BF38_1 SM00382 ATPases associated with a variety of cellular activities BF38_100 SM00954 Region found in RelA / SpoT proteins BF38_1011 SM00382 ATPases associated with a variety of cellular activities BF38_1012 SM00850 LytTr DNA-binding domain BF38_102 SM00098 Alkaline phosphatase homologues BF38_1029 SM00052 Putative diguanylate phosphodiesterase BF38_1029 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BF38_1029 SM00091 PAS domain BF38_1029 SM00267 diguanylate cyclase BF38_1033 SM00382 ATPases associated with a variety of cellular activities BF38_1046 SM00226 Low molecular weight phosphatase family BF38_1049 SM00903 Flavin reductase like domain BF38_1056 SM00937 BF38_1056 BF38_1059 SM00357 Cold shock protein domain BF38_1059 SM00382 ATPases associated with a variety of cellular activities BF38_1059 SM00959 Rho termination factor, N-terminal domain BF38_1063 SM00448 cheY-homologous receiver domain BF38_107 SM00855 Phosphoglycerate mutase family BF38_1073 SM00155 Phospholipase D. Active site motifs. BF38_1075 SM00052 Putative diguanylate phosphodiesterase BF38_1075 SM00267 diguanylate cyclase BF38_1077 SM00530 Helix-turn-helix XRE-family like proteins BF38_1078 SM00421 helix_turn_helix, Lux Regulon BF38_1087 SM00836 DALR anticodon binding domain BF38_1087 SM01016 Arginyl tRNA synthetase N terminal dom BF38_1095 SM00422 helix_turn_helix, mercury resistance BF38_11 SM01018 B12 binding domain BF38_1101 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF38_1103 SM00382 ATPases associated with a variety of cellular activities BF38_1112 SM00936 Penicillin-binding protein 5, C-terminal domain BF38_1121 SM00986 Uracil DNA glycosylase superfamily BF38_1121 SM00987 UreE urease accessory protein, C-terminal domain BF38_1123 SM00382 ATPases associated with a variety of cellular activities BF38_1125 SM00354 helix_turn _helix lactose operon repressor BF38_1132 SM00100 Cyclic nucleotide-monophosphate binding domain BF38_1134 SM00421 helix_turn_helix, Lux Regulon BF38_1134 SM00448 cheY-homologous receiver domain BF38_1135 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF38_1137 SM00267 diguanylate cyclase BF38_1140 SM00448 cheY-homologous receiver domain BF38_1140 SM00850 LytTr DNA-binding domain BF38_1146 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF38_1151 SM00382 ATPases associated with a variety of cellular activities BF38_116 SM00530 Helix-turn-helix XRE-family like proteins BF38_1162 SM00448 cheY-homologous receiver domain BF38_1162 SM00850 LytTr DNA-binding domain BF38_1163 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF38_1163 SM00387 Histidine kinase-like ATPases BF38_1174 SM00487 DEAD-like helicases superfamily BF38_1174 SM00490 helicase superfamily c-terminal domain BF38_1176 SM01240 BF38_1176 BF38_1181 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF38_1182 SM00849 Metallo-beta-lactamase superfamily BF38_1185 SM00091 PAS domain BF38_1185 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF38_1185 SM00387 Histidine kinase-like ATPases BF38_1185 SM00388 His Kinase A (phosphoacceptor) domain BF38_1186 SM00448 cheY-homologous receiver domain BF38_1186 SM00862 Transcriptional regulatory protein, C terminal BF38_1191 SM00788 Adenylosuccinate synthetase BF38_1194 SM00267 diguanylate cyclase BF38_1203 SM00470 ParB-like nuclease domain BF38_1205 SM00470 ParB-like nuclease domain BF38_1207 SM01228 BF38_1207 BF38_1209 SM00393 Putative single-stranded nucleic acids-binding domain BF38_1209 SM01245 BF38_1209 BF38_121 SM00382 ATPases associated with a variety of cellular activities BF38_1213 SM00382 ATPases associated with a variety of cellular activities BF38_1213 SM00760 Bacterial dnaA protein helix-turn-helix domain BF38_1214 SM00480 DNA polymerase III beta subunit BF38_1219 SM00434 DNA Topoisomerase IV BF38_1225 SM00116 Domain in cystathionine beta-synthase and other proteins. BF38_1225 SM01240 BF38_1225 BF38_1226 SM00936 Penicillin-binding protein 5, C-terminal domain BF38_1236 SM00382 ATPases associated with a variety of cellular activities BF38_1238 SM00493 BF38_1238 BF38_1256 SM00966 SpoVT / AbrB like domain BF38_1259 SM00493 BF38_1259 BF38_1260 SM00650 Ribosomal RNA adenine dimethylases BF38_1269 SM01400 BF38_1269 BF38_1273 SM00487 DEAD-like helicases superfamily BF38_1273 SM00490 helicase superfamily c-terminal domain BF38_1273 SM00982 BF38_1273 BF38_1273 SM01058 CarD-like/TRCF domain BF38_1274 SM00966 SpoVT / AbrB like domain BF38_1277 SM00363 S4 RNA-binding domain BF38_1281 SM00316 Ribosomal protein S1-like RNA-binding domain BF38_1284 SM00331 Sigma factor PP2C-like phosphatases BF38_1284 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BF38_1285 SM00977 TilS substrate C-terminal domain BF38_1287 SM00382 ATPases associated with a variety of cellular activities BF38_1295 SM00905 Dihydroneopterin aldolase BF38_1297 SM00530 Helix-turn-helix XRE-family like proteins BF38_1320 SM00382 ATPases associated with a variety of cellular activities BF38_1320 SM01086 C-terminal, D2-small domain, of ClpB protein BF38_1321 SM00382 ATPases associated with a variety of cellular activities BF38_1323 SM00670 Large family of predicted nucleotide-binding domains BF38_1328 SM00840 BF38_1328 BF38_1329 SM00535 Ribonuclease III family BF38_1330 SM00967 RNA 2'-O ribose methyltransferase substrate binding BF38_1332 SM00421 helix_turn_helix, Lux Regulon BF38_1334 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BF38_1335 SM00649 Ribosomal protein L11/L12 BF38_1341 SM00663 RNA polymerase I subunit A N-terminus BF38_1345 SM00838 Elongation factor G C-terminus BF38_1345 SM00889 Elongation factor G, domain IV BF38_1347 SM01403 BF38_1347 BF38_1351 SM01382 BF38_1351 BF38_1351 SM01383 BF38_1351 BF38_1354 SM00322 K homology RNA-binding domain BF38_1358 SM01374 BF38_1358 BF38_1359 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BF38_1371 SM00316 Ribosomal protein S1-like RNA-binding domain BF38_1375 SM00662 RNA polymerases D BF38_1377 SM00382 ATPases associated with a variety of cellular activities BF38_1378 SM00382 ATPases associated with a variety of cellular activities BF38_1384 SM00646 BF38_1384 BF38_1387 SM01251 BF38_1387 BF38_140 SM00732 Likely ribonuclease with RNase H fold. BF38_1410 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF38_1410 SM00895 BF38_1410 BF38_1413 SM01350 BF38_1413 BF38_142 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF38_1424 SM00382 ATPases associated with a variety of cellular activities BF38_1424 SM00930 BF38_1424 BF38_1426 SM00829 Enoylreductase BF38_1436 SM00382 ATPases associated with a variety of cellular activities BF38_1437 SM00382 ATPases associated with a variety of cellular activities BF38_1440 SM00342 helix_turn_helix, arabinose operon control protein BF38_1459 SM00563 Phosphate acyltransferases BF38_1461 SM00354 helix_turn _helix lactose operon repressor BF38_1471 SM00382 ATPases associated with a variety of cellular activities BF38_1472 SM00387 Histidine kinase-like ATPases BF38_1473 SM00421 helix_turn_helix, Lux Regulon BF38_1473 SM00448 cheY-homologous receiver domain BF38_1474 SM00382 ATPases associated with a variety of cellular activities BF38_1482 SM00382 ATPases associated with a variety of cellular activities BF38_1483 SM00382 ATPases associated with a variety of cellular activities BF38_149 SM00028 Tetratricopeptide repeats BF38_1495 SM00487 DEAD-like helicases superfamily BF38_1495 SM00490 helicase superfamily c-terminal domain BF38_1500 SM01005 Alanine racemase, C-terminal domain BF38_1503 SM00316 Ribosomal protein S1-like RNA-binding domain BF38_1503 SM00732 Likely ribonuclease with RNase H fold. BF38_1504 SM00731 SprT homologues. BF38_1526 SM00382 ATPases associated with a variety of cellular activities BF38_1527 SM00881 CoA binding domain BF38_153 SM00382 ATPases associated with a variety of cellular activities BF38_1530 SM00883 Chaperonin 10 Kd subunit BF38_1534 SM00448 cheY-homologous receiver domain BF38_1534 SM00862 Transcriptional regulatory protein, C terminal BF38_1535 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF38_1535 SM00387 Histidine kinase-like ATPases BF38_1535 SM00388 His Kinase A (phosphoacceptor) domain BF38_1560 SM00382 ATPases associated with a variety of cellular activities BF38_1561 SM00387 Histidine kinase-like ATPases BF38_1561 SM00388 His Kinase A (phosphoacceptor) domain BF38_1562 SM00448 cheY-homologous receiver domain BF38_1562 SM00862 Transcriptional regulatory protein, C terminal BF38_1573 SM01001 AIR carboxylase BF38_1575 SM00998 Adenylosuccinate lyase C-terminus BF38_1578 SM01211 BF38_1578 BF38_1583 SM00798 AICARFT/IMPCHase bienzyme BF38_1583 SM00851 MGS-like domain BF38_1584 SM01209 BF38_1584 BF38_1584 SM01210 BF38_1584 BF38_1586 SM00244 prohibitin homologues BF38_1590 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF38_1590 SM00292 breast cancer carboxy-terminal domain BF38_1590 SM00532 Ligase N family BF38_1596 SM00382 ATPases associated with a variety of cellular activities BF38_1596 SM00930 BF38_1596 BF38_16 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF38_1602 SM00347 helix_turn_helix multiple antibiotic resistance protein BF38_1606 SM00845 GatB domain BF38_1607 SM00046 Diacylglycerol kinase catalytic domain (presumed) BF38_161 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF38_161 SM00954 Region found in RelA / SpoT proteins BF38_1610 SM00382 ATPases associated with a variety of cellular activities BF38_1623 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BF38_1632 SM01007 Class II Aldolase and Adducin N-terminal domain BF38_1654 SM00062 Bacterial periplasmic substrate-binding proteins BF38_1654 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF38_1655 SM00382 ATPases associated with a variety of cellular activities BF38_1656 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF38_1656 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF38_1662 SM00100 Cyclic nucleotide-monophosphate binding domain BF38_1662 SM00419 helix_turn_helix, cAMP Regulatory protein BF38_1664 SM00642 Alpha-amylase domain BF38_1668 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF38_1668 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF38_1668 SM00493 BF38_1668 BF38_1672 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF38_1672 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF38_1676 SM00382 ATPases associated with a variety of cellular activities BF38_1677 SM00382 ATPases associated with a variety of cellular activities BF38_1678 SM00060 Fibronectin type 3 domain BF38_1678 SM00636 BF38_1678 BF38_1678 SM00637 BF38_1678 BF38_1686 SM00530 Helix-turn-helix XRE-family like proteins BF38_1691 SM00946 Prolyl-tRNA synthetase, C-terminal BF38_170 SM01323 BF38_170 BF38_1700 SM00831 Cation transporter/ATPase, N-terminus BF38_1702 SM00226 Low molecular weight phosphatase family BF38_1721 SM00478 endonuclease III BF38_1726 SM00530 Helix-turn-helix XRE-family like proteins BF38_1736 SM00984 UDP binding domain BF38_174 SM00382 ATPases associated with a variety of cellular activities BF38_175 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF38_1752 SM00478 endonuclease III BF38_1752 SM00525 BF38_1752 BF38_1757 SM00382 ATPases associated with a variety of cellular activities BF38_1761 SM00382 ATPases associated with a variety of cellular activities BF38_1793 SM00567 E-Z type HEAT repeats BF38_1796 SM00052 Putative diguanylate phosphodiesterase BF38_1796 SM00091 PAS domain BF38_1796 SM00267 diguanylate cyclase BF38_1798 SM00763 PrkA AAA domain BF38_18 SM00849 Metallo-beta-lactamase superfamily BF38_180 SM00257 Lysin motif BF38_1800 SM00365 Leucine-rich repeat, SDS22-like subfamily BF38_1800 SM00369 Leucine-rich repeats, typical (most populated) subfamily BF38_1800 SM00725 NEAr Transporter domain BF38_1804 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BF38_1806 SM00244 prohibitin homologues BF38_1807 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF38_1807 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF38_1808 SM00091 PAS domain BF38_1808 SM00387 Histidine kinase-like ATPases BF38_1809 SM00448 cheY-homologous receiver domain BF38_1813 SM00248 ankyrin repeats BF38_1815 SM00382 ATPases associated with a variety of cellular activities BF38_1820 SM00448 cheY-homologous receiver domain BF38_1820 SM00862 Transcriptional regulatory protein, C terminal BF38_1821 SM00387 Histidine kinase-like ATPases BF38_1821 SM00388 His Kinase A (phosphoacceptor) domain BF38_1824 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF38_1824 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF38_1825 SM00387 Histidine kinase-like ATPases BF38_1826 SM00448 cheY-homologous receiver domain BF38_1828 SM00919 Malic enzyme, NAD binding domain BF38_1828 SM01274 BF38_1828 BF38_1831 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF38_1833 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF38_1833 SM00387 Histidine kinase-like ATPases BF38_1833 SM00388 His Kinase A (phosphoacceptor) domain BF38_1834 SM00448 cheY-homologous receiver domain BF38_1834 SM00862 Transcriptional regulatory protein, C terminal BF38_1838 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BF38_1838 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF38_1841 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BF38_1841 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BF38_1843 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF38_1846 SM00028 Tetratricopeptide repeats BF38_1846 SM00530 Helix-turn-helix XRE-family like proteins BF38_1856 SM01091 Transporter associated domain BF38_1859 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF38_1865 SM00382 ATPases associated with a variety of cellular activities BF38_1870 SM00327 von Willebrand factor (vWF) type A domain BF38_1871 SM00382 ATPases associated with a variety of cellular activities BF38_1872 SM00155 Phospholipase D. Active site motifs. BF38_1875 SM00052 Putative diguanylate phosphodiesterase BF38_1875 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BF38_1875 SM00091 PAS domain BF38_1875 SM00267 diguanylate cyclase BF38_1877 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF38_1877 SM00866 BF38_1877 BF38_1879 SM00642 Alpha-amylase domain BF38_1886 SM00382 ATPases associated with a variety of cellular activities BF38_1887 SM00062 Bacterial periplasmic substrate-binding proteins BF38_1887 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF38_1897 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF38_1897 SM00387 Histidine kinase-like ATPases BF38_1897 SM00388 His Kinase A (phosphoacceptor) domain BF38_1898 SM00448 cheY-homologous receiver domain BF38_1898 SM00862 Transcriptional regulatory protein, C terminal BF38_190 SM00382 ATPases associated with a variety of cellular activities BF38_1906 SM00382 ATPases associated with a variety of cellular activities BF38_1907 SM00382 ATPases associated with a variety of cellular activities BF38_1909 SM00347 helix_turn_helix multiple antibiotic resistance protein BF38_191 SM00387 Histidine kinase-like ATPases BF38_1911 SM00354 helix_turn _helix lactose operon repressor BF38_1914 SM00382 ATPases associated with a variety of cellular activities BF38_192 SM00448 cheY-homologous receiver domain BF38_192 SM00862 Transcriptional regulatory protein, C terminal BF38_1920 SM00829 Enoylreductase BF38_1922 SM00770 Zinc dependent phospholipase C (alpha toxin) BF38_1929 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF38_1931 SM00530 Helix-turn-helix XRE-family like proteins BF38_194 SM01317 BF38_194 BF38_1940 SM00530 Helix-turn-helix XRE-family like proteins BF38_1958 SM00899 BF38_1958 BF38_1988 SM00116 Domain in cystathionine beta-synthase and other proteins. BF38_1991 SM00287 Bacterial SH3 domain homologues BF38_1993 SM00382 ATPases associated with a variety of cellular activities BF38_2010 SM00347 helix_turn_helix multiple antibiotic resistance protein BF38_2031 SM00450 Rhodanese Homology Domain BF38_2033 SM00450 Rhodanese Homology Domain BF38_2034 SM00450 Rhodanese Homology Domain BF38_2034 SM00849 Metallo-beta-lactamase superfamily BF38_2036 SM00450 Rhodanese Homology Domain BF38_2037 SM00450 Rhodanese Homology Domain BF38_2052 SM00287 Bacterial SH3 domain homologues BF38_2054 SM00382 ATPases associated with a variety of cellular activities BF38_2065 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen BF38_2085 SM00344 helix_turn_helix ASNC type BF38_2099 SM01060 BF38_2099 BF38_2105 SM00382 ATPases associated with a variety of cellular activities BF38_2106 SM00382 ATPases associated with a variety of cellular activities BF38_2107 SM00062 Bacterial periplasmic substrate-binding proteins BF38_2107 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF38_2109 SM00382 ATPases associated with a variety of cellular activities BF38_212 SM00257 Lysin motif BF38_2123 SM00644 BF38_2123 BF38_2124 SM00729 Elongator protein 3, MiaB family, Radical SAM BF38_2131 SM00957 SecA DEAD-like domain BF38_2131 SM00958 SecA preprotein cross-linking domain BF38_2134 SM00635 Bacterial Ig-like domain 2 BF38_214 SM01004 Delta-aminolevulinic acid dehydratase BF38_2146 SM00646 BF38_2146 BF38_2158 SM00382 ATPases associated with a variety of cellular activities BF38_2159 SM00382 ATPases associated with a variety of cellular activities BF38_2163 SM00091 PAS domain BF38_2163 SM00387 Histidine kinase-like ATPases BF38_2164 SM00448 cheY-homologous receiver domain BF38_2180 SM00422 helix_turn_helix, mercury resistance BF38_219 SM00347 helix_turn_helix multiple antibiotic resistance protein BF38_2203 SM00347 helix_turn_helix multiple antibiotic resistance protein BF38_2212 SM01120 BF38_2212 BF38_2214 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF38_2218 SM00460 Transglutaminase/protease-like homologues BF38_222 SM00382 ATPases associated with a variety of cellular activities BF38_222 SM00464 Found in ATP-dependent protease La (LON) BF38_223 SM00382 ATPases associated with a variety of cellular activities BF38_2231 SM00331 Sigma factor PP2C-like phosphatases BF38_2231 SM00448 cheY-homologous receiver domain BF38_2232 SM00138 Methyltransferase, chemotaxis proteins BF38_2233 SM00387 Histidine kinase-like ATPases BF38_2233 SM00388 His Kinase A (phosphoacceptor) domain BF38_2233 SM00448 cheY-homologous receiver domain BF38_224 SM00382 ATPases associated with a variety of cellular activities BF38_224 SM00994 ClpX C4-type zinc finger BF38_224 SM01086 C-terminal, D2-small domain, of ClpB protein BF38_2241 SM00829 Enoylreductase BF38_2248 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF38_2256 SM00028 Tetratricopeptide repeats BF38_2261 SM00530 Helix-turn-helix XRE-family like proteins BF38_2271 SM00347 helix_turn_helix multiple antibiotic resistance protein BF38_2280 SM00347 helix_turn_helix multiple antibiotic resistance protein BF38_2283 SM00382 ATPases associated with a variety of cellular activities BF38_2305 SM00422 helix_turn_helix, mercury resistance BF38_2326 SM00354 helix_turn _helix lactose operon repressor BF38_2328 SM00849 Metallo-beta-lactamase superfamily BF38_2333 SM00725 NEAr Transporter domain BF38_2338 SM00860 SMI1 / KNR4 family BF38_2343 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF38_2346 SM00342 helix_turn_helix, arabinose operon control protein BF38_2346 SM00871 Bacterial transcription activator, effector binding domain BF38_2349 SM00387 Histidine kinase-like ATPases BF38_2349 SM00388 His Kinase A (phosphoacceptor) domain BF38_2350 SM00448 cheY-homologous receiver domain BF38_2350 SM00862 Transcriptional regulatory protein, C terminal BF38_2355 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF38_2355 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF38_2363 SM00357 Cold shock protein domain BF38_237 SM00909 Sporulation and spore germination BF38_2387 SM01060 BF38_2387 BF38_2389 SM00642 Alpha-amylase domain BF38_2390 SM00530 Helix-turn-helix XRE-family like proteins BF38_2392 SM00316 Ribosomal protein S1-like RNA-binding domain BF38_2402 SM00382 ATPases associated with a variety of cellular activities BF38_2402 SM01086 C-terminal, D2-small domain, of ClpB protein BF38_2408 SM00825 Beta-ketoacyl synthase BF38_2416 SM00382 ATPases associated with a variety of cellular activities BF38_2417 SM00382 ATPases associated with a variety of cellular activities BF38_2424 SM00155 Phospholipase D. Active site motifs. BF38_2430 SM01118 BF38_2430 BF38_2432 SM00954 Region found in RelA / SpoT proteins BF38_244 SM00421 helix_turn_helix, Lux Regulon BF38_2462 SM00635 Bacterial Ig-like domain 2 BF38_2484 SM00861 Transketolase, pyrimidine binding domain BF38_2485 SM00530 Helix-turn-helix XRE-family like proteins BF38_2503 SM00530 Helix-turn-helix XRE-family like proteins BF38_2506 SM00382 ATPases associated with a variety of cellular activities BF38_2510 SM00014 Acid phosphatase homologues BF38_252 SM00382 ATPases associated with a variety of cellular activities BF38_2520 SM00448 cheY-homologous receiver domain BF38_2520 SM00862 Transcriptional regulatory protein, C terminal BF38_2521 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF38_2521 SM00387 Histidine kinase-like ATPases BF38_2521 SM00388 His Kinase A (phosphoacceptor) domain BF38_2522 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF38_2522 SM00895 BF38_2522 BF38_253 SM00382 ATPases associated with a variety of cellular activities BF38_2536 SM00822 BF38_2536 BF38_2543 SM00382 ATPases associated with a variety of cellular activities BF38_2548 SM00420 helix_turn_helix, Deoxyribose operon repressor BF38_2548 SM01134 BF38_2548 BF38_255 SM00342 helix_turn_helix, arabinose operon control protein BF38_255 SM00448 cheY-homologous receiver domain BF38_2550 SM00365 Leucine-rich repeat, SDS22-like subfamily BF38_2550 SM00369 Leucine-rich repeats, typical (most populated) subfamily BF38_2550 SM00725 NEAr Transporter domain BF38_2551 SM01007 Class II Aldolase and Adducin N-terminal domain BF38_2555 SM00387 Histidine kinase-like ATPases BF38_2555 SM00388 His Kinase A (phosphoacceptor) domain BF38_2556 SM00347 helix_turn_helix multiple antibiotic resistance protein BF38_2560 SM00387 Histidine kinase-like ATPases BF38_2560 SM00388 His Kinase A (phosphoacceptor) domain BF38_2573 SM00465 GIY-YIG type nucleases (URI domain) BF38_2573 SM00496 Intron-encoded nuclease repeat 2 BF38_2576 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF38_2577 SM00382 ATPases associated with a variety of cellular activities BF38_2579 SM00382 ATPases associated with a variety of cellular activities BF38_258 SM00530 Helix-turn-helix XRE-family like proteins BF38_2583 SM00344 helix_turn_helix ASNC type BF38_26 SM00382 ATPases associated with a variety of cellular activities BF38_2607 SM00347 helix_turn_helix multiple antibiotic resistance protein BF38_2620 SM00917 LeuA allosteric (dimerisation) domain BF38_2621 SM01329 BF38_2621 BF38_263 SM00382 ATPases associated with a variety of cellular activities BF38_2657 SM00387 Histidine kinase-like ATPases BF38_2658 SM00421 helix_turn_helix, Lux Regulon BF38_2658 SM00448 cheY-homologous receiver domain BF38_2676 SM00091 PAS domain BF38_2676 SM00387 Histidine kinase-like ATPases BF38_2676 SM00388 His Kinase A (phosphoacceptor) domain BF38_2680 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF38_2680 SM00387 Histidine kinase-like ATPases BF38_2680 SM00388 His Kinase A (phosphoacceptor) domain BF38_2691 SM00363 S4 RNA-binding domain BF38_2695 SM00448 cheY-homologous receiver domain BF38_2695 SM00862 Transcriptional regulatory protein, C terminal BF38_2696 SM00091 PAS domain BF38_2696 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF38_2696 SM00387 Histidine kinase-like ATPases BF38_2696 SM00388 His Kinase A (phosphoacceptor) domain BF38_2698 SM00257 Lysin motif BF38_2703 SM00487 DEAD-like helicases superfamily BF38_2703 SM00490 helicase superfamily c-terminal domain BF38_2705 SM00257 Lysin motif BF38_2707 SM00422 helix_turn_helix, mercury resistance BF38_2709 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF38_2712 SM00644 BF38_2712 BF38_2714 SM00870 BF38_2714 BF38_2717 SM00316 Ribosomal protein S1-like RNA-binding domain BF38_2718 SM01240 BF38_2718 BF38_2729 SM00411 bacterial (prokaryotic) histone like domain BF38_273 SM00465 GIY-YIG type nucleases (URI domain) BF38_2734 SM00562 BF38_2734 BF38_2738 SM00028 Tetratricopeptide repeats BF38_2739 SM00914 BF38_2739 BF38_2748 SM00986 Uracil DNA glycosylase superfamily BF38_2748 SM00987 UreE urease accessory protein, C-terminal domain BF38_275 SM00893 Electron transfer flavoprotein domain BF38_2752 SM00851 MGS-like domain BF38_276 SM00893 Electron transfer flavoprotein domain BF38_2761 SM00479 BF38_2761 BF38_2761 SM00491 BF38_2761 BF38_2766 SM00478 endonuclease III BF38_2766 SM00525 BF38_2766 BF38_2768 SM00060 Fibronectin type 3 domain BF38_2779 SM00981 BF38_2779 BF38_2781 SM00491 BF38_2781 BF38_2794 SM00450 Rhodanese Homology Domain BF38_2800 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BF38_2800 SM00475 5'-3' exonuclease BF38_2823 SM00357 Cold shock protein domain BF38_2833 SM00849 Metallo-beta-lactamase superfamily BF38_2834 SM00422 helix_turn_helix, mercury resistance BF38_2834 SM00871 Bacterial transcription activator, effector binding domain BF38_2852 SM00448 cheY-homologous receiver domain BF38_2853 SM00073 Histidine Phosphotransfer domain BF38_2853 SM00260 Two component signalling adaptor domain BF38_2853 SM00387 Histidine kinase-like ATPases BF38_2853 SM01231 BF38_2853 BF38_2857 SM00138 Methyltransferase, chemotaxis proteins BF38_2872 SM00382 ATPases associated with a variety of cellular activities BF38_2879 SM00260 Two component signalling adaptor domain BF38_2879 SM00448 cheY-homologous receiver domain BF38_288 SM00382 ATPases associated with a variety of cellular activities BF38_289 SM00387 Histidine kinase-like ATPases BF38_289 SM00388 His Kinase A (phosphoacceptor) domain BF38_2893 SM00382 ATPases associated with a variety of cellular activities BF38_2893 SM00962 SRP54-type protein, GTPase domain BF38_2895 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF38_290 SM00448 cheY-homologous receiver domain BF38_290 SM00862 Transcriptional regulatory protein, C terminal BF38_2904 SM00530 Helix-turn-helix XRE-family like proteins BF38_2908 SM00382 ATPases associated with a variety of cellular activities BF38_2911 SM00849 Metallo-beta-lactamase superfamily BF38_2911 SM01027 Beta-Casp domain BF38_2915 SM00835 Cupin BF38_2918 SM00855 Phosphoglycerate mutase family BF38_2922 SM00347 helix_turn_helix multiple antibiotic resistance protein BF38_293 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BF38_2930 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF38_2930 SM00895 BF38_2930 BF38_2932 SM00833 Cobalamin synthesis protein cobW C-terminal domain BF38_2937 SM00422 helix_turn_helix, mercury resistance BF38_2951 SM00530 Helix-turn-helix XRE-family like proteins BF38_2959 SM00421 helix_turn_helix, Lux Regulon BF38_2959 SM00448 cheY-homologous receiver domain BF38_2961 SM00382 ATPases associated with a variety of cellular activities BF38_2964 SM00155 Phospholipase D. Active site motifs. BF38_2968 SM00919 Malic enzyme, NAD binding domain BF38_2968 SM01274 BF38_2968 BF38_2969 SM00387 Histidine kinase-like ATPases BF38_297 SM00382 ATPases associated with a variety of cellular activities BF38_2970 SM00448 cheY-homologous receiver domain BF38_2971 SM00487 DEAD-like helicases superfamily BF38_2971 SM00490 helicase superfamily c-terminal domain BF38_2982 SM00646 BF38_2982 BF38_2983 SM00047 Lysozyme subfamily 2 BF38_300 SM00725 NEAr Transporter domain BF38_301 SM00725 NEAr Transporter domain BF38_3015 SM00854 Bacterial capsule synthesis protein PGA_cap BF38_302 SM00725 NEAr Transporter domain BF38_3021 SM00850 LytTr DNA-binding domain BF38_3030 SM00530 Helix-turn-helix XRE-family like proteins BF38_3033 SM00530 Helix-turn-helix XRE-family like proteins BF38_3035 SM00530 Helix-turn-helix XRE-family like proteins BF38_304 SM00363 S4 RNA-binding domain BF38_3040 SM00382 ATPases associated with a variety of cellular activities BF38_306 SM00463 Small MutS-related domain BF38_306 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BF38_306 SM00534 ATPase domain of DNA mismatch repair MUTS family BF38_3061 SM00843 BF38_3061 BF38_3068 SM00507 HNH nucleases BF38_307 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF38_307 SM00481 DNA polymerase alpha chain like domain BF38_307 SM00483 DNA polymerase X family BF38_3088 SM00530 Helix-turn-helix XRE-family like proteins BF38_3097 SM00729 Elongator protein 3, MiaB family, Radical SAM BF38_3099 SM00448 cheY-homologous receiver domain BF38_3099 SM00862 Transcriptional regulatory protein, C terminal BF38_3100 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF38_3100 SM00387 Histidine kinase-like ATPases BF38_3100 SM00388 His Kinase A (phosphoacceptor) domain BF38_3103 SM00450 Rhodanese Homology Domain BF38_3113 SM01133 BF38_3113 BF38_3115 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BF38_3121 SM01011 Aminopeptidase P, N-terminal domain BF38_3123 SM00287 Bacterial SH3 domain homologues BF38_3125 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF38_3125 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF38_3125 SM00493 BF38_3125 BF38_3144 SM00833 Cobalamin synthesis protein cobW C-terminal domain BF38_315 SM00873 B3/4 domain BF38_315 SM00874 tRNA synthetase B5 domain BF38_315 SM00896 Ferredoxin-fold anticodon binding domain BF38_3151 SM00382 ATPases associated with a variety of cellular activities BF38_3152 SM00382 ATPases associated with a variety of cellular activities BF38_3159 SM00347 helix_turn_helix multiple antibiotic resistance protein BF38_3163 SM00382 ATPases associated with a variety of cellular activities BF38_3164 SM00382 ATPases associated with a variety of cellular activities BF38_317 SM00967 RNA 2'-O ribose methyltransferase substrate binding BF38_3170 SM00287 Bacterial SH3 domain homologues BF38_3172 SM00382 ATPases associated with a variety of cellular activities BF38_3173 SM00448 cheY-homologous receiver domain BF38_3173 SM00862 Transcriptional regulatory protein, C terminal BF38_3174 SM00387 Histidine kinase-like ATPases BF38_3174 SM00388 His Kinase A (phosphoacceptor) domain BF38_3189 SM00448 cheY-homologous receiver domain BF38_3189 SM00862 Transcriptional regulatory protein, C terminal BF38_3190 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF38_3190 SM00387 Histidine kinase-like ATPases BF38_3190 SM00388 His Kinase A (phosphoacceptor) domain BF38_3208 SM00460 Transglutaminase/protease-like homologues BF38_3213 SM00966 SpoVT / AbrB like domain BF38_3217 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF38_3224 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF38_3224 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF38_3236 SM00833 Cobalamin synthesis protein cobW C-terminal domain BF38_3256 SM00855 Phosphoglycerate mutase family BF38_3266 SM00155 Phospholipase D. Active site motifs. BF38_3271 SM01091 Transporter associated domain BF38_3286 SM00244 prohibitin homologues BF38_3287 SM00855 Phosphoglycerate mutase family BF38_3290 SM01005 Alanine racemase, C-terminal domain BF38_3296 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF38_332 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF38_3323 SM00487 DEAD-like helicases superfamily BF38_3323 SM00490 helicase superfamily c-terminal domain BF38_3327 SM00829 Enoylreductase BF38_3332 SM00849 Metallo-beta-lactamase superfamily BF38_3335 SM00460 Transglutaminase/protease-like homologues BF38_3338 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BF38_334 SM00382 ATPases associated with a variety of cellular activities BF38_3351 SM00100 Cyclic nucleotide-monophosphate binding domain BF38_3351 SM00419 helix_turn_helix, cAMP Regulatory protein BF38_3352 SM00729 Elongator protein 3, MiaB family, Radical SAM BF38_3354 SM00852 Probable molybdopterin binding domain BF38_3366 SM00894 Excalibur calcium-binding domain BF38_3375 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF38_3376 SM00382 ATPases associated with a variety of cellular activities BF38_338 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF38_3380 SM00567 E-Z type HEAT repeats BF38_3380 SM00932 Scaffold protein Nfu/NifU N terminal BF38_3384 SM00836 DALR anticodon binding domain BF38_3384 SM01016 Arginyl tRNA synthetase N terminal dom BF38_3388 SM00028 Tetratricopeptide repeats BF38_3394 SM00327 von Willebrand factor (vWF) type A domain BF38_3397 SM00382 ATPases associated with a variety of cellular activities BF38_3399 SM00028 Tetratricopeptide repeats BF38_341 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BF38_341 SM01232 BF38_341 BF38_3417 SM00448 cheY-homologous receiver domain BF38_3417 SM00862 Transcriptional regulatory protein, C terminal BF38_3418 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF38_3418 SM00387 Histidine kinase-like ATPases BF38_3418 SM00388 His Kinase A (phosphoacceptor) domain BF38_342 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BF38_342 SM00474 3'-5' exonuclease BF38_342 SM00475 5'-3' exonuclease BF38_342 SM00482 DNA polymerase A domain BF38_343 SM00091 PAS domain BF38_343 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF38_343 SM00387 Histidine kinase-like ATPases BF38_343 SM00388 His Kinase A (phosphoacceptor) domain BF38_3433 SM00382 ATPases associated with a variety of cellular activities BF38_344 SM00448 cheY-homologous receiver domain BF38_344 SM00862 Transcriptional regulatory protein, C terminal BF38_3444 SM00563 Phosphate acyltransferases BF38_3466 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BF38_3467 SM00421 helix_turn_helix, Lux Regulon BF38_3467 SM00448 cheY-homologous receiver domain BF38_3470 SM00829 Enoylreductase BF38_3482 SM00382 ATPases associated with a variety of cellular activities BF38_349 SM01329 BF38_349 BF38_3490 SM01091 Transporter associated domain BF38_3493 SM00387 Histidine kinase-like ATPases BF38_3493 SM00388 His Kinase A (phosphoacceptor) domain BF38_3496 SM00882 Coenzyme A transferase BF38_3497 SM00882 Coenzyme A transferase BF38_3500 SM00382 ATPases associated with a variety of cellular activities BF38_3508 SM00219 Tyrosine kinase, catalytic domain BF38_3511 SM00014 Acid phosphatase homologues BF38_3513 SM00860 SMI1 / KNR4 family BF38_3523 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. BF38_3550 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF38_3557 SM00823 Phosphopantetheine attachment site BF38_3557 SM00824 Thioesterase BF38_3558 SM00923 MbtH-like protein BF38_3562 SM00411 bacterial (prokaryotic) histone like domain BF38_3570 SM00363 S4 RNA-binding domain BF38_3571 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF38_3572 SM00382 ATPases associated with a variety of cellular activities BF38_3579 SM00849 Metallo-beta-lactamase superfamily BF38_358 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF38_3585 SM00849 Metallo-beta-lactamase superfamily BF38_3589 SM01059 Chloramphenicol acetyltransferase BF38_359 SM00919 Malic enzyme, NAD binding domain BF38_359 SM01274 BF38_359 BF38_3593 SM00530 Helix-turn-helix XRE-family like proteins BF38_360 SM00481 DNA polymerase alpha chain like domain BF38_3601 SM00357 Cold shock protein domain BF38_3613 SM00859 Semialdehyde dehydrogenase, NAD binding domain BF38_3620 SM00382 ATPases associated with a variety of cellular activities BF38_3621 SM00382 ATPases associated with a variety of cellular activities BF38_3623 SM00646 BF38_3623 BF38_3625 SM00530 Helix-turn-helix XRE-family like proteins BF38_3631 SM00835 Cupin BF38_3632 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF38_3647 SM01207 BF38_3647 BF38_3653 SM00849 Metallo-beta-lactamase superfamily BF38_3656 SM00487 DEAD-like helicases superfamily BF38_3656 SM00490 helicase superfamily c-terminal domain BF38_367 SM00116 Domain in cystathionine beta-synthase and other proteins. BF38_3674 SM00382 ATPases associated with a variety of cellular activities BF38_3679 SM00347 helix_turn_helix multiple antibiotic resistance protein BF38_3680 SM00855 Phosphoglycerate mutase family BF38_369 SM00849 Metallo-beta-lactamase superfamily BF38_3694 SM00014 Acid phosphatase homologues BF38_3695 SM00354 helix_turn _helix lactose operon repressor BF38_3709 SM00530 Helix-turn-helix XRE-family like proteins BF38_3714 SM00646 BF38_3714 BF38_3717 SM00382 ATPases associated with a variety of cellular activities BF38_3718 SM00052 Putative diguanylate phosphodiesterase BF38_3718 SM00091 PAS domain BF38_3718 SM00267 diguanylate cyclase BF38_3721 SM00450 Rhodanese Homology Domain BF38_3721 SM00849 Metallo-beta-lactamase superfamily BF38_3724 SM00382 ATPases associated with a variety of cellular activities BF38_3730 SM00878 Biotin carboxylase C-terminal domain BF38_3742 SM00387 Histidine kinase-like ATPases BF38_3742 SM00388 His Kinase A (phosphoacceptor) domain BF38_3743 SM00448 cheY-homologous receiver domain BF38_3743 SM00862 Transcriptional regulatory protein, C terminal BF38_3758 SM00422 helix_turn_helix, mercury resistance BF38_3758 SM00871 Bacterial transcription activator, effector binding domain BF38_3764 SM00342 helix_turn_helix, arabinose operon control protein BF38_3767 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF38_3779 SM00448 cheY-homologous receiver domain BF38_3779 SM00862 Transcriptional regulatory protein, C terminal BF38_3780 SM00387 Histidine kinase-like ATPases BF38_3782 SM00382 ATPases associated with a variety of cellular activities BF38_3785 SM00382 ATPases associated with a variety of cellular activities BF38_3791 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF38_3792 SM01209 BF38_3792 BF38_3815 SM00091 PAS domain BF38_3815 SM00387 Histidine kinase-like ATPases BF38_3815 SM00388 His Kinase A (phosphoacceptor) domain BF38_382 SM00530 Helix-turn-helix XRE-family like proteins BF38_3820 SM00382 ATPases associated with a variety of cellular activities BF38_3823 SM00387 Histidine kinase-like ATPases BF38_3823 SM00388 His Kinase A (phosphoacceptor) domain BF38_3826 SM00829 Enoylreductase BF38_3827 SM00740 BF38_3827 BF38_384 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BF38_384 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BF38_3840 SM00422 helix_turn_helix, mercury resistance BF38_3848 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF38_3861 SM00480 DNA polymerase III beta subunit BF38_3882 SM00465 GIY-YIG type nucleases (URI domain) BF38_39 SM00382 ATPases associated with a variety of cellular activities BF38_3903 SM00642 Alpha-amylase domain BF38_3907 SM00871 Bacterial transcription activator, effector binding domain BF38_3911 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF38_3935 SM00382 ATPases associated with a variety of cellular activities BF38_3939 SM00420 helix_turn_helix, Deoxyribose operon repressor BF38_3939 SM01134 BF38_3939 BF38_3945 SM00861 Transketolase, pyrimidine binding domain BF38_3957 SM00116 Domain in cystathionine beta-synthase and other proteins. BF38_3957 SM00382 ATPases associated with a variety of cellular activities BF38_3964 SM00060 Fibronectin type 3 domain BF38_3964 SM00495 Chitin-binding domain type 3 BF38_3972 SM00849 Metallo-beta-lactamase superfamily BF38_3986 SM00341 Helicase and RNase D C-terminal BF38_3986 SM00487 DEAD-like helicases superfamily BF38_3986 SM00490 helicase superfamily c-terminal domain BF38_3986 SM00956 BF38_3986 BF38_3994 SM01131 BF38_3994 BF38_4000 SM01130 BF38_4000 BF38_4004 SM00091 PAS domain BF38_4004 SM00382 ATPases associated with a variety of cellular activities BF38_4018 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BF38_4025 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain BF38_4026 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF38_4026 SM00387 Histidine kinase-like ATPases BF38_4026 SM00388 His Kinase A (phosphoacceptor) domain BF38_4027 SM00448 cheY-homologous receiver domain BF38_4027 SM00862 Transcriptional regulatory protein, C terminal BF38_4065 SM00382 ATPases associated with a variety of cellular activities BF38_4066 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF38_4078 SM00062 Bacterial periplasmic substrate-binding proteins BF38_4079 SM00382 ATPases associated with a variety of cellular activities BF38_4085 SM00028 Tetratricopeptide repeats BF38_409 SM00981 BF38_409 BF38_4103 SM00382 ATPases associated with a variety of cellular activities BF38_4112 SM00830 Chorismate mutase type II BF38_4119 SM00287 Bacterial SH3 domain homologues BF38_4124 SM00091 PAS domain BF38_4124 SM00382 ATPases associated with a variety of cellular activities BF38_4131 SM00382 ATPases associated with a variety of cellular activities BF38_4135 SM01133 BF38_4135 BF38_4141 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF38_4145 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BF38_4150 SM00346 helix_turn_helix isocitrate lyase regulation BF38_4154 SM00098 Alkaline phosphatase homologues BF38_4156 SM00530 Helix-turn-helix XRE-family like proteins BF38_4161 SM00850 LytTr DNA-binding domain BF38_417 SM00363 S4 RNA-binding domain BF38_417 SM01390 BF38_417 BF38_4181 SM01060 BF38_4181 BF38_4188 SM00382 ATPases associated with a variety of cellular activities BF38_4191 SM00347 helix_turn_helix multiple antibiotic resistance protein BF38_4192 SM00889 Elongation factor G, domain IV BF38_42 SM00518 AP endonuclease family 2 BF38_420 SM00363 S4 RNA-binding domain BF38_4206 SM00855 Phosphoglycerate mutase family BF38_4209 SM00422 helix_turn_helix, mercury resistance BF38_4217 SM00382 ATPases associated with a variety of cellular activities BF38_4218 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF38_4220 SM00382 ATPases associated with a variety of cellular activities BF38_4225 SM00342 helix_turn_helix, arabinose operon control protein BF38_4225 SM00871 Bacterial transcription activator, effector binding domain BF38_4230 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF38_4256 SM00797 Allophanate hydrolase subunit 2 BF38_4257 SM00796 Allophanate hydrolase subunit 1 BF38_4258 SM00346 helix_turn_helix isocitrate lyase regulation BF38_426 SM00116 Domain in cystathionine beta-synthase and other proteins. BF38_4262 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF38_4276 SM00849 Metallo-beta-lactamase superfamily BF38_4292 SM00870 BF38_4292 BF38_4293 SM00530 Helix-turn-helix XRE-family like proteins BF38_4298 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BF38_4298 SM00091 PAS domain BF38_4298 SM00387 Histidine kinase-like ATPases BF38_4298 SM00388 His Kinase A (phosphoacceptor) domain BF38_43 SM00487 DEAD-like helicases superfamily BF38_43 SM00490 helicase superfamily c-terminal domain BF38_430 SM00448 cheY-homologous receiver domain BF38_430 SM00862 Transcriptional regulatory protein, C terminal BF38_4303 SM00342 helix_turn_helix, arabinose operon control protein BF38_4304 SM00465 GIY-YIG type nucleases (URI domain) BF38_431 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF38_431 SM00387 Histidine kinase-like ATPases BF38_431 SM00388 His Kinase A (phosphoacceptor) domain BF38_4313 SM00448 cheY-homologous receiver domain BF38_4314 SM00387 Histidine kinase-like ATPases BF38_4319 SM01060 BF38_4319 BF38_432 SM00248 ankyrin repeats BF38_4343 SM00421 helix_turn_helix, Lux Regulon BF38_4347 SM00226 Low molecular weight phosphatase family BF38_4350 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF38_4354 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF38_4354 SM00387 Histidine kinase-like ATPases BF38_4354 SM00388 His Kinase A (phosphoacceptor) domain BF38_4355 SM00448 cheY-homologous receiver domain BF38_4355 SM00862 Transcriptional regulatory protein, C terminal BF38_4360 SM00344 helix_turn_helix ASNC type BF38_4366 SM00342 helix_turn_helix, arabinose operon control protein BF38_4371 SM00347 helix_turn_helix multiple antibiotic resistance protein BF38_4378 SM00448 cheY-homologous receiver domain BF38_4378 SM00862 Transcriptional regulatory protein, C terminal BF38_4379 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF38_4379 SM00387 Histidine kinase-like ATPases BF38_4379 SM00388 His Kinase A (phosphoacceptor) domain BF38_4389 SM00849 Metallo-beta-lactamase superfamily BF38_439 SM00354 helix_turn _helix lactose operon repressor BF38_4397 SM00422 helix_turn_helix, mercury resistance BF38_4402 SM00382 ATPases associated with a variety of cellular activities BF38_4404 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF38_4406 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF38_4406 SM00387 Histidine kinase-like ATPases BF38_4406 SM00388 His Kinase A (phosphoacceptor) domain BF38_4407 SM00448 cheY-homologous receiver domain BF38_4407 SM00862 Transcriptional regulatory protein, C terminal BF38_4423 SM00354 helix_turn _helix lactose operon repressor BF38_4424 SM00028 Tetratricopeptide repeats BF38_4431 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF38_4431 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF38_4431 SM00319 Homologues of the ligand binding domain of Tar BF38_4441 SM00344 helix_turn_helix ASNC type BF38_4450 SM00342 helix_turn_helix, arabinose operon control protein BF38_4454 SM00287 Bacterial SH3 domain homologues BF38_4454 SM00644 BF38_4454 BF38_4464 SM00347 helix_turn_helix multiple antibiotic resistance protein BF38_4479 SM00382 ATPases associated with a variety of cellular activities BF38_449 SM00422 helix_turn_helix, mercury resistance BF38_4490 SM00530 Helix-turn-helix XRE-family like proteins BF38_4502 SM00382 ATPases associated with a variety of cellular activities BF38_4505 SM00530 Helix-turn-helix XRE-family like proteins BF38_4517 SM01266 BF38_4517 BF38_4519 SM00382 ATPases associated with a variety of cellular activities BF38_452 SM00843 BF38_452 BF38_4530 SM00028 Tetratricopeptide repeats BF38_4535 SM01091 Transporter associated domain BF38_4536 SM00422 helix_turn_helix, mercury resistance BF38_4544 SM01350 BF38_4544 BF38_4545 SM00861 Transketolase, pyrimidine binding domain BF38_4549 SM00829 Enoylreductase BF38_4553 SM01276 BF38_4553 BF38_4561 SM00914 BF38_4561 BF38_4566 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF38_4566 SM00866 BF38_4566 BF38_4574 SM00849 Metallo-beta-lactamase superfamily BF38_4587 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF38_4588 SM00636 BF38_4588 BF38_4595 SM00871 Bacterial transcription activator, effector binding domain BF38_4599 SM00382 ATPases associated with a variety of cellular activities BF38_460 SM00849 Metallo-beta-lactamase superfamily BF38_4605 SM00849 Metallo-beta-lactamase superfamily BF38_4619 SM00849 Metallo-beta-lactamase superfamily BF38_4620 SM00829 Enoylreductase BF38_464 SM00642 Alpha-amylase domain BF38_4643 SM00829 Enoylreductase BF38_4644 SM00855 Phosphoglycerate mutase family BF38_4646 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BF38_4646 SM00534 ATPase domain of DNA mismatch repair MUTS family BF38_4648 SM00642 Alpha-amylase domain BF38_4661 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF38_4662 SM00829 Enoylreductase BF38_4667 SM00028 Tetratricopeptide repeats BF38_467 SM00420 helix_turn_helix, Deoxyribose operon repressor BF38_468 SM00363 S4 RNA-binding domain BF38_4683 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins BF38_4692 SM00479 BF38_4692 BF38_4693 SM00357 Cold shock protein domain BF38_4698 SM01022 BF38_4698 BF38_4714 SM00530 Helix-turn-helix XRE-family like proteins BF38_472 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF38_4740 SM00852 Probable molybdopterin binding domain BF38_4743 SM00729 Elongator protein 3, MiaB family, Radical SAM BF38_4747 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BF38_4747 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BF38_477 SM01058 CarD-like/TRCF domain BF38_4771 SM00382 ATPases associated with a variety of cellular activities BF38_4774 SM00434 DNA Topoisomerase IV BF38_4775 SM00387 Histidine kinase-like ATPases BF38_4775 SM00433 TopoisomeraseII BF38_4776 SM00881 CoA binding domain BF38_4777 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF38_4778 SM00448 cheY-homologous receiver domain BF38_4778 SM00862 Transcriptional regulatory protein, C terminal BF38_4781 SM01207 BF38_4781 BF38_4784 SM00257 Lysin motif BF38_4784 SM00636 BF38_4784 BF38_4788 SM00479 BF38_4788 BF38_4791 SM00382 ATPases associated with a variety of cellular activities BF38_4800 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BF38_4813 SM00644 BF38_4813 BF38_4813 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. BF38_4814 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BF38_4817 SM00091 PAS domain BF38_4817 SM00387 Histidine kinase-like ATPases BF38_4817 SM00388 His Kinase A (phosphoacceptor) domain BF38_4823 SM01058 CarD-like/TRCF domain BF38_484 SM00852 Probable molybdopterin binding domain BF38_4841 SM00382 ATPases associated with a variety of cellular activities BF38_4850 SM00644 BF38_4850 BF38_4853 SM00382 ATPases associated with a variety of cellular activities BF38_4854 SM00382 ATPases associated with a variety of cellular activities BF38_4857 SM00861 Transketolase, pyrimidine binding domain BF38_4861 SM00382 ATPases associated with a variety of cellular activities BF38_4862 SM00062 Bacterial periplasmic substrate-binding proteins BF38_4865 SM00857 Resolvase, N terminal domain BF38_487 SM00729 Elongator protein 3, MiaB family, Radical SAM BF38_4875 SM01230 BF38_4875 BF38_4876 SM00422 helix_turn_helix, mercury resistance BF38_4881 SM00382 ATPases associated with a variety of cellular activities BF38_4887 SM00287 Bacterial SH3 domain homologues BF38_4890 SM00420 helix_turn_helix, Deoxyribose operon repressor BF38_4890 SM01134 BF38_4890 BF38_4896 SM00636 BF38_4896 BF38_4900 SM00411 bacterial (prokaryotic) histone like domain BF38_4906 SM00382 ATPases associated with a variety of cellular activities BF38_491 SM00450 Rhodanese Homology Domain BF38_4911 SM00342 helix_turn_helix, arabinose operon control protein BF38_4913 SM00478 endonuclease III BF38_4920 SM00052 Putative diguanylate phosphodiesterase BF38_4920 SM00091 PAS domain BF38_4920 SM00267 diguanylate cyclase BF38_4925 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF38_4930 SM00148 Phospholipase C, catalytic domain (part); domain X BF38_4932 SM00257 Lysin motif BF38_4938 SM00853 MutL C terminal dimerisation domain BF38_4938 SM01340 BF38_4938 BF38_4939 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BF38_4939 SM00534 ATPase domain of DNA mismatch repair MUTS family BF38_4942 SM00729 Elongator protein 3, MiaB family, Radical SAM BF38_4948 SM00322 K homology RNA-binding domain BF38_4948 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF38_4950 SM00382 ATPases associated with a variety of cellular activities BF38_4951 SM00852 Probable molybdopterin binding domain BF38_4961 SM00382 ATPases associated with a variety of cellular activities BF38_4963 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF38_4963 SM00866 BF38_4963 BF38_4964 SM00382 ATPases associated with a variety of cellular activities BF38_4964 SM00843 BF38_4964 BF38_4967 SM00849 Metallo-beta-lactamase superfamily BF38_4968 SM01130 BF38_4968 BF38_4970 SM00859 Semialdehyde dehydrogenase, NAD binding domain BF38_4976 SM00316 Ribosomal protein S1-like RNA-binding domain BF38_4976 SM00322 K homology RNA-binding domain BF38_4977 SM01387 BF38_4977 BF38_4978 SM00904 Riboflavin kinase BF38_4985 SM00316 Ribosomal protein S1-like RNA-binding domain BF38_4985 SM00322 K homology RNA-binding domain BF38_4987 SM00479 BF38_4987 BF38_4987 SM00481 DNA polymerase alpha chain like domain BF38_4989 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF38_4998 SM00382 ATPases associated with a variety of cellular activities BF38_4998 SM01086 C-terminal, D2-small domain, of ClpB protein BF38_50 SM00400 zinc finger BF38_50 SM00493 BF38_50 BF38_50 SM00766 DNA primase DnaG DnaB-binding BF38_5002 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF38_5002 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF38_5002 SM00493 BF38_5002 BF38_5004 SM00881 CoA binding domain BF38_5014 SM00382 ATPases associated with a variety of cellular activities BF38_5014 SM00962 SRP54-type protein, GTPase domain BF38_5014 SM00963 SRP54-type protein, helical bundle domain BF38_5016 SM00382 ATPases associated with a variety of cellular activities BF38_5016 SM00962 SRP54-type protein, GTPase domain BF38_5016 SM00963 SRP54-type protein, helical bundle domain BF38_5017 SM00968 SMC proteins Flexible Hinge Domain BF38_5018 SM00358 Double-stranded RNA binding motif BF38_5018 SM00535 Ribonuclease III family BF38_5020 SM00822 BF38_5020 BF38_5021 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BF38_5024 SM00487 DEAD-like helicases superfamily BF38_5024 SM00490 helicase superfamily c-terminal domain BF38_5025 SM01120 BF38_5025 BF38_5025 SM01121 BF38_5025 BF38_5028 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain BF38_5031 SM00220 Serine/Threonine protein kinases, catalytic domain BF38_5031 SM00740 BF38_5031 BF38_5032 SM00331 Sigma factor PP2C-like phosphatases BF38_5032 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BF38_5037 SM00487 DEAD-like helicases superfamily BF38_5037 SM00490 helicase superfamily c-terminal domain BF38_5039 SM01409 BF38_5039 BF38_5040 SM00072 Guanylate kinase homologues. BF38_5043 SM00831 Cation transporter/ATPase, N-terminus BF38_5053 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BF38_5056 SM00851 MGS-like domain BF38_5056 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BF38_5056 SM01209 BF38_5056 BF38_5057 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BF38_506 SM00382 ATPases associated with a variety of cellular activities BF38_5062 SM00363 S4 RNA-binding domain BF38_5067 SM00363 S4 RNA-binding domain BF38_5076 SM00864 Tubulin/FtsZ family, GTPase domain BF38_5076 SM00865 Tubulin/FtsZ family, C-terminal domain BF38_5077 SM00842 Cell division protein FtsA BF38_5085 SM00740 BF38_5085 BF38_5086 SM00740 BF38_5086 BF38_5092 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains BF38_5096 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF38_510 SM00729 Elongator protein 3, MiaB family, Radical SAM BF38_5104 SM00855 Phosphoglycerate mutase family BF38_5117 SM00878 Biotin carboxylase C-terminal domain BF38_512 SM00382 ATPases associated with a variety of cellular activities BF38_5121 SM00670 Large family of predicted nucleotide-binding domains BF38_5126 SM00838 Elongation factor G C-terminus BF38_5142 SM00861 Transketolase, pyrimidine binding domain BF38_5148 SM00849 Metallo-beta-lactamase superfamily BF38_5161 SM00052 Putative diguanylate phosphodiesterase BF38_5169 SM00267 diguanylate cyclase BF38_5178 SM00387 Histidine kinase-like ATPases BF38_5178 SM00388 His Kinase A (phosphoacceptor) domain BF38_5181 SM00354 helix_turn _helix lactose operon repressor BF38_5185 SM00642 Alpha-amylase domain BF38_5186 SM00642 Alpha-amylase domain BF38_5187 SM00382 ATPases associated with a variety of cellular activities BF38_5194 SM00382 ATPases associated with a variety of cellular activities BF38_52 SM00116 Domain in cystathionine beta-synthase and other proteins. BF38_520 SM00014 Acid phosphatase homologues BF38_5211 SM01007 Class II Aldolase and Adducin N-terminal domain BF38_5216 SM00267 diguanylate cyclase BF38_5223 SM01061 CAT RNA binding domain BF38_5225 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF38_5225 SM00866 BF38_5225 BF38_5228 SM00849 Metallo-beta-lactamase superfamily BF38_523 SM00852 Probable molybdopterin binding domain BF38_5247 SM00387 Histidine kinase-like ATPases BF38_5249 SM00936 Penicillin-binding protein 5, C-terminal domain BF38_5250 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF38_5251 SM00382 ATPases associated with a variety of cellular activities BF38_5255 SM00347 helix_turn_helix multiple antibiotic resistance protein BF38_5259 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain BF38_5278 SM00354 helix_turn _helix lactose operon repressor BF38_5282 SM00704 CDGSH-type zinc finger. Function unknown. BF38_5288 SM00729 Elongator protein 3, MiaB family, Radical SAM BF38_5288 SM00876 Biotin and Thiamin Synthesis associated domain BF38_5298 SM00347 helix_turn_helix multiple antibiotic resistance protein BF38_5305 SM00859 Semialdehyde dehydrogenase, NAD binding domain BF38_5308 SM00849 Metallo-beta-lactamase superfamily BF38_5312 SM00849 Metallo-beta-lactamase superfamily BF38_5321 SM00382 ATPases associated with a variety of cellular activities BF38_5323 SM00062 Bacterial periplasmic substrate-binding proteins BF38_5323 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BF38_5329 SM00861 Transketolase, pyrimidine binding domain BF38_5333 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BF38_5335 SM00091 PAS domain BF38_5335 SM00382 ATPases associated with a variety of cellular activities BF38_5340 SM00448 cheY-homologous receiver domain BF38_5341 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF38_5344 SM00363 S4 RNA-binding domain BF38_5345 SM00861 Transketolase, pyrimidine binding domain BF38_535 SM00387 Histidine kinase-like ATPases BF38_5352 SM00878 Biotin carboxylase C-terminal domain BF38_536 SM00387 Histidine kinase-like ATPases BF38_536 SM00388 His Kinase A (phosphoacceptor) domain BF38_5362 SM00382 ATPases associated with a variety of cellular activities BF38_5366 SM00841 Elongation factor P, C-terminal BF38_5366 SM01185 BF38_5366 BF38_5373 SM00529 Helix-turn-helix diphteria tox regulatory element BF38_5377 SM00450 Rhodanese Homology Domain BF38_5378 SM00354 helix_turn _helix lactose operon repressor BF38_5388 SM00382 ATPases associated with a variety of cellular activities BF38_5389 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF38_5395 SM00487 DEAD-like helicases superfamily BF38_5395 SM00490 helicase superfamily c-terminal domain BF38_5402 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. BF38_542 SM00382 ATPases associated with a variety of cellular activities BF38_5420 SM00342 helix_turn_helix, arabinose operon control protein BF38_5447 SM00382 ATPases associated with a variety of cellular activities BF38_5451 SM00530 Helix-turn-helix XRE-family like proteins BF38_5464 SM00327 von Willebrand factor (vWF) type A domain BF38_5481 SM00530 Helix-turn-helix XRE-family like proteins BF38_5482 SM00870 BF38_5482 BF38_5492 SM00028 Tetratricopeptide repeats BF38_5498 SM00382 ATPases associated with a variety of cellular activities BF38_5510 SM00028 Tetratricopeptide repeats BF38_5517 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF38_5522 SM00835 Cupin BF38_5523 SM00422 helix_turn_helix, mercury resistance BF38_553 SM00947 Carbonic anhydrase BF38_554 SM01234 BF38_554 BF38_5559 SM00116 Domain in cystathionine beta-synthase and other proteins. BF38_5559 SM00924 MgtE intracellular N domain BF38_5565 SM00530 Helix-turn-helix XRE-family like proteins BF38_5575 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF38_558 SM00894 Excalibur calcium-binding domain BF38_5584 SM00823 Phosphopantetheine attachment site BF38_5585 SM00823 Phosphopantetheine attachment site BF38_5599 SM00830 Chorismate mutase type II BF38_5601 SM00849 Metallo-beta-lactamase superfamily BF38_5606 SM00823 Phosphopantetheine attachment site BF38_5607 SM00822 BF38_5607 BF38_5607 SM00823 Phosphopantetheine attachment site BF38_5607 SM00825 Beta-ketoacyl synthase BF38_5607 SM00826 BF38_5607 BF38_5608 SM00822 BF38_5608 BF38_5608 SM00823 Phosphopantetheine attachment site BF38_5608 SM00825 Beta-ketoacyl synthase BF38_5608 SM01294 BF38_5608 BF38_5609 SM00822 BF38_5609 BF38_5609 SM00823 Phosphopantetheine attachment site BF38_5609 SM00825 Beta-ketoacyl synthase BF38_5609 SM00826 BF38_5609 BF38_5609 SM01294 BF38_5609 BF38_5610 SM00822 BF38_5610 BF38_5610 SM00823 Phosphopantetheine attachment site BF38_5610 SM00825 Beta-ketoacyl synthase BF38_5610 SM01294 BF38_5610 BF38_5611 SM00823 Phosphopantetheine attachment site BF38_5611 SM00825 Beta-ketoacyl synthase BF38_5611 SM01294 BF38_5611 BF38_5615 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BF38_5616 SM00849 Metallo-beta-lactamase superfamily BF38_5617 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BF38_5617 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BF38_5619 SM00422 helix_turn_helix, mercury resistance BF38_5628 SM01321 BF38_5628 BF38_5631 SM00287 Bacterial SH3 domain homologues BF38_5661 SM00331 Sigma factor PP2C-like phosphatases BF38_5661 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain BF38_5664 SM00240 Forkhead associated domain BF38_5682 SM00474 3'-5' exonuclease BF38_5682 SM00482 DNA polymerase A domain BF38_570 SM00899 BF38_570 BF38_5707 SM00644 BF38_5707 BF38_5708 SM00287 Bacterial SH3 domain homologues BF38_5708 SM00644 BF38_5708 BF38_5714 SM00954 Region found in RelA / SpoT proteins BF38_572 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF38_572 SM00387 Histidine kinase-like ATPases BF38_572 SM00388 His Kinase A (phosphoacceptor) domain BF38_573 SM00448 cheY-homologous receiver domain BF38_573 SM00862 Transcriptional regulatory protein, C terminal BF38_5734 SM00047 Lysozyme subfamily 2 BF38_5745 SM00530 Helix-turn-helix XRE-family like proteins BF38_5752 SM00507 HNH nucleases BF38_579 SM00046 Diacylglycerol kinase catalytic domain (presumed) BF38_5810 SM00400 zinc finger BF38_5824 SM00434 DNA Topoisomerase IV BF38_5825 SM00433 TopoisomeraseII BF38_5857 SM00487 DEAD-like helicases superfamily BF38_5857 SM00490 helicase superfamily c-terminal domain BF38_587 SM00382 ATPases associated with a variety of cellular activities BF38_5879 SM00382 ATPases associated with a variety of cellular activities BF38_588 SM00342 helix_turn_helix, arabinose operon control protein BF38_588 SM00871 Bacterial transcription activator, effector binding domain BF38_5888 SM00530 Helix-turn-helix XRE-family like proteins BF38_589 SM00448 cheY-homologous receiver domain BF38_589 SM00862 Transcriptional regulatory protein, C terminal BF38_59 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF38_590 SM00387 Histidine kinase-like ATPases BF38_593 SM00382 ATPases associated with a variety of cellular activities BF38_5939 SM00475 5'-3' exonuclease BF38_597 SM00345 helix_turn_helix gluconate operon transcriptional repressor BF38_597 SM00866 BF38_597 BF38_6018 SM00271 DnaJ molecular chaperone homology domain BF38_605 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF38_605 SM00387 Histidine kinase-like ATPases BF38_605 SM00388 His Kinase A (phosphoacceptor) domain BF38_606 SM00448 cheY-homologous receiver domain BF38_606 SM00862 Transcriptional regulatory protein, C terminal BF38_6064 SM00530 Helix-turn-helix XRE-family like proteins BF38_607 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BF38_6102 SM00220 Serine/Threonine protein kinases, catalytic domain BF38_6110 SM00857 Resolvase, N terminal domain BF38_6128 SM00382 ATPases associated with a variety of cellular activities BF38_6139 SM00530 Helix-turn-helix XRE-family like proteins BF38_6140 SM00530 Helix-turn-helix XRE-family like proteins BF38_6144 SM00530 Helix-turn-helix XRE-family like proteins BF38_6148 SM00901 BF38_6148 BF38_6149 SM00530 Helix-turn-helix XRE-family like proteins BF38_615 SM00357 Cold shock protein domain BF38_6154 SM00382 ATPases associated with a variety of cellular activities BF38_6161 SM00382 ATPases associated with a variety of cellular activities BF38_6167 SM00382 ATPases associated with a variety of cellular activities BF38_6173 SM00028 Tetratricopeptide repeats BF38_6183 SM00422 helix_turn_helix, mercury resistance BF38_6190 SM00644 BF38_6190 BF38_6212 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BF38_6227 SM00857 Resolvase, N terminal domain BF38_623 SM00642 Alpha-amylase domain BF38_6237 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BF38_6237 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BF38_6237 SM00493 BF38_6237 BF38_65 SM00729 Elongator protein 3, MiaB family, Radical SAM BF38_659 SM00316 Ribosomal protein S1-like RNA-binding domain BF38_661 SM00344 helix_turn_helix ASNC type BF38_668 SM01298 BF38_668 BF38_669 SM00479 BF38_669 BF38_68 SM00271 DnaJ molecular chaperone homology domain BF38_688 SM00871 Bacterial transcription activator, effector binding domain BF38_715 SM00420 helix_turn_helix, Deoxyribose operon repressor BF38_72 SM00729 Elongator protein 3, MiaB family, Radical SAM BF38_722 SM00422 helix_turn_helix, mercury resistance BF38_725 SM00855 Phosphoglycerate mutase family BF38_727 SM00729 Elongator protein 3, MiaB family, Radical SAM BF38_736 SM00382 ATPases associated with a variety of cellular activities BF38_74 SM00838 Elongation factor G C-terminus BF38_740 SM00382 ATPases associated with a variety of cellular activities BF38_740 SM00930 BF38_740 BF38_743 SM00493 BF38_743 BF38_762 SM00530 Helix-turn-helix XRE-family like proteins BF38_764 SM00849 Metallo-beta-lactamase superfamily BF38_773 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF38_773 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF38_788 SM00530 Helix-turn-helix XRE-family like proteins BF38_793 SM00448 cheY-homologous receiver domain BF38_793 SM00862 Transcriptional regulatory protein, C terminal BF38_794 SM00387 Histidine kinase-like ATPases BF38_794 SM00388 His Kinase A (phosphoacceptor) domain BF38_798 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF38_798 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF38_799 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF38_799 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF38_803 SM00347 helix_turn_helix multiple antibiotic resistance protein BF38_81 SM00849 Metallo-beta-lactamase superfamily BF38_819 SM01276 BF38_819 BF38_820 SM01276 BF38_820 BF38_827 SM00363 S4 RNA-binding domain BF38_83 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BF38_831 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain BF38_832 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BF38_842 SM00382 ATPases associated with a variety of cellular activities BF38_846 SM00448 cheY-homologous receiver domain BF38_846 SM00862 Transcriptional regulatory protein, C terminal BF38_849 SM00382 ATPases associated with a variety of cellular activities BF38_853 SM00487 DEAD-like helicases superfamily BF38_857 SM00316 Ribosomal protein S1-like RNA-binding domain BF38_857 SM00357 Cold shock protein domain BF38_857 SM00955 BF38_857 BF38_863 SM01192 BF38_863 BF38_863 SM01193 BF38_863 BF38_867 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BF38_87 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BF38_887 SM00028 Tetratricopeptide repeats BF38_89 SM01103 BF38_89 BF38_895 SM00487 DEAD-like helicases superfamily BF38_895 SM00490 helicase superfamily c-terminal domain BF38_898 SM00422 helix_turn_helix, mercury resistance BF38_902 SM00530 Helix-turn-helix XRE-family like proteins BF38_905 SM00422 helix_turn_helix, mercury resistance BF38_907 SM00382 ATPases associated with a variety of cellular activities BF38_909 SM00382 ATPases associated with a variety of cellular activities BF38_911 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BF38_911 SM00245 tail specific protease BF38_913 SM00382 ATPases associated with a variety of cellular activities BF38_915 SM00937 BF38_915 BF38_916 SM00957 SecA DEAD-like domain BF38_916 SM00958 SecA preprotein cross-linking domain BF38_918 SM00357 Cold shock protein domain BF38_920 SM00487 DEAD-like helicases superfamily BF38_920 SM00490 helicase superfamily c-terminal domain BF38_927 SM00984 UDP binding domain BF38_930 SM00382 ATPases associated with a variety of cellular activities BF38_931 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. BF38_960 SM00287 Bacterial SH3 domain homologues BF38_966 SM00287 Bacterial SH3 domain homologues BF38_972 SM00487 DEAD-like helicases superfamily BF38_972 SM00490 helicase superfamily c-terminal domain BF38_982 SM00382 ATPases associated with a variety of cellular activities BF38_984 SM00530 Helix-turn-helix XRE-family like proteins BF38_989 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BF38_989 SM00387 Histidine kinase-like ATPases BF38_989 SM00388 His Kinase A (phosphoacceptor) domain BF38_990 SM00448 cheY-homologous receiver domain BF38_990 SM00862 Transcriptional regulatory protein, C terminal BF38_995 SM00984 UDP binding domain