locus-tag class description CUC43_00020 PF01327 Polypeptide deformylase CUC43_00035 PF01192 RNA polymerase Rpb6 CUC43_00040 PF00625 Guanylate kinase CUC43_00045 PF04025 Domain of unknown function (DUF370) CUC43_00050 PF08340 Domain of unknown function (DUF1732) CUC43_00050 PF03755 YicC-like family, N-terminal region CUC43_00055 PF00689 Cation transporting ATPase, C-terminus CUC43_00055 PF00690 Cation transporter/ATPase, N-terminus CUC43_00070 PF01321 Creatinase/Prolidase N-terminal domain CUC43_00070 PF00557 Metallopeptidase family M24 CUC43_00105 PF13419 Haloacid dehalogenase-like hydrolase CUC43_00110 PF00156 Phosphoribosyl transferase domain CUC43_00115 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family CUC43_00120 PF01180 Dihydroorotate dehydrogenase CUC43_00125 PF00175 Oxidoreductase NAD-binding domain CUC43_00125 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B CUC43_00130 PF02142 MGS-like domain CUC43_00130 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain CUC43_00130 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CUC43_00135 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain CUC43_00135 PF00117 Glutamine amidotransferase class-I CUC43_00140 PF01979 Amidohydrolase family CUC43_00145 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CUC43_00145 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CUC43_00150 PF00860 Permease family CUC43_00155 PF00156 Phosphoribosyl transferase domain CUC43_00160 PF00849 RNA pseudouridylate synthase CUC43_00160 PF01479 S4 domain CUC43_00165 PF01252 Signal peptidase (SPase) II CUC43_00175 PF00133 tRNA synthetases class I (I, L, M and V) CUC43_00175 PF06827 Zinc finger found in FPG and IleRS CUC43_00175 PF08264 Anticodon-binding domain of tRNA CUC43_00180 PF05103 DivIVA protein CUC43_00185 PF17774 Putative RNA-binding domain in YlmH CUC43_00185 PF01479 S4 domain CUC43_00190 PF02325 YGGT family CUC43_00195 PF04472 Cell division protein SepF CUC43_00200 PF01168 Alanine racemase, N-terminal domain CUC43_00210 PF05239 PRC-barrel domain CUC43_00215 PF04539 Sigma-70 region 3 CUC43_00215 PF04545 Sigma-70, region 4 CUC43_00215 PF04542 Sigma-70 region 2 CUC43_00220 PF04545 Sigma-70, region 4 CUC43_00220 PF04542 Sigma-70 region 2 CUC43_00225 PF03419 Sporulation factor SpoIIGA CUC43_00230 PF00091 Tubulin/FtsZ family, GTPase domain CUC43_00230 PF12327 FtsZ family, C-terminal domain CUC43_00235 PF02491 SHS2 domain inserted in FTSA CUC43_00240 PF03799 Cell division protein FtsQ CUC43_00240 PF08478 POTRA domain, FtsQ-type CUC43_00245 PF01565 FAD binding domain CUC43_00245 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CUC43_00250 PF04101 Glycosyltransferase family 28 C-terminal domain CUC43_00250 PF03033 Glycosyltransferase family 28 N-terminal domain CUC43_00255 PF01098 Cell cycle protein CUC43_00260 PF02875 Mur ligase family, glutamate ligase domain CUC43_00260 PF08245 Mur ligase middle domain CUC43_00265 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 CUC43_00265 PF00953 Glycosyl transferase family 4 CUC43_00270 PF01225 Mur ligase family, catalytic domain CUC43_00270 PF02875 Mur ligase family, glutamate ligase domain CUC43_00270 PF08245 Mur ligase middle domain CUC43_00275 PF03793 PASTA domain CUC43_00275 PF03717 Penicillin-binding Protein dimerisation domain CUC43_00275 PF00905 Penicillin binding protein transpeptidase domain CUC43_00285 PF04977 Septum formation initiator CUC43_00290 PF01795 MraW methylase family CUC43_00295 PF10079 Bacillithiol biosynthesis BshC CUC43_00300 PF02558 Ketopantoate reductase PanE/ApbA CUC43_00300 PF08546 Ketopantoate reductase PanE/ApbA C terminal CUC43_00305 PF00583 Acetyltransferase (GNAT) family CUC43_00315 PF01783 Ribosomal L32p protein family CUC43_00320 PF02620 Large ribosomal RNA subunit accumulation protein YceD CUC43_00435 PF00574 Clp protease CUC43_00445 PF03354 Phage Terminase CUC43_00485 PF00589 Phage integrase family CUC43_00505 PF01548 Transposase CUC43_00505 PF02371 Transposase IS116/IS110/IS902 family CUC43_00585 PF18277 AbrB C-terminal domain CUC43_00585 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CUC43_00595 PF01695 IstB-like ATP binding protein CUC43_00625 PF01381 Helix-turn-helix CUC43_00640 PF01381 Helix-turn-helix CUC43_00660 PF00589 Phage integrase family CUC43_00660 PF14659 Phage integrase, N-terminal SAM-like domain CUC43_00665 PF05636 HIGH Nucleotidyl Transferase CUC43_00670 PF05362 Lon protease (S16) C-terminal proteolytic domain CUC43_00670 PF13180 PDZ domain CUC43_00680 PF07670 Nucleoside recognition CUC43_00685 PF01467 Cytidylyltransferase-like CUC43_00705 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) CUC43_00710 PF06133 Control of competence regulator ComK, YlbF/YmcA CUC43_00715 PF00300 Histidine phosphatase superfamily (branch 1) CUC43_00720 PF14003 YlbE-like protein CUC43_00725 PF14071 Putative coat protein CUC43_00730 PF14504 CAP-associated N-terminal CUC43_00730 PF00188 Cysteine-rich secretory protein family CUC43_00735 PF08868 YugN-like family CUC43_00740 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) CUC43_00745 PF03626 Prokaryotic Cytochrome C oxidase subunit IV CUC43_00750 PF00510 Cytochrome c oxidase subunit III CUC43_00755 PF00115 Cytochrome C and Quinol oxidase polypeptide I CUC43_00760 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CUC43_00760 PF00116 Cytochrome C oxidase subunit II, periplasmic domain CUC43_00760 PF00034 Cytochrome c CUC43_00765 PF01040 UbiA prenyltransferase family CUC43_00770 PF02628 Cytochrome oxidase assembly protein CUC43_00775 PF02785 Biotin carboxylase C-terminal domain CUC43_00775 PF00289 Biotin carboxylase, N-terminal domain CUC43_00775 PF02436 Conserved carboxylase domain CUC43_00775 PF00364 Biotin-requiring enzyme CUC43_00775 PF00682 HMGL-like CUC43_00775 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CUC43_00785 PF01098 Cell cycle protein CUC43_00790 PF07408 Protein of unknown function (DUF1507) CUC43_00800 PF02562 PhoH-like protein CUC43_00800 PF13638 PIN domain CUC43_00810 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) CUC43_00820 PF14036 YlaH-like protein CUC43_00835 PF00459 Inositol monophosphatase family CUC43_00845 PF06335 Protein of unknown function (DUF1054) CUC43_00850 PF05256 Uncharacterised protein family (UPF0223) CUC43_00855 PF01276 Orn/Lys/Arg decarboxylase, major domain CUC43_00855 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CUC43_00895 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CUC43_00895 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC43_00900 PF02817 e3 binding domain CUC43_00900 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CUC43_00900 PF00364 Biotin-requiring enzyme CUC43_00905 PF02780 Transketolase, C-terminal domain CUC43_00905 PF02779 Transketolase, pyrimidine binding domain CUC43_00910 PF00676 Dehydrogenase E1 component CUC43_00920 PF01327 Polypeptide deformylase CUC43_00940 PF17770 Ribonuclease J C-terminal domain CUC43_00940 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CUC43_00940 PF00753 Metallo-beta-lactamase superfamily CUC43_00945 PF02080 TrkA-C domain CUC43_00945 PF02254 TrkA-N domain CUC43_00955 PF07687 Peptidase dimerisation domain CUC43_00955 PF01546 Peptidase family M20/M25/M40 CUC43_00960 PF08503 Tetrahydrodipicolinate succinyltransferase N-terminal CUC43_00960 PF00132 Bacterial transferase hexapeptide (six repeats) CUC43_00960 PF14602 Hexapeptide repeat of succinyl-transferase CUC43_00965 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC43_00965 PF03466 LysR substrate binding domain CUC43_00980 PF04308 Ribonuclease H-like CUC43_00990 PF08796 Protein of unknown function (DUF1797) CUC43_01005 PF10388 EAL-domain associated signalling protein domain CUC43_01005 PF00563 EAL domain CUC43_01015 PF10518 TAT (twin-arginine translocation) pathway signal sequence CUC43_01015 PF00149 Calcineurin-like phosphoesterase CUC43_01030 PF13089 Polyphosphate kinase N-terminal domain CUC43_01030 PF17941 Polyphosphate kinase C-terminal domain 1 CUC43_01030 PF02503 Polyphosphate kinase middle domain CUC43_01030 PF13090 Polyphosphate kinase C-terminal domain 2 CUC43_01035 PF02541 Ppx/GppA phosphatase family CUC43_01040 PF14177 YkyB-like protein CUC43_01070 PF07690 Major Facilitator Superfamily CUC43_01080 PF01717 Cobalamin-independent synthase, Catalytic domain CUC43_01080 PF08267 Cobalamin-independent synthase, N-terminal domain CUC43_01090 PF14040 Deoxyribonuclease NucA/NucB CUC43_01105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_01105 PF00512 His Kinase A (phospho-acceptor) domain CUC43_01115 PF00155 Aminotransferase class I and II CUC43_01120 PF00356 Bacterial regulatory proteins, lacI family CUC43_01120 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CUC43_01125 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_01130 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_01135 PF13416 Bacterial extracellular solute-binding protein CUC43_01140 PF16657 Maltogenic Amylase, C-terminal domain CUC43_01140 PF02903 Alpha amylase, N-terminal ig-like domain CUC43_01140 PF00128 Alpha amylase, catalytic domain CUC43_01145 PF00128 Alpha amylase, catalytic domain CUC43_01145 PF16657 Maltogenic Amylase, C-terminal domain CUC43_01150 PF17912 MalK OB fold domain CUC43_01150 PF03459 TOBE domain CUC43_01150 PF00005 ABC transporter CUC43_01190 PF02463 RecF/RecN/SMC N terminal domain CUC43_01195 PF02803 Thiolase, C-terminal domain CUC43_01195 PF00108 Thiolase, N-terminal domain CUC43_01200 PF00293 NUDIX domain CUC43_01230 PF03551 Transcriptional regulator PadR-like family CUC43_01250 PF01636 Phosphotransferase enzyme family CUC43_01255 PF00795 Carbon-nitrogen hydrolase CUC43_01260 PF00155 Aminotransferase class I and II CUC43_01265 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain CUC43_01265 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain CUC43_01275 PF00596 Class II Aldolase and Adducin N-terminal domain CUC43_01280 PF03079 ARD/ARD' family CUC43_01295 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CUC43_01295 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CUC43_01305 PF00990 Diguanylate cyclase, GGDEF domain CUC43_01310 PF00881 Nitroreductase family CUC43_01325 PF00391 PEP-utilising enzyme, mobile domain CUC43_01325 PF05524 PEP-utilising enzyme, N-terminal CUC43_01325 PF02896 PEP-utilising enzyme, TIM barrel domain CUC43_01330 PF00381 PTS HPr component phosphorylation site CUC43_01335 PF00367 phosphotransferase system, EIIB CUC43_01335 PF02378 Phosphotransferase system, EIIC CUC43_01335 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CUC43_01340 PF03123 CAT RNA binding domain CUC43_01340 PF00874 PRD domain CUC43_01355 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase CUC43_01360 PF01979 Amidohydrolase family CUC43_01370 PF04079 Segregation and condensation complex subunit ScpB CUC43_01380 PF02616 Segregation and condensation protein ScpA CUC43_01390 PF03745 Domain of unknown function (DUF309) CUC43_01395 PF00583 Acetyltransferase (GNAT) family CUC43_01405 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD CUC43_01410 PF06207 Protein of unknown function (DUF1002) CUC43_01420 PF03323 Bacillus/Clostridium GerA spore germination protein CUC43_01425 PF14097 Stage V sporulation protein AE1 CUC43_01430 PF03862 SpoVAC/SpoVAEB sporulation membrane protein CUC43_01435 PF07451 Stage V sporulation protein AD (SpoVAD) CUC43_01440 PF03862 SpoVAC/SpoVAEB sporulation membrane protein CUC43_01445 PF13782 Stage V sporulation protein AB CUC43_01450 PF12164 Stage V sporulation protein AA CUC43_01460 PF00209 Sodium:neurotransmitter symporter family CUC43_01465 PF04542 Sigma-70 region 2 CUC43_01465 PF04545 Sigma-70, region 4 CUC43_01465 PF04539 Sigma-70 region 3 CUC43_01470 PF13581 Histidine kinase-like ATPase domain CUC43_01475 PF01740 STAS domain CUC43_01480 PF07943 Penicillin-binding protein 5, C-terminal domain CUC43_01480 PF00768 D-alanyl-D-alanine carboxypeptidase CUC43_01490 PF00392 Bacterial regulatory proteins, gntR family CUC43_01495 PF00005 ABC transporter CUC43_01515 PF01047 MarR family CUC43_01525 PF00860 Permease family CUC43_01530 PF01544 CorA-like Mg2+ transporter protein CUC43_01535 PF02885 Glycosyl transferase family, helical bundle domain CUC43_01535 PF00591 Glycosyl transferase family, a/b domain CUC43_01535 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CUC43_01540 PF01048 Phosphorylase superfamily CUC43_01545 PF01676 Metalloenzyme superfamily CUC43_01555 PF00589 Phage integrase family CUC43_01555 PF02899 Phage integrase, N-terminal SAM-like domain CUC43_01560 PF14004 Protein of unknown function (DUF4227) CUC43_01565 PF01475 Ferric uptake regulator family CUC43_01570 PF01944 Stage II sporulation protein M CUC43_01580 PF00293 NUDIX domain CUC43_01585 PF13072 Mother cell inhibitor of FtsZ CUC43_01590 PF00248 Aldo/keto reductase family CUC43_01595 PF00248 Aldo/keto reductase family CUC43_01600 PF04229 GrpB protein CUC43_01600 PF13673 Acetyltransferase (GNAT) domain CUC43_01610 PF00746 LPXTG cell wall anchor motif CUC43_01610 PF00149 Calcineurin-like phosphoesterase CUC43_01610 PF00565 Staphylococcal nuclease homologue CUC43_01610 PF02872 5'-nucleotidase, C-terminal domain CUC43_01620 PF12146 Serine aminopeptidase, S33 CUC43_01625 PF13726 Na+-H+ antiporter family CUC43_01625 PF03553 Na+/H+ antiporter family CUC43_01630 PF00356 Bacterial regulatory proteins, lacI family CUC43_01635 PF00583 Acetyltransferase (GNAT) family CUC43_01640 PF12146 Serine aminopeptidase, S33 CUC43_01645 PF10827 Protein of unknown function (DUF2552) CUC43_01655 PF01872 RibD C-terminal domain CUC43_01655 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CUC43_01660 PF00677 Lumazine binding domain CUC43_01665 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase CUC43_01665 PF00925 GTP cyclohydrolase II CUC43_01670 PF00885 6,7-dimethyl-8-ribityllumazine synthase CUC43_01680 PF06968 Biotin and Thiamin Synthesis associated domain CUC43_01680 PF04055 Radical SAM superfamily CUC43_01685 PF13847 Methyltransferase domain CUC43_01690 PF08241 Methyltransferase domain CUC43_01690 PF12697 Alpha/beta hydrolase family CUC43_01695 PF00155 Aminotransferase class I and II CUC43_01705 PF00202 Aminotransferase class-III CUC43_01725 PF00149 Calcineurin-like phosphoesterase CUC43_01725 PF02872 5'-nucleotidase, C-terminal domain CUC43_01735 PF13404 AsnC-type helix-turn-helix domain CUC43_01735 PF01037 Lrp/AsnC ligand binding domain CUC43_01755 PF14431 YwqJ-like deaminase CUC43_01755 PF14449 Pre-toxin TG CUC43_01755 PF04740 LXG domain of WXG superfamily CUC43_01760 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain CUC43_01760 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain CUC43_01765 PF00202 Aminotransferase class-III CUC43_01770 PF00696 Amino acid kinase family CUC43_01775 PF01960 ArgJ family CUC43_01780 PF01118 Semialdehyde dehydrogenase, NAD binding domain CUC43_01780 PF02774 Semialdehyde dehydrogenase, dimerisation domain CUC43_01790 PF00106 short chain dehydrogenase CUC43_01795 PF00753 Metallo-beta-lactamase superfamily CUC43_01800 PF14748 Pyrroline-5-carboxylate reductase dimerisation CUC43_01800 PF03807 NADP oxidoreductase coenzyme F420-dependent CUC43_01805 PF03313 Serine dehydratase alpha chain CUC43_01810 PF03315 Serine dehydratase beta chain CUC43_01810 PF01842 ACT domain CUC43_01820 PF00753 Metallo-beta-lactamase superfamily CUC43_01820 PF12706 Beta-lactamase superfamily domain CUC43_01830 PF00689 Cation transporting ATPase, C-terminus CUC43_01830 PF00690 Cation transporter/ATPase, N-terminus CUC43_01835 PF11798 IMS family HHH motif CUC43_01835 PF11799 impB/mucB/samB family C-terminal domain CUC43_01835 PF00817 impB/mucB/samB family CUC43_01845 PF07687 Peptidase dimerisation domain CUC43_01845 PF01546 Peptidase family M20/M25/M40 CUC43_01850 PF13302 Acetyltransferase (GNAT) domain CUC43_01865 PF03734 L,D-transpeptidase catalytic domain CUC43_01870 PF11728 Putative aromatic acid exporter C-terminal domain CUC43_01870 PF06081 Aromatic acid exporter family member 1 CUC43_01875 PF00005 ABC transporter CUC43_01880 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_01885 PF00497 Bacterial extracellular solute-binding proteins, family 3 CUC43_01895 PF06491 Disulphide isomerase CUC43_01900 PF11208 Protein of unknown function (DUF2992) CUC43_01905 PF09297 NADH pyrophosphatase zinc ribbon domain CUC43_01905 PF00293 NUDIX domain CUC43_01910 PF04239 Protein of unknown function (DUF421) CUC43_01915 PF01098 Cell cycle protein CUC43_01925 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CUC43_01925 PF00364 Biotin-requiring enzyme CUC43_01925 PF02817 e3 binding domain CUC43_01930 PF02779 Transketolase, pyrimidine binding domain CUC43_01930 PF02780 Transketolase, C-terminal domain CUC43_01935 PF00676 Dehydrogenase E1 component CUC43_01940 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC43_01940 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CUC43_01945 PF00871 Acetokinase family CUC43_01950 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CUC43_01950 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CUC43_01955 PF01515 Phosphate acetyl/butaryl transferase CUC43_01965 PF02954 Bacterial regulatory protein, Fis family CUC43_01965 PF00989 PAS fold CUC43_01965 PF00158 Sigma-54 interaction domain CUC43_01975 PF03009 Glycerophosphoryl diester phosphodiesterase family CUC43_01980 PF14174 YycC-like protein CUC43_01990 PF00072 Response regulator receiver domain CUC43_01990 PF08769 Sporulation initiation factor Spo0A C terminal CUC43_02000 PF17820 PDZ domain CUC43_02000 PF05580 SpoIVB peptidase S55 CUC43_02005 PF13476 AAA domain CUC43_02010 PF02863 Arginine repressor, C-terminal domain CUC43_02010 PF01316 Arginine repressor, DNA binding domain CUC43_02015 PF01479 S4 domain CUC43_02015 PF01728 FtsJ-like methyltransferase CUC43_02020 PF02780 Transketolase, C-terminal domain CUC43_02020 PF02779 Transketolase, pyrimidine binding domain CUC43_02020 PF13292 1-deoxy-D-xylulose-5-phosphate synthase CUC43_02025 PF00348 Polyprenyl synthetase CUC43_02030 PF02609 Exonuclease VII small subunit CUC43_02035 PF13742 OB-fold nucleic acid binding domain CUC43_02035 PF02601 Exonuclease VII, large subunit CUC43_02040 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain CUC43_02040 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain CUC43_02045 PF01029 NusB family CUC43_02050 PF03780 Asp23 family, cell envelope-related function CUC43_02055 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CUC43_02055 PF02785 Biotin carboxylase C-terminal domain CUC43_02055 PF00289 Biotin carboxylase, N-terminal domain CUC43_02060 PF00364 Biotin-requiring enzyme CUC43_02070 PF12685 SpoIIIAH-like protein CUC43_02080 PF09581 Stage III sporulation protein AF (Spore_III_AF) CUC43_02085 PF09546 Stage III sporulation protein AE (spore_III_AE) CUC43_02090 PF06686 Stage III sporulation protein AC/AD protein family CUC43_02095 PF06686 Stage III sporulation protein AC/AD protein family CUC43_02100 PF09548 Stage III sporulation protein AB (spore_III_AB) CUC43_02125 PF08207 Elongation factor P (EF-P) KOW-like domain CUC43_02125 PF01132 Elongation factor P (EF-P) OB domain CUC43_02125 PF09285 Elongation factor P, C-terminal CUC43_02130 PF00557 Metallopeptidase family M24 CUC43_02130 PF01321 Creatinase/Prolidase N-terminal domain CUC43_02135 PF01220 Dehydroquinase class II CUC43_02140 PF11085 Conserved membrane protein YqhR CUC43_02145 PF07136 Protein of unknown function (DUF1385) CUC43_02155 PF13419 Haloacid dehalogenase-like hydrolase CUC43_02160 PF01325 Iron dependent repressor, N-terminal DNA binding domain CUC43_02160 PF02742 Iron dependent repressor, metal binding and dimerisation domain CUC43_02190 PF03099 Biotin/lipoate A/B protein ligase family CUC43_02195 PF00581 Rhodanese-like domain CUC43_02205 PF00356 Bacterial regulatory proteins, lacI family CUC43_02205 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CUC43_02215 PF00893 Small Multidrug Resistance protein CUC43_02220 PF00893 Small Multidrug Resistance protein CUC43_02260 PF00005 ABC transporter CUC43_02265 PF00392 Bacterial regulatory proteins, gntR family CUC43_02280 PF02347 Glycine cleavage system P-protein CUC43_02285 PF02347 Glycine cleavage system P-protein CUC43_02290 PF02347 Glycine cleavage system P-protein CUC43_02295 PF08669 Glycine cleavage T-protein C-terminal barrel domain CUC43_02295 PF01571 Aminomethyltransferase folate-binding domain CUC43_02300 PF00176 SNF2 family N-terminal domain CUC43_02300 PF00271 Helicase conserved C-terminal domain CUC43_02305 PF11079 Bacterial protein YqhG of unknown function CUC43_02330 PF14038 YqzE-like protein CUC43_02335 PF01202 Shikimate kinase CUC43_02360 PF07963 Prokaryotic N-terminal methylation motif CUC43_02370 PF00482 Type II secretion system (T2SS), protein F CUC43_02375 PF00437 Type II/IV secretion system protein CUC43_02385 PF11117 Protein of unknown function (DUF2626) CUC43_02390 PF00375 Sodium:dicarboxylate symporter family CUC43_02425 PF03033 Glycosyltransferase family 28 N-terminal domain CUC43_02425 PF04101 Glycosyltransferase family 28 C-terminal domain CUC43_02430 PF02965 Vitamin B12 dependent methionine synthase, activation domain CUC43_02430 PF00809 Pterin binding enzyme CUC43_02430 PF02574 Homocysteine S-methyltransferase CUC43_02430 PF02310 B12 binding domain CUC43_02430 PF02607 B12 binding domain CUC43_02435 PF02574 Homocysteine S-methyltransferase CUC43_02435 PF02219 Methylenetetrahydrofolate reductase CUC43_02440 PF01053 Cys/Met metabolism PLP-dependent enzyme CUC43_02445 PF01053 Cys/Met metabolism PLP-dependent enzyme CUC43_02455 PF01022 Bacterial regulatory protein, arsR family CUC43_02465 PF00753 Metallo-beta-lactamase superfamily CUC43_02470 PF10958 Protein of unknown function (DUF2759) CUC43_02475 PF00480 ROK family CUC43_02480 PF06014 Bacterial protein of unknown function (DUF910) CUC43_02485 PF01812 5-formyltetrahydrofolate cyclo-ligase family CUC43_02490 PF00471 Ribosomal protein L33 CUC43_02495 PF00483 Nucleotidyl transferase CUC43_02500 PF01895 PhoU domain CUC43_02505 PF00005 ABC transporter CUC43_02510 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_02515 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_02520 PF12849 PBP superfamily domain CUC43_02530 PF07690 Major Facilitator Superfamily CUC43_02535 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CUC43_02535 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CUC43_02555 PF04551 GcpE protein CUC43_02560 PF01475 Ferric uptake regulator family CUC43_02565 PF00950 ABC 3 transport family CUC43_02570 PF00005 ABC transporter CUC43_02575 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CUC43_02575 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CUC43_02580 PF11116 Protein of unknown function (DUF2624) CUC43_02585 PF01261 Xylose isomerase-like TIM barrel CUC43_02590 PF00271 Helicase conserved C-terminal domain CUC43_02590 PF00270 DEAD/DEAH box helicase CUC43_02600 PF02401 LytB protein CUC43_02605 PF01784 NIF3 (NGG1p interacting factor 3) CUC43_02610 PF04816 tRNA (adenine(22)-N(1))-methyltransferase CUC43_02615 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CUC43_02620 PF04545 Sigma-70, region 4 CUC43_02620 PF03979 Sigma-70 factor, region 1.1 CUC43_02620 PF00140 Sigma-70 factor, region 1.2 CUC43_02620 PF04542 Sigma-70 region 2 CUC43_02620 PF04539 Sigma-70 region 3 CUC43_02625 PF10410 DnaB-helicase binding domain of primase CUC43_02625 PF08275 DNA primase catalytic core, N-terminal domain CUC43_02625 PF01807 CHC2 zinc finger CUC43_02645 PF03618 Kinase/pyrophosphorylase CUC43_02650 PF00571 CBS domain CUC43_02650 PF08279 HTH domain CUC43_02655 PF11967 Recombination protein O N terminal CUC43_02655 PF02565 Recombination protein O C terminal CUC43_02665 PF07650 KH domain CUC43_02665 PF01926 50S ribosome-binding GTPase CUC43_02670 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CUC43_02675 PF01219 Prokaryotic diacylglycerol kinase CUC43_02680 PF02130 Uncharacterized protein family UPF0054 CUC43_02685 PF07698 7TM receptor with intracellular HD hydrolase CUC43_02685 PF07697 7TM-HD extracellular CUC43_02685 PF01966 HD domain CUC43_02690 PF02562 PhoH-like protein CUC43_02695 PF06898 Putative stage IV sporulation protein YqfD CUC43_02705 PF07873 YabP family CUC43_02710 PF09424 Yqey-like protein CUC43_02715 PF01165 Ribosomal protein S21 CUC43_02730 PF00919 Uncharacterized protein family UPF0004 CUC43_02730 PF04055 Radical SAM superfamily CUC43_02730 PF01938 TRAM domain CUC43_02735 PF04452 RNA methyltransferase CUC43_02745 PF01556 DnaJ C terminal domain CUC43_02745 PF00684 DnaJ central domain CUC43_02745 PF00226 DnaJ domain CUC43_02750 PF00012 Hsp70 protein CUC43_02755 PF01025 GrpE CUC43_02760 PF01628 HrcA protein C terminal domain CUC43_02765 PF06969 HemN C-terminal domain CUC43_02765 PF04055 Radical SAM superfamily CUC43_02770 PF01638 HxlR-like helix-turn-helix CUC43_02775 PF00009 Elongation factor Tu GTP binding domain CUC43_02775 PF03144 Elongation factor Tu domain 2 CUC43_02775 PF00679 Elongation factor G C-terminus CUC43_02775 PF06421 GTP-binding protein LepA C-terminus CUC43_02785 PF03418 Germination protease CUC43_02790 PF01649 Ribosomal protein S20 CUC43_02795 PF06144 DNA polymerase III, delta subunit CUC43_02800 PF14141 YqzM-like protein CUC43_02805 PF03772 Competence protein CUC43_02805 PF13567 Domain of unknown function (DUF4131) CUC43_02805 PF00753 Metallo-beta-lactamase superfamily CUC43_02810 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CUC43_02815 PF10531 SLBB domain CUC43_02820 PF03807 NADP oxidoreductase coenzyme F420-dependent CUC43_02820 PF14748 Pyrroline-5-carboxylate reductase dimerisation CUC43_02825 PF13649 Methyltransferase domain CUC43_02835 PF01966 HD domain CUC43_02840 PF01467 Cytidylyltransferase-like CUC43_02845 PF01985 CRS1 / YhbY (CRM) domain CUC43_02850 PF08501 Shikimate dehydrogenase substrate binding domain CUC43_02850 PF01488 Shikimate / quinate 5-dehydrogenase CUC43_02850 PF18317 Shikimate 5'-dehydrogenase C-terminal domain CUC43_02855 PF01926 50S ribosome-binding GTPase CUC43_02870 PF02666 Phosphatidylserine decarboxylase CUC43_02875 PF04545 Sigma-70, region 4 CUC43_02875 PF04542 Sigma-70 region 2 CUC43_02890 PF00471 Ribosomal protein L33 CUC43_02900 PF04607 Region found in RelA / SpoT proteins CUC43_02910 PF00245 Alkaline phosphatase CUC43_02920 PF00583 Acetyltransferase (GNAT) family CUC43_02925 PF00561 alpha/beta hydrolase fold CUC43_02925 PF08386 TAP-like protein CUC43_02960 PF05922 Peptidase inhibitor I9 CUC43_02960 PF13860 FlgD Ig-like domain CUC43_02960 PF00082 Subtilase family CUC43_02960 PF02225 PA domain CUC43_02965 PF00351 Biopterin-dependent aromatic amino acid hydroxylase CUC43_02975 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CUC43_02980 PF07681 DoxX CUC43_03010 PF00005 ABC transporter CUC43_03015 PF01032 FecCD transport family CUC43_03020 PF01497 Periplasmic binding protein CUC43_03035 PF00465 Iron-containing alcohol dehydrogenase CUC43_03035 PF00171 Aldehyde dehydrogenase family CUC43_03040 PF01053 Cys/Met metabolism PLP-dependent enzyme CUC43_03045 PF00291 Pyridoxal-phosphate dependent enzyme CUC43_03050 PF01048 Phosphorylase superfamily CUC43_03055 PF08241 Methyltransferase domain CUC43_03070 PF03717 Penicillin-binding Protein dimerisation domain CUC43_03070 PF00905 Penicillin binding protein transpeptidase domain CUC43_03075 PF03449 Transcription elongation factor, N-terminal CUC43_03075 PF01272 Transcription elongation factor, GreA/GreB, C-term CUC43_03080 PF00485 Phosphoribulokinase / Uridine kinase family CUC43_03100 PF02618 YceG-like family CUC43_03105 PF06949 Protein of unknown function (DUF1292) CUC43_03110 PF03652 Holliday junction resolvase CUC43_03115 PF06135 IreB regulatory phosphoprotein CUC43_03120 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CUC43_03120 PF01411 tRNA synthetases class II (A) CUC43_03120 PF02272 DHHA1 domain CUC43_03130 PF01594 AI-2E family transporter CUC43_03150 PF13538 UvrD-like helicase C-terminal domain CUC43_03150 PF14490 Helix-hairpin-helix containing domain CUC43_03150 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain CUC43_03165 PF00266 Aminotransferase class-V CUC43_03170 PF02082 Transcriptional regulator CUC43_03175 PF05496 Holliday junction DNA helicase RuvB P-loop domain CUC43_03175 PF12002 MgsA AAA+ ATPase C terminal CUC43_03175 PF16193 AAA C-terminal domain CUC43_03190 PF00899 ThiF family CUC43_03195 PF01336 OB-fold nucleic acid binding domain CUC43_03195 PF02938 GAD domain CUC43_03195 PF00152 tRNA synthetases class II (D, K and N) CUC43_03200 PF13393 Histidyl-tRNA synthetase CUC43_03200 PF03129 Anticodon binding domain CUC43_03215 PF02580 D-Tyr-tRNA(Tyr) deacylase CUC43_03220 PF04607 Region found in RelA / SpoT proteins CUC43_03220 PF02824 TGS domain CUC43_03220 PF13291 ACT domain CUC43_03225 PF00156 Phosphoribosyl transferase domain CUC43_03230 PF10141 Single-strand DNA-specific exonuclease, C terminal domain CUC43_03230 PF01368 DHH family CUC43_03230 PF02272 DHHA1 domain CUC43_03230 PF17768 RecJ OB domain CUC43_03235 PF16916 Dimerisation domain of Zinc Transporter CUC43_03235 PF01545 Cation efflux family CUC43_03240 PF07549 SecD/SecF GG Motif CUC43_03240 PF02355 Protein export membrane protein CUC43_03245 PF13797 Post-transcriptional regulator CUC43_03250 PF01943 Polysaccharide biosynthesis protein CUC43_03250 PF14667 Polysaccharide biosynthesis C-terminal domain CUC43_03255 PF04239 Protein of unknown function (DUF421) CUC43_03265 PF01548 Transposase CUC43_03265 PF02371 Transposase IS116/IS110/IS902 family CUC43_03275 PF02699 Preprotein translocase subunit CUC43_03280 PF01702 Queuine tRNA-ribosyltransferase CUC43_03285 PF02547 Queuosine biosynthesis protein CUC43_03290 PF11146 Protein of unknown function (DUF2905) CUC43_03295 PF05491 RuvB C-terminal winged helix domain CUC43_03295 PF05496 Holliday junction DNA helicase RuvB P-loop domain CUC43_03295 PF17864 RuvB AAA lid domain CUC43_03300 PF07499 RuvA, C-terminal domain CUC43_03300 PF01330 RuvA N terminal domain CUC43_03305 PF01497 Periplasmic binding protein CUC43_03315 PF00892 EamA-like transporter family CUC43_03320 PF01022 Bacterial regulatory protein, arsR family CUC43_03335 PF01476 LysM domain CUC43_03340 PF02445 Quinolinate synthetase A protein CUC43_03345 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain CUC43_03345 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain CUC43_03350 PF00890 FAD binding domain CUC43_03350 PF02910 Fumarate reductase flavoprotein C-term CUC43_03355 PF00266 Aminotransferase class-V CUC43_03360 PF08279 HTH domain CUC43_03360 PF02829 3H domain CUC43_03365 PF03475 3-alpha domain CUC43_03365 PF03473 MOSC domain CUC43_03375 PF00800 Prephenate dehydratase CUC43_03375 PF01842 ACT domain CUC43_03380 PF02687 FtsX-like permease family CUC43_03385 PF02687 FtsX-like permease family CUC43_03390 PF00005 ABC transporter CUC43_03395 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_03400 PF00486 Transcriptional regulatory protein, C terminal CUC43_03400 PF00072 Response regulator receiver domain CUC43_03405 PF01926 50S ribosome-binding GTPase CUC43_03405 PF01018 GTP1/OBG CUC43_03405 PF09269 Domain of unknown function (DUF1967) CUC43_03410 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CUC43_03410 PF14682 Sporulation initiation phospho-transferase B, C-terminal CUC43_03415 PF01016 Ribosomal L27 protein CUC43_03420 PF04327 Cysteine protease Prp CUC43_03425 PF00829 Ribosomal prokaryotic L21 protein CUC43_03430 PF00575 S1 RNA binding domain CUC43_03430 PF10150 Ribonuclease E/G family CUC43_03435 PF02163 Peptidase family M50 CUC43_03440 PF01551 Peptidase family M23 CUC43_03445 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain CUC43_03450 PF03775 Septum formation inhibitor MinC, C-terminal domain CUC43_03460 PF04085 rod shape-determining protein MreC CUC43_03470 PF04002 RadC-like JAB domain CUC43_03475 PF02545 Maf-like protein CUC43_03490 PF02875 Mur ligase family, glutamate ligase domain CUC43_03490 PF08245 Mur ligase middle domain CUC43_03495 PF00133 tRNA synthetases class I (I, L, M and V) CUC43_03495 PF10458 Valyl tRNA synthetase tRNA binding arm CUC43_03495 PF08264 Anticodon-binding domain of tRNA CUC43_03505 PF01476 LysM domain CUC43_03510 PF00202 Aminotransferase class-III CUC43_03515 PF00490 Delta-aminolevulinic acid dehydratase CUC43_03520 PF02602 Uroporphyrinogen-III synthase HemD CUC43_03525 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain CUC43_03525 PF03900 Porphobilinogen deaminase, C-terminal domain CUC43_03530 PF01578 Cytochrome C assembly protein CUC43_03535 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain CUC43_03535 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain CUC43_03535 PF01488 Shikimate / quinate 5-dehydrogenase CUC43_03540 PF01047 MarR family CUC43_03545 PF02566 OsmC-like protein CUC43_03550 PF01926 50S ribosome-binding GTPase CUC43_03555 PF02190 ATP-dependent protease La (LON) substrate-binding domain CUC43_03555 PF05362 Lon protease (S16) C-terminal proteolytic domain CUC43_03555 PF00004 ATPase family associated with various cellular activities (AAA) CUC43_03560 PF05362 Lon protease (S16) C-terminal proteolytic domain CUC43_03560 PF00004 ATPase family associated with various cellular activities (AAA) CUC43_03565 PF10431 C-terminal, D2-small domain, of ClpB protein CUC43_03565 PF07724 AAA domain (Cdc48 subfamily) CUC43_03565 PF06689 ClpX C4-type zinc finger CUC43_03570 PF05697 Bacterial trigger factor protein (TF) CUC43_03570 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase CUC43_03570 PF05698 Bacterial trigger factor protein (TF) C-terminus CUC43_03590 PF08000 Bacterial PH domain CUC43_03590 PF11724 YvbH-like oligomerisation region CUC43_03630 PF12850 Calcineurin-like phosphoesterase superfamily domain CUC43_03635 PF01725 Ham1 family CUC43_03640 PF03725 3' exoribonuclease family, domain 2 CUC43_03640 PF01138 3' exoribonuclease family, domain 1 CUC43_03645 PF10646 Sporulation and spore germination CUC43_03650 PF01177 Asp/Glu/Hydantoin racemase CUC43_03655 PF07690 Major Facilitator Superfamily CUC43_03665 PF00440 Bacterial regulatory proteins, tetR family CUC43_03675 PF00196 Bacterial regulatory proteins, luxR family CUC43_03680 PF00860 Permease family CUC43_03685 PF07969 Amidohydrolase family CUC43_03690 PF04024 PspC domain CUC43_03695 PF07883 Cupin domain CUC43_03695 PF01381 Helix-turn-helix CUC43_03700 PF13536 Putative multidrug resistance efflux transporter CUC43_03705 PF00230 Major intrinsic protein CUC43_03710 PF02082 Transcriptional regulator CUC43_03720 PF00005 ABC transporter CUC43_03720 PF13732 Domain of unknown function (DUF4162) CUC43_03725 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) CUC43_03730 PF00691 OmpA family CUC43_03730 PF13677 Membrane MotB of proton-channel complex MotA/MotB CUC43_03735 PF01618 MotA/TolQ/ExbB proton channel family CUC43_03745 PF02557 D-alanyl-D-alanine carboxypeptidase CUC43_03750 PF03061 Thioesterase superfamily CUC43_03755 PF13183 4Fe-4S dicluster domain CUC43_03755 PF13085 2Fe-2S iron-sulfur cluster binding domain CUC43_03760 PF00890 FAD binding domain CUC43_03760 PF02910 Fumarate reductase flavoprotein C-term CUC43_03765 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit CUC43_03770 PF10702 Protein of unknown function (DUF2507) CUC43_03775 PF08459 UvrC Helix-hairpin-helix N-terminal CUC43_03775 PF01541 GIY-YIG catalytic domain CUC43_03775 PF02151 UvrB/uvrC motif CUC43_03780 PF00085 Thioredoxin CUC43_03785 PF01012 Electron transfer flavoprotein domain CUC43_03785 PF00766 Electron transfer flavoprotein FAD-binding domain CUC43_03790 PF01012 Electron transfer flavoprotein domain CUC43_03795 PF00378 Enoyl-CoA hydratase/isomerase CUC43_03800 PF00440 Bacterial regulatory proteins, tetR family CUC43_03800 PF08359 YsiA-like protein, C-terminal region CUC43_03805 PF13193 AMP-binding enzyme C-terminal domain CUC43_03805 PF00501 AMP-binding enzyme CUC43_03815 PF05163 DinB family CUC43_03845 PF00005 ABC transporter CUC43_03850 PF00512 His Kinase A (phospho-acceptor) domain CUC43_03850 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_03855 PF00486 Transcriptional regulatory protein, C terminal CUC43_03855 PF00072 Response regulator receiver domain CUC43_03865 PF09962 Uncharacterized conserved protein (DUF2196) CUC43_03870 PF10672 S-adenosylmethionine-dependent methyltransferase CUC43_03870 PF17785 PUA-like domain CUC43_03875 PF03992 Antibiotic biosynthesis monooxygenase CUC43_03880 PF04203 Sortase domain CUC43_03885 PF00005 ABC transporter CUC43_03890 PF01032 FecCD transport family CUC43_03895 PF01497 Periplasmic binding protein CUC43_03900 PF05031 Iron Transport-associated domain CUC43_03910 PF05031 Iron Transport-associated domain CUC43_03915 PF05525 Branched-chain amino acid transport protein CUC43_03920 PF00849 RNA pseudouridylate synthase CUC43_03920 PF01479 S4 domain CUC43_03930 PF00488 MutS domain V CUC43_03930 PF01713 Smr domain CUC43_03935 PF02811 PHP domain CUC43_03935 PF14716 Helix-hairpin-helix domain CUC43_03935 PF14791 DNA polymerase beta thumb CUC43_03940 PF02674 Colicin V production protein CUC43_03945 PF05164 Cell division protein ZapA CUC43_03950 PF11858 Domain of unknown function (DUF3378) CUC43_03950 PF01351 Ribonuclease HII CUC43_03970 PF01336 OB-fold nucleic acid binding domain CUC43_03970 PF00152 tRNA synthetases class II (D, K and N) CUC43_03975 PF03483 B3/4 domain CUC43_03975 PF03484 tRNA synthetase B5 domain CUC43_03975 PF03147 Ferredoxin-fold anticodon binding domain CUC43_03975 PF01588 Putative tRNA binding domain CUC43_03975 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain CUC43_03980 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain CUC43_03980 PF01409 tRNA synthetases class II core domain (F) CUC43_03985 PF08032 RNA 2'-O ribose methyltransferase substrate binding CUC43_03985 PF00588 SpoU rRNA Methylase family CUC43_03990 PF14098 Small, acid-soluble spore protein I CUC43_03995 PF01966 HD domain CUC43_04005 PF07690 Major Facilitator Superfamily CUC43_04015 PF00440 Bacterial regulatory proteins, tetR family CUC43_04015 PF16859 Tetracyclin repressor-like, C-terminal domain CUC43_04020 PF05343 M42 glutamyl aminopeptidase CUC43_04030 PF00453 Ribosomal protein L20 CUC43_04035 PF01632 Ribosomal protein L35 CUC43_04040 PF00707 Translation initiation factor IF-3, C-terminal domain CUC43_04040 PF05198 Translation initiation factor IF-3, N-terminal domain CUC43_04045 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CUC43_04045 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CUC43_04045 PF03129 Anticodon binding domain CUC43_04045 PF02824 TGS domain CUC43_04050 PF08812 YtxC-like family CUC43_04055 PF01695 IstB-like ATP binding protein CUC43_04055 PF07319 Primosomal protein DnaI N-terminus CUC43_04060 PF07261 Replication initiation and membrane attachment CUC43_04065 PF03477 ATP cone domain CUC43_04070 PF02675 S-adenosylmethionine decarboxylase CUC43_04080 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CUC43_04080 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CUC43_04085 PF01121 Dephospho-CoA kinase CUC43_04090 PF02659 Putative manganese efflux pump CUC43_04095 PF06827 Zinc finger found in FPG and IleRS CUC43_04095 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain CUC43_04095 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain CUC43_04100 PF01367 5'-3' exonuclease, C-terminal SAM fold CUC43_04100 PF00476 DNA polymerase family A CUC43_04100 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CUC43_04105 PF00989 PAS fold CUC43_04105 PF16736 Single Cache-like CUC43_04105 PF00512 His Kinase A (phospho-acceptor) domain CUC43_04105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_04110 PF00486 Transcriptional regulatory protein, C terminal CUC43_04110 PF00072 Response regulator receiver domain CUC43_04130 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CUC43_04130 PF00056 lactate/malate dehydrogenase, NAD binding domain CUC43_04135 PF00180 Isocitrate/isopropylmalate dehydrogenase CUC43_04140 PF00285 Citrate synthase, C-terminal domain CUC43_04150 PF04284 Protein of unknown function (DUF441) CUC43_04155 PF01594 AI-2E family transporter CUC43_04160 PF04186 FxsA cytoplasmic membrane protein CUC43_04165 PF02887 Pyruvate kinase, alpha/beta domain CUC43_04165 PF00224 Pyruvate kinase, barrel domain CUC43_04165 PF00391 PEP-utilising enzyme, mobile domain CUC43_04170 PF00365 Phosphofructokinase CUC43_04175 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CUC43_04180 PF17848 Acetyl-coA carboxylase zinc finger domain CUC43_04180 PF01039 Carboxyl transferase domain CUC43_04185 PF00392 Bacterial regulatory proteins, gntR family CUC43_04190 PF00390 Malic enzyme, N-terminal domain CUC43_04190 PF03949 Malic enzyme, NAD binding domain CUC43_04195 PF02811 PHP domain CUC43_04195 PF14579 Helix-hairpin-helix motif CUC43_04195 PF07733 Bacterial DNA polymerase III alpha NTPase domain CUC43_04195 PF01336 OB-fold nucleic acid binding domain CUC43_04195 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CUC43_04200 PF14034 Sporulation protein YtrH CUC43_04210 PF01368 DHH family CUC43_04210 PF02272 DHHA1 domain CUC43_04215 PF14007 YtpI-like protein CUC43_04230 PF00392 Bacterial regulatory proteins, gntR family CUC43_04230 PF00571 CBS domain CUC43_04230 PF07085 DRTGG domain CUC43_04230 PF03061 Thioesterase superfamily CUC43_04245 PF01321 Creatinase/Prolidase N-terminal domain CUC43_04245 PF00557 Metallopeptidase family M24 CUC43_04300 PF07883 Cupin domain CUC43_04310 PF01381 Helix-turn-helix CUC43_04320 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CUC43_04320 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CUC43_04330 PF00582 Universal stress protein family CUC43_04350 PF00206 Lyase CUC43_04350 PF14698 Argininosuccinate lyase C-terminal CUC43_04355 PF00764 Arginosuccinate synthase CUC43_04380 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CUC43_04380 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CUC43_04385 PF12787 EcsC protein family CUC43_04400 PF00871 Acetokinase family CUC43_04405 PF02384 N-6 DNA Methylase CUC43_04410 PF08534 Redoxin CUC43_04415 PF09579 Sporulation protein YtfJ (Spore_YtfJ) CUC43_04425 PF01513 ATP-NAD kinase CUC43_04430 PF07969 Amidohydrolase family CUC43_04440 PF13193 AMP-binding enzyme C-terminal domain CUC43_04440 PF00501 AMP-binding enzyme CUC43_04445 PF00269 Small, acid-soluble spore proteins, alpha/beta type CUC43_04450 PF02568 Thiamine biosynthesis protein (ThiI) CUC43_04450 PF02926 THUMP domain CUC43_04455 PF00266 Aminotransferase class-V CUC43_04460 PF06160 Septation ring formation regulator, EzrA CUC43_04470 PF03466 LysR substrate binding domain CUC43_04470 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC43_04475 PF00892 EamA-like transporter family CUC43_04480 PF00440 Bacterial regulatory proteins, tetR family CUC43_04485 PF13185 GAF domain CUC43_04490 PF01053 Cys/Met metabolism PLP-dependent enzyme CUC43_04500 PF00163 Ribosomal protein S4/S9 N-terminal domain CUC43_04500 PF01479 S4 domain CUC43_04535 PF01479 S4 domain CUC43_04535 PF00579 tRNA synthetases class I (W and Y) CUC43_04545 PF04542 Sigma-70 region 2 CUC43_04545 PF08281 Sigma-70, region 4 CUC43_04560 PF13193 AMP-binding enzyme C-terminal domain CUC43_04560 PF00501 AMP-binding enzyme CUC43_04565 PF00583 Acetyltransferase (GNAT) family CUC43_04570 PF00571 CBS domain CUC43_04575 PF00850 Histone deacetylase domain CUC43_04580 PF00561 alpha/beta hydrolase fold CUC43_04590 PF00072 Response regulator receiver domain CUC43_04590 PF00486 Transcriptional regulatory protein, C terminal CUC43_04595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_04595 PF00512 His Kinase A (phospho-acceptor) domain CUC43_04595 PF00989 PAS fold CUC43_04595 PF16736 Single Cache-like CUC43_04605 PF01548 Transposase CUC43_04605 PF02371 Transposase IS116/IS110/IS902 family CUC43_04615 PF12796 Ankyrin repeats (3 copies) CUC43_04620 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CUC43_04625 PF01741 Large-conductance mechanosensitive channel, MscL CUC43_04650 PF00356 Bacterial regulatory proteins, lacI family CUC43_04660 PF07537 CamS sex pheromone cAM373 precursor CUC43_04665 PF11009 Protein of unknown function (DUF2847) CUC43_04675 PF02073 Thermophilic metalloprotease (M29) CUC43_04700 PF13302 Acetyltransferase (GNAT) domain CUC43_04705 PF00892 EamA-like transporter family CUC43_04710 PF13411 MerR HTH family regulatory protein CUC43_04715 PF03551 Transcriptional regulator PadR-like family CUC43_04725 PF08245 Mur ligase middle domain CUC43_04725 PF02875 Mur ligase family, glutamate ligase domain CUC43_04725 PF01225 Mur ligase family, catalytic domain CUC43_04735 PF09397 Ftsk gamma domain CUC43_04735 PF17854 FtsK alpha domain CUC43_04735 PF01580 FtsK/SpoIIIE family CUC43_04740 PF08239 Bacterial SH3 domain CUC43_04740 PF01520 N-acetylmuramoyl-L-alanine amidase CUC43_04750 PF01588 Putative tRNA binding domain CUC43_04750 PF14794 Domain of unknown function (DUF4479) CUC43_04755 PF07285 Protein of unknown function (DUF1444) CUC43_04760 PF00085 Thioredoxin CUC43_04765 PF01931 Protein of unknown function DUF84 CUC43_04770 PF05343 M42 glutamyl aminopeptidase CUC43_04785 PF00753 Metallo-beta-lactamase superfamily CUC43_04790 PF02390 Putative methyltransferase CUC43_04795 PF14165 YtzH-like protein CUC43_04800 PF01636 Phosphotransferase enzyme family CUC43_04805 PF17999 Pullulanase N1-terminal domain CUC43_04805 PF00128 Alpha amylase, catalytic domain CUC43_04805 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CUC43_04815 PF02834 LigT like Phosphoesterase CUC43_04820 PF01546 Peptidase family M20/M25/M40 CUC43_04825 PF08220 DeoR-like helix-turn-helix domain CUC43_04830 PF01479 S4 domain CUC43_04830 PF00849 RNA pseudouridylate synthase CUC43_04835 PF01943 Polysaccharide biosynthesis protein CUC43_04835 PF14667 Polysaccharide biosynthesis C-terminal domain CUC43_04850 PF07690 Major Facilitator Superfamily CUC43_04855 PF01022 Bacterial regulatory protein, arsR family CUC43_04860 PF08327 Activator of Hsp90 ATPase homolog 1-like protein CUC43_04875 PF10957 Sporulation protein Cse60 CUC43_04885 PF02559 CarD-like/TRCF domain CUC43_04895 PF06800 Sugar transport protein CUC43_04910 PF02391 MoaE protein CUC43_04915 PF03205 Molybdopterin guanine dinucleotide synthesis protein B CUC43_04920 PF03454 MoeA C-terminal region (domain IV) CUC43_04920 PF03453 MoeA N-terminal region (domain I and II) CUC43_04920 PF00994 Probable molybdopterin binding domain CUC43_04925 PF01967 MoaC family CUC43_04930 PF00899 ThiF family CUC43_04935 PF06463 Molybdenum Cofactor Synthesis C CUC43_04935 PF04055 Radical SAM superfamily CUC43_04960 PF00581 Rhodanese-like domain CUC43_04970 PF00561 alpha/beta hydrolase fold CUC43_04990 PF03323 Bacillus/Clostridium GerA spore germination protein CUC43_04995 PF03845 Spore germination protein CUC43_05020 PF00133 tRNA synthetases class I (I, L, M and V) CUC43_05020 PF08264 Anticodon-binding domain of tRNA CUC43_05020 PF09334 tRNA synthetases class I (M) CUC43_05020 PF13603 Leucyl-tRNA synthetase, Domain 2 CUC43_05025 PF07690 Major Facilitator Superfamily CUC43_05045 PF02080 TrkA-C domain CUC43_05050 PF00589 Phage integrase family CUC43_05060 PF00005 ABC transporter CUC43_05070 PF04235 Protein of unknown function (DUF418) CUC43_05070 PF07786 Protein of unknown function (DUF1624) CUC43_05080 PF10732 Protein of unknown function (DUF2524) CUC43_05085 PF04055 Radical SAM superfamily CUC43_05085 PF16199 Radical_SAM C-terminal domain CUC43_05090 PF06962 Putative rRNA methylase CUC43_05095 PF13732 Domain of unknown function (DUF4162) CUC43_05095 PF00005 ABC transporter CUC43_05105 PF01177 Asp/Glu/Hydantoin racemase CUC43_05125 PF10776 Protein of unknown function (DUF2600) CUC43_05130 PF12146 Serine aminopeptidase, S33 CUC43_05135 PF00132 Bacterial transferase hexapeptide (six repeats) CUC43_05140 PF01569 PAP2 superfamily CUC43_05145 PF13439 Glycosyltransferase Family 4 CUC43_05145 PF00534 Glycosyl transferases group 1 CUC43_05150 PF12804 MobA-like NTP transferase domain CUC43_05155 PF00994 Probable molybdopterin binding domain CUC43_05170 PF02772 S-adenosylmethionine synthetase, central domain CUC43_05170 PF02773 S-adenosylmethionine synthetase, C-terminal domain CUC43_05170 PF00438 S-adenosylmethionine synthetase, N-terminal domain CUC43_05180 PF01293 Phosphoenolpyruvate carboxykinase CUC43_05250 PF13188 PAS domain CUC43_05250 PF00989 PAS fold CUC43_05250 PF13426 PAS domain CUC43_05250 PF00512 His Kinase A (phospho-acceptor) domain CUC43_05250 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_05255 PF08447 PAS fold CUC43_05255 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_05255 PF00512 His Kinase A (phospho-acceptor) domain CUC43_05255 PF00989 PAS fold CUC43_05260 PF00561 alpha/beta hydrolase fold CUC43_05260 PF08386 TAP-like protein CUC43_05265 PF00884 Sulfatase CUC43_05285 PF00005 ABC transporter CUC43_05290 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_05325 PF00293 NUDIX domain CUC43_05355 PF02664 S-Ribosylhomocysteinase (LuxS) CUC43_05360 PF01809 Putative membrane protein insertion efficiency factor CUC43_05365 PF00484 Carbonic anhydrase CUC43_05370 PF01654 Cytochrome bd terminal oxidase subunit I CUC43_05375 PF02322 Cytochrome bd terminal oxidase subunit II CUC43_05380 PF10676 Spore germination protein gerPA/gerPF CUC43_05405 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CUC43_05405 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CUC43_05430 PF04012 PspA/IM30 family CUC43_05445 PF07664 Ferrous iron transport protein B C terminus CUC43_05445 PF07670 Nucleoside recognition CUC43_05445 PF02421 Ferrous iron transport protein B CUC43_05445 PF17910 FeoB cytosolic helical domain CUC43_05465 PF09515 Thiamine transporter protein (Thia_YuaJ) CUC43_05470 PF00672 HAMP domain CUC43_05470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_05470 PF00512 His Kinase A (phospho-acceptor) domain CUC43_05475 PF00072 Response regulator receiver domain CUC43_05475 PF00486 Transcriptional regulatory protein, C terminal CUC43_05505 PF00781 Diacylglycerol kinase catalytic domain CUC43_05535 PF00005 ABC transporter CUC43_05545 PF00248 Aldo/keto reductase family CUC43_05570 PF09335 SNARE associated Golgi protein CUC43_05575 PF00398 Ribosomal RNA adenine dimethylase CUC43_05590 PF12833 Helix-turn-helix domain CUC43_05590 PF02311 AraC-like ligand binding domain CUC43_05600 PF02687 FtsX-like permease family CUC43_05605 PF00005 ABC transporter CUC43_05610 PF06445 GyrI-like small molecule binding domain CUC43_05610 PF12833 Helix-turn-helix domain CUC43_05615 PF13630 SdpI/YhfL protein family CUC43_05615 PF07853 Protein of unknown function (DUF1648) CUC43_05620 PF01022 Bacterial regulatory protein, arsR family CUC43_05625 PF00072 Response regulator receiver domain CUC43_05625 PF00486 Transcriptional regulatory protein, C terminal CUC43_05630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_05635 PF02687 FtsX-like permease family CUC43_05640 PF02687 FtsX-like permease family CUC43_05645 PF00005 ABC transporter CUC43_05650 PF02687 FtsX-like permease family CUC43_05660 PF13977 BetI-type transcriptional repressor, C-terminal CUC43_05660 PF00440 Bacterial regulatory proteins, tetR family CUC43_05670 PF02447 GntP family permease CUC43_05685 PF07071 KDGP aldolase CUC43_05690 PF03841 L-seryl-tRNA selenium transferase CUC43_05695 PF01979 Amidohydrolase family CUC43_05700 PF02557 D-alanyl-D-alanine carboxypeptidase CUC43_05705 PF00512 His Kinase A (phospho-acceptor) domain CUC43_05705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_05710 PF00072 Response regulator receiver domain CUC43_05710 PF00486 Transcriptional regulatory protein, C terminal CUC43_05715 PF13378 Enolase C-terminal domain-like CUC43_05715 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CUC43_05720 PF00501 AMP-binding enzyme CUC43_05720 PF13193 AMP-binding enzyme C-terminal domain CUC43_05730 PF00378 Enoyl-CoA hydratase/isomerase CUC43_05735 PF00561 alpha/beta hydrolase fold CUC43_05740 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CUC43_05740 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CUC43_05740 PF16582 Middle domain of thiamine pyrophosphate CUC43_05745 PF00425 chorismate binding enzyme CUC43_05750 PF01040 UbiA prenyltransferase family CUC43_05755 PF01258 Prokaryotic dksA/traR C4-type zinc finger CUC43_05760 PF00313 'Cold-shock' DNA-binding domain CUC43_05785 PF00343 Carbohydrate phosphorylase CUC43_05790 PF00534 Glycosyl transferases group 1 CUC43_05790 PF08323 Starch synthase catalytic domain CUC43_05795 PF00483 Nucleotidyl transferase CUC43_05800 PF00483 Nucleotidyl transferase CUC43_05805 PF02806 Alpha amylase, C-terminal all-beta domain CUC43_05805 PF00128 Alpha amylase, catalytic domain CUC43_05805 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CUC43_05815 PF13860 FlgD Ig-like domain CUC43_05815 PF02225 PA domain CUC43_05815 PF00082 Subtilase family CUC43_05815 PF05922 Peptidase inhibitor I9 CUC43_05820 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CUC43_05820 PF00056 lactate/malate dehydrogenase, NAD binding domain CUC43_05830 PF08281 Sigma-70, region 4 CUC43_05830 PF04542 Sigma-70 region 2 CUC43_05925 PF05698 Bacterial trigger factor protein (TF) C-terminus CUC43_05925 PF05697 Bacterial trigger factor protein (TF) CUC43_05960 PF02308 MgtC family CUC43_05965 PF07885 Ion channel CUC43_05965 PF02254 TrkA-N domain CUC43_05970 PF08868 YugN-like family CUC43_05975 PF00342 Phosphoglucose isomerase CUC43_05985 PF04070 Domain of unknown function (DUF378) CUC43_05990 PF00575 S1 RNA binding domain CUC43_05995 PF00155 Aminotransferase class I and II CUC43_06000 PF01037 Lrp/AsnC ligand binding domain CUC43_06005 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CUC43_06005 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CUC43_06010 PF00561 alpha/beta hydrolase fold CUC43_06010 PF08386 TAP-like protein CUC43_06020 PF00155 Aminotransferase class I and II CUC43_06030 PF08810 Kinase associated protein B CUC43_06035 PF00929 Exonuclease CUC43_06040 PF03600 Citrate transporter CUC43_06060 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CUC43_06060 PF03129 Anticodon binding domain CUC43_06065 PF03061 Thioesterase superfamily CUC43_06075 PF02632 BioY family CUC43_06080 PF00483 Nucleotidyl transferase CUC43_06085 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CUC43_06085 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CUC43_06085 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CUC43_06085 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CUC43_06090 PF10372 Bacterial membrane-spanning protein N-terminus CUC43_06090 PF02457 DisA bacterial checkpoint controller nucleotide-binding CUC43_06095 PF00883 Cytosol aminopeptidase family, catalytic domain CUC43_06095 PF02789 Cytosol aminopeptidase family, N-terminal domain CUC43_06100 PF06725 3D domain CUC43_06110 PF13344 Haloacid dehalogenase-like hydrolase CUC43_06110 PF00293 NUDIX domain CUC43_06115 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC43_06120 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC43_06125 PF06445 GyrI-like small molecule binding domain CUC43_06145 PF04463 Protein of unknown function (DUF523) CUC43_06165 PF00144 Beta-lactamase CUC43_06175 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CUC43_06175 PF13457 GW (Gly-Tryp) dipeptide domain CUC43_06245 PF00574 Clp protease CUC43_06255 PF03354 Phage Terminase CUC43_06370 PF01381 Helix-turn-helix CUC43_06415 PF01521 Iron-sulphur cluster biosynthesis CUC43_06420 PF01678 Diaminopimelate epimerase CUC43_06425 PF07293 Protein of unknown function (DUF1450) CUC43_06430 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC43_06440 PF00005 ABC transporter CUC43_06440 PF03412 Peptidase C39 family CUC43_06440 PF00664 ABC transporter transmembrane region CUC43_06445 PF03649 Uncharacterised protein family (UPF0014) CUC43_06450 PF03831 PhnA domain CUC43_06450 PF08274 PhnA Zinc-Ribbon CUC43_06470 PF07315 Protein of unknown function (DUF1462) CUC43_06475 PF01106 NifU-like domain CUC43_06490 PF04608 Phosphatidylglycerophosphatase A CUC43_06505 PF02687 FtsX-like permease family CUC43_06505 PF00005 ABC transporter CUC43_06505 PF12704 MacB-like periplasmic core domain CUC43_06520 PF02525 Flavodoxin-like fold CUC43_06530 PF13344 Haloacid dehalogenase-like hydrolase CUC43_06540 PF01934 Protein of unknown function DUF86 CUC43_06545 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CUC43_06565 PF06265 Protein of unknown function (DUF1027) CUC43_06570 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) CUC43_06575 PF07739 TipAS antibiotic-recognition domain CUC43_06575 PF13411 MerR HTH family regulatory protein CUC43_06580 PF10086 YhfC intramembrane metalloprotease CUC43_06600 PF04055 Radical SAM superfamily CUC43_06600 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family CUC43_06605 PF01551 Peptidase family M23 CUC43_06615 PF08827 Domain of unknown function (DUF1805) CUC43_06620 PF02872 5'-nucleotidase, C-terminal domain CUC43_06630 PF03551 Transcriptional regulator PadR-like family CUC43_06635 PF04892 VanZ like family CUC43_06640 PF01458 Uncharacterized protein family (UPF0051) CUC43_06645 PF01592 NifU-like N terminal domain CUC43_06650 PF00266 Aminotransferase class-V CUC43_06655 PF01458 Uncharacterized protein family (UPF0051) CUC43_06660 PF00005 ABC transporter CUC43_06665 PF03180 NLPA lipoprotein CUC43_06670 PF03180 NLPA lipoprotein CUC43_06675 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_06680 PF00005 ABC transporter CUC43_06680 PF09383 NIL domain CUC43_06690 PF00085 Thioredoxin CUC43_06695 PF01751 Toprim domain CUC43_06700 PF01597 Glycine cleavage H-protein CUC43_06705 PF03960 ArsC family CUC43_06745 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CUC43_06745 PF00056 lactate/malate dehydrogenase, NAD binding domain CUC43_06780 PF00440 Bacterial regulatory proteins, tetR family CUC43_06780 PF13305 Tetracyclin repressor-like, C-terminal domain CUC43_06785 PF00753 Metallo-beta-lactamase superfamily CUC43_06795 PF01548 Transposase CUC43_06795 PF02371 Transposase IS116/IS110/IS902 family CUC43_06800 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CUC43_06800 PF02770 Acyl-CoA dehydrogenase, middle domain CUC43_06800 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CUC43_06810 PF00108 Thiolase, N-terminal domain CUC43_06810 PF02803 Thiolase, C-terminal domain CUC43_06815 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CUC43_06815 PF00378 Enoyl-CoA hydratase/isomerase CUC43_06815 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CUC43_06825 PF14115 YuzL-like protein CUC43_06830 PF00768 D-alanyl-D-alanine carboxypeptidase CUC43_06830 PF07943 Penicillin-binding protein 5, C-terminal domain CUC43_06835 PF01619 Proline dehydrogenase CUC43_06840 PF10835 Protein of unknown function (DUF2573) CUC43_06845 PF01910 Thiamine-binding protein CUC43_06850 PF02743 Cache domain CUC43_06850 PF00672 HAMP domain CUC43_06850 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CUC43_06870 PF07690 Major Facilitator Superfamily CUC43_06875 PF13520 Amino acid permease CUC43_06890 PF02096 60Kd inner membrane protein CUC43_06900 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CUC43_06900 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CUC43_06945 PF09335 SNARE associated Golgi protein CUC43_06960 PF00072 Response regulator receiver domain CUC43_06960 PF00486 Transcriptional regulatory protein, C terminal CUC43_06965 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_06965 PF00512 His Kinase A (phospho-acceptor) domain CUC43_06965 PF00989 PAS fold CUC43_06965 PF16736 Single Cache-like CUC43_06975 PF09334 tRNA synthetases class I (M) CUC43_06975 PF08264 Anticodon-binding domain of tRNA CUC43_06985 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CUC43_06985 PF02743 Cache domain CUC43_06985 PF00672 HAMP domain CUC43_06990 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CUC43_06990 PF00672 HAMP domain CUC43_06990 PF02743 Cache domain CUC43_06995 PF01883 Iron-sulfur cluster assembly protein CUC43_07000 PF01447 Thermolysin metallopeptidase, catalytic domain CUC43_07000 PF07504 Fungalysin/Thermolysin Propeptide Motif CUC43_07000 PF02868 Thermolysin metallopeptidase, alpha-helical domain CUC43_07000 PF03413 Peptidase propeptide and YPEB domain CUC43_07005 PF02678 Pirin CUC43_07005 PF17954 Quercetinase C-terminal cupin domain CUC43_07010 PF01047 MarR family CUC43_07020 PF09335 SNARE associated Golgi protein CUC43_07025 PF00999 Sodium/hydrogen exchanger family CUC43_07030 PF02080 TrkA-C domain CUC43_07040 PF01235 Sodium:alanine symporter family CUC43_07045 PF00210 Ferritin-like domain CUC43_07060 PF03641 Possible lysine decarboxylase CUC43_07070 PF00210 Ferritin-like domain CUC43_07080 PF07662 Na+ dependent nucleoside transporter C-terminus CUC43_07080 PF01773 Na+ dependent nucleoside transporter N-terminus CUC43_07085 PF01773 Na+ dependent nucleoside transporter N-terminus CUC43_07085 PF07662 Na+ dependent nucleoside transporter C-terminus CUC43_07090 PF01235 Sodium:alanine symporter family CUC43_07095 PF01235 Sodium:alanine symporter family CUC43_07100 PF13460 NAD(P)H-binding CUC43_07120 PF00248 Aldo/keto reductase family CUC43_07125 PF07690 Major Facilitator Superfamily CUC43_07130 PF01638 HxlR-like helix-turn-helix CUC43_07135 PF07849 Protein of unknown function (DUF1641) CUC43_07140 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC43_07145 PF00579 tRNA synthetases class I (W and Y) CUC43_07145 PF01479 S4 domain CUC43_07150 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain CUC43_07150 PF01565 FAD binding domain CUC43_07160 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CUC43_07160 PF17202 Single cache domain 3 CUC43_07160 PF00672 HAMP domain CUC43_07170 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CUC43_07175 PF02537 CrcB-like protein, Camphor Resistance (CrcB) CUC43_07190 PF13302 Acetyltransferase (GNAT) domain CUC43_07195 PF06146 Phosphate-starvation-inducible E CUC43_07210 PF01047 MarR family CUC43_07220 PF00005 ABC transporter CUC43_07225 PF01032 FecCD transport family CUC43_07230 PF01032 FecCD transport family CUC43_07240 PF00486 Transcriptional regulatory protein, C terminal CUC43_07240 PF00072 Response regulator receiver domain CUC43_07250 PF01668 SmpB protein CUC43_07260 PF00575 S1 RNA binding domain CUC43_07260 PF08206 Ribonuclease B OB domain CUC43_07260 PF00773 RNB domain CUC43_07260 PF17876 Cold shock domain CUC43_07265 PF12146 Serine aminopeptidase, S33 CUC43_07270 PF03840 Preprotein translocase SecG subunit CUC43_07275 PF04172 LrgB-like family CUC43_07280 PF03788 LrgA family CUC43_07285 PF01156 Inosine-uridine preferring nucleoside hydrolase CUC43_07295 PF01676 Metalloenzyme superfamily CUC43_07295 PF06415 BPG-independent PGAM N-terminus (iPGM_N) CUC43_07300 PF00121 Triosephosphate isomerase CUC43_07305 PF00162 Phosphoglycerate kinase CUC43_07310 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain CUC43_07310 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain CUC43_07315 PF04198 Putative sugar-binding domain CUC43_07325 PF04963 Sigma-54 factor, core binding domain CUC43_07325 PF00309 Sigma-54 factor, Activator interacting domain (AID) CUC43_07325 PF04552 Sigma-54, DNA binding domain CUC43_07340 PF13732 Domain of unknown function (DUF4162) CUC43_07340 PF00005 ABC transporter CUC43_07345 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_07345 PF07730 Histidine kinase CUC43_07350 PF00196 Bacterial regulatory proteins, luxR family CUC43_07350 PF00072 Response regulator receiver domain CUC43_07370 PF03862 SpoVAC/SpoVAEB sporulation membrane protein CUC43_07375 PF07451 Stage V sporulation protein AD (SpoVAD) CUC43_07380 PF03862 SpoVAC/SpoVAEB sporulation membrane protein CUC43_07390 PF04239 Protein of unknown function (DUF421) CUC43_07395 PF00574 Clp protease CUC43_07410 PF00381 PTS HPr component phosphorylation site CUC43_07415 PF02650 WhiA C-terminal HTH domain CUC43_07415 PF14527 WhiA LAGLIDADG-like domain CUC43_07415 PF10298 WhiA N-terminal LAGLIDADG-like domain CUC43_07420 PF01933 Uncharacterised protein family UPF0052 CUC43_07425 PF03668 P-loop ATPase protein family CUC43_07430 PF00293 NUDIX domain CUC43_07440 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC43_07450 PF14602 Hexapeptide repeat of succinyl-transferase CUC43_07455 PF13419 Haloacid dehalogenase-like hydrolase CUC43_07460 PF01790 Prolipoprotein diacylglyceryl transferase CUC43_07465 PF07475 HPr Serine kinase C-terminal domain CUC43_07465 PF02603 HPr Serine kinase N terminus CUC43_07470 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV CUC43_07480 PF17755 UvrA DNA-binding domain CUC43_07480 PF17760 UvrA interaction domain CUC43_07480 PF00005 ABC transporter CUC43_07485 PF12344 Ultra-violet resistance protein B CUC43_07485 PF17757 UvrB interaction domain CUC43_07485 PF02151 UvrB/uvrC motif CUC43_07485 PF00271 Helicase conserved C-terminal domain CUC43_07485 PF04851 Type III restriction enzyme, res subunit CUC43_07500 PF13411 MerR HTH family regulatory protein CUC43_07500 PF07739 TipAS antibiotic-recognition domain CUC43_07530 PF03601 Conserved hypothetical protein 698 CUC43_07535 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC43_07535 PF03466 LysR substrate binding domain CUC43_07540 PF09278 MerR, DNA binding CUC43_07540 PF00376 MerR family regulatory protein CUC43_07545 PF03358 NADPH-dependent FMN reductase CUC43_07555 PF01906 Putative heavy-metal-binding CUC43_07560 PF00005 ABC transporter CUC43_07560 PF00664 ABC transporter transmembrane region CUC43_07570 PF17820 PDZ domain CUC43_07575 PF01471 Putative peptidoglycan binding domain CUC43_07575 PF03572 Peptidase family S41 CUC43_07575 PF17820 PDZ domain CUC43_07580 PF02687 FtsX-like permease family CUC43_07580 PF18075 FtsX extracellular domain CUC43_07585 PF00005 ABC transporter CUC43_07590 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CUC43_07600 PF07517 SecA DEAD-like domain CUC43_07600 PF02810 SEC-C motif CUC43_07600 PF07516 SecA Wing and Scaffold domain CUC43_07600 PF01043 SecA preprotein cross-linking domain CUC43_07605 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus CUC43_07605 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein CUC43_07610 PF00313 'Cold-shock' DNA-binding domain CUC43_07620 PF00271 Helicase conserved C-terminal domain CUC43_07620 PF04851 Type III restriction enzyme, res subunit CUC43_07625 PF01476 LysM domain CUC43_07625 PF00877 NlpC/P60 family CUC43_07630 PF01638 HxlR-like helix-turn-helix CUC43_07640 PF02645 Uncharacterised protein, DegV family COG1307 CUC43_07645 PF01205 Uncharacterized protein family UPF0029 CUC43_07645 PF09186 Domain of unknown function (DUF1949) CUC43_07650 PF03816 Cell envelope-related transcriptional attenuator domain CUC43_07655 PF02350 UDP-N-acetylglucosamine 2-epimerase CUC43_07660 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CUC43_07660 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CUC43_07660 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CUC43_07665 PF00953 Glycosyl transferase family 4 CUC43_07675 PF03610 PTS system fructose IIA component CUC43_07675 PF00874 PRD domain CUC43_07675 PF00158 Sigma-54 interaction domain CUC43_07685 PF02417 Chromate transporter CUC43_07690 PF04794 YdjC-like protein CUC43_07695 PF02056 Family 4 glycosyl hydrolase CUC43_07695 PF11975 Family 4 glycosyl hydrolase C-terminal domain CUC43_07700 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CUC43_07705 PF02378 Phosphotransferase system, EIIC CUC43_07710 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CUC43_07720 PF02675 S-adenosylmethionine decarboxylase CUC43_07725 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CUC43_07730 PF02378 Phosphotransferase system, EIIC CUC43_07735 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CUC43_07740 PF00375 Sodium:dicarboxylate symporter family CUC43_07745 PF01548 Transposase CUC43_07745 PF02371 Transposase IS116/IS110/IS902 family CUC43_07760 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CUC43_07770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC43_07770 PF03466 LysR substrate binding domain CUC43_07785 PF01654 Cytochrome bd terminal oxidase subunit I CUC43_07790 PF02322 Cytochrome bd terminal oxidase subunit II CUC43_07795 PF02040 Arsenical pump membrane protein CUC43_07800 PF13667 ThiC-associated domain CUC43_07800 PF01964 Radical SAM ThiC family CUC43_07805 PF02652 L-lactate permease CUC43_07815 PF09988 Uncharacterized metal-binding protein (DUF2227) CUC43_07830 PF00884 Sulfatase CUC43_07840 PF01063 Amino-transferase class IV CUC43_07845 PF00877 NlpC/P60 family CUC43_07845 PF01476 LysM domain CUC43_07850 PF01773 Na+ dependent nucleoside transporter N-terminus CUC43_07850 PF07662 Na+ dependent nucleoside transporter C-terminus CUC43_07870 PF02028 BCCT, betaine/carnitine/choline family transporter CUC43_07880 PF01476 LysM domain CUC43_07880 PF06725 3D domain CUC43_07905 PF04434 SWIM zinc finger CUC43_07910 PF12419 SNF2 Helicase protein CUC43_07910 PF00271 Helicase conserved C-terminal domain CUC43_07910 PF00176 SNF2 family N-terminal domain CUC43_07955 PF04542 Sigma-70 region 2 CUC43_07955 PF04545 Sigma-70, region 4 CUC43_07960 PF04893 Yip1 domain CUC43_07965 PF04893 Yip1 domain CUC43_07970 PF02687 FtsX-like permease family CUC43_07970 PF12704 MacB-like periplasmic core domain CUC43_07975 PF00005 ABC transporter CUC43_07985 PF07690 Major Facilitator Superfamily CUC43_08000 PF16736 Single Cache-like CUC43_08000 PF00512 His Kinase A (phospho-acceptor) domain CUC43_08000 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_08000 PF00989 PAS fold CUC43_08005 PF00486 Transcriptional regulatory protein, C terminal CUC43_08005 PF00072 Response regulator receiver domain CUC43_08010 PF16363 GDP-mannose 4,6 dehydratase CUC43_08020 PF03816 Cell envelope-related transcriptional attenuator domain CUC43_08030 PF07977 FabA-like domain CUC43_08035 PF02350 UDP-N-acetylglucosamine 2-epimerase CUC43_08040 PF08239 Bacterial SH3 domain CUC43_08040 PF00005 ABC transporter CUC43_08045 PF01061 ABC-2 type transporter CUC43_08050 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CUC43_08050 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CUC43_08050 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CUC43_08065 PF00535 Glycosyl transferase family 2 CUC43_08090 PF12116 Stage III sporulation protein D CUC43_08105 PF01551 Peptidase family M23 CUC43_08115 PF00005 ABC transporter CUC43_08120 PF00072 Response regulator receiver domain CUC43_08120 PF04397 LytTr DNA-binding domain CUC43_08125 PF00501 AMP-binding enzyme CUC43_08125 PF13193 AMP-binding enzyme C-terminal domain CUC43_08130 PF08486 Stage II sporulation protein CUC43_08135 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CUC43_08145 PF06612 Protein of unknown function (DUF1146) CUC43_08150 PF00361 Proton-conducting membrane transporter CUC43_08155 PF00361 Proton-conducting membrane transporter CUC43_08160 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus CUC43_08160 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CUC43_08160 PF00361 Proton-conducting membrane transporter CUC43_08165 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L CUC43_08170 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 CUC43_08180 PF00146 NADH dehydrogenase CUC43_08185 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit CUC43_08190 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit CUC43_08195 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit CUC43_08200 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 CUC43_08205 PF03707 Bacterial signalling protein N terminal repeat CUC43_08205 PF00563 EAL domain CUC43_08205 PF00990 Diguanylate cyclase, GGDEF domain CUC43_08220 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain CUC43_08220 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain CUC43_08225 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CUC43_08225 PF02874 ATP synthase alpha/beta family, beta-barrel domain CUC43_08230 PF00231 ATP synthase CUC43_08235 PF02874 ATP synthase alpha/beta family, beta-barrel domain CUC43_08235 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CUC43_08235 PF00306 ATP synthase alpha/beta chain, C terminal domain CUC43_08240 PF00213 ATP synthase delta (OSCP) subunit CUC43_08245 PF00430 ATP synthase B/B' CF(0) CUC43_08250 PF00137 ATP synthase subunit C CUC43_08255 PF00119 ATP synthase A chain CUC43_08260 PF03899 ATP synthase I chain CUC43_08280 PF00464 Serine hydroxymethyltransferase CUC43_08285 PF04260 Protein of unknown function (DUF436) CUC43_08290 PF02502 Ribose/Galactose Isomerase CUC43_08295 PF01451 Low molecular weight phosphotyrosine protein phosphatase CUC43_08305 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CUC43_08310 PF07681 DoxX CUC43_08315 PF01613 Flavin reductase like domain CUC43_08325 PF02659 Putative manganese efflux pump CUC43_08330 PF03481 Putative GTP-binding controlling metal-binding CUC43_08330 PF01300 Telomere recombination CUC43_08340 PF09551 Stage II sporulation protein R (spore_II_R) CUC43_08345 PF17827 PrmC N-terminal domain CUC43_08345 PF13847 Methyltransferase domain CUC43_08350 PF03462 PCRF domain CUC43_08350 PF00472 RF-1 domain CUC43_08355 PF00265 Thymidine kinase CUC43_08360 PF01197 Ribosomal protein L31 CUC43_08370 PF07497 Rho termination factor, RNA-binding domain CUC43_08370 PF07498 Rho termination factor, N-terminal domain CUC43_08370 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CUC43_08375 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded CUC43_08385 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CUC43_08390 PF01116 Fructose-bisphosphate aldolase class-II CUC43_08395 PF00072 Response regulator receiver domain CUC43_08400 PF10740 Domain of unknown function (DUF2529) CUC43_08405 PF00117 Glutamine amidotransferase class-I CUC43_08405 PF06418 CTP synthase N-terminus CUC43_08410 PF05066 HB1, ASXL, restriction endonuclease HTH domain CUC43_08420 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CUC43_08420 PF02770 Acyl-CoA dehydrogenase, middle domain CUC43_08420 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CUC43_08425 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CUC43_08425 PF02770 Acyl-CoA dehydrogenase, middle domain CUC43_08425 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CUC43_08430 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain CUC43_08430 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain CUC43_08435 PF02803 Thiolase, C-terminal domain CUC43_08435 PF00108 Thiolase, N-terminal domain CUC43_08440 PF02754 Cysteine-rich domain CUC43_08440 PF13183 4Fe-4S dicluster domain CUC43_08445 PF13091 PLD-like domain CUC43_08450 PF03851 UV-endonuclease UvdE CUC43_08455 PF00563 EAL domain CUC43_08455 PF00990 Diguanylate cyclase, GGDEF domain CUC43_08455 PF03707 Bacterial signalling protein N terminal repeat CUC43_08480 PF00072 Response regulator receiver domain CUC43_08480 PF00196 Bacterial regulatory proteins, luxR family CUC43_08485 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_08485 PF07730 Histidine kinase CUC43_08495 PF00005 ABC transporter CUC43_08500 PF00557 Metallopeptidase family M24 CUC43_08510 PF04389 Peptidase family M28 CUC43_08510 PF02225 PA domain CUC43_08535 PF05746 DALR anticodon binding domain CUC43_08535 PF03485 Arginyl tRNA synthetase N terminal domain CUC43_08535 PF00750 tRNA synthetases class I (R) CUC43_08540 PF09148 Domain of unknown function (DUF1934) CUC43_08545 PF17676 LD-carboxypeptidase C-terminal domain CUC43_08545 PF02016 LD-carboxypeptidase N-terminal domain CUC43_08560 PF00491 Arginase family CUC43_08565 PF17284 Spermidine synthase tetramerisation domain CUC43_08570 PF07690 Major Facilitator Superfamily CUC43_08575 PF13411 MerR HTH family regulatory protein CUC43_08580 PF03009 Glycerophosphoryl diester phosphodiesterase family CUC43_08585 PF00912 Transglycosylase CUC43_08585 PF00905 Penicillin binding protein transpeptidase domain CUC43_08590 PF08741 YwhD family CUC43_08595 PF02163 Peptidase family M50 CUC43_08600 PF01361 Tautomerase enzyme CUC43_08605 PF01966 HD domain CUC43_08610 PF01497 Periplasmic binding protein CUC43_08615 PF00005 ABC transporter CUC43_08620 PF01032 FecCD transport family CUC43_08625 PF01032 FecCD transport family CUC43_08630 PF07293 Protein of unknown function (DUF1450) CUC43_08645 PF03099 Biotin/lipoate A/B protein ligase family CUC43_08650 PF01515 Phosphate acetyl/butaryl transferase CUC43_08660 PF07943 Penicillin-binding protein 5, C-terminal domain CUC43_08660 PF00768 D-alanyl-D-alanine carboxypeptidase CUC43_08665 PF07486 Cell Wall Hydrolase CUC43_08670 PF09671 Spore coat protein (Spore_GerQ) CUC43_08675 PF04241 Protein of unknown function (DUF423) CUC43_08685 PF02254 TrkA-N domain CUC43_08685 PF07885 Ion channel CUC43_08690 PF00860 Permease family CUC43_08700 PF12823 Domain of unknown function (DUF3817) CUC43_08705 PF03167 Uracil DNA glycosylase superfamily CUC43_08710 PF12679 ABC-2 family transporter protein CUC43_08715 PF00005 ABC transporter CUC43_08720 PF13472 GDSL-like Lipase/Acylhydrolase family CUC43_08725 PF00356 Bacterial regulatory proteins, lacI family CUC43_08725 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CUC43_08735 PF01842 ACT domain CUC43_08735 PF00742 Homoserine dehydrogenase CUC43_08735 PF03447 Homoserine dehydrogenase, NAD binding domain CUC43_08740 PF04204 Homoserine O-succinyltransferase CUC43_08745 PF01053 Cys/Met metabolism PLP-dependent enzyme CUC43_08755 PF13419 Haloacid dehalogenase-like hydrolase CUC43_08765 PF02525 Flavodoxin-like fold CUC43_08775 PF00072 Response regulator receiver domain CUC43_08775 PF00196 Bacterial regulatory proteins, luxR family CUC43_08780 PF07730 Histidine kinase CUC43_08780 PF13185 GAF domain CUC43_08785 PF08543 Phosphomethylpyrimidine kinase CUC43_08790 PF00990 Diguanylate cyclase, GGDEF domain CUC43_08790 PF07694 5TMR of 5TMR-LYT CUC43_08795 PF04328 Selenoprotein, putative CUC43_08815 PF00072 Response regulator receiver domain CUC43_08815 PF04397 LytTr DNA-binding domain CUC43_08820 PF07690 Major Facilitator Superfamily CUC43_08825 PF03808 Glycosyl transferase WecB/TagA/CpsF family CUC43_08840 PF03458 UPF0126 domain CUC43_08845 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CUC43_08855 PF03061 Thioesterase superfamily CUC43_08870 PF00535 Glycosyl transferase family 2 CUC43_08875 PF12848 ABC transporter CUC43_08875 PF00005 ABC transporter CUC43_08900 PF00535 Glycosyl transferase family 2 CUC43_08905 PF00440 Bacterial regulatory proteins, tetR family CUC43_08910 PF00873 AcrB/AcrD/AcrF family CUC43_08915 PF01641 SelR domain CUC43_08915 PF01625 Peptide methionine sulfoxide reductase CUC43_08920 PF01594 AI-2E family transporter CUC43_08925 PF04172 LrgB-like family CUC43_08930 PF03788 LrgA family CUC43_08935 PF00072 Response regulator receiver domain CUC43_08935 PF04397 LytTr DNA-binding domain CUC43_08940 PF13492 GAF domain CUC43_08940 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_08940 PF07694 5TMR of 5TMR-LYT CUC43_08940 PF06580 Histidine kinase CUC43_08945 PF07690 Major Facilitator Superfamily CUC43_08950 PF02028 BCCT, betaine/carnitine/choline family transporter CUC43_08955 PF02898 Nitric oxide synthase, oxygenase domain CUC43_08965 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CUC43_08965 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CUC43_08975 PF02293 AmiS/UreI family transporter CUC43_08985 PF16363 GDP-mannose 4,6 dehydratase CUC43_08990 PF03006 Haemolysin-III related CUC43_09005 PF03880 DbpA RNA binding domain CUC43_09005 PF00271 Helicase conserved C-terminal domain CUC43_09005 PF00270 DEAD/DEAH box helicase CUC43_09015 PF00478 IMP dehydrogenase / GMP reductase domain CUC43_09020 PF08439 Oligopeptidase F CUC43_09020 PF01432 Peptidase family M3 CUC43_09035 PF02590 Predicted SPOUT methyltransferase CUC43_09045 PF13180 PDZ domain CUC43_09050 PF00753 Metallo-beta-lactamase superfamily CUC43_09055 PF09648 YycH protein CUC43_09060 PF07435 YycH protein CUC43_09065 PF13426 PAS domain CUC43_09065 PF00512 His Kinase A (phospho-acceptor) domain CUC43_09065 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_09065 PF00672 HAMP domain CUC43_09070 PF00486 Transcriptional regulatory protein, C terminal CUC43_09070 PF00072 Response regulator receiver domain CUC43_09095 PF00709 Adenylosuccinate synthetase CUC43_09100 PF00772 DnaB-like helicase N terminal domain CUC43_09100 PF03796 DnaB-like helicase C terminal domain CUC43_09105 PF01281 Ribosomal protein L9, N-terminal domain CUC43_09105 PF03948 Ribosomal protein L9, C-terminal domain CUC43_09110 PF01368 DHH family CUC43_09110 PF02272 DHHA1 domain CUC43_09115 PF09991 Predicted membrane protein (DUF2232) CUC43_09120 PF01084 Ribosomal protein S18 CUC43_09125 PF00436 Single-strand binding protein family CUC43_09130 PF01250 Ribosomal protein S6 CUC43_09135 PF06071 Protein of unknown function (DUF933) CUC43_09135 PF01926 50S ribosome-binding GTPase CUC43_09140 PF06107 Bacterial protein of unknown function (DUF951) CUC43_09145 PF00924 Mechanosensitive ion channel CUC43_09150 PF06866 Protein of unknown function (DUF1256) CUC43_09155 PF17762 HTH domain found in ParB protein CUC43_09155 PF02195 ParB-like nuclease domain CUC43_09160 PF13614 AAA domain CUC43_09165 PF02195 ParB-like nuclease domain CUC43_09165 PF17762 HTH domain found in ParB protein CUC43_09170 PF02527 rRNA small subunit methyltransferase G CUC43_09175 PF01134 Glucose inhibited division protein A CUC43_09175 PF13932 GidA associated domain CUC43_09180 PF12631 MnmE helical domain CUC43_09180 PF10396 GTP-binding protein TrmE N-terminus CUC43_09180 PF01926 50S ribosome-binding GTPase CUC43_09185 PF14804 Jag N-terminus CUC43_09185 PF01424 R3H domain CUC43_09190 PF02096 60Kd inner membrane protein CUC43_09195 PF00825 Ribonuclease P CUC43_09200 PF00468 Ribosomal protein L34 CUC43_09205 PF08299 Bacterial dnaA protein helix-turn-helix CUC43_09205 PF11638 DnaA N-terminal domain CUC43_09205 PF00308 Bacterial dnaA protein CUC43_09210 PF02768 DNA polymerase III beta subunit, C-terminal domain CUC43_09210 PF02767 DNA polymerase III beta subunit, central domain CUC43_09210 PF00712 DNA polymerase III beta subunit, N-terminal domain CUC43_09220 PF02463 RecF/RecN/SMC N terminal domain CUC43_09225 PF01751 Toprim domain CUC43_09225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_09225 PF00986 DNA gyrase B subunit, carboxyl terminus CUC43_09225 PF00204 DNA gyrase B CUC43_09230 PF03989 DNA gyrase C-terminal domain, beta-propeller CUC43_09230 PF00521 DNA gyrase/topoisomerase IV, subunit A CUC43_09260 PF14175 YaaC-like Protein CUC43_09265 PF00478 IMP dehydrogenase / GMP reductase domain CUC43_09265 PF00571 CBS domain CUC43_09270 PF07943 Penicillin-binding protein 5, C-terminal domain CUC43_09270 PF00768 D-alanyl-D-alanine carboxypeptidase CUC43_09275 PF01680 SOR/SNZ family CUC43_09280 PF01174 SNO glutamine amidotransferase family CUC43_09285 PF02403 Seryl-tRNA synthetase N-terminal domain CUC43_09285 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CUC43_09300 PF01712 Deoxynucleoside kinase CUC43_09305 PF01712 Deoxynucleoside kinase CUC43_09310 PF00857 Isochorismatase family CUC43_09320 PF14437 MafB19-like deaminase CUC43_09330 PF12169 DNA polymerase III subunits gamma and tau domain III CUC43_09335 PF02575 YbaB/EbfC DNA-binding family CUC43_09340 PF13662 Toprim domain CUC43_09340 PF02132 RecR protein CUC43_09345 PF10704 Protein of unknown function (DUF2508) CUC43_09350 PF07441 SigmaK-factor processing regulatory protein BofA CUC43_09385 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain CUC43_09385 PF01276 Orn/Lys/Arg decarboxylase, major domain CUC43_09390 PF02223 Thymidylate kinase CUC43_09395 PF09115 DNA polymerase III, delta subunit, C terminal CUC43_09400 PF04468 PSP1 C-terminal conserved region CUC43_09405 PF06156 Initiation control protein YabA CUC43_09410 PF05175 Methyltransferase small domain CUC43_09415 PF01541 GIY-YIG catalytic domain CUC43_09420 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CUC43_09425 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CUC43_09425 PF18277 AbrB C-terminal domain CUC43_09430 PF08264 Anticodon-binding domain of tRNA CUC43_09430 PF09334 tRNA synthetases class I (M) CUC43_09430 PF01588 Putative tRNA binding domain CUC43_09435 PF01026 TatD related DNase CUC43_09440 PF13331 Domain of unknown function (DUF4093) CUC43_09440 PF13662 Toprim domain CUC43_09445 PF00398 Ribosomal RNA adenine dimethylase CUC43_09450 PF05582 YabG peptidase U57 CUC43_09455 PF06257 Biofilm formation stimulator VEG CUC43_09460 PF00269 Small, acid-soluble spore proteins, alpha/beta type CUC43_09465 PF00288 GHMP kinases N terminal domain CUC43_09465 PF08544 GHMP kinases C terminal CUC43_09470 PF09182 Bacterial purine repressor, N-terminal CUC43_09470 PF00156 Phosphoribosyl transferase domain CUC43_09480 PF01042 Endoribonuclease L-PSP CUC43_09485 PF04026 SpoVG CUC43_09490 PF00132 Bacterial transferase hexapeptide (six repeats) CUC43_09490 PF00483 Nucleotidyl transferase CUC43_09495 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase CUC43_09495 PF14572 Phosphoribosyl synthetase-associated domain CUC43_09500 PF01195 Peptidyl-tRNA hydrolase CUC43_09510 PF03461 TRCF domain CUC43_09510 PF00271 Helicase conserved C-terminal domain CUC43_09510 PF00270 DEAD/DEAH box helicase CUC43_09510 PF17757 UvrB interaction domain CUC43_09510 PF02559 CarD-like/TRCF domain CUC43_09515 PF15714 Stage V sporulation protein T C-terminal, transcription factor CUC43_09515 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CUC43_09520 PF14667 Polysaccharide biosynthesis C-terminal domain CUC43_09520 PF01943 Polysaccharide biosynthesis protein CUC43_09525 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CUC43_09525 PF03819 MazG nucleotide pyrophosphohydrolase domain CUC43_09530 PF01479 S4 domain CUC43_09535 PF07873 YabP family CUC43_09540 PF09578 Spore cortex protein YabQ (Spore_YabQ) CUC43_09550 PF00575 S1 RNA binding domain CUC43_09565 PF07228 Stage II sporulation protein E (SpoIIE) CUC43_09570 PF11734 TilS substrate C-terminal domain CUC43_09570 PF09179 TilS substrate binding domain CUC43_09570 PF01171 PP-loop family CUC43_09580 PF01434 Peptidase family M41 CUC43_09580 PF06480 FtsH Extracellular CUC43_09580 PF17862 AAA+ lid domain CUC43_09580 PF00004 ATPase family associated with various cellular activities (AAA) CUC43_09585 PF03309 Type III pantothenate kinase CUC43_09590 PF01430 Hsp33 protein CUC43_09595 PF00291 Pyridoxal-phosphate dependent enzyme CUC43_09600 PF00425 chorismate binding enzyme CUC43_09600 PF04715 Anthranilate synthase component I, N terminal region CUC43_09605 PF00117 Glutamine amidotransferase class-I CUC43_09610 PF01063 Amino-transferase class IV CUC43_09615 PF00809 Pterin binding enzyme CUC43_09620 PF02152 Dihydroneopterin aldolase CUC43_09625 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) CUC43_09630 PF01381 Helix-turn-helix CUC43_09635 PF01207 Dihydrouridine synthase (Dus) CUC43_09640 PF00152 tRNA synthetases class II (D, K and N) CUC43_09640 PF01336 OB-fold nucleic acid binding domain CUC43_09720 PF17727 CtsR C-terminal dimerization domain CUC43_09720 PF05848 CtsR N-terminal HTH domain CUC43_09725 PF02151 UvrB/uvrC motif CUC43_09730 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain CUC43_09735 PF00004 ATPase family associated with various cellular activities (AAA) CUC43_09735 PF07724 AAA domain (Cdc48 subfamily) CUC43_09735 PF17871 AAA lid domain CUC43_09735 PF10431 C-terminal, D2-small domain, of ClpB protein CUC43_09735 PF02861 Clp amino terminal domain, pathogenicity island component CUC43_09740 PF18073 Rubredoxin metal binding domain CUC43_09745 PF10635 DisA bacterial checkpoint controller linker region CUC43_09745 PF02457 DisA bacterial checkpoint controller nucleotide-binding CUC43_09755 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase CUC43_09760 PF02542 YgbB family CUC43_09765 PF00749 tRNA synthetases class I (E and Q), catalytic domain CUC43_09770 PF06426 Serine acetyltransferase, N-terminal CUC43_09770 PF00132 Bacterial transferase hexapeptide (six repeats) CUC43_09775 PF01406 tRNA synthetases class I (C) catalytic domain CUC43_09775 PF09190 DALR domain CUC43_09780 PF00636 Ribonuclease III domain CUC43_09785 PF08032 RNA 2'-O ribose methyltransferase substrate binding CUC43_09785 PF00588 SpoU rRNA Methylase family CUC43_09790 PF05991 YacP-like NYN domain CUC43_09795 PF04542 Sigma-70 region 2 CUC43_09795 PF08281 Sigma-70, region 4 CUC43_09800 PF00471 Ribosomal protein L33 CUC43_09805 PF00584 SecE/Sec61-gamma subunits of protein translocation complex CUC43_09810 PF02357 Transcription termination factor nusG CUC43_09810 PF00467 KOW motif CUC43_09815 PF00298 Ribosomal protein L11, RNA binding domain CUC43_09815 PF03946 Ribosomal protein L11, N-terminal domain CUC43_09820 PF00687 Ribosomal protein L1p/L10e family CUC43_09825 PF00466 Ribosomal protein L10 CUC43_09830 PF00542 Ribosomal protein L7/L12 C-terminal domain CUC43_09830 PF16320 Ribosomal protein L7/L12 dimerisation domain CUC43_09835 PF05175 Methyltransferase small domain CUC43_09840 PF10385 RNA polymerase beta subunit external 1 domain CUC43_09840 PF04561 RNA polymerase Rpb2, domain 2 CUC43_09840 PF00562 RNA polymerase Rpb2, domain 6 CUC43_09840 PF04565 RNA polymerase Rpb2, domain 3 CUC43_09840 PF04563 RNA polymerase beta subunit CUC43_09840 PF04560 RNA polymerase Rpb2, domain 7 CUC43_09845 PF04997 RNA polymerase Rpb1, domain 1 CUC43_09845 PF00623 RNA polymerase Rpb1, domain 2 CUC43_09845 PF04998 RNA polymerase Rpb1, domain 5 CUC43_09845 PF05000 RNA polymerase Rpb1, domain 4 CUC43_09845 PF04983 RNA polymerase Rpb1, domain 3 CUC43_09850 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family CUC43_09855 PF00164 Ribosomal protein S12/S23 CUC43_09860 PF00177 Ribosomal protein S7p/S5e CUC43_09865 PF03764 Elongation factor G, domain IV CUC43_09865 PF14492 Elongation Factor G, domain II CUC43_09865 PF00009 Elongation factor Tu GTP binding domain CUC43_09865 PF03144 Elongation factor Tu domain 2 CUC43_09865 PF00679 Elongation factor G C-terminus CUC43_09870 PF00009 Elongation factor Tu GTP binding domain CUC43_09870 PF03143 Elongation factor Tu C-terminal domain CUC43_09870 PF03144 Elongation factor Tu domain 2 CUC43_09880 PF00338 Ribosomal protein S10p/S20e CUC43_09885 PF00297 Ribosomal protein L3 CUC43_09890 PF00573 Ribosomal protein L4/L1 family CUC43_09895 PF00276 Ribosomal protein L23 CUC43_09900 PF00181 Ribosomal Proteins L2, RNA binding domain CUC43_09900 PF03947 Ribosomal Proteins L2, C-terminal domain CUC43_09905 PF00203 Ribosomal protein S19 CUC43_09910 PF00237 Ribosomal protein L22p/L17e CUC43_09915 PF07650 KH domain CUC43_09915 PF00189 Ribosomal protein S3, C-terminal domain CUC43_09920 PF00252 Ribosomal protein L16p/L10e CUC43_09925 PF00831 Ribosomal L29 protein CUC43_09930 PF00366 Ribosomal protein S17 CUC43_09935 PF00238 Ribosomal protein L14p/L23e CUC43_09940 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 CUC43_09940 PF00467 KOW motif CUC43_09945 PF00281 Ribosomal protein L5 CUC43_09945 PF00673 ribosomal L5P family C-terminus CUC43_09950 PF00253 Ribosomal protein S14p/S29e CUC43_09955 PF00410 Ribosomal protein S8 CUC43_09960 PF00347 Ribosomal protein L6 CUC43_09965 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast CUC43_09970 PF03719 Ribosomal protein S5, C-terminal domain CUC43_09970 PF00333 Ribosomal protein S5, N-terminal domain CUC43_09975 PF00327 Ribosomal protein L30p/L7e CUC43_09980 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A CUC43_09985 PF00344 SecY translocase CUC43_09990 PF05191 Adenylate kinase, active site lid CUC43_09995 PF00557 Metallopeptidase family M24 CUC43_10000 PF01176 Translation initiation factor 1A / IF-1 CUC43_10005 PF00444 Ribosomal protein L36 CUC43_10010 PF00416 Ribosomal protein S13/S18 CUC43_10015 PF00411 Ribosomal protein S11 CUC43_10020 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain CUC43_10020 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain CUC43_10020 PF01000 RNA polymerase Rpb3/RpoA insert domain CUC43_10025 PF01196 Ribosomal protein L17 CUC43_10030 PF00005 ABC transporter CUC43_10035 PF00005 ABC transporter CUC43_10040 PF02361 Cobalt transport protein CUC43_10045 PF01416 tRNA pseudouridine synthase CUC43_10050 PF00572 Ribosomal protein L13 CUC43_10055 PF00380 Ribosomal protein S9/S16 CUC43_10065 PF01520 N-acetylmuramoyl-L-alanine amidase CUC43_10070 PF10609 NUBPL iron-transfer P-loop NTPase CUC43_10075 PF17898 Spore germination GerD central core domain CUC43_10080 PF14089 KinB-signalling pathway activation in sporulation CUC43_10085 PF01522 Polysaccharide deacetylase CUC43_10160 PF02595 Glycerate kinase family CUC43_10165 PF00491 Arginase family CUC43_10170 PF02457 DisA bacterial checkpoint controller nucleotide-binding CUC43_10175 PF07949 YbbR-like protein CUC43_10180 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain CUC43_10180 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I CUC43_10180 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II CUC43_10180 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III CUC43_10190 PF01380 SIS domain CUC43_10195 PF00561 alpha/beta hydrolase fold CUC43_10200 PF07729 FCD domain CUC43_10200 PF00392 Bacterial regulatory proteins, gntR family CUC43_10205 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CUC43_10205 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CUC43_10210 PF02447 GntP family permease CUC43_10215 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CUC43_10215 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CUC43_10220 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region CUC43_10220 PF00326 Prolyl oligopeptidase family CUC43_10255 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_10260 PF00005 ABC transporter CUC43_10260 PF09383 NIL domain CUC43_10265 PF03180 NLPA lipoprotein CUC43_10280 PF01565 FAD binding domain CUC43_10295 PF07690 Major Facilitator Superfamily CUC43_10310 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_10315 PF12911 N-terminal TM domain of oligopeptide transport permease C CUC43_10315 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_10320 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CUC43_10320 PF00005 ABC transporter CUC43_10325 PF00005 ABC transporter CUC43_10325 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CUC43_10330 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CUC43_10345 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CUC43_10350 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CUC43_10355 PF00248 Aldo/keto reductase family CUC43_10360 PF03807 NADP oxidoreductase coenzyme F420-dependent CUC43_10360 PF14748 Pyrroline-5-carboxylate reductase dimerisation CUC43_10385 PF06800 Sugar transport protein CUC43_10390 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_10400 PF12728 Helix-turn-helix domain CUC43_10400 PF12727 PBP superfamily domain CUC43_10415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC43_10415 PF03466 LysR substrate binding domain CUC43_10420 PF00892 EamA-like transporter family CUC43_10425 PF14142 YrzO-like protein CUC43_10440 PF01553 Acyltransferase CUC43_10450 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family CUC43_10450 PF00356 Bacterial regulatory proteins, lacI family CUC43_10460 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CUC43_10460 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CUC43_10475 PF01026 TatD related DNase CUC43_10485 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) CUC43_10510 PF12848 ABC transporter CUC43_10510 PF16326 ABC transporter C-terminal domain CUC43_10510 PF00005 ABC transporter CUC43_10515 PF07730 Histidine kinase CUC43_10520 PF00072 Response regulator receiver domain CUC43_10520 PF00196 Bacterial regulatory proteins, luxR family CUC43_10525 PF00005 ABC transporter CUC43_10550 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CUC43_10555 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_10565 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CUC43_10565 PF00005 ABC transporter CUC43_10570 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CUC43_10570 PF00005 ABC transporter CUC43_10615 PF01557 Fumarylacetoacetate (FAA) hydrolase family CUC43_10630 PF13520 Amino acid permease CUC43_10635 PF07690 Major Facilitator Superfamily CUC43_10640 PF07478 D-ala D-ala ligase C-terminus CUC43_10640 PF01820 D-ala D-ala ligase N-terminus CUC43_10645 PF02875 Mur ligase family, glutamate ligase domain CUC43_10645 PF08245 Mur ligase middle domain CUC43_10645 PF01225 Mur ligase family, catalytic domain CUC43_10650 PF00271 Helicase conserved C-terminal domain CUC43_10650 PF00270 DEAD/DEAH box helicase CUC43_10655 PF03851 UV-endonuclease UvdE CUC43_10660 PF01694 Rhomboid family CUC43_10665 PF01648 4'-phosphopantetheinyl transferase superfamily CUC43_10675 PF00842 Alanine racemase, C-terminal domain CUC43_10675 PF01168 Alanine racemase, N-terminal domain CUC43_10680 PF01402 Ribbon-helix-helix protein, copG family CUC43_10685 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system CUC43_10690 PF16921 Tex protein YqgF-like domain CUC43_10690 PF00575 S1 RNA binding domain CUC43_10690 PF17674 HHH domain CUC43_10690 PF09371 Tex-like protein N-terminal domain CUC43_10700 PF10263 SprT-like family CUC43_10700 PF17283 SprT-like zinc ribbon domain CUC43_10785 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE CUC43_10790 PF00814 Glycoprotease family CUC43_10795 PF00583 Acetyltransferase (GNAT) family CUC43_10800 PF00814 Glycoprotease family CUC43_10805 PF12848 ABC transporter CUC43_10805 PF16326 ABC transporter C-terminal domain CUC43_10805 PF00005 ABC transporter CUC43_10810 PF06971 Putative DNA-binding protein N-terminus CUC43_10810 PF02629 CoA binding domain CUC43_10820 PF02517 CPBP intramembrane metalloprotease CUC43_10825 PF00166 Chaperonin 10 Kd subunit CUC43_10830 PF00118 TCP-1/cpn60 chaperonin family CUC43_10845 PF02540 NAD synthase CUC43_10845 PF00958 GMP synthase C terminal domain CUC43_10845 PF00117 Glutamine amidotransferase class-I CUC43_10850 PF00860 Permease family CUC43_10855 PF00072 Response regulator receiver domain CUC43_10855 PF00486 Transcriptional regulatory protein, C terminal CUC43_10860 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_10860 PF16736 Single Cache-like CUC43_10860 PF00512 His Kinase A (phospho-acceptor) domain CUC43_10860 PF00989 PAS fold CUC43_10885 PF01323 DSBA-like thioredoxin domain CUC43_10905 PF05045 Rhamnan synthesis protein F CUC43_10905 PF14307 Glycosyltransferase WbsX CUC43_10915 PF08241 Methyltransferase domain CUC43_10945 PF00535 Glycosyl transferase family 2 CUC43_10965 PF02673 Bacitracin resistance protein BacA CUC43_10975 PF00005 ABC transporter CUC43_10980 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_10980 PF00512 His Kinase A (phospho-acceptor) domain CUC43_10985 PF00072 Response regulator receiver domain CUC43_10985 PF00486 Transcriptional regulatory protein, C terminal CUC43_11005 PF00892 EamA-like transporter family CUC43_11030 PF00731 AIR carboxylase CUC43_11035 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain CUC43_11035 PF02222 ATP-grasp domain CUC43_11040 PF00206 Lyase CUC43_11040 PF10397 Adenylosuccinate lyase C-terminus CUC43_11045 PF01259 SAICAR synthetase CUC43_11050 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase CUC43_11060 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain CUC43_11060 PF00586 AIR synthase related protein, N-terminal domain CUC43_11060 PF02769 AIR synthase related protein, C-terminal domain CUC43_11065 PF00156 Phosphoribosyl transferase domain CUC43_11070 PF02769 AIR synthase related protein, C-terminal domain CUC43_11070 PF00586 AIR synthase related protein, N-terminal domain CUC43_11075 PF00551 Formyl transferase CUC43_11080 PF01808 AICARFT/IMPCHase bienzyme CUC43_11080 PF02142 MGS-like domain CUC43_11085 PF02843 Phosphoribosylglycinamide synthetase, C domain CUC43_11085 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain CUC43_11085 PF02844 Phosphoribosylglycinamide synthetase, N domain CUC43_11110 PF01884 PcrB family CUC43_11115 PF13361 UvrD-like helicase C-terminal domain CUC43_11115 PF00580 UvrD/REP helicase N-terminal domain CUC43_11120 PF00533 BRCA1 C Terminus (BRCT) domain CUC43_11120 PF03119 NAD-dependent DNA ligase C4 zinc finger domain CUC43_11120 PF12826 Helix-hairpin-helix motif CUC43_11120 PF03120 NAD-dependent DNA ligase OB-fold domain CUC43_11120 PF01653 NAD-dependent DNA ligase adenylation domain CUC43_11125 PF07537 CamS sex pheromone cAM373 precursor CUC43_11130 PF01925 Sulfite exporter TauE/SafE CUC43_11135 PF00171 Aldehyde dehydrogenase family CUC43_11145 PF00857 Isochorismatase family CUC43_11155 PF09383 NIL domain CUC43_11155 PF00005 ABC transporter CUC43_11160 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_11165 PF03180 NLPA lipoprotein CUC43_11190 PF17886 HSP20-like domain found in ArsA CUC43_11190 PF02374 Anion-transporting ATPase CUC43_11195 PF01047 MarR family CUC43_11200 PF05360 yiaA/B two helix domain CUC43_11205 PF02686 Glu-tRNAGln amidotransferase C subunit CUC43_11210 PF01425 Amidase CUC43_11215 PF02637 GatB domain CUC43_11215 PF02934 GatB/GatE catalytic domain CUC43_11220 PF00781 Diacylglycerol kinase catalytic domain CUC43_11225 PF13419 Haloacid dehalogenase-like hydrolase CUC43_11230 PF00202 Aminotransferase class-III CUC43_11235 PF00158 Sigma-54 interaction domain CUC43_11240 PF00171 Aldehyde dehydrogenase family CUC43_11245 PF00893 Small Multidrug Resistance protein CUC43_11250 PF02073 Thermophilic metalloprotease (M29) CUC43_11280 PF07670 Nucleoside recognition CUC43_11280 PF07662 Na+ dependent nucleoside transporter C-terminus CUC43_11280 PF01773 Na+ dependent nucleoside transporter N-terminus CUC43_11285 PF05958 tRNA (Uracil-5-)-methyltransferase CUC43_11285 PF01938 TRAM domain CUC43_11285 PF02475 Met-10+ like-protein CUC43_11290 PF14659 Phage integrase, N-terminal SAM-like domain CUC43_11290 PF00589 Phage integrase family CUC43_11300 PF01381 Helix-turn-helix CUC43_11310 PF01381 Helix-turn-helix CUC43_11355 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CUC43_11355 PF18277 AbrB C-terminal domain CUC43_11440 PF00589 Phage integrase family CUC43_11445 PF09397 Ftsk gamma domain CUC43_11445 PF17854 FtsK alpha domain CUC43_11445 PF01580 FtsK/SpoIIIE family CUC43_11480 PF03354 Phage Terminase CUC43_11490 PF01548 Transposase CUC43_11490 PF02371 Transposase IS116/IS110/IS902 family CUC43_11560 PF05105 Bacteriophage holin family CUC43_11565 PF02371 Transposase IS116/IS110/IS902 family CUC43_11565 PF01548 Transposase CUC43_11585 PF01207 Dihydrouridine synthase (Dus) CUC43_11595 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_11595 PF00512 His Kinase A (phospho-acceptor) domain CUC43_11595 PF00989 PAS fold CUC43_11600 PF07308 Protein of unknown function (DUF1456) CUC43_11625 PF13378 Enolase C-terminal domain-like CUC43_11625 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CUC43_11640 PF01546 Peptidase family M20/M25/M40 CUC43_11640 PF07687 Peptidase dimerisation domain CUC43_11655 PF13192 Thioredoxin domain CUC43_11655 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC43_11660 PF00578 AhpC/TSA family CUC43_11665 PF01636 Phosphotransferase enzyme family CUC43_11675 PF00596 Class II Aldolase and Adducin N-terminal domain CUC43_11680 PF01032 FecCD transport family CUC43_11685 PF01032 FecCD transport family CUC43_11690 PF01497 Periplasmic binding protein CUC43_11700 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC43_11715 PF12728 Helix-turn-helix domain CUC43_11765 PF10127 RNA repair pathway DNA polymerase beta family CUC43_11770 PF07690 Major Facilitator Superfamily CUC43_11780 PF01266 FAD dependent oxidoreductase CUC43_11780 PF00355 Rieske [2Fe-2S] domain CUC43_11790 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_11795 PF00497 Bacterial extracellular solute-binding proteins, family 3 CUC43_11800 PF00005 ABC transporter CUC43_11805 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CUC43_11805 PF00672 HAMP domain CUC43_11805 PF12729 Four helix bundle sensory module for signal transduction CUC43_11810 PF01565 FAD binding domain CUC43_11810 PF08031 Berberine and berberine like CUC43_11815 PF00128 Alpha amylase, catalytic domain CUC43_11815 PF16657 Maltogenic Amylase, C-terminal domain CUC43_11820 PF02378 Phosphotransferase system, EIIC CUC43_11820 PF00367 phosphotransferase system, EIIB CUC43_11820 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 CUC43_11825 PF03372 Endonuclease/Exonuclease/phosphatase family CUC43_11830 PF01061 ABC-2 type transporter CUC43_11835 PF01131 DNA topoisomerase CUC43_11835 PF01751 Toprim domain CUC43_11845 PF02110 Hydroxyethylthiazole kinase family CUC43_11850 PF02581 Thiamine monophosphate synthase CUC43_11855 PF03605 Anaerobic c4-dicarboxylate membrane transporter CUC43_11860 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CUC43_11860 PF00672 HAMP domain CUC43_11865 PF01910 Thiamine-binding protein CUC43_11870 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_11880 PF00005 ABC transporter CUC43_11905 PF00704 Glycosyl hydrolases family 18 CUC43_11905 PF00041 Fibronectin type III domain CUC43_11930 PF08360 QacR-like protein, C-terminal region CUC43_11930 PF00440 Bacterial regulatory proteins, tetR family CUC43_11950 PF11700 Vacuole effluxer Atg22 like CUC43_11965 PF09180 Prolyl-tRNA synthetase, C-terminal CUC43_11965 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CUC43_11965 PF03129 Anticodon binding domain CUC43_11975 PF00480 ROK family CUC43_11980 PF02342 TerD domain CUC43_11985 PF02342 TerD domain CUC43_11990 PF02342 TerD domain CUC43_11995 PF03741 Integral membrane protein TerC family CUC43_12000 PF14266 Putative component of 'biosynthetic module' CUC43_12005 PF05816 Toxic anion resistance protein (TelA) CUC43_12010 PF00690 Cation transporter/ATPase, N-terminus CUC43_12010 PF00689 Cation transporting ATPase, C-terminus CUC43_12015 PF06569 Protein of unknown function (DUF1128) CUC43_12020 PF01451 Low molecular weight phosphotyrosine protein phosphatase CUC43_12030 PF03631 Virulence factor BrkB CUC43_12045 PF00892 EamA-like transporter family CUC43_12055 PF10502 Signal peptidase, peptidase S26 CUC43_12065 PF09335 SNARE associated Golgi protein CUC43_12080 PF16242 Pyridoxamine 5'-phosphate oxidase like CUC43_12085 PF01699 Sodium/calcium exchanger protein CUC43_12090 PF14167 YfkD-like protein CUC43_12095 PF08756 YfkB-like domain CUC43_12095 PF04055 Radical SAM superfamily CUC43_12105 PF05681 Fumarate hydratase (Fumerase) CUC43_12105 PF05683 Fumarase C-terminus CUC43_12110 PF01522 Polysaccharide deacetylase CUC43_12115 PF00730 HhH-GPD superfamily base excision DNA repair protein CUC43_12120 PF05958 tRNA (Uracil-5-)-methyltransferase CUC43_12120 PF01938 TRAM domain CUC43_12125 PF01416 tRNA pseudouridine synthase CUC43_12135 PF00158 Sigma-54 interaction domain CUC43_12135 PF02954 Bacterial regulatory protein, Fis family CUC43_12135 PF13426 PAS domain CUC43_12145 PF00324 Amino acid permease CUC43_12150 PF07687 Peptidase dimerisation domain CUC43_12150 PF01546 Peptidase family M20/M25/M40 CUC43_12180 PF04960 Glutaminase CUC43_12190 PF00367 phosphotransferase system, EIIB CUC43_12190 PF02378 Phosphotransferase system, EIIC CUC43_12195 PF00144 Beta-lactamase CUC43_12215 PF00535 Glycosyl transferase family 2 CUC43_12220 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain CUC43_12220 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain CUC43_12220 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain CUC43_12225 PF00551 Formyl transferase CUC43_12225 PF02911 Formyl transferase, C-terminal domain CUC43_12225 PF01370 NAD dependent epimerase/dehydratase family CUC43_12230 PF00535 Glycosyl transferase family 2 CUC43_12235 PF02901 Pyruvate formate lyase-like CUC43_12235 PF01228 Glycine radical CUC43_12240 PF04055 Radical SAM superfamily CUC43_12245 PF04101 Glycosyltransferase family 28 C-terminal domain CUC43_12245 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase CUC43_12260 PF01979 Amidohydrolase family CUC43_12265 PF08338 Domain of unknown function (DUF1731) CUC43_12265 PF01370 NAD dependent epimerase/dehydratase family CUC43_12270 PF01548 Transposase CUC43_12270 PF02371 Transposase IS116/IS110/IS902 family CUC43_12275 PF02631 RecX family CUC43_12290 PF08176 Small acid-soluble spore protein K family CUC43_12295 PF14043 WVELL protein CUC43_12300 PF04307 LexA-binding, inner membrane-associated putative hydrolase CUC43_12305 PF00730 HhH-GPD superfamily base excision DNA repair protein CUC43_12305 PF14815 NUDIX domain CUC43_12315 PF04259 Small, acid-soluble spore protein, gamma-type CUC43_12320 PF14182 YgaB-like protein CUC43_12325 PF04167 Protein of unknown function (DUF402) CUC43_12330 PF00005 ABC transporter CUC43_12330 PF00664 ABC transporter transmembrane region CUC43_12335 PF06081 Aromatic acid exporter family member 1 CUC43_12340 PF01645 Conserved region in glutamate synthase CUC43_12340 PF00310 Glutamine amidotransferases class-II CUC43_12340 PF04898 Glutamate synthase central domain CUC43_12340 PF01493 GXGXG motif CUC43_12345 PF00202 Aminotransferase class-III CUC43_12350 PF00005 ABC transporter CUC43_12365 PF07885 Ion channel CUC43_12370 PF00578 AhpC/TSA family CUC43_12375 PF01475 Ferric uptake regulator family CUC43_12380 PF11023 Zinc-ribbon containing domain CUC43_12480 PF00589 Phage integrase family CUC43_12480 PF02899 Phage integrase, N-terminal SAM-like domain CUC43_12490 PF08459 UvrC Helix-hairpin-helix N-terminal CUC43_12490 PF01541 GIY-YIG catalytic domain CUC43_12520 PF00239 Resolvase, N terminal domain CUC43_12520 PF02796 Helix-turn-helix domain of resolvase CUC43_12580 PF01709 Transcriptional regulator CUC43_12585 PF09297 NADH pyrophosphatase zinc ribbon domain CUC43_12585 PF00293 NUDIX domain CUC43_12590 PF00912 Transglycosylase CUC43_12590 PF00905 Penicillin binding protein transpeptidase domain CUC43_12595 PF13462 Thioredoxin CUC43_12610 PF12323 Helix-turn-helix domain CUC43_12610 PF01385 Probable transposase CUC43_12610 PF07282 Putative transposase DNA-binding domain CUC43_12620 PF08331 Domain of unknown function (DUF1730) CUC43_12625 PF12671 Putative amidase domain CUC43_12630 PF00588 SpoU rRNA Methylase family CUC43_12635 PF00990 Diguanylate cyclase, GGDEF domain CUC43_12635 PF03707 Bacterial signalling protein N terminal repeat CUC43_12635 PF00563 EAL domain CUC43_12645 PF08298 PrkA AAA domain CUC43_12645 PF06798 PrkA serine protein kinase C-terminal domain CUC43_12655 PF04285 Protein of unknown function (DUF444) CUC43_12670 PF02028 BCCT, betaine/carnitine/choline family transporter CUC43_12675 PF01752 Collagenase CUC43_12675 PF18496 Collagenase G catalytic helper subdomain CUC43_12675 PF08453 Peptidase family M9 N-terminal CUC43_12685 PF01145 SPFH domain / Band 7 family CUC43_12685 PF15975 Flotillin CUC43_12690 PF02743 Cache domain CUC43_12690 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CUC43_12690 PF00672 HAMP domain CUC43_12695 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CUC43_12695 PF00989 PAS fold CUC43_12695 PF17203 Single cache domain 3 CUC43_12695 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_12700 PF12431 Transcriptional regulator CUC43_12700 PF00072 Response regulator receiver domain CUC43_12705 PF03600 Citrate transporter CUC43_12730 PF04309 Glycerol-3-phosphate responsive antiterminator CUC43_12735 PF17912 MalK OB fold domain CUC43_12735 PF00005 ABC transporter CUC43_12740 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_12745 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_12750 PF13416 Bacterial extracellular solute-binding protein CUC43_12755 PF13276 HTH-like domain CUC43_12755 PF00665 Integrase core domain CUC43_12755 PF13333 Integrase core domain CUC43_12770 PF00072 Response regulator receiver domain CUC43_12770 PF00486 Transcriptional regulatory protein, C terminal CUC43_12775 PF00512 His Kinase A (phospho-acceptor) domain CUC43_12775 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_12785 PF13529 Peptidase_C39 like family CUC43_12790 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CUC43_12790 PF02743 Cache domain CUC43_12790 PF00672 HAMP domain CUC43_12795 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CUC43_12795 PF00989 PAS fold CUC43_12795 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_12795 PF17203 Single cache domain 3 CUC43_12800 PF00072 Response regulator receiver domain CUC43_12805 PF03390 2-hydroxycarboxylate transporter family CUC43_12810 PF00390 Malic enzyme, N-terminal domain CUC43_12810 PF03949 Malic enzyme, NAD binding domain CUC43_12820 PF00892 EamA-like transporter family CUC43_12825 PF00392 Bacterial regulatory proteins, gntR family CUC43_12825 PF00155 Aminotransferase class I and II CUC43_12835 PF00989 PAS fold CUC43_12835 PF00512 His Kinase A (phospho-acceptor) domain CUC43_12835 PF18698 Histidine kinase sensor domain CUC43_12835 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_12835 PF00672 HAMP domain CUC43_12840 PF00072 Response regulator receiver domain CUC43_12840 PF00486 Transcriptional regulatory protein, C terminal CUC43_12850 PF13508 Acetyltransferase (GNAT) domain CUC43_12850 PF00583 Acetyltransferase (GNAT) family CUC43_12855 PF02634 FdhD/NarQ family CUC43_12860 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CUC43_12860 PF00384 Molybdopterin oxidoreductase CUC43_12860 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CUC43_12860 PF00037 4Fe-4S binding domain CUC43_12860 PF01568 Molydopterin dinucleotide binding domain CUC43_12865 PF07849 Protein of unknown function (DUF1641) CUC43_12875 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CUC43_12875 PF05222 Alanine dehydrogenase/PNT, N-terminal domain CUC43_12880 PF13520 Amino acid permease CUC43_12885 PF01022 Bacterial regulatory protein, arsR family CUC43_12890 PF00403 Heavy-metal-associated domain CUC43_12895 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain CUC43_12895 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family CUC43_12895 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain CUC43_12905 PF01447 Thermolysin metallopeptidase, catalytic domain CUC43_12905 PF02868 Thermolysin metallopeptidase, alpha-helical domain CUC43_12905 PF07504 Fungalysin/Thermolysin Propeptide Motif CUC43_12905 PF03413 Peptidase propeptide and YPEB domain CUC43_12925 PF04294 VanW like protein CUC43_12930 PF03816 Cell envelope-related transcriptional attenuator domain CUC43_12935 PF01773 Na+ dependent nucleoside transporter N-terminus CUC43_12935 PF07662 Na+ dependent nucleoside transporter C-terminus CUC43_12940 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CUC43_12945 PF01595 Cyclin M transmembrane N-terminal domain CUC43_12945 PF00571 CBS domain CUC43_12945 PF03471 Transporter associated domain CUC43_12950 PF10415 Fumarase C C-terminus CUC43_12950 PF00206 Lyase CUC43_12955 PF02652 L-lactate permease CUC43_12965 PF01022 Bacterial regulatory protein, arsR family CUC43_12970 PF08141 Small acid-soluble spore protein H family CUC43_12975 PF00854 POT family CUC43_12980 PF01497 Periplasmic binding protein CUC43_12985 PF01032 FecCD transport family CUC43_12990 PF01032 FecCD transport family CUC43_12995 PF00005 ABC transporter CUC43_13000 PF08241 Methyltransferase domain CUC43_13005 PF00155 Aminotransferase class I and II CUC43_13010 PF01370 NAD dependent epimerase/dehydratase family CUC43_13015 PF00156 Phosphoribosyl transferase domain CUC43_13020 PF00293 NUDIX domain CUC43_13020 PF13344 Haloacid dehalogenase-like hydrolase CUC43_13025 PF00092 von Willebrand factor type A domain CUC43_13030 PF07728 AAA domain (dynein-related subfamily) CUC43_13035 PF13396 Phospholipase_D-nuclease N-terminal CUC43_13035 PF13091 PLD-like domain CUC43_13050 PF00990 Diguanylate cyclase, GGDEF domain CUC43_13050 PF00563 EAL domain CUC43_13050 PF03707 Bacterial signalling protein N terminal repeat CUC43_13055 PF13520 Amino acid permease CUC43_13060 PF07702 UTRA domain CUC43_13060 PF00392 Bacterial regulatory proteins, gntR family CUC43_13065 PF02378 Phosphotransferase system, EIIC CUC43_13065 PF00367 phosphotransferase system, EIIB CUC43_13070 PF00128 Alpha amylase, catalytic domain CUC43_13070 PF16657 Maltogenic Amylase, C-terminal domain CUC43_13085 PF03323 Bacillus/Clostridium GerA spore germination protein CUC43_13090 PF07730 Histidine kinase CUC43_13090 PF13492 GAF domain CUC43_13090 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_13095 PF00072 Response regulator receiver domain CUC43_13095 PF00196 Bacterial regulatory proteins, luxR family CUC43_13115 PF12389 Camelysin metallo-endopeptidase CUC43_13125 PF01636 Phosphotransferase enzyme family CUC43_13130 PF01235 Sodium:alanine symporter family CUC43_13140 PF00005 ABC transporter CUC43_13145 PF00497 Bacterial extracellular solute-binding proteins, family 3 CUC43_13150 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_13155 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_13160 PF00324 Amino acid permease CUC43_13175 PF08281 Sigma-70, region 4 CUC43_13175 PF04542 Sigma-70 region 2 CUC43_13190 PF13280 WYL domain CUC43_13190 PF08279 HTH domain CUC43_13195 PF01872 RibD C-terminal domain CUC43_13200 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_13200 PF00989 PAS fold CUC43_13200 PF00512 His Kinase A (phospho-acceptor) domain CUC43_13200 PF00672 HAMP domain CUC43_13200 PF18698 Histidine kinase sensor domain CUC43_13205 PF00072 Response regulator receiver domain CUC43_13205 PF00486 Transcriptional regulatory protein, C terminal CUC43_13215 PF00916 Sulfate permease family CUC43_13215 PF01740 STAS domain CUC43_13220 PF00582 Universal stress protein family CUC43_13230 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CUC43_13235 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_13240 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_13245 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CUC43_13245 PF00005 ABC transporter CUC43_13250 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CUC43_13250 PF00005 ABC transporter CUC43_13255 PF07690 Major Facilitator Superfamily CUC43_13260 PF01047 MarR family CUC43_13265 PF07690 Major Facilitator Superfamily CUC43_13270 PF00356 Bacterial regulatory proteins, lacI family CUC43_13275 PF00294 pfkB family carbohydrate kinase CUC43_13280 PF05025 RbsD / FucU transport protein family CUC43_13285 PF00005 ABC transporter CUC43_13290 PF02653 Branched-chain amino acid transport system / permease component CUC43_13295 PF13407 Periplasmic binding protein domain CUC43_13300 PF00923 Transaldolase/Fructose-6-phosphate aldolase CUC43_13310 PF05547 Immune inhibitor A peptidase M6 CUC43_13325 PF08240 Alcohol dehydrogenase GroES-like domain CUC43_13325 PF00107 Zinc-binding dehydrogenase CUC43_13335 PF00882 Zinc dependent phospholipase C CUC43_13340 PF03372 Endonuclease/Exonuclease/phosphatase family CUC43_13365 PF02673 Bacitracin resistance protein BacA CUC43_13370 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CUC43_13370 PF00672 HAMP domain CUC43_13370 PF02743 Cache domain CUC43_13375 PF06725 3D domain CUC43_13375 PF01476 LysM domain CUC43_13380 PF01381 Helix-turn-helix CUC43_13390 PF04203 Sortase domain CUC43_13400 PF00854 POT family CUC43_13405 PF05525 Branched-chain amino acid transport protein CUC43_13410 PF03180 NLPA lipoprotein CUC43_13415 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CUC43_13415 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CUC43_13415 PF02770 Acyl-CoA dehydrogenase, middle domain CUC43_13420 PF09383 NIL domain CUC43_13420 PF00005 ABC transporter CUC43_13425 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_13440 PF00324 Amino acid permease CUC43_13445 PF00860 Permease family CUC43_13460 PF13673 Acetyltransferase (GNAT) domain CUC43_13470 PF02254 TrkA-N domain CUC43_13470 PF02080 TrkA-C domain CUC43_13470 PF00999 Sodium/hydrogen exchanger family CUC43_13480 PF00510 Cytochrome c oxidase subunit III CUC43_13485 PF00115 Cytochrome C and Quinol oxidase polypeptide I CUC43_13490 PF02790 Cytochrome C oxidase subunit II, transmembrane domain CUC43_13495 PF00324 Amino acid permease CUC43_13500 PF13529 Peptidase_C39 like family CUC43_13505 PF01546 Peptidase family M20/M25/M40 CUC43_13505 PF07687 Peptidase dimerisation domain CUC43_13510 PF11755 Protein of unknown function (DUF3311) CUC43_13515 PF00474 Sodium:solute symporter family CUC43_13520 PF03323 Bacillus/Clostridium GerA spore germination protein CUC43_13525 PF03845 Spore germination protein CUC43_13530 PF05504 Spore germination B3/ GerAC like, C-terminal CUC43_13540 PF07670 Nucleoside recognition CUC43_13540 PF07664 Ferrous iron transport protein B C terminus CUC43_13540 PF17910 FeoB cytosolic helical domain CUC43_13540 PF02421 Ferrous iron transport protein B CUC43_13545 PF07664 Ferrous iron transport protein B C terminus CUC43_13545 PF07670 Nucleoside recognition CUC43_13545 PF17910 FeoB cytosolic helical domain CUC43_13545 PF02421 Ferrous iron transport protein B CUC43_13550 PF17910 FeoB cytosolic helical domain CUC43_13550 PF07664 Ferrous iron transport protein B C terminus CUC43_13550 PF04023 FeoA domain CUC43_13550 PF07670 Nucleoside recognition CUC43_13550 PF02421 Ferrous iron transport protein B CUC43_13555 PF12849 PBP superfamily domain CUC43_13560 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_13565 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_13575 PF00873 AcrB/AcrD/AcrF family CUC43_13700 PF00571 CBS domain CUC43_13735 PF03070 TENA/THI-4/PQQC family CUC43_13740 PF00005 ABC transporter CUC43_13745 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_13750 PF09084 NMT1/THI5 like CUC43_13755 PF02581 Thiamine monophosphate synthase CUC43_13760 PF01266 FAD dependent oxidoreductase CUC43_13765 PF02597 ThiS family CUC43_13770 PF05690 Thiazole biosynthesis protein ThiG CUC43_13775 PF00899 ThiF family CUC43_13780 PF08543 Phosphomethylpyrimidine kinase CUC43_13810 PF03814 Potassium-transporting ATPase A subunit CUC43_13820 PF02669 K+-transporting ATPase, c chain CUC43_13825 PF02702 Osmosensitive K+ channel His kinase sensor domain CUC43_13830 PF07690 Major Facilitator Superfamily CUC43_13835 PF01047 MarR family CUC43_13850 PF00860 Permease family CUC43_13860 PF03734 L,D-transpeptidase catalytic domain CUC43_13860 PF17969 L,D-transpeptidase C-terminal domain CUC43_13875 PF00085 Thioredoxin CUC43_13880 PF02600 Disulfide bond formation protein DsbB CUC43_13885 PF14148 YhdB-like protein CUC43_13895 PF03845 Spore germination protein CUC43_13905 PF03323 Bacillus/Clostridium GerA spore germination protein CUC43_13915 PF00881 Nitroreductase family CUC43_13920 PF04293 SpoVR like protein CUC43_13930 PF00089 Trypsin CUC43_13955 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CUC43_13955 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC43_13960 PF02583 Metal-sensitive transcriptional repressor CUC43_13965 PF01206 Sulfurtransferase TusA CUC43_13965 PF00581 Rhodanese-like domain CUC43_13970 PF00753 Metallo-beta-lactamase superfamily CUC43_13970 PF00581 Rhodanese-like domain CUC43_13975 PF01206 Sulfurtransferase TusA CUC43_13980 PF01206 Sulfurtransferase TusA CUC43_13980 PF00581 Rhodanese-like domain CUC43_13990 PF13686 DsrE/DsrF/DrsH-like family CUC43_13995 PF01925 Sulfite exporter TauE/SafE CUC43_14005 PF03816 Cell envelope-related transcriptional attenuator domain CUC43_14010 PF08240 Alcohol dehydrogenase GroES-like domain CUC43_14010 PF00107 Zinc-binding dehydrogenase CUC43_14015 PF02690 Na+/Pi-cotransporter CUC43_14020 PF07690 Major Facilitator Superfamily CUC43_14035 PF00874 PRD domain CUC43_14035 PF08279 HTH domain CUC43_14035 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CUC43_14035 PF05043 Mga helix-turn-helix domain CUC43_14040 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit CUC43_14045 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CUC43_14050 PF02378 Phosphotransferase system, EIIC CUC43_14065 PF01476 LysM domain CUC43_14065 PF06725 3D domain CUC43_14070 PF12704 MacB-like periplasmic core domain CUC43_14070 PF02687 FtsX-like permease family CUC43_14075 PF00005 ABC transporter CUC43_14100 PF05525 Branched-chain amino acid transport protein CUC43_14105 PF05067 Manganese containing catalase CUC43_14110 PF12652 CotJB protein CUC43_14115 PF11007 Spore coat associated protein JA (CotJA) CUC43_14130 PF02735 Ku70/Ku80 beta-barrel domain CUC43_14140 PF09335 SNARE associated Golgi protein CUC43_14165 PF13520 Amino acid permease CUC43_14170 PF00999 Sodium/hydrogen exchanger family CUC43_14180 PF01380 SIS domain CUC43_14180 PF01418 Helix-turn-helix domain, rpiR family CUC43_14185 PF13580 SIS domain CUC43_14190 PF02378 Phosphotransferase system, EIIC CUC43_14190 PF00367 phosphotransferase system, EIIB CUC43_14200 PF07681 DoxX CUC43_14215 PF00892 EamA-like transporter family CUC43_14220 PF01037 Lrp/AsnC ligand binding domain CUC43_14230 PF00893 Small Multidrug Resistance protein CUC43_14240 PF17934 Tetracyclin repressor-like, C-terminal domain CUC43_14240 PF00440 Bacterial regulatory proteins, tetR family CUC43_14245 PF07690 Major Facilitator Superfamily CUC43_14250 PF01638 HxlR-like helix-turn-helix CUC43_14260 PF02525 Flavodoxin-like fold CUC43_14280 PF07690 Major Facilitator Superfamily CUC43_14290 PF01965 DJ-1/PfpI family CUC43_14305 PF13520 Amino acid permease CUC43_14310 PF01177 Asp/Glu/Hydantoin racemase CUC43_14320 PF00171 Aldehyde dehydrogenase family CUC43_14340 PF00664 ABC transporter transmembrane region CUC43_14340 PF00005 ABC transporter CUC43_14345 PF00664 ABC transporter transmembrane region CUC43_14345 PF00005 ABC transporter CUC43_14355 PF00497 Bacterial extracellular solute-binding proteins, family 3 CUC43_14360 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_14365 PF00005 ABC transporter CUC43_14370 PF00269 Small, acid-soluble spore proteins, alpha/beta type CUC43_14380 PF14398 YheC/D like ATP-grasp CUC43_14390 PF04286 Protein of unknown function (DUF445) CUC43_14395 PF06133 Control of competence regulator ComK, YlbF/YmcA CUC43_14410 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CUC43_14410 PF00205 Thiamine pyrophosphate enzyme, central domain CUC43_14410 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CUC43_14415 PF03306 Alpha-acetolactate decarboxylase CUC43_14420 PF02245 Methylpurine-DNA glycosylase (MPG) CUC43_14435 PF01471 Putative peptidoglycan binding domain CUC43_14435 PF01510 N-acetylmuramoyl-L-alanine amidase CUC43_14435 PF01476 LysM domain CUC43_14445 PF04055 Radical SAM superfamily CUC43_14455 PF00501 AMP-binding enzyme CUC43_14455 PF13193 AMP-binding enzyme C-terminal domain CUC43_14470 PF00916 Sulfate permease family CUC43_14470 PF01740 STAS domain CUC43_14505 PF01943 Polysaccharide biosynthesis protein CUC43_14505 PF14667 Polysaccharide biosynthesis C-terminal domain CUC43_14525 PF03062 MBOAT, membrane-bound O-acyltransferase family CUC43_14535 PF00378 Enoyl-CoA hydratase/isomerase CUC43_14555 PF05343 M42 glutamyl aminopeptidase CUC43_14560 PF01520 N-acetylmuramoyl-L-alanine amidase CUC43_14560 PF00395 S-layer homology domain CUC43_14570 PF11121 Protein of unknown function (DUF2639) CUC43_14575 PF05544 Proline racemase CUC43_14580 PF02423 Ornithine cyclodeaminase/mu-crystallin family CUC43_14610 PF00772 DnaB-like helicase N terminal domain CUC43_14610 PF03796 DnaB-like helicase C terminal domain CUC43_14640 PF01471 Putative peptidoglycan binding domain CUC43_14640 PF08924 Domain of unknown function (DUF1906) CUC43_14660 PF02371 Transposase IS116/IS110/IS902 family CUC43_14660 PF01548 Transposase CUC43_14675 PF01510 N-acetylmuramoyl-L-alanine amidase CUC43_14695 PF01381 Helix-turn-helix CUC43_14700 PF08924 Domain of unknown function (DUF1906) CUC43_14700 PF01471 Putative peptidoglycan binding domain CUC43_14720 PF00083 Sugar (and other) transporter CUC43_14725 PF01548 Transposase CUC43_14725 PF02371 Transposase IS116/IS110/IS902 family CUC43_14735 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain CUC43_14735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_14740 PF12431 Transcriptional regulator CUC43_14740 PF00072 Response regulator receiver domain CUC43_14740 PF08279 HTH domain CUC43_14745 PF03401 Tripartite tricarboxylate transporter family receptor CUC43_14755 PF01348 Type II intron maturase CUC43_14755 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CUC43_14790 PF02384 N-6 DNA Methylase CUC43_14800 PF04313 Type I restriction enzyme R protein N terminus (HSDR_N) CUC43_14800 PF18766 SWI2/SNF2 ATPase CUC43_14800 PF11867 Domain of unknown function (DUF3387) CUC43_14840 PF03796 DnaB-like helicase C terminal domain CUC43_14840 PF00772 DnaB-like helicase N terminal domain CUC43_14865 PF01926 50S ribosome-binding GTPase CUC43_14865 PF07650 KH domain CUC43_14870 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CUC43_14870 PF01926 50S ribosome-binding GTPase CUC43_14880 PF01925 Sulfite exporter TauE/SafE CUC43_14890 PF00158 Sigma-54 interaction domain CUC43_14890 PF13426 PAS domain CUC43_14890 PF02954 Bacterial regulatory protein, Fis family CUC43_14895 PF07722 Peptidase C26 CUC43_14900 PF03606 C4-dicarboxylate anaerobic carrier CUC43_14915 PF07690 Major Facilitator Superfamily CUC43_15015 PF01066 CDP-alcohol phosphatidyltransferase CUC43_15040 PF02733 Dak1 domain CUC43_15055 PF02733 Dak1 domain CUC43_15065 PF02525 Flavodoxin-like fold CUC43_15070 PF02082 Transcriptional regulator CUC43_15105 PF01966 HD domain CUC43_15105 PF00672 HAMP domain CUC43_15130 PF00395 S-layer homology domain CUC43_15130 PF02368 Bacterial Ig-like domain (group 2) CUC43_15130 PF13205 Bacterial Ig-like domain CUC43_15175 PF00005 ABC transporter CUC43_15180 PF02687 FtsX-like permease family CUC43_15185 PF12697 Alpha/beta hydrolase family CUC43_15200 PF11181 Heat induced stress protein YflT CUC43_15205 PF02371 Transposase IS116/IS110/IS902 family CUC43_15205 PF01548 Transposase CUC43_15215 PF05532 CsbD-like CUC43_15230 PF01740 STAS domain CUC43_15235 PF13581 Histidine kinase-like ATPase domain CUC43_15240 PF04539 Sigma-70 region 3 CUC43_15240 PF04542 Sigma-70 region 2 CUC43_15240 PF04545 Sigma-70, region 4 CUC43_15250 PF13426 PAS domain CUC43_15250 PF07228 Stage II sporulation protein E (SpoIIE) CUC43_15255 PF01739 CheR methyltransferase, SAM binding domain CUC43_15255 PF03705 CheR methyltransferase, all-alpha domain CUC43_15260 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_15260 PF00512 His Kinase A (phospho-acceptor) domain CUC43_15260 PF01627 Hpt domain CUC43_15260 PF00072 Response regulator receiver domain CUC43_15260 PF00497 Bacterial extracellular solute-binding proteins, family 3 CUC43_15285 PF01906 Putative heavy-metal-binding CUC43_15300 PF07282 Putative transposase DNA-binding domain CUC43_15300 PF01385 Probable transposase CUC43_15300 PF12323 Helix-turn-helix domain CUC43_15320 PF11121 Protein of unknown function (DUF2639) CUC43_15335 PF00149 Calcineurin-like phosphoesterase CUC43_15340 PF13514 AAA domain CUC43_15345 PF01966 HD domain CUC43_15345 PF01336 OB-fold nucleic acid binding domain CUC43_15365 PF04493 Endonuclease V CUC43_15405 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CUC43_15410 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CUC43_15415 PF18801 response regulator aspartate phosphatase H, N terminal CUC43_15425 PF00561 alpha/beta hydrolase fold CUC43_15425 PF08386 TAP-like protein CUC43_15455 PF04309 Glycerol-3-phosphate responsive antiterminator CUC43_15460 PF00230 Major intrinsic protein CUC43_15465 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CUC43_15465 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CUC43_15470 PF16901 C-terminal domain of alpha-glycerophosphate oxidase CUC43_15470 PF01266 FAD dependent oxidoreductase CUC43_15485 PF01161 Phosphatidylethanolamine-binding protein CUC43_15490 PF08281 Sigma-70, region 4 CUC43_15490 PF04542 Sigma-70 region 2 CUC43_15515 PF07690 Major Facilitator Superfamily CUC43_15520 PF07690 Major Facilitator Superfamily CUC43_15530 PF03176 MMPL family CUC43_15580 PF01047 MarR family CUC43_15585 PF12732 YtxH-like protein CUC43_15590 PF01230 HIT domain CUC43_15600 PF00005 ABC transporter CUC43_15605 PF05975 Bacterial ABC transporter protein EcsB CUC43_15610 PF12787 EcsC protein family CUC43_15635 PF00440 Bacterial regulatory proteins, tetR family CUC43_15635 PF17934 Tetracyclin repressor-like, C-terminal domain CUC43_15645 PF03703 Bacterial PH domain CUC43_15650 PF03703 Bacterial PH domain CUC43_15695 PF03703 Bacterial PH domain CUC43_15700 PF03703 Bacterial PH domain CUC43_15705 PF03992 Antibiotic biosynthesis monooxygenase CUC43_15710 PF00912 Transglycosylase CUC43_15710 PF00905 Penicillin binding protein transpeptidase domain CUC43_15715 PF01208 Uroporphyrinogen decarboxylase (URO-D) CUC43_15750 PF00440 Bacterial regulatory proteins, tetR family CUC43_15750 PF17932 Tetracyclin repressor-like, C-terminal domain CUC43_15775 PF12867 DinB superfamily CUC43_15780 PF08279 HTH domain CUC43_15780 PF13280 WYL domain CUC43_15790 PF00356 Bacterial regulatory proteins, lacI family CUC43_15795 PF14149 YhfH-like protein CUC43_15800 PF12706 Beta-lactamase superfamily domain CUC43_15805 PF03099 Biotin/lipoate A/B protein ligase family CUC43_15805 PF10437 Bacterial lipoate protein ligase C-terminus CUC43_15815 PF00501 AMP-binding enzyme CUC43_15815 PF13193 AMP-binding enzyme C-terminal domain CUC43_15825 PF02371 Transposase IS116/IS110/IS902 family CUC43_15825 PF01548 Transposase CUC43_15835 PF01520 N-acetylmuramoyl-L-alanine amidase CUC43_15835 PF00395 S-layer homology domain CUC43_15855 PF05593 RHS Repeat CUC43_15870 PF12146 Serine aminopeptidase, S33 CUC43_15875 PF00149 Calcineurin-like phosphoesterase CUC43_15885 PF01966 HD domain CUC43_15915 PF04542 Sigma-70 region 2 CUC43_15915 PF08281 Sigma-70, region 4 CUC43_15920 PF06445 GyrI-like small molecule binding domain CUC43_15920 PF12833 Helix-turn-helix domain CUC43_15925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_15925 PF00512 His Kinase A (phospho-acceptor) domain CUC43_15930 PF00486 Transcriptional regulatory protein, C terminal CUC43_15930 PF00072 Response regulator receiver domain CUC43_15955 PF01435 Peptidase family M48 CUC43_15955 PF16491 CAAX prenyl protease N-terminal, five membrane helices CUC43_15960 PF00892 EamA-like transporter family CUC43_15965 PF00150 Cellulase (glycosyl hydrolase family 5) CUC43_15965 PF00395 S-layer homology domain CUC43_15965 PF03424 Carbohydrate binding domain (family 17/28) CUC43_15975 PF00395 S-layer homology domain CUC43_15980 PF01274 Malate synthase CUC43_15985 PF00463 Isocitrate lyase family CUC43_15995 PF00313 'Cold-shock' DNA-binding domain CUC43_16015 PF06338 ComK protein CUC43_16025 PF09335 SNARE associated Golgi protein CUC43_16030 PF10502 Signal peptidase, peptidase S26 CUC43_16035 PF13361 UvrD-like helicase C-terminal domain CUC43_16035 PF12705 PD-(D/E)XK nuclease superfamily CUC43_16040 PF13361 UvrD-like helicase C-terminal domain CUC43_16040 PF00580 UvrD/REP helicase N-terminal domain CUC43_16040 PF12705 PD-(D/E)XK nuclease superfamily CUC43_16050 PF10676 Spore germination protein gerPA/gerPF CUC43_16055 PF10970 Spore germination protein GerPE CUC43_16065 PF10737 Spore germination protein GerPC CUC43_16070 PF10803 Spore germination GerPB CUC43_16075 PF10676 Spore germination protein gerPA/gerPF CUC43_16080 PF09388 Spo0E like sporulation regulatory protein CUC43_16085 PF01557 Fumarylacetoacetate (FAA) hydrolase family CUC43_16095 PF00202 Aminotransferase class-III CUC43_16100 PF07457 Protein of unknown function (DUF1516) CUC43_16110 PF00733 Asparagine synthase CUC43_16110 PF13537 Glutamine amidotransferase domain CUC43_16120 PF06628 Catalase-related immune-responsive CUC43_16120 PF00199 Catalase CUC43_16125 PF00909 Ammonium Transporter Family CUC43_16135 PF00128 Alpha amylase, catalytic domain CUC43_16160 PF04461 Protein of unknown function (DUF520) CUC43_16165 PF13509 S1 domain CUC43_16165 PF17783 CvfB-like winged helix domain CUC43_16170 PF00639 PPIC-type PPIASE domain CUC43_16180 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CUC43_16180 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CUC43_16185 PF12758 Protein of unknown function (DUF3813) CUC43_16205 PF14168 YjzC-like protein CUC43_16210 PF00004 ATPase family associated with various cellular activities (AAA) CUC43_16210 PF17871 AAA lid domain CUC43_16210 PF02861 Clp amino terminal domain, pathogenicity island component CUC43_16210 PF10431 C-terminal, D2-small domain, of ClpB protein CUC43_16210 PF07724 AAA domain (Cdc48 subfamily) CUC43_16230 PF10815 ComZ CUC43_16240 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CUC43_16240 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CUC43_16245 PF02801 Beta-ketoacyl synthase, C-terminal domain CUC43_16245 PF00109 Beta-ketoacyl synthase, N-terminal domain CUC43_16250 PF10026 Predicted Zn-dependent protease (DUF2268) CUC43_16255 PF12227 Protein of unknown function (DUF3603) CUC43_16260 PF00579 tRNA synthetases class I (W and Y) CUC43_16275 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CUC43_16280 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_16285 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_16285 PF12911 N-terminal TM domain of oligopeptide transport permease C CUC43_16290 PF00005 ABC transporter CUC43_16290 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CUC43_16295 PF00005 ABC transporter CUC43_16295 PF08352 Oligopeptide/dipeptide transporter, C-terminal region CUC43_16300 PF01554 MatE CUC43_16320 PF03960 ArsC family CUC43_16325 PF03741 Integral membrane protein TerC family CUC43_16330 PF05389 Negative regulator of genetic competence (MecA) CUC43_16335 PF13091 PLD-like domain CUC43_16335 PF13396 Phospholipase_D-nuclease N-terminal CUC43_16345 PF01432 Peptidase family M3 CUC43_16345 PF08439 Oligopeptidase F CUC43_16360 PF01152 Bacterial-like globin CUC43_16365 PF01928 CYTH domain CUC43_16375 PF04607 Region found in RelA / SpoT proteins CUC43_16380 PF01513 ATP-NAD kinase CUC43_16385 PF00849 RNA pseudouridylate synthase CUC43_16395 PF00149 Calcineurin-like phosphoesterase CUC43_16400 PF01098 Cell cycle protein CUC43_16405 PF00535 Glycosyl transferase family 2 CUC43_16410 PF08241 Methyltransferase domain CUC43_16415 PF05711 Macrocin-O-methyltransferase (TylF) CUC43_16425 PF13181 Tetratricopeptide repeat CUC43_16425 PF00535 Glycosyl transferase family 2 CUC43_16445 PF00483 Nucleotidyl transferase CUC43_16450 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase CUC43_16455 PF16363 GDP-mannose 4,6 dehydratase CUC43_16460 PF04321 RmlD substrate binding domain CUC43_16480 PF07098 Protein of unknown function (DUF1360) CUC43_16500 PF00580 UvrD/REP helicase N-terminal domain CUC43_16500 PF13361 UvrD-like helicase C-terminal domain CUC43_16505 PF13673 Acetyltransferase (GNAT) domain CUC43_16515 PF00756 Putative esterase CUC43_16530 PF02368 Bacterial Ig-like domain (group 2) CUC43_16535 PF00474 Sodium:solute symporter family CUC43_16550 PF02885 Glycosyl transferase family, helical bundle domain CUC43_16550 PF00117 Glutamine amidotransferase class-I CUC43_16550 PF00591 Glycosyl transferase family, a/b domain CUC43_16555 PF00591 Glycosyl transferase family, a/b domain CUC43_16555 PF02885 Glycosyl transferase family, helical bundle domain CUC43_16560 PF00218 Indole-3-glycerol phosphate synthase CUC43_16565 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase CUC43_16570 PF00291 Pyridoxal-phosphate dependent enzyme CUC43_16575 PF00290 Tryptophan synthase alpha chain CUC43_16585 PF02652 L-lactate permease CUC43_16590 PF10042 Uncharacterized conserved protein (DUF2278) CUC43_16600 PF01385 Probable transposase CUC43_16600 PF07282 Putative transposase DNA-binding domain CUC43_16600 PF12323 Helix-turn-helix domain CUC43_16630 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC43_16630 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CUC43_16645 PF01209 ubiE/COQ5 methyltransferase family CUC43_16665 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CUC43_16665 PF02817 e3 binding domain CUC43_16665 PF00364 Biotin-requiring enzyme CUC43_16670 PF02779 Transketolase, pyrimidine binding domain CUC43_16670 PF00676 Dehydrogenase E1 component CUC43_16670 PF16870 2-oxoglutarate dehydrogenase C-terminal CUC43_16675 PF01381 Helix-turn-helix CUC43_16805 PF02899 Phage integrase, N-terminal SAM-like domain CUC43_16805 PF00589 Phage integrase family CUC43_16815 PF13649 Methyltransferase domain CUC43_16830 PF07943 Penicillin-binding protein 5, C-terminal domain CUC43_16830 PF00768 D-alanyl-D-alanine carboxypeptidase CUC43_16840 PF12389 Camelysin metallo-endopeptidase CUC43_16850 PF12389 Camelysin metallo-endopeptidase CUC43_16855 PF01381 Helix-turn-helix CUC43_16855 PF08671 Anti-repressor SinI CUC43_16865 PF05547 Immune inhibitor A peptidase M6 CUC43_16870 PF00171 Aldehyde dehydrogenase family CUC43_16875 PF08402 TOBE domain CUC43_16875 PF00005 ABC transporter CUC43_16880 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_16885 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_16890 PF13416 Bacterial extracellular solute-binding protein CUC43_16900 PF03176 MMPL family CUC43_16910 PF00849 RNA pseudouridylate synthase CUC43_16910 PF01479 S4 domain CUC43_16920 PF00188 Cysteine-rich secretory protein family CUC43_16925 PF02754 Cysteine-rich domain CUC43_16925 PF13183 4Fe-4S dicluster domain CUC43_16930 PF02913 FAD linked oxidases, C-terminal domain CUC43_16930 PF01565 FAD binding domain CUC43_16935 PF13556 PucR C-terminal helix-turn-helix domain CUC43_16935 PF05651 Putative sugar diacid recognition CUC43_16935 PF17853 GGDEF-like domain CUC43_16945 PF00486 Transcriptional regulatory protein, C terminal CUC43_16945 PF00072 Response regulator receiver domain CUC43_16950 PF00989 PAS fold CUC43_16950 PF00512 His Kinase A (phospho-acceptor) domain CUC43_16950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_16950 PF00672 HAMP domain CUC43_16950 PF18698 Histidine kinase sensor domain CUC43_16955 PF00392 Bacterial regulatory proteins, gntR family CUC43_16955 PF07729 FCD domain CUC43_16960 PF02754 Cysteine-rich domain CUC43_16965 PF02589 LUD domain CUC43_16965 PF11870 Domain of unknown function (DUF3390) CUC43_16965 PF13183 4Fe-4S dicluster domain CUC43_16970 PF02589 LUD domain CUC43_16975 PF06750 Bacterial Peptidase A24 N-terminal domain CUC43_16975 PF01478 Type IV leader peptidase family CUC43_16985 PF01226 Formate/nitrite transporter CUC43_16990 PF03741 Integral membrane protein TerC family CUC43_16995 PF02386 Cation transport protein CUC43_17000 PF00269 Small, acid-soluble spore proteins, alpha/beta type CUC43_17005 PF01575 MaoC like domain CUC43_17030 PF00561 alpha/beta hydrolase fold CUC43_17040 PF02386 Cation transport protein CUC43_17065 PF00005 ABC transporter CUC43_17065 PF08402 TOBE domain CUC43_17070 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_17075 PF13419 Haloacid dehalogenase-like hydrolase CUC43_17080 PF00266 Aminotransferase class-V CUC43_17090 PF00455 DeoR C terminal sensor domain CUC43_17090 PF08220 DeoR-like helix-turn-helix domain CUC43_17105 PF00596 Class II Aldolase and Adducin N-terminal domain CUC43_17115 PF04748 Divergent polysaccharide deacetylase CUC43_17120 PF09388 Spo0E like sporulation regulatory protein CUC43_17125 PF00512 His Kinase A (phospho-acceptor) domain CUC43_17125 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_17125 PF02743 Cache domain CUC43_17130 PF01047 MarR family CUC43_17140 PF12867 DinB superfamily CUC43_17150 PF00512 His Kinase A (phospho-acceptor) domain CUC43_17150 PF00989 PAS fold CUC43_17150 PF13188 PAS domain CUC43_17150 PF13426 PAS domain CUC43_17150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_17155 PF06508 Queuosine biosynthesis protein QueC CUC43_17160 PF01242 6-pyruvoyl tetrahydropterin synthase CUC43_17165 PF04055 Radical SAM superfamily CUC43_17170 PF14489 QueF-like protein CUC43_17175 PF09953 Uncharacterized protein conserved in bacteria (DUF2187) CUC43_17210 PF07972 NrdI Flavodoxin like CUC43_17225 PF00268 Ribonucleotide reductase, small chain CUC43_17230 PF00392 Bacterial regulatory proteins, gntR family CUC43_17235 PF00005 ABC transporter CUC43_17245 PF00005 ABC transporter CUC43_17255 PF02517 CPBP intramembrane metalloprotease CUC43_17265 PF01037 Lrp/AsnC ligand binding domain CUC43_17275 PF00857 Isochorismatase family CUC43_17285 PF17676 LD-carboxypeptidase C-terminal domain CUC43_17285 PF02016 LD-carboxypeptidase N-terminal domain CUC43_17290 PF03060 Nitronate monooxygenase CUC43_17295 PF04914 DltD protein CUC43_17300 PF00550 Phosphopantetheine attachment site CUC43_17305 PF03062 MBOAT, membrane-bound O-acyltransferase family CUC43_17310 PF00501 AMP-binding enzyme CUC43_17310 PF13193 AMP-binding enzyme C-terminal domain CUC43_17320 PF07687 Peptidase dimerisation domain CUC43_17320 PF01546 Peptidase family M20/M25/M40 CUC43_17330 PF00258 Flavodoxin CUC43_17345 PF01636 Phosphotransferase enzyme family CUC43_17370 PF01554 MatE CUC43_17375 PF02673 Bacitracin resistance protein BacA CUC43_17390 PF01047 MarR family CUC43_17400 PF00375 Sodium:dicarboxylate symporter family CUC43_17410 PF02386 Cation transport protein CUC43_17420 PF09579 Sporulation protein YtfJ (Spore_YtfJ) CUC43_17435 PF03698 Uncharacterised protein family (UPF0180) CUC43_17450 PF01063 Amino-transferase class IV CUC43_17455 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CUC43_17455 PF00205 Thiamine pyrophosphate enzyme, central domain CUC43_17455 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CUC43_17460 PF01842 ACT domain CUC43_17460 PF10369 Small subunit of acetolactate synthase CUC43_17465 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CUC43_17465 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CUC43_17470 PF08502 LeuA allosteric (dimerisation) domain CUC43_17470 PF00682 HMGL-like CUC43_17475 PF00180 Isocitrate/isopropylmalate dehydrogenase CUC43_17480 PF00330 Aconitase family (aconitate hydratase) CUC43_17485 PF00694 Aconitase C-terminal domain CUC43_17490 PF13393 Histidyl-tRNA synthetase CUC43_17495 PF01634 ATP phosphoribosyltransferase CUC43_17500 PF00815 Histidinol dehydrogenase CUC43_17505 PF00475 Imidazoleglycerol-phosphate dehydratase CUC43_17510 PF00117 Glutamine amidotransferase class-I CUC43_17515 PF00977 Histidine biosynthesis protein CUC43_17520 PF00977 Histidine biosynthesis protein CUC43_17525 PF01502 Phosphoribosyl-AMP cyclohydrolase CUC43_17530 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase CUC43_17535 PF02811 PHP domain CUC43_17545 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CUC43_17545 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CUC43_17550 PF01066 CDP-alcohol phosphatidyltransferase CUC43_17555 PF00884 Sulfatase CUC43_17560 PF00589 Phage integrase family CUC43_17560 PF14659 Phage integrase, N-terminal SAM-like domain CUC43_17575 PF01381 Helix-turn-helix CUC43_17585 PF09669 Phage regulatory protein Rha (Phage_pRha) CUC43_17585 PF03374 Phage antirepressor protein KilAC domain CUC43_17680 PF01548 Transposase CUC43_17680 PF02371 Transposase IS116/IS110/IS902 family CUC43_17700 PF00589 Phage integrase family CUC43_17705 PF01580 FtsK/SpoIIIE family CUC43_17705 PF09397 Ftsk gamma domain CUC43_17705 PF17854 FtsK alpha domain CUC43_17740 PF03354 Phage Terminase CUC43_17750 PF02371 Transposase IS116/IS110/IS902 family CUC43_17750 PF01548 Transposase CUC43_17755 PF00574 Clp protease CUC43_17820 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CUC43_17825 PF01131 DNA topoisomerase CUC43_17825 PF01751 Toprim domain CUC43_17840 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CUC43_17840 PF18277 AbrB C-terminal domain CUC43_17845 PF17209 Hfq protein CUC43_17850 PF00216 Bacterial DNA-binding protein CUC43_17870 PF00668 Condensation domain CUC43_17870 PF13193 AMP-binding enzyme C-terminal domain CUC43_17870 PF00501 AMP-binding enzyme CUC43_17870 PF00550 Phosphopantetheine attachment site CUC43_17870 PF00975 Thioesterase domain CUC43_17875 PF00975 Thioesterase domain CUC43_17880 PF13808 DDE_Tnp_1-associated CUC43_17880 PF01609 Transposase DDE domain CUC43_17895 PF01648 4'-phosphopantetheinyl transferase superfamily CUC43_17910 PF01695 IstB-like ATP binding protein CUC43_17950 PF13457 GW (Gly-Tryp) dipeptide domain CUC43_17950 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase CUC43_17960 PF00082 Subtilase family CUC43_17980 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain CUC43_17980 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain CUC43_17990 PF01507 Phosphoadenosine phosphosulfate reductase family CUC43_17995 PF14306 PUA-like domain CUC43_17995 PF01747 ATP-sulfurylase CUC43_18005 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CUC43_18005 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CUC43_18015 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CUC43_18020 PF01903 CbiX CUC43_18035 PF00209 Sodium:neurotransmitter symporter family CUC43_18045 PF00375 Sodium:dicarboxylate symporter family CUC43_18055 PF03553 Na+/H+ antiporter family CUC43_18070 PF09922 Cell wall-active antibiotics response 4TMS YvqF CUC43_18075 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_18075 PF00672 HAMP domain CUC43_18075 PF07730 Histidine kinase CUC43_18080 PF00072 Response regulator receiver domain CUC43_18080 PF00196 Bacterial regulatory proteins, luxR family CUC43_18090 PF05525 Branched-chain amino acid transport protein CUC43_18100 PF01209 ubiE/COQ5 methyltransferase family CUC43_18125 PF00175 Oxidoreductase NAD-binding domain CUC43_18125 PF00042 Globin CUC43_18125 PF00970 Oxidoreductase FAD-binding domain CUC43_18145 PF01925 Sulfite exporter TauE/SafE CUC43_18150 PF01384 Phosphate transporter family CUC43_18155 PF01865 Protein of unknown function DUF47 CUC43_18160 PF00912 Transglycosylase CUC43_18160 PF00905 Penicillin binding protein transpeptidase domain CUC43_18175 PF00512 His Kinase A (phospho-acceptor) domain CUC43_18175 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_18175 PF00989 PAS fold CUC43_18180 PF01904 Protein of unknown function DUF72 CUC43_18190 PF00589 Phage integrase family CUC43_18195 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_18195 PF16736 Single Cache-like CUC43_18195 PF00989 PAS fold CUC43_18195 PF00512 His Kinase A (phospho-acceptor) domain CUC43_18200 PF01048 Phosphorylase superfamily CUC43_18210 PF09924 Uncharacterised conserved protein (DUF2156) CUC43_18210 PF03706 Lysylphosphatidylglycerol synthase TM region CUC43_18225 PF02777 Iron/manganese superoxide dismutases, C-terminal domain CUC43_18225 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain CUC43_18230 PF07943 Penicillin-binding protein 5, C-terminal domain CUC43_18230 PF00768 D-alanyl-D-alanine carboxypeptidase CUC43_18235 PF07670 Nucleoside recognition CUC43_18240 PF07670 Nucleoside recognition CUC43_18245 PF01479 S4 domain CUC43_18245 PF00849 RNA pseudouridylate synthase CUC43_18250 PF00578 AhpC/TSA family CUC43_18255 PF05140 ResB-like family CUC43_18260 PF01578 Cytochrome C assembly protein CUC43_18265 PF00072 Response regulator receiver domain CUC43_18265 PF00486 Transcriptional regulatory protein, C terminal CUC43_18270 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_18270 PF18698 Histidine kinase sensor domain CUC43_18270 PF00512 His Kinase A (phospho-acceptor) domain CUC43_18270 PF00989 PAS fold CUC43_18270 PF00672 HAMP domain CUC43_18275 PF01923 Cobalamin adenosyltransferase CUC43_18280 PF01551 Peptidase family M23 CUC43_18290 PF12822 ECF transporter, substrate-specific component CUC43_18305 PF00270 DEAD/DEAH box helicase CUC43_18305 PF00271 Helicase conserved C-terminal domain CUC43_18310 PF02517 CPBP intramembrane metalloprotease CUC43_18320 PF00149 Calcineurin-like phosphoesterase CUC43_18325 PF13411 MerR HTH family regulatory protein CUC43_18325 PF02607 B12 binding domain CUC43_18325 PF02310 B12 binding domain CUC43_18330 PF05389 Negative regulator of genetic competence (MecA) CUC43_18335 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain CUC43_18335 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase CUC43_18360 PF00710 Asparaginase, N-terminal CUC43_18360 PF17763 Glutaminase/Asparaginase C-terminal domain CUC43_18370 PF02224 Cytidylate kinase CUC43_18375 PF00575 S1 RNA binding domain CUC43_18380 PF01070 FMN-dependent dehydrogenase CUC43_18385 PF14140 YpzI-like protein CUC43_18395 PF14045 YIEGIA protein CUC43_18405 PF01926 50S ribosome-binding GTPase CUC43_18405 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal CUC43_18410 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus CUC43_18410 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus CUC43_18420 PF10966 Protein of unknown function (DUF2768) CUC43_18430 PF09547 Stage IV sporulation protein A (spore_IV_A) CUC43_18435 PF00216 Bacterial DNA-binding protein CUC43_18440 PF01227 GTP cyclohydrolase I CUC43_18445 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 CUC43_18450 PF01209 ubiE/COQ5 methyltransferase family CUC43_18455 PF00348 Polyprenyl synthetase CUC43_18460 PF00334 Nucleoside diphosphate kinase CUC43_18465 PF01264 Chorismate synthase CUC43_18470 PF01761 3-dehydroquinate synthase CUC43_18475 PF00155 Aminotransferase class I and II CUC43_18485 PF08858 IDEAL domain CUC43_18485 PF08864 UPF0302 domain CUC43_18490 PF10673 Protein of unknown function (DUF2487) CUC43_18495 PF00355 Rieske [2Fe-2S] domain CUC43_18500 PF00033 Cytochrome b/b6/petB CUC43_18505 PF13442 Cytochrome C oxidase, cbb3-type, subunit III CUC43_18505 PF00032 Cytochrome b(C-terminal)/b6/petD CUC43_18515 PF07187 Protein of unknown function (DUF1405) CUC43_18525 PF09577 Sporulation protein YpjB (SpoYpjB) CUC43_18530 PF04298 Putative neutral zinc metallopeptidase CUC43_18540 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CUC43_18540 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CUC43_18550 PF03819 MazG nucleotide pyrophosphohydrolase domain CUC43_18555 PF01113 Dihydrodipicolinate reductase, N-terminus CUC43_18555 PF05173 Dihydrodipicolinate reductase, C-terminus CUC43_18570 PF02585 GlcNAc-PI de-N-acetylase CUC43_18575 PF13439 Glycosyltransferase Family 4 CUC43_18575 PF00534 Glycosyl transferases group 1 CUC43_18580 PF13735 tRNA nucleotidyltransferase domain 2 putative CUC43_18580 PF01743 Poly A polymerase head domain CUC43_18580 PF12627 Probable RNA and SrmB- binding site of polymerase A CUC43_18585 PF08279 HTH domain CUC43_18585 PF02237 Biotin protein ligase C terminal domain CUC43_18585 PF03099 Biotin/lipoate A/B protein ligase family CUC43_18600 PF02548 Ketopantoate hydroxymethyltransferase CUC43_18605 PF02569 Pantoate-beta-alanine ligase CUC43_18610 PF02261 Aspartate decarboxylase CUC43_18615 PF13307 Helicase C-terminal domain CUC43_18615 PF04851 Type III restriction enzyme, res subunit CUC43_18615 PF00929 Exonuclease CUC43_18620 PF14084 Protein of unknown function (DUF4264) CUC43_18630 PF00155 Aminotransferase class I and II CUC43_18635 PF07261 Replication initiation and membrane attachment CUC43_18640 PF10576 Iron-sulfur binding domain of endonuclease III CUC43_18640 PF00633 Helix-hairpin-helix motif CUC43_18640 PF00730 HhH-GPD superfamily base excision DNA repair protein CUC43_18650 PF00905 Penicillin binding protein transpeptidase domain CUC43_18650 PF00912 Transglycosylase CUC43_18655 PF03838 Recombination protein U CUC43_18660 PF10720 Protein of unknown function (DUF2515) CUC43_18695 PF06908 YspA SLOG family CUC43_18700 PF05103 DivIVA protein CUC43_18710 PF01170 Putative RNA methylase family UPF0020 CUC43_18710 PF02926 THUMP domain CUC43_18720 PF13307 Helicase C-terminal domain CUC43_18725 PF02074 Carboxypeptidase Taq (M32) metallopeptidase CUC43_18735 PF00557 Metallopeptidase family M24 CUC43_18740 PF00156 Phosphoribosyl transferase domain CUC43_18745 PF00860 Permease family CUC43_18750 PF04235 Protein of unknown function (DUF418) CUC43_18760 PF00350 Dynamin family CUC43_18770 PF00583 Acetyltransferase (GNAT) family CUC43_18775 PF10752 Protein of unknown function (DUF2533) CUC43_18780 PF00581 Rhodanese-like domain CUC43_18805 PF03738 Glutathionylspermidine synthase preATP-grasp CUC43_18815 PF00689 Cation transporting ATPase, C-terminus CUC43_18815 PF00690 Cation transporter/ATPase, N-terminus CUC43_18820 PF01367 5'-3' exonuclease, C-terminal SAM fold CUC43_18820 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CUC43_18835 PF13673 Acetyltransferase (GNAT) domain CUC43_18835 PF18014 Acetyltransferase (GNAT) domain CUC43_18855 PF13456 Reverse transcriptase-like CUC43_18860 PF01263 Aldose 1-epimerase CUC43_18885 PF00313 'Cold-shock' DNA-binding domain CUC43_18890 PF08892 YqcI/YcgG family CUC43_18895 PF01810 LysE type translocator CUC43_18910 PF04341 Protein of unknown function, DUF485 CUC43_18915 PF00474 Sodium:solute symporter family CUC43_18920 PF00202 Aminotransferase class-III CUC43_18935 PF00999 Sodium/hydrogen exchanger family CUC43_18940 PF17770 Ribonuclease J C-terminal domain CUC43_18940 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CUC43_18940 PF00753 Metallo-beta-lactamase superfamily CUC43_18945 PF13411 MerR HTH family regulatory protein CUC43_18945 PF06445 GyrI-like small molecule binding domain CUC43_18955 PF04239 Protein of unknown function (DUF421) CUC43_18960 PF02698 DUF218 domain CUC43_18970 PF00881 Nitroreductase family CUC43_19035 PF17209 Hfq protein CUC43_19045 PF01618 MotA/TolQ/ExbB proton channel family CUC43_19050 PF00691 OmpA family CUC43_19050 PF13677 Membrane MotB of proton-channel complex MotA/MotB CUC43_19055 PF00072 Response regulator receiver domain CUC43_19060 PF01584 CheW-like domain CUC43_19060 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_19060 PF01627 Hpt domain CUC43_19060 PF07194 P2 response regulator binding domain CUC43_19060 PF02895 Signal transducing histidine kinase, homodimeric domain CUC43_19065 PF04509 CheC-like family CUC43_19065 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CUC43_19080 PF03705 CheR methyltransferase, all-alpha domain CUC43_19080 PF01739 CheR methyltransferase, SAM binding domain CUC43_19100 PF00460 Flagella basal body rod protein CUC43_19100 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CUC43_19105 PF00669 Bacterial flagellin N-terminal helical region CUC43_19105 PF00700 Bacterial flagellin C-terminal helical region CUC43_19110 PF07196 Flagellin hook IN motif CUC43_19110 PF07195 Flagellar hook-associated protein 2 C-terminus CUC43_19110 PF02465 Flagellar hook-associated protein 2 N-terminus CUC43_19125 PF00460 Flagella basal body rod protein CUC43_19130 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CUC43_19130 PF00460 Flagella basal body rod protein CUC43_19135 PF02049 Flagellar hook-basal body complex protein FliE CUC43_19145 PF14841 FliG middle domain CUC43_19145 PF14842 FliG N-terminal domain CUC43_19145 PF01706 FliG C-terminal domain CUC43_19155 PF18269 T3SS EscN ATPase C-terminal domain CUC43_19155 PF02874 ATP synthase alpha/beta family, beta-barrel domain CUC43_19155 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain CUC43_19175 PF07559 Flagellar basal body protein FlaE CUC43_19175 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CUC43_19175 PF00460 Flagella basal body rod protein CUC43_19190 PF00072 Response regulator receiver domain CUC43_19190 PF01584 CheW-like domain CUC43_19195 PF12181 DNA binding domain of the motility gene repressor (MogR) CUC43_19200 PF00669 Bacterial flagellin N-terminal helical region CUC43_19200 PF00700 Bacterial flagellin C-terminal helical region CUC43_19205 PF00669 Bacterial flagellin N-terminal helical region CUC43_19205 PF00700 Bacterial flagellin C-terminal helical region CUC43_19210 PF01464 Transglycosylase SLT domain CUC43_19220 PF02154 Flagellar motor switch protein FliM CUC43_19220 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CUC43_19225 PF04509 CheC-like family CUC43_19225 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term CUC43_19235 PF00813 FliP family CUC43_19240 PF01313 Bacterial export proteins, family 3 CUC43_19250 PF01312 FlhB HrpN YscU SpaS Family CUC43_19255 PF00771 FHIPEP family CUC43_19260 PF00448 SRP54-type protein, GTPase domain CUC43_19265 PF06429 Flagellar basal body rod FlgEFG protein C-terminal CUC43_19265 PF00460 Flagella basal body rod protein CUC43_19270 PF01411 tRNA synthetases class II (A) CUC43_19270 PF02272 DHHA1 domain CUC43_19270 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CUC43_19295 PF17932 Tetracyclin repressor-like, C-terminal domain CUC43_19295 PF00440 Bacterial regulatory proteins, tetR family CUC43_19300 PF17329 Family of unknown function (DUF5367) CUC43_19315 PF03992 Antibiotic biosynthesis monooxygenase CUC43_19325 PF05738 Cna protein B-type domain CUC43_19325 PF05737 Collagen binding domain CUC43_19325 PF17802 Prealbumin-like fold domain CUC43_19330 PF04203 Sortase domain CUC43_19335 PF04203 Sortase domain CUC43_19340 PF08141 Small acid-soluble spore protein H family CUC43_19370 PF00005 ABC transporter CUC43_19370 PF08402 TOBE domain CUC43_19380 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_19395 PF10787 Uncharacterised protein from bacillus cereus group CUC43_19420 PF13021 Domain of unknown function (DUF3885) CUC43_19425 PF02371 Transposase IS116/IS110/IS902 family CUC43_19425 PF01548 Transposase CUC43_19435 PF00300 Histidine phosphatase superfamily (branch 1) CUC43_19450 PF01047 MarR family CUC43_19460 PF00733 Asparagine synthase CUC43_19460 PF13537 Glutamine amidotransferase domain CUC43_19480 PF16916 Dimerisation domain of Zinc Transporter CUC43_19480 PF01545 Cation efflux family CUC43_19490 PF00392 Bacterial regulatory proteins, gntR family CUC43_19490 PF07729 FCD domain CUC43_19495 PF00892 EamA-like transporter family CUC43_19500 PF00535 Glycosyl transferase family 2 CUC43_19505 PF03553 Na+/H+ antiporter family CUC43_19510 PF00206 Lyase CUC43_19510 PF10415 Fumarase C C-terminus CUC43_19530 PF01554 MatE CUC43_19540 PF03575 Peptidase family S51 CUC43_19560 PF02683 Cytochrome C biogenesis protein transmembrane region CUC43_19565 PF00578 AhpC/TSA family CUC43_19580 PF00291 Pyridoxal-phosphate dependent enzyme CUC43_19585 PF04286 Protein of unknown function (DUF445) CUC43_19615 PF00196 Bacterial regulatory proteins, luxR family CUC43_19615 PF00072 Response regulator receiver domain CUC43_19620 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_19620 PF07730 Histidine kinase CUC43_19620 PF13492 GAF domain CUC43_19620 PF13185 GAF domain CUC43_19625 PF00005 ABC transporter CUC43_19640 PF13091 PLD-like domain CUC43_19645 PF00696 Amino acid kinase family CUC43_19650 PF00375 Sodium:dicarboxylate symporter family CUC43_19655 PF10415 Fumarase C C-terminus CUC43_19655 PF00206 Lyase CUC43_19660 PF00390 Malic enzyme, N-terminal domain CUC43_19660 PF03949 Malic enzyme, NAD binding domain CUC43_19665 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_19670 PF00072 Response regulator receiver domain CUC43_19670 PF08664 YcbB domain CUC43_19675 PF00176 SNF2 family N-terminal domain CUC43_19675 PF00271 Helicase conserved C-terminal domain CUC43_19675 PF12419 SNF2 Helicase protein CUC43_19695 PF03590 Aspartate-ammonia ligase CUC43_19705 PF13840 ACT domain CUC43_19705 PF00696 Amino acid kinase family CUC43_19720 PF13761 Domain of unknown function (DUF4166) CUC43_19725 PF14158 YndJ-like protein CUC43_19730 PF00293 NUDIX domain CUC43_19755 PF13302 Acetyltransferase (GNAT) domain CUC43_19760 PF07690 Major Facilitator Superfamily CUC43_19780 PF03976 Polyphosphate kinase 2 (PPK2) CUC43_19790 PF07690 Major Facilitator Superfamily CUC43_19795 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CUC43_19795 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CUC43_19815 PF16360 GTP-binding GTPase Middle Region CUC43_19815 PF13167 GTP-binding GTPase N-terminal CUC43_19815 PF01926 50S ribosome-binding GTPase CUC43_19820 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CUC43_19825 PF07690 Major Facilitator Superfamily CUC43_19830 PF00291 Pyridoxal-phosphate dependent enzyme CUC43_19845 PF14667 Polysaccharide biosynthesis C-terminal domain CUC43_19845 PF01943 Polysaccharide biosynthesis protein CUC43_19850 PF00209 Sodium:neurotransmitter symporter family CUC43_19855 PF03422 Carbohydrate binding module (family 6) CUC43_19855 PF00457 Glycosyl hydrolases family 11 CUC43_19855 PF01522 Polysaccharide deacetylase CUC43_19865 PF04239 Protein of unknown function (DUF421) CUC43_19895 PF01625 Peptide methionine sulfoxide reductase CUC43_19900 PF01063 Amino-transferase class IV CUC43_19905 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CUC43_19905 PF00205 Thiamine pyrophosphate enzyme, central domain CUC43_19905 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CUC43_19915 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain CUC43_19915 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain CUC43_19920 PF00920 Dehydratase family CUC43_19925 PF00585 C-terminal regulatory domain of Threonine dehydratase CUC43_19925 PF00291 Pyridoxal-phosphate dependent enzyme CUC43_19940 PF09587 Bacterial capsule synthesis protein PGA_cap CUC43_19955 PF07690 Major Facilitator Superfamily CUC43_19960 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase CUC43_19970 PF04397 LytTr DNA-binding domain CUC43_19970 PF00072 Response regulator receiver domain CUC43_19975 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain CUC43_19975 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain CUC43_19990 PF01979 Amidohydrolase family CUC43_19995 PF14436 Bacterial EndoU nuclease CUC43_19995 PF04740 LXG domain of WXG superfamily CUC43_20010 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CUC43_20040 PF13302 Acetyltransferase (GNAT) domain CUC43_20045 PF00486 Transcriptional regulatory protein, C terminal CUC43_20045 PF00072 Response regulator receiver domain CUC43_20050 PF00512 His Kinase A (phospho-acceptor) domain CUC43_20050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_20060 PF01566 Natural resistance-associated macrophage protein CUC43_20080 PF02558 Ketopantoate reductase PanE/ApbA CUC43_20080 PF08546 Ketopantoate reductase PanE/ApbA C terminal CUC43_20085 PF13520 Amino acid permease CUC43_20100 PF05791 Bacillus haemolytic enterotoxin (HBL) CUC43_20110 PF05791 Bacillus haemolytic enterotoxin (HBL) CUC43_20115 PF01810 LysE type translocator CUC43_20125 PF00440 Bacterial regulatory proteins, tetR family CUC43_20130 PF04198 Putative sugar-binding domain CUC43_20135 PF01791 DeoC/LacD family aldolase CUC43_20140 PF07662 Na+ dependent nucleoside transporter C-terminus CUC43_20140 PF01773 Na+ dependent nucleoside transporter N-terminus CUC43_20145 PF00591 Glycosyl transferase family, a/b domain CUC43_20145 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain CUC43_20145 PF02885 Glycosyl transferase family, helical bundle domain CUC43_20150 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CUC43_20160 PF07301 Protein of unknown function (DUF1453) CUC43_20165 PF05979 Bacterial protein of unknown function (DUF896) CUC43_20170 PF00557 Metallopeptidase family M24 CUC43_20170 PF05195 Aminopeptidase P, N-terminal domain CUC43_20205 PF02525 Flavodoxin-like fold CUC43_20210 PF05525 Branched-chain amino acid transport protein CUC43_20225 PF05425 Copper resistance protein D CUC43_20225 PF04234 CopC domain CUC43_20225 PF13115 YtkA-like CUC43_20230 PF07987 Domain of unkown function (DUF1775) CUC43_20240 PF00892 EamA-like transporter family CUC43_20245 PF03466 LysR substrate binding domain CUC43_20245 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC43_20250 PF02082 Transcriptional regulator CUC43_20255 PF01323 DSBA-like thioredoxin domain CUC43_20260 PF00881 Nitroreductase family CUC43_20270 PF01425 Amidase CUC43_20275 PF01594 AI-2E family transporter CUC43_20280 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain CUC43_20280 PF00056 lactate/malate dehydrogenase, NAD binding domain CUC43_20285 PF01593 Flavin containing amine oxidoreductase CUC43_20310 PF01638 HxlR-like helix-turn-helix CUC43_20315 PF02525 Flavodoxin-like fold CUC43_20320 PF00501 AMP-binding enzyme CUC43_20320 PF13193 AMP-binding enzyme C-terminal domain CUC43_20325 PF13302 Acetyltransferase (GNAT) domain CUC43_20345 PF02567 Phenazine biosynthesis-like protein CUC43_20380 PF00248 Aldo/keto reductase family CUC43_20385 PF01638 HxlR-like helix-turn-helix CUC43_20390 PF01638 HxlR-like helix-turn-helix CUC43_20400 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CUC43_20400 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CUC43_20405 PF07702 UTRA domain CUC43_20405 PF00392 Bacterial regulatory proteins, gntR family CUC43_20410 PF01638 HxlR-like helix-turn-helix CUC43_20420 PF03960 ArsC family CUC43_20455 PF02371 Transposase IS116/IS110/IS902 family CUC43_20455 PF01548 Transposase CUC43_20485 PF00535 Glycosyl transferase family 2 CUC43_20500 PF02371 Transposase IS116/IS110/IS902 family CUC43_20500 PF01548 Transposase CUC43_20525 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CUC43_20530 PF03928 Haem-degrading CUC43_20540 PF07690 Major Facilitator Superfamily CUC43_20545 PF00248 Aldo/keto reductase family CUC43_20560 PF00144 Beta-lactamase CUC43_20565 PF01638 HxlR-like helix-turn-helix CUC43_20570 PF00925 GTP cyclohydrolase II CUC43_20575 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CUC43_20575 PF01872 RibD C-terminal domain CUC43_20580 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) CUC43_20585 PF00672 HAMP domain CUC43_20585 PF12729 Four helix bundle sensory module for signal transduction CUC43_20585 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CUC43_20595 PF07504 Fungalysin/Thermolysin Propeptide Motif CUC43_20595 PF03413 Peptidase propeptide and YPEB domain CUC43_20595 PF02868 Thermolysin metallopeptidase, alpha-helical domain CUC43_20595 PF01447 Thermolysin metallopeptidase, catalytic domain CUC43_20600 PF00106 short chain dehydrogenase CUC43_20615 PF00550 Phosphopantetheine attachment site CUC43_20615 PF00698 Acyl transferase domain CUC43_20615 PF08240 Alcohol dehydrogenase GroES-like domain CUC43_20615 PF00107 Zinc-binding dehydrogenase CUC43_20615 PF16197 Ketoacyl-synthetase C-terminal extension CUC43_20615 PF00109 Beta-ketoacyl synthase, N-terminal domain CUC43_20615 PF02801 Beta-ketoacyl synthase, C-terminal domain CUC43_20615 PF08659 KR domain CUC43_20615 PF14765 Polyketide synthase dehydratase CUC43_20620 PF00106 short chain dehydrogenase CUC43_20625 PF13411 MerR HTH family regulatory protein CUC43_20630 PF00296 Luciferase-like monooxygenase CUC43_20635 PF00107 Zinc-binding dehydrogenase CUC43_20635 PF08240 Alcohol dehydrogenase GroES-like domain CUC43_20640 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CUC43_20640 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CUC43_20645 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain CUC43_20645 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain CUC43_20650 PF02780 Transketolase, C-terminal domain CUC43_20650 PF02779 Transketolase, pyrimidine binding domain CUC43_20650 PF00456 Transketolase, thiamine diphosphate binding domain CUC43_20655 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CUC43_20655 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CUC43_20660 PF00923 Transaldolase/Fructose-6-phosphate aldolase CUC43_20665 PF02447 GntP family permease CUC43_20675 PF10282 Lactonase, 7-bladed beta-propeller CUC43_20680 PF06906 Protein of unknown function (DUF1272) CUC43_20685 PF00805 Pentapeptide repeats (8 copies) CUC43_20690 PF00892 EamA-like transporter family CUC43_20700 PF01370 NAD dependent epimerase/dehydratase family CUC43_20715 PF16363 GDP-mannose 4,6 dehydratase CUC43_20720 PF00483 Nucleotidyl transferase CUC43_20730 PF13411 MerR HTH family regulatory protein CUC43_20735 PF03471 Transporter associated domain CUC43_20735 PF00571 CBS domain CUC43_20735 PF01595 Cyclin M transmembrane N-terminal domain CUC43_20745 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CUC43_20760 PF07690 Major Facilitator Superfamily CUC43_20770 PF08003 Protein of unknown function (DUF1698) CUC43_20800 PF01594 AI-2E family transporter CUC43_20805 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CUC43_20805 PF13288 DXP reductoisomerase C-terminal domain CUC43_20805 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CUC43_20810 PF00579 tRNA synthetases class I (W and Y) CUC43_20815 PF12464 Maltose acetyltransferase CUC43_20815 PF14602 Hexapeptide repeat of succinyl-transferase CUC43_20820 PF00480 ROK family CUC43_20825 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CUC43_20830 PF00293 NUDIX domain CUC43_20830 PF13344 Haloacid dehalogenase-like hydrolase CUC43_20860 PF13419 Haloacid dehalogenase-like hydrolase CUC43_20885 PF00005 ABC transporter CUC43_20910 PF00391 PEP-utilising enzyme, mobile domain CUC43_20910 PF00224 Pyruvate kinase, barrel domain CUC43_20910 PF02887 Pyruvate kinase, alpha/beta domain CUC43_20920 PF00881 Nitroreductase family CUC43_20925 PF01638 HxlR-like helix-turn-helix CUC43_20940 PF03129 Anticodon binding domain CUC43_20940 PF13393 Histidyl-tRNA synthetase CUC43_20945 PF04073 Aminoacyl-tRNA editing domain CUC43_20980 PF04231 Endonuclease I CUC43_20985 PF03606 C4-dicarboxylate anaerobic carrier CUC43_20990 PF03737 Aldolase/RraA CUC43_21005 PF02361 Cobalt transport protein CUC43_21010 PF00005 ABC transporter CUC43_21020 PF14256 YwiC-like protein CUC43_21040 PF02525 Flavodoxin-like fold CUC43_21050 PF02667 Short chain fatty acid transporter CUC43_21060 PF01289 Thiol-activated cytolysin CUC43_21060 PF17440 Thiol-activated cytolysin beta sandwich domain CUC43_21070 PF00440 Bacterial regulatory proteins, tetR family CUC43_21075 PF00893 Small Multidrug Resistance protein CUC43_21080 PF17314 Family of unknown function (DUF5360) CUC43_21095 PF13732 Domain of unknown function (DUF4162) CUC43_21095 PF00005 ABC transporter CUC43_21100 PF12679 ABC-2 family transporter protein CUC43_21115 PF07690 Major Facilitator Superfamily CUC43_21120 PF01047 MarR family CUC43_21125 PF12697 Alpha/beta hydrolase family CUC43_21135 PF07690 Major Facilitator Superfamily CUC43_21140 PF14044 NETI protein CUC43_21145 PF09587 Bacterial capsule synthesis protein PGA_cap CUC43_21150 PF02557 D-alanyl-D-alanine carboxypeptidase CUC43_21185 PF01510 N-acetylmuramoyl-L-alanine amidase CUC43_21185 PF01476 LysM domain CUC43_21185 PF01471 Putative peptidoglycan binding domain CUC43_21195 PF01804 Penicillin amidase CUC43_21200 PF12833 Helix-turn-helix domain CUC43_21200 PF01497 Periplasmic binding protein CUC43_21210 PF07883 Cupin domain CUC43_21225 PF00266 Aminotransferase class-V CUC43_21230 PF01842 ACT domain CUC43_21230 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain CUC43_21230 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain CUC43_21250 PF02016 LD-carboxypeptidase N-terminal domain CUC43_21250 PF17676 LD-carboxypeptidase C-terminal domain CUC43_21270 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC43_21270 PF03466 LysR substrate binding domain CUC43_21275 PF02754 Cysteine-rich domain CUC43_21280 PF13183 4Fe-4S dicluster domain CUC43_21280 PF02589 LUD domain CUC43_21280 PF11870 Domain of unknown function (DUF3390) CUC43_21285 PF02589 LUD domain CUC43_21290 PF07690 Major Facilitator Superfamily CUC43_21295 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CUC43_21295 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CUC43_21300 PF04299 Putative FMN-binding domain CUC43_21305 PF00583 Acetyltransferase (GNAT) family CUC43_21310 PF01047 MarR family CUC43_21320 PF00072 Response regulator receiver domain CUC43_21320 PF00486 Transcriptional regulatory protein, C terminal CUC43_21325 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_21325 PF00672 HAMP domain CUC43_21325 PF00512 His Kinase A (phospho-acceptor) domain CUC43_21345 PF02687 FtsX-like permease family CUC43_21350 PF00005 ABC transporter CUC43_21365 PF04072 Leucine carboxyl methyltransferase CUC43_21370 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CUC43_21370 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CUC43_21380 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family CUC43_21385 PF00753 Metallo-beta-lactamase superfamily CUC43_21410 PF00291 Pyridoxal-phosphate dependent enzyme CUC43_21445 PF01810 LysE type translocator CUC43_21480 PF09962 Uncharacterized conserved protein (DUF2196) CUC43_21490 PF07690 Major Facilitator Superfamily CUC43_21495 PF00667 FAD binding domain CUC43_21495 PF00067 Cytochrome P450 CUC43_21495 PF00175 Oxidoreductase NAD-binding domain CUC43_21495 PF00258 Flavodoxin CUC43_21500 PF12802 MarR family CUC43_21535 PF00144 Beta-lactamase CUC43_21545 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CUC43_21560 PF01037 Lrp/AsnC ligand binding domain CUC43_21570 PF00440 Bacterial regulatory proteins, tetR family CUC43_21575 PF07690 Major Facilitator Superfamily CUC43_21580 PF00440 Bacterial regulatory proteins, tetR family CUC43_21580 PF18665 Tetracyclin repressor-like, C-terminal domain CUC43_21585 PF07993 Male sterility protein CUC43_21585 PF00550 Phosphopantetheine attachment site CUC43_21605 PF01872 RibD C-terminal domain CUC43_21620 PF01022 Bacterial regulatory protein, arsR family CUC43_21625 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CUC43_21630 PF01758 Sodium Bile acid symporter family CUC43_21635 PF01451 Low molecular weight phosphotyrosine protein phosphatase CUC43_21655 PF00072 Response regulator receiver domain CUC43_21655 PF04397 LytTr DNA-binding domain CUC43_21665 PF02687 FtsX-like permease family CUC43_21670 PF00005 ABC transporter CUC43_21675 PF12996 DUF based on E. rectale Gene description (DUF3880) CUC43_21715 PF01040 UbiA prenyltransferase family CUC43_21735 PF10057 Uncharacterized conserved protein (DUF2294) CUC43_21740 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus CUC43_21740 PF00361 Proton-conducting membrane transporter CUC43_21745 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) CUC43_21755 PF03441 FAD binding domain of DNA photolyase CUC43_21755 PF00875 DNA photolyase CUC43_21795 PF00892 EamA-like transporter family CUC43_21800 PF03466 LysR substrate binding domain CUC43_21800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC43_21835 PF03466 LysR substrate binding domain CUC43_21835 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC43_21850 PF13520 Amino acid permease CUC43_21855 PF00269 Small, acid-soluble spore proteins, alpha/beta type CUC43_21860 PF01554 MatE CUC43_21865 PF01266 FAD dependent oxidoreductase CUC43_21865 PF00355 Rieske [2Fe-2S] domain CUC43_21875 PF00144 Beta-lactamase CUC43_21880 PF00067 Cytochrome P450 CUC43_21890 PF01235 Sodium:alanine symporter family CUC43_21895 PF04960 Glutaminase CUC43_21900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_21905 PF00072 Response regulator receiver domain CUC43_21905 PF08664 YcbB domain CUC43_21915 PF03323 Bacillus/Clostridium GerA spore germination protein CUC43_21920 PF03845 Spore germination protein CUC43_21925 PF05504 Spore germination B3/ GerAC like, C-terminal CUC43_21930 PF03807 NADP oxidoreductase coenzyme F420-dependent CUC43_21930 PF14748 Pyrroline-5-carboxylate reductase dimerisation CUC43_21935 PF13520 Amino acid permease CUC43_21940 PF08459 UvrC Helix-hairpin-helix N-terminal CUC43_21940 PF01541 GIY-YIG catalytic domain CUC43_21940 PF12826 Helix-hairpin-helix motif CUC43_21940 PF02151 UvrB/uvrC motif CUC43_21950 PF01381 Helix-turn-helix CUC43_21955 PF17763 Glutaminase/Asparaginase C-terminal domain CUC43_21955 PF00710 Asparaginase, N-terminal CUC43_21960 PF00206 Lyase CUC43_21960 PF10415 Fumarase C C-terminus CUC43_21970 PF00107 Zinc-binding dehydrogenase CUC43_21970 PF08240 Alcohol dehydrogenase GroES-like domain CUC43_21970 PF13823 Alcohol dehydrogenase GroES-associated CUC43_21975 PF00269 Small, acid-soluble spore proteins, alpha/beta type CUC43_21980 PF11553 Protein of unknown function (DUF3231) CUC43_21985 PF10710 Protein of unknown function (DUF2512) CUC43_21990 PF00753 Metallo-beta-lactamase superfamily CUC43_22000 PF00391 PEP-utilising enzyme, mobile domain CUC43_22000 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain CUC43_22005 PF00440 Bacterial regulatory proteins, tetR family CUC43_22015 PF02915 Rubrerythrin CUC43_22020 PF10903 Protein of unknown function (DUF2691) CUC43_22050 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CUC43_22050 PF02770 Acyl-CoA dehydrogenase, middle domain CUC43_22050 PF08028 Acyl-CoA dehydrogenase, C-terminal domain CUC43_22065 PF07454 Stage II sporulation protein P (SpoIIP) CUC43_22070 PF03932 CutC family CUC43_22075 PF10502 Signal peptidase, peptidase S26 CUC43_22080 PF01614 Bacterial transcriptional regulator CUC43_22080 PF09339 IclR helix-turn-helix domain CUC43_22085 PF02682 Carboxyltransferase domain, subdomain C and D CUC43_22090 PF02626 Carboxyltransferase domain, subdomain A and B CUC43_22095 PF03746 LamB/YcsF family CUC43_22110 PF01470 Pyroglutamyl peptidase CUC43_22120 PF02146 Sir2 family CUC43_22135 PF10502 Signal peptidase, peptidase S26 CUC43_22145 PF00293 NUDIX domain CUC43_22160 PF10898 Protein of unknown function (DUF2716) CUC43_22165 PF08713 DNA alkylation repair enzyme CUC43_22175 PF00324 Amino acid permease CUC43_22185 PF01925 Sulfite exporter TauE/SafE CUC43_22215 PF13031 Protein of unknown function (DUF3892) CUC43_22220 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 CUC43_22225 PF00155 Aminotransferase class I and II CUC43_22225 PF00392 Bacterial regulatory proteins, gntR family CUC43_22230 PF00892 EamA-like transporter family CUC43_22245 PF00583 Acetyltransferase (GNAT) family CUC43_22250 PF12833 Helix-turn-helix domain CUC43_22275 PF00005 ABC transporter CUC43_22280 PF16363 GDP-mannose 4,6 dehydratase CUC43_22285 PF05406 WGR domain CUC43_22290 PF00293 NUDIX domain CUC43_22300 PF14492 Elongation Factor G, domain II CUC43_22300 PF00679 Elongation factor G C-terminus CUC43_22300 PF00009 Elongation factor Tu GTP binding domain CUC43_22300 PF03764 Elongation factor G, domain IV CUC43_22310 PF01047 MarR family CUC43_22315 PF00881 Nitroreductase family CUC43_22325 PF17863 AAA lid domain CUC43_22325 PF07726 ATPase family associated with various cellular activities (AAA) CUC43_22345 PF00144 Beta-lactamase CUC43_22350 PF13382 Adenine deaminase C-terminal domain CUC43_22350 PF01979 Amidohydrolase family CUC43_22360 PF00199 Catalase CUC43_22360 PF06628 Catalase-related immune-responsive CUC43_22365 PF00202 Aminotransferase class-III CUC43_22370 PF07690 Major Facilitator Superfamily CUC43_22385 PF07726 ATPase family associated with various cellular activities (AAA) CUC43_22385 PF17863 AAA lid domain CUC43_22405 PF12681 Glyoxalase-like domain CUC43_22425 PF00072 Response regulator receiver domain CUC43_22425 PF04397 LytTr DNA-binding domain CUC43_22435 PF10086 YhfC intramembrane metalloprotease CUC43_22450 PF13443 Cro/C1-type HTH DNA-binding domain CUC43_22455 PF11188 Protein of unknown function (DUF2975) CUC43_22460 PF00245 Alkaline phosphatase CUC43_22465 PF05547 Immune inhibitor A peptidase M6 CUC43_22470 PF00487 Fatty acid desaturase CUC43_22475 PF01139 tRNA-splicing ligase RtcB CUC43_22485 PF00324 Amino acid permease CUC43_22495 PF09339 IclR helix-turn-helix domain CUC43_22495 PF01614 Bacterial transcriptional regulator CUC43_22500 PF01546 Peptidase family M20/M25/M40 CUC43_22505 PF03807 NADP oxidoreductase coenzyme F420-dependent CUC43_22505 PF14748 Pyrroline-5-carboxylate reductase dimerisation CUC43_22515 PF00696 Amino acid kinase family CUC43_22515 PF01472 PUA domain CUC43_22520 PF00171 Aldehyde dehydrogenase family CUC43_22525 PF01773 Na+ dependent nucleoside transporter N-terminus CUC43_22525 PF07662 Na+ dependent nucleoside transporter C-terminus CUC43_22545 PF03992 Antibiotic biosynthesis monooxygenase CUC43_22555 PF01548 Transposase CUC43_22555 PF02371 Transposase IS116/IS110/IS902 family CUC43_22580 PF01791 DeoC/LacD family aldolase CUC43_22590 PF02782 FGGY family of carbohydrate kinases, C-terminal domain CUC43_22590 PF00370 FGGY family of carbohydrate kinases, N-terminal domain CUC43_22595 PF04198 Putative sugar-binding domain CUC43_22595 PF00325 Bacterial regulatory proteins, crp family CUC43_22600 PF00005 ABC transporter CUC43_22605 PF02653 Branched-chain amino acid transport system / permease component CUC43_22610 PF02653 Branched-chain amino acid transport system / permease component CUC43_22615 PF13407 Periplasmic binding protein domain CUC43_22620 PF06039 Malate:quinone oxidoreductase (Mqo) CUC43_22640 PF01476 LysM domain CUC43_22640 PF06725 3D domain CUC43_22650 PF01636 Phosphotransferase enzyme family CUC43_22675 PF01817 Chorismate mutase type II CUC43_22675 PF00793 DAHP synthetase I family CUC43_22685 PF01264 Chorismate synthase CUC43_22690 PF00155 Aminotransferase class I and II CUC43_22695 PF01842 ACT domain CUC43_22695 PF02153 Prephenate dehydrogenase CUC43_22700 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) CUC43_22710 PF16295 Tetracyclin repressor-like, C-terminal domain CUC43_22710 PF00440 Bacterial regulatory proteins, tetR family CUC43_22715 PF03176 MMPL family CUC43_22725 PF12848 ABC transporter CUC43_22725 PF00005 ABC transporter CUC43_22735 PF00884 Sulfatase CUC43_22740 PF03741 Integral membrane protein TerC family CUC43_22745 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CUC43_22755 PF03611 PTS system sugar-specific permease component CUC43_22765 PF01522 Polysaccharide deacetylase CUC43_22790 PF12867 DinB superfamily CUC43_22795 PF13536 Putative multidrug resistance efflux transporter CUC43_22820 PF02522 Aminoglycoside 3-N-acetyltransferase CUC43_22840 PF00293 NUDIX domain CUC43_22840 PF13344 Haloacid dehalogenase-like hydrolase CUC43_22860 PF00005 ABC transporter CUC43_22865 PF09084 NMT1/THI5 like CUC43_22870 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_22875 PF00296 Luciferase-like monooxygenase CUC43_22890 PF01594 AI-2E family transporter CUC43_22945 PF00005 ABC transporter CUC43_22965 PF03630 Fumble CUC43_22970 PF07977 FabA-like domain CUC43_22975 PF00155 Aminotransferase class I and II CUC43_23030 PF04226 Transglycosylase associated protein CUC43_23050 PF07690 Major Facilitator Superfamily CUC43_23055 PF12793 Sugar transport-related sRNA regulator N-term CUC43_23055 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CUC43_23060 PF13171 Protein of unknown function (DUF4004) CUC43_23065 PF04519 Polymer-forming cytoskeletal CUC43_23075 PF07690 Major Facilitator Superfamily CUC43_23115 PF07552 Spore Coat Protein X and V domain CUC43_23120 PF02645 Uncharacterised protein, DegV family COG1307 CUC43_23130 PF08439 Oligopeptidase F CUC43_23130 PF01432 Peptidase family M3 CUC43_23135 PF03808 Glycosyl transferase WecB/TagA/CpsF family CUC43_23165 PF00486 Transcriptional regulatory protein, C terminal CUC43_23165 PF00072 Response regulator receiver domain CUC43_23170 PF00989 PAS fold CUC43_23170 PF00512 His Kinase A (phospho-acceptor) domain CUC43_23170 PF16736 Single Cache-like CUC43_23170 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_23175 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain CUC43_23175 PF02129 X-Pro dipeptidyl-peptidase (S15 family) CUC43_23200 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region CUC43_23210 PF01965 DJ-1/PfpI family CUC43_23225 PF13378 Enolase C-terminal domain-like CUC43_23225 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CUC43_23230 PF00877 NlpC/P60 family CUC43_23230 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain CUC43_23235 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CUC43_23255 PF04914 DltD protein CUC43_23270 PF09335 SNARE associated Golgi protein CUC43_23290 PF08876 Domain of unknown function (DUF1836) CUC43_23305 PF04324 BFD-like [2Fe-2S] binding domain CUC43_23305 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC43_23315 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC43_23315 PF04324 BFD-like [2Fe-2S] binding domain CUC43_23320 PF13426 PAS domain CUC43_23320 PF02954 Bacterial regulatory protein, Fis family CUC43_23320 PF00158 Sigma-54 interaction domain CUC43_23325 PF01266 FAD dependent oxidoreductase CUC43_23330 PF05544 Proline racemase CUC43_23335 PF05544 Proline racemase CUC43_23340 PF00701 Dihydrodipicolinate synthetase family CUC43_23345 PF00171 Aldehyde dehydrogenase family CUC43_23350 PF01235 Sodium:alanine symporter family CUC43_23355 PF02627 Carboxymuconolactone decarboxylase family CUC43_23370 PF18416 N-acetylglucosamine binding protein domain 2 CUC43_23370 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading CUC43_23375 PF02833 DHHA2 domain CUC43_23375 PF01368 DHH family CUC43_23425 PF09382 RQC domain CUC43_23425 PF00270 DEAD/DEAH box helicase CUC43_23425 PF16124 RecQ zinc-binding CUC43_23425 PF00570 HRDC domain CUC43_23425 PF00271 Helicase conserved C-terminal domain CUC43_23430 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like CUC43_23445 PF13538 UvrD-like helicase C-terminal domain CUC43_23490 PF00753 Metallo-beta-lactamase superfamily CUC43_23490 PF13567 Domain of unknown function (DUF4131) CUC43_23490 PF03772 Competence protein CUC43_23500 PF04237 YjbR CUC43_23505 PF08241 Methyltransferase domain CUC43_23510 PF10990 Protein of unknown function (DUF2809) CUC43_23520 PF03781 Sulfatase-modifying factor enzyme 1 CUC43_23525 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase CUC43_23530 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading CUC43_23530 PF18416 N-acetylglucosamine binding protein domain 2 CUC43_23535 PF13673 Acetyltransferase (GNAT) domain CUC43_23540 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) CUC43_23555 PF00574 Clp protease CUC43_23560 PF04069 Substrate binding domain of ABC-type glycine betaine transport system CUC43_23565 PF00005 ABC transporter CUC43_23565 PF00571 CBS domain CUC43_23570 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_23610 PF00485 Phosphoribulokinase / Uridine kinase family CUC43_23615 PF04229 GrpB protein CUC43_23615 PF13673 Acetyltransferase (GNAT) domain CUC43_23620 PF00106 short chain dehydrogenase CUC43_23630 PF00676 Dehydrogenase E1 component CUC43_23635 PF02780 Transketolase, C-terminal domain CUC43_23635 PF02779 Transketolase, pyrimidine binding domain CUC43_23640 PF02817 e3 binding domain CUC43_23640 PF00364 Biotin-requiring enzyme CUC43_23640 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) CUC43_23645 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CUC43_23645 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC43_23660 PF02082 Transcriptional regulator CUC43_23665 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain CUC43_23665 PF00403 Heavy-metal-associated domain CUC43_23665 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC43_23675 PF08220 DeoR-like helix-turn-helix domain CUC43_23675 PF00455 DeoR C terminal sensor domain CUC43_23680 PF13302 Acetyltransferase (GNAT) domain CUC43_23695 PF01590 GAF domain CUC43_23695 PF02954 Bacterial regulatory protein, Fis family CUC43_23695 PF00158 Sigma-54 interaction domain CUC43_23710 PF01546 Peptidase family M20/M25/M40 CUC43_23710 PF07687 Peptidase dimerisation domain CUC43_23720 PF13378 Enolase C-terminal domain-like CUC43_23720 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain CUC43_23730 PF13344 Haloacid dehalogenase-like hydrolase CUC43_23730 PF00293 NUDIX domain CUC43_23735 PF08359 YsiA-like protein, C-terminal region CUC43_23735 PF00440 Bacterial regulatory proteins, tetR family CUC43_23740 PF00266 Aminotransferase class-V CUC43_23745 PF04199 Putative cyclase CUC43_23750 PF03301 Tryptophan 2,3-dioxygenase CUC43_23770 PF07486 Cell Wall Hydrolase CUC43_23770 PF01471 Putative peptidoglycan binding domain CUC43_23775 PF03413 Peptidase propeptide and YPEB domain CUC43_23775 PF14620 YpeB sporulation CUC43_23780 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) CUC43_23795 PF06081 Aromatic acid exporter family member 1 CUC43_23820 PF00561 alpha/beta hydrolase fold CUC43_23825 PF00107 Zinc-binding dehydrogenase CUC43_23825 PF08240 Alcohol dehydrogenase GroES-like domain CUC43_23835 PF00892 EamA-like transporter family CUC43_23840 PF00308 Bacterial dnaA protein CUC43_23840 PF11638 DnaA N-terminal domain CUC43_23840 PF08299 Bacterial dnaA protein helix-turn-helix CUC43_23845 PF00344 SecY translocase CUC43_23850 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CUC43_23875 PF03413 Peptidase propeptide and YPEB domain CUC43_23875 PF02868 Thermolysin metallopeptidase, alpha-helical domain CUC43_23875 PF01447 Thermolysin metallopeptidase, catalytic domain CUC43_23875 PF07504 Fungalysin/Thermolysin Propeptide Motif CUC43_23880 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) CUC43_23880 PF00128 Alpha amylase, catalytic domain CUC43_23880 PF03714 Bacterial pullanase-associated domain CUC43_23885 PF01569 PAP2 superfamily CUC43_23930 PF01266 FAD dependent oxidoreductase CUC43_23965 PF01541 GIY-YIG catalytic domain CUC43_23975 PF02673 Bacitracin resistance protein BacA CUC43_23990 PF12867 DinB superfamily CUC43_24000 PF08000 Bacterial PH domain CUC43_24005 PF01734 Patatin-like phospholipase CUC43_24025 PF09234 Domain of unknown function (DUF1963) CUC43_24055 PF02767 DNA polymerase III beta subunit, central domain CUC43_24055 PF02768 DNA polymerase III beta subunit, C-terminal domain CUC43_24055 PF00712 DNA polymerase III beta subunit, N-terminal domain CUC43_24060 PF13344 Haloacid dehalogenase-like hydrolase CUC43_24060 PF00293 NUDIX domain CUC43_24075 PF07690 Major Facilitator Superfamily CUC43_24095 PF00293 NUDIX domain CUC43_24095 PF13344 Haloacid dehalogenase-like hydrolase CUC43_24100 PF01784 NIF3 (NGG1p interacting factor 3) CUC43_24110 PF00892 EamA-like transporter family CUC43_24115 PF00155 Aminotransferase class I and II CUC43_24115 PF00392 Bacterial regulatory proteins, gntR family CUC43_24130 PF03009 Glycerophosphoryl diester phosphodiesterase family CUC43_24160 PF02371 Transposase IS116/IS110/IS902 family CUC43_24160 PF01548 Transposase CUC43_24205 PF01569 PAP2 superfamily CUC43_24210 PF00107 Zinc-binding dehydrogenase CUC43_24210 PF08240 Alcohol dehydrogenase GroES-like domain CUC43_24215 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_24215 PF00512 His Kinase A (phospho-acceptor) domain CUC43_24215 PF18719 ArlS sensor domain CUC43_24220 PF00072 Response regulator receiver domain CUC43_24220 PF00486 Transcriptional regulatory protein, C terminal CUC43_24240 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_24240 PF00512 His Kinase A (phospho-acceptor) domain CUC43_24255 PF00005 ABC transporter CUC43_24255 PF12558 ATP-binding cassette cobalt transporter CUC43_24275 PF01569 PAP2 superfamily CUC43_24305 PF01040 UbiA prenyltransferase family CUC43_24355 PF00355 Rieske [2Fe-2S] domain CUC43_24355 PF01266 FAD dependent oxidoreductase CUC43_24390 PF00144 Beta-lactamase CUC43_24400 PF16916 Dimerisation domain of Zinc Transporter CUC43_24400 PF01545 Cation efflux family CUC43_24425 PF01548 Transposase CUC43_24425 PF02371 Transposase IS116/IS110/IS902 family CUC43_24440 PF01177 Asp/Glu/Hydantoin racemase CUC43_24445 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase CUC43_24455 PF00989 PAS fold CUC43_24455 PF00512 His Kinase A (phospho-acceptor) domain CUC43_24455 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_24455 PF13426 PAS domain CUC43_24455 PF13188 PAS domain CUC43_24475 PF00067 Cytochrome P450 CUC43_24485 PF07561 Domain of Unknown Function (DUF1540) CUC43_24490 PF00132 Bacterial transferase hexapeptide (six repeats) CUC43_24500 PF00067 Cytochrome P450 CUC43_24560 PF03070 TENA/THI-4/PQQC family CUC43_24565 PF01820 D-ala D-ala ligase N-terminus CUC43_24565 PF07478 D-ala D-ala ligase C-terminus CUC43_24570 PF00392 Bacterial regulatory proteins, gntR family CUC43_24570 PF00155 Aminotransferase class I and II CUC43_24575 PF01842 ACT domain CUC43_24575 PF03447 Homoserine dehydrogenase, NAD binding domain CUC43_24575 PF00742 Homoserine dehydrogenase CUC43_24595 PF02687 FtsX-like permease family CUC43_24600 PF00005 ABC transporter CUC43_24630 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_24635 PF00486 Transcriptional regulatory protein, C terminal CUC43_24635 PF00072 Response regulator receiver domain CUC43_24640 PF03069 Acetamidase/Formamidase family CUC43_24645 PF07486 Cell Wall Hydrolase CUC43_24650 PF01921 tRNA synthetases class I (K) CUC43_24660 PF08450 SMP-30/Gluconolactonase/LRE-like region CUC43_24670 PF08245 Mur ligase middle domain CUC43_24670 PF02875 Mur ligase family, glutamate ligase domain CUC43_24670 PF01225 Mur ligase family, catalytic domain CUC43_24675 PF08241 Methyltransferase domain CUC43_24680 PF04239 Protein of unknown function (DUF421) CUC43_24705 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal CUC43_24705 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal CUC43_24715 PF00155 Aminotransferase class I and II CUC43_24715 PF00392 Bacterial regulatory proteins, gntR family CUC43_24730 PF12833 Helix-turn-helix domain CUC43_24735 PF01636 Phosphotransferase enzyme family CUC43_24745 PF01609 Transposase DDE domain CUC43_24755 PF01048 Phosphorylase superfamily CUC43_24770 PF13847 Methyltransferase domain CUC43_24785 PF07690 Major Facilitator Superfamily CUC43_24790 PF09278 MerR, DNA binding CUC43_24790 PF00376 MerR family regulatory protein CUC43_24795 PF00144 Beta-lactamase CUC43_24810 PF17760 UvrA interaction domain CUC43_24810 PF17755 UvrA DNA-binding domain CUC43_24810 PF00005 ABC transporter CUC43_24825 PF07504 Fungalysin/Thermolysin Propeptide Motif CUC43_24825 PF03413 Peptidase propeptide and YPEB domain CUC43_24825 PF01447 Thermolysin metallopeptidase, catalytic domain CUC43_24825 PF02868 Thermolysin metallopeptidase, alpha-helical domain CUC43_24845 PF01048 Phosphorylase superfamily CUC43_24860 PF01966 HD domain CUC43_24865 PF00072 Response regulator receiver domain CUC43_24865 PF00486 Transcriptional regulatory protein, C terminal CUC43_24870 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_24870 PF00512 His Kinase A (phospho-acceptor) domain CUC43_24875 PF00768 D-alanyl-D-alanine carboxypeptidase CUC43_24875 PF07943 Penicillin-binding protein 5, C-terminal domain CUC43_24880 PF05163 DinB family CUC43_24885 PF12146 Serine aminopeptidase, S33 CUC43_24890 PF00485 Phosphoribulokinase / Uridine kinase family CUC43_24905 PF00501 AMP-binding enzyme CUC43_24905 PF13193 AMP-binding enzyme C-terminal domain CUC43_24905 PF16177 Acetyl-coenzyme A synthetase N-terminus CUC43_24910 PF01039 Carboxyl transferase domain CUC43_24915 PF00378 Enoyl-CoA hydratase/isomerase CUC43_24920 PF00682 HMGL-like CUC43_24925 PF00364 Biotin-requiring enzyme CUC43_24930 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain CUC43_24930 PF00289 Biotin carboxylase, N-terminal domain CUC43_24930 PF02785 Biotin carboxylase C-terminal domain CUC43_24935 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CUC43_24935 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CUC43_24935 PF02770 Acyl-CoA dehydrogenase, middle domain CUC43_24955 PF08359 YsiA-like protein, C-terminal region CUC43_24955 PF00440 Bacterial regulatory proteins, tetR family CUC43_24965 PF00005 ABC transporter CUC43_24980 PF00753 Metallo-beta-lactamase superfamily CUC43_25000 PF00483 Nucleotidyl transferase CUC43_25005 PF03407 Nucleotide-diphospho-sugar transferase CUC43_25010 PF16363 GDP-mannose 4,6 dehydratase CUC43_25015 PF16363 GDP-mannose 4,6 dehydratase CUC43_25020 PF18801 response regulator aspartate phosphatase H, N terminal CUC43_25055 PF13302 Acetyltransferase (GNAT) domain CUC43_25060 PF00563 EAL domain CUC43_25060 PF03707 Bacterial signalling protein N terminal repeat CUC43_25060 PF00990 Diguanylate cyclase, GGDEF domain CUC43_25095 PF00753 Metallo-beta-lactamase superfamily CUC43_25095 PF16123 Hydroxyacylglutathione hydrolase C-terminus CUC43_25115 PF01757 Acyltransferase family CUC43_25130 PF07486 Cell Wall Hydrolase CUC43_25145 PF04962 KduI/IolB family CUC43_25150 PF01116 Fructose-bisphosphate aldolase class-II CUC43_25155 PF01261 Xylose isomerase-like TIM barrel CUC43_25160 PF00205 Thiamine pyrophosphate enzyme, central domain CUC43_25160 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CUC43_25160 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CUC43_25165 PF00171 Aldehyde dehydrogenase family CUC43_25170 PF00294 pfkB family carbohydrate kinase CUC43_25175 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CUC43_25175 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CUC43_25185 PF07690 Major Facilitator Superfamily CUC43_25190 PF00356 Bacterial regulatory proteins, lacI family CUC43_25195 PF01569 PAP2 superfamily CUC43_25220 PF04542 Sigma-70 region 2 CUC43_25220 PF08281 Sigma-70, region 4 CUC43_25245 PF00768 D-alanyl-D-alanine carboxypeptidase CUC43_25245 PF07943 Penicillin-binding protein 5, C-terminal domain CUC43_25250 PF00132 Bacterial transferase hexapeptide (six repeats) CUC43_25265 PF07687 Peptidase dimerisation domain CUC43_25265 PF01546 Peptidase family M20/M25/M40 CUC43_25280 PF14171 Toxin SpoIISA, type II toxin-antitoxin system CUC43_25290 PF00300 Histidine phosphatase superfamily (branch 1) CUC43_25295 PF01047 MarR family CUC43_25300 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CUC43_25300 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CUC43_25300 PF00205 Thiamine pyrophosphate enzyme, central domain CUC43_25310 PF03848 Tellurite resistance protein TehB CUC43_25310 PF09313 Domain of unknown function (DUF1971) CUC43_25315 PF00005 ABC transporter CUC43_25315 PF02687 FtsX-like permease family CUC43_25315 PF12704 MacB-like periplasmic core domain CUC43_25330 PF17932 Tetracyclin repressor-like, C-terminal domain CUC43_25330 PF00440 Bacterial regulatory proteins, tetR family CUC43_25345 PF00270 DEAD/DEAH box helicase CUC43_25345 PF00271 Helicase conserved C-terminal domain CUC43_25360 PF00753 Metallo-beta-lactamase superfamily CUC43_25360 PF16123 Hydroxyacylglutathione hydrolase C-terminus CUC43_25380 PF07690 Major Facilitator Superfamily CUC43_25385 PF01047 MarR family CUC43_25390 PF00291 Pyridoxal-phosphate dependent enzyme CUC43_25395 PF00266 Aminotransferase class-V CUC43_25400 PF02660 Glycerol-3-phosphate acyltransferase CUC43_25405 PF01869 BadF/BadG/BcrA/BcrD ATPase family CUC43_25410 PF03702 Anhydro-N-acetylmuramic acid kinase CUC43_25420 PF02378 Phosphotransferase system, EIIC CUC43_25430 PF02638 Glycosyl hydrolase-like 10 CUC43_25460 PF04542 Sigma-70 region 2 CUC43_25460 PF08281 Sigma-70, region 4 CUC43_25460 PF12680 SnoaL-like domain CUC43_25465 PF00890 FAD binding domain CUC43_25475 PF13291 ACT domain CUC43_25475 PF04607 Region found in RelA / SpoT proteins CUC43_25475 PF02824 TGS domain CUC43_25505 PF07883 Cupin domain CUC43_25505 PF01381 Helix-turn-helix CUC43_25510 PF01810 LysE type translocator CUC43_25525 PF00005 ABC transporter CUC43_25525 PF00664 ABC transporter transmembrane region CUC43_25530 PF00005 ABC transporter CUC43_25530 PF00664 ABC transporter transmembrane region CUC43_25565 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC43_25565 PF03466 LysR substrate binding domain CUC43_25575 PF02371 Transposase IS116/IS110/IS902 family CUC43_25575 PF01548 Transposase CUC43_25660 PF01520 N-acetylmuramoyl-L-alanine amidase CUC43_25660 PF08239 Bacterial SH3 domain CUC43_25665 PF04688 SPP1 phage holin CUC43_25790 PF02796 Helix-turn-helix domain of resolvase CUC43_25790 PF00239 Resolvase, N terminal domain CUC43_25830 PF18277 AbrB C-terminal domain CUC43_25830 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CUC43_25880 PF01548 Transposase CUC43_25880 PF02371 Transposase IS116/IS110/IS902 family CUC43_25920 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain CUC43_25920 PF01367 5'-3' exonuclease, C-terminal SAM fold CUC43_25920 PF00476 DNA polymerase family A CUC43_25920 PF01612 3'-5' exonuclease CUC43_26030 PF00313 'Cold-shock' DNA-binding domain CUC43_26040 PF13302 Acetyltransferase (GNAT) domain CUC43_26080 PF00583 Acetyltransferase (GNAT) family CUC43_26095 PF00302 Chloramphenicol acetyltransferase CUC43_26105 PF03176 MMPL family CUC43_26115 PF00753 Metallo-beta-lactamase superfamily CUC43_26125 PF01047 MarR family CUC43_26170 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain CUC43_26170 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CUC43_26170 PF00205 Thiamine pyrophosphate enzyme, central domain CUC43_26185 PF07690 Major Facilitator Superfamily CUC43_26190 PF12146 Serine aminopeptidase, S33 CUC43_26205 PF00005 ABC transporter CUC43_26210 PF11188 Protein of unknown function (DUF2975) CUC43_26215 PF02824 TGS domain CUC43_26215 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CUC43_26215 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CUC43_26215 PF03129 Anticodon binding domain CUC43_26220 PF01479 S4 domain CUC43_26220 PF00849 RNA pseudouridylate synthase CUC43_26225 PF16291 Domain of unknown function (DUF4937 CUC43_26245 PF01235 Sodium:alanine symporter family CUC43_26250 PF00082 Subtilase family CUC43_26255 PF05163 DinB family CUC43_26265 PF00216 Bacterial DNA-binding protein CUC43_26280 PF07690 Major Facilitator Superfamily CUC43_26285 PF03621 MbtH-like protein CUC43_26290 PF00668 Condensation domain CUC43_26290 PF00501 AMP-binding enzyme CUC43_26290 PF00550 Phosphopantetheine attachment site CUC43_26290 PF00975 Thioesterase domain CUC43_26290 PF13193 AMP-binding enzyme C-terminal domain CUC43_26295 PF00857 Isochorismatase family CUC43_26295 PF00550 Phosphopantetheine attachment site CUC43_26300 PF00501 AMP-binding enzyme CUC43_26300 PF13193 AMP-binding enzyme C-terminal domain CUC43_26305 PF00425 chorismate binding enzyme CUC43_26310 PF00106 short chain dehydrogenase CUC43_26315 PF07690 Major Facilitator Superfamily CUC43_26330 PF01022 Bacterial regulatory protein, arsR family CUC43_26340 PF13476 AAA domain CUC43_26345 PF00149 Calcineurin-like phosphoesterase CUC43_26345 PF12320 Type 5 capsule protein repressor C-terminal domain CUC43_26350 PF10763 Protein of unknown function (DUF2584) CUC43_26360 PF00378 Enoyl-CoA hydratase/isomerase CUC43_26365 PF01810 LysE type translocator CUC43_26370 PF00171 Aldehyde dehydrogenase family CUC43_26375 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase CUC43_26375 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CUC43_26380 PF02770 Acyl-CoA dehydrogenase, middle domain CUC43_26380 PF02771 Acyl-CoA dehydrogenase, N-terminal domain CUC43_26380 PF00441 Acyl-CoA dehydrogenase, C-terminal domain CUC43_26390 PF03972 MmgE/PrpD family CUC43_26395 PF00285 Citrate synthase, C-terminal domain CUC43_26400 PF01521 Iron-sulphur cluster biosynthesis CUC43_26405 PF07690 Major Facilitator Superfamily CUC43_26415 PF00912 Transglycosylase CUC43_26415 PF00905 Penicillin binding protein transpeptidase domain CUC43_26450 PF10676 Spore germination protein gerPA/gerPF CUC43_26505 PF04542 Sigma-70 region 2 CUC43_26505 PF08281 Sigma-70, region 4 CUC43_26540 PF00085 Thioredoxin CUC43_26545 PF16916 Dimerisation domain of Zinc Transporter CUC43_26545 PF01545 Cation efflux family CUC43_26550 PF01569 PAP2 superfamily CUC43_26560 PF08239 Bacterial SH3 domain CUC43_26560 PF00069 Protein kinase domain CUC43_26570 PF14162 YozD-like protein CUC43_26585 PF06855 YozE SAM-like fold CUC43_26590 PF14122 YokU-like protein, putative antitoxin CUC43_26595 PF12544 Lysine-2,3-aminomutase CUC43_26600 PF00158 Sigma-54 interaction domain CUC43_26600 PF02954 Bacterial regulatory protein, Fis family CUC43_26600 PF13426 PAS domain CUC43_26605 PF00583 Acetyltransferase (GNAT) family CUC43_26610 PF07687 Peptidase dimerisation domain CUC43_26610 PF01546 Peptidase family M20/M25/M40 CUC43_26615 PF01144 Coenzyme A transferase CUC43_26620 PF01144 Coenzyme A transferase CUC43_26625 PF00202 Aminotransferase class-III CUC43_26640 PF09385 Histidine kinase N terminal CUC43_26645 PF07997 Protein of unknown function (DUF1694) CUC43_26650 PF00171 Aldehyde dehydrogenase family CUC43_26655 PF01595 Cyclin M transmembrane N-terminal domain CUC43_26655 PF03471 Transporter associated domain CUC43_26655 PF00571 CBS domain CUC43_26685 PF13520 Amino acid permease CUC43_26690 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_26695 PF00571 CBS domain CUC43_26695 PF00005 ABC transporter CUC43_26710 PF03358 NADPH-dependent FMN reductase CUC43_26725 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain CUC43_26725 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase CUC43_26735 PF00144 Beta-lactamase CUC43_26750 PF08240 Alcohol dehydrogenase GroES-like domain CUC43_26750 PF00107 Zinc-binding dehydrogenase CUC43_26755 PF01380 SIS domain CUC43_26755 PF01418 Helix-turn-helix domain, rpiR family CUC43_26760 PF01418 Helix-turn-helix domain, rpiR family CUC43_26760 PF01380 SIS domain CUC43_26765 PF00196 Bacterial regulatory proteins, luxR family CUC43_26765 PF00072 Response regulator receiver domain CUC43_26770 PF07730 Histidine kinase CUC43_26770 PF13185 GAF domain CUC43_26775 PF00924 Mechanosensitive ion channel CUC43_26780 PF00011 Hsp20/alpha crystallin family CUC43_26785 PF00857 Isochorismatase family CUC43_26800 PF00881 Nitroreductase family CUC43_26805 PF01063 Amino-transferase class IV CUC43_26810 PF01497 Periplasmic binding protein CUC43_26825 PF00733 Asparagine synthase CUC43_26825 PF13537 Glutamine amidotransferase domain CUC43_26830 PF00011 Hsp20/alpha crystallin family CUC43_26835 PF02630 SCO1/SenC CUC43_26845 PF02645 Uncharacterised protein, DegV family COG1307 CUC43_26860 PF00902 Sec-independent protein translocase protein (TatC) CUC43_26865 PF02416 mttA/Hcf106 family CUC43_26870 PF03006 Haemolysin-III related CUC43_26875 PF01553 Acyltransferase CUC43_26880 PF02525 Flavodoxin-like fold CUC43_26885 PF00905 Penicillin binding protein transpeptidase domain CUC43_26885 PF03717 Penicillin-binding Protein dimerisation domain CUC43_26885 PF05223 NTF2-like N-terminal transpeptidase domain CUC43_26890 PF00186 Dihydrofolate reductase CUC43_26895 PF00303 Thymidylate synthase CUC43_26925 PF13419 Haloacid dehalogenase-like hydrolase CUC43_26930 PF14005 YpjP-like protein CUC43_26935 PF05975 Bacterial ABC transporter protein EcsB CUC43_26940 PF00005 ABC transporter CUC43_26950 PF08645 Polynucleotide kinase 3 phosphatase CUC43_26955 PF00583 Acetyltransferase (GNAT) family CUC43_26960 PF01980 tRNA-methyltransferase O CUC43_27000 PF13419 Haloacid dehalogenase-like hydrolase CUC43_27005 PF10997 Alternate to MurJ CUC43_27020 PF00209 Sodium:neurotransmitter symporter family CUC43_27145 PF01580 FtsK/SpoIIIE family CUC43_27145 PF12538 DNA transporter CUC43_27165 PF01336 OB-fold nucleic acid binding domain CUC43_27165 PF00152 tRNA synthetases class II (D, K and N) CUC43_27210 PF08264 Anticodon-binding domain of tRNA CUC43_27210 PF00133 tRNA synthetases class I (I, L, M and V) CUC43_27225 PF00750 tRNA synthetases class I (R) CUC43_27225 PF05746 DALR anticodon binding domain CUC43_27225 PF03485 Arginyl tRNA synthetase N terminal domain CUC43_27230 PF04445 Putative SAM-dependent methyltransferase CUC43_27235 PF06491 Disulphide isomerase CUC43_27245 PF13769 Virulence factor CUC43_27245 PF08712 Scaffold protein Nfu/NifU N terminal CUC43_27255 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CUC43_27255 PF01348 Type II intron maturase CUC43_27270 PF12848 ABC transporter CUC43_27270 PF16326 ABC transporter C-terminal domain CUC43_27270 PF00005 ABC transporter CUC43_27275 PF01966 HD domain CUC43_27305 PF03796 DnaB-like helicase C terminal domain CUC43_27305 PF00772 DnaB-like helicase N terminal domain CUC43_27315 PF04232 Stage V sporulation protein S (SpoVS) CUC43_27345 PF04405 Domain of Unknown function (DUF542) CUC43_27345 PF01814 Hemerythrin HHE cation binding domain CUC43_27350 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain CUC43_27350 PF18267 Rubredoxin NAD+ reductase C-terminal domain CUC43_27350 PF04324 BFD-like [2Fe-2S] binding domain CUC43_27350 PF01077 Nitrite and sulphite reductase 4Fe-4S domain CUC43_27350 PF07992 Pyridine nucleotide-disulphide oxidoreductase CUC43_27355 PF00355 Rieske [2Fe-2S] domain CUC43_27360 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases CUC43_27365 PF01903 CbiX CUC43_27395 PF07690 Major Facilitator Superfamily CUC43_27405 PF02391 MoaE protein CUC43_27410 PF03454 MoeA C-terminal region (domain IV) CUC43_27410 PF00994 Probable molybdopterin binding domain CUC43_27410 PF03453 MoeA N-terminal region (domain I and II) CUC43_27415 PF00899 ThiF family CUC43_27420 PF04055 Radical SAM superfamily CUC43_27420 PF06463 Molybdenum Cofactor Synthesis C CUC43_27425 PF00027 Cyclic nucleotide-binding domain CUC43_27425 PF00325 Bacterial regulatory proteins, crp family CUC43_27430 PF02665 Nitrate reductase gamma subunit CUC43_27435 PF02613 Nitrate reductase delta subunit CUC43_27440 PF14711 Respiratory nitrate reductase beta C-terminal CUC43_27440 PF13247 4Fe-4S dicluster domain CUC43_27445 PF14710 Respiratory nitrate reductase alpha N-terminal CUC43_27445 PF01568 Molydopterin dinucleotide binding domain CUC43_27445 PF00384 Molybdopterin oxidoreductase CUC43_27450 PF07726 ATPase family associated with various cellular activities (AAA) CUC43_27450 PF17863 AAA lid domain CUC43_27455 PF01882 Protein of unknown function DUF58 CUC43_27460 PF13559 Domain of unknown function (DUF4129) CUC43_27460 PF01841 Transglutaminase-like superfamily CUC43_27460 PF11992 Domain of unknown function (DUF3488) CUC43_27465 PF00255 Glutathione peroxidase CUC43_27475 PF01613 Flavin reductase like domain CUC43_27475 PF00258 Flavodoxin CUC43_27500 PF08281 Sigma-70, region 4 CUC43_27500 PF04542 Sigma-70 region 2 CUC43_27505 PF08240 Alcohol dehydrogenase GroES-like domain CUC43_27505 PF00107 Zinc-binding dehydrogenase CUC43_27515 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CUC43_27520 PF00270 DEAD/DEAH box helicase CUC43_27520 PF00271 Helicase conserved C-terminal domain CUC43_27530 PF01268 Formate--tetrahydrofolate ligase CUC43_27535 PF01209 ubiE/COQ5 methyltransferase family CUC43_27560 PF09579 Sporulation protein YtfJ (Spore_YtfJ) CUC43_27610 PF00583 Acetyltransferase (GNAT) family CUC43_27640 PF00155 Aminotransferase class I and II CUC43_27640 PF00392 Bacterial regulatory proteins, gntR family CUC43_27645 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CUC43_27645 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CUC43_27650 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase CUC43_27670 PF01168 Alanine racemase, N-terminal domain CUC43_27670 PF00842 Alanine racemase, C-terminal domain CUC43_27685 PF00300 Histidine phosphatase superfamily (branch 1) CUC43_27700 PF00682 HMGL-like CUC43_27700 PF07836 DmpG-like communication domain CUC43_27705 PF01118 Semialdehyde dehydrogenase, NAD binding domain CUC43_27705 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation CUC43_27710 PF01557 Fumarylacetoacetate (FAA) hydrolase family CUC43_27715 PF00171 Aldehyde dehydrogenase family CUC43_27720 PF01042 Endoribonuclease L-PSP CUC43_27730 PF06052 3-hydroxyanthranilic acid dioxygenase CUC43_27735 PF06574 FAD synthetase CUC43_27745 PF11794 4-hydroxyphenylacetate 3-hydroxylase N terminal CUC43_27745 PF03241 4-hydroxyphenylacetate 3-hydroxylase C terminal CUC43_27750 PF01145 SPFH domain / Band 7 family CUC43_27760 PF07690 Major Facilitator Superfamily CUC43_27765 PF01425 Amidase CUC43_27775 PF02557 D-alanyl-D-alanine carboxypeptidase CUC43_27785 PF07454 Stage II sporulation protein P (SpoIIP) CUC43_27805 PF01588 Putative tRNA binding domain CUC43_27810 PF05525 Branched-chain amino acid transport protein CUC43_27825 PF01595 Cyclin M transmembrane N-terminal domain CUC43_27825 PF00571 CBS domain CUC43_27825 PF03471 Transporter associated domain CUC43_27830 PF04306 Protein of unknown function (DUF456) CUC43_27835 PF13460 NAD(P)H-binding CUC43_27850 PF13396 Phospholipase_D-nuclease N-terminal CUC43_27850 PF13091 PLD-like domain CUC43_27860 PF03061 Thioesterase superfamily CUC43_27865 PF09323 Domain of unknown function (DUF1980) CUC43_27870 PF03773 Predicted permease CUC43_27880 PF14667 Polysaccharide biosynthesis C-terminal domain CUC43_27880 PF01943 Polysaccharide biosynthesis protein CUC43_27885 PF09335 SNARE associated Golgi protein CUC43_27890 PF00293 NUDIX domain CUC43_27895 PF08757 CotH kinase protein CUC43_27915 PF00300 Histidine phosphatase superfamily (branch 1) CUC43_27925 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CUC43_27930 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CUC43_27940 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CUC43_27940 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CUC43_27945 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CUC43_27950 PF13460 NAD(P)H-binding CUC43_27960 PF01297 Zinc-uptake complex component A periplasmic CUC43_27960 PF09223 ZinT (YodA) periplasmic lipocalin-like zinc-recruitment CUC43_27965 PF00583 Acetyltransferase (GNAT) family CUC43_27970 PF02492 CobW/HypB/UreG, nucleotide-binding domain CUC43_27970 PF07683 Cobalamin synthesis protein cobW C-terminal domain CUC43_27975 PF00248 Aldo/keto reductase family CUC43_27980 PF13302 Acetyltransferase (GNAT) domain CUC43_27985 PF01593 Flavin containing amine oxidoreductase CUC43_27995 PF00296 Luciferase-like monooxygenase CUC43_28010 PF00210 Ferritin-like domain CUC43_28035 PF00672 HAMP domain CUC43_28035 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain CUC43_28035 PF02743 Cache domain CUC43_28040 PF03193 RsgA GTPase CUC43_28060 PF07690 Major Facilitator Superfamily CUC43_28065 PF00248 Aldo/keto reductase family CUC43_28070 PF01022 Bacterial regulatory protein, arsR family CUC43_28075 PF01087 Galactose-1-phosphate uridyl transferase, N-terminal domain CUC43_28075 PF02744 Galactose-1-phosphate uridyl transferase, C-terminal domain CUC43_28080 PF00082 Subtilase family CUC43_28085 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CUC43_28085 PF18277 AbrB C-terminal domain CUC43_28090 PF02687 FtsX-like permease family CUC43_28095 PF02540 NAD synthase CUC43_28100 PF13344 Haloacid dehalogenase-like hydrolase CUC43_28100 PF00293 NUDIX domain CUC43_28125 PF01734 Patatin-like phospholipase CUC43_28135 PF00392 Bacterial regulatory proteins, gntR family CUC43_28135 PF00155 Aminotransferase class I and II CUC43_28140 PF01810 LysE type translocator CUC43_28145 PF07690 Major Facilitator Superfamily CUC43_28150 PF00269 Small, acid-soluble spore proteins, alpha/beta type CUC43_28155 PF01261 Xylose isomerase-like TIM barrel CUC43_28170 PF13193 AMP-binding enzyme C-terminal domain CUC43_28170 PF00501 AMP-binding enzyme CUC43_28175 PF06276 Ferric iron reductase FhuF-like transporter CUC43_28175 PF04183 IucA / IucC family CUC43_28180 PF06276 Ferric iron reductase FhuF-like transporter CUC43_28180 PF04183 IucA / IucC family CUC43_28185 PF00583 Acetyltransferase (GNAT) family CUC43_28190 PF02308 MgtC family CUC43_28200 PF01522 Polysaccharide deacetylase CUC43_28205 PF00989 PAS fold CUC43_28205 PF16736 Single Cache-like CUC43_28205 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_28205 PF00512 His Kinase A (phospho-acceptor) domain CUC43_28210 PF00072 Response regulator receiver domain CUC43_28210 PF00486 Transcriptional regulatory protein, C terminal CUC43_28220 PF03816 Cell envelope-related transcriptional attenuator domain CUC43_28235 PF08544 GHMP kinases C terminal CUC43_28235 PF00288 GHMP kinases N terminal domain CUC43_28240 PF00291 Pyridoxal-phosphate dependent enzyme CUC43_28245 PF00742 Homoserine dehydrogenase CUC43_28245 PF03447 Homoserine dehydrogenase, NAD binding domain CUC43_28245 PF01842 ACT domain CUC43_28260 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain CUC43_28260 PF01522 Polysaccharide deacetylase CUC43_28265 PF04439 Streptomycin adenylyltransferase CUC43_28275 PF00106 short chain dehydrogenase CUC43_28285 PF00989 PAS fold CUC43_28285 PF00512 His Kinase A (phospho-acceptor) domain CUC43_28285 PF16736 Single Cache-like CUC43_28285 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_28290 PF00072 Response regulator receiver domain CUC43_28290 PF00486 Transcriptional regulatory protein, C terminal CUC43_28295 PF00664 ABC transporter transmembrane region CUC43_28295 PF00005 ABC transporter CUC43_28305 PF00877 NlpC/P60 family CUC43_28305 PF01476 LysM domain CUC43_28320 PF00768 D-alanyl-D-alanine carboxypeptidase CUC43_28320 PF07943 Penicillin-binding protein 5, C-terminal domain CUC43_28325 PF17676 LD-carboxypeptidase C-terminal domain CUC43_28325 PF02016 LD-carboxypeptidase N-terminal domain CUC43_28340 PF00132 Bacterial transferase hexapeptide (six repeats) CUC43_28350 PF00535 Glycosyl transferase family 2 CUC43_28360 PF00664 ABC transporter transmembrane region CUC43_28360 PF00005 ABC transporter CUC43_28365 PF00664 ABC transporter transmembrane region CUC43_28365 PF00005 ABC transporter CUC43_28370 PF02322 Cytochrome bd terminal oxidase subunit II CUC43_28375 PF01654 Cytochrome bd terminal oxidase subunit I CUC43_28385 PF01047 MarR family CUC43_28395 PF14552 Tautomerase enzyme CUC43_28405 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC43_28405 PF03466 LysR substrate binding domain CUC43_28415 PF02653 Branched-chain amino acid transport system / permease component CUC43_28420 PF00005 ABC transporter CUC43_28425 PF12399 Branched-chain amino acid ATP-binding cassette transporter CUC43_28425 PF00005 ABC transporter CUC43_28435 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal CUC43_28435 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III CUC43_28440 PF01575 MaoC like domain CUC43_28445 PF13193 AMP-binding enzyme C-terminal domain CUC43_28445 PF00501 AMP-binding enzyme CUC43_28470 PF01022 Bacterial regulatory protein, arsR family CUC43_28475 PF01522 Polysaccharide deacetylase CUC43_28475 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain CUC43_28480 PF12791 Anti-sigma factor N-terminus CUC43_28485 PF04542 Sigma-70 region 2 CUC43_28490 PF00535 Glycosyl transferase family 2 CUC43_28490 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 CUC43_28495 PF01810 LysE type translocator CUC43_28515 PF05656 Protein of unknown function (DUF805) CUC43_28520 PF01061 ABC-2 type transporter CUC43_28525 PF13732 Domain of unknown function (DUF4162) CUC43_28525 PF00005 ABC transporter CUC43_28545 PF03063 Prismane/CO dehydrogenase family CUC43_28560 PF00753 Metallo-beta-lactamase superfamily CUC43_28590 PF00144 Beta-lactamase CUC43_28630 PF00753 Metallo-beta-lactamase superfamily CUC43_28635 PF00107 Zinc-binding dehydrogenase CUC43_28635 PF08240 Alcohol dehydrogenase GroES-like domain CUC43_28640 PF00324 Amino acid permease CUC43_28645 PF07690 Major Facilitator Superfamily CUC43_28670 PF02585 GlcNAc-PI de-N-acetylase CUC43_28675 PF08830 Protein of unknown function (DUF1806) CUC43_28680 PF03600 Citrate transporter CUC43_28695 PF01497 Periplasmic binding protein CUC43_28700 PF01032 FecCD transport family CUC43_28705 PF01032 FecCD transport family CUC43_28710 PF05675 Protein of unknown function (DUF817) CUC43_28735 PF10901 Protein of unknown function (DUF2690) CUC43_28745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC43_28745 PF03466 LysR substrate binding domain CUC43_28750 PF08240 Alcohol dehydrogenase GroES-like domain CUC43_28750 PF00107 Zinc-binding dehydrogenase CUC43_28765 PF01713 Smr domain CUC43_28765 PF00488 MutS domain V CUC43_28775 PF09154 Domain of unknown function (DUF1939) CUC43_28775 PF00128 Alpha amylase, catalytic domain CUC43_28780 PF00797 N-acetyltransferase CUC43_28785 PF08439 Oligopeptidase F CUC43_28785 PF01432 Peptidase family M3 CUC43_28790 PF06445 GyrI-like small molecule binding domain CUC43_28790 PF13411 MerR HTH family regulatory protein CUC43_28800 PF04371 Porphyromonas-type peptidyl-arginine deiminase CUC43_28805 PF00144 Beta-lactamase CUC43_28820 PF07690 Major Facilitator Superfamily CUC43_28825 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC43_28825 PF03466 LysR substrate binding domain CUC43_28835 PF03009 Glycerophosphoryl diester phosphodiesterase family CUC43_28885 PF01494 FAD binding domain CUC43_28890 PF01022 Bacterial regulatory protein, arsR family CUC43_28895 PF00107 Zinc-binding dehydrogenase CUC43_28895 PF08240 Alcohol dehydrogenase GroES-like domain CUC43_28900 PF02696 Uncharacterized ACR, YdiU/UPF0061 family CUC43_28905 PF18801 response regulator aspartate phosphatase H, N terminal CUC43_28915 PF04299 Putative FMN-binding domain CUC43_28920 PF04229 GrpB protein CUC43_28920 PF13673 Acetyltransferase (GNAT) domain CUC43_28930 PF01758 Sodium Bile acid symporter family CUC43_28935 PF02913 FAD linked oxidases, C-terminal domain CUC43_28935 PF01565 FAD binding domain CUC43_28945 PF00144 Beta-lactamase CUC43_28960 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit CUC43_28980 PF00440 Bacterial regulatory proteins, tetR family CUC43_28985 PF07968 Leukocidin/Hemolysin toxin family CUC43_28990 PF01520 N-acetylmuramoyl-L-alanine amidase CUC43_28990 PF00395 S-layer homology domain CUC43_28995 PF01022 Bacterial regulatory protein, arsR family CUC43_29010 PF00512 His Kinase A (phospho-acceptor) domain CUC43_29010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_29010 PF00989 PAS fold CUC43_29015 PF01752 Collagenase CUC43_29015 PF18496 Collagenase G catalytic helper subdomain CUC43_29015 PF08453 Peptidase family M9 N-terminal CUC43_29020 PF02308 MgtC family CUC43_29035 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CUC43_29040 PF00497 Bacterial extracellular solute-binding proteins, family 3 CUC43_29045 PF00005 ABC transporter CUC43_29065 PF04294 VanW like protein CUC43_29075 PF13037 Domain of unknown function (DUF3898) CUC43_29075 PF13039 Protein of unknown function (DUF3900) CUC43_29095 PF00313 'Cold-shock' DNA-binding domain CUC43_29105 PF00258 Flavodoxin CUC43_29115 PF00293 NUDIX domain CUC43_29125 PF00132 Bacterial transferase hexapeptide (six repeats) CUC43_29135 PF00106 short chain dehydrogenase CUC43_29145 PF14698 Argininosuccinate lyase C-terminal CUC43_29145 PF00206 Lyase CUC43_29155 PF01156 Inosine-uridine preferring nucleoside hydrolase CUC43_29160 PF00474 Sodium:solute symporter family CUC43_29170 PF00171 Aldehyde dehydrogenase family CUC43_29185 PF13249 Squalene-hopene cyclase N-terminal domain CUC43_29185 PF13243 Squalene-hopene cyclase C-terminal domain CUC43_29190 PF02681 Divergent PAP2 family CUC43_29195 PF00892 EamA-like transporter family CUC43_29200 PF06961 Protein of unknown function (DUF1294) CUC43_29215 PF10609 NUBPL iron-transfer P-loop NTPase CUC43_29225 PF02391 MoaE protein CUC43_29230 PF00994 Probable molybdopterin binding domain CUC43_29230 PF03454 MoeA C-terminal region (domain IV) CUC43_29230 PF03453 MoeA N-terminal region (domain I and II) CUC43_29235 PF00899 ThiF family CUC43_29240 PF01226 Formate/nitrite transporter CUC43_29250 PF04055 Radical SAM superfamily CUC43_29250 PF06463 Molybdenum Cofactor Synthesis C CUC43_29270 PF10057 Uncharacterized conserved protein (DUF2294) CUC43_29275 PF07849 Protein of unknown function (DUF1641) CUC43_29320 PF01520 N-acetylmuramoyl-L-alanine amidase CUC43_29320 PF08239 Bacterial SH3 domain CUC43_29325 PF04688 SPP1 phage holin CUC43_29405 PF00574 Clp protease CUC43_29415 PF03354 Phage Terminase CUC43_29450 PF17854 FtsK alpha domain CUC43_29450 PF09397 Ftsk gamma domain CUC43_29450 PF01580 FtsK/SpoIIIE family CUC43_29455 PF00589 Phage integrase family CUC43_29475 PF01548 Transposase CUC43_29475 PF02371 Transposase IS116/IS110/IS902 family CUC43_29515 PF01695 IstB-like ATP binding protein CUC43_29565 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region CUC43_29565 PF01568 Molydopterin dinucleotide binding domain CUC43_29565 PF00384 Molybdopterin oxidoreductase CUC43_29565 PF04879 Molybdopterin oxidoreductase Fe4S4 domain CUC43_29565 PF00037 4Fe-4S binding domain CUC43_29575 PF03323 Bacillus/Clostridium GerA spore germination protein CUC43_29620 PF08241 Methyltransferase domain CUC43_29625 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CUC43_29630 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CUC43_29635 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle CUC43_29645 PF03816 Cell envelope-related transcriptional attenuator domain CUC43_29655 PF08281 Sigma-70, region 4 CUC43_29655 PF04542 Sigma-70 region 2 CUC43_29675 PF13732 Domain of unknown function (DUF4162) CUC43_29675 PF00005 ABC transporter CUC43_29695 PF02894 Oxidoreductase family, C-terminal alpha/beta domain CUC43_29695 PF01408 Oxidoreductase family, NAD-binding Rossmann fold CUC43_29700 PF00521 DNA gyrase/topoisomerase IV, subunit A CUC43_29700 PF03989 DNA gyrase C-terminal domain, beta-propeller CUC43_29705 PF00986 DNA gyrase B subunit, carboxyl terminus CUC43_29705 PF01751 Toprim domain CUC43_29705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_29705 PF00204 DNA gyrase B CUC43_29715 PF13380 CoA binding domain CUC43_29720 PF13180 PDZ domain CUC43_29725 PF00486 Transcriptional regulatory protein, C terminal CUC43_29725 PF00072 Response regulator receiver domain CUC43_29730 PF04055 Radical SAM superfamily CUC43_29735 PF03477 ATP cone domain CUC43_29735 PF13597 Anaerobic ribonucleoside-triphosphate reductase CUC43_29740 PF02660 Glycerol-3-phosphate acyltransferase CUC43_29745 PF01521 Iron-sulphur cluster biosynthesis CUC43_29750 PF03061 Thioesterase superfamily CUC43_29755 PF00704 Glycosyl hydrolases family 18 CUC43_29755 PF01476 LysM domain CUC43_29760 PF08177 Small acid-soluble spore protein N family CUC43_29765 PF13040 Fur-regulated basic protein B CUC43_29770 PF11490 DNA polymerase III polC-type N-terminus II CUC43_29770 PF07733 Bacterial DNA polymerase III alpha NTPase domain CUC43_29770 PF14579 Helix-hairpin-helix motif CUC43_29770 PF01336 OB-fold nucleic acid binding domain CUC43_29770 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CUC43_29770 PF02811 PHP domain CUC43_29770 PF00929 Exonuclease CUC43_29775 PF00578 AhpC/TSA family CUC43_29785 PF03412 Peptidase C39 family CUC43_29785 PF00664 ABC transporter transmembrane region CUC43_29785 PF00005 ABC transporter CUC43_29790 PF00694 Aconitase C-terminal domain CUC43_29790 PF00330 Aconitase family (aconitate hydratase) CUC43_29800 PF01522 Polysaccharide deacetylase CUC43_29810 PF08179 Small acid-soluble spore protein P family CUC43_29820 PF07690 Major Facilitator Superfamily CUC43_29835 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CUC43_29835 PF02272 DHHA1 domain CUC43_29835 PF01411 tRNA synthetases class II (A) CUC43_29840 PF00293 NUDIX domain CUC43_29840 PF13344 Haloacid dehalogenase-like hydrolase CUC43_29850 PF00108 Thiolase, N-terminal domain CUC43_29850 PF02803 Thiolase, C-terminal domain CUC43_29855 PF00501 AMP-binding enzyme CUC43_29855 PF13193 AMP-binding enzyme C-terminal domain CUC43_29860 PF02632 BioY family CUC43_29865 PF13193 AMP-binding enzyme C-terminal domain CUC43_29865 PF00501 AMP-binding enzyme CUC43_29875 PF00005 ABC transporter CUC43_29880 PF01381 Helix-turn-helix CUC43_29905 PF05532 CsbD-like CUC43_29935 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 CUC43_29935 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) CUC43_29950 PF00512 His Kinase A (phospho-acceptor) domain CUC43_29950 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_29950 PF00989 PAS fold CUC43_29950 PF13188 PAS domain CUC43_29950 PF13426 PAS domain CUC43_29955 PF01738 Dienelactone hydrolase family CUC43_29960 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CUC43_29965 PF00474 Sodium:solute symporter family CUC43_29975 PF01645 Conserved region in glutamate synthase CUC43_29980 PF00724 NADH:flavin oxidoreductase / NADH oxidase family CUC43_30000 PF00491 Arginase family CUC43_30005 PF01979 Amidohydrolase family CUC43_30010 PF01175 Urocanase Rossmann-like domain CUC43_30010 PF17391 Urocanase N-terminal domain CUC43_30010 PF17392 Urocanase C-terminal domain CUC43_30015 PF00221 Aromatic amino acid lyase CUC43_30020 PF09021 HutP CUC43_30050 PF11084 Protein of unknown function (DUF2621) CUC43_30055 PF07301 Protein of unknown function (DUF1453) CUC43_30060 PF02683 Cytochrome C biogenesis protein transmembrane region CUC43_30085 PF00005 ABC transporter CUC43_30095 PF03466 LysR substrate binding domain CUC43_30095 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family CUC43_30100 PF03788 LrgA family CUC43_30105 PF04172 LrgB-like family CUC43_30110 PF13344 Haloacid dehalogenase-like hydrolase CUC43_30110 PF00293 NUDIX domain CUC43_30120 PF01925 Sulfite exporter TauE/SafE CUC43_30130 PF01471 Putative peptidoglycan binding domain CUC43_30130 PF01510 N-acetylmuramoyl-L-alanine amidase CUC43_30145 PF08239 Bacterial SH3 domain CUC43_30145 PF01183 Glycosyl hydrolases family 25 CUC43_30150 PF00664 ABC transporter transmembrane region CUC43_30150 PF00005 ABC transporter CUC43_30155 PF00005 ABC transporter CUC43_30155 PF00664 ABC transporter transmembrane region CUC43_30160 PF03672 Uncharacterised protein family (UPF0154) CUC43_30165 PF10747 Sporulation inhibitor of replication protein SirA CUC43_30170 PF02779 Transketolase, pyrimidine binding domain CUC43_30170 PF02780 Transketolase, C-terminal domain CUC43_30170 PF00456 Transketolase, thiamine diphosphate binding domain CUC43_30175 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_30180 PF00528 Binding-protein-dependent transport system inner membrane component CUC43_30185 PF00005 ABC transporter CUC43_30190 PF00497 Bacterial extracellular solute-binding proteins, family 3 CUC43_30195 PF02872 5'-nucleotidase, C-terminal domain CUC43_30195 PF00149 Calcineurin-like phosphoesterase CUC43_30200 PF05979 Bacterial protein of unknown function (DUF896) CUC43_30205 PF00239 Resolvase, N terminal domain CUC43_30210 PF01726 LexA DNA binding domain CUC43_30210 PF00717 Peptidase S24-like CUC43_30225 PF03551 Transcriptional regulator PadR-like family CUC43_30230 PF00005 ABC transporter CUC43_30230 PF00664 ABC transporter transmembrane region CUC43_30260 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family CUC43_30265 PF17836 PglD N-terminal domain CUC43_30265 PF00132 Bacterial transferase hexapeptide (six repeats) CUC43_30270 PF02397 Bacterial sugar transferase CUC43_30290 PF00534 Glycosyl transferases group 1 CUC43_30290 PF08323 Starch synthase catalytic domain CUC43_30300 PF13477 Glycosyl transferase 4-like CUC43_30300 PF00534 Glycosyl transferases group 1 CUC43_30305 PF01501 Glycosyl transferase family 8 CUC43_30305 PF00535 Glycosyl transferase family 2 CUC43_30315 PF01501 Glycosyl transferase family 8 CUC43_30330 PF00535 Glycosyl transferase family 2 CUC43_30330 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase CUC43_30335 PF13439 Glycosyltransferase Family 4 CUC43_30335 PF00534 Glycosyl transferases group 1 CUC43_30340 PF00534 Glycosyl transferases group 1 CUC43_30340 PF13439 Glycosyltransferase Family 4 CUC43_30345 PF02719 Polysaccharide biosynthesis protein CUC43_30350 PF13614 AAA domain CUC43_30355 PF13807 G-rich domain on putative tyrosine kinase CUC43_30355 PF02706 Chain length determinant protein CUC43_30360 PF00120 Glutamine synthetase, catalytic domain CUC43_30360 PF03951 Glutamine synthetase, beta-Grasp domain CUC43_30365 PF13411 MerR HTH family regulatory protein CUC43_30370 PF06838 Methionine gamma-lyase CUC43_30375 PF13167 GTP-binding GTPase N-terminal CUC43_30375 PF01926 50S ribosome-binding GTPase CUC43_30375 PF16360 GTP-binding GTPase Middle Region CUC43_30380 PF03458 UPF0126 domain CUC43_30385 PF00004 ATPase family associated with various cellular activities (AAA) CUC43_30385 PF17866 AAA lid domain CUC43_30400 PF17209 Hfq protein CUC43_30415 PF06725 3D domain CUC43_30415 PF01476 LysM domain CUC43_30425 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit CUC43_30425 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 CUC43_30430 PF00294 pfkB family carbohydrate kinase CUC43_30435 PF00455 DeoR C terminal sensor domain CUC43_30435 PF08220 DeoR-like helix-turn-helix domain CUC43_30440 PF00465 Iron-containing alcohol dehydrogenase CUC43_30445 PF04238 Protein of unknown function (DUF420) CUC43_30460 PF00324 Amino acid permease CUC43_30470 PF00704 Glycosyl hydrolases family 18 CUC43_30470 PF00041 Fibronectin type III domain CUC43_30475 PF10518 TAT (twin-arginine translocation) pathway signal sequence CUC43_30475 PF00149 Calcineurin-like phosphoesterase CUC43_30480 PF01226 Formate/nitrite transporter CUC43_30485 PF00216 Bacterial DNA-binding protein CUC43_30495 PF00403 Heavy-metal-associated domain CUC43_30500 PF00403 Heavy-metal-associated domain CUC43_30505 PF02583 Metal-sensitive transcriptional repressor CUC43_30515 PF00756 Putative esterase CUC43_30520 PF00005 ABC transporter CUC43_30525 PF01032 FecCD transport family CUC43_30530 PF01032 FecCD transport family CUC43_30535 PF01497 Periplasmic binding protein CUC43_30540 PF03372 Endonuclease/Exonuclease/phosphatase family CUC43_30545 PF12833 Helix-turn-helix domain CUC43_30545 PF02805 Metal binding domain of Ada CUC43_30550 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain CUC43_30550 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain CUC43_30555 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain CUC43_30555 PF00730 HhH-GPD superfamily base excision DNA repair protein CUC43_30560 PF07687 Peptidase dimerisation domain CUC43_30560 PF01546 Peptidase family M20/M25/M40 CUC43_30580 PF00561 alpha/beta hydrolase fold CUC43_30585 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily CUC43_30605 PF02567 Phenazine biosynthesis-like protein CUC43_30610 PF10787 Uncharacterised protein from bacillus cereus group CUC43_30615 PF04172 LrgB-like family CUC43_30620 PF03788 LrgA family CUC43_30625 PF00155 Aminotransferase class I and II CUC43_30625 PF00392 Bacterial regulatory proteins, gntR family CUC43_30630 PF00561 alpha/beta hydrolase fold CUC43_30635 PF02585 GlcNAc-PI de-N-acetylase CUC43_30645 PF07702 UTRA domain CUC43_30645 PF00392 Bacterial regulatory proteins, gntR family CUC43_30650 PF00232 Glycosyl hydrolase family 1 CUC43_30655 PF00388 Phosphatidylinositol-specific phospholipase C, X domain CUC43_30660 PF00082 Subtilase family CUC43_30665 PF07486 Cell Wall Hydrolase CUC43_30685 PF00350 Dynamin family CUC43_30700 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family CUC43_30705 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_30705 PF00512 His Kinase A (phospho-acceptor) domain CUC43_30710 PF00486 Transcriptional regulatory protein, C terminal CUC43_30710 PF00072 Response regulator receiver domain CUC43_30725 PF00005 ABC transporter CUC43_30730 PF08676 MutL C terminal dimerisation domain CUC43_30730 PF01119 DNA mismatch repair protein, C-terminal domain CUC43_30735 PF01624 MutS domain I CUC43_30735 PF05192 MutS domain III CUC43_30735 PF05190 MutS family domain IV CUC43_30735 PF00488 MutS domain V CUC43_30735 PF05188 MutS domain II CUC43_30740 PF10628 Outer spore coat protein E (CotE) CUC43_30745 PF06133 Control of competence regulator ComK, YlbF/YmcA CUC43_30750 PF04055 Radical SAM superfamily CUC43_30750 PF00919 Uncharacterized protein family UPF0004 CUC43_30750 PF01938 TRAM domain CUC43_30755 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain CUC43_30760 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II CUC43_30760 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg CUC43_30760 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase CUC43_30765 PF01244 Membrane dipeptidase (Peptidase family M19) CUC43_30770 PF04232 Stage V sporulation protein S (SpoVS) CUC43_30775 PF13277 YmdB-like protein CUC43_30780 PF01966 HD domain CUC43_30780 PF00013 KH domain CUC43_30780 PF12072 Domain of unknown function (DUF3552) CUC43_30785 PF00154 recA bacterial DNA recombination protein CUC43_30800 PF02464 Competence-damaged protein CUC43_30800 PF00994 Probable molybdopterin binding domain CUC43_30800 PF18146 Damage-inducible protein CinA KH domain CUC43_30805 PF01066 CDP-alcohol phosphatidyltransferase CUC43_30810 PF13464 Domain of unknown function (DUF4115) CUC43_30815 PF11868 Protein of unknown function (DUF3388) CUC43_30820 PF11588 Protein of unknown function (DUF3243) CUC43_30830 PF00675 Insulinase (Peptidase family M16) CUC43_30830 PF05193 Peptidase M16 inactive domain CUC43_30835 PF05193 Peptidase M16 inactive domain CUC43_30865 PF07702 UTRA domain CUC43_30865 PF00392 Bacterial regulatory proteins, gntR family CUC43_30875 PF09397 Ftsk gamma domain CUC43_30875 PF01580 FtsK/SpoIIIE family CUC43_30875 PF17854 FtsK alpha domain CUC43_30880 PF14035 YlzJ-like protein CUC43_30885 PF00574 Clp protease CUC43_30890 PF00753 Metallo-beta-lactamase superfamily CUC43_30890 PF17770 Ribonuclease J C-terminal domain CUC43_30890 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain CUC43_30900 PF00701 Dihydrodipicolinate synthetase family CUC43_30905 PF00696 Amino acid kinase family CUC43_30905 PF13840 ACT domain CUC43_30910 PF02774 Semialdehyde dehydrogenase, dimerisation domain CUC43_30910 PF01118 Semialdehyde dehydrogenase, NAD binding domain CUC43_30915 PF02441 Flavoprotein CUC43_30920 PF16924 Dipicolinate synthase subunit A N-terminal domain CUC43_30920 PF01262 Alanine dehydrogenase/PNT, C-terminal domain CUC43_30925 PF05239 PRC-barrel domain CUC43_30930 PF00675 Insulinase (Peptidase family M16) CUC43_30930 PF05193 Peptidase M16 inactive domain CUC43_30935 PF01522 Polysaccharide deacetylase CUC43_30940 PF00013 KH domain CUC43_30940 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain CUC43_30940 PF01138 3' exoribonuclease family, domain 1 CUC43_30940 PF03725 3' exoribonuclease family, domain 2 CUC43_30940 PF00575 S1 RNA binding domain CUC43_30945 PF00312 Ribosomal protein S15 CUC43_30950 PF01687 Riboflavin kinase CUC43_30950 PF06574 FAD synthetase CUC43_30955 PF01509 TruB family pseudouridylate synthase (N terminal domain) CUC43_30955 PF16198 tRNA pseudouridylate synthase B C-terminal domain CUC43_30960 PF02033 Ribosome-binding factor A CUC43_30965 PF04456 Protein of unknown function (DUF503) CUC43_30970 PF04760 Translation initiation factor IF-2, N-terminal region CUC43_30970 PF00009 Elongation factor Tu GTP binding domain CUC43_30970 PF11987 Translation-initiation factor 2 CUC43_30975 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family CUC43_30980 PF04296 Protein of unknown function (DUF448) CUC43_30985 PF13184 NusA-like KH domain CUC43_30985 PF00575 S1 RNA binding domain CUC43_30985 PF08529 NusA N-terminal domain CUC43_30990 PF02576 RimP N-terminal domain CUC43_30990 PF17384 RimP C-terminal SH3 domain CUC43_30995 PF00929 Exonuclease CUC43_30995 PF14579 Helix-hairpin-helix motif CUC43_30995 PF17657 Bacterial DNA polymerase III alpha subunit finger domain CUC43_30995 PF14480 DNA polymerase III polC-type N-terminus I CUC43_30995 PF11490 DNA polymerase III polC-type N-terminus II CUC43_30995 PF02811 PHP domain CUC43_30995 PF07733 Bacterial DNA polymerase III alpha NTPase domain CUC43_31005 PF04073 Aminoacyl-tRNA editing domain CUC43_31005 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) CUC43_31005 PF03129 Anticodon binding domain CUC43_31010 PF02163 Peptidase family M50 CUC43_31010 PF17820 PDZ domain CUC43_31015 PF13288 DXP reductoisomerase C-terminal domain CUC43_31015 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase CUC43_31015 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain CUC43_31025 PF01255 Putative undecaprenyl diphosphate synthase CUC43_31030 PF01765 Ribosome recycling factor CUC43_31035 PF00696 Amino acid kinase family CUC43_31040 PF00889 Elongation factor TS CUC43_31045 PF00318 Ribosomal protein S2 CUC43_31050 PF08222 CodY helix-turn-helix domain CUC43_31050 PF06018 CodY GAF-like domain CUC43_31055 PF10431 C-terminal, D2-small domain, of ClpB protein CUC43_31055 PF00004 ATPase family associated with various cellular activities (AAA) CUC43_31055 PF07724 AAA domain (Cdc48 subfamily) CUC43_31060 PF00227 Proteasome subunit CUC43_31065 PF00589 Phage integrase family CUC43_31065 PF02899 Phage integrase, N-terminal SAM-like domain CUC43_31070 PF01134 Glucose inhibited division protein A CUC43_31075 PF01751 Toprim domain CUC43_31075 PF01131 DNA topoisomerase CUC43_31075 PF01396 Topoisomerase DNA binding C4 zinc finger CUC43_31095 PF00549 CoA-ligase CUC43_31095 PF02629 CoA binding domain CUC43_31100 PF00549 CoA-ligase CUC43_31100 PF08442 ATP-grasp domain CUC43_31105 PF01351 Ribonuclease HII CUC43_31110 PF01926 50S ribosome-binding GTPase CUC43_31115 PF10502 Signal peptidase, peptidase S26 CUC43_31120 PF01245 Ribosomal protein L19 CUC43_31125 PF01746 tRNA (Guanine-1)-methyltransferase CUC43_31130 PF05239 PRC-barrel domain CUC43_31130 PF01782 RimM N-terminal domain CUC43_31140 PF00886 Ribosomal protein S16 CUC43_31145 PF02881 SRP54-type protein, helical bundle domain CUC43_31145 PF00448 SRP54-type protein, GTPase domain CUC43_31145 PF02978 Signal peptide binding domain CUC43_31150 PF04297 Putative helix-turn-helix protein, YlxM / p13 like CUC43_31155 PF02881 SRP54-type protein, helical bundle domain CUC43_31155 PF00448 SRP54-type protein, GTPase domain CUC43_31160 PF02463 RecF/RecN/SMC N terminal domain CUC43_31160 PF06470 SMC proteins Flexible Hinge Domain CUC43_31165 PF14622 Ribonuclease-III-like CUC43_31165 PF00035 Double-stranded RNA binding motif CUC43_31170 PF00550 Phosphopantetheine attachment site CUC43_31180 PF00698 Acyl transferase domain CUC43_31185 PF02504 Fatty acid synthesis protein CUC43_31190 PF03061 Thioesterase superfamily CUC43_31195 PF00271 Helicase conserved C-terminal domain CUC43_31195 PF17191 RecG wedge domain CUC43_31195 PF00270 DEAD/DEAH box helicase CUC43_31200 PF02734 DAK2 domain CUC43_31200 PF13684 Dihydroxyacetone kinase family CUC43_31205 PF03780 Asp23 family, cell envelope-related function CUC43_31210 PF00830 Ribosomal L28 family CUC43_31215 PF08183 Stage V sporulation protein family CUC43_31220 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain CUC43_31220 PF04263 Thiamin pyrophosphokinase, catalytic domain CUC43_31225 PF00834 Ribulose-phosphate 3 epimerase family CUC43_31230 PF16745 RsgA N-terminal domain CUC43_31230 PF03193 RsgA GTPase CUC43_31235 PF00069 Protein kinase domain CUC43_31235 PF03793 PASTA domain CUC43_31245 PF01526 Tn3 transposase DDE domain CUC43_31245 PF13700 Domain of unknown function (DUF4158) CUC43_31250 PF13700 Domain of unknown function (DUF4158) CUC43_31250 PF01526 Tn3 transposase DDE domain CUC43_31270 PF13610 DDE domain CUC43_31275 PF13610 DDE domain CUC43_31285 PF13610 DDE domain CUC43_31305 PF13610 DDE domain CUC43_31315 PF09156 Anthrax toxin lethal factor, middle domain CUC43_31315 PF07737 Anthrax toxin lethal factor, N- and C-terminal domain CUC43_31320 PF03495 Clostridial binary toxin B/anthrax toxin PA Ca-binding domain CUC43_31320 PF17475 Clostridial binary toxin B/anthrax toxin PA domain 2 CUC43_31320 PF17476 Clostridial binary toxin B/anthrax toxin PA domain 3 CUC43_31320 PF07691 PA14 domain CUC43_31325 PF13610 DDE domain CUC43_31335 PF17997 Insecticidal delta-endotoxin CryIA(c) domain 5 CUC43_31335 PF03944 delta endotoxin CUC43_31335 PF03945 delta endotoxin, N-terminal domain CUC43_31335 PF00555 delta endotoxin CUC43_31335 PF03944 delta endotoxin CUC43_31335 PF03945 delta endotoxin, N-terminal domain CUC43_31335 PF00555 delta endotoxin CUC43_31335 PF17997 Insecticidal delta-endotoxin CryIA(c) domain 5 CUC43_31340 PF00555 delta endotoxin CUC43_31340 PF03945 delta endotoxin, N-terminal domain CUC43_31340 PF17997 Insecticidal delta-endotoxin CryIA(c) domain 5 CUC43_31340 PF03944 delta endotoxin CUC43_31345 PF07029 CryBP1 protein CUC43_31355 PF00072 Response regulator receiver domain CUC43_31355 PF00486 Transcriptional regulatory protein, C terminal CUC43_31365 PF13610 DDE domain CUC43_31380 PF13426 PAS domain CUC43_31380 PF13188 PAS domain CUC43_31380 PF00989 PAS fold CUC43_31380 PF00512 His Kinase A (phospho-acceptor) domain CUC43_31380 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_31420 PF17475 Clostridial binary toxin B/anthrax toxin PA domain 2 CUC43_31420 PF03495 Clostridial binary toxin B/anthrax toxin PA Ca-binding domain CUC43_31420 PF07691 PA14 domain CUC43_31420 PF17476 Clostridial binary toxin B/anthrax toxin PA domain 3 CUC43_31465 PF07691 PA14 domain CUC43_31465 PF17476 Clostridial binary toxin B/anthrax toxin PA domain 3 CUC43_31465 PF17475 Clostridial binary toxin B/anthrax toxin PA domain 2 CUC43_31465 PF03495 Clostridial binary toxin B/anthrax toxin PA Ca-binding domain CUC43_31470 PF13610 DDE domain CUC43_31505 PF08279 HTH domain CUC43_31505 PF13280 WYL domain CUC43_31510 PF13610 DDE domain CUC43_31550 PF07694 5TMR of 5TMR-LYT CUC43_31550 PF00990 Diguanylate cyclase, GGDEF domain CUC43_31585 PF13610 DDE domain CUC43_31630 PF13610 DDE domain CUC43_31635 PF13610 DDE domain CUC43_31645 PF13610 DDE domain CUC43_31660 PF13610 DDE domain CUC43_31670 PF01338 Bacillus thuringiensis toxin CUC43_31680 PF13610 DDE domain CUC43_31685 PF01338 Bacillus thuringiensis toxin CUC43_31695 PF13610 DDE domain CUC43_31735 PF13411 MerR HTH family regulatory protein CUC43_31735 PF13152 Protein of unknown function (DUF3967) CUC43_31750 PF00375 Sodium:dicarboxylate symporter family CUC43_31755 PF05525 Branched-chain amino acid transport protein CUC43_31785 PF13610 DDE domain CUC43_31795 PF02899 Phage integrase, N-terminal SAM-like domain CUC43_31795 PF00589 Phage integrase family CUC43_31805 PF01022 Bacterial regulatory protein, arsR family CUC43_31810 PF13610 DDE domain CUC43_31815 PF00885 6,7-dimethyl-8-ribityllumazine synthase CUC43_31895 PF02687 FtsX-like permease family CUC43_31895 PF12704 MacB-like periplasmic core domain CUC43_31900 PF00005 ABC transporter CUC43_31930 PF00005 ABC transporter CUC43_31945 PF00239 Resolvase, N terminal domain CUC43_31945 PF02796 Helix-turn-helix domain of resolvase CUC43_31960 PF12389 Camelysin metallo-endopeptidase CUC43_31970 PF17209 Hfq protein CUC43_31975 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CUC43_31975 PF18277 AbrB C-terminal domain CUC43_31980 PF01022 Bacterial regulatory protein, arsR family CUC43_31995 PF13610 DDE domain CUC43_32035 PF00665 Integrase core domain CUC43_32045 PF03496 ADP-ribosyltransferase exoenzyme CUC43_32050 PF07691 PA14 domain CUC43_32050 PF17476 Clostridial binary toxin B/anthrax toxin PA domain 3 CUC43_32050 PF03495 Clostridial binary toxin B/anthrax toxin PA Ca-binding domain CUC43_32050 PF17475 Clostridial binary toxin B/anthrax toxin PA domain 2 CUC43_32080 PF13610 DDE domain CUC43_32095 PF13610 DDE domain CUC43_32120 PF13610 DDE domain CUC43_32135 PF02272 DHHA1 domain CUC43_32135 PF01411 tRNA synthetases class II (A) CUC43_32135 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain CUC43_32140 PF00291 Pyridoxal-phosphate dependent enzyme CUC43_32145 PF00155 Aminotransferase class I and II CUC43_32150 PF00892 EamA-like transporter family CUC43_32165 PF03945 delta endotoxin, N-terminal domain CUC43_32165 PF03945 delta endotoxin, N-terminal domain CUC43_32165 PF03944 delta endotoxin CUC43_32165 PF03944 delta endotoxin CUC43_32165 PF00555 delta endotoxin CUC43_32165 PF17997 Insecticidal delta-endotoxin CryIA(c) domain 5 CUC43_32165 PF00555 delta endotoxin CUC43_32165 PF17997 Insecticidal delta-endotoxin CryIA(c) domain 5 CUC43_32170 PF03944 delta endotoxin CUC43_32170 PF00555 delta endotoxin CUC43_32170 PF03945 delta endotoxin, N-terminal domain CUC43_32170 PF17997 Insecticidal delta-endotoxin CryIA(c) domain 5 CUC43_32175 PF07029 CryBP1 protein CUC43_32180 PF13610 DDE domain CUC43_32195 PF05593 RHS Repeat CUC43_32200 PF13610 DDE domain CUC43_32240 PF01593 Flavin containing amine oxidoreductase CUC43_32260 PF01548 Transposase CUC43_32260 PF02371 Transposase IS116/IS110/IS902 family CUC43_32265 PF13610 DDE domain CUC43_32270 PF13419 Haloacid dehalogenase-like hydrolase CUC43_32300 PF03945 delta endotoxin, N-terminal domain CUC43_32300 PF00555 delta endotoxin CUC43_32300 PF03944 delta endotoxin CUC43_32300 PF17997 Insecticidal delta-endotoxin CryIA(c) domain 5 CUC43_32320 PF02687 FtsX-like permease family CUC43_32325 PF00005 ABC transporter CUC43_32330 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase CUC43_32335 PF00486 Transcriptional regulatory protein, C terminal CUC43_32335 PF00072 Response regulator receiver domain CUC43_32340 PF13610 DDE domain CUC43_32345 PF13610 DDE domain CUC43_32400 PF13610 DDE domain CUC43_32425 PF13610 DDE domain CUC43_32465 PF13610 DDE domain CUC43_32480 PF03323 Bacillus/Clostridium GerA spore germination protein CUC43_32490 PF02796 Helix-turn-helix domain of resolvase CUC43_32490 PF00239 Resolvase, N terminal domain CUC43_32500 PF00005 ABC transporter CUC43_32515 PF01609 Transposase DDE domain CUC43_32525 PF13610 DDE domain CUC43_32540 PF13610 DDE domain CUC43_32555 PF00535 Glycosyl transferase family 2 CUC43_32575 PF13700 Domain of unknown function (DUF4158) CUC43_32575 PF01526 Tn3 transposase DDE domain CUC43_32580 PF02796 Helix-turn-helix domain of resolvase CUC43_32580 PF00239 Resolvase, N terminal domain CUC43_32595 PF01022 Bacterial regulatory protein, arsR family CUC43_32600 PF00216 Bacterial DNA-binding protein CUC43_32605 PF17209 Hfq protein CUC43_32610 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CUC43_32610 PF18277 AbrB C-terminal domain CUC43_32620 PF10502 Signal peptidase, peptidase S26 CUC43_32635 PF13610 DDE domain CUC43_32640 PF00501 AMP-binding enzyme CUC43_32640 PF13193 AMP-binding enzyme C-terminal domain CUC43_32640 PF00668 Condensation domain CUC43_32640 PF00550 Phosphopantetheine attachment site CUC43_32645 PF00239 Resolvase, N terminal domain CUC43_32645 PF02796 Helix-turn-helix domain of resolvase CUC43_32685 PF01385 Probable transposase CUC43_32685 PF07282 Putative transposase DNA-binding domain CUC43_32685 PF12323 Helix-turn-helix domain CUC43_32755 PF18801 response regulator aspartate phosphatase H, N terminal CUC43_32790 PF01381 Helix-turn-helix CUC43_32885 PF02534 Type IV secretory system Conjugative DNA transfer CUC43_32915 PF00877 NlpC/P60 family CUC43_32965 PF18840 Large polyvalent protein associated domain 25 CUC43_32980 PF01751 Toprim domain CUC43_32980 PF01131 DNA topoisomerase CUC43_32980 PF13342 C-terminal repeat of topoisomerase CUC43_33010 PF01548 Transposase CUC43_33010 PF02371 Transposase IS116/IS110/IS902 family CUC43_33020 PF01131 DNA topoisomerase CUC43_33020 PF01396 Topoisomerase DNA binding C4 zinc finger CUC43_33020 PF01751 Toprim domain CUC43_33035 PF01348 Type II intron maturase CUC43_33035 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) CUC43_33050 PF18277 AbrB C-terminal domain CUC43_33050 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CUC43_33055 PF00216 Bacterial DNA-binding protein CUC43_33105 PF01548 Transposase CUC43_33105 PF02371 Transposase IS116/IS110/IS902 family CUC43_33120 PF00535 Glycosyl transferase family 2 CUC43_33170 PF13610 DDE domain CUC43_33200 PF13610 DDE domain CUC43_33220 PF00291 Pyridoxal-phosphate dependent enzyme CUC43_33240 PF07478 D-ala D-ala ligase C-terminus CUC43_33240 PF01820 D-ala D-ala ligase N-terminus CUC43_33255 PF13276 HTH-like domain CUC43_33255 PF00665 Integrase core domain CUC43_33255 PF13333 Integrase core domain CUC43_33305 PF02371 Transposase IS116/IS110/IS902 family CUC43_33305 PF01548 Transposase CUC43_33315 PF02899 Phage integrase, N-terminal SAM-like domain CUC43_33315 PF00589 Phage integrase family CUC43_33320 PF00239 Resolvase, N terminal domain CUC43_33320 PF02796 Helix-turn-helix domain of resolvase CUC43_33370 PF00239 Resolvase, N terminal domain CUC43_33370 PF02796 Helix-turn-helix domain of resolvase CUC43_33410 PF17997 Insecticidal delta-endotoxin CryIA(c) domain 5 CUC43_33410 PF00555 delta endotoxin CUC43_33410 PF03944 delta endotoxin CUC43_33410 PF03945 delta endotoxin, N-terminal domain CUC43_33425 PF01609 Transposase DDE domain CUC43_33450 PF13358 DDE superfamily endonuclease CUC43_33455 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) CUC43_33495 PF13610 DDE domain CUC43_33505 PF01131 DNA topoisomerase CUC43_33505 PF01751 Toprim domain CUC43_33570 PF00877 NlpC/P60 family CUC43_33605 PF02371 Transposase IS116/IS110/IS902 family CUC43_33605 PF01548 Transposase CUC43_33675 PF03389 MobA/MobL family CUC43_33675 PF01443 Viral (Superfamily 1) RNA helicase CUC43_33675 PF17841 BID domain of Bartonella effector protein (Bep) CUC43_33705 PF09397 Ftsk gamma domain CUC43_33705 PF01580 FtsK/SpoIIIE family CUC43_33705 PF17854 FtsK alpha domain CUC43_33725 PF07969 Amidohydrolase family CUC43_33740 PF18277 AbrB C-terminal domain CUC43_33740 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin CUC43_33745 PF17209 Hfq protein CUC43_33750 PF00216 Bacterial DNA-binding protein CUC43_33755 PF01022 Bacterial regulatory protein, arsR family CUC43_33790 PF00589 Phage integrase family CUC43_33795 PF03495 Clostridial binary toxin B/anthrax toxin PA Ca-binding domain CUC43_33795 PF17475 Clostridial binary toxin B/anthrax toxin PA domain 2 CUC43_33795 PF07691 PA14 domain CUC43_33795 PF17476 Clostridial binary toxin B/anthrax toxin PA domain 3 CUC43_33830 PF01520 N-acetylmuramoyl-L-alanine amidase CUC43_33830 PF05036 Sporulation related domain CUC43_33855 PF13610 DDE domain CUC43_33870 PF13610 DDE domain CUC43_33885 PF13610 DDE domain CUC43_33895 PF01609 Transposase DDE domain CUC43_33910 PF00005 ABC transporter CUC43_33930 PF13610 DDE domain CUC43_33945 PF00589 Phage integrase family CUC43_33950 PF14040 Deoxyribonuclease NucA/NucB CUC43_33960 PF13610 DDE domain CUC43_34015 PF13614 AAA domain CUC43_34075 PF13610 DDE domain CUC43_34090 PF13610 DDE domain CUC43_34105 PF13333 Integrase core domain CUC43_34105 PF00665 Integrase core domain CUC43_34105 PF13276 HTH-like domain CUC43_34125 PF01446 Replication protein CUC43_34140 PF01076 Plasmid recombination enzyme CUC43_34400 PF01446 Replication protein CUC43_34415 PF01076 Plasmid recombination enzyme CUC43_34435 PF01446 Replication protein