BF36_1000	SM00382	ATPases associated with a variety of cellular activities
BF36_1008	SM00382	ATPases associated with a variety of cellular activities
BF36_1009	SM00642	Alpha-amylase domain
BF36_1010	SM00642	Alpha-amylase domain
BF36_1014	SM00354	helix_turn _helix lactose operon repressor
BF36_1017	SM00387	Histidine kinase-like ATPases
BF36_1017	SM00388	His Kinase A (phosphoacceptor) domain
BF36_1026	SM00267	diguanylate cyclase
BF36_1034	SM00052	Putative diguanylate phosphodiesterase
BF36_1047	SM00849	Metallo-beta-lactamase superfamily
BF36_1053	SM00861	Transketolase, pyrimidine binding domain
BF36_106	SM00479	BF36_106
BF36_1069	SM00838	Elongation factor G C-terminus
BF36_107	SM01298	BF36_107
BF36_1074	SM00670	Large family of predicted nucleotide-binding domains
BF36_1078	SM00878	Biotin carboxylase C-terminal domain
BF36_1091	SM00855	Phosphoglycerate mutase family
BF36_1099	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BF36_1103	SM00717	SANT  SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains
BF36_1109	SM00740	BF36_1109
BF36_1110	SM00740	BF36_1110
BF36_1118	SM00842	Cell division protein FtsA
BF36_1119	SM00864	Tubulin/FtsZ family, GTPase domain
BF36_1119	SM00865	Tubulin/FtsZ family, C-terminal domain
BF36_1128	SM00363	S4 RNA-binding domain
BF36_1133	SM00363	S4 RNA-binding domain
BF36_1138	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
BF36_1139	SM00851	MGS-like domain
BF36_1139	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
BF36_1139	SM01209	BF36_1139
BF36_114	SM00344	helix_turn_helix ASNC type
BF36_1142	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
BF36_1151	SM00831	Cation transporter/ATPase, N-terminus
BF36_1154	SM00072	Guanylate kinase homologues.
BF36_1155	SM01409	BF36_1155
BF36_1157	SM00487	DEAD-like helicases superfamily
BF36_1157	SM00490	helicase superfamily c-terminal domain
BF36_116	SM00316	Ribosomal protein S1-like RNA-binding domain
BF36_1162	SM00331	Sigma factor PP2C-like phosphatases
BF36_1162	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
BF36_1163	SM00220	Serine/Threonine protein kinases, catalytic domain
BF36_1163	SM00740	BF36_1163
BF36_1166	SM00983	Thiamin pyrophosphokinase, vitamin B1 binding domain
BF36_1169	SM01120	BF36_1169
BF36_1169	SM01121	BF36_1169
BF36_1170	SM00487	DEAD-like helicases superfamily
BF36_1170	SM00490	helicase superfamily c-terminal domain
BF36_1173	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
BF36_1174	SM00822	BF36_1174
BF36_1176	SM00358	Double-stranded RNA binding motif
BF36_1176	SM00535	Ribonuclease III family
BF36_1177	SM00968	SMC proteins Flexible Hinge Domain
BF36_1178	SM00382	ATPases associated with a variety of cellular activities
BF36_1178	SM00962	SRP54-type protein, GTPase domain
BF36_1178	SM00963	SRP54-type protein, helical bundle domain
BF36_1180	SM00382	ATPases associated with a variety of cellular activities
BF36_1180	SM00962	SRP54-type protein, GTPase domain
BF36_1180	SM00963	SRP54-type protein, helical bundle domain
BF36_1190	SM00881	CoA binding domain
BF36_1192	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
BF36_1192	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
BF36_1192	SM00493	BF36_1192
BF36_1196	SM00382	ATPases associated with a variety of cellular activities
BF36_1196	SM01086	C-terminal, D2-small domain, of ClpB protein
BF36_1205	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BF36_1207	SM00479	BF36_1207
BF36_1207	SM00481	DNA polymerase alpha chain like domain
BF36_1209	SM00316	Ribosomal protein S1-like RNA-binding domain
BF36_1209	SM00322	K homology RNA-binding domain
BF36_1216	SM00904	Riboflavin kinase
BF36_1217	SM01387	BF36_1217
BF36_1218	SM00316	Ribosomal protein S1-like RNA-binding domain
BF36_1218	SM00322	K homology RNA-binding domain
BF36_1224	SM00859	Semialdehyde dehydrogenase, NAD binding domain
BF36_1226	SM01130	BF36_1226
BF36_1227	SM00849	Metallo-beta-lactamase superfamily
BF36_1230	SM00382	ATPases associated with a variety of cellular activities
BF36_1230	SM00843	BF36_1230
BF36_1231	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BF36_1231	SM00866	BF36_1231
BF36_1233	SM00382	ATPases associated with a variety of cellular activities
BF36_1243	SM00852	Probable molybdopterin binding domain
BF36_1244	SM00382	ATPases associated with a variety of cellular activities
BF36_1246	SM00322	K homology RNA-binding domain
BF36_1246	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BF36_1252	SM00729	Elongator protein 3, MiaB family, Radical SAM
BF36_1255	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
BF36_1255	SM00534	ATPase domain of DNA mismatch repair MUTS family
BF36_1256	SM00853	MutL C terminal dimerisation domain
BF36_1256	SM01340	BF36_1256
BF36_1262	SM00257	Lysin motif
BF36_1264	SM00148	Phospholipase C, catalytic domain (part); domain X
BF36_1268	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BF36_1273	SM00052	Putative diguanylate phosphodiesterase
BF36_1273	SM00091	PAS domain
BF36_1273	SM00267	diguanylate cyclase
BF36_1280	SM00478	endonuclease III
BF36_1282	SM00342	helix_turn_helix, arabinose operon control protein
BF36_1287	SM00382	ATPases associated with a variety of cellular activities
BF36_1293	SM00411	bacterial (prokaryotic) histone like domain
BF36_1297	SM00636	BF36_1297
BF36_1303	SM00420	helix_turn_helix, Deoxyribose operon repressor
BF36_1303	SM01134	BF36_1303
BF36_1306	SM00287	Bacterial SH3 domain homologues
BF36_1312	SM00382	ATPases associated with a variety of cellular activities
BF36_1317	SM00422	helix_turn_helix, mercury resistance
BF36_1318	SM01230	BF36_1318
BF36_1322	SM00530	Helix-turn-helix XRE-family like proteins 
BF36_1323	SM00530	Helix-turn-helix XRE-family like proteins 
BF36_1333	SM00382	ATPases associated with a variety of cellular activities
BF36_1377	SM00644	BF36_1377
BF36_1389	SM00857	Resolvase, N terminal domain
BF36_1392	SM00062	Bacterial periplasmic substrate-binding proteins
BF36_1393	SM00382	ATPases associated with a variety of cellular activities
BF36_1397	SM00861	Transketolase, pyrimidine binding domain
BF36_1400	SM00382	ATPases associated with a variety of cellular activities
BF36_1401	SM00382	ATPases associated with a variety of cellular activities
BF36_1404	SM00644	BF36_1404
BF36_1413	SM00382	ATPases associated with a variety of cellular activities
BF36_1431	SM01058	CarD-like/TRCF domain
BF36_1437	SM00091	PAS domain
BF36_1437	SM00387	Histidine kinase-like ATPases
BF36_1437	SM00388	His Kinase A (phosphoacceptor) domain
BF36_1440	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
BF36_1441	SM00644	BF36_1441
BF36_1441	SM00701	Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme.
BF36_1454	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
BF36_1463	SM00382	ATPases associated with a variety of cellular activities
BF36_1466	SM00479	BF36_1466
BF36_1470	SM00257	Lysin motif
BF36_1470	SM00636	BF36_1470
BF36_1473	SM01207	BF36_1473
BF36_1476	SM00448	cheY-homologous receiver domain
BF36_1476	SM00862	Transcriptional regulatory protein, C terminal
BF36_1477	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BF36_1478	SM00881	CoA binding domain
BF36_1479	SM00387	Histidine kinase-like ATPases
BF36_1479	SM00433	TopoisomeraseII
BF36_1480	SM00434	DNA Topoisomerase IV
BF36_1483	SM00382	ATPases associated with a variety of cellular activities
BF36_1507	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
BF36_1507	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
BF36_1511	SM00729	Elongator protein 3, MiaB family, Radical SAM
BF36_1514	SM00852	Probable molybdopterin binding domain
BF36_152	SM00642	Alpha-amylase domain
BF36_1536	SM01022	BF36_1536
BF36_1541	SM00357	Cold shock protein domain
BF36_1542	SM00479	BF36_1542
BF36_1551	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
BF36_1565	SM00028	Tetratricopeptide repeats
BF36_1567	SM00829	Enoylreductase
BF36_1568	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BF36_1581	SM00642	Alpha-amylase domain
BF36_1583	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
BF36_1583	SM00534	ATPase domain of DNA mismatch repair MUTS family
BF36_1585	SM00855	Phosphoglycerate mutase family
BF36_1586	SM00829	Enoylreductase
BF36_160	SM00357	Cold shock protein domain
BF36_1611	SM00829	Enoylreductase
BF36_1612	SM00849	Metallo-beta-lactamase superfamily
BF36_1626	SM00849	Metallo-beta-lactamase superfamily
BF36_1632	SM00382	ATPases associated with a variety of cellular activities
BF36_1636	SM00871	Bacterial transcription activator, effector binding domain
BF36_1643	SM00636	BF36_1643
BF36_1644	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BF36_1655	SM00849	Metallo-beta-lactamase superfamily
BF36_1663	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BF36_1663	SM00866	BF36_1663
BF36_1668	SM00914	BF36_1668
BF36_1676	SM01276	BF36_1676
BF36_168	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
BF36_1680	SM00829	Enoylreductase
BF36_1684	SM00861	Transketolase, pyrimidine binding domain
BF36_1685	SM01350	BF36_1685
BF36_169	SM00448	cheY-homologous receiver domain
BF36_169	SM00862	Transcriptional regulatory protein, C terminal
BF36_1693	SM00422	helix_turn_helix, mercury resistance
BF36_1694	SM01091	Transporter associated domain
BF36_1699	SM00028	Tetratricopeptide repeats
BF36_17	SM00849	Metallo-beta-lactamase superfamily
BF36_170	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BF36_170	SM00387	Histidine kinase-like ATPases
BF36_170	SM00388	His Kinase A (phosphoacceptor) domain
BF36_1710	SM00382	ATPases associated with a variety of cellular activities
BF36_1712	SM01266	BF36_1712
BF36_1724	SM00530	Helix-turn-helix XRE-family like proteins 
BF36_1727	SM00382	ATPases associated with a variety of cellular activities
BF36_1740	SM00530	Helix-turn-helix XRE-family like proteins 
BF36_1751	SM00382	ATPases associated with a variety of cellular activities
BF36_1764	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BF36_1766	SM00382	ATPases associated with a variety of cellular activities
BF36_1771	SM00347	helix_turn_helix multiple antibiotic resistance protein
BF36_178	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BF36_178	SM00866	BF36_178
BF36_1781	SM00287	Bacterial SH3 domain homologues
BF36_1781	SM00644	BF36_1781
BF36_1785	SM00342	helix_turn_helix, arabinose operon control protein
BF36_1794	SM00344	helix_turn_helix ASNC type
BF36_1804	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BF36_1804	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BF36_1804	SM00319	Homologues of the ligand binding domain of Tar
BF36_1811	SM00028	Tetratricopeptide repeats
BF36_1812	SM00354	helix_turn _helix lactose operon repressor
BF36_182	SM00382	ATPases associated with a variety of cellular activities
BF36_1828	SM00448	cheY-homologous receiver domain
BF36_1828	SM00862	Transcriptional regulatory protein, C terminal
BF36_1829	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BF36_1829	SM00387	Histidine kinase-like ATPases
BF36_1829	SM00388	His Kinase A (phosphoacceptor) domain
BF36_1831	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BF36_1833	SM00382	ATPases associated with a variety of cellular activities
BF36_1837	SM00422	helix_turn_helix, mercury resistance
BF36_1845	SM00849	Metallo-beta-lactamase superfamily
BF36_185	SM00387	Histidine kinase-like ATPases
BF36_1855	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BF36_1855	SM00387	Histidine kinase-like ATPases
BF36_1855	SM00388	His Kinase A (phosphoacceptor) domain
BF36_1856	SM00448	cheY-homologous receiver domain
BF36_1856	SM00862	Transcriptional regulatory protein, C terminal
BF36_186	SM00448	cheY-homologous receiver domain
BF36_186	SM00862	Transcriptional regulatory protein, C terminal
BF36_1863	SM00347	helix_turn_helix multiple antibiotic resistance protein
BF36_1868	SM00342	helix_turn_helix, arabinose operon control protein
BF36_187	SM00342	helix_turn_helix, arabinose operon control protein
BF36_187	SM00871	Bacterial transcription activator, effector binding domain
BF36_1875	SM00344	helix_turn_helix ASNC type
BF36_188	SM00382	ATPases associated with a variety of cellular activities
BF36_1880	SM00448	cheY-homologous receiver domain
BF36_1880	SM00862	Transcriptional regulatory protein, C terminal
BF36_1881	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BF36_1881	SM00387	Histidine kinase-like ATPases
BF36_1881	SM00388	His Kinase A (phosphoacceptor) domain
BF36_1885	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BF36_1888	SM00226	Low molecular weight phosphatase family
BF36_19	SM00530	Helix-turn-helix XRE-family like proteins 
BF36_1914	SM01060	BF36_1914
BF36_1923	SM00387	Histidine kinase-like ATPases
BF36_1924	SM00448	cheY-homologous receiver domain
BF36_1929	SM00919	Malic enzyme, NAD binding domain
BF36_1929	SM01274	BF36_1929
BF36_1936	SM00342	helix_turn_helix, arabinose operon control protein
BF36_1941	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BF36_1941	SM00091	PAS domain
BF36_1941	SM00387	Histidine kinase-like ATPases
BF36_1941	SM00388	His Kinase A (phosphoacceptor) domain
BF36_1945	SM00530	Helix-turn-helix XRE-family like proteins 
BF36_1946	SM00870	BF36_1946
BF36_196	SM00046	Diacylglycerol kinase catalytic domain (presumed)
BF36_1962	SM00849	Metallo-beta-lactamase superfamily
BF36_1975	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BF36_1979	SM00346	helix_turn_helix isocitrate lyase regulation
BF36_1980	SM00796	Allophanate hydrolase subunit 1
BF36_1981	SM00797	Allophanate hydrolase subunit 2
BF36_2008	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BF36_2014	SM00342	helix_turn_helix, arabinose operon control protein
BF36_2014	SM00871	Bacterial transcription activator, effector binding domain
BF36_2019	SM00382	ATPases associated with a variety of cellular activities
BF36_202	SM00448	cheY-homologous receiver domain
BF36_202	SM00862	Transcriptional regulatory protein, C terminal
BF36_2021	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BF36_2022	SM00382	ATPases associated with a variety of cellular activities
BF36_203	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BF36_203	SM00387	Histidine kinase-like ATPases
BF36_203	SM00388	His Kinase A (phosphoacceptor) domain
BF36_2030	SM00422	helix_turn_helix, mercury resistance
BF36_2033	SM00855	Phosphoglycerate mutase family
BF36_2047	SM00889	Elongation factor G, domain IV
BF36_2048	SM00347	helix_turn_helix multiple antibiotic resistance protein
BF36_205	SM00899	BF36_205
BF36_2051	SM00860	SMI1 / KNR4 family
BF36_2057	SM01060	BF36_2057
BF36_2076	SM00850	LytTr DNA-binding domain
BF36_2081	SM00530	Helix-turn-helix XRE-family like proteins 
BF36_2083	SM00098	Alkaline phosphatase homologues
BF36_2087	SM00346	helix_turn_helix isocitrate lyase regulation
BF36_2090	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
BF36_2094	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BF36_2100	SM01133	BF36_2100
BF36_2104	SM00382	ATPases associated with a variety of cellular activities
BF36_2111	SM00091	PAS domain
BF36_2111	SM00382	ATPases associated with a variety of cellular activities
BF36_2116	SM00287	Bacterial SH3 domain homologues
BF36_2123	SM00830	Chorismate mutase type II
BF36_2132	SM00382	ATPases associated with a variety of cellular activities
BF36_2150	SM00028	Tetratricopeptide repeats
BF36_2156	SM00382	ATPases associated with a variety of cellular activities
BF36_2157	SM00062	Bacterial periplasmic substrate-binding proteins
BF36_217	SM00894	Excalibur calcium-binding domain
BF36_2202	SM00448	cheY-homologous receiver domain
BF36_2202	SM00862	Transcriptional regulatory protein, C terminal
BF36_2203	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BF36_2203	SM00387	Histidine kinase-like ATPases
BF36_2203	SM00388	His Kinase A (phosphoacceptor) domain
BF36_2204	SM00939	X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain
BF36_221	SM01234	BF36_221
BF36_2213	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
BF36_222	SM00947	Carbonic anhydrase
BF36_2227	SM00091	PAS domain
BF36_2227	SM00382	ATPases associated with a variety of cellular activities
BF36_2231	SM01130	BF36_2231
BF36_2237	SM01131	BF36_2237
BF36_2245	SM00341	Helicase and RNase D C-terminal
BF36_2245	SM00487	DEAD-like helicases superfamily
BF36_2245	SM00490	helicase superfamily c-terminal domain
BF36_2245	SM00956	BF36_2245
BF36_2259	SM00849	Metallo-beta-lactamase superfamily
BF36_2268	SM00060	Fibronectin type 3 domain
BF36_2268	SM00495	Chitin-binding domain type 3
BF36_2275	SM00116	Domain in cystathionine beta-synthase and other proteins.
BF36_2275	SM00382	ATPases associated with a variety of cellular activities
BF36_2287	SM00861	Transketolase, pyrimidine binding domain
BF36_2293	SM00420	helix_turn_helix, Deoxyribose operon repressor
BF36_2293	SM01134	BF36_2293
BF36_2297	SM00382	ATPases associated with a variety of cellular activities
BF36_2324	SM00871	Bacterial transcription activator, effector binding domain
BF36_2328	SM00642	Alpha-amylase domain
BF36_234	SM00382	ATPases associated with a variety of cellular activities
BF36_2345	SM00465	GIY-YIG type nucleases (URI domain)
BF36_2364	SM00480	DNA polymerase III beta subunit
BF36_2375	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BF36_2383	SM00422	helix_turn_helix, mercury resistance
BF36_2393	SM00740	BF36_2393
BF36_2394	SM00014	Acid phosphatase homologues
BF36_2395	SM00829	Enoylreductase
BF36_2398	SM00387	Histidine kinase-like ATPases
BF36_2398	SM00388	His Kinase A (phosphoacceptor) domain
BF36_240	SM00387	Histidine kinase-like ATPases
BF36_240	SM00388	His Kinase A (phosphoacceptor) domain
BF36_2401	SM00382	ATPases associated with a variety of cellular activities
BF36_2406	SM00091	PAS domain
BF36_2406	SM00387	Histidine kinase-like ATPases
BF36_2406	SM00388	His Kinase A (phosphoacceptor) domain
BF36_241	SM00387	Histidine kinase-like ATPases
BF36_2424	SM01209	BF36_2424
BF36_2425	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BF36_2431	SM00382	ATPases associated with a variety of cellular activities
BF36_2434	SM00382	ATPases associated with a variety of cellular activities
BF36_2436	SM00387	Histidine kinase-like ATPases
BF36_2437	SM00448	cheY-homologous receiver domain
BF36_2437	SM00862	Transcriptional regulatory protein, C terminal
BF36_2450	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BF36_2454	SM00342	helix_turn_helix, arabinose operon control protein
BF36_2464	SM00422	helix_turn_helix, mercury resistance
BF36_2464	SM00871	Bacterial transcription activator, effector binding domain
BF36_2468	SM00382	ATPases associated with a variety of cellular activities
BF36_2474	SM00342	helix_turn_helix, arabinose operon control protein
BF36_2482	SM00448	cheY-homologous receiver domain
BF36_2482	SM00862	Transcriptional regulatory protein, C terminal
BF36_2483	SM00387	Histidine kinase-like ATPases
BF36_2483	SM00388	His Kinase A (phosphoacceptor) domain
BF36_2495	SM00878	Biotin carboxylase C-terminal domain
BF36_2501	SM00382	ATPases associated with a variety of cellular activities
BF36_2504	SM00450	Rhodanese Homology Domain
BF36_2504	SM00849	Metallo-beta-lactamase superfamily
BF36_2507	SM00052	Putative diguanylate phosphodiesterase
BF36_2507	SM00091	PAS domain
BF36_2507	SM00267	diguanylate cyclase
BF36_2508	SM00382	ATPases associated with a variety of cellular activities
BF36_2513	SM00646	BF36_2513
BF36_2518	SM00530	Helix-turn-helix XRE-family like proteins 
BF36_2532	SM00354	helix_turn _helix lactose operon repressor
BF36_2533	SM00014	Acid phosphatase homologues
BF36_254	SM00852	Probable molybdopterin binding domain
BF36_2549	SM00855	Phosphoglycerate mutase family
BF36_2550	SM00347	helix_turn_helix multiple antibiotic resistance protein
BF36_2555	SM00382	ATPases associated with a variety of cellular activities
BF36_2560	SM00487	DEAD-like helicases superfamily
BF36_2560	SM00490	helicase superfamily c-terminal domain
BF36_2563	SM00849	Metallo-beta-lactamase superfamily
BF36_2569	SM01207	BF36_2569
BF36_257	SM00014	Acid phosphatase homologues
BF36_2583	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BF36_2584	SM00835	Cupin
BF36_2590	SM00530	Helix-turn-helix XRE-family like proteins 
BF36_2592	SM00646	BF36_2592
BF36_2594	SM00382	ATPases associated with a variety of cellular activities
BF36_2595	SM00382	ATPases associated with a variety of cellular activities
BF36_2602	SM00859	Semialdehyde dehydrogenase, NAD binding domain
BF36_2614	SM00357	Cold shock protein domain
BF36_2623	SM00530	Helix-turn-helix XRE-family like proteins 
BF36_2627	SM01059	Chloramphenicol acetyltransferase
BF36_2631	SM00849	Metallo-beta-lactamase superfamily
BF36_2634	SM00100	Cyclic nucleotide-monophosphate binding domain
BF36_2648	SM00382	ATPases associated with a variety of cellular activities
BF36_2649	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
BF36_265	SM00382	ATPases associated with a variety of cellular activities
BF36_2650	SM00363	S4 RNA-binding domain
BF36_2658	SM00411	bacterial (prokaryotic) histone like domain
BF36_2662	SM00923	MbtH-like protein
BF36_2663	SM00823	Phosphopantetheine attachment site
BF36_2663	SM00824	Thioesterase
BF36_267	SM00729	Elongator protein 3, MiaB family, Radical SAM
BF36_2671	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BF36_2722	SM00754	A domain in the BMP inhibitor chordin and in microbial proteins.
BF36_2730	SM00014	Acid phosphatase homologues
BF36_2733	SM00219	Tyrosine kinase, catalytic domain
BF36_2741	SM00382	ATPases associated with a variety of cellular activities
BF36_2744	SM00882	Coenzyme A transferase
BF36_2745	SM00882	Coenzyme A transferase
BF36_2748	SM00387	Histidine kinase-like ATPases
BF36_2748	SM00388	His Kinase A (phosphoacceptor) domain
BF36_2751	SM01091	Transporter associated domain
BF36_2759	SM00382	ATPases associated with a variety of cellular activities
BF36_2770	SM00829	Enoylreductase
BF36_2773	SM00421	helix_turn_helix, Lux Regulon
BF36_2773	SM00448	cheY-homologous receiver domain
BF36_2774	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BF36_2796	SM00563	Phosphate acyltransferases
BF36_2809	SM00382	ATPases associated with a variety of cellular activities
BF36_2824	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BF36_2824	SM00387	Histidine kinase-like ATPases
BF36_2824	SM00388	His Kinase A (phosphoacceptor) domain
BF36_2825	SM00448	cheY-homologous receiver domain
BF36_2825	SM00862	Transcriptional regulatory protein, C terminal
BF36_2842	SM00857	Resolvase, N terminal domain
BF36_2843	SM00860	SMI1 / KNR4 family
BF36_2847	SM00028	Tetratricopeptide repeats
BF36_2849	SM00382	ATPases associated with a variety of cellular activities
BF36_2852	SM00327	von Willebrand factor (vWF) type A domain
BF36_2858	SM00028	Tetratricopeptide repeats
BF36_2862	SM00836	DALR anticodon binding domain
BF36_2862	SM01016	Arginyl tRNA synthetase N terminal dom
BF36_2866	SM00567	E-Z type HEAT repeats
BF36_2866	SM00932	Scaffold protein Nfu/NifU N terminal
BF36_2870	SM00382	ATPases associated with a variety of cellular activities
BF36_2871	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BF36_2879	SM00894	Excalibur calcium-binding domain
BF36_289	SM00450	Rhodanese Homology Domain
BF36_2891	SM00852	Probable molybdopterin binding domain
BF36_2893	SM00729	Elongator protein 3, MiaB family, Radical SAM
BF36_2894	SM00100	Cyclic nucleotide-monophosphate binding domain
BF36_2894	SM00419	helix_turn_helix, cAMP Regulatory protein
BF36_2896	SM00382	ATPases associated with a variety of cellular activities
BF36_2897	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BF36_2901	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
BF36_2904	SM00460	Transglutaminase/protease-like homologues
BF36_2907	SM00849	Metallo-beta-lactamase superfamily
BF36_2912	SM00829	Enoylreductase
BF36_2916	SM00487	DEAD-like helicases superfamily
BF36_2916	SM00490	helicase superfamily c-terminal domain
BF36_293	SM00729	Elongator protein 3, MiaB family, Radical SAM
BF36_2935	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BF36_2940	SM01005	Alanine racemase, C-terminal domain
BF36_2943	SM00855	Phosphoglycerate mutase family
BF36_2944	SM00244	prohibitin homologues
BF36_2959	SM01091	Transporter associated domain
BF36_296	SM00852	Probable molybdopterin binding domain
BF36_2964	SM00155	Phospholipase D. Active site motifs.
BF36_2974	SM00855	Phosphoglycerate mutase family
BF36_2995	SM00833	Cobalamin synthesis protein cobW C-terminal domain
BF36_3007	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BF36_3007	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BF36_3014	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BF36_3018	SM00966	SpoVT / AbrB like domain 
BF36_3023	SM00460	Transglutaminase/protease-like homologues
BF36_303	SM01058	CarD-like/TRCF domain
BF36_3041	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BF36_3041	SM00387	Histidine kinase-like ATPases
BF36_3041	SM00388	His Kinase A (phosphoacceptor) domain
BF36_3042	SM00448	cheY-homologous receiver domain
BF36_3042	SM00862	Transcriptional regulatory protein, C terminal
BF36_3057	SM00387	Histidine kinase-like ATPases
BF36_3057	SM00388	His Kinase A (phosphoacceptor) domain
BF36_3058	SM00448	cheY-homologous receiver domain
BF36_3058	SM00862	Transcriptional regulatory protein, C terminal
BF36_3059	SM00382	ATPases associated with a variety of cellular activities
BF36_3061	SM00287	Bacterial SH3 domain homologues
BF36_3067	SM00382	ATPases associated with a variety of cellular activities
BF36_3068	SM00382	ATPases associated with a variety of cellular activities
BF36_3072	SM00347	helix_turn_helix multiple antibiotic resistance protein
BF36_3079	SM00382	ATPases associated with a variety of cellular activities
BF36_308	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BF36_3080	SM00382	ATPases associated with a variety of cellular activities
BF36_3087	SM00833	Cobalamin synthesis protein cobW C-terminal domain
BF36_3106	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
BF36_3106	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
BF36_3106	SM00493	BF36_3106
BF36_3108	SM00287	Bacterial SH3 domain homologues
BF36_3110	SM01011	Aminopeptidase P, N-terminal domain
BF36_3116	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
BF36_3118	SM01133	BF36_3118
BF36_312	SM00363	S4 RNA-binding domain
BF36_3128	SM00450	Rhodanese Homology Domain
BF36_313	SM00420	helix_turn_helix, Deoxyribose operon repressor
BF36_3131	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BF36_3131	SM00387	Histidine kinase-like ATPases
BF36_3131	SM00388	His Kinase A (phosphoacceptor) domain
BF36_3132	SM00448	cheY-homologous receiver domain
BF36_3132	SM00862	Transcriptional regulatory protein, C terminal
BF36_3134	SM00729	Elongator protein 3, MiaB family, Radical SAM
BF36_3144	SM00850	LytTr DNA-binding domain
BF36_3150	SM00854	Bacterial capsule synthesis protein PGA_cap
BF36_316	SM00642	Alpha-amylase domain
BF36_3183	SM00047	Lysozyme subfamily 2
BF36_3184	SM00646	BF36_3184
BF36_3195	SM00487	DEAD-like helicases superfamily
BF36_3195	SM00490	helicase superfamily c-terminal domain
BF36_3196	SM00448	cheY-homologous receiver domain
BF36_3197	SM00387	Histidine kinase-like ATPases
BF36_3198	SM00919	Malic enzyme, NAD binding domain
BF36_3198	SM01274	BF36_3198
BF36_320	SM00849	Metallo-beta-lactamase superfamily
BF36_3202	SM00155	Phospholipase D. Active site motifs.
BF36_3205	SM00382	ATPases associated with a variety of cellular activities
BF36_3207	SM00421	helix_turn_helix, Lux Regulon
BF36_3207	SM00448	cheY-homologous receiver domain
BF36_3215	SM00530	Helix-turn-helix XRE-family like proteins 
BF36_3229	SM00422	helix_turn_helix, mercury resistance
BF36_3234	SM00833	Cobalamin synthesis protein cobW C-terminal domain
BF36_3236	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BF36_3236	SM00895	BF36_3236
BF36_3244	SM00347	helix_turn_helix multiple antibiotic resistance protein
BF36_3248	SM00855	Phosphoglycerate mutase family
BF36_3251	SM00835	Cupin
BF36_3255	SM00849	Metallo-beta-lactamase superfamily
BF36_3255	SM01027	Beta-Casp domain
BF36_3258	SM00382	ATPases associated with a variety of cellular activities
BF36_3262	SM00530	Helix-turn-helix XRE-family like proteins 
BF36_3271	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
BF36_3273	SM00382	ATPases associated with a variety of cellular activities
BF36_3273	SM00962	SRP54-type protein, GTPase domain
BF36_328	SM00843	BF36_328
BF36_3290	SM00260	Two component signalling adaptor domain
BF36_3290	SM00448	cheY-homologous receiver domain
BF36_3297	SM00382	ATPases associated with a variety of cellular activities
BF36_3313	SM00138	Methyltransferase, chemotaxis proteins 
BF36_3317	SM00073	Histidine Phosphotransfer domain
BF36_3317	SM00260	Two component signalling adaptor domain
BF36_3317	SM00387	Histidine kinase-like ATPases
BF36_3317	SM01231	BF36_3317
BF36_3318	SM00448	cheY-homologous receiver domain
BF36_3337	SM00422	helix_turn_helix, mercury resistance
BF36_3337	SM00871	Bacterial transcription activator, effector binding domain
BF36_3338	SM00849	Metallo-beta-lactamase superfamily
BF36_3348	SM00357	Cold shock protein domain
BF36_3370	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
BF36_3370	SM00475	5'-3' exonuclease
BF36_3376	SM00450	Rhodanese Homology Domain
BF36_3389	SM00491	BF36_3389
BF36_3391	SM00981	BF36_3391
BF36_3402	SM00060	Fibronectin type 3 domain
BF36_3404	SM00478	endonuclease III
BF36_3404	SM00525	BF36_3404
BF36_3409	SM00479	BF36_3409
BF36_3409	SM00491	BF36_3409
BF36_3418	SM00851	MGS-like domain
BF36_342	SM00354	helix_turn _helix lactose operon repressor
BF36_3422	SM00986	Uracil DNA glycosylase superfamily
BF36_3422	SM00987	UreE urease accessory protein, C-terminal domain 
BF36_3431	SM00914	BF36_3431
BF36_3432	SM00028	Tetratricopeptide repeats
BF36_3436	SM00562	BF36_3436
BF36_3441	SM00411	bacterial (prokaryotic) histone like domain
BF36_3452	SM01240	BF36_3452
BF36_3453	SM00316	Ribosomal protein S1-like RNA-binding domain
BF36_3456	SM00870	BF36_3456
BF36_3458	SM00644	BF36_3458
BF36_3461	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
BF36_3463	SM00422	helix_turn_helix, mercury resistance
BF36_3465	SM00257	Lysin motif
BF36_3467	SM00487	DEAD-like helicases superfamily
BF36_3467	SM00490	helicase superfamily c-terminal domain
BF36_3472	SM00257	Lysin motif
BF36_3474	SM00091	PAS domain
BF36_3474	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BF36_3474	SM00387	Histidine kinase-like ATPases
BF36_3474	SM00388	His Kinase A (phosphoacceptor) domain
BF36_3475	SM00448	cheY-homologous receiver domain
BF36_3475	SM00862	Transcriptional regulatory protein, C terminal
BF36_3479	SM00363	S4 RNA-binding domain
BF36_349	SM00248	ankyrin repeats
BF36_3490	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BF36_3490	SM00387	Histidine kinase-like ATPases
BF36_3490	SM00388	His Kinase A (phosphoacceptor) domain
BF36_3494	SM00091	PAS domain
BF36_3494	SM00387	Histidine kinase-like ATPases
BF36_3494	SM00388	His Kinase A (phosphoacceptor) domain
BF36_35	SM00493	BF36_35
BF36_350	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BF36_350	SM00387	Histidine kinase-like ATPases
BF36_350	SM00388	His Kinase A (phosphoacceptor) domain
BF36_351	SM00448	cheY-homologous receiver domain
BF36_351	SM00862	Transcriptional regulatory protein, C terminal
BF36_3512	SM00421	helix_turn_helix, Lux Regulon
BF36_3512	SM00448	cheY-homologous receiver domain
BF36_3513	SM00387	Histidine kinase-like ATPases
BF36_3549	SM01329	BF36_3549
BF36_355	SM00116	Domain in cystathionine beta-synthase and other proteins.
BF36_3550	SM00917	LeuA allosteric (dimerisation) domain
BF36_3563	SM00347	helix_turn_helix multiple antibiotic resistance protein
BF36_3588	SM00344	helix_turn_helix ASNC type
BF36_3592	SM00382	ATPases associated with a variety of cellular activities
BF36_3594	SM00382	ATPases associated with a variety of cellular activities
BF36_3595	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BF36_3598	SM00465	GIY-YIG type nucleases (URI domain)
BF36_3598	SM00496	Intron-encoded nuclease repeat 2
BF36_361	SM00363	S4 RNA-binding domain
BF36_3611	SM00387	Histidine kinase-like ATPases
BF36_3611	SM00388	His Kinase A (phosphoacceptor) domain
BF36_3615	SM00347	helix_turn_helix multiple antibiotic resistance protein
BF36_3616	SM00387	Histidine kinase-like ATPases
BF36_3616	SM00388	His Kinase A (phosphoacceptor) domain
BF36_3620	SM01007	Class II Aldolase and Adducin N-terminal domain
BF36_3621	SM00365	Leucine-rich repeat, SDS22-like subfamily
BF36_3621	SM00369	Leucine-rich repeats, typical (most populated) subfamily
BF36_3621	SM00725	NEAr Transporter domain
BF36_3623	SM00420	helix_turn_helix, Deoxyribose operon repressor
BF36_3623	SM01134	BF36_3623
BF36_3629	SM00382	ATPases associated with a variety of cellular activities
BF36_3636	SM00822	BF36_3636
BF36_364	SM00363	S4 RNA-binding domain
BF36_364	SM01390	BF36_364
BF36_3650	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BF36_3650	SM00895	BF36_3650
BF36_3651	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BF36_3651	SM00387	Histidine kinase-like ATPases
BF36_3651	SM00388	His Kinase A (phosphoacceptor) domain
BF36_3652	SM00448	cheY-homologous receiver domain
BF36_3652	SM00862	Transcriptional regulatory protein, C terminal
BF36_3662	SM00014	Acid phosphatase homologues
BF36_3666	SM00382	ATPases associated with a variety of cellular activities
BF36_3669	SM00530	Helix-turn-helix XRE-family like proteins 
BF36_3689	SM00530	Helix-turn-helix XRE-family like proteins 
BF36_3690	SM00861	Transketolase, pyrimidine binding domain
BF36_3712	SM00635	Bacterial Ig-like domain 2
BF36_372	SM00981	BF36_372
BF36_3743	SM00954	Region found in RelA / SpoT proteins
BF36_3745	SM01118	BF36_3745
BF36_3751	SM00155	Phospholipase D. Active site motifs.
BF36_3758	SM00382	ATPases associated with a variety of cellular activities
BF36_3759	SM00382	ATPases associated with a variety of cellular activities
BF36_3767	SM00825	Beta-ketoacyl synthase
BF36_3773	SM00382	ATPases associated with a variety of cellular activities
BF36_3773	SM01086	C-terminal, D2-small domain, of ClpB protein
BF36_3782	SM00316	Ribosomal protein S1-like RNA-binding domain
BF36_3784	SM00530	Helix-turn-helix XRE-family like proteins 
BF36_3785	SM00642	Alpha-amylase domain
BF36_3787	SM01060	BF36_3787
BF36_38	SM00382	ATPases associated with a variety of cellular activities
BF36_38	SM00930	BF36_38
BF36_3812	SM00357	Cold shock protein domain
BF36_3825	SM00448	cheY-homologous receiver domain
BF36_3825	SM00862	Transcriptional regulatory protein, C terminal
BF36_3826	SM00387	Histidine kinase-like ATPases
BF36_3826	SM00388	His Kinase A (phosphoacceptor) domain
BF36_3828	SM00342	helix_turn_helix, arabinose operon control protein
BF36_3828	SM00871	Bacterial transcription activator, effector binding domain
BF36_3831	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BF36_3840	SM00849	Metallo-beta-lactamase superfamily
BF36_3842	SM00354	helix_turn _helix lactose operon repressor
BF36_3863	SM00422	helix_turn_helix, mercury resistance
BF36_3876	SM00382	ATPases associated with a variety of cellular activities
BF36_3879	SM00347	helix_turn_helix multiple antibiotic resistance protein
BF36_3888	SM00347	helix_turn_helix multiple antibiotic resistance protein
BF36_3898	SM00530	Helix-turn-helix XRE-family like proteins 
BF36_3911	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BF36_3917	SM00829	Enoylreductase
BF36_3925	SM00387	Histidine kinase-like ATPases
BF36_3925	SM00388	His Kinase A (phosphoacceptor) domain
BF36_3925	SM00448	cheY-homologous receiver domain
BF36_3926	SM00138	Methyltransferase, chemotaxis proteins 
BF36_3927	SM00331	Sigma factor PP2C-like phosphatases
BF36_3927	SM00448	cheY-homologous receiver domain
BF36_3940	SM00460	Transglutaminase/protease-like homologues
BF36_3944	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BF36_3948	SM01120	BF36_3948
BF36_3955	SM00347	helix_turn_helix multiple antibiotic resistance protein
BF36_397	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
BF36_397	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
BF36_3979	SM00422	helix_turn_helix, mercury resistance
BF36_399	SM00530	Helix-turn-helix XRE-family like proteins 
BF36_3993	SM00448	cheY-homologous receiver domain
BF36_3994	SM00091	PAS domain
BF36_3994	SM00387	Histidine kinase-like ATPases
BF36_3998	SM00382	ATPases associated with a variety of cellular activities
BF36_3999	SM00382	ATPases associated with a variety of cellular activities
BF36_4013	SM00646	BF36_4013
BF36_4029	SM00957	SecA DEAD-like domain
BF36_4029	SM00958	SecA preprotein cross-linking domain
BF36_4036	SM00729	Elongator protein 3, MiaB family, Radical SAM
BF36_4037	SM00644	BF36_4037
BF36_4051	SM00382	ATPases associated with a variety of cellular activities
BF36_4053	SM00062	Bacterial periplasmic substrate-binding proteins
BF36_4053	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
BF36_4054	SM00382	ATPases associated with a variety of cellular activities
BF36_4055	SM00382	ATPases associated with a variety of cellular activities
BF36_4061	SM01060	BF36_4061
BF36_4075	SM00344	helix_turn_helix ASNC type
BF36_4095	SM00559	Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen
BF36_4106	SM00382	ATPases associated with a variety of cellular activities
BF36_4108	SM00287	Bacterial SH3 domain homologues
BF36_411	SM00849	Metallo-beta-lactamase superfamily
BF36_4118	SM00829	Enoylreductase
BF36_4123	SM00450	Rhodanese Homology Domain
BF36_4124	SM00450	Rhodanese Homology Domain
BF36_4127	SM00450	Rhodanese Homology Domain
BF36_4127	SM00849	Metallo-beta-lactamase superfamily
BF36_4128	SM00450	Rhodanese Homology Domain
BF36_413	SM00116	Domain in cystathionine beta-synthase and other proteins.
BF36_4130	SM00450	Rhodanese Homology Domain
BF36_4144	SM00354	helix_turn _helix lactose operon repressor
BF36_4146	SM00640	Glycosyl hydrolases family 32
BF36_4156	SM00347	helix_turn_helix multiple antibiotic resistance protein
BF36_4173	SM00382	ATPases associated with a variety of cellular activities
BF36_4175	SM00287	Bacterial SH3 domain homologues
BF36_4178	SM00116	Domain in cystathionine beta-synthase and other proteins.
BF36_42	SM00382	ATPases associated with a variety of cellular activities
BF36_4206	SM00899	BF36_4206
BF36_421	SM00481	DNA polymerase alpha chain like domain
BF36_422	SM00919	Malic enzyme, NAD binding domain
BF36_422	SM01274	BF36_422
BF36_4224	SM00530	Helix-turn-helix XRE-family like proteins 
BF36_423	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BF36_4233	SM00530	Helix-turn-helix XRE-family like proteins 
BF36_4235	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BF36_4243	SM00770	Zinc dependent phospholipase C (alpha toxin)
BF36_4245	SM00829	Enoylreductase
BF36_4251	SM00382	ATPases associated with a variety of cellular activities
BF36_4254	SM00354	helix_turn _helix lactose operon repressor
BF36_4256	SM00347	helix_turn_helix multiple antibiotic resistance protein
BF36_4258	SM00382	ATPases associated with a variety of cellular activities
BF36_4259	SM00382	ATPases associated with a variety of cellular activities
BF36_4267	SM00448	cheY-homologous receiver domain
BF36_4267	SM00862	Transcriptional regulatory protein, C terminal
BF36_4268	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BF36_4268	SM00387	Histidine kinase-like ATPases
BF36_4268	SM00388	His Kinase A (phosphoacceptor) domain
BF36_4280	SM00062	Bacterial periplasmic substrate-binding proteins
BF36_4280	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
BF36_4281	SM00382	ATPases associated with a variety of cellular activities
BF36_4288	SM00642	Alpha-amylase domain
BF36_4290	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BF36_4290	SM00866	BF36_4290
BF36_4292	SM00052	Putative diguanylate phosphodiesterase
BF36_4292	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BF36_4292	SM00091	PAS domain
BF36_4292	SM00267	diguanylate cyclase
BF36_4295	SM00155	Phospholipase D. Active site motifs.
BF36_4296	SM00382	ATPases associated with a variety of cellular activities
BF36_4297	SM00327	von Willebrand factor (vWF) type A domain
BF36_4302	SM00382	ATPases associated with a variety of cellular activities
BF36_4308	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BF36_4311	SM01091	Transporter associated domain
BF36_432	SM01329	BF36_432
BF36_4321	SM00028	Tetratricopeptide repeats
BF36_4321	SM00530	Helix-turn-helix XRE-family like proteins 
BF36_4324	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BF36_4326	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
BF36_4326	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
BF36_4329	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
BF36_4329	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
BF36_4333	SM00448	cheY-homologous receiver domain
BF36_4333	SM00862	Transcriptional regulatory protein, C terminal
BF36_4334	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BF36_4334	SM00387	Histidine kinase-like ATPases
BF36_4334	SM00388	His Kinase A (phosphoacceptor) domain
BF36_4336	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BF36_4339	SM00919	Malic enzyme, NAD binding domain
BF36_4339	SM01274	BF36_4339
BF36_4341	SM00448	cheY-homologous receiver domain
BF36_4342	SM00387	Histidine kinase-like ATPases
BF36_4343	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BF36_4343	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BF36_4346	SM00387	Histidine kinase-like ATPases
BF36_4346	SM00388	His Kinase A (phosphoacceptor) domain
BF36_4347	SM00448	cheY-homologous receiver domain
BF36_4347	SM00862	Transcriptional regulatory protein, C terminal
BF36_4352	SM00382	ATPases associated with a variety of cellular activities
BF36_4354	SM00248	ankyrin repeats
BF36_4358	SM00448	cheY-homologous receiver domain
BF36_4359	SM00091	PAS domain
BF36_4359	SM00387	Histidine kinase-like ATPases
BF36_4360	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BF36_4360	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BF36_4361	SM00244	prohibitin homologues
BF36_4363	SM00089	Repeats in polycystic kidney disease 1 (PKD1) and other proteins
BF36_4367	SM00365	Leucine-rich repeat, SDS22-like subfamily
BF36_4367	SM00369	Leucine-rich repeats, typical (most populated) subfamily
BF36_4367	SM00725	NEAr Transporter domain
BF36_4369	SM00763	PrkA AAA domain
BF36_437	SM00448	cheY-homologous receiver domain
BF36_437	SM00862	Transcriptional regulatory protein, C terminal
BF36_4371	SM00052	Putative diguanylate phosphodiesterase
BF36_4371	SM00091	PAS domain
BF36_4371	SM00267	diguanylate cyclase
BF36_4374	SM00567	E-Z type HEAT repeats
BF36_438	SM00091	PAS domain
BF36_438	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BF36_438	SM00387	Histidine kinase-like ATPases
BF36_438	SM00388	His Kinase A (phosphoacceptor) domain
BF36_439	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
BF36_439	SM00474	3'-5' exonuclease
BF36_439	SM00475	5'-3' exonuclease
BF36_439	SM00482	DNA polymerase A domain
BF36_440	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
BF36_440	SM01232	BF36_440
BF36_4406	SM00382	ATPases associated with a variety of cellular activities
BF36_4410	SM00382	ATPases associated with a variety of cellular activities
BF36_4415	SM00478	endonuclease III
BF36_4415	SM00525	BF36_4415
BF36_443	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
BF36_4431	SM00984	UDP binding domain
BF36_4441	SM00530	Helix-turn-helix XRE-family like proteins 
BF36_4446	SM00478	endonuclease III
BF36_4465	SM00226	Low molecular weight phosphatase family
BF36_4467	SM00831	Cation transporter/ATPase, N-terminus
BF36_447	SM00382	ATPases associated with a variety of cellular activities
BF36_4476	SM00946	Prolyl-tRNA synthetase, C-terminal
BF36_4481	SM00530	Helix-turn-helix XRE-family like proteins 
BF36_4488	SM00060	Fibronectin type 3 domain
BF36_4488	SM00636	BF36_4488
BF36_4488	SM00637	BF36_4488
BF36_4489	SM00382	ATPases associated with a variety of cellular activities
BF36_449	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
BF36_4490	SM00382	ATPases associated with a variety of cellular activities
BF36_4494	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BF36_4494	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BF36_4498	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
BF36_4498	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
BF36_4498	SM00493	BF36_4498
BF36_4502	SM00642	Alpha-amylase domain
BF36_4504	SM00100	Cyclic nucleotide-monophosphate binding domain
BF36_4504	SM00419	helix_turn_helix, cAMP Regulatory protein
BF36_4510	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BF36_4510	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BF36_4511	SM00382	ATPases associated with a variety of cellular activities
BF36_4512	SM00062	Bacterial periplasmic substrate-binding proteins
BF36_4512	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
BF36_4533	SM01007	Class II Aldolase and Adducin N-terminal domain
BF36_4542	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
BF36_4555	SM00382	ATPases associated with a variety of cellular activities
BF36_4558	SM00046	Diacylglycerol kinase catalytic domain (presumed)
BF36_4559	SM00845	GatB domain
BF36_4563	SM00347	helix_turn_helix multiple antibiotic resistance protein
BF36_4569	SM00382	ATPases associated with a variety of cellular activities
BF36_4569	SM00930	BF36_4569
BF36_4575	SM00278	Helix-hairpin-helix DNA-binding motif class 1
BF36_4575	SM00292	breast cancer carboxy-terminal domain
BF36_4575	SM00532	Ligase N family
BF36_4579	SM00244	prohibitin homologues
BF36_4581	SM01209	BF36_4581
BF36_4581	SM01210	BF36_4581
BF36_4582	SM00798	AICARFT/IMPCHase bienzyme
BF36_4582	SM00851	MGS-like domain
BF36_4587	SM01211	BF36_4587
BF36_4590	SM00998	Adenylosuccinate lyase C-terminus
BF36_4592	SM01001	AIR carboxylase
BF36_4603	SM00448	cheY-homologous receiver domain
BF36_4603	SM00862	Transcriptional regulatory protein, C terminal
BF36_4604	SM00387	Histidine kinase-like ATPases
BF36_4604	SM00388	His Kinase A (phosphoacceptor) domain
BF36_4605	SM00382	ATPases associated with a variety of cellular activities
BF36_4630	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BF36_4630	SM00387	Histidine kinase-like ATPases
BF36_4630	SM00388	His Kinase A (phosphoacceptor) domain
BF36_4631	SM00448	cheY-homologous receiver domain
BF36_4631	SM00862	Transcriptional regulatory protein, C terminal
BF36_4635	SM00883	Chaperonin 10 Kd subunit
BF36_4638	SM00881	CoA binding domain
BF36_4639	SM00382	ATPases associated with a variety of cellular activities
BF36_464	SM00967	RNA 2'-O ribose methyltransferase substrate binding
BF36_466	SM00873	B3/4 domain
BF36_466	SM00874	tRNA synthetase B5 domain
BF36_466	SM00896	Ferredoxin-fold anticodon binding domain
BF36_4661	SM00731	SprT homologues.
BF36_4662	SM00316	Ribosomal protein S1-like RNA-binding domain
BF36_4662	SM00732	Likely ribonuclease with RNase H fold.
BF36_4665	SM01005	Alanine racemase, C-terminal domain
BF36_4670	SM00487	DEAD-like helicases superfamily
BF36_4670	SM00490	helicase superfamily c-terminal domain
BF36_4683	SM00382	ATPases associated with a variety of cellular activities
BF36_4684	SM00382	ATPases associated with a variety of cellular activities
BF36_4692	SM00382	ATPases associated with a variety of cellular activities
BF36_4693	SM00421	helix_turn_helix, Lux Regulon
BF36_4693	SM00448	cheY-homologous receiver domain
BF36_4694	SM00387	Histidine kinase-like ATPases
BF36_4695	SM00382	ATPases associated with a variety of cellular activities
BF36_4705	SM00354	helix_turn _helix lactose operon repressor
BF36_4707	SM00563	Phosphate acyltransferases
BF36_4725	SM00342	helix_turn_helix, arabinose operon control protein
BF36_4728	SM00382	ATPases associated with a variety of cellular activities
BF36_4729	SM00382	ATPases associated with a variety of cellular activities
BF36_4739	SM00829	Enoylreductase
BF36_474	SM00278	Helix-hairpin-helix DNA-binding motif class 1
BF36_474	SM00481	DNA polymerase alpha chain like domain
BF36_474	SM00483	DNA polymerase X family
BF36_4741	SM00382	ATPases associated with a variety of cellular activities
BF36_4741	SM00930	BF36_4741
BF36_475	SM00463	Small MutS-related domain
BF36_475	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
BF36_475	SM00534	ATPase domain of DNA mismatch repair MUTS family
BF36_4751	SM01350	BF36_4751
BF36_4754	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BF36_4754	SM00895	BF36_4754
BF36_477	SM00363	S4 RNA-binding domain
BF36_4777	SM01251	BF36_4777
BF36_4780	SM00646	BF36_4780
BF36_4786	SM00382	ATPases associated with a variety of cellular activities
BF36_4787	SM00382	ATPases associated with a variety of cellular activities
BF36_4789	SM00662	RNA polymerases D
BF36_479	SM00725	NEAr Transporter domain
BF36_4793	SM00316	Ribosomal protein S1-like RNA-binding domain
BF36_480	SM00725	NEAr Transporter domain
BF36_4805	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
BF36_4806	SM01374	BF36_4806
BF36_4810	SM00322	K homology RNA-binding domain
BF36_4813	SM01382	BF36_4813
BF36_4813	SM01383	BF36_4813
BF36_4817	SM01403	BF36_4817
BF36_4819	SM00838	Elongation factor G C-terminus
BF36_4819	SM00889	Elongation factor G, domain IV
BF36_4823	SM00663	RNA polymerase I subunit A N-terminus
BF36_4829	SM00649	Ribosomal protein L11/L12
BF36_483	SM00382	ATPases associated with a variety of cellular activities
BF36_4830	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
BF36_4832	SM00421	helix_turn_helix, Lux Regulon
BF36_4834	SM00967	RNA 2'-O ribose methyltransferase substrate binding
BF36_4835	SM00535	Ribonuclease III family
BF36_4836	SM00840	BF36_4836
BF36_4841	SM00670	Large family of predicted nucleotide-binding domains
BF36_4843	SM00382	ATPases associated with a variety of cellular activities
BF36_4844	SM00382	ATPases associated with a variety of cellular activities
BF36_4844	SM01086	C-terminal, D2-small domain, of ClpB protein
BF36_4867	SM00530	Helix-turn-helix XRE-family like proteins 
BF36_4869	SM00905	Dihydroneopterin aldolase
BF36_487	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
BF36_4877	SM00382	ATPases associated with a variety of cellular activities
BF36_4879	SM00977	TilS substrate C-terminal domain
BF36_4880	SM00331	Sigma factor PP2C-like phosphatases
BF36_4880	SM00332	Serine/threonine phosphatases, family 2C, catalytic domain
BF36_4883	SM00316	Ribosomal protein S1-like RNA-binding domain
BF36_4887	SM00363	S4 RNA-binding domain
BF36_4890	SM00966	SpoVT / AbrB like domain 
BF36_4891	SM00487	DEAD-like helicases superfamily
BF36_4891	SM00490	helicase superfamily c-terminal domain
BF36_4891	SM00982	BF36_4891
BF36_4891	SM01058	CarD-like/TRCF domain
BF36_4894	SM01400	BF36_4894
BF36_490	SM00448	cheY-homologous receiver domain
BF36_490	SM00862	Transcriptional regulatory protein, C terminal
BF36_4903	SM00650	Ribosomal RNA adenine dimethylases
BF36_4904	SM00493	BF36_4904
BF36_4907	SM00966	SpoVT / AbrB like domain 
BF36_491	SM00387	Histidine kinase-like ATPases
BF36_491	SM00388	His Kinase A (phosphoacceptor) domain
BF36_492	SM00382	ATPases associated with a variety of cellular activities
BF36_4925	SM00493	BF36_4925
BF36_4927	SM00382	ATPases associated with a variety of cellular activities
BF36_4937	SM00936	Penicillin-binding protein 5, C-terminal domain 
BF36_4938	SM00116	Domain in cystathionine beta-synthase and other proteins.
BF36_4938	SM01240	BF36_4938
BF36_4946	SM00434	DNA Topoisomerase IV
BF36_4947	SM00387	Histidine kinase-like ATPases
BF36_4947	SM00433	TopoisomeraseII
BF36_4950	SM00480	DNA polymerase III beta subunit
BF36_4951	SM00382	ATPases associated with a variety of cellular activities
BF36_4951	SM00760	Bacterial dnaA protein helix-turn-helix domain
BF36_4955	SM00393	Putative single-stranded nucleic acids-binding domain
BF36_4955	SM01245	BF36_4955
BF36_4957	SM01228	BF36_4957
BF36_4959	SM00470	ParB-like nuclease domain
BF36_4961	SM00470	ParB-like nuclease domain
BF36_4970	SM00267	diguanylate cyclase
BF36_4973	SM00788	Adenylosuccinate synthetase
BF36_4978	SM00448	cheY-homologous receiver domain
BF36_4978	SM00862	Transcriptional regulatory protein, C terminal
BF36_4979	SM00091	PAS domain
BF36_4979	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BF36_4979	SM00387	Histidine kinase-like ATPases
BF36_4979	SM00388	His Kinase A (phosphoacceptor) domain
BF36_4982	SM00849	Metallo-beta-lactamase superfamily
BF36_4983	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BF36_4988	SM01240	BF36_4988
BF36_4990	SM00487	DEAD-like helicases superfamily
BF36_4990	SM00490	helicase superfamily c-terminal domain
BF36_5001	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BF36_5001	SM00387	Histidine kinase-like ATPases
BF36_5002	SM00448	cheY-homologous receiver domain
BF36_5002	SM00850	LytTr DNA-binding domain
BF36_5013	SM00382	ATPases associated with a variety of cellular activities
BF36_5018	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BF36_5024	SM00448	cheY-homologous receiver domain
BF36_5024	SM00850	LytTr DNA-binding domain
BF36_5027	SM00267	diguanylate cyclase
BF36_5029	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
BF36_5030	SM00421	helix_turn_helix, Lux Regulon
BF36_5030	SM00448	cheY-homologous receiver domain
BF36_5032	SM00100	Cyclic nucleotide-monophosphate binding domain
BF36_5039	SM00354	helix_turn _helix lactose operon repressor
BF36_504	SM00893	Electron transfer flavoprotein domain
BF36_5041	SM00382	ATPases associated with a variety of cellular activities
BF36_5043	SM00986	Uracil DNA glycosylase superfamily
BF36_5043	SM00987	UreE urease accessory protein, C-terminal domain 
BF36_505	SM00893	Electron transfer flavoprotein domain
BF36_5052	SM00936	Penicillin-binding protein 5, C-terminal domain 
BF36_5061	SM00382	ATPases associated with a variety of cellular activities
BF36_5063	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BF36_5069	SM00422	helix_turn_helix, mercury resistance
BF36_507	SM00465	GIY-YIG type nucleases (URI domain)
BF36_5077	SM00836	DALR anticodon binding domain
BF36_5077	SM01016	Arginyl tRNA synthetase N terminal dom
BF36_5086	SM00382	ATPases associated with a variety of cellular activities
BF36_5089	SM00421	helix_turn_helix, Lux Regulon
BF36_5089	SM00448	cheY-homologous receiver domain
BF36_5091	SM00530	Helix-turn-helix XRE-family like proteins 
BF36_5093	SM00052	Putative diguanylate phosphodiesterase
BF36_5093	SM00267	diguanylate cyclase
BF36_5095	SM00155	Phospholipase D. Active site motifs.
BF36_51	SM00729	Elongator protein 3, MiaB family, Radical SAM
BF36_5105	SM00448	cheY-homologous receiver domain
BF36_5109	SM00357	Cold shock protein domain
BF36_5109	SM00382	ATPases associated with a variety of cellular activities
BF36_5109	SM00959	Rho termination factor, N-terminal domain
BF36_5112	SM00937	BF36_5112
BF36_5120	SM00903	Flavin reductase like domain
BF36_5123	SM00226	Low molecular weight phosphatase family
BF36_5136	SM00382	ATPases associated with a variety of cellular activities
BF36_5140	SM00052	Putative diguanylate phosphodiesterase
BF36_5140	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
BF36_5140	SM00091	PAS domain
BF36_5140	SM00267	diguanylate cyclase
BF36_5156	SM00850	LytTr DNA-binding domain
BF36_5157	SM00382	ATPases associated with a variety of cellular activities
BF36_517	SM00382	ATPases associated with a variety of cellular activities
BF36_5170	SM00984	UDP binding domain
BF36_5172	SM00382	ATPases associated with a variety of cellular activities
BF36_5178	SM00448	cheY-homologous receiver domain
BF36_5178	SM00862	Transcriptional regulatory protein, C terminal
BF36_5179	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BF36_5179	SM00387	Histidine kinase-like ATPases
BF36_5179	SM00388	His Kinase A (phosphoacceptor) domain
BF36_5184	SM00382	ATPases associated with a variety of cellular activities
BF36_5193	SM00487	DEAD-like helicases superfamily
BF36_5193	SM00490	helicase superfamily c-terminal domain
BF36_5199	SM00287	Bacterial SH3 domain homologues
BF36_5205	SM00287	Bacterial SH3 domain homologues
BF36_522	SM00530	Helix-turn-helix XRE-family like proteins 
BF36_5234	SM00754	A domain in the BMP inhibitor chordin and in microbial proteins.
BF36_5235	SM00382	ATPases associated with a variety of cellular activities
BF36_5238	SM00984	UDP binding domain
BF36_5245	SM00487	DEAD-like helicases superfamily
BF36_5245	SM00490	helicase superfamily c-terminal domain
BF36_5247	SM00357	Cold shock protein domain
BF36_5249	SM00957	SecA DEAD-like domain
BF36_5249	SM00958	SecA preprotein cross-linking domain
BF36_5250	SM00937	BF36_5250
BF36_5252	SM00382	ATPases associated with a variety of cellular activities
BF36_5254	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BF36_5254	SM00245	tail specific protease
BF36_5256	SM00382	ATPases associated with a variety of cellular activities
BF36_5258	SM00382	ATPases associated with a variety of cellular activities
BF36_5260	SM00422	helix_turn_helix, mercury resistance
BF36_5263	SM00530	Helix-turn-helix XRE-family like proteins 
BF36_5268	SM00422	helix_turn_helix, mercury resistance
BF36_527	SM00342	helix_turn_helix, arabinose operon control protein
BF36_527	SM00448	cheY-homologous receiver domain
BF36_5271	SM00487	DEAD-like helicases superfamily
BF36_5271	SM00490	helicase superfamily c-terminal domain
BF36_5279	SM00028	Tetratricopeptide repeats
BF36_529	SM00382	ATPases associated with a variety of cellular activities
BF36_5299	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
BF36_53	SM00855	Phosphoglycerate mutase family
BF36_530	SM00382	ATPases associated with a variety of cellular activities
BF36_5303	SM01192	BF36_5303
BF36_5303	SM01193	BF36_5303
BF36_5309	SM00316	Ribosomal protein S1-like RNA-binding domain
BF36_5309	SM00357	Cold shock protein domain
BF36_5309	SM00955	BF36_5309
BF36_5312	SM00448	cheY-homologous receiver domain
BF36_5312	SM00862	Transcriptional regulatory protein, C terminal
BF36_5316	SM00382	ATPases associated with a variety of cellular activities
BF36_5326	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BF36_5327	SM00317	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
BF36_5331	SM00363	S4 RNA-binding domain
BF36_5338	SM01276	BF36_5338
BF36_5339	SM01276	BF36_5339
BF36_5355	SM00347	helix_turn_helix multiple antibiotic resistance protein
BF36_5359	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BF36_5359	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BF36_5360	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BF36_5360	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BF36_5364	SM00387	Histidine kinase-like ATPases
BF36_5364	SM00388	His Kinase A (phosphoacceptor) domain
BF36_5365	SM00448	cheY-homologous receiver domain
BF36_5365	SM00862	Transcriptional regulatory protein, C terminal
BF36_5370	SM00530	Helix-turn-helix XRE-family like proteins 
BF36_5379	SM00422	helix_turn_helix, mercury resistance
BF36_538	SM00421	helix_turn_helix, Lux Regulon
BF36_5392	SM00530	Helix-turn-helix XRE-family like proteins 
BF36_5399	SM00530	Helix-turn-helix XRE-family like proteins 
BF36_5403	SM00530	Helix-turn-helix XRE-family like proteins 
BF36_5404	SM00530	Helix-turn-helix XRE-family like proteins 
BF36_5405	SM01040	BRO family, N-terminal domain
BF36_545	SM00909	Sporulation and spore germination
BF36_5455	SM00646	BF36_5455
BF36_5465	SM00382	ATPases associated with a variety of cellular activities
BF36_5468	SM00530	Helix-turn-helix XRE-family like proteins 
BF36_5473	SM00422	helix_turn_helix, mercury resistance
BF36_5475	SM00857	Resolvase, N terminal domain
BF36_558	SM00382	ATPases associated with a variety of cellular activities
BF36_558	SM00994	ClpX C4-type zinc finger
BF36_558	SM01086	C-terminal, D2-small domain, of ClpB protein
BF36_559	SM00382	ATPases associated with a variety of cellular activities
BF36_56	SM00422	helix_turn_helix, mercury resistance
BF36_560	SM00382	ATPases associated with a variety of cellular activities
BF36_560	SM00464	Found in ATP-dependent protease La (LON)
BF36_563	SM00347	helix_turn_helix multiple antibiotic resistance protein
BF36_568	SM01004	Delta-aminolevulinic acid dehydratase
BF36_570	SM00257	Lysin motif
BF36_588	SM01317	BF36_588
BF36_590	SM00448	cheY-homologous receiver domain
BF36_590	SM00862	Transcriptional regulatory protein, C terminal
BF36_591	SM00387	Histidine kinase-like ATPases
BF36_592	SM00382	ATPases associated with a variety of cellular activities
BF36_602	SM00257	Lysin motif
BF36_605	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BF36_609	SM00278	Helix-hairpin-helix DNA-binding motif class 1
BF36_610	SM00382	ATPases associated with a variety of cellular activities
BF36_614	SM01323	BF36_614
BF36_623	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BF36_623	SM00954	Region found in RelA / SpoT proteins
BF36_63	SM00420	helix_turn_helix, Deoxyribose operon repressor
BF36_630	SM00382	ATPases associated with a variety of cellular activities
BF36_634	SM00028	Tetratricopeptide repeats
BF36_641	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
BF36_643	SM00732	Likely ribonuclease with RNase H fold.
BF36_662	SM00382	ATPases associated with a variety of cellular activities
BF36_667	SM00530	Helix-turn-helix XRE-family like proteins 
BF36_676	SM00855	Phosphoglycerate mutase family
BF36_681	SM00098	Alkaline phosphatase homologues
BF36_683	SM00954	Region found in RelA / SpoT proteins
BF36_694	SM01103	BF36_694
BF36_696	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BF36_700	SM00278	Helix-hairpin-helix DNA-binding motif class 1
BF36_702	SM00849	Metallo-beta-lactamase superfamily
BF36_708	SM00838	Elongation factor G C-terminus
BF36_710	SM00729	Elongator protein 3, MiaB family, Radical SAM
BF36_714	SM00271	DnaJ molecular chaperone homology domain
BF36_717	SM00729	Elongator protein 3, MiaB family, Radical SAM
BF36_723	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
BF36_730	SM00116	Domain in cystathionine beta-synthase and other proteins.
BF36_732	SM00400	zinc finger
BF36_732	SM00493	BF36_732
BF36_732	SM00766	DNA primase DnaG DnaB-binding
BF36_739	SM00487	DEAD-like helicases superfamily
BF36_739	SM00490	helicase superfamily c-terminal domain
BF36_740	SM00518	AP endonuclease family 2
BF36_743	SM00382	ATPases associated with a variety of cellular activities
BF36_756	SM00382	ATPases associated with a variety of cellular activities
BF36_764	SM00849	Metallo-beta-lactamase superfamily
BF36_766	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
BF36_771	SM01018	B12 binding domain
BF36_78	SM00382	ATPases associated with a variety of cellular activities
BF36_781	SM00382	ATPases associated with a variety of cellular activities
BF36_788	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
BF36_795	SM00487	DEAD-like helicases superfamily
BF36_795	SM00490	helicase superfamily c-terminal domain
BF36_8	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
BF36_8	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
BF36_801	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BF36_802	SM00382	ATPases associated with a variety of cellular activities
BF36_812	SM00354	helix_turn _helix lactose operon repressor
BF36_813	SM00450	Rhodanese Homology Domain
BF36_820	SM00529	Helix-turn-helix diphteria tox regulatory element
BF36_827	SM00841	Elongation factor P, C-terminal
BF36_827	SM01185	BF36_827
BF36_831	SM00382	ATPases associated with a variety of cellular activities
BF36_841	SM00878	Biotin carboxylase C-terminal domain
BF36_848	SM00861	Transketolase, pyrimidine binding domain
BF36_849	SM00363	S4 RNA-binding domain
BF36_852	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
BF36_853	SM00448	cheY-homologous receiver domain
BF36_858	SM00091	PAS domain
BF36_858	SM00382	ATPases associated with a variety of cellular activities
BF36_860	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
BF36_864	SM00861	Transketolase, pyrimidine binding domain
BF36_87	SM00871	Bacterial transcription activator, effector binding domain
BF36_870	SM00062	Bacterial periplasmic substrate-binding proteins
BF36_870	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
BF36_872	SM00382	ATPases associated with a variety of cellular activities
BF36_881	SM00849	Metallo-beta-lactamase superfamily
BF36_885	SM00849	Metallo-beta-lactamase superfamily
BF36_888	SM00859	Semialdehyde dehydrogenase, NAD binding domain
BF36_895	SM00347	helix_turn_helix multiple antibiotic resistance protein
BF36_905	SM00729	Elongator protein 3, MiaB family, Radical SAM
BF36_905	SM00876	Biotin and Thiamin Synthesis associated domain
BF36_911	SM00704	CDGSH-type zinc finger. Function unknown.
BF36_915	SM00354	helix_turn _helix lactose operon repressor
BF36_934	SM00941	Pyrimidine nucleoside phosphorylase C-terminal domain
BF36_938	SM00347	helix_turn_helix multiple antibiotic resistance protein
BF36_942	SM00382	ATPases associated with a variety of cellular activities
BF36_943	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BF36_947	SM00387	Histidine kinase-like ATPases
BF36_966	SM00849	Metallo-beta-lactamase superfamily
BF36_969	SM00345	helix_turn_helix gluconate operon transcriptional repressor
BF36_969	SM00866	BF36_969
BF36_971	SM01061	CAT RNA binding domain
BF36_978	SM00267	diguanylate cyclase
BF36_983	SM01007	Class II Aldolase and Adducin N-terminal domain
