY14_19565	COG1733	regulation of RNA biosynthetic process
JRY14_19570	COG1733	regulation of RNA biosynthetic process
JRY14_19605	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JRY14_19630	COG0384	phenazine biosynthesis protein PhzF
JRY14_19640	COG1028	Short-chain dehydrogenase reductase Sdr
JRY14_19660	COG0318	PFAM AMP-dependent synthetase and ligase
JRY14_19665	COG2249	NAD(P)H dehydrogenase (quinone) activity
JRY14_19670	COG1733	regulation of RNA biosynthetic process
JRY14_19685	COG3547	Transposase (IS116 IS110 IS902 family)
JRY14_19690	COG2801	Transposase and inactivated derivatives
JRY14_19710	COG1191	sigma factor activity
JRY14_19735	COG3326	Membrane
JRY14_19750	COG0489	protein tyrosine kinase activity
JRY14_19760	COG0314	molybdopterin synthase activity
JRY14_19765	COG0303	'Molybdopterin
JRY14_19770	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JRY14_19775	COG2116	formate transmembrane transporter activity
JRY14_19785	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
JRY14_19790	COG5609	conserved protein (DUF2294)
JRY14_19795	COG2427	Protein of unknown function (DUF1641)
JRY14_19800	COG3383	formate dehydrogenase (NAD+) activity
JRY14_19805	COG0697	spore germination
JRY14_19820	COG0531	amino acid
JRY14_19855	COG2226	methyltransferase
JRY14_19860	COG4166	transmembrane transport
JRY14_19865	COG4166	transmembrane transport
JRY14_19870	COG4166	transmembrane transport
JRY14_19875	COG1301	dicarboxylic acid transport
JRY14_19880	COG1316	TRANSCRIPTIONal
JRY14_19890	COG1595	DNA-templated transcription, initiation
JRY14_19905	COG1131	(ABC) transporter
JRY14_19915	COG0673	inositol 2-dehydrogenase activity
JRY14_19920	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
JRY14_19925	COG0187	DNA topoisomerase II activity
JRY14_19930	COG1832	CoA-binding protein
JRY14_19935	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JRY14_19940	COG0745	RESPONSE REGULATOR receiver
JRY14_19960	COG4841	protein insertion into membrane
JRY14_19970	COG0824	Thioesterase
JRY14_20000	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JRY14_20010	COG1132	(ABC) transporter
JRY14_20015	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
JRY14_20045	COG2211	Major facilitator Superfamily
JRY14_20055	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
JRY14_20070	COG0183	Belongs to the thiolase family
JRY14_20075	COG0318	PFAM AMP-dependent synthetase and ligase
JRY14_20080	COG1268	BioY protein
JRY14_20085	COG0318	PFAM AMP-dependent synthetase and ligase
JRY14_20130	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JRY14_20140	COG5002	protein histidine kinase activity
JRY14_20145	COG0400	carboxylic ester hydrolase activity
JRY14_20150	COG0346	lactoylglutathione lyase activity
JRY14_20155	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
JRY14_20165	COG0069	glutamate synthase activity
JRY14_20175	COG3344	reverse transcriptase
JRY14_20185	COG1329	Transcriptional regulator
JRY14_20190	COG0010	Belongs to the arginase family
JRY14_20240	COG4846	Membrane protein involved in cytochrome C biogenesis
JRY14_20245	COG0785	Cytochrome C biogenesis protein
JRY14_20255	COG1473	amidohydrolase
JRY14_20280	COG0583	DNA-binding transcription factor activity
JRY14_20290	COG1346	cytolysis
JRY14_20305	COG0730	response to heat
JRY14_20330	COG1132	(ABC) transporter
JRY14_20335	COG1132	(ABC) transporter
JRY14_20360	COG3639	organic phosphonate transmembrane transporter activity
JRY14_20385	COG0737	Belongs to the 5'-nucleotidase family
JRY14_20395	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
JRY14_20415	COG1695	Transcriptional regulator
JRY14_20425	COG1388	LysM domain
JRY14_20425	COG5632	N-Acetylmuramoyl-L-alanine amidase
JRY14_20425	COG3409	Peptidoglycan-binding domain 1 protein
JRY14_20430	COG0739	heme binding
JRY14_20435	COG0741	lytic transglycosylase activity
JRY14_20470	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
JRY14_20475	COG0174	glutamine synthetase
JRY14_20480	COG0789	Transcriptional regulator
JRY14_20485	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
JRY14_20490	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
JRY14_20495	COG2860	membrane
JRY14_20505	COG0464	growth
JRY14_20540	COG1388	LysM domain
JRY14_20540	COG3584	3D domain protein
JRY14_20545	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JRY14_20545	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JRY14_20545	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JRY14_20550	COG1105	Belongs to the carbohydrate kinase PfkB family
JRY14_20555	COG1349	DNA-binding transcription factor activity
JRY14_20560	COG1979	alcohol dehydrogenase
JRY14_20565	COG2322	membrane
JRY14_20575	COG1113	amino acid transport
JRY14_20585	COG1408	metallophosphoesterase
JRY14_20590	COG2116	formate transmembrane transporter activity
JRY14_20605	COG2217	Heavy metal translocating P-type atpase
JRY14_20610	COG2608	mercury ion transmembrane transporter activity
JRY14_20615	COG1937	Protein conserved in bacteria
JRY14_20625	COG2819	hydrolase of the alpha beta superfamily
JRY14_20630	COG1120	ATPase activity
JRY14_20635	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JRY14_20640	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JRY14_20645	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JRY14_20655	COG2169	Transcriptional regulator
JRY14_20660	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
JRY14_20665	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
JRY14_20685	COG2267	carboxylic ester hydrolase activity
JRY14_20690	COG3300	MHYT domain
JRY14_20690	COG5001	Diguanylate cyclase
JRY14_20730	COG1346	cytolysis
JRY14_20740	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
JRY14_20750	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
JRY14_20765	COG1404	Belongs to the peptidase S8 family
JRY14_20770	COG3773	Cell wall hydrolase
JRY14_20780	COG1368	sulfuric ester hydrolase activity
JRY14_20785	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
JRY14_20810	COG4550	Control of competence regulator ComK, YlbF/YmcA
JRY14_20820	COG1013	pyruvate-flavodoxin oxidoreductase activity
JRY14_20825	COG0674	pyruvate-flavodoxin oxidoreductase activity
JRY14_20825	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
JRY14_20835	COG2359	stage V sporulation protein S
JRY14_20840	COG1692	metallophosphoesterase
JRY14_20860	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
JRY14_20865	COG1426	Protein conserved in bacteria
JRY14_20880	COG0300	oxidoreductase activity
JRY14_20885	COG0612	Peptidase, M16
JRY14_20890	COG0612	Peptidase, M16
JRY14_20895	COG1079	Belongs to the binding-protein-dependent transport system permease family
JRY14_20900	COG4603	Belongs to the binding-protein-dependent transport system permease family
JRY14_20905	COG3845	ABC transporter
JRY14_20910	COG1744	ABC transporter substrate-binding protein PnrA-like
JRY14_20915	COG2188	Transcriptional regulator
JRY14_20935	COG0740	serine-type endopeptidase activity
JRY14_20940	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
JRY14_20950	COG0527	aspartate kinase activity
JRY14_20955	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
JRY14_20960	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
JRY14_20965	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JRY14_20970	COG1873	PFAM PRC-barrel domain
JRY14_20975	COG0612	Peptidase, M16
JRY14_20980	COG0726	polysaccharide deacetylase
JRY14_20995	COG0196	riboflavin kinase activity
JRY14_21005	COG0858	One of several proteins that assist in the late maturation steps of the functional core of the 30S ribosomal subunit. Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Required for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA
JRY14_21010	COG1550	Protein conserved in bacteria
JRY14_21020	COG1358	cellular component organization or biogenesis
JRY14_21025	COG2740	Nucleic-acid-binding protein implicated in transcription termination
JRY14_21030	COG0195	Participates in both transcription termination and antitermination
JRY14_21050	COG0750	zinc metalloprotease
JRY14_21060	COG4589	Belongs to the CDS family
JRY14_21105	COG4974	Belongs to the 'phage' integrase family
JRY14_21115	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
JRY14_21120	COG0758	DNA mediated transformation
JRY14_21125	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
JRY14_21165	COG1837	Belongs to the UPF0109 family
JRY14_21175	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
JRY14_21185	COG0552	protein localization to endoplasmic reticulum
JRY14_21190	COG1196	nuclear chromosome segregation
JRY14_21200	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
JRY14_21205	COG1028	Short-chain dehydrogenase reductase Sdr
JRY14_21210	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
JRY14_21225	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
JRY14_21230	COG1461	Dihydroxyacetone kinase
JRY14_21235	COG1302	Protein conserved in bacteria
JRY14_21250	COG1564	THIamine pyrophosphokinase
JRY14_21255	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
JRY14_21265	COG2815	serine threonine protein kinase
JRY14_21265	COG0515	serine threonine protein kinase
JRY14_21270	COG0631	protein serine/threonine phosphatase activity
JRY14_21280	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
JRY14_21280	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
JRY14_21295	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
JRY14_21300	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
JRY14_21320	COG1561	YicC-like family, N-terminal region
JRY14_21325	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
JRY14_21335	COG0006	proline dipeptidase activity
JRY14_21350	COG3069	C4-dicarboxylate transmembrane transporter activity
JRY14_21410	COG0564	pseudouridine synthase activity
JRY14_21430	COG3599	regulation of cell shape
JRY14_21435	COG2302	S4 RNA-binding domain
JRY14_21440	COG0762	integral membrane protein
JRY14_21450	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
JRY14_21460	COG1873	PFAM PRC-barrel domain
JRY14_21465	COG1191	sigma factor activity
JRY14_21470	COG1191	sigma factor activity
JRY14_21480	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
JRY14_21485	COG0849	cell division
JRY14_21505	COG0772	Belongs to the SEDS family
JRY14_21525	COG0768	penicillin binding
JRY14_21530	COG0768	penicillin binding
JRY14_21550	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
JRY14_21565	COG0333	Belongs to the bacterial ribosomal protein bL32 family
JRY14_21570	COG1399	metal-binding, possibly nucleic acid-binding protein
JRY14_21600	COG2801	Transposase and inactivated derivatives
JRY14_21610	COG5632	N-Acetylmuramoyl-L-alanine amidase
JRY14_21610	COG1388	LysM domain
JRY14_21610	COG3409	Peptidoglycan-binding domain 1 protein
JRY14_21615	COG4824	toxin secretion phage lysis holin
JRY14_21620	COG3547	Transposase (IS116 IS110 IS902 family)
JRY14_21730	COG0582	viral genome integration into host DNA
JRY14_21745	COG3547	Transposase (IS116 IS110 IS902 family)
JRY14_21755	COG0028	Belongs to the TPP enzyme family
JRY14_21785	COG1484	DNA-dependent DNA replication
JRY14_21815	COG1396	sequence-specific DNA binding
JRY14_21850	COG0582	viral genome integration into host DNA
JRY14_21860	COG3480	Lon protease (S16) C-terminal proteolytic domain
JRY14_21865	COG1752	Esterase of the alpha-beta hydrolase superfamily
JRY14_21870	COG3314	Sporulation integral membrane protein YlbJ
JRY14_21880	COG0742	ribosomal rna small subunit methyltransferase
JRY14_21895	COG3679	Belongs to the UPF0342 family
JRY14_21900	COG0406	alpha-ribazole phosphatase activity
JRY14_21915	COG2340	Cysteine-rich secretory protein family
JRY14_21930	COG3336	cytochrome c oxidase
JRY14_21965	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
JRY14_21970	COG0772	Belongs to the SEDS family
JRY14_21980	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
JRY14_21985	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
JRY14_21995	COG4896	Protein conserved in bacteria
JRY14_22010	COG1217	gtp-binding protein TYPA
JRY14_22020	COG0483	inositol monophosphate 1-phosphatase activity
JRY14_22040	COG1982	Orn Lys Arg decarboxylase major
JRY14_22090	COG0022	dehydrogenase e1 component
JRY14_22095	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
JRY14_22110	COG0561	phosphatase activity
JRY14_22120	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
JRY14_22125	COG0569	domain protein
JRY14_22145	COG0583	DNA-binding transcription factor activity
JRY14_22150	COG0517	IMP dehydrogenase activity
JRY14_22160	COG1978	Selenoprotein B, glycine betaine sarcosine D-proline reductase family
JRY14_22170	COG4703	Protein of unknown function (DUF1797)
JRY14_22185	COG2200	EAL domain
JRY14_22190	COG1028	Short-chain dehydrogenase reductase Sdr
JRY14_22195	COG1408	metallophosphoesterase
JRY14_22240	COG2814	Major facilitator Superfamily
JRY14_22260	COG3209	COG3209 Rhs family protein
JRY14_22270	COG2205	protein histidine kinase activity
JRY14_22280	COG0436	Aminotransferase
JRY14_22285	COG1609	Transcriptional regulator
JRY14_22290	COG3833	ABC-type maltose transport systems, permease component
JRY14_22295	COG1175	transmembrane transport
JRY14_22300	COG2182	Extracellular solute-binding protein
JRY14_22310	COG0366	Alpha amylase catalytic
JRY14_22315	COG3842	ATPase activity
JRY14_22360	COG0183	Belongs to the thiolase family
JRY14_22395	COG1695	Transcriptional regulator
JRY14_22400	COG1028	Short-chain dehydrogenase reductase Sdr
JRY14_22430	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
JRY14_22435	COG0436	Aminotransferase
JRY14_22470	COG2084	Dehydrogenase
JRY14_22480	COG2199	diguanylate cyclase activity
JRY14_22485	COG0778	Nitroreductase
JRY14_22510	COG1263	PTS System
JRY14_22510	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
JRY14_22510	COG2190	(PTS) system
JRY14_22515	COG3711	transcriptional antiterminator
JRY14_22525	COG2188	Transcriptional regulator
JRY14_22535	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
JRY14_22560	COG1547	Domain of unknown function (DUF309)
JRY14_22565	COG0456	acetyltransferase
JRY14_22570	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
JRY14_22575	COG4086	secreted protein
JRY14_22580	COG2801	Transposase and inactivated derivatives
JRY14_22590	COG0561	phosphatase activity
JRY14_22595	COG0697	spore germination
JRY14_22645	COG0733	neurotransmitter:sodium symporter activity
JRY14_22665	COG1686	Belongs to the peptidase S11 family
JRY14_22670	COG1725	Transcriptional regulator
JRY14_22675	COG1131	(ABC) transporter
JRY14_22695	COG1846	Transcriptional regulator
JRY14_22710	COG0598	Magnesium transport protein CorA
JRY14_22735	COG4974	Belongs to the 'phage' integrase family
JRY14_22745	COG0735	belongs to the Fur family
JRY14_22750	COG1300	Membrane
JRY14_22770	COG0667	Aldo Keto reductase
JRY14_22775	COG0656	L-ascorbic acid biosynthetic process
JRY14_22780	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
JRY14_22780	COG0456	acetyltransferase
JRY14_22790	COG4085	toxin activity
JRY14_22790	COG0737	Belongs to the 5'-nucleotidase family
JRY14_22790	COG1525	nuclease
JRY14_22800	COG0596	Alpha beta hydrolase
JRY14_22805	COG2056	Na+-H+ antiporter family
JRY14_22810	COG1609	Transcriptional regulator
JRY14_22815	COG0456	acetyltransferase
JRY14_22820	COG1073	alpha beta
JRY14_22835	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JRY14_22835	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
JRY14_22840	COG0307	riboflavin synthase, alpha
JRY14_22870	COG1073	alpha beta
JRY14_22870	COG2226	methyltransferase
JRY14_22885	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
JRY14_22895	COG1757	Na H antiporter
JRY14_22900	COG0737	Belongs to the 5'-nucleotidase family
JRY14_22910	COG1522	sequence-specific DNA binding
JRY14_22955	COG0300	oxidoreductase activity
JRY14_22960	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JRY14_22965	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JRY14_22970	COG1760	l-serine dehydratase
JRY14_22975	COG1760	l-serine dehydratase
JRY14_23010	COG1285	pathogenesis
JRY14_23020	COG2195	Cleaves the N-terminal amino acid of tripeptides
JRY14_23025	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JRY14_23040	COG1376	ErfK ybiS ycfS ynhG family protein
JRY14_23045	COG4129	membrane
JRY14_23050	COG1126	abc transporter atp-binding protein
JRY14_23055	COG0765	amino acid transport
JRY14_23060	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
JRY14_23075	COG2816	NAD+ diphosphatase activity
JRY14_23080	COG2323	membrane
JRY14_23085	COG0772	Belongs to the SEDS family
JRY14_23090	COG0508	dehydrogenase complex catalyzes the overall conversion of
JRY14_23095	COG0022	dehydrogenase e1 component
JRY14_23100	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
JRY14_23105	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
JRY14_23120	COG0280	phosphate acetyltransferase
JRY14_23125	COG3290	protein histidine kinase activity
JRY14_23125	COG3829	transcription factor binding
JRY14_23135	COG0584	glycerophosphoryl diester phosphodiesterase
JRY14_23140	COG3093	addiction module antidote protein HigA
JRY14_23160	COG0750	zinc metalloprotease
JRY14_23165	COG0497	DNA recombination
JRY14_23190	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
JRY14_23200	COG0142	geranyltranstransferase activity
JRY14_23225	COG1302	Protein conserved in bacteria
JRY14_23230	COG0439	Biotin carboxylase
JRY14_23235	COG0511	ligase activity, forming carbon-carbon bonds
JRY14_23280	COG3854	ATPases associated with a variety of cellular activities
JRY14_23305	COG0006	proline dipeptidase activity
JRY14_23320	COG3872	metal-dependent enzyme
JRY14_23330	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
JRY14_23345	COG1695	Transcriptional regulator
JRY14_23365	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JRY14_23375	COG1609	Transcriptional regulator
JRY14_23385	COG2076	Multidrug Resistance protein
JRY14_23390	COG2076	Multidrug Resistance protein
JRY14_23425	COG1725	Transcriptional regulator
JRY14_23455	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
JRY14_23520	COG1459	type II secretion system
JRY14_23525	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
JRY14_23580	COG0646	methionine synthase
JRY14_23580	COG1410	methionine synthase
JRY14_23585	COG0646	methionine synthase
JRY14_23585	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
JRY14_23590	COG0626	cystathionine gamma-synthase activity
JRY14_23595	COG0626	cystathionine gamma-synthase activity
JRY14_23620	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JRY14_23630	COG1940	carbohydrate kinase activity
JRY14_23635	COG4483	Protein conserved in bacteria
JRY14_23640	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
JRY14_23645	COG0267	Belongs to the bacterial ribosomal protein bL33 family
JRY14_23650	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
JRY14_23655	COG0704	Plays a role in the regulation of phosphate uptake
JRY14_23665	COG0573	inorganic phosphate transmembrane transporter activity
JRY14_23670	COG0573	inorganic phosphate transmembrane transporter activity
JRY14_23675	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
JRY14_23680	COG0768	penicillin binding
JRY14_23685	COG0477	Major facilitator Superfamily
JRY14_23690	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
JRY14_23700	COG5521	maltodextrose utilization protein MalA
JRY14_23715	COG0735	belongs to the Fur family
JRY14_23720	COG1108	ABC-type Mn2 Zn2 transport systems permease components
JRY14_23725	COG1121	(ABC) transporter
JRY14_23730	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JRY14_23760	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
JRY14_23765	COG2384	SAM-dependent methyltransferase
JRY14_23775	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
JRY14_23780	COG0358	DNA primase activity
JRY14_23795	COG0517	IMP dehydrogenase activity
JRY14_23810	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
JRY14_23815	COG0295	cytidine deaminase activity
JRY14_23820	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
JRY14_23830	COG1480	7TM receptor with intracellular HD hydrolase
JRY14_23835	COG1702	phosphate starvation-inducible protein PhoH
JRY14_23855	COG1610	YqeY-like protein
JRY14_23860	COG0828	Belongs to the bacterial ribosomal protein bS21 family
JRY14_23865	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
JRY14_23870	COG1385	rRNA (uridine-N3-)-methyltransferase activity
JRY14_23900	COG0635	Involved in the biosynthesis of porphyrin-containing compound
JRY14_23905	COG1733	regulation of RNA biosynthetic process
JRY14_23915	COG2801	Transposase and inactivated derivatives
JRY14_23940	COG1466	dna polymerase III delta subunit
JRY14_23955	COG2131	deaminase
JRY14_23960	COG1555	photosystem II stabilization
JRY14_23960	COG1596	polysaccharide export
JRY14_23965	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
JRY14_23970	COG2226	methyltransferase
JRY14_23975	COG0799	negative regulation of ribosome biogenesis
JRY14_23980	COG1713	HD superfamily hydrolase involved in NAD metabolism
JRY14_23990	COG1534	Rna-binding protein
JRY14_24000	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
JRY14_24005	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
JRY14_24040	COG0778	Nitroreductase
JRY14_24045	COG2357	RelA SpoT domain protein
JRY14_24055	COG1785	Belongs to the alkaline phosphatase family
JRY14_24065	COG2267	carboxylic ester hydrolase activity
JRY14_24100	COG1404	Belongs to the peptidase S8 family
JRY14_24115	COG2514	catechol 2,3-dioxygenase activity
JRY14_24120	COG2259	Doxx family
JRY14_24160	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JRY14_24170	COG1454	alcohol dehydrogenase
JRY14_24170	COG1012	belongs to the aldehyde dehydrogenase family
JRY14_24175	COG0626	cystathionine gamma-synthase activity
JRY14_24180	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
JRY14_24225	COG0826	peptidase U32
JRY14_24230	COG0826	peptidase U32
JRY14_24235	COG4122	O-methyltransferase activity
JRY14_24240	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
JRY14_24270	COG0628	permease
JRY14_24290	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
JRY14_24305	COG1104	cysteine desulfurase activity
JRY14_24310	COG1959	2 iron, 2 sulfur cluster binding
JRY14_24315	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
JRY14_24325	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
JRY14_24350	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
JRY14_24360	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
JRY14_24360	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
JRY14_24365	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
JRY14_24370	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JRY14_24370	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
JRY14_24380	COG2244	polysaccharide biosynthetic process
JRY14_24385	COG2323	membrane
JRY14_24400	COG1862	Preprotein translocase
JRY14_24430	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
JRY14_24465	COG0157	Belongs to the NadC ModD family
JRY14_24470	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
JRY14_24475	COG1104	cysteine desulfurase activity
JRY14_24480	COG1827	regulation of RNA biosynthetic process
JRY14_24485	COG2258	MOSC domain
JRY14_24490	COG0077	Prephenate dehydratase
JRY14_24495	COG0577	efflux transmembrane transporter activity
JRY14_24500	COG0577	efflux transmembrane transporter activity
JRY14_24505	COG1136	(ABC) transporter
JRY14_24510	COG5002	protein histidine kinase activity
JRY14_24515	COG0745	RESPONSE REGULATOR receiver
JRY14_24525	COG3290	protein histidine kinase activity
JRY14_24535	COG2868	ribosomal protein
JRY14_24545	COG1530	ribonuclease E activity
JRY14_24550	COG1994	Peptidase M50
JRY14_24555	COG0739	heme binding
JRY14_24560	COG2894	cell division
JRY14_24580	COG1077	Cell shape determining protein MreB Mrl
JRY14_24610	COG5632	N-Acetylmuramoyl-L-alanine amidase
JRY14_24610	COG3409	Peptidoglycan-binding domain 1 protein
JRY14_24610	COG1388	LysM domain
JRY14_24615	COG4824	toxin secretion phage lysis holin
JRY14_24735	COG3547	Transposase (IS116 IS110 IS902 family)
JRY14_24750	COG1595	DNA-templated transcription, initiation
JRY14_24760	COG3331	DNA recombination
JRY14_24855	COG3646	Phage regulatory protein
JRY14_24875	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
JRY14_24895	COG0285	dihydrofolate synthase activity
JRY14_24910	COG1388	LysM domain
JRY14_24920	COG0113	porphobilinogen synthase activity
JRY14_24925	COG1587	Uroporphyrinogen-III synthase
JRY14_24935	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
JRY14_24945	COG1846	Transcriptional regulator
JRY14_24955	COG1764	response to oxidative stress
JRY14_24970	COG0470	DNA polymerase III
JRY14_24970	COG1067	ATP-dependent peptidase activity
JRY14_25015	COG0622	Phosphoesterase
JRY14_25030	COG5401	PFAM Sporulation and spore germination
JRY14_25050	COG1309	transcriptional regulator
JRY14_25060	COG2197	response regulator
JRY14_25065	COG2233	PERMEase
JRY14_25070	COG0402	S-adenosylhomocysteine deaminase activity
JRY14_25075	COG1983	PspC domain protein
JRY14_25080	COG1396	sequence-specific DNA binding
JRY14_25085	COG0697	spore germination
JRY14_25095	COG1959	2 iron, 2 sulfur cluster binding
JRY14_25100	COG1668	transmembrane transport
JRY14_25105	COG4152	abc transporter atp-binding protein
JRY14_25110	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
JRY14_25115	COG1360	Flagellar Motor Protein
JRY14_25120	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
JRY14_25125	COG1876	peptidase activity
JRY14_25130	COG0824	Thioesterase
JRY14_25135	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
JRY14_25140	COG1053	succinate dehydrogenase
JRY14_25145	COG2009	succinate dehydrogenase
JRY14_25150	COG1719	4-vinyl reductase, 4VR
JRY14_25160	COG3118	belongs to the thioredoxin family
JRY14_25165	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
JRY14_25170	COG2086	electron transfer activity
JRY14_25175	COG1024	Enoyl-CoA hydratase
JRY14_25180	COG1309	transcriptional regulator
JRY14_25185	COG0318	PFAM AMP-dependent synthetase and ligase
JRY14_25215	COG2318	DinB family
JRY14_25240	COG1131	(ABC) transporter
JRY14_25245	COG2205	protein histidine kinase activity
JRY14_25250	COG0745	RESPONSE REGULATOR receiver
JRY14_25260	COG4895	conserved protein (DUF2196)
JRY14_25265	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
JRY14_25275	COG4509	Sortase family
JRY14_25280	COG1120	ATPase activity
JRY14_25295	COG5386	Cell surface protein
JRY14_25305	COG5386	Cell surface protein
JRY14_25310	COG1114	Component of the transport system for branched-chain amino acids
JRY14_25315	COG1187	pseudouridine synthase activity
JRY14_25325	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
JRY14_25325	COG1796	DNA polymerase
JRY14_25330	COG1286	toxin biosynthetic process
JRY14_25370	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
JRY14_25380	COG1418	mRNA catabolic process
JRY14_25395	COG2814	Major facilitator Superfamily
JRY14_25400	COG1566	PFAM secretion protein HlyD family protein
JRY14_25405	COG1309	transcriptional regulator
JRY14_25410	COG1363	Peptidase, m42
JRY14_25435	COG2801	Transposase and inactivated derivatives
JRY14_25445	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
JRY14_25460	COG1484	DNA-dependent DNA replication
JRY14_25465	COG3611	Membrane attachment protein
JRY14_25475	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
JRY14_25480	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JRY14_25490	COG1971	Probably functions as a manganese efflux pump
JRY14_25500	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JRY14_25500	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
JRY14_25505	COG5002	protein histidine kinase activity
JRY14_25510	COG0745	RESPONSE REGULATOR receiver
JRY14_25525	COG0538	isocitrate dehydrogenase activity
JRY14_25530	COG0372	Belongs to the citrate synthase family
JRY14_25540	COG0628	permease
JRY14_25545	COG3030	protein affecting phage T7 exclusion by the F plasmid
JRY14_25570	COG1725	Transcriptional regulator
JRY14_25575	COG0281	malic enzyme
JRY14_25580	COG0587	DNA-directed DNA polymerase activity
JRY14_25595	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
JRY14_25610	COG4109	DRTGG domain
JRY14_25625	COG0006	proline dipeptidase activity
JRY14_25650	COG3547	Transposase (IS116 IS110 IS902 family)
JRY14_25660	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JRY14_25665	COG0662	Cupin 2, conserved barrel domain protein
JRY14_25680	COG1028	Short-chain dehydrogenase reductase Sdr
JRY14_25685	COG0589	response to stress
JRY14_25725	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JRY14_25750	COG0827	DNA restriction-modification system
JRY14_25755	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
JRY14_25760	COG3874	Sporulation protein YtfJ
JRY14_25775	COG1574	metal-dependent hydrolase with the TIM-barrel fold
JRY14_25785	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JRY14_25800	COG1104	cysteine desulfurase activity
JRY14_25825	COG0697	spore germination
JRY14_25830	COG1309	transcriptional regulator
JRY14_25835	COG1956	GAF domain-containing protein
JRY14_25840	COG0626	cystathionine gamma-synthase activity
JRY14_25870	COG0110	maltose O-acetyltransferase activity
JRY14_25875	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
JRY14_25880	COG0454	-acetyltransferase
JRY14_25885	COG0517	IMP dehydrogenase activity
JRY14_25890	COG0123	including yeast histone deacetylase and acetoin utilization protein
JRY14_25905	COG0745	RESPONSE REGULATOR receiver
JRY14_25915	COG0666	response to abiotic stimulus
JRY14_25950	COG1609	Transcriptional regulator
JRY14_25955	COG1605	Chorismate mutase
JRY14_25955	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
JRY14_25960	COG4851	CamS sex pheromone cAM373 precursor
JRY14_25965	COG3118	belongs to the thioredoxin family
JRY14_25975	COG2309	aminopeptidase activity
JRY14_25990	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JRY14_26005	COG1674	ftsk spoiiie
JRY14_26010	COG0860	N-Acetylmuramoyl-L-alanine amidase
JRY14_26010	COG1388	LysM domain
JRY14_26020	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
JRY14_26030	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JRY14_26035	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
JRY14_26040	COG1363	Peptidase, m42
JRY14_26050	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JRY14_26070	COG0510	thiamine kinase activity
JRY14_26080	COG1523	belongs to the glycosyl hydrolase 13 family
JRY14_26090	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
JRY14_26095	COG1349	DNA-binding transcription factor activity
JRY14_26100	COG1187	pseudouridine synthase activity
JRY14_26105	COG2244	polysaccharide biosynthetic process
JRY14_26110	COG2081	HI0933 family
JRY14_26135	COG3832	glyoxalase III activity
JRY14_26155	COG1329	Transcriptional regulator
JRY14_26180	COG0314	molybdopterin synthase activity
JRY14_26185	COG1763	Mo-molybdopterin cofactor biosynthetic process
JRY14_26190	COG0303	'Molybdopterin
JRY14_26200	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
JRY14_26205	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
JRY14_26225	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
JRY14_26235	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
JRY14_26285	COG0475	glutathione-regulated potassium exporter activity
JRY14_26290	COG0490	domain, Protein
JRY14_26295	COG0582	viral genome integration into host DNA
JRY14_26305	COG1136	(ABC) transporter
JRY14_26325	COG1242	4 iron, 4 sulfur cluster binding
JRY14_26330	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
JRY14_26335	COG1794	racemase activity, acting on amino acids and derivatives
JRY14_26350	COG2267	carboxylic ester hydrolase activity
JRY14_26355	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
JRY14_26360	COG0671	phosphoesterase, PA-phosphatase related
JRY14_26365	COG0438	transferase activity, transferring glycosyl groups
JRY14_26385	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JRY14_26435	COG5002	protein histidine kinase activity
JRY14_26440	COG3852	Histidine kinase
JRY14_26445	COG0753	catalase activity
JRY14_26455	COG2267	carboxylic ester hydrolase activity
JRY14_26460	COG1368	sulfuric ester hydrolase activity
JRY14_26485	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
JRY14_26490	COG1116	anion transmembrane transporter activity
JRY14_26495	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
JRY14_26520	COG2801	Transposase and inactivated derivatives
JRY14_26535	COG0494	nUDIX hydrolase
JRY14_26565	COG1854	S-ribosylhomocysteine lyase activity
JRY14_26575	COG0288	reversible hydration of carbon dioxide
JRY14_26580	COG1271	oxidase subunit
JRY14_26585	COG1294	oxidase, subunit
JRY14_26600	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JRY14_26625	COG1842	Phage shock protein A
JRY14_26655	COG5002	protein histidine kinase activity
JRY14_26660	COG0745	RESPONSE REGULATOR receiver
JRY14_26685	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
JRY14_26690	COG1597	lipid kinase activity
JRY14_26710	COG3344	reverse transcriptase
JRY14_26755	COG0586	Pfam SNARE associated Golgi protein
JRY14_26765	COG0577	efflux transmembrane transporter activity
JRY14_26770	COG1136	(ABC) transporter
JRY14_26775	COG2207	Transcriptional regulator
JRY14_26775	COG3708	Transcriptional regulator
JRY14_26795	COG5658	integral membrane protein
JRY14_26800	COG0640	Transcriptional regulator
JRY14_26805	COG0745	RESPONSE REGULATOR receiver
JRY14_26810	COG2205	protein histidine kinase activity
JRY14_26815	COG0577	efflux transmembrane transporter activity
JRY14_26820	COG0577	efflux transmembrane transporter activity
JRY14_26825	COG1136	(ABC) transporter
JRY14_26830	COG0577	efflux transmembrane transporter activity
JRY14_26855	COG2188	Transcriptional regulator
JRY14_26875	COG3964	amidohydrolase
JRY14_26895	COG4948	Mandelate Racemase Muconate Lactonizing
JRY14_26905	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
JRY14_26910	COG0596	Alpha beta hydrolase
JRY14_26920	COG1169	isochorismate synthase
JRY14_26925	COG1575	Belongs to the MenA family. Type 1 subfamily
JRY14_26930	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
JRY14_26955	COG0058	SHG alpha-glucan phosphorylase activity
JRY14_26965	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
JRY14_26985	COG1404	Belongs to the peptidase S8 family
JRY14_27085	COG0544	peptidyl-prolyl cis-trans isomerase activity
JRY14_27120	COG1285	pathogenesis
JRY14_27125	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
JRY14_27140	COG2155	Conserved Protein
JRY14_27145	COG1098	S1 RNA binding domain
JRY14_27150	COG0436	Aminotransferase
JRY14_27155	COG1522	sequence-specific DNA binding
JRY14_27160	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
JRY14_27165	COG2267	carboxylic ester hydrolase activity
JRY14_27175	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
JRY14_27195	COG5018	Exonuclease
JRY14_27200	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
JRY14_27220	COG2050	protein possibly involved in aromatic compounds catabolism
JRY14_27230	COG1268	BioY protein
JRY14_27235	COG1210	Utp--glucose-1-phosphate uridylyltransferase
JRY14_27240	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
JRY14_27260	COG2076	Multidrug Resistance protein
JRY14_27265	COG0382	Catalyzes the prenylation of para-hydroxybenzoate (PHB) with an all-trans polyprenyl group. Mediates the second step in the final reaction sequence of ubiquinone-8 (UQ-8) biosynthesis, which is the condensation of the polyisoprenoid side chain with PHB, generating the first membrane-bound Q intermediate 3- octaprenyl-4-hydroxybenzoate
JRY14_27275	COG3584	3D domain protein
JRY14_27290	COG1252	NADH dehydrogenase
JRY14_27305	COG3708	Transcriptional regulator
JRY14_27320	COG1683	Conserved Protein
JRY14_27375	COG4824	toxin secretion phage lysis holin
JRY14_27515	COG1191	sigma factor activity
JRY14_27540	COG3645	SOS response
JRY14_27540	COG3646	Phage regulatory protein
JRY14_27560	COG1396	sequence-specific DNA binding
JRY14_27600	COG0316	Belongs to the HesB IscA family
JRY14_27615	COG1252	NADH dehydrogenase
JRY14_27625	COG2274	protein secretion by the type I secretion system
JRY14_27630	COG0390	transport system, permease component
JRY14_27635	COG2824	Alkylphosphonate utilization operon protein PhnA
JRY14_27680	COG3344	reverse transcriptase
JRY14_27710	COG4837	Protein of unknown function (DUF1462)
JRY14_27715	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
JRY14_27725	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
JRY14_27730	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
JRY14_27750	COG1358	cellular component organization or biogenesis
JRY14_27760	COG2249	NAD(P)H dehydrogenase (quinone) activity
JRY14_27770	COG0647	UMP catabolic process
JRY14_27780	COG2445	Protein of unknown function DUF86
JRY14_27785	COG1494	fructose-1,6-bisphosphatase
JRY14_27805	COG4470	Protein conserved in bacteria
JRY14_27815	COG0789	Transcriptional regulator
JRY14_27820	COG4377	Putative membrane peptidase family (DUF2324)
JRY14_27845	COG0739	heme binding
JRY14_27855	COG3377	Domain of unknown function (DUF1805)
JRY14_27860	COG0737	Belongs to the 5'-nucleotidase family
JRY14_27865	COG0719	Fe-S assembly protein
JRY14_27870	COG0822	iron-sulfur transferase activity
JRY14_27875	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
JRY14_27880	COG0719	Fe-S assembly protein
JRY14_27885	COG0396	ATPase activity
JRY14_27890	COG1464	Belongs to the NlpA lipoprotein family
JRY14_27895	COG1464	Belongs to the NlpA lipoprotein family
JRY14_27900	COG2011	ABC-type metal ion transport system permease component
JRY14_27915	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
JRY14_27920	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
JRY14_27930	COG1393	Belongs to the ArsC family
JRY14_27970	COG1309	transcriptional regulator
JRY14_27975	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
JRY14_27980	COG1960	acyl-CoA dehydrogenase activity
JRY14_27985	COG0183	Belongs to the thiolase family
JRY14_27990	COG1024	Enoyl-CoA hydratase
JRY14_27990	COG1250	3-hydroxyacyl-CoA dehydrogenase
JRY14_28000	COG1686	Belongs to the peptidase S11 family
JRY14_28015	COG0011	TIGRFAM Protein of
JRY14_28020	COG0840	transmembrane signaling receptor activity
JRY14_28035	COG2814	Major facilitator Superfamily
JRY14_28040	COG0531	amino acid
JRY14_28065	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
JRY14_28100	COG0586	Pfam SNARE associated Golgi protein
JRY14_28110	COG1376	ErfK ybiS ycfS ynhG family protein
JRY14_28115	COG0745	RESPONSE REGULATOR receiver
JRY14_28120	COG5002	protein histidine kinase activity
JRY14_28170	COG0840	transmembrane signaling receptor activity
JRY14_28175	COG2151	metal-sulfur cluster biosynthetic enzyme
JRY14_28180	COG3227	Zinc metalloprotease (Elastase)
JRY14_28200	COG0586	Pfam SNARE associated Golgi protein
JRY14_28205	COG0475	glutathione-regulated potassium exporter activity
JRY14_28210	COG0490	domain, Protein
JRY14_28215	COG1115	amino acid carrier protein
JRY14_28220	COG0783	Belongs to the Dps family
JRY14_28235	COG1611	Belongs to the LOG family
JRY14_28245	COG1528	Iron-storage protein
JRY14_28255	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JRY14_28260	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JRY14_28265	COG1115	amino acid carrier protein
JRY14_28270	COG1115	amino acid carrier protein
JRY14_28275	COG2910	NAD(P)H-binding
JRY14_28290	COG0656	L-ascorbic acid biosynthetic process
JRY14_28295	COG2814	Major facilitator Superfamily
JRY14_28300	COG1733	regulation of RNA biosynthetic process
JRY14_28310	COG1252	NADH dehydrogenase
JRY14_28360	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
JRY14_28375	COG1335	isochorismatase
JRY14_28380	COG1522	sequence-specific DNA binding
JRY14_28445	COG0557	exoribonuclease II activity
JRY14_28450	COG3547	Transposase (IS116 IS110 IS902 family)
JRY14_28475	COG1674	ftsk spoiiie
JRY14_28500	COG4824	toxin secretion phage lysis holin
JRY14_28510	COG3547	Transposase (IS116 IS110 IS902 family)
JRY14_28585	COG5484	DNA packaging
JRY14_28610	COG0582	viral genome integration into host DNA
JRY14_28710	COG3646	Phage regulatory protein
JRY14_28730	COG1396	sequence-specific DNA binding
JRY14_28740	COG0582	viral genome integration into host DNA
JRY14_28745	COG1647	Serine aminopeptidase, S33
JRY14_28750	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
JRY14_28755	COG1346	cytolysis
JRY14_28790	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
JRY14_28805	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
JRY14_28830	COG5632	N-Acetylmuramoyl-L-alanine amidase
JRY14_28830	COG3409	Peptidoglycan-binding domain 1 protein
JRY14_28830	COG1388	LysM domain
JRY14_28835	COG4824	toxin secretion phage lysis holin
JRY14_28910	COG3547	Transposase (IS116 IS110 IS902 family)
JRY14_28970	COG1595	DNA-templated transcription, initiation
JRY14_28980	COG3331	DNA recombination
JRY14_29085	COG3646	Phage regulatory protein
JRY14_29115	COG0582	viral genome integration into host DNA
JRY14_29170	COG0582	viral genome integration into host DNA
JRY14_29175	COG1555	photosystem II stabilization
JRY14_29175	COG1596	polysaccharide export
JRY14_29205	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
JRY14_29220	COG2323	membrane
JRY14_29230	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
JRY14_29240	COG0391	Required for morphogenesis under gluconeogenic growth conditions
JRY14_29250	COG1051	belongs to the nudix hydrolase family
JRY14_29260	COG0492	ferredoxin-NADP+ reductase activity
JRY14_29265	COG0457	Tetratricopeptide repeat
JRY14_29270	COG0110	maltose O-acetyltransferase activity
JRY14_29290	COG1950	PFAM Membrane protein of
JRY14_29300	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
JRY14_29305	COG0556	nucleotide-excision repair
JRY14_29320	COG0789	Transcriptional regulator
JRY14_29340	COG0583	DNA-binding transcription factor activity
JRY14_29350	COG0655	NAD(P)H dehydrogenase (quinone) activity
JRY14_29355	COG0488	(ABC) transporter
JRY14_29365	COG1132	(ABC) transporter
JRY14_29370	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JRY14_29375	COG3409	Peptidoglycan-binding domain 1 protein
JRY14_29375	COG0793	Belongs to the peptidase S41A family
JRY14_29380	COG2177	Part of the ABC transporter FtsEX involved in
JRY14_29385	COG2884	Cell division ATP-binding protein ftsE
JRY14_29405	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
JRY14_29410	COG1278	Cold shock
JRY14_29415	COG1040	competence protein
JRY14_29420	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
JRY14_29425	COG3103	Sh3 type 3 domain protein
JRY14_29425	COG0791	NLP P60 protein
JRY14_29425	COG1388	LysM domain
JRY14_29430	COG1733	regulation of RNA biosynthetic process
JRY14_29435	COG1307	EDD domain protein, DegV family
JRY14_29440	COG1739	Uncharacterized protein family UPF0029
JRY14_29445	COG1316	TRANSCRIPTIONal
JRY14_29450	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
JRY14_29455	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
JRY14_29460	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
JRY14_29470	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
JRY14_29470	COG3933	PFAM sigma-54 factor interaction domain-containing protein
JRY14_29490	COG1486	melibiose metabolic process
JRY14_29495	COG1447	Phosphotransferase system cellobiose-specific component IIA
JRY14_29500	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JRY14_29520	COG1447	Phosphotransferase system cellobiose-specific component IIA
JRY14_29530	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
JRY14_29535	COG1301	dicarboxylic acid transport
JRY14_29550	COG1511	domain protein
JRY14_29555	COG0583	DNA-binding transcription factor activity
JRY14_29560	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
JRY14_29570	COG1271	oxidase subunit
JRY14_29575	COG1294	oxidase, subunit
JRY14_29580	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
JRY14_29590	COG1620	l-lactate permease
JRY14_29600	COG2389	metal-binding protein
JRY14_29610	COG1368	sulfuric ester hydrolase activity
JRY14_29635	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
JRY14_29660	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
JRY14_29665	COG1388	LysM domain
JRY14_29665	COG3584	3D domain protein
JRY14_29700	COG4715	Zinc finger, swim domain protein
JRY14_29705	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
JRY14_29715	COG3547	Transposase (IS116 IS110 IS902 family)
JRY14_29750	COG0577	efflux transmembrane transporter activity
JRY14_29755	COG1136	(ABC) transporter
JRY14_29790	COG5002	protein histidine kinase activity
JRY14_29795	COG0745	RESPONSE REGULATOR receiver
JRY14_29800	COG1482	cell wall glycoprotein biosynthetic process
JRY14_29805	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JRY14_29805	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JRY14_29805	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
JRY14_29810	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
JRY14_29810	COG3711	transcriptional antiterminator
JRY14_29815	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
JRY14_29830	COG1482	cell wall glycoprotein biosynthetic process
JRY14_29835	COG0836	Belongs to the mannose-6-phosphate isomerase type 2 family
JRY14_29835	COG0662	Cupin 2, conserved barrel domain protein
JRY14_29850	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
JRY14_29855	COG1091	dTDP-4-dehydrorhamnose reductase activity
JRY14_29870	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
JRY14_29895	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
JRY14_29900	COG1210	Utp--glucose-1-phosphate uridylyltransferase
JRY14_29905	COG4464	protein tyrosine phosphatase activity
JRY14_29910	COG0489	protein tyrosine kinase activity
JRY14_29915	COG3944	biosynthesis protein
JRY14_29920	COG0489	protein tyrosine kinase activity
JRY14_29935	COG1609	Transcriptional regulator
JRY14_29945	COG0739	heme binding
JRY14_29960	COG3279	Response regulator of the LytR AlgR family
JRY14_29965	COG2385	sporulation resulting in formation of a cellular spore
JRY14_29980	COG4836	Membrane
JRY14_29985	COG1007	ATP synthesis coupled electron transport
JRY14_29990	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JRY14_29995	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
JRY14_30005	COG0839	Belongs to the complex I subunit 6 family
JRY14_30025	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
JRY14_30040	COG3300	MHYT domain
JRY14_30040	COG5001	Diguanylate cyclase
JRY14_30090	COG0356	it plays a direct role in the translocation of protons across the membrane
JRY14_30125	COG0698	ribose 5-phosphate isomerase
JRY14_30140	COG2259	Doxx family
JRY14_30145	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
JRY14_30160	COG0009	L-threonylcarbamoyladenylate synthase
JRY14_30195	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
JRY14_30200	COG1494	fructose-1,6-bisphosphatase
JRY14_30220	COG4821	SIS domain
JRY14_30230	COG3343	RNA polymerase activity
JRY14_30240	COG1960	acyl-CoA dehydrogenase activity
JRY14_30245	COG1960	acyl-CoA dehydrogenase activity
JRY14_30250	COG1250	3-hydroxyacyl-CoA dehydrogenase
JRY14_30255	COG0183	Belongs to the thiolase family
JRY14_30260	COG2181	nitrate reductase activity
JRY14_30260	COG0247	lactate metabolic process
JRY14_30265	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
JRY14_30280	COG5001	Diguanylate cyclase
JRY14_30280	COG3300	MHYT domain
JRY14_30295	COG3227	Zinc metalloprotease (Elastase)
JRY14_30300	COG2197	response regulator
JRY14_30305	COG4585	Histidine kinase
JRY14_30310	COG0842	Transport permease protein
JRY14_30315	COG1131	(ABC) transporter
JRY14_30320	COG0024	Methionine aminopeptidase
JRY14_30330	COG2234	aminopeptidase activity
JRY14_30345	COG1595	DNA-templated transcription, initiation
JRY14_30355	COG4506	Protein conserved in bacteria
JRY14_30360	COG1619	proteins homologs of microcin C7 resistance protein MccF
JRY14_30385	COG2814	Major facilitator Superfamily
JRY14_30390	COG0789	Transcriptional regulator
JRY14_30395	COG0584	glycerophosphoryl diester phosphodiesterase
JRY14_30400	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
JRY14_30410	COG1994	Peptidase M50
JRY14_30420	COG1078	dGTPase activity
JRY14_30425	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
JRY14_30430	COG1120	ATPase activity
JRY14_30435	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JRY14_30440	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
JRY14_30460	COG0280	phosphate acetyltransferase
JRY14_30475	COG3773	Cell wall hydrolase
JRY14_30500	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
JRY14_30505	COG2233	PERMEase
JRY14_30510	COG0561	phosphatase activity
JRY14_30515	COG2814	Major facilitator Superfamily
JRY14_30525	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
JRY14_30530	COG1131	(ABC) transporter
JRY14_30535	COG2755	lipolytic protein G-D-S-L family
JRY14_30540	COG1609	Transcriptional regulator
JRY14_30550	COG0460	homoserine dehydrogenase
JRY14_30560	COG2873	o-acetylhomoserine
JRY14_30570	COG1011	Hydrolase
JRY14_30575	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
JRY14_30585	COG2197	response regulator
JRY14_30590	COG4585	Histidine kinase
JRY14_30590	COG2203	Gaf domain
JRY14_30595	COG0351	phosphomethylpyrimidine kinase
JRY14_30600	COG3706	GGDEF domain
JRY14_30605	COG2879	small protein
JRY14_30610	COG1966	Carbon starvation protein
JRY14_30615	COG3279	Response regulator of the LytR AlgR family
JRY14_30620	COG0477	Major facilitator Superfamily
JRY14_30625	COG1922	lipopolysaccharide N-acetylmannosaminouronosyltransferase activity
JRY14_30630	COG0438	transferase activity, transferring glycosyl groups
JRY14_30645	COG0840	transmembrane signaling receptor activity
JRY14_30655	COG1607	acyl-coa hydrolase
JRY14_30660	COG1216	Glycosyl transferase, family 2
JRY14_30670	COG1216	Glycosyl transferase, family 2
JRY14_30680	COG4485	Bacterial membrane protein, YfhO
JRY14_30685	COG0463	Glycosyl transferase, family 2
JRY14_30690	COG0488	(ABC) transporter
JRY14_30695	COG1309	transcriptional regulator
JRY14_30700	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
JRY14_30705	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JRY14_30705	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
JRY14_30710	COG0628	permease
JRY14_30730	COG3275	phosphorelay sensor kinase activity
JRY14_30735	COG2814	Major facilitator Superfamily
JRY14_30740	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
JRY14_30745	COG4362	Belongs to the NOS family. Bacterial NOS oxygenase subfamily
JRY14_30765	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
JRY14_30770	COG1272	protein, Hemolysin III
JRY14_30790	COG1164	Oligoendopeptidase f
JRY14_30810	COG2801	Transposase and inactivated derivatives
JRY14_30825	COG5002	protein histidine kinase activity
JRY14_30840	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
JRY14_30845	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
JRY14_30850	COG4853	Protein conserved in bacteria
JRY14_30860	COG5002	protein histidine kinase activity
JRY14_30865	COG0745	RESPONSE REGULATOR receiver
JRY14_30895	COG0305	Participates in initiation and elongation during chromosome replication
JRY14_30905	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
JRY14_30910	COG4241	membrane
JRY14_30930	COG0012	GTP binding
JRY14_30935	COG4481	Protein conserved in bacteria
JRY14_30940	COG0668	transmembrane transport
JRY14_30950	COG1475	DNA binding
JRY14_30955	COG1192	Involved in chromosome partitioning
JRY14_30980	COG1847	R3H domain protein
JRY14_30995	COG0230	Belongs to the bacterial ribosomal protein bL34 family