locus-tag	class	description
LIT28_00010	COG0592	DNA-directed DNA polymerase activity
LIT28_00015	COG2501	S4 domain
LIT28_00025	COG0187	DNA topoisomerase II activity
LIT28_00030	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
LIT28_00065	COG0516	GMP reductase activity
LIT28_00065	COG0517	IMP dehydrogenase activity
LIT28_00070	COG1686	Belongs to the peptidase S11 family
LIT28_00100	COG1428	Deoxynucleoside kinase
LIT28_00105	COG1428	Deoxynucleoside kinase
LIT28_00110	COG1335	isochorismatase
LIT28_00115	COG0590	tRNA wobble adenosine to inosine editing
LIT28_00125	COG2812	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. This DNA polymerase also exhibits 3' to 5' exonuclease activity
LIT28_00180	COG1982	Orn Lys Arg decarboxylase major
LIT28_00190	COG0470	DNA polymerase III
LIT28_00195	COG1774	PSP1 C-terminal conserved region
LIT28_00205	COG4123	Specifically methylates the adenine in position 37 of tRNA(1)(Val) (anticodon cmo5UAC)
LIT28_00215	COG0313	Catalyzes the 2'-O-methylation of the ribose of cytidine 1402 (C1402) in 16S rRNA
LIT28_00220	COG2002	toxin-antitoxin pair type II binding
LIT28_00230	COG0084	hydrolase, TatD family'
LIT28_00235	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
LIT28_00240	COG0030	16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase activity
LIT28_00250	COG4466	Protein conserved in bacteria
LIT28_00265	COG0503	Catalyzes a salvage reaction resulting in the formation of AMP, that is energically less costly than de novo synthesis
LIT28_00270	COG0251	oxidation-reduction process
LIT28_00275	COG2088	sporulation resulting in formation of a cellular spore
LIT28_00300	COG1197	Couples transcription and DNA repair by recognizing RNA polymerase (RNAP) stalled at DNA lesions. Mediates ATP-dependent release of RNAP and its truncated transcript from the DNA, and recruitment of nucleotide excision repair machinery to the damaged site
LIT28_00305	COG2002	toxin-antitoxin pair type II binding
LIT28_00310	COG2244	polysaccharide biosynthetic process
LIT28_00315	COG3956	TIGRFAM MazG family protein
LIT28_00320	COG1188	Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit, (S4 paralog))
LIT28_00340	COG1098	S1 RNA binding domain
LIT28_00355	COG2208	phosphoserine phosphatase activity
LIT28_00365	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
LIT28_00370	COG0465	Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins
LIT28_00385	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
LIT28_00390	COG0147	Part of a heterotetrameric complex that catalyzes the two-step biosynthesis of anthranilate, an intermediate in the biosynthesis of L-tryptophan. In the first step, the glutamine- binding beta subunit (TrpG) of anthranilate synthase (AS) provides the glutamine amidotransferase activity which generates ammonia as a substrate that, along with chorismate, is used in the second step, catalyzed by the large alpha subunit of AS (TrpE) to produce anthranilate. In the absence of TrpG, TrpE can synthesize anthranilate directly from chorismate and high concentrations of ammonia
LIT28_00395	COG0512	Glutamine amidotransferase of anthranilate synthase
LIT28_00400	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
LIT28_00405	COG0294	Catalyzes the condensation of para-aminobenzoate (pABA) with 6-hydroxymethyl-7,8-dihydropterin diphosphate (DHPt-PP) to form 7,8-dihydropteroate (H2Pte), the immediate precursor of folate derivatives
LIT28_00410	COG1539	Catalyzes the conversion of 7,8-dihydroneopterin to 6- hydroxymethyl-7,8-dihydropterin
LIT28_00415	COG0801	2-amino-4-hydroxy-6-hydroxymethyldihydropteridine pyrophosphokinase
LIT28_00420	COG1396	sequence-specific DNA binding
LIT28_00425	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LIT28_00515	COG3880	PFAM UvrB UvrC protein
LIT28_00525	COG0542	response to heat
LIT28_00530	COG1066	DNA-dependent ATPase involved in processing of recombination intermediates, plays a role in repairing DNA breaks. Stimulates the branch migration of RecA-mediated strand transfer reactions, allowing the 3' invading strand to extend heteroduplex DNA faster. Binds ssDNA in the presence of ADP but not other nucleotides, has ATPase activity that is stimulated by ssDNA and various branched DNA structures, but inhibited by SSB. Does not have RecA's homology-searching function
LIT28_00540	COG4956	integral membrane protein (PIN domain superfamily)
LIT28_00560	COG1045	serine acetyltransferase
LIT28_00575	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LIT28_00580	COG3688	RNA-binding protein containing a PIN domain
LIT28_00595	COG0690	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
LIT28_00600	COG0250	Participates in transcription elongation, termination and antitermination
LIT28_00605	COG0080	Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors
LIT28_00620	COG0222	ribosome binding
LIT28_00625	COG2813	Specifically methylates the guanine in position
LIT28_00635	COG0086	DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates
LIT28_00640	COG1358	cellular component organization or biogenesis
LIT28_00645	COG0048	Interacts with and stabilizes bases of the 16S rRNA that are involved in tRNA selection in the A site and with the mRNA backbone. Located at the interface of the 30S and 50S subunits, it traverses the body of the 30S subunit contacting proteins on the other side and probably holding the rRNA structure together. The combined cluster of proteins S8, S12 and S17 appears to hold together the shoulder and platform of the 30S subunit
LIT28_00665	COG0051	transcription antitermination factor activity, RNA binding
LIT28_00670	COG0087	One of the primary rRNA binding proteins, it binds directly near the 3'-end of the 23S rRNA, where it nucleates assembly of the 50S subunit
LIT28_00685	COG0090	One of the primary rRNA binding proteins. Required for association of the 30S and 50S subunits to form the 70S ribosome, for tRNA binding and peptide bond formation. It has been suggested to have peptidyltransferase activity
LIT28_00710	COG0255	Belongs to the universal ribosomal protein uL29 family
LIT28_00730	COG0094	This is 1 of the proteins that binds and probably mediates the attachment of the 5S RNA into the large ribosomal subunit, where it forms part of the central protuberance. In the 70S ribosome it contacts protein S13 of the 30S subunit (bridge B1b), connecting the 2 subunits
LIT28_00760	COG1841	ribosomal large subunit assembly
LIT28_00770	COG0201	protein transport
LIT28_00780	COG0024	Methionine aminopeptidase
LIT28_00790	COG0257	Belongs to the bacterial ribosomal protein bL36 family
LIT28_00825	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
LIT28_00850	COG0860	N-Acetylmuramoyl-L-alanine amidase
LIT28_00855	COG0489	protein tyrosine kinase activity
LIT28_00865	COG2194	sulfuric ester hydrolase activity
LIT28_00870	COG0726	polysaccharide deacetylase
LIT28_00950	COG1624	Catalyzes the condensation of 2 ATP molecules into cyclic di-AMP (c-di-AMP), a second messenger used to regulate differing processes in different bacteria
LIT28_00955	COG4856	YbbR-like protein
LIT28_00975	COG4946	Tricorn protease homolog
LIT28_00975	COG1506	peptidase
LIT28_00975	COG0823	Involved in the tonB-independent uptake of proteins
LIT28_00990	COG1028	Short-chain dehydrogenase reductase Sdr
LIT28_00995	COG2011	ABC-type metal ion transport system permease component
LIT28_01000	COG1135	Part of the ABC transporter complex MetNIQ involved in methionine import. Responsible for energy coupling to the transport system
LIT28_01005	COG1464	Belongs to the NlpA lipoprotein family
LIT28_01010	COG1063	alcohol dehydrogenase
LIT28_01020	COG0277	FAD linked oxidase domain protein
LIT28_01025	COG2271	Major facilitator Superfamily
LIT28_01035	COG2814	Major facilitator Superfamily
LIT28_01055	COG0601	transmembrane transport
LIT28_01060	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LIT28_01065	COG0444	Belongs to the ABC transporter superfamily
LIT28_01070	COG4608	Belongs to the ABC transporter superfamily
LIT28_01075	COG4166	transmembrane transport
LIT28_01085	COG2207	Transcriptional regulator
LIT28_01100	COG4166	transmembrane transport
LIT28_01105	COG4166	transmembrane transport
LIT28_01110	COG0656	L-ascorbic acid biosynthetic process
LIT28_01125	COG4149	molybdate abc transporter
LIT28_01130	COG0725	ABC transporter, periplasmic molybdate-binding protein
LIT28_01135	COG1910	domain protein
LIT28_01150	COG0697	spore germination
LIT28_01165	COG0204	Acyl-transferase
LIT28_01175	COG1609	Transcriptional regulator
LIT28_01185	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
LIT28_01205	COG5298	Protein conserved in bacteria
LIT28_01230	COG0488	(ABC) transporter
LIT28_01240	COG0747	negative chemotaxis
LIT28_01245	COG0747	negative chemotaxis
LIT28_01250	COG0601	transmembrane transport
LIT28_01255	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LIT28_01260	COG0444	Belongs to the ABC transporter superfamily
LIT28_01265	COG4608	Belongs to the ABC transporter superfamily
LIT28_01270	COG0561	phosphatase activity
LIT28_01300	COG3185	4-Hydroxyphenylpyruvate dioxygenase
LIT28_01305	COG0179	Fumarylacetoacetate (FAA) hydrolase
LIT28_01315	COG0531	amino acid
LIT28_01330	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
LIT28_01340	COG4294	response to UV
LIT28_01345	COG0705	Rhomboid family
LIT28_01355	COG2834	Participates in the translocation of lipoproteins from the inner membrane to the outer membrane. Only forms a complex with a lipoprotein if the residue after the N-terminal Cys is not an aspartate (The Asp acts as a targeting signal to indicate that the lipoprotein should stay in the inner membrane)
LIT28_01360	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
LIT28_01365	COG0864	Transcriptional regulator
LIT28_01370	COG2337	Toxic component of a toxin-antitoxin (TA) module
LIT28_01375	COG2183	response to ionizing radiation
LIT28_01475	COG0802	atpase or kinase
LIT28_01480	COG1214	PFAM Peptidase M22, glycoprotease
LIT28_01485	COG0456	acetyltransferase
LIT28_01495	COG0488	(ABC) transporter
LIT28_01510	COG1266	CAAX protease self-immunity
LIT28_01520	COG0459	protein refolding
LIT28_01530	COG2252	PERMEase
LIT28_01540	COG5002	protein histidine kinase activity
LIT28_01565	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
LIT28_01595	COG2226	methyltransferase
LIT28_01615	COG1215	transferase activity, transferring glycosyl groups
LIT28_01650	COG2205	protein histidine kinase activity
LIT28_01655	COG0745	RESPONSE REGULATOR receiver
LIT28_01675	COG0697	spore germination
LIT28_01705	COG0041	Catalyzes the conversion of N5-carboxyaminoimidazole ribonucleotide (N5-CAIR) to 4-carboxy-5-aminoimidazole ribonucleotide (CAIR)
LIT28_01710	COG0026	Catalyzes the ATP-dependent conversion of 5- aminoimidazole ribonucleotide (AIR) and HCO(3)(-) to N5- carboxyaminoimidazole ribonucleotide (N5-CAIR)
LIT28_01715	COG0015	Belongs to the lyase 1 family. Adenylosuccinate lyase subfamily
LIT28_01725	COG1828	Part of the phosphoribosylformylglycinamidine synthase complex involved in the purines biosynthetic pathway. Catalyzes the ATP-dependent conversion of formylglycinamide ribonucleotide (FGAR) and glutamine to yield formylglycinamidine ribonucleotide (FGAM) and glutamate. The FGAM synthase complex is composed of three subunits. PurQ produces an ammonia molecule by converting glutamine to glutamate. PurL transfers the ammonia molecule to FGAR to form FGAM in an ATP-dependent manner. PurS interacts with PurQ and PurL and is thought to assist in the transfer of the ammonia molecule from PurQ to PurL
LIT28_01740	COG0034	Catalyzes the formation of phosphoribosylamine from phosphoribosylpyrophosphate (PRPP) and glutamine
LIT28_01750	COG0299	Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate
LIT28_01760	COG0151	Belongs to the GarS family
LIT28_01785	COG0210	DNA helicase
LIT28_01795	COG4851	CamS sex pheromone cAM373 precursor
LIT28_01815	COG1335	isochorismatase
LIT28_01825	COG2011	ABC-type metal ion transport system permease component
LIT28_01830	COG1464	Belongs to the NlpA lipoprotein family
LIT28_01845	COG0003	Pfam Anion-transporting ATPase
LIT28_01850	COG1846	Transcriptional regulator
LIT28_01855	COG4682	membrane
LIT28_01875	COG1597	lipid kinase activity
LIT28_01880	COG0546	phosphoglycolate phosphatase activity
LIT28_01885	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
LIT28_01895	COG1012	belongs to the aldehyde dehydrogenase family
LIT28_01900	COG2076	Multidrug Resistance protein
LIT28_01905	COG2309	aminopeptidase activity
LIT28_01920	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
LIT28_01925	COG2265	Belongs to the class I-like SAM-binding methyltransferase superfamily. RNA M5U methyltransferase family
LIT28_01930	COG0042	Catalyzes the synthesis of 5,6-dihydrouridine (D), a modified base found in the D-loop of most tRNAs, via the reduction of the C5-C6 double bond in target uridines
LIT28_01935	COG5002	protein histidine kinase activity
LIT28_01940	COG4807	Protein conserved in bacteria
LIT28_01965	COG1757	Na H antiporter
LIT28_01970	COG1473	amidohydrolase
LIT28_01985	COG0450	alkyl hydroperoxide reductase
LIT28_01995	COG0182	Catalyzes the interconversion of methylthioribose-1- phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1- P)
LIT28_02005	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LIT28_02010	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LIT28_02015	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
LIT28_02020	COG0492	ferredoxin-NADP+ reductase activity
LIT28_02030	COG0166	Belongs to the GPI family
LIT28_02075	COG3541	Predicted nucleotidyltransferase
LIT28_02085	COG2801	Transposase and inactivated derivatives
LIT28_02090	COG2814	Major facilitator Superfamily
LIT28_02095	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LIT28_02095	COG0723	plastoquinol--plastocyanin reductase activity
LIT28_02105	COG0765	amino acid transport
LIT28_02110	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LIT28_02120	COG0840	transmembrane signaling receptor activity
LIT28_02125	COG0277	FAD linked oxidase domain protein
LIT28_02130	COG0366	Alpha amylase catalytic
LIT28_02135	COG1263	PTS System
LIT28_02135	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LIT28_02135	COG2190	(PTS) system
LIT28_02165	COG2704	Responsible for the transport of C4-dicarboxylates from the periplasm across the inner membrane
LIT28_02180	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LIT28_02190	COG1116	anion transmembrane transporter activity
LIT28_02195	COG0488	(ABC) transporter
LIT28_02245	COG2270	Major facilitator Superfamily
LIT28_02275	COG2310	stress, protein
LIT28_02280	COG2310	stress, protein
LIT28_02285	COG2310	stress, protein
LIT28_02290	COG0861	Integral membrane protein TerC family
LIT28_02300	COG3853	Toxic anion resistance protein (TelA)
LIT28_02315	COG0394	Belongs to the low molecular weight phosphotyrosine protein phosphatase family
LIT28_02325	COG1295	ribonuclease BN
LIT28_02330	COG2217	Heavy metal translocating P-type atpase
LIT28_02335	COG0697	spore germination
LIT28_02355	COG0586	Pfam SNARE associated Golgi protein
LIT28_02370	COG3871	stress protein (general stress protein 26)
LIT28_02375	COG0387	Pfam Sodium calcium exchanger
LIT28_02385	COG0535	radical SAM domain protein
LIT28_02405	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
LIT28_02425	COG3829	transcription factor binding
LIT28_02435	COG0833	amino acid
LIT28_02440	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LIT28_02470	COG1263	PTS System
LIT28_02470	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LIT28_02475	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
LIT28_02495	COG0463	Glycosyl transferase, family 2
LIT28_02505	COG0223	Attaches a formyl group to the free amino group of methionyl-tRNA(fMet). The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and preventing the misappropriation of this tRNA by the elongation apparatus
LIT28_02505	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LIT28_02510	COG0463	Glycosyl transferase, family 2
LIT28_02525	COG1180	Activation of pyruvate formate-lyase under anaerobic conditions by generation of an organic free radical, using S- adenosylmethionine and reduced flavodoxin as cosubstrates to produce 5'-deoxy-adenosine
LIT28_02545	COG1228	amidohydrolase
LIT28_02550	COG1090	epimerase
LIT28_02580	COG1988	membrane-bound metal-dependent
LIT28_02585	COG1194	a g-specific adenine glycosylase
LIT28_02610	COG1132	(ABC) transporter
LIT28_02615	COG4129	membrane
LIT28_02620	COG0067	glutamate synthase
LIT28_02620	COG0069	glutamate synthase activity
LIT28_02620	COG0070	glutamate synthase
LIT28_02630	COG4555	ABC transporter
LIT28_02650	COG1225	Alkyl hydroperoxide reductase Thiol specific antioxidant Mal allergen
LIT28_02655	COG0735	belongs to the Fur family
LIT28_02770	COG5009	serine-type D-Ala-D-Ala carboxypeptidase activity
LIT28_02775	COG1651	Required for disulfide bond formation in some periplasmic proteins. Acts by transferring its disulfide bond to other proteins and is reduced in the process
LIT28_02795	COG0219	Methylates the ribose at the nucleotide 34 wobble position in the two leucyl isoacceptors tRNA(Leu)(CmAA) and tRNA(Leu)(cmnm5UmAA). Catalyzes the methyl transfer from S- adenosyl-L-methionine to the 2'-OH of the wobble nucleotide
LIT28_02800	COG5001	Diguanylate cyclase
LIT28_02800	COG1716	ATPase activity
LIT28_02805	COG2766	serine protein kinase
LIT28_02825	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
LIT28_02835	COG1585	Membrane protein implicated in regulation of membrane protease activity
LIT28_02840	COG2268	Band 7 protein
LIT28_02850	COG3290	protein histidine kinase activity
LIT28_02855	COG4565	transcriptional regulatory protein
LIT28_02860	COG2851	Citrate transporter
LIT28_02880	COG0639	Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP
LIT28_02885	COG0745	RESPONSE REGULATOR receiver
LIT28_02890	COG5002	protein histidine kinase activity
LIT28_02900	COG4990	cell redox homeostasis
LIT28_02910	COG3290	protein histidine kinase activity
LIT28_02915	COG4565	transcriptional regulatory protein
LIT28_02920	COG3493	citrate carrier protein
LIT28_02925	COG0281	malic enzyme
LIT28_02940	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LIT28_02950	COG5002	protein histidine kinase activity
LIT28_02955	COG0745	RESPONSE REGULATOR receiver
LIT28_02965	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
LIT28_02970	COG3383	formate dehydrogenase (NAD+) activity
LIT28_02975	COG2427	Protein of unknown function (DUF1641)
LIT28_02990	COG0531	amino acid
LIT28_02995	COG0640	Transcriptional regulator
LIT28_03000	COG2217	Heavy metal translocating P-type atpase
LIT28_03005	COG1488	Catalyzes the synthesis of beta-nicotinate D- ribonucleotide from nicotinate and 5-phospho-D-ribose 1-phosphate at the expense of ATP
LIT28_03020	COG3227	Zinc metalloprotease (Elastase)
LIT28_03040	COG2720	vancomycin resistance protein
LIT28_03045	COG1316	TRANSCRIPTIONal
LIT28_03050	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
LIT28_03055	COG0346	lactoylglutathione lyase activity
LIT28_03060	COG1253	flavin adenine dinucleotide binding
LIT28_03065	COG1027	Aspartate ammonia-lyase
LIT28_03070	COG1620	l-lactate permease
LIT28_03085	COG3104	oligopeptide transport
LIT28_03090	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
LIT28_03095	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LIT28_03100	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LIT28_03110	COG2226	methyltransferase
LIT28_03115	COG0156	8-amino-7-oxononanoate synthase activity
LIT28_03120	COG0451	ADP-glyceromanno-heptose 6-epimerase activity
LIT28_03125	COG0461	Catalyzes the transfer of a ribosyl phosphate group from 5-phosphoribose 1-diphosphate to orotate, leading to the formation of orotidine monophosphate (OMP)
LIT28_03135	COG4548	von Willebrand factor, type A
LIT28_03140	COG0714	Associated with various cellular activities
LIT28_03145	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LIT28_03160	COG0531	amino acid
LIT28_03165	COG2188	Transcriptional regulator
LIT28_03170	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LIT28_03170	COG1263	PTS System
LIT28_03175	COG0366	Alpha amylase catalytic
LIT28_03190	COG0697	spore germination
LIT28_03195	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
LIT28_03200	COG1115	amino acid carrier protein
LIT28_03205	COG1126	abc transporter atp-binding protein
LIT28_03210	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LIT28_03215	COG0765	amino acid transport
LIT28_03220	COG0765	amino acid transport
LIT28_03225	COG0833	amino acid
LIT28_03250	COG2378	regulation of single-species biofilm formation
LIT28_03255	COG0262	Key enzyme in folate metabolism. Catalyzes an essential reaction for de novo glycine and purine synthesis, and for DNA precursor synthesis
LIT28_03260	COG5002	protein histidine kinase activity
LIT28_03275	COG0659	secondary active sulfate transmembrane transporter activity
LIT28_03300	COG0601	transmembrane transport
LIT28_03305	COG4608	Belongs to the ABC transporter superfamily
LIT28_03315	COG2271	Major facilitator Superfamily
LIT28_03320	COG1846	Transcriptional regulator
LIT28_03325	COG0477	Major facilitator Superfamily
LIT28_03330	COG1609	Transcriptional regulator
LIT28_03335	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LIT28_03350	COG1172	Belongs to the binding-protein-dependent transport system permease family
LIT28_03355	COG1879	ABC-type sugar transport system periplasmic component
LIT28_03380	COG1063	alcohol dehydrogenase
LIT28_03395	COG3568	Endonuclease Exonuclease Phosphatase
LIT28_03425	COG0840	transmembrane signaling receptor activity
LIT28_03430	COG1388	LysM domain
LIT28_03430	COG3584	3D domain protein
LIT28_03435	COG1476	TRANSCRIPTIONal
LIT28_03450	COG3104	oligopeptide transport
LIT28_03455	COG1114	Component of the transport system for branched-chain amino acids
LIT28_03470	COG1113	amino acid transport
LIT28_03475	COG2252	PERMEase
LIT28_03490	COG2153	protein acetylation
LIT28_03500	COG0569	domain protein
LIT28_03500	COG0475	glutathione-regulated potassium exporter activity
LIT28_03515	COG0843	Cytochrome c oxidase is the component of the respiratory chain that catalyzes the reduction of oxygen to water. Subunits 1- 3 form the functional core of the enzyme complex. CO I is the catalytic subunit of the enzyme. Electrons originating in cytochrome c are transferred via the copper A center of subunit 2 and heme A of subunit 1 to the bimetallic center formed by heme A3 and copper B
LIT28_03520	COG1622	oxidoreductase activity, acting on a heme group of donors, oxygen as acceptor
LIT28_03525	COG0833	amino acid
LIT28_03530	COG4990	cell redox homeostasis
LIT28_03545	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LIT28_03550	COG0697	spore germination
LIT28_03555	COG0531	amino acid
LIT28_03565	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
LIT28_03570	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
LIT28_03575	COG0370	Transporter of a GTP-driven Fe(2 ) uptake system
LIT28_03575	COG1918	ferrous iron import across plasma membrane
LIT28_03580	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
LIT28_03585	COG0573	inorganic phosphate transmembrane transporter activity
LIT28_03590	COG0581	inorganic phosphate transmembrane transporter activity
LIT28_03600	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LIT28_03720	COG2905	signal-transduction protein containing cAMP-binding and CBS domains
LIT28_03740	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
LIT28_03745	COG1116	anion transmembrane transporter activity
LIT28_03750	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LIT28_03755	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LIT28_03760	COG0352	thiamine-phosphate diphosphorylase activity
LIT28_03765	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LIT28_03770	COG2104	thiamine diphosphate biosynthetic process
LIT28_03780	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
LIT28_03785	COG0351	phosphomethylpyrimidine kinase
LIT28_03820	COG2205	protein histidine kinase activity
LIT28_03825	COG2814	Major facilitator Superfamily
LIT28_03830	COG1846	Transcriptional regulator
LIT28_03845	COG2252	PERMEase
LIT28_03850	COG1028	Short-chain dehydrogenase reductase Sdr
LIT28_03865	COG0524	Catalyzes the phosphorylation of ribose at O-5 in a reaction requiring ATP and magnesium. The resulting D-ribose-5- phosphate can then be used either for sythesis of nucleotides, histidine, and tryptophan, or as a component of the pentose phosphate pathway
LIT28_03870	COG1621	beta-fructofuranosidase activity
LIT28_03875	COG1263	PTS System
LIT28_03875	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LIT28_03880	COG1609	Transcriptional regulator
LIT28_03890	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LIT28_03930	COG0778	Nitroreductase
LIT28_03935	COG2719	SpoVR family
LIT28_03960	COG0446	pyridine nucleotide-disulphide oxidoreductase
LIT28_03965	COG1937	Protein conserved in bacteria
LIT28_03970	COG0425	Belongs to the sulfur carrier protein TusA family
LIT28_03970	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LIT28_03975	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LIT28_03975	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LIT28_03980	COG0425	Belongs to the sulfur carrier protein TusA family
LIT28_03985	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LIT28_03995	COG2210	Belongs to the sulfur carrier protein TusA family
LIT28_04000	COG0730	response to heat
LIT28_04010	COG1316	TRANSCRIPTIONal
LIT28_04015	COG0604	alcohol dehydrogenase
LIT28_04020	COG1283	sodium-dependent phosphate transmembrane transporter activity
LIT28_04035	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
LIT28_04035	COG3711	transcriptional antiterminator
LIT28_04040	COG1447	Phosphotransferase system cellobiose-specific component IIA
LIT28_04045	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
LIT28_04065	COG3584	3D domain protein
LIT28_04065	COG1388	LysM domain
LIT28_04070	COG0577	efflux transmembrane transporter activity
LIT28_04075	COG1136	(ABC) transporter
LIT28_04085	COG5522	Integral membrane protein (intg_mem_TP0381)
LIT28_04100	COG1114	Component of the transport system for branched-chain amino acids
LIT28_04105	COG3546	catalase activity
LIT28_04140	COG0586	Pfam SNARE associated Golgi protein
LIT28_04180	COG0531	amino acid
LIT28_04185	COG0475	glutathione-regulated potassium exporter activity
LIT28_04195	COG1737	Transcriptional regulator
LIT28_04205	COG1263	PTS System
LIT28_04205	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LIT28_04215	COG2259	Doxx family
LIT28_04235	COG1522	sequence-specific DNA binding
LIT28_04250	COG2076	Multidrug Resistance protein
LIT28_04255	COG1309	transcriptional regulator
LIT28_04260	COG2814	Major facilitator Superfamily
LIT28_04265	COG0693	protein deglycase activity
LIT28_04270	COG0753	catalase activity
LIT28_04280	COG0531	amino acid
LIT28_04285	COG0796	Provides the (R)-glutamate required for cell wall biosynthesis
LIT28_04295	COG1012	belongs to the aldehyde dehydrogenase family
LIT28_04300	COG1132	(ABC) transporter
LIT28_04305	COG1132	(ABC) transporter
LIT28_04310	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LIT28_04315	COG0765	amino acid transport
LIT28_04320	COG1126	abc transporter atp-binding protein
LIT28_04335	COG0189	ligase activity
LIT28_04365	COG0028	Belongs to the TPP enzyme family
LIT28_04370	COG3527	Alpha-acetolactate decarboxylase
LIT28_04380	COG0561	phosphatase activity
LIT28_04390	COG3409	Peptidoglycan-binding domain 1 protein
LIT28_04390	COG5632	N-Acetylmuramoyl-L-alanine amidase
LIT28_04395	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LIT28_04400	COG0318	PFAM AMP-dependent synthetase and ligase
LIT28_04410	COG0659	secondary active sulfate transmembrane transporter activity
LIT28_04425	COG0653	protein targeting
LIT28_04430	COG2244	polysaccharide biosynthetic process
LIT28_04440	COG0860	N-Acetylmuramoyl-L-alanine amidase
LIT28_04445	COG4196	transglutaminase domain protein
LIT28_04465	COG1024	Enoyl-CoA hydratase
LIT28_04485	COG1363	Peptidase, m42
LIT28_04495	COG2801	Transposase and inactivated derivatives
LIT28_04525	COG2031	fatty acid transporter
LIT28_04530	COG0477	Major facilitator Superfamily
LIT28_04535	COG3290	protein histidine kinase activity
LIT28_04540	COG4565	transcriptional regulatory protein
LIT28_04545	COG3181	Tripartite tricarboxylate transporter family receptor
LIT28_04550	COG0494	nUDIX hydrolase
LIT28_04565	COG1061	Type III restriction enzyme res subunit
LIT28_04600	COG0305	Participates in initiation and elongation during chromosome replication
LIT28_04625	COG0477	Major facilitator Superfamily
LIT28_04670	COG2801	Transposase and inactivated derivatives
LIT28_04715	COG1183	phosphatidylcholine synthase activity
LIT28_04740	COG2376	Dihydroxyacetone kinase
LIT28_04750	COG2376	Dihydroxyacetone kinase
LIT28_04760	COG1959	2 iron, 2 sulfur cluster binding
LIT28_04780	COG3437	response regulator, receiver
LIT28_04780	COG2770	Histidine kinase
LIT28_04800	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
LIT28_04810	COG0583	DNA-binding transcription factor activity
LIT28_04860	COG1136	(ABC) transporter
LIT28_04865	COG0577	efflux transmembrane transporter activity
LIT28_04895	COG3237	CsbD-like
LIT28_04915	COG2172	sigma factor antagonist activity
LIT28_04920	COG1191	sigma factor activity
LIT28_04930	COG2208	phosphoserine phosphatase activity
LIT28_04935	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
LIT28_04940	COG2198	Histidine kinase
LIT28_04940	COG2205	protein histidine kinase activity
LIT28_04940	COG0784	Response regulator, receiver
LIT28_04940	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LIT28_04980	COG4585	Histidine kinase
LIT28_04985	COG2197	response regulator
LIT28_05015	COG0420	3'-5' exonuclease activity
LIT28_05020	COG4717	serine-type aminopeptidase activity
LIT28_05055	COG0346	lactoylglutathione lyase activity
LIT28_05060	COG0346	lactoylglutathione lyase activity
LIT28_05065	COG2267	carboxylic ester hydrolase activity
LIT28_05085	COG1954	Regulates expression of the glpD operon. In the presence of glycerol 3-phosphate (G3P) causes antitermination of transcription of glpD at the inverted repeat of the leader region to enhance its transcription. Binds and stabilizes glpD leader mRNA
LIT28_05090	COG0580	Belongs to the MIP aquaporin (TC 1.A.8) family
LIT28_05100	COG0578	Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family
LIT28_05120	COG0772	Belongs to the SEDS family
LIT28_05135	COG0477	Major facilitator Superfamily
LIT28_05140	COG0477	Major facilitator Superfamily
LIT28_05150	COG3973	AAA domain
LIT28_05155	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LIT28_05175	COG4980	gas vesicle protein
LIT28_05180	COG0537	adenosine 5'-monophosphoramidase activity
LIT28_05185	COG1131	(ABC) transporter
LIT28_05190	COG4473	ABC transporter
LIT28_05220	COG1309	transcriptional regulator
LIT28_05230	COG3402	PFAM membrane-flanked domain
LIT28_05235	COG3428	Bacterial PH domain
LIT28_05275	COG0789	Transcriptional regulator
LIT28_05285	COG3402	PFAM membrane-flanked domain
LIT28_05290	COG3428	Bacterial PH domain
LIT28_05295	COG2329	Antibiotic biosynthesis monooxygenase
LIT28_05300	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LIT28_05315	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
LIT28_05350	COG1309	transcriptional regulator
LIT28_05355	COG1511	domain protein
LIT28_05385	COG2378	regulation of single-species biofilm formation
LIT28_05390	COG1609	Transcriptional regulator
LIT28_05400	COG1234	tRNA 3'-trailer cleavage
LIT28_05405	COG0095	Lipoate-protein ligase
LIT28_05415	COG0318	PFAM AMP-dependent synthetase and ligase
LIT28_05445	COG1408	metallophosphoesterase
LIT28_05450	COG1078	dGTPase activity
LIT28_05460	COG2801	Transposase and inactivated derivatives
LIT28_05470	COG1595	DNA-templated transcription, initiation
LIT28_05475	COG2207	Transcriptional regulator
LIT28_05475	COG3708	Transcriptional regulator
LIT28_05485	COG2205	protein histidine kinase activity
LIT28_05490	COG0745	RESPONSE REGULATOR receiver
LIT28_05515	COG0501	Belongs to the peptidase M48B family
LIT28_05520	COG0840	transmembrane signaling receptor activity
LIT28_05525	COG0697	spore germination
LIT28_05545	COG2225	Involved in the glycolate utilization. Catalyzes the condensation and subsequent hydrolysis of acetyl-coenzyme A (acetyl-CoA) and glyoxylate to form malate and CoA
LIT28_05550	COG2224	Isocitrate lyase
LIT28_05580	COG4903	ComK protein
LIT28_05585	COG0398	Pfam SNARE associated Golgi protein
LIT28_05645	COG0179	Fumarylacetoacetate (FAA) hydrolase
LIT28_05670	COG0367	asparagine synthase
LIT28_05680	COG0753	catalase activity
LIT28_05685	COG0004	ammonium transporteR
LIT28_05710	COG2996	Protein conserved in bacteria
LIT28_05715	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LIT28_05725	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
LIT28_05740	COG0561	phosphatase activity
LIT28_05760	COG2267	carboxylic ester hydrolase activity
LIT28_05780	COG0304	beta-ketoacyl-acyl-carrier-protein synthase II activity
LIT28_05785	COG5504	Zn-dependent protease
LIT28_05795	COG0180	Tryptophanyl-tRNA synthetase
LIT28_05805	COG4166	transmembrane transport
LIT28_05810	COG0601	transmembrane transport
LIT28_05815	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LIT28_05820	COG0444	Belongs to the ABC transporter superfamily
LIT28_05825	COG4608	Belongs to the ABC transporter superfamily
LIT28_05830	COG0534	Mate efflux family protein
LIT28_05835	COG4166	transmembrane transport
LIT28_05850	COG0861	Integral membrane protein TerC family
LIT28_05855	COG4862	establishment of competence for transformation
LIT28_05860	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LIT28_05870	COG1164	Oligoendopeptidase f
LIT28_05885	COG2346	COG2346, Truncated hemoglobins
LIT28_05890	COG4116	CYTH
LIT28_05900	COG2357	RelA SpoT domain protein
LIT28_05910	COG0564	pseudouridine synthase activity
LIT28_05925	COG0772	Belongs to the SEDS family
LIT28_05930	COG1216	Glycosyl transferase, family 2
LIT28_05950	COG0457	Tetratricopeptide repeat
LIT28_05950	COG0463	Glycosyl transferase, family 2
LIT28_05970	COG1209	Catalyzes the formation of dTDP-glucose, from dTTP and glucose 1-phosphate, as well as its pyrophosphorolysis
LIT28_05985	COG1091	dTDP-4-dehydrorhamnose reductase activity
LIT28_06030	COG2153	protein acetylation
LIT28_06040	COG2382	esterase
LIT28_06055	COG5492	domain, Protein
LIT28_06060	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LIT28_06070	COG0547	Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'-phosphoribosyl)-anthranilate (PRA)
LIT28_06070	COG0512	Glutamine amidotransferase of anthranilate synthase
LIT28_06105	COG1620	l-lactate permease
LIT28_06110	COG5634	Uncharacterized conserved protein (DUF2278)
LIT28_06175	COG0508	dehydrogenase complex catalyzes the overall conversion of
LIT28_06185	COG1476	TRANSCRIPTIONal
LIT28_06260	COG1686	Belongs to the peptidase S11 family
LIT28_06265	COG0681	Belongs to the peptidase S26 family
LIT28_06300	COG1012	belongs to the aldehyde dehydrogenase family
LIT28_06310	COG1176	ABC-type spermidine putrescine transport system, permease component I
LIT28_06315	COG1177	transmembrane transport
LIT28_06320	COG0687	Required for the activity of the bacterial periplasmic transport system of putrescine
LIT28_06330	COG2409	Drug exporters of the RND superfamily
LIT28_06340	COG0564	pseudouridine synthase activity
LIT28_06350	COG2340	Cysteine-rich secretory protein family
LIT28_06355	COG0247	lactate metabolic process
LIT28_06360	COG0277	FAD linked oxidase domain protein
LIT28_06365	COG3835	regulator
LIT28_06375	COG0745	RESPONSE REGULATOR receiver
LIT28_06380	COG5002	protein histidine kinase activity
LIT28_06385	COG2186	Transcriptional regulator
LIT28_06405	COG1989	Cleaves type-4 fimbrial leader sequence and methylates the N-terminal (generally Phe) residue
LIT28_06415	COG2116	formate transmembrane transporter activity
LIT28_06420	COG0861	Integral membrane protein TerC family
LIT28_06425	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
LIT28_06435	COG2030	dehydratase
LIT28_06455	COG1028	Short-chain dehydrogenase reductase Sdr
LIT28_06460	COG3243	poly(R)-hydroxyalkanoic acid synthase
LIT28_06465	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LIT28_06470	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
LIT28_06485	COG1840	ABC-type Fe3 transport system, periplasmic component
LIT28_06490	COG3842	ATPase activity
LIT28_06515	COG1349	DNA-binding transcription factor activity
LIT28_06525	COG0235	Class ii aldolase
LIT28_06535	COG2861	carbohydrate metabolic process
LIT28_06545	COG3852	Histidine kinase
LIT28_06550	COG1846	Transcriptional regulator
LIT28_06560	COG2318	DinB family
LIT28_06570	COG5002	protein histidine kinase activity
LIT28_06580	COG0720	synthase
LIT28_06595	COG4873	Protein conserved in bacteria
LIT28_06625	COG1780	Probably involved in ribonucleotide reductase function
LIT28_06640	COG0208	Provides the precursors necessary for DNA synthesis. Catalyzes the biosynthesis of deoxyribonucleotides from the corresponding ribonucleotides
LIT28_06645	COG1725	Transcriptional regulator
LIT28_06650	COG1131	(ABC) transporter
LIT28_06660	COG1131	(ABC) transporter
LIT28_06665	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
LIT28_06680	COG1522	sequence-specific DNA binding
LIT28_06690	COG1335	isochorismatase
LIT28_06700	COG1619	proteins homologs of microcin C7 resistance protein MccF
LIT28_06705	COG2070	2-Nitropropane dioxygenase
LIT28_06710	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
LIT28_06720	COG1696	Membrane protein involved in D-alanine export
LIT28_06745	COG0716	FMN binding
LIT28_06780	COG0534	Mate efflux family protein
LIT28_06785	COG1968	undecaprenyl-diphosphatase activity
LIT28_06800	COG1846	Transcriptional regulator
LIT28_06810	COG1301	dicarboxylic acid transport
LIT28_06815	COG0168	Low-affinity potassium transport system. Interacts with trk system potassium uptake protein TrkA
LIT28_06820	COG4709	membrane
LIT28_06825	COG3874	Sporulation protein YtfJ
LIT28_06845	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
LIT28_06850	COG0028	Belongs to the TPP enzyme family
LIT28_06855	COG0440	acetolactate synthase activity
LIT28_06930	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
LIT28_06940	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
LIT28_06945	COG1183	phosphatidylcholine synthase activity
LIT28_06950	COG1368	sulfuric ester hydrolase activity
LIT28_06960	COG0019	diaminopimelate decarboxylase activity
LIT28_06980	COG0529	Catalyzes the synthesis of activated sulfate
LIT28_06985	COG0155	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LIT28_07005	COG1648	precorrin-2 dehydrogenase activity
LIT28_07010	COG0733	neurotransmitter:sodium symporter activity
LIT28_07030	COG1757	Na H antiporter
LIT28_07045	COG4758	membrane
LIT28_07050	COG4585	Histidine kinase
LIT28_07055	COG2197	response regulator
LIT28_07065	COG1114	Component of the transport system for branched-chain amino acids
LIT28_07075	COG2226	methyltransferase
LIT28_07115	COG0730	response to heat
LIT28_07120	COG0306	phosphate transporter
LIT28_07125	COG1392	Phosphate transport regulator
LIT28_07130	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LIT28_07145	COG3852	Histidine kinase
LIT28_07150	COG1801	Protein of unknown function DUF72
LIT28_07160	COG0582	viral genome integration into host DNA
LIT28_07165	COG5002	protein histidine kinase activity
LIT28_07180	COG2898	Catalyzes the transfer of a lysyl group from L-lysyl- tRNA(Lys) to membrane-bound phosphatidylglycerol (PG), which produces lysylphosphatidylglycerol (LPG), a major component of the bacterial membrane with a positive net charge. LPG synthesis contributes to bacterial virulence as it is involved in the resistance mechanism against cationic antimicrobial peptides (CAMP) produces by the host's immune system (defensins, cathelicidins) and by the competing microorganisms
LIT28_07180	COG0392	lysyltransferase activity
LIT28_07195	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
LIT28_07200	COG1686	Belongs to the peptidase S11 family
LIT28_07205	COG2715	membrane protein required for spore maturation
LIT28_07210	COG0700	Nucleoside recognition
LIT28_07215	COG1187	pseudouridine synthase activity
LIT28_07225	COG1333	cytochrome c biogenesis protein
LIT28_07230	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
LIT28_07235	COG0745	RESPONSE REGULATOR receiver
LIT28_07240	COG5002	protein histidine kinase activity
LIT28_07245	COG2096	Adenosyltransferase
LIT28_07250	COG4942	peptidase
LIT28_07260	COG3601	Mediates riboflavin uptake, may also transport FMN and roseoflavin. Probably a riboflavin-binding protein that interacts with the energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. The substrates themselves are bound by transmembrane, not extracytoplasmic soluble proteins
LIT28_07265	COG1141	Ferredoxin
LIT28_07275	COG0514	ATP-dependent DNA helicase (RecQ)
LIT28_07280	COG1266	CAAX protease self-immunity
LIT28_07290	COG1408	metallophosphoesterase
LIT28_07300	COG4862	establishment of competence for transformation
LIT28_07305	COG0334	Belongs to the Glu Leu Phe Val dehydrogenases family
LIT28_07325	COG0492	ferredoxin-NADP+ reductase activity
LIT28_07375	COG1160	GTP binding
LIT28_07400	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
LIT28_07415	COG0142	geranyltranstransferase activity
LIT28_07425	COG0142	geranyltranstransferase activity
LIT28_07450	COG0457	Tetratricopeptide repeat
LIT28_07470	COG1290	Component of the ubiquinol-cytochrome c reductase complex (complex III or cytochrome b-c1 complex), which is a respiratory chain that generates an electrochemical potential coupled to ATP synthesis
LIT28_07480	COG4347	Protein of unknown function (DUF1405)
LIT28_07495	COG2738	Putative neutral zinc metallopeptidase
LIT28_07505	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
LIT28_07510	COG1694	Mazg nucleotide pyrophosphohydrolase
LIT28_07530	COG0438	transferase activity, transferring glycosyl groups
LIT28_07565	COG1199	ATP-dependent helicase activity
LIT28_07565	COG0847	DNA polymerase III is a complex, multichain enzyme responsible for most of the replicative synthesis in bacteria. The epsilon subunit contain the editing function and is a proofreading 3'-5' exonuclease
LIT28_07585	COG3935	DnaD domain protein
LIT28_07590	COG0177	DNA repair enzyme that has both DNA N-glycosylase activity and AP-lyase activity. The DNA N-glycosylase activity releases various damaged pyrimidines from DNA by cleaving the N- glycosidic bond, leaving an AP (apurinic apyrimidinic) site. The AP-lyase activity cleaves the phosphodiester bond 3' to the AP site by a beta-elimination, leaving a 3'-terminal unsaturated sugar and a product with a terminal 5'-phosphate
LIT28_07600	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LIT28_07600	COG4499	WXG100 protein secretion system (Wss), protein YukC
LIT28_07650	COG3599	regulation of cell shape
LIT28_07660	COG0116	Belongs to the methyltransferase superfamily
LIT28_07670	COG1199	ATP-dependent helicase activity
LIT28_07675	COG2317	Broad specificity carboxypetidase that releases amino acids sequentially from the C-terminus, including neutral, aromatic, polar and basic residues
LIT28_07685	COG0024	Methionine aminopeptidase
LIT28_07695	COG2233	PERMEase
LIT28_07705	COG2311	Membrane
LIT28_07710	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
LIT28_07720	COG0456	acetyltransferase
LIT28_07755	COG0754	glutathionylspermidine amidase activity
LIT28_07770	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LIT28_07795	COG2148	undecaprenyl-phosphate glucose phosphotransferase activity
LIT28_07810	COG1215	transferase activity, transferring glycosyl groups
LIT28_07815	COG0438	transferase activity, transferring glycosyl groups
LIT28_07830	COG0454	-acetyltransferase
LIT28_07850	COG0328	RNA-DNA hybrid ribonuclease activity
LIT28_07885	COG3403	YqcI/YcgG family
LIT28_07890	COG1280	lysine exporter protein (LysE YggA)
LIT28_07905	COG3162	membrane
LIT28_07910	COG4147	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LIT28_07915	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
LIT28_07925	COG0475	glutathione-regulated potassium exporter activity
LIT28_07930	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
LIT28_07935	COG4978	Transcriptional regulator
LIT28_07935	COG0789	Transcriptional regulator
LIT28_07945	COG2323	membrane
LIT28_07950	COG1434	Gram-negative-bacterium-type cell wall biogenesis
LIT28_08000	COG1923	regulation of RNA biosynthetic process
LIT28_08010	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
LIT28_08015	COG1360	Flagellar Motor Protein
LIT28_08020	COG2201	protein-glutamate methylesterase activity
LIT28_08025	COG0643	Histidine kinase
LIT28_08025	COG2198	Histidine kinase
LIT28_08030	COG1776	CheC inhibitor of MCP methylation
LIT28_08030	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
LIT28_08045	COG1352	Methylation of the membrane-bound methyl-accepting chemotaxis proteins (MCP) to form gamma-glutamyl methyl ester residues in MCP
LIT28_08065	COG1256	bacterial-type flagellum assembly
LIT28_08070	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
LIT28_08090	COG1815	bacterial-type flagellum-dependent cell motility
LIT28_08095	COG1558	bacterial-type flagellum-dependent cell motility
LIT28_08105	COG1766	The M ring may be actively involved in energy transduction
LIT28_08110	COG1536	FliG is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
LIT28_08120	COG1157	protein secretion by the type III secretion system
LIT28_08155	COG0835	chemotaxis
LIT28_08155	COG0784	Response regulator, receiver
LIT28_08165	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
LIT28_08170	COG1344	Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella
LIT28_08175	COG0741	lytic transglycosylase activity
LIT28_08185	COG1868	FliM is one of three proteins (FliG, FliN, FliM) that forms the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
LIT28_08190	COG1776	CheC inhibitor of MCP methylation
LIT28_08190	COG1886	FliN is one of three proteins (FliG, FliN, FliM) that form the rotor-mounted switch complex (C ring), located at the base of the basal body. This complex interacts with the CheY and CheZ chemotaxis proteins, in addition to contacting components of the motor that determine the direction of flagellar rotation
LIT28_08200	COG1338	Plays a role in the flagellum-specific transport system
LIT28_08205	COG1987	bacterial-type flagellum assembly
LIT28_08215	COG1377	Required for formation of the rod structure in the basal body of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
LIT28_08220	COG1298	Required for formation of the rod structure of the flagellar apparatus. Together with FliI and FliH, may constitute the export apparatus of flagellin
LIT28_08225	COG1419	protein localization to endoplasmic reticulum
LIT28_08230	COG4786	Flagellar basal body rod
LIT28_08235	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
LIT28_08280	COG2329	Antibiotic biosynthesis monooxygenase
LIT28_08305	COG0583	DNA-binding transcription factor activity
LIT28_08310	COG3842	ATPase activity
LIT28_08315	COG0725	ABC transporter, periplasmic molybdate-binding protein
LIT28_08325	COG1234	tRNA 3'-trailer cleavage
LIT28_08365	COG0406	alpha-ribazole phosphatase activity
LIT28_08385	COG1846	Transcriptional regulator
LIT28_08395	COG0367	asparagine synthase
LIT28_08425	COG1802	Transcriptional regulator
LIT28_08430	COG0697	spore germination
LIT28_08440	COG0523	cobalamin synthesis protein
LIT28_08445	COG0701	Predicted permease
LIT28_08455	COG1216	Glycosyl transferase, family 2
LIT28_08455	COG0438	transferase activity, transferring glycosyl groups
LIT28_08460	COG1757	Na H antiporter
LIT28_08465	COG0789	Transcriptional regulator
LIT28_08470	COG4221	oxidoreductase activity
LIT28_08485	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LIT28_08495	COG0534	Mate efflux family protein
LIT28_08500	COG3340	Belongs to the peptidase S51 family
LIT28_08520	COG0785	Cytochrome C biogenesis protein
LIT28_08545	COG2733	membrane
LIT28_08580	COG1131	(ABC) transporter
LIT28_08595	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LIT28_08600	COG0528	UMP kinase activity
LIT28_08610	COG1027	Aspartate ammonia-lyase
LIT28_08615	COG0281	malic enzyme
LIT28_08620	COG4191	Histidine kinase
LIT28_08625	COG0784	Response regulator, receiver
LIT28_08630	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
LIT28_08640	COG2502	aspartate--ammonia ligase
LIT28_08675	COG1051	belongs to the nudix hydrolase family
LIT28_08680	COG0860	N-Acetylmuramoyl-L-alanine amidase
LIT28_08690	COG2814	Major facilitator Superfamily
LIT28_08715	COG1695	Transcriptional regulator
LIT28_08725	COG0477	Major facilitator Superfamily
LIT28_08730	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LIT28_08740	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
LIT28_08745	COG4166	transmembrane transport
LIT28_08750	COG2223	nitrite transmembrane transporter activity
LIT28_08755	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
LIT28_08775	COG0733	neurotransmitter:sodium symporter activity
LIT28_08785	COG5566	PFAM Mor transcription activator
LIT28_08790	COG2323	membrane
LIT28_08810	COG0225	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LIT28_08820	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
LIT28_08825	COG0028	Belongs to the TPP enzyme family
LIT28_08845	COG1171	Catalyzes the anaerobic formation of alpha-ketobutyrate and ammonia from threonine in a two-step reaction. The first step involved a dehydration of threonine and a production of enamine intermediates (aminocrotonate), which tautomerizes to its imine form (iminobutyrate). Both intermediates are unstable and short- lived. The second step is the nonenzymatic hydrolysis of the enamine imine intermediates to form 2-ketobutyrate and free ammonia. In the low water environment of the cell, the second step is accelerated by RidA
LIT28_08870	COG2814	Major facilitator Superfamily
LIT28_08875	COG3384	dioxygenase
LIT28_08885	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
LIT28_08890	COG3279	Response regulator of the LytR AlgR family
LIT28_08895	COG0427	acetyl-CoA hydrolase
LIT28_08915	COG1073	alpha beta
LIT28_08920	COG4166	transmembrane transport
LIT28_08945	COG0535	radical SAM domain protein
LIT28_08950	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LIT28_08970	COG1914	H( )-stimulated, divalent metal cation uptake system
LIT28_08985	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
LIT28_08990	COG0531	amino acid
LIT28_09035	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
LIT28_09040	COG2390	Transcriptional regulator
LIT28_09050	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
LIT28_09055	COG0213	The enzymes which catalyze the reversible phosphorolysis of pyrimidine nucleosides are involved in the degradation of these compounds and in their utilization as carbon and energy sources, or in the rescue of pyrimidine bases for nucleotide synthesis
LIT28_09065	COG4846	Membrane protein involved in cytochrome C biogenesis
LIT28_09090	COG0006	proline dipeptidase activity
LIT28_09140	COG1131	(ABC) transporter
LIT28_09145	COG0561	phosphatase activity
LIT28_09160	COG0019	diaminopimelate decarboxylase activity
LIT28_09165	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LIT28_09225	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
LIT28_09250	COG0300	oxidoreductase activity
LIT28_09280	COG4973	Belongs to the 'phage' integrase family. XerC subfamily
LIT28_09345	COG1114	Component of the transport system for branched-chain amino acids
LIT28_09355	COG2372	response to copper ion
LIT28_09355	COG1276	copper resistance
LIT28_09360	COG4549	nuclear export factor GLE1
LIT28_09370	COG0697	spore germination
LIT28_09375	COG0583	DNA-binding transcription factor activity
LIT28_09380	COG1959	2 iron, 2 sulfur cluster binding
LIT28_09385	COG2761	dithiol-disulfide isomerase involved in polyketide biosynthesis
LIT28_09390	COG0778	Nitroreductase
LIT28_09400	COG0628	permease
LIT28_09410	COG1231	oxidoreductase activity
LIT28_09415	COG0523	cobalamin synthesis protein
LIT28_09430	COG0318	PFAM AMP-dependent synthetase and ligase
LIT28_09435	COG2030	dehydratase
LIT28_09440	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LIT28_09455	COG0411	ABC transporter
LIT28_09475	COG0583	DNA-binding transcription factor activity
LIT28_09485	COG1942	4-Oxalocrotonate Tautomerase
LIT28_09505	COG1271	oxidase subunit
LIT28_09510	COG1294	oxidase, subunit
LIT28_09515	COG4988	ABC transporter
LIT28_09520	COG4987	ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease ATP-binding protein CydC
LIT28_09530	COG1216	Glycosyl transferase, family 2
LIT28_09560	COG1686	Belongs to the peptidase S11 family
LIT28_09575	COG0791	NLP P60 protein
LIT28_09575	COG1388	LysM domain
LIT28_09585	COG1132	(ABC) transporter
LIT28_09590	COG0745	RESPONSE REGULATOR receiver
LIT28_09595	COG5002	protein histidine kinase activity
LIT28_09605	COG0300	oxidoreductase activity
LIT28_09610	COG4122	O-methyltransferase activity
LIT28_09635	COG0460	homoserine dehydrogenase
LIT28_09660	COG1316	TRANSCRIPTIONal
LIT28_09670	COG0745	RESPONSE REGULATOR receiver
LIT28_09675	COG5002	protein histidine kinase activity
LIT28_09690	COG1285	pathogenesis
LIT28_09695	COG1247	-acetyltransferase
LIT28_09715	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LIT28_09725	COG1082	Xylose isomerase domain protein TIM barrel
LIT28_09735	COG2814	Major facilitator Superfamily
LIT28_09740	COG1279	arginine transmembrane transporter activity
LIT28_09745	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LIT28_09755	COG1752	Esterase of the alpha-beta hydrolase superfamily
LIT28_09790	COG0577	efflux transmembrane transporter activity
LIT28_09795	COG2002	toxin-antitoxin pair type II binding
LIT28_09800	COG1404	Belongs to the peptidase S8 family
LIT28_09805	COG0640	Transcriptional regulator
LIT28_09810	COG0667	Aldo Keto reductase
LIT28_09820	COG3152	Membrane
LIT28_09845	COG0840	transmembrane signaling receptor activity
LIT28_09860	COG3949	Membrane
LIT28_09865	COG0783	Belongs to the Dps family
LIT28_09880	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
LIT28_09890	COG1231	oxidoreductase activity
LIT28_09895	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LIT28_09900	COG4989	oxidoreductase activity
LIT28_09905	COG0523	cobalamin synthesis protein
LIT28_09910	COG0456	acetyltransferase
LIT28_09935	COG4585	Histidine kinase
LIT28_09940	COG2197	response regulator
LIT28_09945	COG1404	Belongs to the peptidase S8 family
LIT28_09985	COG0803	Belongs to the bacterial solute-binding protein 9 family
LIT28_09995	COG0702	epimerase
LIT28_10005	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
LIT28_10015	COG4166	transmembrane transport
LIT28_10030	COG0406	alpha-ribazole phosphatase activity
LIT28_10040	COG5337	Spore coat protein CotH
LIT28_10045	COG1051	belongs to the nudix hydrolase family
LIT28_10050	COG0586	Pfam SNARE associated Golgi protein
LIT28_10055	COG2244	polysaccharide biosynthetic process
LIT28_10065	COG0701	Predicted permease
LIT28_10070	COG3689	TIGRFAM TIGR03943 family protein
LIT28_10075	COG1607	acyl-coa hydrolase
LIT28_10085	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LIT28_10100	COG0702	epimerase
LIT28_10105	COG2839	Protein conserved in bacteria
LIT28_10110	COG1253	flavin adenine dinucleotide binding
LIT28_10125	COG1114	Component of the transport system for branched-chain amino acids
LIT28_10130	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LIT28_10150	COG0860	N-Acetylmuramoyl-L-alanine amidase
LIT28_10160	COG1876	peptidase activity
LIT28_10165	COG0494	nUDIX hydrolase
LIT28_10175	COG2211	Major facilitator Superfamily
LIT28_10195	COG0561	phosphatase activity
LIT28_10200	COG1846	Transcriptional regulator
LIT28_10215	COG0787	Catalyzes the interconversion of L-alanine and D- alanine. May also act on other amino acids
LIT28_10220	COG4106	trans-aconitate 2-methyltransferase activity
LIT28_10235	COG1819	glycosyl
LIT28_10240	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
LIT28_10245	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LIT28_10270	COG0456	acetyltransferase
LIT28_10320	COG3874	Sporulation protein YtfJ
LIT28_10345	COG2227	3-demethylubiquinone-9 3-O-methyltransferase activity
LIT28_10365	COG1082	Xylose isomerase domain protein TIM barrel
LIT28_10370	COG0346	lactoylglutathione lyase activity
LIT28_10380	COG0604	alcohol dehydrogenase
LIT28_10385	COG1595	DNA-templated transcription, initiation
LIT28_10405	COG0426	domain, Protein
LIT28_10405	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
LIT28_10415	COG0386	Belongs to the glutathione peroxidase family
LIT28_10420	COG1305	Transglutaminase-like
LIT28_10425	COG1721	protein (some members contain a von Willebrand factor type A (vWA) domain
LIT28_10430	COG0714	Associated with various cellular activities
LIT28_10445	COG5013	Belongs to the prokaryotic molybdopterin-containing oxidoreductase family
LIT28_10450	COG1140	nitrate reductase beta subunit
LIT28_10455	COG2180	nitrate reductase molybdenum cofactor assembly chaperone
LIT28_10460	COG2181	nitrate reductase activity
LIT28_10465	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LIT28_10470	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
LIT28_10475	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
LIT28_10480	COG0303	'Molybdopterin
LIT28_10485	COG0314	molybdopterin synthase activity
LIT28_10495	COG2223	nitrite transmembrane transporter activity
LIT28_10520	COG1648	precorrin-2 dehydrogenase activity
LIT28_10530	COG0007	Multifunctional enzyme that catalyzes the SAM-dependent methylations of uroporphyrinogen III at position C-2 and C-7 to form precorrin-2 via precorrin-1. Then it catalyzes the NAD- dependent ring dehydrogenation of precorrin-2 to yield sirohydrochlorin. Finally, it catalyzes the ferrochelation of sirohydrochlorin to yield siroheme
LIT28_10530	COG1587	Uroporphyrinogen-III synthase
LIT28_10535	COG2146	nitrite reductase [NAD(P)H] activity
LIT28_10540	COG1251	Belongs to the nitrite and sulfite reductase 4Fe-4S domain family
LIT28_10545	COG2846	Di-iron-containing protein involved in the repair of iron-sulfur clusters
LIT28_10580	COG2359	stage V sporulation protein S
LIT28_10600	COG1418	mRNA catabolic process
LIT28_10605	COG0488	(ABC) transporter
LIT28_10625	COG1413	lyase activity
LIT28_10640	COG2521	methyltransferase
LIT28_10640	COG2136	Putative SAM-dependent methyltransferase
LIT28_10645	COG0018	arginyl-trna synthetase
LIT28_10680	COG1309	transcriptional regulator
LIT28_10695	COG0770	UDP-N-acetylmuramoyl-tripeptide-D-alanyl-D-alanine ligase activity
LIT28_10700	COG0017	Asparaginyl-tRNA synthetase
LIT28_10720	COG1674	ftsk spoiiie
LIT28_10790	COG1929	Belongs to the glycerate kinase type-1 family
LIT28_10795	COG0471	metal ion transport
LIT28_10800	COG0745	RESPONSE REGULATOR receiver
LIT28_10805	COG5002	protein histidine kinase activity
LIT28_10805	COG3850	Histidine kinase
LIT28_10820	COG0733	neurotransmitter:sodium symporter activity
LIT28_10845	COG2610	gluconate transmembrane transporter activity
LIT28_10850	COG1454	alcohol dehydrogenase
LIT28_10855	COG1794	racemase activity, acting on amino acids and derivatives
LIT28_10865	COG0456	acetyltransferase
LIT28_10870	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
LIT28_10880	COG1131	(ABC) transporter
LIT28_10885	COG4473	ABC transporter
LIT28_10895	COG0546	phosphoglycolate phosphatase activity
LIT28_10915	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
LIT28_10930	COG0768	penicillin binding
LIT28_10940	COG0204	Acyl-transferase
LIT28_10945	COG1272	protein, Hemolysin III
LIT28_10955	COG0805	protein transport
LIT28_10965	COG1307	EDD domain protein, DegV family
LIT28_10970	COG2220	Zn-dependent hydrolases of the beta-lactamase fold
LIT28_10975	COG1999	signal sequence binding
LIT28_10980	COG0071	Belongs to the small heat shock protein (HSP20) family
LIT28_10985	COG0367	asparagine synthase
LIT28_11005	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
LIT28_11010	COG0115	Belongs to the class-IV pyridoxal-phosphate-dependent aminotransferase family
LIT28_11030	COG1335	isochorismatase
LIT28_11035	COG1051	belongs to the nudix hydrolase family
LIT28_11040	COG0668	transmembrane transport
LIT28_11045	COG4585	Histidine kinase
LIT28_11045	COG2203	Gaf domain
LIT28_11050	COG2197	response regulator
LIT28_11055	COG1737	Transcriptional regulator
LIT28_11060	COG1064	alcohol dehydrogenase
LIT28_11090	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
LIT28_11125	COG0517	IMP dehydrogenase activity
LIT28_11125	COG1125	glycine betaine transport
LIT28_11130	COG1174	glycine betaine transport
LIT28_11165	COG1253	flavin adenine dinucleotide binding
LIT28_11170	COG1012	belongs to the aldehyde dehydrogenase family
LIT28_11175	COG5506	Protein of unknown function (DUF1694)
LIT28_11190	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
LIT28_11195	COG1788	Acyl CoA acetate 3-ketoacid CoA transferase, alpha subunit
LIT28_11200	COG2057	Acyl CoA acetate 3-ketoacid CoA transferase beta subunit
LIT28_11205	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LIT28_11210	COG0456	acetyltransferase
LIT28_11215	COG3829	transcription factor binding
LIT28_11220	COG1509	lysine 2,3-aminomutase activity
LIT28_11255	COG4991	sh3 domain protein
LIT28_11255	COG0515	serine threonine protein kinase
LIT28_11255	COG3064	Membrane
LIT28_11260	COG4326	sporulation control protein
LIT28_11265	COG0671	phosphoesterase, PA-phosphatase related
LIT28_11270	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
LIT28_11280	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LIT28_11285	COG0582	viral genome integration into host DNA
LIT28_11295	COG1396	sequence-specific DNA binding
LIT28_11340	COG5377	YqaJ viral recombinase family
LIT28_11345	COG3723	Recombinational DNA repair protein, rece pathway
LIT28_11365	COG5582	Belongs to the UPF0302 family
LIT28_11440	COG3728	DNA packaging
LIT28_11440	COG5484	DNA packaging
LIT28_11445	COG1783	phage Terminase large subunit
LIT28_11595	COG5444	nuclease activity
LIT28_11615	COG1787	Restriction endonuclease
LIT28_11615	COG1715	Restriction endonuclease
LIT28_11700	COG1595	DNA-templated transcription, initiation
LIT28_11730	COG0760	Chaperone involved in the correct folding and assembly of outer membrane proteins. Recognizes specific patterns of aromatic residues and the orientation of their side chains, which are found more frequently in integral outer membrane proteins. May act in both early periplasmic and late outer membrane-associated steps of protein maturation
LIT28_11760	COG0300	oxidoreductase activity
LIT28_11780	COG4499	WXG100 protein secretion system (Wss), protein YukC
LIT28_11780	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LIT28_11790	COG2814	Major facilitator Superfamily
LIT28_11795	COG4841	protein insertion into membrane
LIT28_11800	COG0372	Belongs to the citrate synthase family
LIT28_11805	COG2079	MmgE PrpD family protein
LIT28_11810	COG2513	Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate
LIT28_11815	COG1960	acyl-CoA dehydrogenase activity
LIT28_11820	COG2084	Dehydrogenase
LIT28_11830	COG1280	lysine exporter protein (LysE YggA)
LIT28_11835	COG1024	Enoyl-CoA hydratase
LIT28_11850	COG0420	3'-5' exonuclease activity
LIT28_11855	COG0419	ATPase involved in DNA repair
LIT28_11865	COG2801	Transposase and inactivated derivatives
LIT28_11890	COG2223	nitrite transmembrane transporter activity
LIT28_11895	COG1028	Short-chain dehydrogenase reductase Sdr
LIT28_11900	COG1169	isochorismate synthase
LIT28_11905	COG1021	2,3-dihydroxybenzoate-AMP ligase
LIT28_11910	COG1535	isochorismatase
LIT28_11910	COG3433	isochorismatase activity
LIT28_11915	COG1020	D-alanine [D-alanyl carrier protein] ligase activity
LIT28_11920	COG3251	PFAM MbtH domain protein
LIT28_11925	COG2814	Major facilitator Superfamily
LIT28_11940	COG0776	regulation of translation
LIT28_11950	COG2318	DinB family
LIT28_11960	COG1115	amino acid carrier protein
LIT28_11980	COG2329	Antibiotic biosynthesis monooxygenase
LIT28_11985	COG1187	pseudouridine synthase activity
LIT28_11990	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
LIT28_12000	COG1136	(ABC) transporter
LIT28_12010	COG0596	Alpha beta hydrolase
LIT28_12015	COG2814	Major facilitator Superfamily
LIT28_12050	COG2226	methyltransferase
LIT28_12090	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LIT28_12130	COG1247	-acetyltransferase
LIT28_12155	COG3208	Thioesterase involved in non-ribosomal peptide biosynthesis
LIT28_12160	COG1232	Catalyzes the 6-electron oxidation of protoporphyrinogen-IX to form protoporphyrin-IX
LIT28_12170	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LIT28_12200	COG0561	phosphatase activity
LIT28_12210	COG1846	Transcriptional regulator
LIT28_12215	COG2814	Major facilitator Superfamily
LIT28_12255	COG0583	DNA-binding transcription factor activity
LIT28_12260	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
LIT28_12275	COG0583	DNA-binding transcription factor activity
LIT28_12280	COG2258	MOSC domain
LIT28_12295	COG1132	(ABC) transporter
LIT28_12300	COG1132	(ABC) transporter
LIT28_12335	COG1396	sequence-specific DNA binding
LIT28_12365	COG1309	transcriptional regulator
LIT28_12370	COG2814	Major facilitator Superfamily
LIT28_12375	COG4221	oxidoreductase activity
LIT28_12400	COG1595	DNA-templated transcription, initiation
LIT28_12425	COG1649	PFAM Uncharacterised BCR, COG1649
LIT28_12445	COG2377	Catalyzes the specific phosphorylation of 1,6-anhydro-N- acetylmuramic acid (anhMurNAc) with the simultaneous cleavage of the 1,6-anhydro ring, generating MurNAc-6-P. Is required for the utilization of anhMurNAc either imported from the medium or derived from its own cell wall murein, and thus plays a role in cell wall recycling
LIT28_12450	COG2971	BadF BadG BcrA BcrD
LIT28_12480	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LIT28_12535	COG0500	methyltransferase
LIT28_12535	COG3615	Tellurite resistance protein tehB
LIT28_12545	COG3961	Belongs to the TPP enzyme family
LIT28_12550	COG1846	Transcriptional regulator
LIT28_12590	COG2195	Cleaves the N-terminal amino acid of tripeptides
LIT28_12600	COG0110	maltose O-acetyltransferase activity
LIT28_12605	COG1686	Belongs to the peptidase S11 family
LIT28_12620	COG0768	penicillin binding
LIT28_12625	COG1595	DNA-templated transcription, initiation
LIT28_12635	COG0768	penicillin binding
LIT28_12640	COG0768	penicillin binding
LIT28_12645	COG2367	Beta-lactamase
LIT28_12660	COG1131	(ABC) transporter
LIT28_12670	COG1309	transcriptional regulator
LIT28_12685	COG1960	acyl-CoA dehydrogenase activity
LIT28_12690	COG0439	Biotin carboxylase
LIT28_12695	COG0511	ligase activity, forming carbon-carbon bonds
LIT28_12700	COG0119	Catalyzes the condensation of the acetyl group of acetyl-CoA with 3-methyl-2-oxobutanoate (2-oxoisovalerate) to form 3-carboxy-3-hydroxy-4-methylpentanoate (2-isopropylmalate)
LIT28_12705	COG1024	Enoyl-CoA hydratase
LIT28_12710	COG4799	Acetyl-CoA carboxylase, carboxyltransferase component subunits alpha and beta
LIT28_12715	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LIT28_12730	COG1247	-acetyltransferase
LIT28_12735	COG0572	uridine kinase
LIT28_12745	COG2318	DinB family
LIT28_12750	COG1686	Belongs to the peptidase S11 family
LIT28_12775	COG0775	Catalyzes the irreversible cleavage of the glycosidic bond in both 5'-methylthioadenosine (MTA) and S- adenosylhomocysteine (SAH AdoHcy) to adenine and the corresponding thioribose, 5'-methylthioribose and S-ribosylhomocysteine, respectively
LIT28_12795	COG3227	Zinc metalloprotease (Elastase)
LIT28_12815	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
LIT28_12840	COG2814	Major facilitator Superfamily
LIT28_12845	COG0241	D,D-heptose 1,7-bisphosphate phosphatase
LIT28_12860	COG2226	methyltransferase
LIT28_12870	COG1942	4-Oxalocrotonate Tautomerase
LIT28_12875	COG0583	DNA-binding transcription factor activity
LIT28_12900	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LIT28_12940	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
LIT28_12945	COG0693	protein deglycase activity
LIT28_12960	COG3773	Cell wall hydrolase
LIT28_12970	COG0745	RESPONSE REGULATOR receiver
LIT28_12975	COG2205	protein histidine kinase activity
LIT28_12990	COG0667	Aldo Keto reductase
LIT28_12995	COG0488	(ABC) transporter
LIT28_13010	COG1136	(ABC) transporter
LIT28_13015	COG0577	efflux transmembrane transporter activity
LIT28_13035	COG0460	homoserine dehydrogenase
LIT28_13040	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LIT28_13050	COG0819	Catalyzes an amino-pyrimidine hydrolysis reaction at the C5' of the pyrimidine moiety of thiamine compounds, a reaction that is part of a thiamine salvage pathway
LIT28_13120	COG0582	viral genome integration into host DNA
LIT28_13160	COG1484	DNA-dependent DNA replication
LIT28_13215	COG0582	viral genome integration into host DNA
LIT28_13220	COG0662	Cupin 2, conserved barrel domain protein
LIT28_13420	COG2124	cytochrome p450
LIT28_13455	COG0561	phosphatase activity
LIT28_13460	COG5002	protein histidine kinase activity
LIT28_13465	COG0768	penicillin binding
LIT28_13470	COG1819	glycosyl
LIT28_13475	COG1794	racemase activity, acting on amino acids and derivatives
LIT28_13500	COG2205	protein histidine kinase activity
LIT28_13510	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
LIT28_13515	COG0604	alcohol dehydrogenase
LIT28_13520	COG0671	phosphoesterase, PA-phosphatase related
LIT28_13525	COG0768	penicillin binding
LIT28_13535	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
LIT28_13575	COG3647	Membrane
LIT28_13580	COG0671	phosphoesterase, PA-phosphatase related
LIT28_13590	COG2323	membrane
LIT28_13615	COG2814	Major facilitator Superfamily
LIT28_13635	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LIT28_13640	COG0697	spore germination
LIT28_13660	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
LIT28_13670	COG2223	nitrite transmembrane transporter activity
LIT28_13685	COG2816	NAD+ diphosphatase activity
LIT28_13690	COG0592	DNA-directed DNA polymerase activity
LIT28_13725	COG3878	Protein conserved in bacteria
LIT28_13745	COG4667	esterase of the alpha-beta hydrolase superfamily
LIT28_13785	COG0322	excinuclease ABC activity
LIT28_13825	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LIT28_13850	COG1011	Hydrolase
LIT28_13855	COG0745	RESPONSE REGULATOR receiver
LIT28_13860	COG5002	protein histidine kinase activity
LIT28_13870	COG2801	Transposase and inactivated derivatives
LIT28_13885	COG1136	(ABC) transporter
LIT28_13890	COG0577	efflux transmembrane transporter activity
LIT28_13900	COG0657	acetylesterase activity
LIT28_13905	COG0076	glutamate decarboxylase activity
LIT28_13920	COG1523	belongs to the glycosyl hydrolase 13 family
LIT28_13925	COG3227	Zinc metalloprotease (Elastase)
LIT28_13930	COG0737	Belongs to the 5'-nucleotidase family
LIT28_13940	COG0201	protein transport
LIT28_13950	COG0697	spore germination
LIT28_13955	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LIT28_13995	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LIT28_14010	COG2959	enzyme of heme biosynthesis
LIT28_14045	COG1309	transcriptional regulator
LIT28_14075	COG3284	Transcriptional regulator
LIT28_14085	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LIT28_14090	COG1349	DNA-binding transcription factor activity
LIT28_14110	COG1959	2 iron, 2 sulfur cluster binding
LIT28_14125	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LIT28_14130	COG0508	dehydrogenase complex catalyzes the overall conversion of
LIT28_14135	COG0022	dehydrogenase e1 component
LIT28_14140	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
LIT28_14150	COG1028	Short-chain dehydrogenase reductase Sdr
LIT28_14155	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
LIT28_14155	COG0456	acetyltransferase
LIT28_14190	COG4176	ABC-type proline glycine betaine transport system permease component
LIT28_14195	COG0517	IMP dehydrogenase activity
LIT28_14195	COG4175	Glycine betaine
LIT28_14225	COG2153	protein acetylation
LIT28_14230	COG3397	chitin binding
LIT28_14245	COG2205	protein histidine kinase activity
LIT28_14250	COG2226	methyltransferase
LIT28_14265	COG0658	competence protein
LIT28_14265	COG2333	competence protein COMEC
LIT28_14320	COG3973	AAA domain
LIT28_14335	COG0514	ATP-dependent DNA helicase (RecQ)
LIT28_14360	COG4637	Psort location Cytoplasmic, score
LIT28_14385	COG3397	chitin binding
LIT28_14400	COG0599	Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity
LIT28_14405	COG1115	amino acid carrier protein
LIT28_14410	COG1012	belongs to the aldehyde dehydrogenase family
LIT28_14415	COG0329	Catalyzes the condensation of (S)-aspartate-beta- semialdehyde (S)-ASA and pyruvate to 4-hydroxy- tetrahydrodipicolinate (HTPA)
LIT28_14420	COG3938	Belongs to the proline racemase family
LIT28_14425	COG3938	Belongs to the proline racemase family
LIT28_14430	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LIT28_14470	COG0586	Pfam SNARE associated Golgi protein
LIT28_14485	COG3966	Protein involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein)
LIT28_14505	COG4166	transmembrane transport
LIT28_14515	COG4948	Mandelate Racemase Muconate Lactonizing
LIT28_14555	COG2936	dipeptidyl-peptidase activity
LIT28_14560	COG5002	protein histidine kinase activity
LIT28_14565	COG0745	RESPONSE REGULATOR receiver
LIT28_14605	COG1164	Oligoendopeptidase f
LIT28_14615	COG1307	EDD domain protein, DegV family
LIT28_14655	COG2814	Major facilitator Superfamily
LIT28_14665	COG1664	Polymer-forming cytoskeletal
LIT28_14670	COG0789	Transcriptional regulator
LIT28_14675	COG4533	DNA binding
LIT28_14680	COG2814	Major facilitator Superfamily
LIT28_14680	COG0477	Major facilitator Superfamily
LIT28_14705	COG2261	transglycosylase associated protein
LIT28_14720	COG2226	methyltransferase
LIT28_14750	COG0436	Aminotransferase
LIT28_14755	COG0764	3-hydroxyoctanoyl-[acyl-carrier-protein] dehydratase activity
LIT28_14780	COG1131	(ABC) transporter
LIT28_14785	COG2188	Transcriptional regulator
LIT28_14830	COG0628	permease
LIT28_14845	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
LIT28_14850	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LIT28_14855	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LIT28_14895	COG2746	aminoglycoside 3-N-acetyltransferase activity
LIT28_14920	COG0697	spore germination
LIT28_14925	COG2318	DinB family
LIT28_14950	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
LIT28_14955	COG0346	lactoylglutathione lyase activity
LIT28_14970	COG0861	Integral membrane protein TerC family
LIT28_14975	COG1368	sulfuric ester hydrolase activity
LIT28_14980	COG0488	(ABC) transporter
LIT28_14990	COG1033	growth of symbiont in host cell
LIT28_14990	COG2409	Drug exporters of the RND superfamily
LIT28_14995	COG1309	transcriptional regulator
LIT28_15010	COG0287	Prephenate dehydrogenase
LIT28_15025	COG2876	3-deoxy-7-phosphoheptulonate synthase activity
LIT28_15025	COG1605	Chorismate mutase
LIT28_15040	COG1335	isochorismatase
LIT28_15055	COG3584	3D domain protein
LIT28_15055	COG1388	LysM domain
LIT28_15075	COG1879	ABC-type sugar transport system periplasmic component
LIT28_15085	COG1172	Belongs to the binding-protein-dependent transport system permease family
LIT28_15095	COG2390	Transcriptional regulator
LIT28_15100	COG1070	Carbohydrate kinase
LIT28_15135	COG2329	Antibiotic biosynthesis monooxygenase
LIT28_15155	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
LIT28_15170	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
LIT28_15175	COG4187	Peptidase family M20/M25/M40
LIT28_15180	COG1414	Transcriptional regulator
LIT28_15185	COG0833	amino acid
LIT28_15195	COG3239	Fatty acid desaturase
LIT28_15205	COG1785	Belongs to the alkaline phosphatase family
LIT28_15215	COG3655	Transcriptional regulator
LIT28_15230	COG4377	Putative membrane peptidase family (DUF2324)
LIT28_15240	COG3279	Response regulator of the LytR AlgR family
LIT28_15260	COG0346	lactoylglutathione lyase activity
LIT28_15280	COG0714	Associated with various cellular activities
LIT28_15305	COG0463	Glycosyl transferase, family 2
LIT28_15320	COG0463	Glycosyl transferase, family 2
LIT28_15335	COG0753	catalase activity
LIT28_15345	COG1001	Belongs to the metallo-dependent hydrolases superfamily. Adenine deaminase family
LIT28_15375	COG0778	Nitroreductase
LIT28_15380	COG1846	Transcriptional regulator
LIT28_15400	COG0179	Fumarylacetoacetate (FAA) hydrolase
LIT28_15410	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LIT28_15415	COG0824	Thioesterase
LIT28_15420	COG0318	PFAM AMP-dependent synthetase and ligase
LIT28_15425	COG0183	Belongs to the thiolase family
LIT28_15430	COG1024	Enoyl-CoA hydratase
LIT28_15435	COG1250	3-hydroxyacyl-CoA dehydrogenase
LIT28_15440	COG2723	6-phospho-beta-galactosidase activity
LIT28_15445	COG1447	Phosphotransferase system cellobiose-specific component IIA
LIT28_15450	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
LIT28_15460	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
LIT28_15470	COG2508	Transcriptional regulator
LIT28_15475	COG2814	Major facilitator Superfamily
LIT28_15480	COG1574	metal-dependent hydrolase with the TIM-barrel fold
LIT28_15495	COG3831	ATPase activity
LIT28_15495	COG4884	unkown
LIT28_15515	COG2207	Transcriptional regulator
LIT28_15520	COG0456	acetyltransferase
LIT28_15540	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LIT28_15580	COG0730	response to heat
LIT28_15590	COG0833	amino acid
LIT28_15600	COG4335	DNA alkylation repair
LIT28_15630	COG0768	penicillin binding
LIT28_15665	COG1984	allophanate hydrolase subunit 2
LIT28_15670	COG2049	5-oxoprolinase (ATP-hydrolyzing) activity
LIT28_15675	COG1414	Transcriptional regulator
LIT28_15695	COG3142	Participates in the control of copper homeostasis
LIT28_15700	COG0860	N-Acetylmuramoyl-L-alanine amidase
LIT28_15705	COG0640	Transcriptional regulator
LIT28_15715	COG1960	acyl-CoA dehydrogenase activity
LIT28_15730	COG3314	Sporulation integral membrane protein YlbJ
LIT28_15765	COG3848	Pyruvate phosphate dikinase
LIT28_15765	COG0574	Belongs to the PEP-utilizing enzyme family
LIT28_15775	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LIT28_15790	COG5577	PFAM Coat F domain
LIT28_15795	COG3403	YqcI/YcgG family
LIT28_15800	COG1280	lysine exporter protein (LysE YggA)
LIT28_15805	COG1113	amino acid transport
LIT28_15835	COG1063	alcohol dehydrogenase
LIT28_15850	COG1027	Aspartate ammonia-lyase
LIT28_15855	COG0252	asparaginase activity
LIT28_15860	COG1396	sequence-specific DNA binding
LIT28_15890	COG5002	protein histidine kinase activity
LIT28_15915	COG2207	Transcriptional regulator
LIT28_15925	COG0322	excinuclease ABC activity
LIT28_15930	COG0531	amino acid
LIT28_15935	COG1114	Component of the transport system for branched-chain amino acids
LIT28_15940	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
LIT28_15950	COG0281	malic enzyme
LIT28_15965	COG0531	amino acid
LIT28_15970	COG0697	spore germination
LIT28_15975	COG0784	Response regulator, receiver
LIT28_15980	COG4191	Histidine kinase
LIT28_15985	COG2066	Belongs to the glutaminase family
LIT28_15990	COG1115	amino acid carrier protein
LIT28_16020	COG0737	Belongs to the 5'-nucleotidase family
LIT28_16025	COG0753	catalase activity
LIT28_16030	COG2267	carboxylic ester hydrolase activity
LIT28_16035	COG1335	isochorismatase
LIT28_16055	COG0583	DNA-binding transcription factor activity
LIT28_16065	COG0598	Magnesium transport protein CorA
LIT28_16115	COG0415	Belongs to the DNA photolyase family
LIT28_16120	COG0288	reversible hydration of carbon dioxide
LIT28_16130	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
LIT28_16135	COG5609	conserved protein (DUF2294)
LIT28_16150	COG1575	Belongs to the MenA family. Type 1 subfamily
LIT28_16155	COG4641	Protein conserved in bacteria
LIT28_16190	COG0798	PFAM Bile acid sodium symporter
LIT28_16195	COG0346	lactoylglutathione lyase activity
LIT28_16200	COG0640	Transcriptional regulator
LIT28_16215	COG1476	TRANSCRIPTIONal
LIT28_16245	COG2814	Major facilitator Superfamily
LIT28_16250	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LIT28_16250	COG3320	Male sterility
LIT28_16255	COG1309	transcriptional regulator
LIT28_16265	COG1522	sequence-specific DNA binding
LIT28_16280	COG0346	lactoylglutathione lyase activity
LIT28_16320	COG2814	Major facilitator Superfamily
LIT28_16345	COG2169	Transcriptional regulator
LIT28_16375	COG0745	RESPONSE REGULATOR receiver
LIT28_16380	COG3850	Histidine kinase
LIT28_16380	COG5002	protein histidine kinase activity
LIT28_16405	COG2515	1-aminocyclopropane-1-carboxylate deaminase
LIT28_16420	COG3315	Exhibits S-adenosyl-L-methionine-dependent methyltransferase activity
LIT28_16435	COG1136	(ABC) transporter
LIT28_16440	COG0577	efflux transmembrane transporter activity
LIT28_16455	COG5002	protein histidine kinase activity
LIT28_16455	COG3850	Histidine kinase
LIT28_16465	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
LIT28_16485	COG1619	proteins homologs of microcin C7 resistance protein MccF
LIT28_16505	COG0584	glycerophosphoryl diester phosphodiesterase
LIT28_16545	COG0738	Major facilitator superfamily
LIT28_16550	COG0673	inositol 2-dehydrogenase activity
LIT28_16555	COG0561	phosphatase activity
LIT28_16560	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
LIT28_16565	COG1609	Transcriptional regulator
LIT28_16580	COG0823	Involved in the tonB-independent uptake of proteins
LIT28_16585	COG3397	chitin binding
LIT28_16595	COG0697	spore germination
LIT28_16650	COG0389	Poorly processive, error-prone DNA polymerase involved in untargeted mutagenesis. Copies undamaged DNA at stalled replication forks, which arise in vivo from mismatched or misaligned primer ends. These misaligned primers can be extended by PolIV. Exhibits no 3'-5' exonuclease (proofreading) activity. May be involved in translesional synthesis, in conjunction with the beta clamp from PolIII
LIT28_16675	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LIT28_16700	COG2814	Major facilitator Superfamily
LIT28_16705	COG1309	transcriptional regulator
LIT28_16720	COG0814	amino acid
LIT28_16725	COG1760	l-serine dehydratase
LIT28_16730	COG1760	l-serine dehydratase
LIT28_16740	COG0160	Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family
LIT28_16745	COG0068	Along with HypE, it catalyzes the synthesis of the CN ligands of the active site iron of NiFe -hydrogenases using carbamoylphosphate as a substrate. It functions as a carbamoyl transferase using carbamoylphosphate as a substrate and transferring the carboxamido moiety in an ATP-dependent reaction to the thiolate of the C-terminal cysteine of HypE yielding a protein-S-carboxamide
LIT28_16755	COG1335	isochorismatase
LIT28_16760	COG1522	sequence-specific DNA binding
LIT28_16765	COG0531	amino acid
LIT28_16780	COG0111	D-isomer specific 2-hydroxyacid dehydrogenase
LIT28_16800	COG0662	Cupin 2, conserved barrel domain protein
LIT28_16805	COG2207	Transcriptional regulator
LIT28_16805	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
LIT28_16830	COG3409	Peptidoglycan-binding domain 1 protein
LIT28_16830	COG5632	N-Acetylmuramoyl-L-alanine amidase
LIT28_16855	COG2814	Major facilitator Superfamily
LIT28_16895	COG0477	Major facilitator Superfamily
LIT28_16910	COG1846	Transcriptional regulator
LIT28_16915	COG2814	Major facilitator Superfamily
LIT28_16925	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
LIT28_16930	COG1131	(ABC) transporter
LIT28_16955	COG1309	transcriptional regulator
LIT28_16975	COG2031	fatty acid transporter
LIT28_16985	COG2249	NAD(P)H dehydrogenase (quinone) activity
LIT28_17020	COG0619	Transmembrane (T) component of an energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates
LIT28_17040	COG1288	antiporter activity
LIT28_17045	COG2356	endonuclease I
LIT28_17050	COG2606	Belongs to the prolyl-tRNA editing family. YbaK EbsC subfamily
LIT28_17080	COG1733	regulation of RNA biosynthetic process
LIT28_17085	COG0778	Nitroreductase
LIT28_17105	COG1028	Short-chain dehydrogenase reductase Sdr
LIT28_17115	COG1131	(ABC) transporter
LIT28_17140	COG1011	Hydrolase
LIT28_17150	COG2365	Tyrosine phosphatase family
LIT28_17175	COG0346	lactoylglutathione lyase activity
LIT28_17180	COG1940	carbohydrate kinase activity
LIT28_17185	COG0738	Major facilitator superfamily
LIT28_17190	COG0110	maltose O-acetyltransferase activity
LIT28_17205	COG0628	permease
LIT28_17225	COG0500	methyltransferase
LIT28_17235	COG0477	Major facilitator Superfamily
LIT28_17265	COG1253	flavin adenine dinucleotide binding
LIT28_17270	COG0789	Transcriptional regulator
LIT28_17280	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
LIT28_17305	COG0697	spore germination
LIT28_17310	COG1357	PFAM Pentapeptide repeats (8 copies)
LIT28_17315	COG3813	Protein conserved in bacteria
LIT28_17320	COG2706	6-phosphogluconolactonase activity
LIT28_17325	COG1070	Carbohydrate kinase
LIT28_17335	COG0176	Transaldolase is important for the balance of metabolites in the pentose-phosphate pathway
LIT28_17340	COG1023	phosphogluconate dehydrogenase (decarboxylating) activity
LIT28_17350	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
LIT28_17355	COG0364	Catalyzes the oxidation of glucose 6-phosphate to 6- phosphogluconolactone
LIT28_17365	COG2141	COG2141 Coenzyme F420-dependent N5,N10-methylene tetrahydromethanopterin reductase and related flavin-dependent oxidoreductases
LIT28_17370	COG0789	Transcriptional regulator
LIT28_17385	COG1028	Short-chain dehydrogenase reductase Sdr
LIT28_17405	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LIT28_17405	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LIT28_17410	COG0108	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
LIT28_17410	COG0807	Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate
LIT28_17415	COG1733	regulation of RNA biosynthetic process
LIT28_17430	COG0656	L-ascorbic acid biosynthetic process
LIT28_17435	COG2814	Major facilitator Superfamily
LIT28_17450	COG0346	lactoylglutathione lyase activity
LIT28_17455	COG0814	amino acid
LIT28_17480	COG1393	Belongs to the ArsC family
LIT28_17485	COG1733	regulation of RNA biosynthetic process
LIT28_17490	COG2188	Transcriptional regulator
LIT28_17495	COG0673	inositol 2-dehydrogenase activity
LIT28_17500	COG2230	cyclopropane-fatty-acyl-phospholipid synthase
LIT28_17505	COG1733	regulation of RNA biosynthetic process
LIT28_17510	COG1733	regulation of RNA biosynthetic process
LIT28_17525	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LIT28_17545	COG0384	phenazine biosynthesis protein PhzF
LIT28_17565	COG0318	PFAM AMP-dependent synthetase and ligase
LIT28_17570	COG2249	NAD(P)H dehydrogenase (quinone) activity
LIT28_17575	COG1733	regulation of RNA biosynthetic process
LIT28_17580	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LIT28_17605	COG1191	sigma factor activity
LIT28_17620	COG1309	transcriptional regulator
LIT28_17625	COG1280	lysine exporter protein (LysE YggA)
LIT28_17645	COG3152	Membrane
LIT28_17675	COG1151	hydroxylamine reductase activity
LIT28_17700	COG2072	flavoprotein involved in K transport
LIT28_17730	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LIT28_17745	COG1695	Transcriptional regulator
LIT28_17755	COG1113	amino acid transport
LIT28_17760	COG2814	Major facilitator Superfamily
LIT28_17790	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
LIT28_17795	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
LIT28_17810	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
LIT28_17815	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LIT28_17820	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LIT28_17825	COG3739	integral membrane protein
LIT28_17865	COG0583	DNA-binding transcription factor activity
LIT28_17890	COG1193	negative regulation of DNA recombination
LIT28_17910	COG2162	N-hydroxyarylamine O-acetyltransferase activity
LIT28_17915	COG1164	Oligoendopeptidase f
LIT28_17920	COG1680	COG1680 Beta-lactamase class C and other penicillin binding
LIT28_17945	COG0584	glycerophosphoryl diester phosphodiesterase
LIT28_17985	COG0640	Transcriptional regulator
LIT28_17990	COG0604	alcohol dehydrogenase
LIT28_18000	COG0457	Tetratricopeptide repeat
LIT28_18010	COG2808	Putative FMN-binding domain
LIT28_18015	COG0456	acetyltransferase
LIT28_18015	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
LIT28_18025	COG0385	Bile acid
LIT28_18030	COG0277	FAD linked oxidase domain protein
LIT28_18045	COG1309	transcriptional regulator
LIT28_18075	COG3852	Histidine kinase
LIT28_18085	COG1285	pathogenesis
LIT28_18100	COG2514	catechol 2,3-dioxygenase activity
LIT28_18105	COG2720	vancomycin resistance protein
LIT28_18140	COG0716	FMN binding
LIT28_18150	COG1051	belongs to the nudix hydrolase family
LIT28_18170	COG1028	Short-chain dehydrogenase reductase Sdr
LIT28_18180	COG0165	Argininosuccinate lyase
LIT28_18195	COG4145	pantothenate transmembrane transporter activity
LIT28_18205	COG1012	belongs to the aldehyde dehydrogenase family
LIT28_18210	COG1028	Short-chain dehydrogenase reductase Sdr
LIT28_18220	COG1657	PFAM Prenyltransferase squalene oxidase
LIT28_18225	COG1963	PFAM Acid phosphatase vanadium-dependent haloperoxidase related
LIT28_18230	COG2962	Rard protein
LIT28_18235	COG3326	Membrane
LIT28_18250	COG0489	protein tyrosine kinase activity
LIT28_18260	COG0314	molybdopterin synthase activity
LIT28_18265	COG0303	'Molybdopterin
LIT28_18270	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
LIT28_18275	COG2116	formate transmembrane transporter activity
LIT28_18285	COG1526	Required for formate dehydrogenase (FDH) activity. Acts as a sulfur carrier protein that transfers sulfur from IscS to the molybdenum cofactor prior to its insertion into FDH
LIT28_18290	COG5609	conserved protein (DUF2294)
LIT28_18295	COG2427	Protein of unknown function (DUF1641)
LIT28_18300	COG3383	formate dehydrogenase (NAD+) activity
LIT28_18335	COG2226	methyltransferase
LIT28_18340	COG4166	transmembrane transport
LIT28_18345	COG4166	transmembrane transport
LIT28_18350	COG4166	transmembrane transport
LIT28_18360	COG1316	TRANSCRIPTIONal
LIT28_18370	COG1595	DNA-templated transcription, initiation
LIT28_18385	COG1131	(ABC) transporter
LIT28_18395	COG0673	inositol 2-dehydrogenase activity
LIT28_18400	COG0188	A type II topoisomerase that negatively supercoils closed circular double-stranded (ds) DNA in an ATP-dependent manner to modulate DNA topology and maintain chromosomes in an underwound state. Negative supercoiling favors strand separation, and DNA replication, transcription, recombination and repair, all of which involve strand separation. Also able to catalyze the interconversion of other topological isomers of dsDNA rings, including catenanes and knotted rings. Type II topoisomerases break and join 2 DNA strands simultaneously in an ATP-dependent manner
LIT28_18405	COG0187	DNA topoisomerase II activity
LIT28_18410	COG1832	CoA-binding protein
LIT28_18415	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LIT28_18420	COG0745	RESPONSE REGULATOR receiver
LIT28_18440	COG4841	protein insertion into membrane
LIT28_18445	COG0824	Thioesterase
LIT28_18475	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LIT28_18485	COG2274	protein secretion by the type I secretion system
LIT28_18490	COG1048	Catalyzes the isomerization of citrate to isocitrate via cis-aconitate
LIT28_18520	COG2211	Major facilitator Superfamily
LIT28_18530	COG0013	Catalyzes the attachment of alanine to tRNA(Ala) in a two-step reaction alanine is first activated by ATP to form Ala- AMP and then transferred to the acceptor end of tRNA(Ala). Also edits incorrectly charged Ser-tRNA(Ala) and Gly-tRNA(Ala) via its editing domain
LIT28_18545	COG0183	Belongs to the thiolase family
LIT28_18550	COG0318	PFAM AMP-dependent synthetase and ligase
LIT28_18555	COG1268	BioY protein
LIT28_18560	COG0318	PFAM AMP-dependent synthetase and ligase
LIT28_18575	COG1396	sequence-specific DNA binding
LIT28_18620	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
LIT28_18630	COG5002	protein histidine kinase activity
LIT28_18635	COG0400	carboxylic ester hydrolase activity
LIT28_18640	COG0346	lactoylglutathione lyase activity
LIT28_18645	COG0591	Belongs to the sodium solute symporter (SSF) (TC 2.A.21) family
LIT28_18650	COG0069	glutamate synthase activity
LIT28_18655	COG1902	pentaerythritol trinitrate reductase activity
LIT28_18660	COG1329	Transcriptional regulator
LIT28_18665	COG0010	Belongs to the arginase family
LIT28_18690	COG2226	methyltransferase
LIT28_18715	COG4846	Membrane protein involved in cytochrome C biogenesis
LIT28_18720	COG0785	Cytochrome C biogenesis protein
LIT28_18730	COG1473	amidohydrolase
LIT28_18740	COG1131	(ABC) transporter
LIT28_18755	COG0583	DNA-binding transcription factor activity
LIT28_18765	COG1346	cytolysis
LIT28_18780	COG0730	response to heat
LIT28_18790	COG5632	N-Acetylmuramoyl-L-alanine amidase
LIT28_18790	COG3409	Peptidoglycan-binding domain 1 protein
LIT28_18805	COG1132	(ABC) transporter
LIT28_18810	COG1132	(ABC) transporter
LIT28_18850	COG0737	Belongs to the 5'-nucleotidase family
LIT28_18860	COG1961	COG1961 Site-specific recombinases, DNA invertase Pin homologs
LIT28_18880	COG1695	Transcriptional regulator
LIT28_18885	COG0174	glutamine synthetase
LIT28_18890	COG0789	Transcriptional regulator
LIT28_18895	COG4100	CystaTHIonine beta-lyase family protein involved in aluminum resistance
LIT28_18900	COG2262	GTPase that associates with the 50S ribosomal subunit and may have a role during protein synthesis or ribosome biogenesis
LIT28_18905	COG2860	membrane
LIT28_18910	COG0464	growth
LIT28_18940	COG1388	LysM domain
LIT28_18940	COG3584	3D domain protein
LIT28_18945	COG1762	phosphoenolpyruvate-dependent sugar phosphotransferase system
LIT28_18945	COG1445	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LIT28_18945	COG1299	protein-N(PI)-phosphohistidine-fructose phosphotransferase system transporter activity
LIT28_18950	COG1105	Belongs to the carbohydrate kinase PfkB family
LIT28_18955	COG1349	DNA-binding transcription factor activity
LIT28_18960	COG1979	alcohol dehydrogenase
LIT28_18965	COG2322	membrane
LIT28_18975	COG1113	amino acid transport
LIT28_18990	COG1408	metallophosphoesterase
LIT28_18995	COG2116	formate transmembrane transporter activity
LIT28_19010	COG2217	Heavy metal translocating P-type atpase
LIT28_19015	COG2608	mercury ion transmembrane transporter activity
LIT28_19020	COG1937	Protein conserved in bacteria
LIT28_19030	COG2819	hydrolase of the alpha beta superfamily
LIT28_19035	COG1120	ATPase activity
LIT28_19040	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LIT28_19045	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LIT28_19050	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
LIT28_19055	COG0708	Exodeoxyribonuclease III
LIT28_19060	COG2169	Transcriptional regulator
LIT28_19065	COG0350	Involved in the cellular defense against the biological effects of O6-methylguanine (O6-MeG) and O4-methylthymine (O4-MeT) in DNA. Repairs the methylated nucleobase in DNA by stoichiometrically transferring the methyl group to a cysteine residue in the enzyme. This is a suicide reaction the enzyme is irreversibly inactivated
LIT28_19070	COG0122	3-methyladenine DNA glycosylase 8-oxoguanine DNA glycosylase
LIT28_19080	COG2364	Membrane
LIT28_19100	COG5001	Diguanylate cyclase
LIT28_19100	COG3300	MHYT domain
LIT28_19120	COG1086	Polysaccharide biosynthesis protein
LIT28_19135	COG0384	phenazine biosynthesis protein PhzF
LIT28_19145	COG1346	cytolysis
LIT28_19150	COG1380	Effector of murein hydrolase LrgA
LIT28_19155	COG1167	Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain MocR family and their eukaryotic orthologs
LIT28_19160	COG0596	Alpha beta hydrolase
LIT28_19160	COG0508	dehydrogenase complex catalyzes the overall conversion of
LIT28_19165	COG2120	A mycothiol (MSH, N-acetylcysteinyl-glucosaminyl- inositol) S-conjugate amidase, it recycles conjugated MSH to the N-acetyl cysteine conjugate (AcCys S-conjugate, a mercapturic acid) and the MSH precursor. Involved in MSH-dependent detoxification of a number of alkylating agents and antibiotics
LIT28_19185	COG1404	Belongs to the peptidase S8 family
LIT28_19190	COG3773	Cell wall hydrolase
LIT28_19200	COG1368	sulfuric ester hydrolase activity
LIT28_19205	COG0699	ATPase. Has a role at an early stage in the morphogenesis of the spore coat
LIT28_19235	COG4550	Control of competence regulator ComK, YlbF/YmcA
LIT28_19245	COG1013	pyruvate-flavodoxin oxidoreductase activity
LIT28_19250	COG0674	pyruvate-flavodoxin oxidoreductase activity
LIT28_19250	COG1014	Oxidoreductase required for the transfer of electrons from pyruvate to flavodoxin
LIT28_19260	COG2359	stage V sporulation protein S
LIT28_19265	COG1692	metallophosphoesterase
LIT28_19285	COG0558	Belongs to the CDP-alcohol phosphatidyltransferase class-I family
LIT28_19290	COG1426	Protein conserved in bacteria
LIT28_19305	COG0300	oxidoreductase activity
LIT28_19310	COG0612	Peptidase, M16
LIT28_19315	COG0612	Peptidase, M16
LIT28_19320	COG1079	Belongs to the binding-protein-dependent transport system permease family
LIT28_19325	COG4603	Belongs to the binding-protein-dependent transport system permease family
LIT28_19330	COG3845	ABC transporter
LIT28_19335	COG1744	ABC transporter substrate-binding protein PnrA-like
LIT28_19340	COG2188	Transcriptional regulator
LIT28_19345	COG1674	ftsk spoiiie
LIT28_19355	COG0740	serine-type endopeptidase activity
LIT28_19365	COG2801	Transposase and inactivated derivatives
LIT28_19370	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
LIT28_19380	COG0527	aspartate kinase activity
LIT28_19385	COG0136	Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L- aspartyl-4-phosphate
LIT28_19390	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
LIT28_19395	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
LIT28_19400	COG1873	PFAM PRC-barrel domain
LIT28_19405	COG0612	Peptidase, M16
LIT28_19410	COG0726	polysaccharide deacetylase
LIT28_19425	COG0196	riboflavin kinase activity
LIT28_19440	COG1550	Protein conserved in bacteria
LIT28_19450	COG1358	cellular component organization or biogenesis
LIT28_19455	COG2740	Nucleic-acid-binding protein implicated in transcription termination
LIT28_19460	COG0195	Participates in both transcription termination and antitermination
LIT28_19480	COG0750	zinc metalloprotease
LIT28_19490	COG4589	Belongs to the CDS family
LIT28_19510	COG0264	Associates with the EF-Tu.GDP complex and induces the exchange of GDP to GTP. It remains bound to the aminoacyl-tRNA.EF- Tu.GTP complex up to the GTP hydrolysis stage on the ribosome
LIT28_19535	COG4974	Belongs to the 'phage' integrase family
LIT28_19545	COG0550	Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA-(5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supercoils. Finally, in the religation step, the DNA 3'-OH attacks the covalent intermediate to expel the active-site tyrosine and restore the DNA phosphodiester backbone
LIT28_19550	COG0758	DNA mediated transformation
LIT28_19555	COG0074	Succinyl-CoA synthetase functions in the citric acid cycle (TCA), coupling the hydrolysis of succinyl-CoA to the synthesis of either ATP or GTP and thus represents the only step of substrate-level phosphorylation in the TCA. The alpha subunit of the enzyme binds the substrates coenzyme A and phosphate, while succinate binding and nucleotide specificity is provided by the beta subunit
LIT28_19595	COG1837	Belongs to the UPF0109 family
LIT28_19605	COG0541	Involved in targeting and insertion of nascent membrane proteins into the cytoplasmic membrane. Binds to the hydrophobic signal sequence of the ribosome-nascent chain (RNC) as it emerges from the ribosomes. The SRP-RNC complex is then targeted to the cytoplasmic membrane where it interacts with the SRP receptor FtsY
LIT28_19615	COG0552	protein localization to endoplasmic reticulum
LIT28_19620	COG1196	nuclear chromosome segregation
LIT28_19630	COG0236	Carrier of the growing fatty acid chain in fatty acid biosynthesis
LIT28_19635	COG1028	Short-chain dehydrogenase reductase Sdr
LIT28_19640	COG0331	[acyl-carrier-protein] S-malonyltransferase activity
LIT28_19650	COG1349	DNA-binding transcription factor activity
LIT28_19650	COG2050	protein possibly involved in aromatic compounds catabolism
LIT28_19655	COG1200	Critical role in recombination and DNA repair. Helps process Holliday junction intermediates to mature products by catalyzing branch migration. Has a DNA unwinding activity characteristic of a DNA helicase with a 3'- to 5'- polarity. Unwinds branched duplex DNA (Y-DNA)
LIT28_19660	COG1461	Dihydroxyacetone kinase
LIT28_19665	COG1302	Protein conserved in bacteria
LIT28_19680	COG1564	THIamine pyrophosphokinase
LIT28_19685	COG0036	Belongs to the ribulose-phosphate 3-epimerase family
LIT28_19695	COG0515	serine threonine protein kinase
LIT28_19695	COG2815	serine threonine protein kinase
LIT28_19700	COG0631	protein serine/threonine phosphatase activity
LIT28_19710	COG0781	Involved in transcription antitermination. Required for transcription of ribosomal RNA (rRNA) genes. Binds specifically to the boxA antiterminator sequence of the ribosomal RNA (rrn) operons
LIT28_19710	COG0144	Specifically methylates the cytosine at position 967 (m5C967) of 16S rRNA
LIT28_19720	COG0242	peptide deformylase activity
LIT28_19725	COG1198	Involved in the restart of stalled replication forks. Recognizes and binds the arrested nascent DNA chain at stalled replication forks. It can open the DNA duplex, via its helicase activity, and promote assembly of the primosome and loading of the major replicative helicase DnaB onto DNA
LIT28_19730	COG0452	Catalyzes two steps in the biosynthesis of coenzyme A. In the first step cysteine is conjugated to 4'-phosphopantothenate to form 4-phosphopantothenoylcysteine, in the latter compound is decarboxylated to form 4'-phosphopantotheine
LIT28_19735	COG1758	RNA polymerase activity
LIT28_19750	COG1561	YicC-like family, N-terminal region
LIT28_19755	COG0474	ATPase, P-type transporting, HAD superfamily, subfamily IC
LIT28_19765	COG0006	proline dipeptidase activity
LIT28_19785	COG3069	C4-dicarboxylate transmembrane transporter activity
LIT28_19850	COG0564	pseudouridine synthase activity
LIT28_19870	COG3599	regulation of cell shape
LIT28_19875	COG2302	S4 RNA-binding domain
LIT28_19880	COG0762	integral membrane protein
LIT28_19890	COG0325	Pyridoxal 5'-phosphate (PLP)-binding protein, which is involved in PLP homeostasis
LIT28_19900	COG1873	PFAM PRC-barrel domain
LIT28_19905	COG1191	sigma factor activity
LIT28_19910	COG1191	sigma factor activity
LIT28_19920	COG0206	Essential cell division protein that forms a contractile ring structure (Z ring) at the future cell division site. The regulation of the ring assembly controls the timing and the location of cell division. One of the functions of the FtsZ ring is to recruit other cell division proteins to the septum to produce a new cell wall between the dividing cells. Binds GTP and shows GTPase activity
LIT28_19925	COG0849	cell division
LIT28_19930	COG1589	Essential cell division protein. May link together the upstream cell division proteins, which are predominantly cytoplasmic, with the downstream cell division proteins, which are predominantly periplasmic. May control correct divisome assembly
LIT28_19945	COG0772	Belongs to the SEDS family
LIT28_19960	COG0769	Catalyzes the addition of meso-diaminopimelic acid to the nucleotide precursor UDP-N-acetylmuramoyl-L-alanyl-D-glutamate (UMAG) in the biosynthesis of bacterial cell-wall peptidoglycan
LIT28_19965	COG0768	penicillin binding
LIT28_19970	COG0768	penicillin binding
LIT28_19975	COG4839	cell division protein FtsL
LIT28_19990	COG1893	Catalyzes the NADPH-dependent reduction of ketopantoate into pantoic acid
LIT28_20005	COG0333	Belongs to the bacterial ribosomal protein bL32 family
LIT28_20010	COG1399	metal-binding, possibly nucleic acid-binding protein
LIT28_20020	COG3480	Lon protease (S16) C-terminal proteolytic domain
LIT28_20025	COG1752	Esterase of the alpha-beta hydrolase superfamily
LIT28_20030	COG3314	Sporulation integral membrane protein YlbJ
LIT28_20040	COG0742	ribosomal rna small subunit methyltransferase
LIT28_20055	COG3679	Belongs to the UPF0342 family
LIT28_20060	COG0406	alpha-ribazole phosphatase activity
LIT28_20075	COG2340	Cysteine-rich secretory protein family
LIT28_20085	COG3336	cytochrome c oxidase
LIT28_20120	COG1038	Catalyzes a 2-step reaction, involving the ATP-dependent carboxylation of the covalently attached biotin in the first step and the transfer of the carboxyl group to pyruvate in the second
LIT28_20125	COG0772	Belongs to the SEDS family
LIT28_20135	COG2041	Part of the MsrPQ system that repairs oxidized periplasmic proteins containing methionine sulfoxide residues (Met-O), using respiratory chain electrons. Thus protects these proteins from oxidative-stress damage caused by reactive species of oxygen and chlorine generated by the host defense mechanisms. MsrPQ is essential for the maintenance of envelope integrity under bleach stress, rescuing a wide series of structurally unrelated periplasmic proteins from methionine oxidation. The catalytic subunit MsrP is non-stereospecific, being able to reduce both (R-) and (S-) diastereoisomers of methionine sulfoxide
LIT28_20140	COG1875	ATPase related to phosphate starvation-inducible protein PhoH
LIT28_20150	COG4896	Protein conserved in bacteria
LIT28_20165	COG1217	gtp-binding protein TYPA
LIT28_20175	COG0483	inositol monophosphate 1-phosphatase activity
LIT28_20195	COG1982	Orn Lys Arg decarboxylase major
LIT28_20245	COG0022	dehydrogenase e1 component
LIT28_20250	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
LIT28_20260	COG0242	peptide deformylase activity
LIT28_20265	COG0561	phosphatase activity
LIT28_20270	COG5503	Protein of unknown function (DUF1447)
LIT28_20275	COG0595	An RNase that has 5'-3' exonuclease and possibly endonuclease activity. Involved in maturation of rRNA and in some organisms also mRNA maturation and or decay
LIT28_20280	COG0569	domain protein
LIT28_20300	COG0583	DNA-binding transcription factor activity
LIT28_20305	COG0517	IMP dehydrogenase activity
LIT28_20315	COG1978	Selenoprotein B, glycine betaine sarcosine D-proline reductase family
LIT28_20325	COG4703	Protein of unknown function (DUF1797)
LIT28_20340	COG2200	EAL domain
LIT28_20345	COG1028	Short-chain dehydrogenase reductase Sdr
LIT28_20350	COG1408	metallophosphoesterase
LIT28_20360	COG0855	Catalyzes the reversible transfer of the terminal phosphate of ATP to form a long-chain polyphosphate (polyP)
LIT28_20395	COG2814	Major facilitator Superfamily
LIT28_20415	COG3209	COG3209 Rhs family protein
LIT28_20425	COG2205	protein histidine kinase activity
LIT28_20435	COG0436	Aminotransferase
LIT28_20440	COG1609	Transcriptional regulator
LIT28_20445	COG3833	ABC-type maltose transport systems, permease component
LIT28_20450	COG1175	transmembrane transport
LIT28_20455	COG2182	Extracellular solute-binding protein
LIT28_20465	COG0366	Alpha amylase catalytic
LIT28_20470	COG3842	ATPase activity
LIT28_20505	COG1195	it is required for DNA replication and normal SOS inducibility. RecF binds preferentially to single-stranded, linear DNA. It also seems to bind ATP
LIT28_20510	COG0183	Belongs to the thiolase family
LIT28_20540	COG1695	Transcriptional regulator
LIT28_20545	COG1028	Short-chain dehydrogenase reductase Sdr
LIT28_20565	COG0388	Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source
LIT28_20570	COG0436	Aminotransferase
LIT28_20605	COG2084	Dehydrogenase
LIT28_20615	COG2199	diguanylate cyclase activity
LIT28_20620	COG0778	Nitroreductase
LIT28_20645	COG1264	protein-N(PI)-phosphohistidine-sugar phosphotransferase activity
LIT28_20645	COG2190	(PTS) system
LIT28_20645	COG1263	PTS System
LIT28_20650	COG3711	transcriptional antiterminator
LIT28_20660	COG2188	Transcriptional regulator
LIT28_20670	COG1820	Belongs to the metallo-dependent hydrolases superfamily. NagA family
LIT28_20695	COG1547	Domain of unknown function (DUF309)
LIT28_20700	COG0456	acetyltransferase
LIT28_20705	COG0652	PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides
LIT28_20710	COG4086	secreted protein
LIT28_20715	COG0561	phosphatase activity
LIT28_20720	COG0697	spore germination
LIT28_20735	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LIT28_20760	COG0733	neurotransmitter:sodium symporter activity
LIT28_20780	COG1686	Belongs to the peptidase S11 family
LIT28_20785	COG1725	Transcriptional regulator
LIT28_20790	COG1131	(ABC) transporter
LIT28_20810	COG1846	Transcriptional regulator
LIT28_20825	COG0598	Magnesium transport protein CorA
LIT28_20850	COG4974	Belongs to the 'phage' integrase family
LIT28_20860	COG0735	belongs to the Fur family
LIT28_20865	COG1300	Membrane
LIT28_20885	COG0667	Aldo Keto reductase
LIT28_20890	COG0656	L-ascorbic acid biosynthetic process
LIT28_20895	COG0456	acetyltransferase
LIT28_20895	COG2320	Catalyzes the phosphorylation of the 3'-hydroxyl group of dephosphocoenzyme A to form coenzyme A
LIT28_20905	COG1525	nuclease
LIT28_20905	COG4085	toxin activity
LIT28_20905	COG0737	Belongs to the 5'-nucleotidase family
LIT28_20915	COG0596	Alpha beta hydrolase
LIT28_20920	COG2056	Na+-H+ antiporter family
LIT28_20925	COG1609	Transcriptional regulator
LIT28_20930	COG0454	-acetyltransferase
LIT28_20935	COG1073	alpha beta
LIT28_20950	COG0117	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LIT28_20950	COG1985	Converts 2,5-diamino-6-(ribosylamino)-4(3h)-pyrimidinone 5'-phosphate into 5-amino-6-(ribosylamino)-2,4(1h,3h)- pyrimidinedione 5'-phosphate
LIT28_20955	COG0307	riboflavin synthase, alpha
LIT28_20980	COG4106	trans-aconitate 2-methyltransferase activity
LIT28_20985	COG1073	alpha beta
LIT28_20985	COG2226	methyltransferase
LIT28_21000	COG0161	adenosylmethionine-8-amino-7-oxononanoate transaminase activity
LIT28_21010	COG1757	Na H antiporter
LIT28_21015	COG0737	Belongs to the 5'-nucleotidase family
LIT28_21025	COG1522	sequence-specific DNA binding
LIT28_21095	COG4992	N2-acetyl-L-ornithine:2-oxoglutarate 5-aminotransferase activity
LIT28_21120	COG0300	oxidoreductase activity
LIT28_21125	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LIT28_21130	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
LIT28_21135	COG1760	l-serine dehydratase
LIT28_21140	COG1760	l-serine dehydratase
LIT28_21165	COG2195	Cleaves the N-terminal amino acid of tripeptides
LIT28_21170	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LIT28_21185	COG1376	ErfK ybiS ycfS ynhG family protein
LIT28_21190	COG4129	membrane
LIT28_21195	COG1126	abc transporter atp-binding protein
LIT28_21200	COG0765	amino acid transport
LIT28_21205	COG0834	ABC-type amino acid transport signal transduction systems periplasmic component domain
LIT28_21225	COG0772	Belongs to the SEDS family
LIT28_21230	COG0508	dehydrogenase complex catalyzes the overall conversion of
LIT28_21235	COG0022	dehydrogenase e1 component
LIT28_21240	COG1071	oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor
LIT28_21245	COG1249	Belongs to the class-I pyridine nucleotide-disulfide oxidoreductase family
LIT28_21260	COG0280	phosphate acetyltransferase
LIT28_21265	COG3829	transcription factor binding
LIT28_21265	COG3290	protein histidine kinase activity
LIT28_21275	COG0584	glycerophosphoryl diester phosphodiesterase
LIT28_21280	COG3093	addiction module antidote protein HigA
LIT28_21290	COG0745	RESPONSE REGULATOR receiver
LIT28_21295	COG0750	zinc metalloprotease
LIT28_21300	COG0497	DNA recombination
LIT28_21310	COG1189	Ribosomal RNA methyltransferase RrmJ FtsJ
LIT28_21320	COG0142	geranyltranstransferase activity
LIT28_21345	COG1302	Protein conserved in bacteria
LIT28_21350	COG0439	Biotin carboxylase
LIT28_21355	COG0511	ligase activity, forming carbon-carbon bonds
LIT28_21400	COG3854	ATPases associated with a variety of cellular activities
LIT28_21420	COG0006	proline dipeptidase activity
LIT28_21435	COG3872	metal-dependent enzyme
LIT28_21445	COG0637	HAD-superfamily hydrolase subfamily IA, variant 3
LIT28_21480	COG0095	Lipoate-protein ligase
LIT28_21485	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LIT28_21495	COG1609	Transcriptional regulator
LIT28_21505	COG2076	Multidrug Resistance protein
LIT28_21510	COG2076	Multidrug Resistance protein
LIT28_21545	COG1131	(ABC) transporter
LIT28_21550	COG1725	Transcriptional regulator
LIT28_21565	COG1003	The glycine cleavage system catalyzes the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor
LIT28_21580	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
LIT28_21645	COG1459	type II secretion system
LIT28_21650	COG2804	Type II secretory pathway, ATPase PulE Tfp pilus assembly pathway, ATPase PilB
LIT28_21705	COG1410	methionine synthase
LIT28_21705	COG0646	methionine synthase
LIT28_21710	COG0646	methionine synthase
LIT28_21710	COG0685	methylenetetrahydrofolate reductase (NAD(P)H) activity
LIT28_21715	COG0626	cystathionine gamma-synthase activity
LIT28_21720	COG0626	cystathionine gamma-synthase activity
LIT28_21740	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LIT28_21750	COG1940	carbohydrate kinase activity
LIT28_21755	COG4483	Protein conserved in bacteria
LIT28_21760	COG0212	Belongs to the 5-formyltetrahydrofolate cyclo-ligase family
LIT28_21765	COG0267	Belongs to the bacterial ribosomal protein bL33 family
LIT28_21770	COG1208	COG1208 Nucleoside-diphosphate-sugar pyrophosphorylase involved in lipopolysaccharide biosynthesis translation initiation factor 2B, gamma epsilon subunits eIF-2Bgamma eIF-2Bepsilon
LIT28_21775	COG0704	Plays a role in the regulation of phosphate uptake
LIT28_21785	COG0581	inorganic phosphate transmembrane transporter activity
LIT28_21790	COG0573	inorganic phosphate transmembrane transporter activity
LIT28_21795	COG0226	Part of the ABC transporter complex PstSACB involved in phosphate import
LIT28_21800	COG0768	penicillin binding
LIT28_21805	COG0477	Major facilitator Superfamily
LIT28_21810	COG0605	Destroys radicals which are normally produced within the cells and which are toxic to biological systems
LIT28_21835	COG0735	belongs to the Fur family
LIT28_21840	COG1108	ABC-type Mn2 Zn2 transport systems permease components
LIT28_21845	COG1121	(ABC) transporter
LIT28_21850	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
LIT28_21880	COG0327	Belongs to the GTP cyclohydrolase I type 2 NIF3 family
LIT28_21885	COG2384	SAM-dependent methyltransferase
LIT28_21890	COG2010	Cytochrome c
LIT28_21895	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
LIT28_21900	COG0358	DNA primase activity
LIT28_21910	COG0517	IMP dehydrogenase activity
LIT28_21925	COG1159	An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism
LIT28_21930	COG0295	cytidine deaminase activity
LIT28_21935	COG0818	Recycling of diacylglycerol produced during the turnover of membrane phospholipid
LIT28_21945	COG1480	7TM receptor with intracellular HD hydrolase
LIT28_21950	COG1702	phosphate starvation-inducible protein PhoH
LIT28_21965	COG1610	YqeY-like protein
LIT28_21970	COG0828	Belongs to the bacterial ribosomal protein bS21 family
LIT28_21975	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
LIT28_21980	COG1385	rRNA (uridine-N3-)-methyltransferase activity
LIT28_22010	COG0635	Involved in the biosynthesis of porphyrin-containing compound
LIT28_22015	COG1733	regulation of RNA biosynthetic process
LIT28_22040	COG1466	dna polymerase III delta subunit
LIT28_22050	COG2333	competence protein COMEC
LIT28_22050	COG0658	competence protein
LIT28_22055	COG2131	deaminase
LIT28_22060	COG1555	photosystem II stabilization
LIT28_22060	COG1596	polysaccharide export
LIT28_22065	COG0345	Catalyzes the reduction of 1-pyrroline-5-carboxylate (PCA) to L-proline
LIT28_22070	COG2226	methyltransferase
LIT28_22075	COG0799	negative regulation of ribosome biogenesis
LIT28_22080	COG1713	HD superfamily hydrolase involved in NAD metabolism
LIT28_22090	COG1534	Rna-binding protein
LIT28_22100	COG1161	Required for a late step of 50S ribosomal subunit assembly. Has GTPase activity
LIT28_22105	COG2179	HAD superfamily (subfamily IIIA) phosphatase, TIGR01668
LIT28_22140	COG0778	Nitroreductase
LIT28_22145	COG2357	RelA SpoT domain protein
LIT28_22155	COG1785	Belongs to the alkaline phosphatase family
LIT28_22165	COG2267	carboxylic ester hydrolase activity
LIT28_22200	COG1404	Belongs to the peptidase S8 family
LIT28_22205	COG3186	Phenylalanine-4-hydroxylase
LIT28_22210	COG2154	pterin-4-alpha-carbinolamine dehydratase
LIT28_22215	COG2801	Transposase and inactivated derivatives
LIT28_22225	COG2514	catechol 2,3-dioxygenase activity
LIT28_22230	COG2259	Doxx family
LIT28_22270	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
LIT28_22280	COG1012	belongs to the aldehyde dehydrogenase family
LIT28_22280	COG1454	alcohol dehydrogenase
LIT28_22285	COG0626	cystathionine gamma-synthase activity
LIT28_22290	COG0031	Belongs to the cysteine synthase cystathionine beta- synthase family
LIT28_22315	COG0768	penicillin binding
LIT28_22330	COG0826	peptidase U32
LIT28_22335	COG0826	peptidase U32
LIT28_22340	COG4122	O-methyltransferase activity
LIT28_22345	COG1559	Functions as a peptidoglycan terminase that cleaves nascent peptidoglycan strands endolytically to terminate their elongation
LIT28_22375	COG0628	permease
LIT28_22395	COG0507	A helicase nuclease that prepares dsDNA breaks (DSB) for recombinational DNA repair. Binds to DSBs and unwinds DNA via a highly rapid and processive ATP-dependent bidirectional helicase activity. Unwinds dsDNA until it encounters a Chi (crossover hotspot instigator) sequence from the 3' direction. Cuts ssDNA a few nucleotides 3' to the Chi site. The properties and activities of the enzyme are changed at Chi. The Chi-altered holoenzyme produces a long 3'-ssDNA overhang and facilitates RecA-binding to the ssDNA for homologous DNA recombination and repair. Holoenzyme degrades any linearized DNA that is unable to undergo homologous recombination. In the holoenzyme this subunit has ssDNA-dependent ATPase and 5'-3' helicase activity. When added to pre-assembled RecBC greatly stimulates nuclease activity and augments holoenzyme processivity. Negatively regulates the RecA-loading ability of RecBCD
LIT28_22410	COG1104	cysteine desulfurase activity
LIT28_22415	COG1959	2 iron, 2 sulfur cluster binding
LIT28_22420	COG2256	atpase related to the helicase subunit of the holliday junction resolvase
LIT28_22430	COG1179	involved in molybdopterin and THIamine biosynthesis family 1
LIT28_22465	COG0317	In eubacteria ppGpp (guanosine 3'-diphosphate 5-' diphosphate) is a mediator of the stringent response that coordinates a variety of cellular activities in response to changes in nutritional abundance
LIT28_22475	COG4199	Single-strand DNA-specific exonuclease, C terminal domain
LIT28_22475	COG0608	single-stranded DNA 5'-3' exodeoxyribonuclease activity
LIT28_22480	COG0053	Belongs to the cation diffusion facilitator (CDF) transporter (TC 2.A.4) family
LIT28_22485	COG0342	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LIT28_22485	COG0341	Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. SecDF uses the proton motive force (PMF) to complete protein translocation after the ATP-dependent function of SecA
LIT28_22495	COG2244	polysaccharide biosynthetic process
LIT28_22500	COG2323	membrane
LIT28_22510	COG1862	Preprotein translocase
LIT28_22515	COG0343	queuine tRNA-ribosyltransferase activity
LIT28_22540	COG4594	ABC-type Fe3 -citrate transport system, periplasmic component
LIT28_22570	COG0157	Belongs to the NadC ModD family
LIT28_22575	COG0029	Catalyzes the oxidation of L-aspartate to iminoaspartate
LIT28_22580	COG1104	cysteine desulfurase activity
LIT28_22585	COG1827	regulation of RNA biosynthetic process
LIT28_22590	COG2258	MOSC domain
LIT28_22595	COG0077	Prephenate dehydratase
LIT28_22600	COG0577	efflux transmembrane transporter activity
LIT28_22605	COG0577	efflux transmembrane transporter activity
LIT28_22610	COG1136	(ABC) transporter
LIT28_22615	COG5002	protein histidine kinase activity
LIT28_22620	COG0745	RESPONSE REGULATOR receiver
LIT28_22630	COG3290	protein histidine kinase activity
LIT28_22640	COG2868	ribosomal protein
LIT28_22650	COG1530	ribonuclease E activity
LIT28_22655	COG1994	Peptidase M50
LIT28_22660	COG0739	heme binding
LIT28_22665	COG2894	cell division
LIT28_22685	COG1077	Cell shape determining protein MreB Mrl
LIT28_22700	COG5293	efflux transmembrane transporter activity
LIT28_22710	COG1409	Hydrolyzes cAMP to 5'-AMP. Plays an important regulatory role in modulating the intracellular concentration of cAMP, thereby influencing cAMP-dependent processes
LIT28_22745	COG0285	dihydrofolate synthase activity
LIT28_22760	COG1388	LysM domain
LIT28_22770	COG0113	porphobilinogen synthase activity
LIT28_22775	COG1587	Uroporphyrinogen-III synthase
LIT28_22785	COG0755	Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes
LIT28_22795	COG1846	Transcriptional regulator
LIT28_22800	COG1764	response to oxidative stress
LIT28_22815	COG1067	ATP-dependent peptidase activity
LIT28_22815	COG0470	DNA polymerase III
LIT28_22870	COG0622	Phosphoesterase
LIT28_22885	COG5401	PFAM Sporulation and spore germination
LIT28_22905	COG2197	response regulator
LIT28_22910	COG2233	PERMEase
LIT28_22920	COG0402	S-adenosylhomocysteine deaminase activity
LIT28_22925	COG0402	S-adenosylhomocysteine deaminase activity
LIT28_22935	COG1173	ABC-type dipeptide oligopeptide nickel transport systems, permease components
LIT28_22945	COG0444	Belongs to the ABC transporter superfamily
LIT28_22950	COG4608	Belongs to the ABC transporter superfamily
LIT28_22955	COG3275	phosphorelay sensor kinase activity
LIT28_22960	COG3279	Response regulator of the LytR AlgR family
LIT28_22970	COG1983	PspC domain protein
LIT28_22975	COG1396	sequence-specific DNA binding
LIT28_22980	COG0697	spore germination
LIT28_22990	COG1959	2 iron, 2 sulfur cluster binding
LIT28_22995	COG1668	transmembrane transport
LIT28_23000	COG4152	abc transporter atp-binding protein
LIT28_23005	COG2503	HAD superfamily, subfamily IIIB (Acid phosphatase)
LIT28_23010	COG1360	Flagellar Motor Protein
LIT28_23015	COG1291	archaeal or bacterial-type flagellum-dependent cell motility
LIT28_23020	COG1876	peptidase activity
LIT28_23025	COG0824	Thioesterase
LIT28_23030	COG0479	Belongs to the succinate dehydrogenase fumarate reductase iron-sulfur protein family
LIT28_23035	COG1053	succinate dehydrogenase
LIT28_23040	COG2009	succinate dehydrogenase
LIT28_23045	COG1719	4-vinyl reductase, 4VR
LIT28_23055	COG3118	belongs to the thioredoxin family
LIT28_23060	COG2025	fatty acid beta-oxidation using acyl-CoA dehydrogenase
LIT28_23065	COG2086	electron transfer activity
LIT28_23070	COG1024	Enoyl-CoA hydratase
LIT28_23075	COG1309	transcriptional regulator
LIT28_23080	COG0318	PFAM AMP-dependent synthetase and ligase
LIT28_23100	COG2318	DinB family
LIT28_23130	COG1131	(ABC) transporter
LIT28_23135	COG2205	protein histidine kinase activity
LIT28_23140	COG0745	RESPONSE REGULATOR receiver
LIT28_23150	COG4895	conserved protein (DUF2196)
LIT28_23155	COG1092	Specifically methylates the guanine in position 2445 (m2G2445) and the guanine in position 2069 (m7G2069) of 23S rRNA
LIT28_23165	COG4509	Sortase family
LIT28_23170	COG1120	ATPase activity
LIT28_23185	COG5386	Cell surface protein
LIT28_23195	COG5386	Cell surface protein
LIT28_23200	COG1114	Component of the transport system for branched-chain amino acids
LIT28_23205	COG1187	pseudouridine synthase activity
LIT28_23215	COG1387	Histidinol phosphatase and related hydrolases of the PHP family
LIT28_23215	COG1796	DNA polymerase
LIT28_23220	COG1286	toxin biosynthetic process
LIT28_23260	COG0016	Belongs to the class-II aminoacyl-tRNA synthetase family. Phe-tRNA synthetase alpha subunit type 1 subfamily
LIT28_23265	COG0566	Belongs to the class IV-like SAM-binding methyltransferase superfamily. RNA methyltransferase TrmH family
LIT28_23275	COG1418	mRNA catabolic process
LIT28_23305	COG2814	Major facilitator Superfamily
LIT28_23310	COG1566	PFAM secretion protein HlyD family protein
LIT28_23315	COG1309	transcriptional regulator
LIT28_23320	COG1363	Peptidase, m42
LIT28_23345	COG0441	Catalyzes the attachment of threonine to tRNA(Thr) in a two-step reaction L-threonine is first activated by ATP to form Thr-AMP and then transferred to the acceptor end of tRNA(Thr)
LIT28_23355	COG1484	DNA-dependent DNA replication
LIT28_23360	COG3611	Membrane attachment protein
LIT28_23370	COG1586	Catalyzes the decarboxylation of S-adenosylmethionine to S-adenosylmethioninamine (dcAdoMet), the propylamine donor required for the synthesis of the polyamines spermine and spermidine from the diamine putrescine
LIT28_23375	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
LIT28_23380	COG0237	dephospho-CoA kinase activity
LIT28_23385	COG1971	Probably functions as a manganese efflux pump
LIT28_23395	COG0258	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LIT28_23395	COG0749	In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity
LIT28_23400	COG5002	protein histidine kinase activity
LIT28_23405	COG0745	RESPONSE REGULATOR receiver
LIT28_23425	COG0538	isocitrate dehydrogenase activity
LIT28_23430	COG0372	Belongs to the citrate synthase family
LIT28_23440	COG0628	permease
LIT28_23445	COG3030	protein affecting phage T7 exclusion by the F plasmid
LIT28_23470	COG1725	Transcriptional regulator
LIT28_23475	COG0281	malic enzyme
LIT28_23480	COG0587	DNA-directed DNA polymerase activity
LIT28_23495	COG0618	3'(2'),5'-bisphosphate nucleotidase activity
LIT28_23510	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
LIT28_23520	COG4109	DRTGG domain
LIT28_23535	COG0006	proline dipeptidase activity
LIT28_23575	COG0662	Cupin 2, conserved barrel domain protein
LIT28_23585	COG1476	TRANSCRIPTIONal
LIT28_23600	COG1028	Short-chain dehydrogenase reductase Sdr
LIT28_23605	COG0589	response to stress
LIT28_23645	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
LIT28_23670	COG0827	DNA restriction-modification system
LIT28_23675	COG2077	Thiol-specific peroxidase that catalyzes the reduction of hydrogen peroxide and organic hydroperoxides to water and alcohols, respectively. Plays a role in cell protection against oxidative stress by detoxifying peroxides
LIT28_23680	COG3874	Sporulation protein YtfJ
LIT28_23695	COG1574	metal-dependent hydrolase with the TIM-barrel fold
LIT28_23705	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LIT28_23720	COG1104	cysteine desulfurase activity
LIT28_23725	COG4477	modulates the frequency and position of FtsZ ring formation. Inhibits FtsZ ring formation at polar sites. Interacts either with FtsZ or with one of its binding partners to promote depolymerization
LIT28_23735	COG0697	spore germination
LIT28_23740	COG1309	transcriptional regulator
LIT28_23745	COG1956	GAF domain-containing protein
LIT28_23750	COG0626	cystathionine gamma-synthase activity
LIT28_23755	COG0522	One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit
LIT28_23780	COG1595	DNA-templated transcription, initiation
LIT28_23795	COG0365	Catalyzes the conversion of acetate into acetyl-CoA (AcCoA), an essential intermediate at the junction of anabolic and catabolic pathways. AcsA undergoes a two-step reaction. In the first half reaction, AcsA combines acetate with ATP to form acetyl-adenylate (AcAMP) intermediate. In the second half reaction, it can then transfer the acetyl group from AcAMP to the sulfhydryl group of CoA, forming the product AcCoA
LIT28_23800	COG0454	-acetyltransferase
LIT28_23805	COG0517	IMP dehydrogenase activity
LIT28_23810	COG0123	including yeast histone deacetylase and acetoin utilization protein
LIT28_23825	COG0745	RESPONSE REGULATOR receiver
LIT28_23835	COG0666	response to abiotic stimulus
LIT28_23870	COG1609	Transcriptional regulator
LIT28_23875	COG4851	CamS sex pheromone cAM373 precursor
LIT28_23880	COG3118	belongs to the thioredoxin family
LIT28_23890	COG2309	aminopeptidase activity
LIT28_23910	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LIT28_23925	COG1674	ftsk spoiiie
LIT28_23940	COG0073	Is required not only for elongation of protein synthesis but also for the initiation of all mRNA translation through initiator tRNA(fMet) aminoacylation
LIT28_23950	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LIT28_23955	COG1986	Phosphatase that hydrolyzes non-canonical purine nucleotides such as XTP and ITP to their respective diphosphate derivatives. Probably excludes non-canonical purines from DNA precursor pool, thus preventing their incorporation into DNA and avoiding chromosomal lesions
LIT28_23960	COG1363	Peptidase, m42
LIT28_23970	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LIT28_23985	COG0510	thiamine kinase activity
LIT28_23990	COG1523	belongs to the glycosyl hydrolase 13 family
LIT28_24000	COG0624	Catalyzes the hydrolysis of N-succinyl-L,L- diaminopimelic acid (SDAP), forming succinate and LL-2,6- diaminoheptanedioate (DAP), an intermediate involved in the bacterial biosynthesis of lysine and meso-diaminopimelic acid, an essential component of bacterial cell walls
LIT28_24005	COG1349	DNA-binding transcription factor activity
LIT28_24010	COG1187	pseudouridine synthase activity
LIT28_24015	COG2244	polysaccharide biosynthetic process
LIT28_24020	COG2081	HI0933 family
LIT28_24025	COG2814	Major facilitator Superfamily
LIT28_24035	COG3832	glyoxalase III activity
LIT28_24055	COG1329	Transcriptional regulator
LIT28_24080	COG0314	molybdopterin synthase activity
LIT28_24085	COG1763	Mo-molybdopterin cofactor biosynthetic process
LIT28_24090	COG0303	'Molybdopterin
LIT28_24100	COG0476	Involved in molybdopterin and thiamine biosynthesis, family 2
LIT28_24105	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
LIT28_24125	COG0607	Catalyzes the ATP-dependent transfer of a sulfur to tRNA to produce 4-thiouridine in position 8 of tRNAs, which functions as a near-UV photosensor. Also catalyzes the transfer of sulfur to the sulfur carrier protein ThiS, forming ThiS-thiocarboxylate. This is a step in the synthesis of thiazole, in the thiamine biosynthesis pathway. The sulfur is donated as persulfide by IscS
LIT28_24135	COG2021	Transfers an acetyl group from acetyl-CoA to L- homoserine, forming acetyl-L-homoserine
LIT28_24180	COG2814	Major facilitator Superfamily
LIT28_24185	COG0475	glutathione-regulated potassium exporter activity
LIT28_24190	COG0490	domain, Protein
LIT28_24195	COG0582	viral genome integration into host DNA
LIT28_24205	COG1136	(ABC) transporter
LIT28_24225	COG1242	4 iron, 4 sulfur cluster binding
LIT28_24230	COG2519	Catalyzes the S-adenosyl-L-methionine-dependent formation of N(1)-methyladenine at position 58 (m1A58) in tRNA
LIT28_24245	COG1794	racemase activity, acting on amino acids and derivatives
LIT28_24265	COG2267	carboxylic ester hydrolase activity
LIT28_24270	COG0663	COG0663 Carbonic anhydrases acetyltransferases, isoleucine patch superfamily
LIT28_24275	COG0671	phosphoesterase, PA-phosphatase related
LIT28_24280	COG0438	transferase activity, transferring glycosyl groups
LIT28_24290	COG0521	Mo-molybdopterin cofactor biosynthetic process
LIT28_24340	COG5002	protein histidine kinase activity
LIT28_24345	COG4191	Histidine kinase
LIT28_24355	COG1368	sulfuric ester hydrolase activity
LIT28_24370	COG0715	COG0715 ABC-type nitrate sulfonate bicarbonate transport systems periplasmic components
LIT28_24375	COG1116	anion transmembrane transporter activity
LIT28_24380	COG0600	ABC-type nitrate sulfonate bicarbonate transport system permease component
LIT28_24400	COG0494	nUDIX hydrolase
LIT28_24430	COG1854	S-ribosylhomocysteine lyase activity
LIT28_24440	COG0288	reversible hydration of carbon dioxide
LIT28_24445	COG1271	oxidase subunit
LIT28_24450	COG1294	oxidase, subunit
LIT28_24480	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
LIT28_24505	COG1842	Phage shock protein A
LIT28_24530	COG3859	Proton-coupled thiamine transporter YuaJ
LIT28_24535	COG5002	protein histidine kinase activity
LIT28_24540	COG0745	RESPONSE REGULATOR receiver
LIT28_24565	COG0634	Belongs to the purine pyrimidine phosphoribosyltransferase family
LIT28_24570	COG1597	lipid kinase activity
LIT28_24580	COG0577	efflux transmembrane transporter activity
LIT28_24585	COG1136	(ABC) transporter
LIT28_24610	COG0586	Pfam SNARE associated Golgi protein
LIT28_24620	COG4977	sequence-specific DNA binding
LIT28_24630	COG0577	efflux transmembrane transporter activity
LIT28_24635	COG1136	(ABC) transporter
LIT28_24640	COG3708	Transcriptional regulator
LIT28_24640	COG2207	Transcriptional regulator
LIT28_24645	COG5658	integral membrane protein
LIT28_24650	COG0640	Transcriptional regulator
LIT28_24655	COG0745	RESPONSE REGULATOR receiver
LIT28_24660	COG2205	protein histidine kinase activity
LIT28_24665	COG0577	efflux transmembrane transporter activity
LIT28_24670	COG0577	efflux transmembrane transporter activity
LIT28_24675	COG1136	(ABC) transporter
LIT28_24680	COG0577	efflux transmembrane transporter activity
LIT28_24695	COG2188	Transcriptional regulator
LIT28_24715	COG3964	amidohydrolase
LIT28_24730	COG0745	RESPONSE REGULATOR receiver
LIT28_24735	COG4948	Mandelate Racemase Muconate Lactonizing
LIT28_24745	COG0447	Converts o-succinylbenzoyl-CoA (OSB-CoA) to 1,4- dihydroxy-2-naphthoyl-CoA (DHNA-CoA)
LIT28_24750	COG0596	Alpha beta hydrolase
LIT28_24760	COG1169	isochorismate synthase
LIT28_24765	COG1575	Belongs to the MenA family. Type 1 subfamily
LIT28_24770	COG1734	Transcription factor that acts by binding directly to the RNA polymerase (RNAP). Required for negative regulation of rRNA expression and positive regulation of several amino acid biosynthesis promoters
LIT28_24785	COG1959	2 iron, 2 sulfur cluster binding
LIT28_24805	COG0058	SHG alpha-glucan phosphorylase activity
LIT28_24815	COG0448	Catalyzes the synthesis of ADP-glucose, a sugar donor used in elongation reactions on alpha-glucans
LIT28_24835	COG1404	Belongs to the peptidase S8 family
LIT28_24850	COG1595	DNA-templated transcription, initiation
LIT28_24945	COG0544	peptidyl-prolyl cis-trans isomerase activity
LIT28_24980	COG1285	pathogenesis
LIT28_24985	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
LIT28_25000	COG2155	Conserved Protein
LIT28_25005	COG1098	S1 RNA binding domain
LIT28_25010	COG0436	Aminotransferase
LIT28_25015	COG1522	sequence-specific DNA binding
LIT28_25020	COG1052	Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family
LIT28_25025	COG2267	carboxylic ester hydrolase activity
LIT28_25035	COG1168	Bifunctional PLP-dependent enzyme with beta-cystaTHIonase and maltose regulon repressor activities
LIT28_25055	COG5018	Exonuclease
LIT28_25060	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
LIT28_25080	COG2050	protein possibly involved in aromatic compounds catabolism
LIT28_25090	COG1268	BioY protein
LIT28_25095	COG1210	Utp--glucose-1-phosphate uridylyltransferase
LIT28_25100	COG1109	Catalyzes the conversion of glucosamine-6-phosphate to glucosamine-1-phosphate
LIT28_25115	COG3584	3D domain protein
LIT28_25130	COG1252	NADH dehydrogenase
LIT28_25140	COG3708	Transcriptional regulator
LIT28_25155	COG1683	Conserved Protein
LIT28_25175	COG0316	Belongs to the HesB IscA family
LIT28_25190	COG1252	NADH dehydrogenase
LIT28_25200	COG2274	protein secretion by the type I secretion system
LIT28_25205	COG0390	transport system, permease component
LIT28_25210	COG2824	Alkylphosphonate utilization operon protein PhnA
LIT28_25230	COG4837	Protein of unknown function (DUF1462)
LIT28_25235	COG0694	Involved in iron-sulfur cluster biogenesis. Binds a 4Fe- 4S cluster, can transfer this cluster to apoproteins, and thereby intervenes in the maturation of Fe S proteins. Could also act as a scaffold chaperone for damaged Fe S proteins
LIT28_25245	COG2334	A protein kinase that phosphorylates Ser and Thr residues. Probably acts to suppress the effects of stress linked to accumulation of reactive oxygen species. Probably involved in the extracytoplasmic stress response
LIT28_25250	COG1267	Lipid phosphatase which dephosphorylates phosphatidylglycerophosphate (PGP) to phosphatidylglycerol (PG)
LIT28_25265	COG0577	efflux transmembrane transporter activity
LIT28_25265	COG1136	(ABC) transporter
LIT28_25270	COG2249	NAD(P)H dehydrogenase (quinone) activity
LIT28_25280	COG0647	UMP catabolic process
LIT28_25290	COG2445	Protein of unknown function DUF86
LIT28_25295	COG1494	fructose-1,6-bisphosphatase
LIT28_25310	COG4470	Protein conserved in bacteria
LIT28_25325	COG2801	Transposase and inactivated derivatives
LIT28_25330	COG0789	Transcriptional regulator
LIT28_25335	COG4377	Putative membrane peptidase family (DUF2324)
LIT28_25360	COG0739	heme binding
LIT28_25370	COG3377	Domain of unknown function (DUF1805)
LIT28_25375	COG0737	Belongs to the 5'-nucleotidase family
LIT28_25380	COG1695	Transcriptional regulator
LIT28_25390	COG0719	Fe-S assembly protein
LIT28_25395	COG0822	iron-sulfur transferase activity
LIT28_25400	COG0520	Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L- selenocystine to produce L-alanine
LIT28_25405	COG0719	Fe-S assembly protein
LIT28_25410	COG0396	ATPase activity
LIT28_25415	COG1464	Belongs to the NlpA lipoprotein family
LIT28_25420	COG1464	Belongs to the NlpA lipoprotein family
LIT28_25425	COG2011	ABC-type metal ion transport system permease component
LIT28_25440	COG0526	COG0526, thiol-disulfide isomerase and thioredoxins
LIT28_25445	COG1658	Required for correct processing of both the 5' and 3' ends of 5S rRNA precursor. Cleaves both sides of a double-stranded region yielding mature 5S rRNA in one step
LIT28_25460	COG1393	Belongs to the ArsC family
LIT28_25505	COG0039	L-malate dehydrogenase activity
LIT28_25520	COG1309	transcriptional regulator
LIT28_25525	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LIT28_25530	COG1960	acyl-CoA dehydrogenase activity
LIT28_25535	COG0183	Belongs to the thiolase family
LIT28_25540	COG1024	Enoyl-CoA hydratase
LIT28_25540	COG1250	3-hydroxyacyl-CoA dehydrogenase
LIT28_25550	COG1686	Belongs to the peptidase S11 family
LIT28_25565	COG0011	TIGRFAM Protein of
LIT28_25570	COG0840	transmembrane signaling receptor activity
LIT28_25590	COG2814	Major facilitator Superfamily
LIT28_25595	COG0531	amino acid
LIT28_25615	COG1284	Uncharacterised 5xTM membrane BCR, YitT family COG1284
LIT28_25650	COG0586	Pfam SNARE associated Golgi protein
LIT28_25660	COG1376	ErfK ybiS ycfS ynhG family protein
LIT28_25665	COG0745	RESPONSE REGULATOR receiver
LIT28_25670	COG5002	protein histidine kinase activity
LIT28_25695	COG0840	transmembrane signaling receptor activity
LIT28_25700	COG2151	metal-sulfur cluster biosynthetic enzyme
LIT28_25705	COG3227	Zinc metalloprotease (Elastase)
LIT28_25725	COG0475	glutathione-regulated potassium exporter activity
LIT28_25730	COG0490	domain, Protein
LIT28_25735	COG1115	amino acid carrier protein
LIT28_25740	COG0783	Belongs to the Dps family
LIT28_25755	COG1611	Belongs to the LOG family
LIT28_25775	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
LIT28_25780	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
LIT28_25785	COG1115	amino acid carrier protein
LIT28_25790	COG1115	amino acid carrier protein
LIT28_25795	COG2910	NAD(P)H-binding
LIT28_25810	COG0656	L-ascorbic acid biosynthetic process
LIT28_25815	COG2814	Major facilitator Superfamily
LIT28_25820	COG1733	regulation of RNA biosynthetic process
LIT28_25830	COG1252	NADH dehydrogenase
LIT28_25835	COG0162	Catalyzes the attachment of tyrosine to tRNA(Tyr) in a two-step reaction tyrosine is first activated by ATP to form Tyr- AMP and then transferred to the acceptor end of tRNA(Tyr)
LIT28_25840	COG0812	UDP-N-acetylmuramate dehydrogenase activity
LIT28_25880	COG1670	COG1670 acetyltransferases, including N-acetylases of ribosomal proteins
LIT28_25940	COG0557	exoribonuclease II activity
LIT28_25945	COG1647	Serine aminopeptidase, S33
LIT28_25950	COG1314	P-P-bond-hydrolysis-driven protein transmembrane transporter activity
LIT28_25955	COG1346	cytolysis
LIT28_25990	COG0057	glyceraldehyde-3-phosphate dehydrogenase (NAD+) (phosphorylating) activity
LIT28_26005	COG1508	bacterial-type RNA polymerase transcriptional activator activity, sequence-specific DNA binding
LIT28_26030	COG0332	Catalyzes the condensation reaction of fatty acid synthesis by the addition to an acyl acceptor of two carbons from malonyl-ACP. Catalyzes the first condensation reaction which initiates fatty acid synthesis and may therefore play a role in governing the total rate of fatty acid production. Possesses both acetoacetyl-ACP synthase and acetyl transacylase activities. Its substrate specificity determines the biosynthesis of branched- chain and or straight-chain of fatty acids
LIT28_26045	COG2323	membrane
LIT28_26055	COG1925	phosphoenolpyruvate-dependent sugar phosphotransferase system
LIT28_26065	COG0391	Required for morphogenesis under gluconeogenic growth conditions
LIT28_26075	COG1051	belongs to the nudix hydrolase family
LIT28_26085	COG0492	ferredoxin-NADP+ reductase activity
LIT28_26090	COG0457	Tetratricopeptide repeat
LIT28_26095	COG0110	maltose O-acetyltransferase activity
LIT28_26115	COG1950	PFAM Membrane protein of
LIT28_26125	COG0178	The UvrABC repair system catalyzes the recognition and processing of DNA lesions. UvrA is an ATPase and a DNA-binding protein. A damage recognition complex composed of 2 uvrA and 2 uvrB subunits scans DNA for abnormalities. When the presence of a lesion has been verified by uvrB, the uvrA molecules dissociate
LIT28_26130	COG0556	nucleotide-excision repair
LIT28_26145	COG0789	Transcriptional regulator
LIT28_26175	COG0583	DNA-binding transcription factor activity
LIT28_26185	COG0655	NAD(P)H dehydrogenase (quinone) activity
LIT28_26190	COG0488	(ABC) transporter
LIT28_26200	COG1132	(ABC) transporter
LIT28_26205	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LIT28_26210	COG0793	Belongs to the peptidase S41A family
LIT28_26210	COG3409	Peptidoglycan-binding domain 1 protein
LIT28_26215	COG2177	Part of the ABC transporter FtsEX involved in
LIT28_26220	COG2884	Cell division ATP-binding protein ftsE
LIT28_26240	COG1544	Required for dimerization of active 70S ribosomes into 100S ribosomes in stationary phase
LIT28_26245	COG1278	Cold shock
LIT28_26250	COG1040	competence protein
LIT28_26255	COG4098	Superfamily II DNA RNA helicase required for DNA uptake (late competence protein)
LIT28_26260	COG0791	NLP P60 protein
LIT28_26260	COG1388	LysM domain
LIT28_26265	COG1733	regulation of RNA biosynthetic process
LIT28_26270	COG1307	EDD domain protein, DegV family
LIT28_26275	COG1739	Uncharacterized protein family UPF0029
LIT28_26280	COG1316	TRANSCRIPTIONal
LIT28_26285	COG0381	UDP-N-acetylglucosamine 2-epimerase activity
LIT28_26290	COG1004	Belongs to the UDP-glucose GDP-mannose dehydrogenase family
LIT28_26295	COG0472	First step of the lipid cycle reactions in the biosynthesis of the cell wall peptidoglycan
LIT28_26305	COG3933	PFAM sigma-54 factor interaction domain-containing protein
LIT28_26305	COG1221	Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain
LIT28_26325	COG1486	melibiose metabolic process
LIT28_26330	COG1447	Phosphotransferase system cellobiose-specific component IIA
LIT28_26335	COG1455	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
LIT28_26345	COG4262	Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy- AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine
LIT28_26355	COG1447	Phosphotransferase system cellobiose-specific component IIA
LIT28_26365	COG1440	protein-N(PI)-phosphohistidine-lactose phosphotransferase system transporter activity
LIT28_26370	COG1301	dicarboxylic acid transport
LIT28_26380	COG0346	lactoylglutathione lyase activity
LIT28_26385	COG1511	domain protein
LIT28_26390	COG0583	DNA-binding transcription factor activity
LIT28_26395	COG3405	Belongs to the glycosyl hydrolase 8 (cellulase D) family
LIT28_26405	COG1271	oxidase subunit
LIT28_26410	COG1294	oxidase, subunit
LIT28_26415	COG1055	Involved in arsenical resistance. Thought to form the channel of an arsenite pump
LIT28_26425	COG1620	l-lactate permease
LIT28_26435	COG2389	metal-binding protein
LIT28_26445	COG1368	sulfuric ester hydrolase activity
LIT28_26450	COG2801	Transposase and inactivated derivatives
LIT28_26465	COG1388	LysM domain
LIT28_26465	COG0791	NLP P60 protein
LIT28_26470	COG1972	Belongs to the concentrative nucleoside transporter (CNT) (TC 2.A.41) family
LIT28_26480	COG1215	transferase activity, transferring glycosyl groups
LIT28_26485	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
LIT28_26490	COG3584	3D domain protein
LIT28_26490	COG1388	LysM domain
LIT28_26515	COG4715	Zinc finger, swim domain protein
LIT28_26520	COG0553	Transcription regulator that activates transcription by stimulating RNA polymerase (RNAP) recycling in case of stress conditions such as supercoiled DNA or high salt concentrations. Probably acts by releasing the RNAP, when it is trapped or immobilized on tightly supercoiled DNA. Does not activate transcription on linear DNA. Probably not involved in DNA repair
LIT28_26560	COG0577	efflux transmembrane transporter activity
LIT28_26565	COG1136	(ABC) transporter
LIT28_26590	COG5002	protein histidine kinase activity
LIT28_26595	COG0745	RESPONSE REGULATOR receiver
LIT28_26600	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
LIT28_26620	COG1210	Utp--glucose-1-phosphate uridylyltransferase
LIT28_26630	COG2801	Transposase and inactivated derivatives
LIT28_26635	COG0438	transferase activity, transferring glycosyl groups
LIT28_26640	COG1215	transferase activity, transferring glycosyl groups
LIT28_26640	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
LIT28_26650	COG1134	teichoic acid transport
LIT28_26655	COG1682	transport, permease protein
LIT28_26660	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
LIT28_26665	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
LIT28_26670	COG0615	ADP-L-glycero-beta-D-manno-heptose biosynthetic process
LIT28_26680	COG1609	Transcriptional regulator
LIT28_26685	COG0726	polysaccharide deacetylase
LIT28_26695	COG0739	heme binding
LIT28_26710	COG3279	Response regulator of the LytR AlgR family
LIT28_26720	COG2385	sporulation resulting in formation of a cellular spore
LIT28_26735	COG4836	Membrane
LIT28_26740	COG1007	ATP synthesis coupled electron transport
LIT28_26745	COG1008	NDH-1 shuttles electrons from NAD(P)H, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be plastoquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LIT28_26750	COG1009	NADH ubiquinone oxidoreductase subunit 5 chain L Multisubunit Na H antiporter, MnhA subunit
LIT28_26760	COG0839	Belongs to the complex I subunit 6 family
LIT28_26780	COG0852	NDH-1 shuttles electrons from NADH, via FMN and iron- sulfur (Fe-S) centers, to quinones in the respiratory chain. The immediate electron acceptor for the enzyme in this species is believed to be ubiquinone. Couples the redox reaction to proton translocation (for every two electrons transferred, four hydrogen ions are translocated across the cytoplasmic membrane), and thus conserves the redox energy in a proton gradient
LIT28_26795	COG3300	MHYT domain
LIT28_26795	COG5001	Diguanylate cyclase
LIT28_26845	COG0356	it plays a direct role in the translocation of protons across the membrane
LIT28_26880	COG0698	ribose 5-phosphate isomerase
LIT28_26890	COG2190	(PTS) system
LIT28_26895	COG2259	Doxx family
LIT28_26900	COG1853	conserved protein domain typically associated with flavoprotein oxygenases, DIM6 NTAB family
LIT28_26915	COG0009	L-threonylcarbamoyladenylate synthase
LIT28_26930	COG2890	protein-(glutamine-N5) methyltransferase activity
LIT28_26935	COG0216	Peptide chain release factor 1 directs the termination of translation in response to the peptide chain termination codons UAG and UAA
LIT28_26950	COG1158	Facilitates transcription termination by a mechanism that involves Rho binding to the nascent RNA, activation of Rho's RNA-dependent ATPase activity, and release of the mRNA from the DNA template
LIT28_26955	COG1494	fructose-1,6-bisphosphatase
LIT28_26975	COG4821	SIS domain
LIT28_26985	COG3343	RNA polymerase activity
LIT28_26995	COG1960	acyl-CoA dehydrogenase activity
LIT28_27000	COG1960	acyl-CoA dehydrogenase activity
LIT28_27005	COG1250	3-hydroxyacyl-CoA dehydrogenase
LIT28_27015	COG0247	lactate metabolic process
LIT28_27015	COG2181	nitrate reductase activity
LIT28_27020	COG1502	Catalyzes the reversible phosphatidyl group transfer from one phosphatidylglycerol molecule to another to form cardiolipin (CL) (diphosphatidylglycerol) and glycerol
LIT28_27030	COG3300	MHYT domain
LIT28_27030	COG5001	Diguanylate cyclase
LIT28_27050	COG2197	response regulator
LIT28_27055	COG4585	Histidine kinase
LIT28_27060	COG0842	Transport permease protein
LIT28_27065	COG1131	(ABC) transporter
LIT28_27070	COG0024	Methionine aminopeptidase
LIT28_27080	COG2234	aminopeptidase activity
LIT28_27100	COG1595	DNA-templated transcription, initiation
LIT28_27110	COG4506	Protein conserved in bacteria
LIT28_27115	COG1619	proteins homologs of microcin C7 resistance protein MccF
LIT28_27140	COG2814	Major facilitator Superfamily
LIT28_27145	COG0789	Transcriptional regulator
LIT28_27150	COG0584	glycerophosphoryl diester phosphodiesterase
LIT28_27155	COG0744	Peptidoglycan polymerase that catalyzes glycan chain elongation from lipid-linked precursors
LIT28_27165	COG1994	Peptidase M50
LIT28_27175	COG1078	dGTPase activity
LIT28_27180	COG0614	abc-type fe3 -hydroxamate transport system, periplasmic component
LIT28_27185	COG1120	ATPase activity
LIT28_27190	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LIT28_27195	COG0609	Belongs to the binding-protein-dependent transport system permease family. FecCD subfamily
LIT28_27215	COG0280	phosphate acetyltransferase
LIT28_27230	COG3773	Cell wall hydrolase
LIT28_27240	COG2363	Small membrane protein
LIT28_27250	COG1226	(belongs to the monovalent cation proton antiporter 2 (CPA2) transporter (TC 2.A.37) family)
LIT28_27255	COG2233	PERMEase
LIT28_27260	COG0561	phosphatase activity
LIT28_27265	COG2814	Major facilitator Superfamily
LIT28_27275	COG1277	ABC-type transport system involved in multi-copper enzyme maturation permease component
LIT28_27280	COG1131	(ABC) transporter
LIT28_27285	COG2755	lipolytic protein G-D-S-L family
LIT28_27290	COG1609	Transcriptional regulator
LIT28_27300	COG0460	homoserine dehydrogenase
LIT28_27310	COG2873	o-acetylhomoserine
LIT28_27320	COG1011	Hydrolase
LIT28_27325	COG0664	- Catabolite gene activator and regulatory subunit of cAMP-dependent protein
LIT28_27335	COG2197	response regulator
LIT28_27340	COG2203	Gaf domain
LIT28_27340	COG4585	Histidine kinase
LIT28_27345	COG0351	phosphomethylpyrimidine kinase
LIT28_27350	COG3706	GGDEF domain
LIT28_27355	COG2879	small protein
LIT28_27360	COG1966	Carbon starvation protein
LIT28_27365	COG3279	Response regulator of the LytR AlgR family
LIT28_27370	COG0477	Major facilitator Superfamily
LIT28_27395	COG0840	transmembrane signaling receptor activity
LIT28_27405	COG1607	acyl-coa hydrolase
LIT28_27420	COG0488	(ABC) transporter
LIT28_27435	COG0463	Glycosyl transferase, family 2
LIT28_27440	COG1309	transcriptional regulator
LIT28_27445	COG0841	Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family
LIT28_27450	COG0229	Has an important function as a repair enzyme for proteins that have been inactivated by oxidation. Catalyzes the reversible oxidation-reduction of methionine sulfoxide in proteins to methionine
LIT28_27460	COG0628	permease
LIT28_27475	COG3279	Response regulator of the LytR AlgR family
LIT28_27480	COG3275	phosphorelay sensor kinase activity
LIT28_27485	COG2814	Major facilitator Superfamily
LIT28_27490	COG1292	Belongs to the BCCT transporter (TC 2.A.15) family
LIT28_27495	COG4362	Belongs to the NOS family. Bacterial NOS oxygenase subfamily
LIT28_27520	COG1087	Belongs to the NAD(P)-dependent epimerase dehydratase family
LIT28_27525	COG1272	protein, Hemolysin III
LIT28_27550	COG1164	Oligoendopeptidase f
LIT28_27570	COG0265	Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain
LIT28_27575	COG1235	May be involved in the transport of PQQ or its precursor to the periplasm
LIT28_27580	COG4853	Protein conserved in bacteria
LIT28_27585	COG4863	YycH protein
LIT28_27590	COG5002	protein histidine kinase activity
LIT28_27595	COG0745	RESPONSE REGULATOR receiver
LIT28_27625	COG0305	Participates in initiation and elongation during chromosome replication
LIT28_27635	COG3887	signaling protein consisting of a modified GGDEF domain and a DHH domain
LIT28_27640	COG4241	membrane
LIT28_27650	COG0629	single-stranded DNA binding
LIT28_27660	COG0012	GTP binding
LIT28_27665	COG4481	Protein conserved in bacteria
LIT28_27670	COG0668	transmembrane transport
LIT28_27680	COG1475	DNA binding
LIT28_27685	COG1192	Involved in chromosome partitioning
LIT28_27710	COG1847	R3H domain protein
LIT28_27715	COG0706	membrane insertase activity
LIT28_27725	COG0230	Belongs to the bacterial ribosomal protein bL34 family
LIT28_27800	COG1780	Probably involved in ribonucleotide reductase function
LIT28_27880	COG0789	Transcriptional regulator
LIT28_27900	COG0109	protoheme IX farnesyltransferase activity
LIT28_27965	COG1484	DNA-dependent DNA replication
LIT28_28000	COG0756	dUTP diphosphatase activity
LIT28_28120	COG0745	RESPONSE REGULATOR receiver
LIT28_28125	COG2205	protein histidine kinase activity
LIT28_28150	COG0156	8-amino-7-oxononanoate synthase activity
LIT28_28160	COG1760	l-serine dehydratase
LIT28_28170	COG4974	Belongs to the 'phage' integrase family
LIT28_28210	COG0583	DNA-binding transcription factor activity
LIT28_28215	COG2814	Major facilitator Superfamily
LIT28_28230	COG1309	transcriptional regulator
LIT28_28235	COG2814	Major facilitator Superfamily
LIT28_28275	COG0582	viral genome integration into host DNA
LIT28_28335	COG0621	Catalyzes the methylthiolation of N6- (dimethylallyl)adenosine (i(6)A), leading to the formation of 2- methylthio-N6-(dimethylallyl)adenosine (ms(2)i(6)A) at position 37 in tRNAs that read codons beginning with uridine
LIT28_28355	COG0312	modulator of DNA gyrase
LIT28_28395	COG0745	RESPONSE REGULATOR receiver
LIT28_28480	COG0723	plastoquinol--plastocyanin reductase activity
LIT28_28480	COG0665	tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity
LIT28_28510	COG4990	cell redox homeostasis
LIT28_28515	COG2267	carboxylic ester hydrolase activity
LIT28_28540	COG2046	Belongs to the sulfate adenylyltransferase family
LIT28_28550	COG3443	Belongs to the bacterial solute-binding protein 9 family
LIT28_28555	COG2239	Acts as a magnesium transporter
LIT28_28565	COG4974	Belongs to the 'phage' integrase family
LIT28_28590	COG2896	Catalyzes the cyclization of GTP to (8S)-3',8-cyclo-7,8- dihydroguanosine 5'-triphosphate
LIT28_28605	COG1131	(ABC) transporter
LIT28_28615	COG1636	Catalyzes the conversion of epoxyqueuosine (oQ) to queuosine (Q), which is a hypermodified base found in the wobble positions of tRNA(Asp), tRNA(Asn), tRNA(His) and tRNA(Tyr)
LIT28_28655	COG1876	peptidase activity
LIT28_28680	COG4166	transmembrane transport
LIT28_28690	COG3227	Zinc metalloprotease (Elastase)
LIT28_28735	COG2814	Major facilitator Superfamily
LIT28_28760	COG1819	glycosyl
LIT28_28780	COG1923	regulation of RNA biosynthetic process
LIT28_28790	COG1802	Transcriptional regulator
LIT28_28795	COG0697	spore germination
LIT28_28820	COG1329	Transcriptional regulator
LIT28_28840	COG1278	Cold shock
LIT28_28880	COG1404	Belongs to the peptidase S8 family
LIT28_28915	COG0457	Tetratricopeptide repeat
LIT28_28930	COG3718	enzyme involved in inositol metabolism
LIT28_28960	COG0673	inositol 2-dehydrogenase activity
LIT28_28965	COG2814	Major facilitator Superfamily
LIT28_28970	COG1609	Transcriptional regulator
LIT28_29000	COG2003	Belongs to the UPF0758 family
LIT28_29075	COG1401	restriction endodeoxyribonuclease activity
LIT28_29100	COG5632	N-Acetylmuramoyl-L-alanine amidase
LIT28_29225	COG0338	D12 class N6 adenine-specific DNA methyltransferase
LIT28_29295	COG1974	Represses a number of genes involved in the response to DNA damage (SOS response), including recA and lexA. In the presence of single-stranded DNA, RecA interacts with LexA causing an autocatalytic cleavage which disrupts the DNA-binding part of LexA, leading to derepression of the SOS regulon and eventually DNA repair
LIT28_29320	COG0491	Thiolesterase that catalyzes the hydrolysis of S-D- lactoyl-glutathione to form glutathione and D-lactic acid
LIT28_29335	COG2755	lipolytic protein G-D-S-L family
LIT28_29335	COG1835	transferase activity, transferring acyl groups other than amino-acyl groups
LIT28_29365	COG3773	Cell wall hydrolase
LIT28_29375	COG0457	Tetratricopeptide repeat
LIT28_29420	COG0654	COG0654 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases
LIT28_29440	COG2084	Dehydrogenase
LIT28_29490	COG4641	Protein conserved in bacteria
LIT28_29495	COG2089	acid synthase
LIT28_29510	COG1212	Activates KDO (a required 8-carbon sugar) for incorporation into bacterial lipopolysaccharide in Gram-negative bacteria
LIT28_29515	COG0399	UDP-4-amino-4-deoxy-L-arabinose aminotransferase
LIT28_29520	COG1088	dTDP-glucose 4,6-dehydratase activity
LIT28_29535	COG0463	Glycosyl transferase, family 2
LIT28_29540	COG0463	Glycosyl transferase, family 2
LIT28_29550	COG1028	Short-chain dehydrogenase reductase Sdr
LIT28_29560	COG2089	acid synthase
LIT28_29565	COG1028	Short-chain dehydrogenase reductase Sdr
LIT28_29575	COG1887	Glycosyl glycerophosphate transferases involved in teichoic acid biosynthesis TagF TagB EpsJ RodC
LIT28_29580	COG3391	amine dehydrogenase activity
LIT28_29600	COG2373	Large extracellular alpha-helical protein
LIT28_29610	COG3397	chitin binding
LIT28_29700	COG0741	lytic transglycosylase activity
LIT28_29700	COG0791	NLP P60 protein
LIT28_29705	COG3344	reverse transcriptase
LIT28_29750	COG0362	Catalyzes the oxidative decarboxylation of 6- phosphogluconate to ribulose 5-phosphate and CO(2), with concomitant reduction of NADP to NADPH
LIT28_29780	COG0596	Alpha beta hydrolase
LIT28_29845	COG0568	sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released
LIT28_29870	COG3620	sequence-specific DNA binding
LIT28_29885	COG0582	viral genome integration into host DNA
LIT28_29895	COG1192	Involved in chromosome partitioning
LIT28_29910	COG1136	(ABC) transporter