locus-tag	class	description
FOC88_00095	COG5484	DNA packaging
FOC88_00115	COG5518	Phage portal protein
FOC88_00120	COG2369	cell adhesion
FOC88_00125	COG0338	D12 class N6 adenine-specific DNA methyltransferase
FOC88_00130	COG4653	Phage capsid family
FOC88_00230	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
FOC88_00255	COG2329	Antibiotic biosynthesis monooxygenase
FOC88_00275	COG1192	Involved in chromosome partitioning
FOC88_00355	COG1396	sequence-specific DNA binding
FOC88_00405	COG1484	DNA-dependent DNA replication
FOC88_00460	COG1215	transferase activity, transferring glycosyl groups
FOC88_00470	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
FOC88_00475	COG1388	LysM domain
FOC88_00475	COG0791	NLP P60 protein
FOC88_00485	COG1368	sulfuric ester hydrolase activity
FOC88_00495	COG2389	metal-binding protein
FOC88_00505	COG1620	l-lactate permease
FOC88_00515	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
FOC88_00520	COG1294	oxidase, subunit
FOC88_00525	COG1271	oxidase subunit
FOC88_00535	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
FOC88_00540	COG0583	DNA-binding transcription factor activity
FOC88_00545	COG1511	domain protein
FOC88_00550	COG0346	lactoylglutathione lyase activity
FOC88_00560	COG1301	dicarboxylic acid transport
FOC88_00565	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
FOC88_00575	COG1447	Phosphotransferase system cellobiose-specific component IIA
FOC88_00580	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
FOC88_00585	COG4262	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
FOC88_00595	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
FOC88_00600	COG1447	Phosphotransferase system cellobiose-specific component IIA
FOC88_00605	COG1486	melibiose metabolic process
FOC88_00625	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
FOC88_00625	COG3933	PFAM sigma-54 factor interaction domain-containing protein
FOC88_00635	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
FOC88_00640	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
FOC88_00645	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
FOC88_00650	COG1316	TRANSCRIPTIONal
FOC88_00655	COG1739	Uncharacterized protein family UPF0029
FOC88_00660	COG1307	EDD domain protein, DegV family
FOC88_00665	COG1733	regulation of RNA biosynthetic process
FOC88_00670	COG1388	LysM domain
FOC88_00670	COG0791	NLP P60 protein
FOC88_00675	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
FOC88_00680	COG1040	competence protein
FOC88_00685	COG1278	Cold shock
FOC88_00690	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
FOC88_00710	COG2884	Cell division ATP-binding protein ftsE
FOC88_00715	COG2177	Part of the ABC transporter FtsEX involved in
FOC88_00720	COG0793	Belongs to the peptidase S41A family
FOC88_00720	COG3409	Peptidoglycan-binding domain 1 protein
FOC88_00725	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
FOC88_00730	COG1132	(ABC) transporter
FOC88_00745	COG0655	NAD(P)H dehydrogenase (quinone) activity
FOC88_00755	COG0583	DNA-binding transcription factor activity
FOC88_00760	COG2855	membrane
FOC88_00790	COG0789	Transcriptional regulator
FOC88_00810	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
FOC88_00820	COG1950	PFAM Membrane protein of
FOC88_00840	COG0110	maltose O-acetyltransferase activity
FOC88_00845	COG0457	Tetratricopeptide repeat
FOC88_00850	COG0492	ferredoxin-NADP+ reductase activity
FOC88_00860	COG1051	belongs to the nudix hydrolase family
FOC88_00870	COG0391	Required for morphogenesis under gluconeogenic growth conditions
FOC88_00880	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
FOC88_00890	COG2323	membrane
FOC88_00905	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
FOC88_00930	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
FOC88_00945	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
FOC88_00980	COG1346	cytolysis
FOC88_00985	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
FOC88_00990	COG1647	Serine aminopeptidase, S33
FOC88_00995	COG0557	exoribonuclease II activity
FOC88_01055	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FOC88_01085	COG0840	transmembrane signaling receptor activity
FOC88_01085	COG3290	protein histidine kinase activity
FOC88_01110	COG0812	UDP-N-acetylmuramate dehydrogenase activity
FOC88_01115	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
FOC88_01120	COG1252	NADH dehydrogenase
FOC88_01130	COG1733	regulation of RNA biosynthetic process
FOC88_01135	COG2814	Major facilitator Superfamily
FOC88_01140	COG0656	L-ascorbic acid biosynthetic process
FOC88_01160	COG2910	NAD(P)H-binding
FOC88_01165	COG1115	amino acid carrier protein
FOC88_01170	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
FOC88_01175	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
FOC88_01195	COG1611	Belongs to the LOG family
FOC88_01210	COG0783	Belongs to the Dps family
FOC88_01215	COG1115	amino acid carrier protein
FOC88_01220	COG0490	domain, Protein
FOC88_01225	COG0475	glutathione-regulated potassium exporter activity
FOC88_01240	COG1741	Belongs to the pirin family
FOC88_01245	COG3227	Zinc metalloprotease (Elastase)
FOC88_01250	COG2151	metal-sulfur cluster biosynthetic enzyme
FOC88_01255	COG0840	transmembrane signaling receptor activity
FOC88_01280	COG5002	protein histidine kinase activity
FOC88_01285	COG0745	RESPONSE REGULATOR receiver
FOC88_01290	COG1376	ErfK ybiS ycfS ynhG family protein
FOC88_01300	COG0586	Pfam SNARE associated Golgi protein
FOC88_01335	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
FOC88_01345	COG0706	membrane insertase activity
FOC88_01355	COG0531	amino acid
FOC88_01360	COG2814	Major facilitator Superfamily
FOC88_01380	COG0840	transmembrane signaling receptor activity
FOC88_01385	COG0011	TIGRFAM Protein of
FOC88_01400	COG1686	Belongs to the peptidase S11 family
FOC88_01410	COG1250	3-hydroxyacyl-CoA dehydrogenase
FOC88_01410	COG1024	Enoyl-CoA hydratase
FOC88_01415	COG0183	Belongs to the thiolase family
FOC88_01425	COG1960	acyl-CoA dehydrogenase activity
FOC88_01430	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FOC88_01435	COG1309	transcriptional regulator
FOC88_01440	COG1396	sequence-specific DNA binding
FOC88_01510	COG1393	Belongs to the ArsC family
FOC88_01520	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
FOC88_01525	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FOC88_01540	COG2011	ABC-type metal ion transport system permease component
FOC88_01545	COG1464	Belongs to the NlpA lipoprotein family
FOC88_01550	COG1464	Belongs to the NlpA lipoprotein family
FOC88_01555	COG0396	ATPase activity
FOC88_01560	COG0719	Fe-S assembly protein
FOC88_01565	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
FOC88_01570	COG0822	iron-sulfur transferase activity
FOC88_01575	COG0719	Fe-S assembly protein
FOC88_01580	COG0737	Belongs to the 5'-nucleotidase family
FOC88_01585	COG3377	Domain of unknown function (DUF1805)
FOC88_01595	COG0739	heme binding
FOC88_01620	COG4377	Putative membrane peptidase family (DUF2324)
FOC88_01625	COG0789	Transcriptional regulator
FOC88_01635	COG4470	Protein conserved in bacteria
FOC88_01650	COG1494	fructose-1,6-bisphosphatase
FOC88_01655	COG2445	Protein of unknown function DUF86
FOC88_01665	COG0647	UMP catabolic process
FOC88_01675	COG2249	NAD(P)H dehydrogenase (quinone) activity
FOC88_01685	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
FOC88_01690	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
FOC88_01700	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
FOC88_01705	COG4837	Protein of unknown function (DUF1462)
FOC88_01725	COG2824	Alkylphosphonate utilization operon protein PhnA
FOC88_01730	COG0390	transport system, permease component
FOC88_01745	COG1252	NADH dehydrogenase
FOC88_01760	COG0316	Belongs to the HesB IscA family
FOC88_01770	COG1683	Conserved Protein
FOC88_01800	COG1252	NADH dehydrogenase
FOC88_01820	COG3584	3D domain protein
FOC88_01835	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
FOC88_01840	COG1210	Utp--glucose-1-phosphate uridylyltransferase
FOC88_01850	COG1268	BioY protein
FOC88_01860	COG2050	protein possibly involved in aromatic compounds catabolism
FOC88_01880	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
FOC88_01885	COG5018	Exonuclease
FOC88_01905	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
FOC88_01915	COG2267	carboxylic ester hydrolase activity
FOC88_01920	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
FOC88_01925	COG1522	sequence-specific DNA binding
FOC88_01930	COG0436	Aminotransferase
FOC88_01935	COG1098	S1 RNA binding domain
FOC88_01940	COG2155	Conserved Protein
FOC88_01955	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
FOC88_01960	COG1285	pathogenesis
FOC88_01995	COG0544	peptidyl-prolyl cis-trans isomerase activity
FOC88_02090	COG1595	DNA-templated transcription, initiation
FOC88_02125	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
FOC88_02135	COG0058	SHG alpha-glucan phosphorylase activity
FOC88_02155	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
FOC88_02160	COG1575	Belongs to the MenA family. Type 1 subfamily
FOC88_02165	COG1169	isochorismate synthase
FOC88_02170	COG1165	Catalyzes the thiamine diphosphate-dependent decarboxylation of 2-oxoglutarate and the subsequent addition of the resulting succinic semialdehyde-thiamine pyrophosphate anion to isochorismate to yield 2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate (SEPHCHC)
FOC88_02175	COG0596	Alpha beta hydrolase
FOC88_02180	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
FOC88_02190	COG4948	Mandelate Racemase Muconate Lactonizing
FOC88_02220	COG3964	amidohydrolase
FOC88_02240	COG2188	Transcriptional regulator
FOC88_02255	COG0577	efflux transmembrane transporter activity
FOC88_02260	COG1136	(ABC) transporter
FOC88_02265	COG0577	efflux transmembrane transporter activity
FOC88_02270	COG0577	efflux transmembrane transporter activity
FOC88_02275	COG2205	protein histidine kinase activity
FOC88_02280	COG0745	RESPONSE REGULATOR receiver
FOC88_02285	COG2207	Transcriptional regulator
FOC88_02285	COG3708	Transcriptional regulator
FOC88_02290	COG1136	(ABC) transporter
FOC88_02295	COG0577	efflux transmembrane transporter activity
FOC88_02305	COG0586	Pfam SNARE associated Golgi protein
FOC88_02330	COG1597	lipid kinase activity
FOC88_02360	COG0745	RESPONSE REGULATOR receiver
FOC88_02365	COG5002	protein histidine kinase activity
FOC88_02395	COG1842	Phage shock protein A
FOC88_02420	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
FOC88_02440	COG1294	oxidase, subunit
FOC88_02445	COG1271	oxidase subunit
FOC88_02450	COG0288	reversible hydration of carbon dioxide
FOC88_02485	COG0494	nUDIX hydrolase
FOC88_02510	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FOC88_02515	COG1116	anion transmembrane transporter activity
FOC88_02520	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
FOC88_02535	COG1368	sulfuric ester hydrolase activity
FOC88_02540	COG2267	carboxylic ester hydrolase activity
FOC88_02545	COG4191	Histidine kinase
FOC88_02550	COG5002	protein histidine kinase activity
FOC88_02555	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
FOC88_02610	COG0521	Mo-molybdopterin cofactor biosynthetic process
FOC88_02620	COG0438	transferase activity, transferring glycosyl groups
FOC88_02625	COG0671	phosphoesterase, PA-phosphatase related
FOC88_02630	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
FOC88_02635	COG2267	carboxylic ester hydrolase activity
FOC88_02655	COG1794	racemase activity, acting on amino acids and derivatives
FOC88_02670	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
FOC88_02675	COG1242	4 iron, 4 sulfur cluster binding
FOC88_02695	COG1136	(ABC) transporter
FOC88_02705	COG0582	viral genome integration into host DNA
FOC88_02710	COG0490	domain, Protein
FOC88_02715	COG0475	glutathione-regulated potassium exporter activity
FOC88_02720	COG2814	Major facilitator Superfamily
FOC88_02760	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
FOC88_02770	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
FOC88_02790	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
FOC88_02795	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
FOC88_02805	COG0303	'Molybdopterin
FOC88_02810	COG1763	Mo-molybdopterin cofactor biosynthetic process
FOC88_02815	COG0314	molybdopterin synthase activity
FOC88_02840	COG1329	Transcriptional regulator
FOC88_02860	COG3832	glyoxalase III activity
FOC88_02870	COG2814	Major facilitator Superfamily
FOC88_02875	COG2081	HI0933 family
FOC88_02880	COG2244	polysaccharide biosynthetic process
FOC88_02885	COG1187	pseudouridine synthase activity
FOC88_02890	COG1349	DNA-binding transcription factor activity
FOC88_02895	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
FOC88_02905	COG1523	belongs to the glycosyl hydrolase 13 family
FOC88_02910	COG0510	thiamine kinase activity
FOC88_02925	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FOC88_02935	COG1363	Peptidase, m42
FOC88_02940	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
FOC88_02945	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FOC88_02955	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FOC88_02965	COG1674	ftsk spoiiie
FOC88_02985	COG1695	Transcriptional regulator
FOC88_02990	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FOC88_03015	COG2309	aminopeptidase activity
FOC88_03025	COG3118	belongs to the thioredoxin family
FOC88_03030	COG4851	CamS sex pheromone cAM373 precursor
FOC88_03035	COG1609	Transcriptional regulator
FOC88_03070	COG0666	response to abiotic stimulus
FOC88_03080	COG0745	RESPONSE REGULATOR receiver
FOC88_03090	COG2267	carboxylic ester hydrolase activity
FOC88_03095	COG0123	including yeast histone deacetylase and acetoin utilization protein
FOC88_03100	COG0517	IMP dehydrogenase activity
FOC88_03105	COG0454	-acetyltransferase
FOC88_03110	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FOC88_03120	COG1595	DNA-templated transcription, initiation
FOC88_03155	COG1956	GAF domain-containing protein
FOC88_03160	COG1309	transcriptional regulator
FOC88_03165	COG0697	spore germination
FOC88_03170	COG0583	DNA-binding transcription factor activity
FOC88_03180	COG1104	cysteine desulfurase activity
FOC88_03195	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FOC88_03205	COG1574	metal-dependent hydrolase with the TIM-barrel fold
FOC88_03220	COG3874	Sporulation protein YtfJ
FOC88_03225	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
FOC88_03230	COG0827	DNA restriction-modification system
FOC88_03255	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
FOC88_03295	COG0589	response to stress
FOC88_03300	COG1028	Short-chain dehydrogenase reductase Sdr
FOC88_03315	COG1476	TRANSCRIPTIONal
FOC88_03325	COG0662	Cupin 2, conserved barrel domain protein
FOC88_03370	COG0006	proline dipeptidase activity
FOC88_03385	COG4109	DRTGG domain
FOC88_03395	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
FOC88_03410	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
FOC88_03425	COG0587	DNA-directed DNA polymerase activity
FOC88_03430	COG0281	malic enzyme
FOC88_03435	COG1725	Transcriptional regulator
FOC88_03460	COG3030	protein affecting phage T7 exclusion by the F plasmid
FOC88_03465	COG0628	permease
FOC88_03475	COG0372	Belongs to the citrate synthase family
FOC88_03480	COG0538	isocitrate dehydrogenase activity
FOC88_03500	COG0745	RESPONSE REGULATOR receiver
FOC88_03505	COG5002	protein histidine kinase activity
FOC88_03510	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
FOC88_03510	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
FOC88_03520	COG1971	Probably functions as a manganese efflux pump
FOC88_03525	COG0237	dephospho-CoA kinase activity
FOC88_03530	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
FOC88_03535	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
FOC88_03545	COG3611	Membrane attachment protein
FOC88_03550	COG1484	DNA-dependent DNA replication
FOC88_03560	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
FOC88_03585	COG1363	Peptidase, m42
FOC88_03590	COG1309	transcriptional regulator
FOC88_03595	COG1566	PFAM secretion protein HlyD family protein
FOC88_03600	COG2814	Major facilitator Superfamily
FOC88_03625	COG1418	mRNA catabolic process
FOC88_03635	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
FOC88_03680	COG1286	toxin biosynthetic process
FOC88_03685	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
FOC88_03685	COG1796	DNA polymerase
FOC88_03695	COG1187	pseudouridine synthase activity
FOC88_03700	COG1114	Component of the transport system for branched-chain amino acids
FOC88_03705	COG5386	Cell surface protein
FOC88_03710	COG5386	Cell surface protein
FOC88_03725	COG1120	ATPase activity
FOC88_03730	COG4509	Sortase family
FOC88_03745	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
FOC88_03750	COG4895	conserved protein (DUF2196)
FOC88_03760	COG0745	RESPONSE REGULATOR receiver
FOC88_03765	COG2205	protein histidine kinase activity
FOC88_03770	COG1131	(ABC) transporter
FOC88_03795	COG2318	DinB family
FOC88_03815	COG0318	PFAM AMP-dependent synthetase and ligase
FOC88_03820	COG1309	transcriptional regulator
FOC88_03825	COG1024	Enoyl-CoA hydratase
FOC88_03830	COG2086	electron transfer activity
FOC88_03835	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
FOC88_03840	COG3118	belongs to the thioredoxin family
FOC88_03850	COG1719	4-vinyl reductase, 4VR
FOC88_03855	COG2009	succinate dehydrogenase
FOC88_03860	COG1053	succinate dehydrogenase
FOC88_03865	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
FOC88_03870	COG0824	Thioesterase
FOC88_03875	COG1876	peptidase activity
FOC88_03880	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
FOC88_03885	COG1360	Flagellar Motor Protein
FOC88_03890	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
FOC88_03895	COG4152	abc transporter atp-binding protein
FOC88_03900	COG1668	transmembrane transport
FOC88_03905	COG1959	2 iron, 2 sulfur cluster binding
FOC88_03915	COG0697	spore germination
FOC88_03920	COG1396	sequence-specific DNA binding
FOC88_03925	COG1983	PspC domain protein
FOC88_03945	COG3279	Response regulator of the LytR AlgR family
FOC88_03950	COG3275	phosphorelay sensor kinase activity
FOC88_03955	COG4608	Belongs to the ABC transporter superfamily
FOC88_03960	COG0444	Belongs to the ABC transporter superfamily
FOC88_03980	COG0402	S-adenosylhomocysteine deaminase activity
FOC88_03985	COG0402	S-adenosylhomocysteine deaminase activity
FOC88_03995	COG2233	PERMEase
FOC88_04000	COG2197	response regulator
FOC88_04015	COG1309	transcriptional regulator
FOC88_04035	COG5401	PFAM Sporulation and spore germination
FOC88_04050	COG0622	Phosphoesterase
FOC88_04100	COG0470	DNA polymerase III
FOC88_04100	COG1067	ATP-dependent peptidase activity
FOC88_04115	COG1764	response to oxidative stress
FOC88_04120	COG1846	Transcriptional regulator
FOC88_04130	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
FOC88_04140	COG1587	Uroporphyrinogen-III synthase
FOC88_04145	COG0113	porphobilinogen synthase activity
FOC88_04155	COG1388	LysM domain
FOC88_04165	COG0525	valine-tRNA ligase activity
FOC88_04170	COG0285	dihydrofolate synthase activity
FOC88_04190	COG1077	Cell shape determining protein MreB Mrl
FOC88_04210	COG2894	cell division
FOC88_04215	COG0739	heme binding
FOC88_04220	COG1994	Peptidase M50
FOC88_04225	COG1530	ribonuclease E activity
FOC88_04235	COG2868	ribosomal protein
FOC88_04245	COG3290	protein histidine kinase activity
FOC88_04255	COG0745	RESPONSE REGULATOR receiver
FOC88_04260	COG5002	protein histidine kinase activity
FOC88_04265	COG1136	(ABC) transporter
FOC88_04270	COG0577	efflux transmembrane transporter activity
FOC88_04275	COG0577	efflux transmembrane transporter activity
FOC88_04280	COG0077	Prephenate dehydratase
FOC88_04285	COG2258	MOSC domain
FOC88_04290	COG1827	regulation of RNA biosynthetic process
FOC88_04295	COG1104	cysteine desulfurase activity
FOC88_04300	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
FOC88_04305	COG0157	Belongs to the NadC ModD family
FOC88_04330	COG0640	Transcriptional regulator
FOC88_04335	COG0697	spore germination
FOC88_04345	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
FOC88_04375	COG1862	Preprotein translocase
FOC88_04385	COG2323	membrane
FOC88_04390	COG2244	polysaccharide biosynthetic process
FOC88_04400	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
FOC88_04400	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
FOC88_04405	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
FOC88_04410	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
FOC88_04410	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
FOC88_04420	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
FOC88_04445	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
FOC88_04455	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
FOC88_04460	COG1959	2 iron, 2 sulfur cluster binding
FOC88_04465	COG1104	cysteine desulfurase activity
FOC88_04480	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
FOC88_04500	COG0628	permease
FOC88_04530	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
FOC88_04535	COG4122	O-methyltransferase activity
FOC88_04560	COG0768	penicillin binding
FOC88_04585	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
FOC88_04590	COG0626	cystathionine gamma-synthase activity
FOC88_04595	COG1012	belongs to the aldehyde dehydrogenase family
FOC88_04595	COG1454	alcohol dehydrogenase
FOC88_04605	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
FOC88_04645	COG2259	Doxx family
FOC88_04650	COG2514	catechol 2,3-dioxygenase activity
FOC88_04660	COG3186	Phenylalanine-4-hydroxylase
FOC88_04665	COG1404	Belongs to the peptidase S8 family
FOC88_04700	COG2267	carboxylic ester hydrolase activity
FOC88_04710	COG1785	Belongs to the alkaline phosphatase family
FOC88_04720	COG2357	RelA SpoT domain protein
FOC88_04725	COG0778	Nitroreductase
FOC88_04735	COG1595	DNA-templated transcription, initiation
FOC88_04760	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
FOC88_04765	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
FOC88_04775	COG1534	Rna-binding protein
FOC88_04785	COG1713	HD superfamily hydrolase involved in NAD metabolism
FOC88_04790	COG0799	negative regulation of ribosome biogenesis
FOC88_04795	COG2226	methyltransferase
FOC88_04800	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
FOC88_04805	COG1596	polysaccharide export
FOC88_04805	COG1555	photosystem II stabilization
FOC88_04810	COG2131	deaminase
FOC88_04815	COG2333	competence protein COMEC
FOC88_04815	COG0658	competence protein
FOC88_04825	COG1466	dna polymerase III delta subunit
FOC88_04850	COG1733	regulation of RNA biosynthetic process
FOC88_04855	COG0635	Involved in the biosynthesis of porphyrin-containing compound
FOC88_04885	COG1385	rRNA (uridine-N3-)-methyltransferase activity
FOC88_04890	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
FOC88_04895	COG0828	Belongs to the bacterial ribosomal protein bS21 family
FOC88_04900	COG1610	YqeY-like protein
FOC88_04915	COG1702	phosphate starvation-inducible protein PhoH
FOC88_04920	COG1480	7TM receptor with intracellular HD hydrolase
FOC88_04930	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
FOC88_04935	COG0295	cytidine deaminase activity
FOC88_04940	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
FOC88_04955	COG0517	IMP dehydrogenase activity
FOC88_04970	COG0358	DNA primase activity
FOC88_04975	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
FOC88_04980	COG2010	Cytochrome c
FOC88_04985	COG2384	SAM-dependent methyltransferase
FOC88_04990	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
FOC88_05020	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
FOC88_05025	COG1121	(ABC) transporter
FOC88_05030	COG1108	ABC-type Mn2 Zn2 transport systems permease components
FOC88_05035	COG0735	belongs to the Fur family
FOC88_05060	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
FOC88_05065	COG0477	Major facilitator Superfamily
FOC88_05075	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
FOC88_05080	COG0573	inorganic phosphate transmembrane transporter activity
FOC88_05085	COG0581	inorganic phosphate transmembrane transporter activity
FOC88_05095	COG0704	Plays a role in the regulation of phosphate uptake
FOC88_05100	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
FOC88_05105	COG0267	Belongs to the bacterial ribosomal protein bL33 family
FOC88_05110	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
FOC88_05115	COG4483	Protein conserved in bacteria
FOC88_05120	COG1940	carbohydrate kinase activity
FOC88_05130	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FOC88_05150	COG0626	cystathionine gamma-synthase activity
FOC88_05155	COG0626	cystathionine gamma-synthase activity
FOC88_05160	COG0646	methionine synthase
FOC88_05160	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
FOC88_05165	COG1410	methionine synthase
FOC88_05165	COG0646	methionine synthase
FOC88_05170	COG0707	Cell wall formation. Catalyzes the transfer of a GlcNAc subunit on undecaprenyl-pyrophosphoryl-MurNAc-pentapeptide (lipid intermediate I) to form undecaprenyl-pyrophosphoryl-MurNAc- (pentapeptide)GlcNAc (lipid intermediate II)
FOC88_05215	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
FOC88_05220	COG1459	type II secretion system
FOC88_05230	COG4970	Tfp pilus assembly protein FimT
FOC88_05285	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
FOC88_05315	COG1725	Transcriptional regulator
FOC88_05355	COG2076	Multidrug Resistance protein
FOC88_05360	COG2076	Multidrug Resistance protein
FOC88_05370	COG1609	Transcriptional regulator
FOC88_05375	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
FOC88_05380	COG0095	Lipoate-protein ligase
FOC88_05415	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
FOC88_05425	COG3872	metal-dependent enzyme
FOC88_05440	COG0006	proline dipeptidase activity
FOC88_05465	COG3854	ATPases associated with a variety of cellular activities
FOC88_05510	COG0511	ligase activity, forming carbon-carbon bonds
FOC88_05515	COG0439	Biotin carboxylase
FOC88_05520	COG1302	Protein conserved in bacteria
FOC88_05545	COG0142	geranyltranstransferase activity
FOC88_05555	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
FOC88_05565	COG0497	DNA recombination
FOC88_05570	COG0750	zinc metalloprotease
FOC88_05575	COG0745	RESPONSE REGULATOR receiver
FOC88_05585	COG3093	addiction module antidote protein HigA
FOC88_05590	COG0584	glycerophosphoryl diester phosphodiesterase
FOC88_05600	COG3829	transcription factor binding
FOC88_05600	COG3290	protein histidine kinase activity
FOC88_05605	COG0280	phosphate acetyltransferase
FOC88_05620	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FOC88_05625	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
FOC88_05630	COG0022	dehydrogenase e1 component
FOC88_05635	COG0508	dehydrogenase complex catalyzes the overall conversion of
FOC88_05640	COG0772	Belongs to the SEDS family
FOC88_05645	COG2816	NAD+ diphosphatase activity
FOC88_05660	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FOC88_05665	COG0765	amino acid transport
FOC88_05670	COG1126	abc transporter atp-binding protein
FOC88_05675	COG4129	membrane
FOC88_05680	COG1376	ErfK ybiS ycfS ynhG family protein
FOC88_05695	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FOC88_05700	COG2195	Cleaves the N-terminal amino acid of tripeptides
FOC88_05710	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
FOC88_05730	COG1760	l-serine dehydratase
FOC88_05735	COG1760	l-serine dehydratase
FOC88_05740	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
FOC88_05745	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FOC88_05750	COG0300	oxidoreductase activity
FOC88_05765	COG1364	Catalyzes two activities which are involved in the cyclic version of arginine biosynthesis the synthesis of N- acetylglutamate from glutamate and acetyl-CoA as the acetyl donor, and of ornithine by transacetylation between N(2)-acetylornithine and glutamate
FOC88_05775	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
FOC88_05795	COG1522	sequence-specific DNA binding
FOC88_05805	COG0737	Belongs to the 5'-nucleotidase family
FOC88_05820	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
FOC88_05835	COG1073	alpha beta
FOC88_05835	COG2226	methyltransferase
FOC88_05840	COG4106	trans-aconitate 2-methyltransferase activity
FOC88_05865	COG0307	riboflavin synthase, alpha
FOC88_05870	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
FOC88_05870	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
FOC88_05885	COG1073	alpha beta
FOC88_05890	COG0456	acetyltransferase
FOC88_05895	COG1609	Transcriptional regulator
FOC88_05900	COG2056	Na+-H+ antiporter family
FOC88_05905	COG0596	Alpha beta hydrolase
FOC88_05915	COG4085	toxin activity
FOC88_05915	COG1525	nuclease
FOC88_05915	COG0737	Belongs to the 5'-nucleotidase family
FOC88_05925	COG0456	acetyltransferase
FOC88_05925	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
FOC88_05930	COG0656	L-ascorbic acid biosynthetic process
FOC88_05935	COG0667	Aldo Keto reductase
FOC88_05955	COG1300	Membrane
FOC88_05960	COG0735	belongs to the Fur family
FOC88_05970	COG4974	Belongs to the 'phage' integrase family
FOC88_05995	COG0598	Magnesium transport protein CorA
FOC88_06010	COG1846	Transcriptional regulator
FOC88_06030	COG1131	(ABC) transporter
FOC88_06035	COG1725	Transcriptional regulator
FOC88_06040	COG1686	Belongs to the peptidase S11 family
FOC88_06060	COG0733	neurotransmitter:sodium symporter activity
FOC88_06085	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
FOC88_06100	COG0697	spore germination
FOC88_06105	COG0561	phosphatase activity
FOC88_06110	COG4086	secreted protein
FOC88_06115	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
FOC88_06120	COG0456	acetyltransferase
FOC88_06125	COG1547	Domain of unknown function (DUF309)
FOC88_06150	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
FOC88_06160	COG2188	Transcriptional regulator
FOC88_06170	COG3711	transcriptional antiterminator
FOC88_06175	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FOC88_06175	COG1263	PTS System
FOC88_06175	COG2190	(PTS) system
FOC88_06200	COG0778	Nitroreductase
FOC88_06205	COG3706	GGDEF domain
FOC88_06210	COG2084	Dehydrogenase
FOC88_06245	COG0436	Aminotransferase
FOC88_06250	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
FOC88_06260	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
FOC88_06270	COG1028	Short-chain dehydrogenase reductase Sdr
FOC88_06275	COG1695	Transcriptional regulator
FOC88_06310	COG0183	Belongs to the thiolase family
FOC88_06350	COG3842	ATPase activity
FOC88_06355	COG0366	Alpha amylase catalytic
FOC88_06365	COG2182	Extracellular solute-binding protein
FOC88_06370	COG1175	transmembrane transport
FOC88_06375	COG3833	ABC-type maltose transport systems, permease component
FOC88_06380	COG1609	Transcriptional regulator
FOC88_06385	COG0436	Aminotransferase
FOC88_06395	COG2205	protein histidine kinase activity
FOC88_06405	COG3209	COG3209 Rhs family protein
FOC88_06425	COG2814	Major facilitator Superfamily
FOC88_06460	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
FOC88_06470	COG1408	metallophosphoesterase
FOC88_06475	COG1028	Short-chain dehydrogenase reductase Sdr
FOC88_06480	COG2200	EAL domain
FOC88_06495	COG4703	Protein of unknown function (DUF1797)
FOC88_06505	COG1978	Selenoprotein B, glycine betaine sarcosine D-proline reductase family
FOC88_06515	COG0517	IMP dehydrogenase activity
FOC88_06520	COG0583	DNA-binding transcription factor activity
FOC88_06540	COG0569	domain protein
FOC88_06545	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
FOC88_06555	COG0561	phosphatase activity
FOC88_06560	COG0242	peptide deformylase activity
FOC88_06570	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
FOC88_06575	COG0022	dehydrogenase e1 component
FOC88_06625	COG1982	Orn Lys Arg decarboxylase major
FOC88_06645	COG0483	inositol monophosphate 1-phosphatase activity
FOC88_06670	COG4896	Protein conserved in bacteria
FOC88_06680	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
FOC88_06685	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
FOC88_06695	COG0772	Belongs to the SEDS family
FOC88_06700	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
FOC88_06735	COG3336	cytochrome c oxidase
FOC88_06750	COG2340	Cysteine-rich secretory protein family
FOC88_06765	COG0406	alpha-ribazole phosphatase activity
FOC88_06770	COG3679	Belongs to the UPF0342 family
FOC88_06785	COG0742	ribosomal rna small subunit methyltransferase
FOC88_06795	COG3314	Sporulation integral membrane protein YlbJ
FOC88_06800	COG1752	Esterase of the alpha-beta hydrolase superfamily
FOC88_06805	COG3480	Lon protease (S16) C-terminal proteolytic domain
FOC88_06815	COG1399	metal-binding, possibly nucleic acid-binding protein
FOC88_06820	COG0333	Belongs to the bacterial ribosomal protein bL32 family
FOC88_06835	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
FOC88_06850	COG4839	cell division protein FtsL
FOC88_06860	COG0768	penicillin binding
FOC88_06865	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
FOC88_06880	COG0772	Belongs to the SEDS family
FOC88_06890	COG0812	UDP-N-acetylmuramate dehydrogenase activity
FOC88_06895	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
FOC88_06900	COG0849	cell division
FOC88_06905	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
FOC88_06915	COG1191	sigma factor activity
FOC88_06920	COG1191	sigma factor activity
FOC88_06925	COG1873	PFAM PRC-barrel domain
FOC88_06935	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
FOC88_06945	COG0762	integral membrane protein
FOC88_06950	COG2302	S4 RNA-binding domain
FOC88_06955	COG3599	regulation of cell shape
FOC88_06975	COG0564	pseudouridine synthase activity
FOC88_07035	COG3069	C4-dicarboxylate transmembrane transporter activity
FOC88_07055	COG0006	proline dipeptidase activity
FOC88_07065	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
FOC88_07070	COG1561	YicC-like family, N-terminal region
FOC88_07090	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
FOC88_07095	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
FOC88_07100	COG0242	peptide deformylase activity
FOC88_07110	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
FOC88_07110	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
FOC88_07120	COG0631	protein serine/threonine phosphatase activity
FOC88_07125	COG0515	serine threonine protein kinase
FOC88_07125	COG2815	serine threonine protein kinase
FOC88_07130	COG1162	GTPase activity
FOC88_07135	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
FOC88_07140	COG1564	THIamine pyrophosphokinase
FOC88_07155	COG1302	Protein conserved in bacteria
FOC88_07160	COG1461	Dihydroxyacetone kinase
FOC88_07165	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
FOC88_07180	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
FOC88_07185	COG1028	Short-chain dehydrogenase reductase Sdr
FOC88_07190	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
FOC88_07200	COG1196	nuclear chromosome segregation
FOC88_07205	COG0552	protein localization to endoplasmic reticulum
FOC88_07215	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
FOC88_07225	COG1837	Belongs to the UPF0109 family
FOC88_07265	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
FOC88_07270	COG0758	DNA mediated transformation
FOC88_07275	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
FOC88_07285	COG4974	Belongs to the 'phage' integrase family
FOC88_07315	COG0528	UMP kinase activity
FOC88_07330	COG4589	Belongs to the CDS family
FOC88_07340	COG0750	zinc metalloprotease
FOC88_07360	COG0195	Participates in both transcription termination and antitermination
FOC88_07365	COG2740	Nucleic-acid-binding protein implicated in transcription termination
FOC88_07370	COG1358	cellular component organization or biogenesis
FOC88_07380	COG1550	Protein conserved in bacteria
FOC88_07390	COG0130	Responsible for synthesis of pseudouridine from uracil- 55 in the psi GC loop of transfer RNAs
FOC88_07395	COG0196	riboflavin kinase activity
FOC88_07410	COG0726	polysaccharide deacetylase
FOC88_07415	COG0612	Peptidase, M16
FOC88_07420	COG1873	PFAM PRC-barrel domain
FOC88_07425	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
FOC88_07430	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
FOC88_07435	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
FOC88_07440	COG0527	aspartate kinase activity
FOC88_07450	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
FOC88_07455	COG0740	serine-type endopeptidase activity
FOC88_07465	COG1674	ftsk spoiiie
FOC88_07470	COG2188	Transcriptional regulator
FOC88_07495	COG0612	Peptidase, M16
FOC88_07500	COG0612	Peptidase, M16
FOC88_07505	COG0300	oxidoreductase activity
FOC88_07520	COG1426	Protein conserved in bacteria
FOC88_07525	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
FOC88_07550	COG1692	metallophosphoesterase
FOC88_07555	COG2359	stage V sporulation protein S
FOC88_07565	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
FOC88_07565	COG0674	pyruvate-flavodoxin oxidoreductase activity
FOC88_07570	COG1013	pyruvate-flavodoxin oxidoreductase activity
FOC88_07580	COG4550	Control of competence regulator ComK, YlbF/YmcA
FOC88_07600	COG3049	Linear amide C-N hydrolases, choloylglycine hydrolase family
FOC88_07610	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
FOC88_07615	COG1368	sulfuric ester hydrolase activity
FOC88_07620	COG0562	UDP-galactopyranose mutase
FOC88_07625	COG3773	Cell wall hydrolase
FOC88_07630	COG1404	Belongs to the peptidase S8 family
FOC88_07650	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
FOC88_07655	COG0508	dehydrogenase complex catalyzes the overall conversion of
FOC88_07655	COG0596	Alpha beta hydrolase
FOC88_07660	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FOC88_07665	COG1380	Effector of murein hydrolase LrgA
FOC88_07670	COG1346	cytolysis
FOC88_07685	COG3300	MHYT domain
FOC88_07685	COG5001	Diguanylate cyclase
FOC88_07690	COG0346	lactoylglutathione lyase activity
FOC88_07695	COG2267	carboxylic ester hydrolase activity
FOC88_07710	COG2364	Membrane
FOC88_07720	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
FOC88_07725	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
FOC88_07730	COG2169	Transcriptional regulator
FOC88_07735	COG0708	Exodeoxyribonuclease III
FOC88_07740	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
FOC88_07745	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FOC88_07750	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FOC88_07755	COG1120	ATPase activity
FOC88_07760	COG2819	hydrolase of the alpha beta superfamily
FOC88_07770	COG1937	Protein conserved in bacteria
FOC88_07775	COG2608	mercury ion transmembrane transporter activity
FOC88_07780	COG2217	Heavy metal translocating P-type atpase
FOC88_07795	COG2116	formate transmembrane transporter activity
FOC88_07800	COG1408	metallophosphoesterase
FOC88_07815	COG1113	amino acid transport
FOC88_07825	COG2322	membrane
FOC88_07830	COG1979	alcohol dehydrogenase
FOC88_07835	COG1349	DNA-binding transcription factor activity
FOC88_07840	COG1105	Belongs to the carbohydrate kinase PfkB family
FOC88_07845	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
FOC88_07845	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
FOC88_07845	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
FOC88_07850	COG3584	3D domain protein
FOC88_07850	COG1388	LysM domain
FOC88_07880	COG0464	growth
FOC88_07885	COG2860	membrane
FOC88_07890	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
FOC88_07895	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
FOC88_07900	COG0789	Transcriptional regulator
FOC88_07905	COG0174	glutamine synthetase
FOC88_07925	COG1396	sequence-specific DNA binding
FOC88_08010	COG1351	Catalyzes the reductive methylation of 2'-deoxyuridine- 5'-monophosphate (dUMP) to 2'-deoxythymidine-5'-monophosphate (dTMP) while utilizing 5,10-methylenetetrahydrofolate (mTHF) as the methyl donor, and NAD(P)H and FADH(2) as the reductant
FOC88_08045	COG1595	DNA-templated transcription, initiation
FOC88_08200	COG5632	N-Acetylmuramoyl-L-alanine amidase
FOC88_08240	COG1695	Transcriptional regulator
FOC88_08260	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
FOC88_08270	COG0737	Belongs to the 5'-nucleotidase family
FOC88_08280	COG3638	Part of the ABC transporter complex PhnCDE involved in phosphonates import. Responsible for energy coupling to the transport system
FOC88_08285	COG3639	organic phosphonate transmembrane transporter activity
FOC88_08315	COG1132	(ABC) transporter
FOC88_08320	COG1132	(ABC) transporter
FOC88_08335	COG3409	Peptidoglycan-binding domain 1 protein
FOC88_08335	COG5632	N-Acetylmuramoyl-L-alanine amidase
FOC88_08345	COG0730	response to heat
FOC88_08360	COG1346	cytolysis
FOC88_08370	COG0583	DNA-binding transcription factor activity
FOC88_08380	COG1131	(ABC) transporter
FOC88_08390	COG1473	amidohydrolase
FOC88_08400	COG0785	Cytochrome C biogenesis protein
FOC88_08405	COG4846	Membrane protein involved in cytochrome C biogenesis
FOC88_08465	COG0010	Belongs to the arginase family
FOC88_08470	COG1329	Transcriptional regulator
FOC88_08475	COG1902	pentaerythritol trinitrate reductase activity
FOC88_08480	COG0069	glutamate synthase activity
FOC88_08485	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
FOC88_08490	COG0346	lactoylglutathione lyase activity
FOC88_08495	COG0400	carboxylic ester hydrolase activity
FOC88_08500	COG5002	protein histidine kinase activity
FOC88_08510	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
FOC88_08560	COG0318	PFAM AMP-dependent synthetase and ligase
FOC88_08565	COG1268	BioY protein
FOC88_08570	COG0318	PFAM AMP-dependent synthetase and ligase
FOC88_08575	COG0183	Belongs to the thiolase family
FOC88_08590	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
FOC88_08630	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
FOC88_08635	COG2274	protein secretion by the type I secretion system
FOC88_08645	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FOC88_08675	COG0824	Thioesterase
FOC88_08680	COG4841	protein insertion into membrane
FOC88_08700	COG0745	RESPONSE REGULATOR receiver
FOC88_08705	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
FOC88_08710	COG1832	CoA-binding protein
FOC88_08715	COG0187	DNA topoisomerase II activity
FOC88_08720	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
FOC88_08725	COG0673	inositol 2-dehydrogenase activity
FOC88_08735	COG1131	(ABC) transporter
FOC88_08755	COG1595	DNA-templated transcription, initiation
FOC88_08765	COG1316	TRANSCRIPTIONal
FOC88_08770	COG1301	dicarboxylic acid transport
FOC88_08775	COG4166	transmembrane transport
FOC88_08780	COG4166	transmembrane transport
FOC88_08790	COG4166	transmembrane transport
FOC88_08795	COG2226	methyltransferase
FOC88_08835	COG0697	spore germination
FOC88_08840	COG3383	formate dehydrogenase (NAD+) activity
FOC88_08845	COG2427	Protein of unknown function (DUF1641)
FOC88_08850	COG5609	conserved protein (DUF2294)
FOC88_08855	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
FOC88_08865	COG2116	formate transmembrane transporter activity
FOC88_08870	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
FOC88_08875	COG0303	'Molybdopterin
FOC88_08880	COG0314	molybdopterin synthase activity
FOC88_08890	COG0489	protein tyrosine kinase activity
FOC88_08905	COG3326	Membrane
FOC88_08910	COG2962	Rard protein
FOC88_08915	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
FOC88_08920	COG1657	PFAM Prenyltransferase squalene oxidase
FOC88_08930	COG1028	Short-chain dehydrogenase reductase Sdr
FOC88_08935	COG1012	belongs to the aldehyde dehydrogenase family
FOC88_08945	COG4145	pantothenate transmembrane transporter activity
FOC88_08960	COG0165	Argininosuccinate lyase
FOC88_08970	COG1028	Short-chain dehydrogenase reductase Sdr
FOC88_08990	COG1051	belongs to the nudix hydrolase family
FOC88_09000	COG0716	FMN binding
FOC88_09040	COG2720	vancomycin resistance protein
FOC88_09045	COG2514	catechol 2,3-dioxygenase activity
FOC88_09055	COG1285	pathogenesis
FOC88_09065	COG1024	Enoyl-CoA hydratase
FOC88_09070	COG1216	Glycosyl transferase, family 2
FOC88_09105	COG0277	FAD linked oxidase domain protein
FOC88_09110	COG0385	Bile acid
FOC88_09125	COG2808	Putative FMN-binding domain
FOC88_09135	COG0457	Tetratricopeptide repeat
FOC88_09145	COG0604	alcohol dehydrogenase
FOC88_09150	COG0640	Transcriptional regulator
FOC88_09175	COG0584	glycerophosphoryl diester phosphodiesterase
FOC88_09205	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
FOC88_09210	COG1164	Oligoendopeptidase f
FOC88_09215	COG2162	N-hydroxyarylamine O-acetyltransferase activity
FOC88_09230	COG1193	negative regulation of DNA recombination
FOC88_09250	COG0583	DNA-binding transcription factor activity
FOC88_09285	COG0384	phenazine biosynthesis protein PhzF
FOC88_09290	COG3739	integral membrane protein
FOC88_09295	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FOC88_09300	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FOC88_09305	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
FOC88_09320	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
FOC88_09325	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
FOC88_09355	COG2814	Major facilitator Superfamily
FOC88_09360	COG1113	amino acid transport
FOC88_09365	COG0604	alcohol dehydrogenase
FOC88_09400	COG2072	flavoprotein involved in K transport
FOC88_09440	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FOC88_09450	COG1151	hydroxylamine reductase activity
FOC88_09475	COG3152	Membrane
FOC88_09495	COG1309	transcriptional regulator
FOC88_09510	COG1191	sigma factor activity
FOC88_09530	COG1733	regulation of RNA biosynthetic process
FOC88_09535	COG2249	NAD(P)H dehydrogenase (quinone) activity
FOC88_09540	COG0318	PFAM AMP-dependent synthetase and ligase
FOC88_09550	COG1028	Short-chain dehydrogenase reductase Sdr
FOC88_09560	COG0384	phenazine biosynthesis protein PhzF
FOC88_09580	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FOC88_09600	COG1733	regulation of RNA biosynthetic process
FOC88_09605	COG1733	regulation of RNA biosynthetic process
FOC88_09610	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
FOC88_09615	COG0673	inositol 2-dehydrogenase activity
FOC88_09620	COG2188	Transcriptional regulator
FOC88_09630	COG1393	Belongs to the ArsC family
FOC88_09660	COG0814	amino acid
FOC88_09700	COG1028	Short-chain dehydrogenase reductase Sdr
FOC88_09715	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FOC88_09730	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
FOC88_09740	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
FOC88_09745	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
FOC88_09755	COG1070	Carbohydrate kinase
FOC88_09760	COG2706	6-phosphogluconolactonase activity
FOC88_09765	COG3813	Protein conserved in bacteria
FOC88_09770	COG1357	PFAM Pentapeptide repeats (8 copies)
FOC88_09775	COG0697	spore germination
FOC88_09780	COG0789	Transcriptional regulator
FOC88_09785	COG1253	flavin adenine dinucleotide binding
FOC88_09815	COG0477	Major facilitator Superfamily
FOC88_09825	COG2226	methyltransferase
FOC88_09845	COG0628	permease
FOC88_09865	COG1136	(ABC) transporter
FOC88_09865	COG0577	efflux transmembrane transporter activity
FOC88_09875	COG0110	maltose O-acetyltransferase activity
FOC88_09880	COG0738	Major facilitator superfamily
FOC88_09885	COG1940	carbohydrate kinase activity
FOC88_09890	COG0346	lactoylglutathione lyase activity
FOC88_09925	COG1011	Hydrolase
FOC88_09950	COG1131	(ABC) transporter
FOC88_09960	COG1028	Short-chain dehydrogenase reductase Sdr
FOC88_09980	COG0778	Nitroreductase
FOC88_09985	COG1733	regulation of RNA biosynthetic process
FOC88_10000	COG0124	histidyl-tRNA synthetase
FOC88_10005	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
FOC88_10015	COG3620	sequence-specific DNA binding
FOC88_10025	COG1309	transcriptional regulator
FOC88_10030	COG2814	Major facilitator Superfamily
FOC88_10045	COG1288	antiporter activity
FOC88_10050	COG0684	Catalyzes the aldol cleavage of 4-hydroxy-4-methyl-2- oxoglutarate (HMG) into 2 molecules of pyruvate. Also contains a secondary oxaloacetate (OAA) decarboxylase activity due to the common pyruvate enolate transition state formed following C-C bond cleavage in the retro-aldol and decarboxylation reactions
FOC88_10065	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
FOC88_10100	COG2249	NAD(P)H dehydrogenase (quinone) activity
FOC88_10110	COG2031	fatty acid transporter
FOC88_10120	COG1309	transcriptional regulator
FOC88_10125	COG2076	Multidrug Resistance protein
FOC88_10145	COG1131	(ABC) transporter
FOC88_10150	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
FOC88_10160	COG2814	Major facilitator Superfamily
FOC88_10165	COG1846	Transcriptional regulator
FOC88_10175	COG0477	Major facilitator Superfamily
FOC88_10215	COG5632	N-Acetylmuramoyl-L-alanine amidase
FOC88_10215	COG3409	Peptidoglycan-binding domain 1 protein
FOC88_10235	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
FOC88_10235	COG2207	Transcriptional regulator
FOC88_10240	COG0662	Cupin 2, conserved barrel domain protein
FOC88_10260	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
FOC88_10275	COG0531	amino acid
FOC88_10280	COG1522	sequence-specific DNA binding
FOC88_10285	COG1335	isochorismatase
FOC88_10295	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
FOC88_10300	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
FOC88_10310	COG1760	l-serine dehydratase
FOC88_10315	COG1760	l-serine dehydratase
FOC88_10320	COG0814	amino acid
FOC88_10330	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FOC88_10355	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
FOC88_10375	COG0457	Tetratricopeptide repeat
FOC88_10380	COG1609	Transcriptional regulator
FOC88_10385	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
FOC88_10390	COG0561	phosphatase activity
FOC88_10395	COG0673	inositol 2-dehydrogenase activity
FOC88_10400	COG0738	Major facilitator superfamily
FOC88_10425	COG1619	proteins homologs of microcin C7 resistance protein MccF
FOC88_10435	COG0583	DNA-binding transcription factor activity
FOC88_10445	COG1139	Iron-sulfur cluster binding protein
FOC88_10450	COG1556	Lactate utilization protein
FOC88_10455	COG2271	Major facilitator Superfamily
FOC88_10460	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
FOC88_10470	COG3850	Histidine kinase
FOC88_10470	COG5002	protein histidine kinase activity
FOC88_10485	COG0577	efflux transmembrane transporter activity
FOC88_10490	COG1136	(ABC) transporter
FOC88_10505	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
FOC88_10510	COG0789	Transcriptional regulator
FOC88_10520	COG2309	aminopeptidase activity
FOC88_10535	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
FOC88_10545	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FOC88_10550	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FOC88_10575	COG2515	1-aminocyclopropane-1-carboxylate deaminase
FOC88_10600	COG5002	protein histidine kinase activity
FOC88_10600	COG3850	Histidine kinase
FOC88_10605	COG0745	RESPONSE REGULATOR receiver
FOC88_10630	COG2814	Major facilitator Superfamily
FOC88_10675	COG2169	Transcriptional regulator
FOC88_10695	COG0346	lactoylglutathione lyase activity
FOC88_10710	COG1522	sequence-specific DNA binding
FOC88_10715	COG1028	Short-chain dehydrogenase reductase Sdr
FOC88_10720	COG1309	transcriptional regulator
FOC88_10725	COG3320	Male sterility
FOC88_10725	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
FOC88_10735	COG0456	acetyltransferase
FOC88_10740	COG0745	RESPONSE REGULATOR receiver
FOC88_10745	COG5002	protein histidine kinase activity
FOC88_10765	COG0640	Transcriptional regulator
FOC88_10770	COG0346	lactoylglutathione lyase activity
FOC88_10775	COG0798	PFAM Bile acid sodium symporter
FOC88_10785	COG0572	uridine kinase
FOC88_10805	COG4641	Protein conserved in bacteria
FOC88_10810	COG2267	carboxylic ester hydrolase activity
FOC88_10815	COG1575	Belongs to the MenA family. Type 1 subfamily
FOC88_10830	COG5609	conserved protein (DUF2294)
FOC88_10835	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
FOC88_10845	COG0288	reversible hydration of carbon dioxide
FOC88_10850	COG0415	Belongs to the DNA photolyase family
FOC88_10885	COG0598	Magnesium transport protein CorA
FOC88_10890	COG1846	Transcriptional regulator
FOC88_10895	COG0583	DNA-binding transcription factor activity
FOC88_10915	COG1335	isochorismatase
FOC88_10920	COG2267	carboxylic ester hydrolase activity
FOC88_10925	COG0753	catalase activity
FOC88_10930	COG0737	Belongs to the 5'-nucleotidase family
FOC88_10960	COG1115	amino acid carrier protein
FOC88_10965	COG2066	Belongs to the glutaminase family
FOC88_10970	COG4191	Histidine kinase
FOC88_10975	COG0784	Response regulator, receiver
FOC88_10980	COG0697	spore germination
FOC88_10985	COG0531	amino acid
FOC88_11000	COG0281	malic enzyme
FOC88_11010	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
FOC88_11015	COG1114	Component of the transport system for branched-chain amino acids
FOC88_11020	COG0531	amino acid
FOC88_11025	COG0322	excinuclease ABC activity
FOC88_11040	COG2207	Transcriptional regulator
FOC88_11065	COG5002	protein histidine kinase activity
FOC88_11095	COG1396	sequence-specific DNA binding
FOC88_11100	COG0252	asparaginase activity
FOC88_11105	COG1027	Aspartate ammonia-lyase
FOC88_11115	COG1063	alcohol dehydrogenase
FOC88_11145	COG1113	amino acid transport
FOC88_11150	COG1280	lysine exporter protein (LysE YggA)
FOC88_11155	COG3403	YqcI/YcgG family
FOC88_11160	COG5577	PFAM Coat F domain
FOC88_11175	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FOC88_11180	COG0574	Belongs to the PEP-utilizing enzyme family
FOC88_11180	COG3848	Pyruvate phosphate dikinase
FOC88_11195	COG1633	Catalyzes the formation of the isocyclic ring in chlorophyll biosynthesis. Mediates the cyclase reaction, which results in the formation of divinylprotochlorophyllide (Pchlide) characteristic of all chlorophylls from magnesium-protoporphyrin IX 13-monomethyl ester (MgPMME)
FOC88_11225	COG1960	acyl-CoA dehydrogenase activity
FOC88_11235	COG0640	Transcriptional regulator
FOC88_11240	COG0860	N-Acetylmuramoyl-L-alanine amidase
FOC88_11255	COG1414	Transcriptional regulator
FOC88_11260	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
FOC88_11265	COG1984	allophanate hydrolase subunit 2
FOC88_11340	COG4335	DNA alkylation repair
FOC88_11350	COG0833	amino acid
FOC88_11360	COG0730	response to heat
FOC88_11400	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FOC88_11420	COG0456	acetyltransferase
FOC88_11425	COG2207	Transcriptional regulator
FOC88_11450	COG1136	(ABC) transporter
FOC88_11460	COG1725	Transcriptional regulator
FOC88_11490	COG1574	metal-dependent hydrolase with the TIM-barrel fold
FOC88_11495	COG2814	Major facilitator Superfamily
FOC88_11500	COG2508	Transcriptional regulator
FOC88_11510	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
FOC88_11525	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
FOC88_11530	COG1447	Phosphotransferase system cellobiose-specific component IIA
FOC88_11535	COG2723	6-phospho-beta-galactosidase activity
FOC88_11540	COG1250	3-hydroxyacyl-CoA dehydrogenase
FOC88_11545	COG1024	Enoyl-CoA hydratase
FOC88_11550	COG0183	Belongs to the thiolase family
FOC88_11555	COG0318	PFAM AMP-dependent synthetase and ligase
FOC88_11560	COG0824	Thioesterase
FOC88_11575	COG0179	Fumarylacetoacetate (FAA) hydrolase
FOC88_11595	COG1846	Transcriptional regulator
FOC88_11600	COG0778	Nitroreductase
FOC88_11630	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
FOC88_11640	COG0753	catalase activity
FOC88_11645	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
FOC88_11655	COG0463	Glycosyl transferase, family 2
FOC88_11670	COG0463	Glycosyl transferase, family 2
FOC88_11695	COG0714	Associated with various cellular activities
FOC88_11715	COG0346	lactoylglutathione lyase activity
FOC88_11720	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FOC88_11730	COG3279	Response regulator of the LytR AlgR family
FOC88_11740	COG4377	Putative membrane peptidase family (DUF2324)
FOC88_11755	COG3655	Transcriptional regulator
FOC88_11765	COG1785	Belongs to the alkaline phosphatase family
FOC88_11770	COG3239	Fatty acid desaturase
FOC88_11775	COG1690	Belongs to the RtcB family
FOC88_11780	COG0833	amino acid
FOC88_11785	COG1414	Transcriptional regulator
FOC88_11790	COG4187	Peptidase family M20/M25/M40
FOC88_11795	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
FOC88_11810	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
FOC88_11830	COG2329	Antibiotic biosynthesis monooxygenase
FOC88_11860	COG1070	Carbohydrate kinase
FOC88_11865	COG2390	Transcriptional regulator
FOC88_11875	COG1172	Belongs to the binding-protein-dependent transport system permease family
FOC88_11880	COG1172	Belongs to the binding-protein-dependent transport system permease family
FOC88_11885	COG1879	ABC-type sugar transport system periplasmic component
FOC88_11900	COG3290	protein histidine kinase activity
FOC88_11900	COG3829	transcription factor binding
FOC88_11910	COG1024	Enoyl-CoA hydratase
FOC88_11915	COG2610	gluconate transmembrane transporter activity
FOC88_11925	COG3584	3D domain protein
FOC88_11925	COG1388	LysM domain
FOC88_11960	COG1605	Chorismate mutase
FOC88_11960	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
FOC88_11970	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
FOC88_11975	COG0287	Prephenate dehydrogenase
FOC88_11990	COG1309	transcriptional regulator
FOC88_11995	COG2409	Drug exporters of the RND superfamily
FOC88_11995	COG1033	growth of symbiont in host cell
FOC88_12005	COG0488	(ABC) transporter
FOC88_12010	COG1368	sulfuric ester hydrolase activity
FOC88_12015	COG0861	Integral membrane protein TerC family
FOC88_12035	COG4912	Dna alkylation repair
FOC88_12055	COG2318	DinB family
FOC88_12060	COG0697	spore germination
FOC88_12085	COG2746	aminoglycoside 3-N-acetyltransferase activity
FOC88_12125	COG1116	anion transmembrane transporter activity
FOC88_12130	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
FOC88_12135	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FOC88_12140	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FOC88_12150	COG0628	permease
FOC88_12190	COG1514	Hydrolyzes RNA 2',3'-cyclic phosphodiester to an RNA 2'- phosphomonoester
FOC88_12200	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
FOC88_12205	COG0436	Aminotransferase
FOC88_12245	COG2226	methyltransferase
FOC88_12260	COG2261	transglycosylase associated protein
FOC88_12280	COG0477	Major facilitator Superfamily
FOC88_12280	COG2814	Major facilitator Superfamily
FOC88_12285	COG4533	DNA binding
FOC88_12290	COG0789	Transcriptional regulator
FOC88_12295	COG1664	Polymer-forming cytoskeletal
FOC88_12305	COG2814	Major facilitator Superfamily
FOC88_12325	COG1307	EDD domain protein, DegV family
FOC88_12335	COG1164	Oligoendopeptidase f
FOC88_12365	COG0745	RESPONSE REGULATOR receiver
FOC88_12370	COG5002	protein histidine kinase activity
FOC88_12375	COG2936	dipeptidyl-peptidase activity
FOC88_12420	COG4948	Mandelate Racemase Muconate Lactonizing
FOC88_12430	COG4166	transmembrane transport
FOC88_12435	COG0519	Catalyzes the synthesis of GMP from XMP
FOC88_12440	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
FOC88_12455	COG0586	Pfam SNARE associated Golgi protein
FOC88_12495	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FOC88_12500	COG3938	Belongs to the proline racemase family
FOC88_12510	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
FOC88_12515	COG1012	belongs to the aldehyde dehydrogenase family
FOC88_12520	COG1115	amino acid carrier protein
FOC88_12525	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
FOC88_12540	COG3397	chitin binding
FOC88_12565	COG4637	Psort location Cytoplasmic, score
FOC88_12585	COG0514	ATP-dependent DNA helicase (RecQ)
FOC88_12590	COG2105	PFAM AIG2 family protein
FOC88_12605	COG3973	AAA domain
FOC88_12655	COG0658	competence protein
FOC88_12655	COG2333	competence protein COMEC
FOC88_12680	COG2226	methyltransferase
FOC88_12685	COG2205	protein histidine kinase activity
FOC88_12700	COG1819	glycosyl
FOC88_12705	COG3397	chitin binding
FOC88_12710	COG2153	protein acetylation
FOC88_12740	COG0517	IMP dehydrogenase activity
FOC88_12740	COG4175	Glycine betaine
FOC88_12745	COG4176	ABC-type proline glycine betaine transport system permease component
FOC88_12775	COG0572	uridine kinase
FOC88_12780	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
FOC88_12780	COG0456	acetyltransferase
FOC88_12785	COG1028	Short-chain dehydrogenase reductase Sdr
FOC88_12795	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
FOC88_12800	COG0022	dehydrogenase e1 component
FOC88_12805	COG0508	dehydrogenase complex catalyzes the overall conversion of
FOC88_12810	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
FOC88_12830	COG1349	DNA-binding transcription factor activity
FOC88_12850	COG3284	Transcriptional regulator
FOC88_12870	COG1309	transcriptional regulator
FOC88_12905	COG2959	enzyme of heme biosynthesis
FOC88_12920	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FOC88_12965	COG0697	spore germination
FOC88_12975	COG0201	protein transport
FOC88_12995	COG3227	Zinc metalloprotease (Elastase)
FOC88_13000	COG1523	belongs to the glycosyl hydrolase 13 family
FOC88_13015	COG0076	glutamate decarboxylase activity
FOC88_13055	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FOC88_13095	COG0322	excinuclease ABC activity
FOC88_13110	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
FOC88_13135	COG4667	esterase of the alpha-beta hydrolase superfamily
FOC88_13155	COG3878	Protein conserved in bacteria
FOC88_13180	COG1051	belongs to the nudix hydrolase family
FOC88_13185	COG0592	DNA-directed DNA polymerase activity
FOC88_13205	COG2223	nitrite transmembrane transporter activity
FOC88_13240	COG0697	spore germination
FOC88_13245	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FOC88_13260	COG0584	glycerophosphoryl diester phosphodiesterase
FOC88_13275	COG2814	Major facilitator Superfamily
FOC88_13330	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
FOC88_13345	COG0671	phosphoesterase, PA-phosphatase related
FOC88_13350	COG0604	alcohol dehydrogenase
FOC88_13365	COG2205	protein histidine kinase activity
FOC88_13380	COG1122	ATPase activity
FOC88_13390	COG1794	racemase activity, acting on amino acids and derivatives
FOC88_13395	COG1819	glycosyl
FOC88_13405	COG5002	protein histidine kinase activity
FOC88_13410	COG0561	phosphatase activity
FOC88_13445	COG2124	cytochrome p450
FOC88_13495	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
FOC88_13505	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FOC88_13510	COG0460	homoserine dehydrogenase
FOC88_13530	COG0577	efflux transmembrane transporter activity
FOC88_13535	COG1136	(ABC) transporter
FOC88_13560	COG2205	protein histidine kinase activity
FOC88_13565	COG0745	RESPONSE REGULATOR receiver
FOC88_13575	COG3773	Cell wall hydrolase
FOC88_13590	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
FOC88_13605	COG1063	alcohol dehydrogenase
FOC88_13630	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FOC88_13650	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
FOC88_13665	COG2226	methyltransferase
FOC88_13685	COG0693	protein deglycase activity
FOC88_13720	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
FOC88_13750	COG2207	Transcriptional regulator
FOC88_13775	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
FOC88_13800	COG1686	Belongs to the peptidase S11 family
FOC88_13805	COG2318	DinB family
FOC88_13815	COG0572	uridine kinase
FOC88_13820	COG1247	-acetyltransferase
FOC88_13830	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
FOC88_13835	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
FOC88_13840	COG1024	Enoyl-CoA hydratase
FOC88_13845	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
FOC88_13850	COG0511	ligase activity, forming carbon-carbon bonds
FOC88_13855	COG0439	Biotin carboxylase
FOC88_13860	COG1960	acyl-CoA dehydrogenase activity
FOC88_13875	COG1309	transcriptional regulator
FOC88_13885	COG1131	(ABC) transporter
FOC88_13900	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
FOC88_13940	COG1309	transcriptional regulator
FOC88_13970	COG1876	peptidase activity
FOC88_13985	COG1476	TRANSCRIPTIONal
FOC88_13990	COG0457	Tetratricopeptide repeat
FOC88_14000	COG0737	Belongs to the 5'-nucleotidase family
FOC88_14015	COG3718	enzyme involved in inositol metabolism
FOC88_14020	COG0191	fructose-bisphosphate aldolase activity
FOC88_14045	COG0673	inositol 2-dehydrogenase activity
FOC88_14050	COG2814	Major facilitator Superfamily
FOC88_14055	COG1609	Transcriptional regulator
FOC88_14060	COG2367	Beta-lactamase
FOC88_14080	COG1595	DNA-templated transcription, initiation
FOC88_14095	COG2195	Cleaves the N-terminal amino acid of tripeptides
FOC88_14135	COG1846	Transcriptional regulator
FOC88_14140	COG3961	Belongs to the TPP enzyme family
FOC88_14155	COG0500	methyltransferase
FOC88_14155	COG3615	Tellurite resistance protein tehB
FOC88_14160	COG1136	(ABC) transporter
FOC88_14160	COG0577	efflux transmembrane transporter activity
FOC88_14175	COG1309	transcriptional regulator
FOC88_14205	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FOC88_14240	COG0075	2-aminoethylphosphonate-pyruvate transaminase activity
FOC88_14250	COG2971	BadF BadG BcrA BcrD
FOC88_14275	COG1649	PFAM Uncharacterised BCR, COG1649
FOC88_14300	COG1595	DNA-templated transcription, initiation
FOC88_14305	COG3075	Conversion of glycerol 3-phosphate to dihydroxyacetone. Uses fumarate or nitrate as electron acceptor
FOC88_14315	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
FOC88_14345	COG1396	sequence-specific DNA binding
FOC88_14365	COG1132	(ABC) transporter
FOC88_14370	COG1132	(ABC) transporter
FOC88_14385	COG2258	MOSC domain
FOC88_14390	COG0583	DNA-binding transcription factor activity
FOC88_14405	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
FOC88_14410	COG0583	DNA-binding transcription factor activity
FOC88_14450	COG0561	phosphatase activity
FOC88_14455	COG0010	Belongs to the arginase family
FOC88_14470	COG1278	Cold shock
FOC88_14480	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FOC88_14485	COG2226	methyltransferase
FOC88_14525	COG1247	-acetyltransferase
FOC88_14560	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FOC88_14575	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
FOC88_14625	COG2814	Major facilitator Superfamily
FOC88_14630	COG0596	Alpha beta hydrolase
FOC88_14640	COG1136	(ABC) transporter
FOC88_14645	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
FOC88_14650	COG1187	pseudouridine synthase activity
FOC88_14655	COG2329	Antibiotic biosynthesis monooxygenase
FOC88_14670	COG1115	amino acid carrier protein
FOC88_14680	COG2318	DinB family
FOC88_14690	COG0776	regulation of translation
FOC88_14705	COG2814	Major facilitator Superfamily
FOC88_14710	COG3251	PFAM MbtH domain protein
FOC88_14715	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
FOC88_14720	COG1535	isochorismatase
FOC88_14720	COG3433	isochorismatase activity
FOC88_14725	COG1021	2,3-dihydroxybenzoate-AMP ligase
FOC88_14730	COG1169	isochorismate synthase
FOC88_14735	COG1028	Short-chain dehydrogenase reductase Sdr
FOC88_14740	COG2223	nitrite transmembrane transporter activity
FOC88_14880	COG0582	viral genome integration into host DNA
FOC88_14885	COG0419	ATPase involved in DNA repair
FOC88_14890	COG0420	3'-5' exonuclease activity
FOC88_14905	COG1024	Enoyl-CoA hydratase
FOC88_14910	COG1280	lysine exporter protein (LysE YggA)
FOC88_14920	COG2084	Dehydrogenase
FOC88_14925	COG1960	acyl-CoA dehydrogenase activity
FOC88_14930	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
FOC88_14935	COG2079	MmgE PrpD family protein
FOC88_14940	COG0372	Belongs to the citrate synthase family
FOC88_14945	COG4841	protein insertion into membrane
FOC88_14950	COG2814	Major facilitator Superfamily
FOC88_14955	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
FOC88_14955	COG4499	WXG100 protein secretion system (Wss), protein YukC
FOC88_14995	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
FOC88_15050	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FOC88_15055	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
FOC88_15060	COG0671	phosphoesterase, PA-phosphatase related
FOC88_15065	COG4326	sporulation control protein
FOC88_15105	COG1509	lysine 2,3-aminomutase activity
FOC88_15110	COG3829	transcription factor binding
FOC88_15115	COG0456	acetyltransferase
FOC88_15120	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
FOC88_15125	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
FOC88_15130	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
FOC88_15135	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
FOC88_15150	COG5506	Protein of unknown function (DUF1694)
FOC88_15155	COG1012	belongs to the aldehyde dehydrogenase family
FOC88_15160	COG1253	flavin adenine dinucleotide binding
FOC88_15195	COG1174	glycine betaine transport
FOC88_15200	COG1125	glycine betaine transport
FOC88_15200	COG0517	IMP dehydrogenase activity
FOC88_15260	COG1064	alcohol dehydrogenase
FOC88_15270	COG2197	response regulator
FOC88_15275	COG2203	Gaf domain
FOC88_15275	COG4585	Histidine kinase
FOC88_15280	COG0668	transmembrane transport
FOC88_15285	COG0071	Belongs to the small heat shock protein (HSP20) family
FOC88_15290	COG1051	belongs to the nudix hydrolase family
FOC88_15295	COG1335	isochorismatase
FOC88_15315	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
FOC88_15320	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
FOC88_15335	COG0367	asparagine synthase
FOC88_15340	COG0071	Belongs to the small heat shock protein (HSP20) family
FOC88_15345	COG1999	signal sequence binding
FOC88_15350	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
FOC88_15355	COG1307	EDD domain protein, DegV family
FOC88_15365	COG0805	protein transport
FOC88_15375	COG1272	protein, Hemolysin III
FOC88_15380	COG0204	Acyl-transferase
FOC88_15390	COG0768	penicillin binding
FOC88_15405	COG3250	beta-galactosidase activity
FOC88_15410	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
FOC88_15430	COG0546	phosphoglycolate phosphatase activity
FOC88_15440	COG4473	ABC transporter
FOC88_15445	COG1131	(ABC) transporter
FOC88_15455	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
FOC88_15460	COG0456	acetyltransferase
FOC88_15470	COG1794	racemase activity, acting on amino acids and derivatives
FOC88_15475	COG1454	alcohol dehydrogenase
FOC88_15480	COG2610	gluconate transmembrane transporter activity
FOC88_15505	COG0733	neurotransmitter:sodium symporter activity
FOC88_15520	COG5002	protein histidine kinase activity
FOC88_15520	COG3850	Histidine kinase
FOC88_15525	COG0745	RESPONSE REGULATOR receiver
FOC88_15530	COG0471	metal ion transport
FOC88_15535	COG1929	Belongs to the glycerate kinase type-1 family
FOC88_15590	COG5444	nuclease activity
FOC88_15620	COG5444	nuclease activity
FOC88_15645	COG1674	ftsk spoiiie
FOC88_15665	COG0017	Asparaginyl-tRNA synthetase
FOC88_15715	COG2521	methyltransferase
FOC88_15715	COG2136	Putative SAM-dependent methyltransferase
FOC88_15730	COG1413	lyase activity
FOC88_15735	COG0629	single-stranded DNA binding
FOC88_15750	COG0488	(ABC) transporter
FOC88_15755	COG1418	mRNA catabolic process
FOC88_15770	COG2359	stage V sporulation protein S
FOC88_15805	COG2846	Di-iron-containing protein involved in the repair of iron-sulfur clusters
FOC88_15810	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
FOC88_15815	COG2146	nitrite reductase [NAD(P)H] activity
FOC88_15820	COG1587	Uroporphyrinogen-III synthase
FOC88_15820	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
FOC88_15830	COG1648	precorrin-2 dehydrogenase activity
FOC88_15840	COG2223	nitrite transmembrane transporter activity
FOC88_15850	COG0314	molybdopterin synthase activity
FOC88_15855	COG0303	'Molybdopterin
FOC88_15860	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
FOC88_15865	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
FOC88_15870	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
FOC88_15880	COG1131	(ABC) transporter
FOC88_15890	COG2181	nitrate reductase activity
FOC88_15895	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
FOC88_15900	COG1140	nitrate reductase beta subunit
FOC88_15905	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
FOC88_15910	COG0714	Associated with various cellular activities
FOC88_15915	COG1721	protein (some members contain a von Willebrand factor type A (vWA) domain
FOC88_15920	COG1305	Transglutaminase-like
FOC88_15925	COG0386	Belongs to the glutathione peroxidase family
FOC88_15945	COG0661	Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis
FOC88_15960	COG1595	DNA-templated transcription, initiation
FOC88_15965	COG0604	alcohol dehydrogenase
FOC88_15975	COG0346	lactoylglutathione lyase activity
FOC88_15980	COG1082	Xylose isomerase domain protein TIM barrel
FOC88_16000	COG2226	methyltransferase
FOC88_16025	COG3874	Sporulation protein YtfJ
FOC88_16050	COG0456	acetyltransferase
FOC88_16080	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FOC88_16085	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
FOC88_16100	COG4106	trans-aconitate 2-methyltransferase activity
FOC88_16105	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
FOC88_16115	COG0561	phosphatase activity
FOC88_16135	COG2211	Major facilitator Superfamily
FOC88_16140	COG0154	amidase activity
FOC88_16150	COG1876	peptidase activity
FOC88_16160	COG0860	N-Acetylmuramoyl-L-alanine amidase
FOC88_16180	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FOC88_16185	COG1114	Component of the transport system for branched-chain amino acids
FOC88_16200	COG1253	flavin adenine dinucleotide binding
FOC88_16205	COG2839	Protein conserved in bacteria
FOC88_16210	COG0702	epimerase
FOC88_16225	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FOC88_16235	COG1607	acyl-coa hydrolase
FOC88_16240	COG3689	TIGRFAM TIGR03943 family protein
FOC88_16245	COG0701	Predicted permease
FOC88_16255	COG2244	polysaccharide biosynthetic process
FOC88_16260	COG0586	Pfam SNARE associated Golgi protein
FOC88_16265	COG1051	belongs to the nudix hydrolase family
FOC88_16270	COG5337	Spore coat protein CotH
FOC88_16280	COG0406	alpha-ribazole phosphatase activity
FOC88_16295	COG4166	transmembrane transport
FOC88_16305	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
FOC88_16315	COG0702	epimerase
FOC88_16325	COG3443	Belongs to the bacterial solute-binding protein 9 family
FOC88_16325	COG0803	Belongs to the bacterial solute-binding protein 9 family
FOC88_16380	COG0456	acetyltransferase
FOC88_16385	COG0523	cobalamin synthesis protein
FOC88_16390	COG4989	oxidoreductase activity
FOC88_16400	COG1231	oxidoreductase activity
FOC88_16410	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
FOC88_16425	COG0783	Belongs to the Dps family
FOC88_16430	COG3949	Membrane
FOC88_16445	COG0840	transmembrane signaling receptor activity
FOC88_16470	COG2814	Major facilitator Superfamily
FOC88_16475	COG0667	Aldo Keto reductase
FOC88_16480	COG0640	Transcriptional regulator
FOC88_16485	COG1404	Belongs to the peptidase S8 family
FOC88_16500	COG2002	toxin-antitoxin pair type II binding
FOC88_16505	COG0577	efflux transmembrane transporter activity
FOC88_16540	COG1752	Esterase of the alpha-beta hydrolase superfamily
FOC88_16550	COG1279	arginine transmembrane transporter activity
FOC88_16555	COG2814	Major facilitator Superfamily
FOC88_16565	COG1082	Xylose isomerase domain protein TIM barrel
FOC88_16580	COG0318	PFAM AMP-dependent synthetase and ligase
FOC88_16585	COG4264	IucA IucC family
FOC88_16595	COG1247	-acetyltransferase
FOC88_16600	COG1285	pathogenesis
FOC88_16615	COG5002	protein histidine kinase activity
FOC88_16620	COG0745	RESPONSE REGULATOR receiver
FOC88_16630	COG1316	TRANSCRIPTIONal
FOC88_16655	COG0460	homoserine dehydrogenase
FOC88_16670	COG5658	integral membrane protein
FOC88_16690	COG0300	oxidoreductase activity
FOC88_16700	COG5002	protein histidine kinase activity
FOC88_16705	COG0745	RESPONSE REGULATOR receiver
FOC88_16710	COG1132	(ABC) transporter
FOC88_16720	COG0791	NLP P60 protein
FOC88_16720	COG1388	LysM domain
FOC88_16735	COG1686	Belongs to the peptidase S11 family
FOC88_16740	COG1619	proteins homologs of microcin C7 resistance protein MccF
FOC88_16755	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
FOC88_16760	COG4988	ABC transporter
FOC88_16765	COG1294	oxidase, subunit
FOC88_16770	COG1271	oxidase subunit
FOC88_16800	COG0583	DNA-binding transcription factor activity
FOC88_16820	COG0411	ABC transporter
FOC88_16830	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
FOC88_16835	COG2030	dehydratase
FOC88_16840	COG0318	PFAM AMP-dependent synthetase and ligase
FOC88_16855	COG0523	cobalamin synthesis protein
FOC88_16860	COG1231	oxidoreductase activity
FOC88_16870	COG0628	permease
FOC88_16885	COG0778	Nitroreductase
FOC88_16890	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
FOC88_16895	COG1959	2 iron, 2 sulfur cluster binding
FOC88_16900	COG0583	DNA-binding transcription factor activity
FOC88_16905	COG0697	spore germination
FOC88_16910	COG4549	nuclear export factor GLE1
FOC88_16915	COG2372	response to copper ion
FOC88_16915	COG1276	copper resistance
FOC88_16925	COG1114	Component of the transport system for branched-chain amino acids
FOC88_16960	COG2132	Multicopper oxidase
FOC88_16965	COG0006	proline dipeptidase activity
FOC88_16990	COG4846	Membrane protein involved in cytochrome C biogenesis
FOC88_17000	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
FOC88_17005	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
FOC88_17015	COG2390	Transcriptional regulator
FOC88_17040	COG0531	amino acid
FOC88_17045	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
FOC88_17060	COG1914	H( )-stimulated, divalent metal cation uptake system
FOC88_17080	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FOC88_17110	COG4166	transmembrane transport
FOC88_17130	COG0427	acetyl-CoA hydrolase
FOC88_17135	COG3279	Response regulator of the LytR AlgR family
FOC88_17145	COG3384	dioxygenase
FOC88_17150	COG2814	Major facilitator Superfamily
FOC88_17175	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
FOC88_17185	COG0059	Involved in the biosynthesis of branched-chain amino acids (BCAA). Catalyzes an alkyl-migration followed by a ketol- acid reduction of (S)-2-acetolactate (S2AL) to yield (R)-2,3- dihydroxy-isovalerate. In the isomerase reaction, S2AL is rearranged via a Mg-dependent methyl migration to produce 3- hydroxy-3-methyl-2-ketobutyrate (HMKB). In the reductase reaction, this 2-ketoacid undergoes a metal-dependent reduction by NADPH to yield (R)-2,3-dihydroxy-isovalerate
FOC88_17190	COG0440	acetolactate synthase activity
FOC88_17195	COG0028	Belongs to the TPP enzyme family
FOC88_17200	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
FOC88_17210	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
FOC88_17225	COG2323	membrane
FOC88_17230	COG5566	PFAM Mor transcription activator
FOC88_17240	COG0733	neurotransmitter:sodium symporter activity
FOC88_17245	COG2244	polysaccharide biosynthetic process
FOC88_17260	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
FOC88_17265	COG2223	nitrite transmembrane transporter activity
FOC88_17270	COG4166	transmembrane transport
FOC88_17275	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
FOC88_17285	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
FOC88_17290	COG0477	Major facilitator Superfamily
FOC88_17300	COG1695	Transcriptional regulator
FOC88_17310	COG1966	Carbon starvation protein
FOC88_17325	COG2814	Major facilitator Superfamily
FOC88_17335	COG0860	N-Acetylmuramoyl-L-alanine amidase
FOC88_17340	COG1051	belongs to the nudix hydrolase family
FOC88_17395	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
FOC88_17400	COG0784	Response regulator, receiver
FOC88_17405	COG4191	Histidine kinase
FOC88_17410	COG0281	malic enzyme
FOC88_17415	COG1027	Aspartate ammonia-lyase
FOC88_17425	COG0528	UMP kinase activity
FOC88_17430	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FOC88_17445	COG1131	(ABC) transporter
FOC88_17480	COG2733	membrane
FOC88_17510	COG0785	Cytochrome C biogenesis protein
FOC88_17530	COG3340	Belongs to the peptidase S51 family
FOC88_17535	COG0534	Mate efflux family protein
FOC88_17555	COG0114	fumarate hydratase activity
FOC88_17565	COG0789	Transcriptional regulator
FOC88_17570	COG1757	Na H antiporter
FOC88_17575	COG1216	Glycosyl transferase, family 2
FOC88_17575	COG0438	transferase activity, transferring glycosyl groups
FOC88_17585	COG0701	Predicted permease
FOC88_17590	COG0523	cobalamin synthesis protein
FOC88_17595	COG0697	spore germination
FOC88_17600	COG1802	Transcriptional regulator
FOC88_17630	COG0367	asparagine synthase
FOC88_17640	COG1846	Transcriptional regulator
FOC88_17660	COG0406	alpha-ribazole phosphatase activity
FOC88_17670	COG1686	Belongs to the peptidase S11 family
FOC88_17700	COG1234	tRNA 3'-trailer cleavage
FOC88_17715	COG3842	ATPase activity
FOC88_17720	COG0583	DNA-binding transcription factor activity
FOC88_17745	COG2329	Antibiotic biosynthesis monooxygenase
FOC88_17780	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
FOC88_17785	COG4786	Flagellar basal body rod
FOC88_17790	COG1419	protein localization to endoplasmic reticulum
FOC88_17795	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
FOC88_17800	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
FOC88_17810	COG1987	bacterial-type flagellum assembly
FOC88_17815	COG1338	Plays a role in the flagellum-specific transport system
FOC88_17825	COG1776	CheC inhibitor of MCP methylation
FOC88_17825	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
FOC88_17830	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
FOC88_17840	COG0741	lytic transglycosylase activity
FOC88_17845	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
FOC88_17865	COG0835	chemotaxis
FOC88_17865	COG0784	Response regulator, receiver
FOC88_17900	COG1157	protein secretion by the type III secretion system
FOC88_17910	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
FOC88_17925	COG1558	bacterial-type flagellum-dependent cell motility
FOC88_17930	COG1815	bacterial-type flagellum-dependent cell motility
FOC88_17945	COG1345	Required for morphogenesis and for the elongation of the flagellar filament by facilitating polymerization of the flagellin monomers at the tip of growing filament. Forms a capping structure, which prevents flagellin subunits (transported through the central channel of the flagellum) from leaking out without polymerization at the distal end
FOC88_17950	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
FOC88_17955	COG1256	bacterial-type flagellum assembly
FOC88_17975	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
FOC88_17990	COG1776	CheC inhibitor of MCP methylation
FOC88_17990	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
FOC88_17995	COG2198	Histidine kinase
FOC88_17995	COG0643	Histidine kinase
FOC88_18000	COG2201	protein-glutamate methylesterase activity
FOC88_18005	COG1360	Flagellar Motor Protein
FOC88_18010	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
FOC88_18020	COG1923	regulation of RNA biosynthetic process
FOC88_18040	COG2814	Major facilitator Superfamily
FOC88_18075	COG1434	Gram-negative-bacterium-type cell wall biogenesis
FOC88_18080	COG2323	membrane
FOC88_18090	COG4978	Transcriptional regulator
FOC88_18090	COG0789	Transcriptional regulator
FOC88_18095	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
FOC88_18100	COG0475	glutathione-regulated potassium exporter activity
FOC88_18110	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
FOC88_18115	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
FOC88_18120	COG3162	membrane
FOC88_18135	COG1280	lysine exporter protein (LysE YggA)
FOC88_18140	COG3403	YqcI/YcgG family
FOC88_18175	COG0328	RNA-DNA hybrid ribonuclease activity
FOC88_18195	COG0454	-acetyltransferase
FOC88_18210	COG0438	transferase activity, transferring glycosyl groups
FOC88_18215	COG1215	transferase activity, transferring glycosyl groups
FOC88_18230	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
FOC88_18255	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
FOC88_18270	COG0754	glutathionylspermidine amidase activity
FOC88_18305	COG0456	acetyltransferase
FOC88_18315	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
FOC88_18320	COG2311	Membrane
FOC88_18325	COG2233	PERMEase
FOC88_18335	COG0024	Methionine aminopeptidase
FOC88_18340	COG3173	Aminoglycoside phosphotransferase
FOC88_18350	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
FOC88_18355	COG1199	ATP-dependent helicase activity
FOC88_18365	COG0116	Belongs to the methyltransferase superfamily
FOC88_18425	COG4499	WXG100 protein secretion system (Wss), protein YukC
FOC88_18425	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
FOC88_18435	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
FOC88_18440	COG3935	DnaD domain protein
FOC88_18460	COG1199	ATP-dependent helicase activity
FOC88_18460	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
FOC88_18495	COG0438	transferase activity, transferring glycosyl groups
FOC88_18500	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
FOC88_18515	COG1694	Mazg nucleotide pyrophosphohydrolase
FOC88_18520	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
FOC88_18530	COG2738	Putative neutral zinc metallopeptidase
FOC88_18545	COG4347	Protein of unknown function (DUF1405)
FOC88_18555	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
FOC88_18575	COG0457	Tetratricopeptide repeat
FOC88_18580	COG0079	Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily
FOC88_18600	COG0142	geranyltranstransferase activity
FOC88_18610	COG0142	geranyltranstransferase activity
FOC88_18625	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
FOC88_18700	COG0492	ferredoxin-NADP+ reductase activity
FOC88_18720	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
FOC88_18725	COG4862	establishment of competence for transformation
FOC88_18735	COG1408	metallophosphoesterase
FOC88_18745	COG1266	CAAX protease self-immunity
FOC88_18750	COG0514	ATP-dependent DNA helicase (RecQ)
FOC88_18760	COG1141	Ferredoxin
FOC88_18765	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
FOC88_18775	COG4942	peptidase
FOC88_18780	COG2096	Adenosyltransferase
FOC88_18785	COG5002	protein histidine kinase activity
FOC88_18790	COG0745	RESPONSE REGULATOR receiver
FOC88_18795	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
FOC88_18800	COG1333	cytochrome c biogenesis protein
FOC88_18810	COG1187	pseudouridine synthase activity
FOC88_18815	COG0700	Nucleoside recognition
FOC88_18820	COG2715	membrane protein required for spore maturation
FOC88_18825	COG1686	Belongs to the peptidase S11 family
FOC88_18830	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
FOC88_18845	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
FOC88_18845	COG0392	lysyltransferase activity
FOC88_18865	COG5002	protein histidine kinase activity
FOC88_18870	COG0582	viral genome integration into host DNA
FOC88_18880	COG1801	Protein of unknown function DUF72
FOC88_18885	COG3852	Histidine kinase
FOC88_18900	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
FOC88_18905	COG1392	Phosphate transport regulator
FOC88_18910	COG0306	phosphate transporter
FOC88_18915	COG0730	response to heat
FOC88_18955	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
FOC88_18965	COG1114	Component of the transport system for branched-chain amino acids
FOC88_18975	COG2197	response regulator
FOC88_18980	COG4585	Histidine kinase
FOC88_18985	COG4758	membrane
FOC88_19000	COG1757	Na H antiporter
FOC88_19020	COG0733	neurotransmitter:sodium symporter activity
FOC88_19025	COG1648	precorrin-2 dehydrogenase activity
FOC88_19045	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
FOC88_19050	COG0529	Catalyzes the synthesis of activated sulfate
FOC88_19070	COG0019	diaminopimelate decarboxylase activity
FOC88_19080	COG1368	sulfuric ester hydrolase activity
FOC88_19085	COG1183	phosphatidylcholine synthase activity
FOC88_19100	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
FOC88_19175	COG0440	acetolactate synthase activity
FOC88_19180	COG0028	Belongs to the TPP enzyme family
FOC88_19185	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
FOC88_19205	COG3874	Sporulation protein YtfJ
FOC88_19210	COG4709	membrane
FOC88_19215	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
FOC88_19220	COG1301	dicarboxylic acid transport
FOC88_19230	COG1846	Transcriptional regulator
FOC88_19245	COG1968	undecaprenyl-diphosphatase activity
FOC88_19250	COG0534	Mate efflux family protein
FOC88_19270	COG3173	Aminoglycoside phosphotransferase
FOC88_19285	COG0716	FMN binding
FOC88_19310	COG1696	Membrane protein involved in D-alanine export
FOC88_19320	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
FOC88_19325	COG2070	2-Nitropropane dioxygenase
FOC88_19330	COG1619	proteins homologs of microcin C7 resistance protein MccF
FOC88_19340	COG1335	isochorismatase
FOC88_19350	COG1522	sequence-specific DNA binding
FOC88_19365	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
FOC88_19370	COG1131	(ABC) transporter
FOC88_19380	COG1131	(ABC) transporter
FOC88_19385	COG1725	Transcriptional regulator
FOC88_19390	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
FOC88_19410	COG1780	Probably involved in ribonucleotide reductase function
FOC88_19440	COG4873	Protein conserved in bacteria
FOC88_19455	COG0720	synthase
FOC88_19465	COG5002	protein histidine kinase activity
FOC88_19470	COG2318	DinB family
FOC88_19480	COG1846	Transcriptional regulator
FOC88_19485	COG3852	Histidine kinase
FOC88_19495	COG2861	carbohydrate metabolic process
FOC88_19505	COG0235	Class ii aldolase
FOC88_19515	COG1349	DNA-binding transcription factor activity
FOC88_19540	COG3842	ATPase activity
FOC88_19545	COG1840	ABC-type Fe3 transport system, periplasmic component
FOC88_19560	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
FOC88_19570	COG3243	poly(R)-hydroxyalkanoic acid synthase
FOC88_19575	COG1028	Short-chain dehydrogenase reductase Sdr
FOC88_19595	COG2030	dehydratase
FOC88_19605	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
FOC88_19610	COG0861	Integral membrane protein TerC family
FOC88_19615	COG2116	formate transmembrane transporter activity
FOC88_19625	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
FOC88_19645	COG2186	Transcriptional regulator
FOC88_19650	COG5002	protein histidine kinase activity
FOC88_19655	COG0745	RESPONSE REGULATOR receiver
FOC88_19665	COG3835	regulator
FOC88_19670	COG0277	FAD linked oxidase domain protein
FOC88_19675	COG0247	lactate metabolic process
FOC88_19680	COG2340	Cysteine-rich secretory protein family
FOC88_19690	COG0564	pseudouridine synthase activity
FOC88_19700	COG2409	Drug exporters of the RND superfamily
FOC88_19710	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
FOC88_19715	COG1177	transmembrane transport
FOC88_19720	COG1176	ABC-type spermidine putrescine transport system, permease component I
FOC88_19730	COG1012	belongs to the aldehyde dehydrogenase family
FOC88_19765	COG0681	Belongs to the peptidase S26 family
FOC88_19770	COG1686	Belongs to the peptidase S11 family
FOC88_19780	COG2226	methyltransferase
FOC88_19840	COG1476	TRANSCRIPTIONal
FOC88_19850	COG0508	dehydrogenase complex catalyzes the overall conversion of
FOC88_19900	COG5634	Uncharacterized conserved protein (DUF2278)
FOC88_19905	COG1620	l-lactate permease
FOC88_19940	COG0512	Glutamine amidotransferase of anthranilate synthase
FOC88_19940	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
FOC88_19950	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
FOC88_19955	COG5492	domain, Protein
FOC88_19970	COG2382	esterase
FOC88_19980	COG2153	protein acetylation
FOC88_20025	COG1091	dTDP-4-dehydrorhamnose reductase activity
FOC88_20040	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
FOC88_20060	COG0457	Tetratricopeptide repeat
FOC88_20060	COG0463	Glycosyl transferase, family 2
FOC88_20080	COG1216	Glycosyl transferase, family 2
FOC88_20080	COG0463	Glycosyl transferase, family 2
FOC88_20085	COG0772	Belongs to the SEDS family
FOC88_20100	COG0564	pseudouridine synthase activity
FOC88_20110	COG2357	RelA SpoT domain protein
FOC88_20120	COG4116	CYTH
FOC88_20125	COG2346	COG2346, Truncated hemoglobins
FOC88_20140	COG1164	Oligoendopeptidase f
FOC88_20150	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FOC88_20155	COG4862	establishment of competence for transformation
FOC88_20160	COG0861	Integral membrane protein TerC family
FOC88_20175	COG4166	transmembrane transport
FOC88_20180	COG0534	Mate efflux family protein
FOC88_20185	COG4608	Belongs to the ABC transporter superfamily
FOC88_20190	COG0444	Belongs to the ABC transporter superfamily
FOC88_20195	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FOC88_20200	COG0601	transmembrane transport
FOC88_20205	COG4166	transmembrane transport
FOC88_20215	COG0180	Tryptophanyl-tRNA synthetase
FOC88_20225	COG5504	Zn-dependent protease
FOC88_20230	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
FOC88_20235	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
FOC88_20250	COG2267	carboxylic ester hydrolase activity
FOC88_20260	COG0542	response to heat
FOC88_20270	COG0561	phosphatase activity
FOC88_20285	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
FOC88_20295	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
FOC88_20305	COG2996	Protein conserved in bacteria
FOC88_20325	COG0004	ammonium transporteR
FOC88_20330	COG0753	catalase activity
FOC88_20340	COG0367	asparagine synthase
FOC88_20365	COG0179	Fumarylacetoacetate (FAA) hydrolase
FOC88_20425	COG0398	Pfam SNARE associated Golgi protein
FOC88_20430	COG4903	ComK protein
FOC88_20455	COG2224	Isocitrate lyase
FOC88_20460	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
FOC88_20480	COG0697	spore germination
FOC88_20485	COG0501	Belongs to the peptidase M48B family
FOC88_20510	COG0745	RESPONSE REGULATOR receiver
FOC88_20515	COG2205	protein histidine kinase activity
FOC88_20530	COG3708	Transcriptional regulator
FOC88_20530	COG2207	Transcriptional regulator
FOC88_20535	COG1595	DNA-templated transcription, initiation
FOC88_20545	COG1078	dGTPase activity
FOC88_20550	COG1408	metallophosphoesterase
FOC88_20570	COG0318	PFAM AMP-dependent synthetase and ligase
FOC88_20580	COG0095	Lipoate-protein ligase
FOC88_20585	COG1234	tRNA 3'-trailer cleavage
FOC88_20595	COG1609	Transcriptional regulator
FOC88_20600	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
FOC88_20620	COG1511	domain protein
FOC88_20625	COG1309	transcriptional regulator
FOC88_20670	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
FOC88_20675	COG2329	Antibiotic biosynthesis monooxygenase
FOC88_20680	COG3428	Bacterial PH domain
FOC88_20685	COG3402	PFAM membrane-flanked domain
FOC88_20725	COG3428	Bacterial PH domain
FOC88_20730	COG3402	PFAM membrane-flanked domain
FOC88_20740	COG1309	transcriptional regulator
FOC88_20755	COG4473	ABC transporter
FOC88_20760	COG1131	(ABC) transporter
FOC88_20765	COG0537	adenosine 5'-monophosphoramidase activity
FOC88_20770	COG4980	gas vesicle protein
FOC88_20790	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
FOC88_20795	COG3973	AAA domain
FOC88_20805	COG0477	Major facilitator Superfamily
FOC88_20810	COG0477	Major facilitator Superfamily
FOC88_20825	COG0772	Belongs to the SEDS family
FOC88_20850	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
FOC88_20860	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
FOC88_20865	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
FOC88_20885	COG2267	carboxylic ester hydrolase activity
FOC88_20895	COG0346	lactoylglutathione lyase activity
FOC88_20900	COG0346	lactoylglutathione lyase activity
FOC88_20915	COG5444	nuclease activity
FOC88_20935	COG4717	serine-type aminopeptidase activity
FOC88_20940	COG0420	3'-5' exonuclease activity
FOC88_20995	COG2198	Histidine kinase
FOC88_20995	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FOC88_20995	COG0784	Response regulator, receiver
FOC88_20995	COG2205	protein histidine kinase activity
FOC88_21000	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
FOC88_21005	COG2208	phosphoserine phosphatase activity
FOC88_21015	COG1191	sigma factor activity
FOC88_21040	COG3237	CsbD-like
FOC88_21090	COG2770	Histidine kinase
FOC88_21090	COG3437	response regulator, receiver
FOC88_21105	COG1959	2 iron, 2 sulfur cluster binding
FOC88_21115	COG2376	Dihydroxyacetone kinase
FOC88_21125	COG2376	Dihydroxyacetone kinase
FOC88_21145	COG1183	phosphatidylcholine synthase activity
FOC88_21160	COG1309	transcriptional regulator
FOC88_21165	COG3320	Male sterility
FOC88_21165	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
FOC88_21210	COG0477	Major facilitator Superfamily
FOC88_21250	COG0305	Participates in initiation and elongation during chromosome replication
FOC88_21270	COG0789	Transcriptional regulator
FOC88_21270	COG4978	Transcriptional regulator
FOC88_21330	COG3181	Tripartite tricarboxylate transporter family receptor
FOC88_21335	COG4565	transcriptional regulatory protein
FOC88_21345	COG0477	Major facilitator Superfamily
FOC88_21360	COG4608	Belongs to the ABC transporter superfamily
FOC88_21365	COG0444	Belongs to the ABC transporter superfamily
FOC88_21370	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FOC88_21375	COG0601	transmembrane transport
FOC88_21440	COG1363	Peptidase, m42
FOC88_21470	COG1024	Enoyl-CoA hydratase
FOC88_21490	COG4196	transglutaminase domain protein
FOC88_21495	COG0860	N-Acetylmuramoyl-L-alanine amidase
FOC88_21505	COG2244	polysaccharide biosynthetic process
FOC88_21510	COG0653	protein targeting
FOC88_21530	COG0659	secondary active sulfate transmembrane transporter activity
FOC88_21545	COG0635	Involved in the biosynthesis of porphyrin-containing compound
FOC88_21550	COG3409	Peptidoglycan-binding domain 1 protein
FOC88_21550	COG5632	N-Acetylmuramoyl-L-alanine amidase
FOC88_21560	COG0561	phosphatase activity
FOC88_21570	COG3527	Alpha-acetolactate decarboxylase
FOC88_21575	COG0028	Belongs to the TPP enzyme family
FOC88_21605	COG0189	ligase activity
FOC88_21620	COG1126	abc transporter atp-binding protein
FOC88_21625	COG0765	amino acid transport
FOC88_21630	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FOC88_21635	COG1132	(ABC) transporter
FOC88_21640	COG1132	(ABC) transporter
FOC88_21645	COG1012	belongs to the aldehyde dehydrogenase family
FOC88_21655	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
FOC88_21660	COG0531	amino acid
FOC88_21670	COG0753	catalase activity
FOC88_21670	COG0693	protein deglycase activity
FOC88_21675	COG0693	protein deglycase activity
FOC88_21685	COG2211	Major facilitator Superfamily
FOC88_21690	COG4533	DNA binding
FOC88_21700	COG2249	NAD(P)H dehydrogenase (quinone) activity
FOC88_21710	COG1733	regulation of RNA biosynthetic process
FOC88_21715	COG2814	Major facilitator Superfamily
FOC88_21720	COG1309	transcriptional regulator
FOC88_21725	COG2076	Multidrug Resistance protein
FOC88_21740	COG1522	sequence-specific DNA binding
FOC88_21760	COG2259	Doxx family
FOC88_21770	COG1263	PTS System
FOC88_21770	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FOC88_21780	COG1737	Transcriptional regulator
FOC88_21790	COG0475	glutathione-regulated potassium exporter activity
FOC88_21795	COG0531	amino acid
FOC88_21830	COG0586	Pfam SNARE associated Golgi protein
FOC88_21865	COG3546	catalase activity
FOC88_21870	COG1114	Component of the transport system for branched-chain amino acids
FOC88_21885	COG5522	Integral membrane protein (intg_mem_TP0381)
FOC88_21895	COG1136	(ABC) transporter
FOC88_21900	COG0577	efflux transmembrane transporter activity
FOC88_21905	COG1388	LysM domain
FOC88_21905	COG3584	3D domain protein
FOC88_21925	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
FOC88_21930	COG1447	Phosphotransferase system cellobiose-specific component IIA
FOC88_21935	COG3711	transcriptional antiterminator
FOC88_21935	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
FOC88_21950	COG1283	sodium-dependent phosphate transmembrane transporter activity
FOC88_21955	COG0604	alcohol dehydrogenase
FOC88_21960	COG1316	TRANSCRIPTIONal
FOC88_21970	COG0730	response to heat
FOC88_21975	COG2210	Belongs to the sulfur carrier protein TusA family
FOC88_21985	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
FOC88_21985	COG0425	Belongs to the sulfur carrier protein TusA family
FOC88_21990	COG0425	Belongs to the sulfur carrier protein TusA family
FOC88_21995	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
FOC88_21995	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
FOC88_22000	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
FOC88_22000	COG0425	Belongs to the sulfur carrier protein TusA family
FOC88_22005	COG1937	Protein conserved in bacteria
FOC88_22010	COG0446	pyridine nucleotide-disulphide oxidoreductase
FOC88_22020	COG3591	Belongs to the peptidase S1B family
FOC88_22025	COG2719	SpoVR family
FOC88_22030	COG0778	Nitroreductase
FOC88_22070	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
FOC88_22080	COG1609	Transcriptional regulator
FOC88_22085	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FOC88_22085	COG1263	PTS System
FOC88_22090	COG1621	beta-fructofuranosidase activity
FOC88_22095	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FOC88_22105	COG1376	ErfK ybiS ycfS ynhG family protein
FOC88_22110	COG1028	Short-chain dehydrogenase reductase Sdr
FOC88_22115	COG2252	PERMEase
FOC88_22140	COG1846	Transcriptional regulator
FOC88_22145	COG2814	Major facilitator Superfamily
FOC88_22150	COG2205	protein histidine kinase activity
FOC88_22190	COG0351	phosphomethylpyrimidine kinase
FOC88_22195	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
FOC88_22205	COG2104	thiamine diphosphate biosynthetic process
FOC88_22210	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FOC88_22215	COG0352	thiamine-phosphate diphosphorylase activity
FOC88_22220	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
FOC88_22225	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FOC88_22230	COG1116	anion transmembrane transporter activity
FOC88_22235	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
FOC88_22255	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
FOC88_22375	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FOC88_22380	COG0581	inorganic phosphate transmembrane transporter activity
FOC88_22385	COG0573	inorganic phosphate transmembrane transporter activity
FOC88_22390	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
FOC88_22395	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
FOC88_22395	COG1918	ferrous iron import across plasma membrane
FOC88_22400	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
FOC88_22405	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
FOC88_22415	COG0531	amino acid
FOC88_22420	COG0697	spore germination
FOC88_22425	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
FOC88_22440	COG4990	cell redox homeostasis
FOC88_22445	COG0833	amino acid
FOC88_22450	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
FOC88_22455	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
FOC88_22470	COG0475	glutathione-regulated potassium exporter activity
FOC88_22470	COG0569	domain protein
FOC88_22480	COG2153	protein acetylation
FOC88_22495	COG2252	PERMEase
FOC88_22500	COG1113	amino acid transport
FOC88_22515	COG1114	Component of the transport system for branched-chain amino acids
FOC88_22520	COG3104	oligopeptide transport
FOC88_22535	COG1476	TRANSCRIPTIONal
FOC88_22540	COG1388	LysM domain
FOC88_22540	COG3584	3D domain protein
FOC88_22545	COG0840	transmembrane signaling receptor activity
FOC88_22575	COG3568	Endonuclease Exonuclease Phosphatase
FOC88_22590	COG1063	alcohol dehydrogenase
FOC88_22610	COG1879	ABC-type sugar transport system periplasmic component
FOC88_22615	COG1172	Belongs to the binding-protein-dependent transport system permease family
FOC88_22630	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
FOC88_22635	COG1609	Transcriptional regulator
FOC88_22640	COG0477	Major facilitator Superfamily
FOC88_22645	COG1846	Transcriptional regulator
FOC88_22650	COG2271	Major facilitator Superfamily
FOC88_22660	COG4608	Belongs to the ABC transporter superfamily
FOC88_22665	COG0601	transmembrane transport
FOC88_22690	COG0659	secondary active sulfate transmembrane transporter activity
FOC88_22705	COG5002	protein histidine kinase activity
FOC88_22710	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
FOC88_22715	COG2378	regulation of single-species biofilm formation
FOC88_22735	COG1595	DNA-templated transcription, initiation
FOC88_22750	COG0833	amino acid
FOC88_22755	COG0765	amino acid transport
FOC88_22760	COG0765	amino acid transport
FOC88_22765	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FOC88_22770	COG1126	abc transporter atp-binding protein
FOC88_22775	COG1115	amino acid carrier protein
FOC88_22780	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
FOC88_22790	COG0697	spore germination
FOC88_22805	COG0366	Alpha amylase catalytic
FOC88_22810	COG1263	PTS System
FOC88_22810	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FOC88_22815	COG2188	Transcriptional regulator
FOC88_22820	COG0531	amino acid
FOC88_22840	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FOC88_22845	COG0714	Associated with various cellular activities
FOC88_22850	COG4548	von Willebrand factor, type A
FOC88_22860	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FOC88_22865	COG0156	8-amino-7-oxononanoate synthase activity
FOC88_22870	COG2226	methyltransferase
FOC88_22880	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FOC88_22885	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FOC88_22890	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
FOC88_22895	COG3104	oligopeptide transport
FOC88_22910	COG1620	l-lactate permease
FOC88_22915	COG1027	Aspartate ammonia-lyase
FOC88_22920	COG1253	flavin adenine dinucleotide binding
FOC88_22925	COG0346	lactoylglutathione lyase activity
FOC88_22930	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
FOC88_22935	COG1316	TRANSCRIPTIONal
FOC88_22940	COG2720	vancomycin resistance protein
FOC88_22960	COG3227	Zinc metalloprotease (Elastase)
FOC88_22975	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
FOC88_22980	COG2217	Heavy metal translocating P-type atpase
FOC88_22985	COG0640	Transcriptional regulator
FOC88_22990	COG0531	amino acid
FOC88_23005	COG2427	Protein of unknown function (DUF1641)
FOC88_23010	COG3383	formate dehydrogenase (NAD+) activity
FOC88_23015	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
FOC88_23020	COG0454	-acetyltransferase
FOC88_23020	COG0456	acetyltransferase
FOC88_23025	COG0745	RESPONSE REGULATOR receiver
FOC88_23030	COG5002	protein histidine kinase activity
FOC88_23040	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
FOC88_23055	COG0281	malic enzyme
FOC88_23060	COG3493	citrate carrier protein
FOC88_23065	COG4565	transcriptional regulatory protein
FOC88_23070	COG3290	protein histidine kinase activity
FOC88_23080	COG4990	cell redox homeostasis
FOC88_23090	COG5002	protein histidine kinase activity
FOC88_23095	COG0745	RESPONSE REGULATOR receiver
FOC88_23100	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
FOC88_23110	COG0395	ABC-type sugar transport system, permease component
FOC88_23115	COG1175	transmembrane transport
FOC88_23120	COG3842	ATPase activity
FOC88_23125	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
FOC88_23145	COG2851	Citrate transporter
FOC88_23150	COG4565	transcriptional regulatory protein
FOC88_23155	COG3290	protein histidine kinase activity
FOC88_23165	COG2268	Band 7 protein
FOC88_23170	COG1585	Membrane protein implicated in regulation of membrane protease activity
FOC88_23180	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
FOC88_23200	COG2766	serine protein kinase
FOC88_23210	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
FOC88_23220	COG1600	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
FOC88_23230	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
FOC88_23235	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
FOC88_23350	COG0735	belongs to the Fur family
FOC88_23355	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
FOC88_23375	COG4555	ABC transporter
FOC88_23385	COG0070	glutamate synthase
FOC88_23385	COG0069	glutamate synthase activity
FOC88_23385	COG0067	glutamate synthase
FOC88_23390	COG4129	membrane
FOC88_23395	COG1132	(ABC) transporter
FOC88_23420	COG1194	a g-specific adenine glycosylase
FOC88_23425	COG1988	membrane-bound metal-dependent
FOC88_23455	COG1090	epimerase
FOC88_23460	COG1228	amidohydrolase
FOC88_23480	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
FOC88_23500	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
FOC88_23500	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
FOC88_23510	COG0463	Glycosyl transferase, family 2
FOC88_23525	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
FOC88_23530	COG1263	PTS System
FOC88_23530	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FOC88_23560	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
FOC88_23575	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
FOC88_23580	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
FOC88_23600	COG0535	radical SAM domain protein
FOC88_23610	COG0387	Pfam Sodium calcium exchanger
FOC88_23615	COG3871	stress protein (general stress protein 26)
FOC88_23630	COG0586	Pfam SNARE associated Golgi protein
FOC88_23640	COG0681	Belongs to the peptidase S26 family
FOC88_23655	COG0697	spore germination
FOC88_23660	COG2217	Heavy metal translocating P-type atpase
FOC88_23665	COG1295	ribonuclease BN
FOC88_23675	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
FOC88_23690	COG3853	Toxic anion resistance protein (TelA)
FOC88_23700	COG0861	Integral membrane protein TerC family
FOC88_23705	COG2310	stress, protein
FOC88_23710	COG2310	stress, protein
FOC88_23715	COG2310	stress, protein
FOC88_23745	COG2270	Major facilitator Superfamily
FOC88_23795	COG0488	(ABC) transporter
FOC88_23800	COG1116	anion transmembrane transporter activity
FOC88_23810	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
FOC88_23825	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
FOC88_23855	COG2190	(PTS) system
FOC88_23855	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
FOC88_23855	COG1263	PTS System
FOC88_23860	COG0366	Alpha amylase catalytic
FOC88_23900	COG0840	transmembrane signaling receptor activity
FOC88_23910	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
FOC88_23915	COG0765	amino acid transport
FOC88_23925	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
FOC88_23925	COG0723	plastoquinol--plastocyanin reductase activity
FOC88_23930	COG2814	Major facilitator Superfamily
FOC88_23935	COG3541	Predicted nucleotidyltransferase
FOC88_23990	COG0166	Belongs to the GPI family
FOC88_24005	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
FOC88_24010	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FOC88_24015	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FOC88_24035	COG0450	alkyl hydroperoxide reductase
FOC88_24050	COG1473	amidohydrolase
FOC88_24080	COG4807	Protein conserved in bacteria
FOC88_24090	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
FOC88_24095	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
FOC88_24100	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
FOC88_24115	COG2309	aminopeptidase activity
FOC88_24120	COG2076	Multidrug Resistance protein
FOC88_24125	COG1012	belongs to the aldehyde dehydrogenase family
FOC88_24135	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
FOC88_24140	COG0546	phosphoglycolate phosphatase activity
FOC88_24145	COG1597	lipid kinase activity
FOC88_24165	COG4682	membrane
FOC88_24170	COG1846	Transcriptional regulator
FOC88_24175	COG0003	Pfam Anion-transporting ATPase
FOC88_24190	COG1464	Belongs to the NlpA lipoprotein family
FOC88_24195	COG2011	ABC-type metal ion transport system permease component
FOC88_24200	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
FOC88_24205	COG1335	isochorismatase
FOC88_24225	COG4851	CamS sex pheromone cAM373 precursor
FOC88_24235	COG0210	DNA helicase
FOC88_24260	COG0151	Belongs to the GarS family
FOC88_24270	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
FOC88_24280	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
FOC88_24295	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
FOC88_24305	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
FOC88_24310	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
FOC88_24315	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
FOC88_24335	COG0745	RESPONSE REGULATOR receiver
FOC88_24340	COG2205	protein histidine kinase activity
FOC88_24380	COG1215	transferase activity, transferring glycosyl groups
FOC88_24400	COG2226	methyltransferase
FOC88_24430	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
FOC88_24455	COG5002	protein histidine kinase activity
FOC88_24465	COG2252	PERMEase
FOC88_24485	COG1266	CAAX protease self-immunity
FOC88_24500	COG0488	(ABC) transporter
FOC88_24510	COG0456	acetyltransferase
FOC88_24515	COG1214	PFAM Peptidase M22, glycoprotease
FOC88_24520	COG0802	atpase or kinase
FOC88_24615	COG2183	response to ionizing radiation
FOC88_24620	COG2337	Toxic component of a toxin-antitoxin (TA) module
FOC88_24625	COG0864	Transcriptional regulator
FOC88_24630	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
FOC88_24635	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
FOC88_24645	COG0705	Rhomboid family
FOC88_24645	COG0457	Tetratricopeptide repeat
FOC88_24650	COG4294	response to UV
FOC88_24660	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
FOC88_24670	COG2814	Major facilitator Superfamily
FOC88_24680	COG0179	Fumarylacetoacetate (FAA) hydrolase
FOC88_24685	COG3185	4-Hydroxyphenylpyruvate dioxygenase
FOC88_24715	COG0561	phosphatase activity
FOC88_24720	COG4608	Belongs to the ABC transporter superfamily
FOC88_24725	COG0444	Belongs to the ABC transporter superfamily
FOC88_24730	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FOC88_24735	COG0601	transmembrane transport
FOC88_24740	COG0747	negative chemotaxis
FOC88_24750	COG0842	Transport permease protein
FOC88_24755	COG1511	domain protein
FOC88_24755	COG0842	Transport permease protein
FOC88_24760	COG1131	(ABC) transporter
FOC88_24765	COG2197	response regulator
FOC88_24770	COG4585	Histidine kinase
FOC88_24775	COG0488	(ABC) transporter
FOC88_24800	COG5298	Protein conserved in bacteria
FOC88_24805	COG0084	hydrolase, TatD family'
FOC88_24815	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
FOC88_24825	COG1609	Transcriptional regulator
FOC88_24835	COG0204	Acyl-transferase
FOC88_24850	COG0697	spore germination
FOC88_24865	COG1910	domain protein
FOC88_24870	COG0725	ABC transporter, periplasmic molybdate-binding protein
FOC88_24875	COG4149	molybdate abc transporter
FOC88_24890	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
FOC88_24895	COG0656	L-ascorbic acid biosynthetic process
FOC88_24900	COG4166	transmembrane transport
FOC88_24905	COG4166	transmembrane transport
FOC88_24920	COG2207	Transcriptional regulator
FOC88_24930	COG4166	transmembrane transport
FOC88_24935	COG4608	Belongs to the ABC transporter superfamily
FOC88_24940	COG0444	Belongs to the ABC transporter superfamily
FOC88_24945	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
FOC88_24950	COG0601	transmembrane transport
FOC88_24965	COG2814	Major facilitator Superfamily
FOC88_24975	COG2271	Major facilitator Superfamily
FOC88_24980	COG0277	FAD linked oxidase domain protein
FOC88_24990	COG0604	alcohol dehydrogenase
FOC88_24995	COG1464	Belongs to the NlpA lipoprotein family
FOC88_25000	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
FOC88_25005	COG2011	ABC-type metal ion transport system permease component
FOC88_25010	COG1028	Short-chain dehydrogenase reductase Sdr
FOC88_25045	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
FOC88_25065	COG0596	Alpha beta hydrolase
FOC88_25085	COG4856	YbbR-like protein
FOC88_25090	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
FOC88_25170	COG0726	polysaccharide deacetylase
FOC88_25175	COG2194	sulfuric ester hydrolase activity
FOC88_25185	COG0489	protein tyrosine kinase activity
FOC88_25190	COG0860	N-Acetylmuramoyl-L-alanine amidase
FOC88_25215	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
FOC88_25250	COG0257	Belongs to the bacterial ribosomal protein bL36 family
FOC88_25260	COG0024	Methionine aminopeptidase
FOC88_25270	COG0201	protein transport
FOC88_25330	COG0255	Belongs to the universal ribosomal protein uL29 family
FOC88_25400	COG1358	cellular component organization or biogenesis
FOC88_25415	COG2813	Specifically methylates the guanine in position
FOC88_25435	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
FOC88_25440	COG0250	Participates in transcription elongation, termination and antitermination
FOC88_25445	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
FOC88_25460	COG3688	RNA-binding protein containing a PIN domain
FOC88_25465	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
FOC88_25480	COG1045	serine acetyltransferase
FOC88_25500	COG4956	integral membrane protein (PIN domain superfamily)
FOC88_25510	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
FOC88_25515	COG0542	response to heat
FOC88_25525	COG3880	PFAM UvrB UvrC protein
FOC88_25615	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
FOC88_25620	COG1396	sequence-specific DNA binding
FOC88_25625	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
FOC88_25630	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
FOC88_25635	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
FOC88_25640	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
FOC88_25645	COG0512	Glutamine amidotransferase of anthranilate synthase
FOC88_25650	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
FOC88_25655	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
FOC88_25670	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
FOC88_25685	COG2208	phosphoserine phosphatase activity
FOC88_25700	COG1098	S1 RNA binding domain
FOC88_25720	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
FOC88_25725	COG3956	TIGRFAM MazG family protein
FOC88_25730	COG2244	polysaccharide biosynthetic process
FOC88_25735	COG2002	toxin-antitoxin pair type II binding
FOC88_25740	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
FOC88_25770	COG0251	oxidation-reduction process
FOC88_25775	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
FOC88_25790	COG4466	Protein conserved in bacteria
FOC88_25805	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
FOC88_25810	COG0084	hydrolase, TatD family'
FOC88_25815	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FOC88_25815	COG0143	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
FOC88_25820	COG2002	toxin-antitoxin pair type II binding
FOC88_25825	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
FOC88_25835	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
FOC88_25845	COG1774	PSP1 C-terminal conserved region
FOC88_25850	COG0470	DNA polymerase III
FOC88_25860	COG1982	Orn Lys Arg decarboxylase major
FOC88_25915	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
FOC88_25925	COG0590	tRNA wobble adenosine to inosine editing
FOC88_25930	COG1335	isochorismatase
FOC88_25935	COG1428	Deoxynucleoside kinase
FOC88_25940	COG1428	Deoxynucleoside kinase
FOC88_25970	COG1686	Belongs to the peptidase S11 family
FOC88_25975	COG0517	IMP dehydrogenase activity
FOC88_25975	COG0516	GMP reductase activity
FOC88_26010	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
FOC88_26015	COG0187	DNA topoisomerase II activity
FOC88_26025	COG2501	S4 domain
FOC88_26030	COG0592	DNA-directed DNA polymerase activity
FOC88_26040	COG0230	Belongs to the bacterial ribosomal protein bL34 family
FOC88_26050	COG0706	membrane insertase activity
FOC88_26055	COG1847	R3H domain protein
FOC88_26080	COG1192	Involved in chromosome partitioning
FOC88_26085	COG1475	DNA binding
FOC88_26095	COG0668	transmembrane transport
FOC88_26100	COG4481	Protein conserved in bacteria
FOC88_26105	COG0012	GTP binding
FOC88_26115	COG0629	single-stranded DNA binding
FOC88_26125	COG4241	membrane
FOC88_26130	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
FOC88_26140	COG0305	Participates in initiation and elongation during chromosome replication
FOC88_26170	COG0745	RESPONSE REGULATOR receiver
FOC88_26175	COG5002	protein histidine kinase activity
FOC88_26180	COG4863	YycH protein
FOC88_26185	COG4853	Protein conserved in bacteria
FOC88_26190	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
FOC88_26195	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
FOC88_26215	COG1164	Oligoendopeptidase f
FOC88_26240	COG1272	protein, Hemolysin III
FOC88_26245	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
FOC88_26265	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
FOC88_26270	COG4362	Belongs to the NOS family. Bacterial NOS oxygenase subfamily
FOC88_26275	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
FOC88_26280	COG2814	Major facilitator Superfamily
FOC88_26285	COG3275	phosphorelay sensor kinase activity
FOC88_26290	COG3279	Response regulator of the LytR AlgR family
FOC88_26305	COG0628	permease
FOC88_26310	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
FOC88_26310	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
FOC88_26315	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
FOC88_26320	COG1309	transcriptional regulator
FOC88_26325	COG0463	Glycosyl transferase, family 2
FOC88_26345	COG0488	(ABC) transporter
FOC88_26360	COG1607	acyl-coa hydrolase
FOC88_26370	COG0840	transmembrane signaling receptor activity
FOC88_26395	COG0477	Major facilitator Superfamily
FOC88_26400	COG3279	Response regulator of the LytR AlgR family
FOC88_26405	COG1966	Carbon starvation protein
FOC88_26410	COG2879	small protein
FOC88_26415	COG3706	GGDEF domain
FOC88_26420	COG0351	phosphomethylpyrimidine kinase
FOC88_26425	COG4585	Histidine kinase
FOC88_26425	COG2203	Gaf domain
FOC88_26430	COG2197	response regulator
FOC88_26440	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
FOC88_26445	COG1011	Hydrolase
FOC88_26455	COG2873	o-acetylhomoserine
FOC88_26465	COG0460	homoserine dehydrogenase
FOC88_26475	COG1609	Transcriptional regulator
FOC88_26480	COG2755	lipolytic protein G-D-S-L family
FOC88_26485	COG1131	(ABC) transporter
FOC88_26490	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
FOC88_26500	COG2814	Major facilitator Superfamily
FOC88_26505	COG0561	phosphatase activity
FOC88_26510	COG2233	PERMEase
FOC88_26515	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
FOC88_26525	COG2363	Small membrane protein
FOC88_26535	COG3773	Cell wall hydrolase
FOC88_26550	COG0280	phosphate acetyltransferase
FOC88_26555	COG0095	Lipoate-protein ligase
FOC88_26575	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FOC88_26580	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
FOC88_26585	COG1120	ATPase activity
FOC88_26590	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
FOC88_26595	COG1078	dGTPase activity
FOC88_26605	COG1994	Peptidase M50
FOC88_26615	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
FOC88_26620	COG0584	glycerophosphoryl diester phosphodiesterase
FOC88_26625	COG0789	Transcriptional regulator
FOC88_26630	COG2814	Major facilitator Superfamily
FOC88_26640	COG0010	Belongs to the arginase family
FOC88_26655	COG1619	proteins homologs of microcin C7 resistance protein MccF
FOC88_26660	COG4506	Protein conserved in bacteria
FOC88_26670	COG1595	DNA-templated transcription, initiation
FOC88_26690	COG2234	aminopeptidase activity
FOC88_26700	COG0024	Methionine aminopeptidase
FOC88_26705	COG1131	(ABC) transporter
FOC88_26710	COG0842	Transport permease protein
FOC88_26715	COG4585	Histidine kinase
FOC88_26720	COG2197	response regulator
FOC88_26740	COG3300	MHYT domain
FOC88_26740	COG5001	Diguanylate cyclase
FOC88_26750	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
FOC88_26755	COG0247	lactate metabolic process
FOC88_26755	COG2181	nitrate reductase activity
FOC88_26760	COG0183	Belongs to the thiolase family
FOC88_26765	COG1250	3-hydroxyacyl-CoA dehydrogenase
FOC88_26770	COG1960	acyl-CoA dehydrogenase activity
FOC88_26775	COG1960	acyl-CoA dehydrogenase activity
FOC88_26795	COG4821	SIS domain
FOC88_26815	COG1494	fructose-1,6-bisphosphatase
FOC88_26820	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
FOC88_26840	COG2890	protein-(glutamine-N5) methyltransferase activity
FOC88_26855	COG0009	L-threonylcarbamoyladenylate synthase
FOC88_26870	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
FOC88_26875	COG2259	Doxx family
FOC88_26880	COG2190	(PTS) system
FOC88_26890	COG0698	ribose 5-phosphate isomerase
FOC88_26925	COG0356	it plays a direct role in the translocation of protons across the membrane
FOC88_26975	COG5001	Diguanylate cyclase
FOC88_26975	COG3300	MHYT domain
FOC88_26990	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
FOC88_26995	COG0649	NAD binding
FOC88_27010	COG0839	Belongs to the complex I subunit 6 family
FOC88_27020	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
FOC88_27025	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
FOC88_27030	COG1007	ATP synthesis coupled electron transport
FOC88_27035	COG4836	Membrane
FOC88_27050	COG2385	sporulation resulting in formation of a cellular spore
FOC88_27055	COG3279	Response regulator of the LytR AlgR family
FOC88_27070	COG0739	heme binding
FOC88_27085	COG0726	polysaccharide deacetylase
FOC88_27090	COG1609	Transcriptional regulator
FOC88_27110	COG1442	glycosyl transferase family 8
FOC88_27110	COG1216	Glycosyl transferase, family 2
FOC88_27120	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
FOC88_27120	COG1215	transferase activity, transferring glycosyl groups
FOC88_27130	COG0677	UDP-N-acetyl-D-mannosamine dehydrogenase activity
FOC88_27135	COG1682	transport, permease protein
FOC88_27140	COG1134	teichoic acid transport
FOC88_27145	COG1210	Utp--glucose-1-phosphate uridylyltransferase
FOC88_27165	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
FOC88_27170	COG0745	RESPONSE REGULATOR receiver
FOC88_27175	COG5002	protein histidine kinase activity
FOC88_27200	COG1136	(ABC) transporter
FOC88_27205	COG0577	efflux transmembrane transporter activity
FOC88_27245	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
FOC88_27250	COG4715	Zinc finger, swim domain protein
FOC88_27275	COG1388	LysM domain
FOC88_27275	COG3584	3D domain protein
FOC88_27280	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
FOC88_27285	COG1215	transferase activity, transferring glycosyl groups
FOC88_27295	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
FOC88_27300	COG0791	NLP P60 protein
FOC88_27300	COG1388	LysM domain
FOC88_27375	COG1484	DNA-dependent DNA replication
FOC88_27425	COG1396	sequence-specific DNA binding
FOC88_27505	COG1192	Involved in chromosome partitioning
FOC88_27525	COG2329	Antibiotic biosynthesis monooxygenase
FOC88_27550	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
FOC88_27650	COG4653	Phage capsid family
FOC88_27655	COG0338	D12 class N6 adenine-specific DNA methyltransferase
FOC88_27660	COG2369	cell adhesion
FOC88_27665	COG5518	Phage portal protein
FOC88_27685	COG5484	DNA packaging