locus-tag class description MC28_0001 PF00571 CBS domain MC28_0004 PF00246 Zinc carboxypeptidase MC28_0004 PF08239 Bacterial SH3 domain MC28_0005 PF03070 TENA/THI-4/PQQC family MC28_0007 PF00528 Binding-protein-dependent transport system inner membrane component MC28_0008 PF09084 NMT1/THI5 like MC28_0009 PF02581 Thiamine monophosphate synthase MC28_0010 PF01266 FAD dependent oxidoreductase MC28_0011 PF02597 ThiS family MC28_0013 PF00899 ThiF family MC28_0014 PF08543 Phosphomethylpyrimidine kinase MC28_0018 PF03814 Potassium-transporting ATPase A subunit MC28_0021 PF02702 Osmosensitive K+ channel His kinase sensor domain MC28_0022 PF07690 Major Facilitator Superfamily MC28_0023 PF01047 MarR family MC28_0027 PF02653 Branched-chain amino acid transport system / permease component MC28_0028 PF00005 ABC transporter MC28_0029 PF13407 Periplasmic binding protein domain MC28_0032 PF03734 L,D-transpeptidase catalytic domain MC28_0032 PF17969 L,D-transpeptidase C-terminal domain MC28_0034 PF00085 Thioredoxin MC28_0035 PF02600 Disulfide bond formation protein DsbB MC28_0038 PF03845 Spore germination protein MC28_0040 PF03323 Bacillus/Clostridium GerA spore germination protein MC28_0042 PF00881 Nitroreductase family MC28_0043 PF04293 SpoVR like protein MC28_0048 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MC28_0048 PF07992 Pyridine nucleotide-disulphide oxidoreductase MC28_0049 PF02583 Metal-sensitive transcriptional repressor MC28_0050 PF01206 Sulfurtransferase TusA MC28_0050 PF00581 Rhodanese-like domain MC28_0051 PF00581 Rhodanese-like domain MC28_0051 PF00753 Metallo-beta-lactamase superfamily MC28_0052 PF01206 Sulfurtransferase TusA MC28_0053 PF00581 Rhodanese-like domain MC28_0053 PF01206 Sulfurtransferase TusA MC28_0054 PF00581 Rhodanese-like domain MC28_0055 PF13686 DsrE/DsrF/DrsH-like family MC28_0056 PF01925 Sulfite exporter TauE/SafE MC28_0058 PF03816 Cell envelope-related transcriptional attenuator domain MC28_0059 PF00107 Zinc-binding dehydrogenase MC28_0059 PF08240 Alcohol dehydrogenase GroES-like domain MC28_0060 PF02690 Na+/Pi-cotransporter MC28_0063 PF08240 Alcohol dehydrogenase GroES-like domain MC28_0063 PF00107 Zinc-binding dehydrogenase MC28_0064 PF07690 Major Facilitator Superfamily MC28_0066 PF00874 PRD domain MC28_0066 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 MC28_0066 PF05043 Mga helix-turn-helix domain MC28_0066 PF08279 HTH domain MC28_0067 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit MC28_0068 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit MC28_0069 PF02378 Phosphotransferase system, EIIC MC28_0072 PF06725 3D domain MC28_0072 PF01476 LysM domain MC28_0073 PF12704 MacB-like periplasmic core domain MC28_0073 PF02687 FtsX-like permease family MC28_0074 PF00005 ABC transporter MC28_0079 PF05525 Branched-chain amino acid transport protein MC28_0081 PF12652 CotJB protein MC28_0082 PF11007 Spore coat associated protein JA (CotJA) MC28_0085 PF02735 Ku70/Ku80 beta-barrel domain MC28_0087 PF09335 SNARE associated Golgi protein MC28_0094 PF13520 Amino acid permease MC28_0095 PF00999 Sodium/hydrogen exchanger family MC28_0097 PF01418 Helix-turn-helix domain, rpiR family MC28_0097 PF01380 SIS domain MC28_0098 PF13580 SIS domain MC28_0099 PF00367 phosphotransferase system, EIIB MC28_0099 PF02378 Phosphotransferase system, EIIC MC28_0101 PF07681 DoxX MC28_0105 PF00892 EamA-like transporter family MC28_0106 PF01037 Lrp/AsnC ligand binding domain MC28_0108 PF00561 alpha/beta hydrolase fold MC28_0108 PF00106 short chain dehydrogenase MC28_0109 PF13411 MerR HTH family regulatory protein MC28_0112 PF00893 Small Multidrug Resistance protein MC28_0113 PF00893 Small Multidrug Resistance protein MC28_0114 PF00440 Bacterial regulatory proteins, tetR family MC28_0114 PF17934 Tetracyclin repressor-like, C-terminal domain MC28_0115 PF07690 Major Facilitator Superfamily MC28_0116 PF01638 HxlR-like helix-turn-helix MC28_0118 PF02525 Flavodoxin-like fold MC28_0120 PF12793 Sugar transport-related sRNA regulator N-term MC28_0120 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MC28_0121 PF07690 Major Facilitator Superfamily MC28_0123 PF01965 DJ-1/PfpI family MC28_0125 PF13520 Amino acid permease MC28_0126 PF01177 Asp/Glu/Hydantoin racemase MC28_0127 PF00171 Aldehyde dehydrogenase family MC28_0129 PF00005 ABC transporter MC28_0129 PF00664 ABC transporter transmembrane region MC28_0130 PF00664 ABC transporter transmembrane region MC28_0130 PF00005 ABC transporter MC28_0131 PF00497 Bacterial extracellular solute-binding proteins, family 3 MC28_0132 PF00528 Binding-protein-dependent transport system inner membrane component MC28_0133 PF00005 ABC transporter MC28_0134 PF00269 Small, acid-soluble spore proteins, alpha/beta type MC28_0136 PF14398 YheC/D like ATP-grasp MC28_0138 PF04286 Protein of unknown function (DUF445) MC28_0139 PF06133 Control of competence regulator ComK, YlbF/YmcA MC28_0140 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MC28_0140 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MC28_0140 PF00205 Thiamine pyrophosphate enzyme, central domain MC28_0141 PF03306 Alpha-acetolactate decarboxylase MC28_0142 PF02245 Methylpurine-DNA glycosylase (MPG) MC28_0144 PF17210 SdrD B-like domain MC28_0144 PF10425 C-terminus of bacterial fibrinogen-binding adhesin MC28_0144 PF00746 LPXTG cell wall anchor motif MC28_0144 PF17961 Bacterial Ig domain MC28_0144 PF04650 YSIRK type signal peptide MC28_0145 PF04055 Radical SAM superfamily MC28_0146 PF00501 AMP-binding enzyme MC28_0146 PF13193 AMP-binding enzyme C-terminal domain MC28_0148 PF00916 Sulfate permease family MC28_0148 PF01740 STAS domain MC28_0150 PF00378 Enoyl-CoA hydratase/isomerase MC28_0154 PF05343 M42 glutamyl aminopeptidase MC28_0157 PF11121 Protein of unknown function (DUF2639) MC28_0159 PF08943 CsiD MC28_0160 PF01266 FAD dependent oxidoreductase MC28_0161 PF05544 Proline racemase MC28_0162 PF02423 Ornithine cyclodeaminase/mu-crystallin family MC28_0163 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MC28_0164 PF00528 Binding-protein-dependent transport system inner membrane component MC28_0165 PF00528 Binding-protein-dependent transport system inner membrane component MC28_0165 PF12911 N-terminal TM domain of oligopeptide transport permease C MC28_0166 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MC28_0166 PF00005 ABC transporter MC28_0167 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MC28_0167 PF00005 ABC transporter MC28_0168 PF04740 LXG domain of WXG superfamily MC28_0169 PF04634 Protein of unknown function, DUF600 MC28_0177 PF00083 Sugar (and other) transporter MC28_0178 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain MC28_0178 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_0179 PF00072 Response regulator receiver domain MC28_0179 PF12431 Transcriptional regulator MC28_0179 PF08279 HTH domain MC28_0180 PF03401 Tripartite tricarboxylate transporter family receptor MC28_0181 PF00293 NUDIX domain MC28_0182 PF08463 EcoEI R protein C-terminal MC28_0182 PF00271 Helicase conserved C-terminal domain MC28_0182 PF13588 Type I restriction enzyme R protein N terminus (HSDR_N) MC28_0182 PF04851 Type III restriction enzyme, res subunit MC28_0185 PF00772 DnaB-like helicase N terminal domain MC28_0185 PF03796 DnaB-like helicase C terminal domain MC28_0188 PF01925 Sulfite exporter TauE/SafE MC28_0191 PF07690 Major Facilitator Superfamily MC28_0199 PF01510 N-acetylmuramoyl-L-alanine amidase MC28_0199 PF01471 Putative peptidoglycan binding domain MC28_0201 PF03123 CAT RNA binding domain MC28_0201 PF00874 PRD domain MC28_0202 PF02378 Phosphotransferase system, EIIC MC28_0202 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 MC28_0202 PF00367 phosphotransferase system, EIIB MC28_0203 PF00232 Glycosyl hydrolase family 1 MC28_0205 PF01066 CDP-alcohol phosphatidyltransferase MC28_0207 PF09680 Family of unknown function MC28_0211 PF07690 Major Facilitator Superfamily MC28_0217 PF02733 Dak1 domain MC28_0219 PF02733 Dak1 domain MC28_0220 PF02525 Flavodoxin-like fold MC28_0221 PF02082 Transcriptional regulator MC28_0224 PF00486 Transcriptional regulatory protein, C terminal MC28_0224 PF00072 Response regulator receiver domain MC28_0225 PF00672 HAMP domain MC28_0225 PF00512 His Kinase A (phospho-acceptor) domain MC28_0225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_0228 PF05547 Immune inhibitor A peptidase M6 MC28_0231 PF11181 Heat induced stress protein YflT MC28_0232 PF05532 CsbD-like MC28_0235 PF01740 STAS domain MC28_0236 PF13581 Histidine kinase-like ATPase domain MC28_0239 PF13426 PAS domain MC28_0239 PF07228 Stage II sporulation protein E (SpoIIE) MC28_0240 PF01739 CheR methyltransferase, SAM binding domain MC28_0240 PF03705 CheR methyltransferase, all-alpha domain MC28_0241 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_0241 PF01627 Hpt domain MC28_0241 PF00072 Response regulator receiver domain MC28_0241 PF00512 His Kinase A (phospho-acceptor) domain MC28_0241 PF00497 Bacterial extracellular solute-binding proteins, family 3 MC28_0247 PF01906 Putative heavy-metal-binding MC28_0248 PF08240 Alcohol dehydrogenase GroES-like domain MC28_0248 PF00107 Zinc-binding dehydrogenase MC28_0251 PF11121 Protein of unknown function (DUF2639) MC28_0254 PF00149 Calcineurin-like phosphoesterase MC28_0255 PF13514 AAA domain MC28_0256 PF01336 OB-fold nucleic acid binding domain MC28_0256 PF01966 HD domain MC28_0259 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MC28_0260 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MC28_0261 PF17874 MalT-like TPR region MC28_0261 PF18801 response regulator aspartate phosphatase H, N terminal MC28_0263 PF08386 TAP-like protein MC28_0263 PF00561 alpha/beta hydrolase fold MC28_0264 PF14147 Sporulation protein YhaL MC28_0265 PF01381 Helix-turn-helix MC28_0266 PF04309 Glycerol-3-phosphate responsive antiterminator MC28_0267 PF00230 Major intrinsic protein MC28_0268 PF02782 FGGY family of carbohydrate kinases, C-terminal domain MC28_0268 PF00370 FGGY family of carbohydrate kinases, N-terminal domain MC28_0269 PF16901 C-terminal domain of alpha-glycerophosphate oxidase MC28_0269 PF01266 FAD dependent oxidoreductase MC28_0270 PF08281 Sigma-70, region 4 MC28_0270 PF04542 Sigma-70 region 2 MC28_0272 PF01098 Cell cycle protein MC28_0274 PF13538 UvrD-like helicase C-terminal domain MC28_0278 PF01047 MarR family MC28_0280 PF01230 HIT domain MC28_0281 PF00005 ABC transporter MC28_0282 PF05975 Bacterial ABC transporter protein EcsB MC28_0283 PF12787 EcsC protein family MC28_0285 PF17934 Tetracyclin repressor-like, C-terminal domain MC28_0285 PF00440 Bacterial regulatory proteins, tetR family MC28_0287 PF03703 Bacterial PH domain MC28_0288 PF03703 Bacterial PH domain MC28_0298 PF03703 Bacterial PH domain MC28_0299 PF03703 Bacterial PH domain MC28_0300 PF03992 Antibiotic biosynthesis monooxygenase MC28_0301 PF00912 Transglycosylase MC28_0301 PF00905 Penicillin binding protein transpeptidase domain MC28_0302 PF01208 Uroporphyrinogen decarboxylase (URO-D) MC28_0310 PF03965 Penicillinase repressor MC28_0312 PF17932 Tetracyclin repressor-like, C-terminal domain MC28_0312 PF00440 Bacterial regulatory proteins, tetR family MC28_0321 PF00356 Bacterial regulatory proteins, lacI family MC28_0322 PF14149 YhfH-like protein MC28_0323 PF12706 Beta-lactamase superfamily domain MC28_0324 PF03099 Biotin/lipoate A/B protein ligase family MC28_0324 PF10437 Bacterial lipoate protein ligase C-terminus MC28_0326 PF13193 AMP-binding enzyme C-terminal domain MC28_0326 PF00501 AMP-binding enzyme MC28_0330 PF00149 Calcineurin-like phosphoesterase MC28_0332 PF01966 HD domain MC28_0334 PF08281 Sigma-70, region 4 MC28_0334 PF04542 Sigma-70 region 2 MC28_0335 PF06445 GyrI-like small molecule binding domain MC28_0335 PF12833 Helix-turn-helix domain MC28_0337 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_0337 PF00512 His Kinase A (phospho-acceptor) domain MC28_0338 PF00486 Transcriptional regulatory protein, C terminal MC28_0338 PF00072 Response regulator receiver domain MC28_0344 PF01435 Peptidase family M48 MC28_0344 PF16491 CAAX prenyl protease N-terminal, five membrane helices MC28_0345 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MC28_0345 PF00672 HAMP domain MC28_0345 PF02743 Cache domain MC28_0346 PF00892 EamA-like transporter family MC28_0347 PF01274 Malate synthase MC28_0348 PF00463 Isocitrate lyase family MC28_0352 PF00313 'Cold-shock' DNA-binding domain MC28_0354 PF06338 ComK protein MC28_0355 PF09335 SNARE associated Golgi protein MC28_0356 PF10502 Signal peptidase, peptidase S26 MC28_0357 PF12705 PD-(D/E)XK nuclease superfamily MC28_0357 PF13361 UvrD-like helicase C-terminal domain MC28_0358 PF00580 UvrD/REP helicase N-terminal domain MC28_0358 PF13361 UvrD-like helicase C-terminal domain MC28_0358 PF12705 PD-(D/E)XK nuclease superfamily MC28_0359 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain MC28_0359 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain MC28_0359 PF01000 RNA polymerase Rpb3/RpoA insert domain MC28_0360 PF10676 Spore germination protein gerPA/gerPF MC28_0361 PF10970 Spore germination protein GerPE MC28_0363 PF10737 Spore germination protein GerPC MC28_0364 PF10803 Spore germination GerPB MC28_0365 PF10676 Spore germination protein gerPA/gerPF MC28_0366 PF09388 Spo0E like sporulation regulatory protein MC28_0367 PF01557 Fumarylacetoacetate (FAA) hydrolase family MC28_0369 PF00202 Aminotransferase class-III MC28_0370 PF07457 Protein of unknown function (DUF1516) MC28_0372 PF00733 Asparagine synthase MC28_0372 PF13537 Glutamine amidotransferase domain MC28_0374 PF06628 Catalase-related immune-responsive MC28_0374 PF00199 Catalase MC28_0375 PF00909 Ammonium Transporter Family MC28_0376 PF00128 Alpha amylase, catalytic domain MC28_0377 PF04461 Protein of unknown function (DUF520) MC28_0378 PF13509 S1 domain MC28_0378 PF17783 CvfB-like winged helix domain MC28_0380 PF05593 RHS Repeat MC28_0381 PF05593 RHS Repeat MC28_0385 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 MC28_0385 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) MC28_0386 PF12758 Protein of unknown function (DUF3813) MC28_0389 PF14168 YjzC-like protein MC28_0390 PF00004 ATPase family associated with various cellular activities (AAA) MC28_0390 PF07724 AAA domain (Cdc48 subfamily) MC28_0390 PF10431 C-terminal, D2-small domain, of ClpB protein MC28_0390 PF02861 Clp amino terminal domain, pathogenicity island component MC28_0390 PF17871 AAA lid domain MC28_0394 PF10815 ComZ MC28_0395 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal MC28_0395 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III MC28_0396 PF00109 Beta-ketoacyl synthase, N-terminal domain MC28_0396 PF02801 Beta-ketoacyl synthase, C-terminal domain MC28_0397 PF10026 Predicted Zn-dependent protease (DUF2268) MC28_0398 PF12227 Protein of unknown function (DUF3603) MC28_0399 PF00579 tRNA synthetases class I (W and Y) MC28_0401 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MC28_0402 PF00528 Binding-protein-dependent transport system inner membrane component MC28_0403 PF12911 N-terminal TM domain of oligopeptide transport permease C MC28_0403 PF00528 Binding-protein-dependent transport system inner membrane component MC28_0405 PF00005 ABC transporter MC28_0405 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MC28_0408 PF01554 MatE MC28_0409 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MC28_0412 PF03960 ArsC family MC28_0413 PF03741 Integral membrane protein TerC family MC28_0414 PF05389 Negative regulator of genetic competence (MecA) MC28_0415 PF13396 Phospholipase_D-nuclease N-terminal MC28_0415 PF13091 PLD-like domain MC28_0417 PF08439 Oligopeptidase F MC28_0417 PF01432 Peptidase family M3 MC28_0420 PF01152 Bacterial-like globin MC28_0421 PF01928 CYTH domain MC28_0423 PF04607 Region found in RelA / SpoT proteins MC28_0424 PF01513 ATP-NAD kinase MC28_0425 PF00849 RNA pseudouridylate synthase MC28_0428 PF01098 Cell cycle protein MC28_0429 PF00535 Glycosyl transferase family 2 MC28_0430 PF08241 Methyltransferase domain MC28_0431 PF05711 Macrocin-O-methyltransferase (TylF) MC28_0434 PF00535 Glycosyl transferase family 2 MC28_0434 PF13181 Tetratricopeptide repeat MC28_0439 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase MC28_0440 PF16363 GDP-mannose 4,6 dehydratase MC28_0441 PF04321 RmlD substrate binding domain MC28_0445 PF07098 Protein of unknown function (DUF1360) MC28_0449 PF13361 UvrD-like helicase C-terminal domain MC28_0449 PF00580 UvrD/REP helicase N-terminal domain MC28_0450 PF13673 Acetyltransferase (GNAT) domain MC28_0455 PF02368 Bacterial Ig-like domain (group 2) MC28_0456 PF00474 Sodium:solute symporter family MC28_0459 PF00591 Glycosyl transferase family, a/b domain MC28_0459 PF02885 Glycosyl transferase family, helical bundle domain MC28_0459 PF00117 Glutamine amidotransferase class-I MC28_0460 PF02885 Glycosyl transferase family, helical bundle domain MC28_0460 PF00591 Glycosyl transferase family, a/b domain MC28_0461 PF00218 Indole-3-glycerol phosphate synthase MC28_0462 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase MC28_0464 PF00290 Tryptophan synthase alpha chain MC28_0466 PF02652 L-lactate permease MC28_0467 PF10042 Uncharacterized conserved protein (DUF2278) MC28_0476 PF07992 Pyridine nucleotide-disulphide oxidoreductase MC28_0476 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MC28_0479 PF01209 ubiE/COQ5 methyltransferase family MC28_0483 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) MC28_0483 PF00364 Biotin-requiring enzyme MC28_0483 PF02817 e3 binding domain MC28_0484 PF00676 Dehydrogenase E1 component MC28_0484 PF16870 2-oxoglutarate dehydrogenase C-terminal MC28_0484 PF02779 Transketolase, pyrimidine binding domain MC28_0485 PF01381 Helix-turn-helix MC28_0492 PF13732 Domain of unknown function (DUF4162) MC28_0492 PF00005 ABC transporter MC28_0499 PF00589 Phage integrase family MC28_0499 PF14659 Phage integrase, N-terminal SAM-like domain MC28_0505 PF00768 D-alanyl-D-alanine carboxypeptidase MC28_0505 PF07943 Penicillin-binding protein 5, C-terminal domain MC28_0507 PF12389 Camelysin metallo-endopeptidase MC28_0509 PF12389 Camelysin metallo-endopeptidase MC28_0510 PF01381 Helix-turn-helix MC28_0510 PF08671 Anti-repressor SinI MC28_0512 PF05547 Immune inhibitor A peptidase M6 MC28_0513 PF00171 Aldehyde dehydrogenase family MC28_0515 PF00005 ABC transporter MC28_0515 PF08402 TOBE domain MC28_0517 PF00528 Binding-protein-dependent transport system inner membrane component MC28_0518 PF13416 Bacterial extracellular solute-binding protein MC28_0519 PF01569 PAP2 superfamily MC28_0522 PF00849 RNA pseudouridylate synthase MC28_0522 PF01479 S4 domain MC28_0524 PF00188 Cysteine-rich secretory protein family MC28_0525 PF02754 Cysteine-rich domain MC28_0525 PF13183 4Fe-4S dicluster domain MC28_0526 PF01565 FAD binding domain MC28_0526 PF02913 FAD linked oxidases, C-terminal domain MC28_0527 PF13556 PucR C-terminal helix-turn-helix domain MC28_0527 PF17853 GGDEF-like domain MC28_0527 PF05651 Putative sugar diacid recognition MC28_0529 PF00072 Response regulator receiver domain MC28_0529 PF00486 Transcriptional regulatory protein, C terminal MC28_0530 PF18698 Histidine kinase sensor domain MC28_0530 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_0530 PF00672 HAMP domain MC28_0530 PF00989 PAS fold MC28_0530 PF00512 His Kinase A (phospho-acceptor) domain MC28_0531 PF00392 Bacterial regulatory proteins, gntR family MC28_0531 PF07729 FCD domain MC28_0532 PF02754 Cysteine-rich domain MC28_0533 PF11870 Domain of unknown function (DUF3390) MC28_0533 PF13183 4Fe-4S dicluster domain MC28_0533 PF02589 LUD domain MC28_0534 PF02589 LUD domain MC28_0535 PF01478 Type IV leader peptidase family MC28_0535 PF06750 Bacterial Peptidase A24 N-terminal domain MC28_0537 PF01226 Formate/nitrite transporter MC28_0538 PF03741 Integral membrane protein TerC family MC28_0539 PF02386 Cation transport protein MC28_0540 PF00269 Small, acid-soluble spore proteins, alpha/beta type MC28_0541 PF01575 MaoC like domain MC28_0546 PF00561 alpha/beta hydrolase fold MC28_0548 PF02386 Cation transport protein MC28_0552 PF00005 ABC transporter MC28_0552 PF08402 TOBE domain MC28_0553 PF00528 Binding-protein-dependent transport system inner membrane component MC28_0554 PF13419 Haloacid dehalogenase-like hydrolase MC28_0555 PF00266 Aminotransferase class-V MC28_0557 PF00455 DeoR C terminal sensor domain MC28_0557 PF08220 DeoR-like helix-turn-helix domain MC28_0561 PF00596 Class II Aldolase and Adducin N-terminal domain MC28_0563 PF04748 Divergent polysaccharide deacetylase MC28_0564 PF09388 Spo0E like sporulation regulatory protein MC28_0565 PF00512 His Kinase A (phospho-acceptor) domain MC28_0565 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_0565 PF02743 Cache domain MC28_0566 PF01047 MarR family MC28_0568 PF12867 DinB superfamily MC28_0570 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_0570 PF00512 His Kinase A (phospho-acceptor) domain MC28_0570 PF13426 PAS domain MC28_0570 PF13188 PAS domain MC28_0570 PF00989 PAS fold MC28_0571 PF06508 Queuosine biosynthesis protein QueC MC28_0572 PF01242 6-pyruvoyl tetrahydropterin synthase MC28_0573 PF04055 Radical SAM superfamily MC28_0574 PF14489 QueF-like protein MC28_0578 PF00583 Acetyltransferase (GNAT) family MC28_0581 PF07972 NrdI Flavodoxin like MC28_0584 PF00268 Ribonucleotide reductase, small chain MC28_0585 PF00324 Amino acid permease MC28_0586 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MC28_0586 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain MC28_0589 PF02954 Bacterial regulatory protein, Fis family MC28_0589 PF00158 Sigma-54 interaction domain MC28_0589 PF00072 Response regulator receiver domain MC28_0591 PF00202 Aminotransferase class-III MC28_0592 PF00392 Bacterial regulatory proteins, gntR family MC28_0595 PF00005 ABC transporter MC28_0599 PF01037 Lrp/AsnC ligand binding domain MC28_0601 PF00857 Isochorismatase family MC28_0603 PF17676 LD-carboxypeptidase C-terminal domain MC28_0603 PF02016 LD-carboxypeptidase N-terminal domain MC28_0604 PF03060 Nitronate monooxygenase MC28_0605 PF04914 DltD protein MC28_0606 PF00550 Phosphopantetheine attachment site MC28_0607 PF03062 MBOAT, membrane-bound O-acyltransferase family MC28_0608 PF13193 AMP-binding enzyme C-terminal domain MC28_0608 PF00501 AMP-binding enzyme MC28_0610 PF01546 Peptidase family M20/M25/M40 MC28_0610 PF07687 Peptidase dimerisation domain MC28_0612 PF00258 Flavodoxin MC28_0615 PF01636 Phosphotransferase enzyme family MC28_0619 PF01554 MatE MC28_0620 PF02673 Bacitracin resistance protein BacA MC28_0624 PF01047 MarR family MC28_0626 PF00375 Sodium:dicarboxylate symporter family MC28_0627 PF02386 Cation transport protein MC28_0629 PF09579 Sporulation protein YtfJ (Spore_YtfJ) MC28_0631 PF03698 Uncharacterised protein family (UPF0180) MC28_0633 PF01063 Amino-transferase class IV MC28_0634 PF00205 Thiamine pyrophosphate enzyme, central domain MC28_0634 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MC28_0634 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MC28_0635 PF01842 ACT domain MC28_0635 PF10369 Small subunit of acetolactate synthase MC28_0636 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain MC28_0636 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain MC28_0637 PF08502 LeuA allosteric (dimerisation) domain MC28_0637 PF00682 HMGL-like MC28_0638 PF00180 Isocitrate/isopropylmalate dehydrogenase MC28_0640 PF00694 Aconitase C-terminal domain MC28_0641 PF13393 Histidyl-tRNA synthetase MC28_0642 PF01634 ATP phosphoribosyltransferase MC28_0643 PF00815 Histidinol dehydrogenase MC28_0644 PF00475 Imidazoleglycerol-phosphate dehydratase MC28_0646 PF00977 Histidine biosynthesis protein MC28_0647 PF00977 Histidine biosynthesis protein MC28_0648 PF01502 Phosphoribosyl-AMP cyclohydrolase MC28_0650 PF02811 PHP domain MC28_0652 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MC28_0652 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MC28_0653 PF01066 CDP-alcohol phosphatidyltransferase MC28_0654 PF00884 Sulfatase MC28_0656 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain MC28_0656 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain MC28_0658 PF01507 Phosphoadenosine phosphosulfate reductase family MC28_0659 PF01747 ATP-sulfurylase MC28_0659 PF14306 PUA-like domain MC28_0661 PF01077 Nitrite and sulphite reductase 4Fe-4S domain MC28_0661 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain MC28_0663 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MC28_0664 PF01903 CbiX MC28_0666 PF00209 Sodium:neurotransmitter symporter family MC28_0669 PF00375 Sodium:dicarboxylate symporter family MC28_0671 PF03553 Na+/H+ antiporter family MC28_0674 PF09922 Cell wall-active antibiotics response 4TMS YvqF MC28_0675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_0675 PF07730 Histidine kinase MC28_0675 PF00672 HAMP domain MC28_0676 PF00072 Response regulator receiver domain MC28_0676 PF00196 Bacterial regulatory proteins, luxR family MC28_0678 PF05525 Branched-chain amino acid transport protein MC28_0679 PF01209 ubiE/COQ5 methyltransferase family MC28_0684 PF00970 Oxidoreductase FAD-binding domain MC28_0684 PF00175 Oxidoreductase NAD-binding domain MC28_0684 PF00042 Globin MC28_0687 PF01925 Sulfite exporter TauE/SafE MC28_0688 PF01384 Phosphate transporter family MC28_0689 PF01865 Protein of unknown function DUF47 MC28_0690 PF00912 Transglycosylase MC28_0690 PF00905 Penicillin binding protein transpeptidase domain MC28_0693 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_0693 PF00512 His Kinase A (phospho-acceptor) domain MC28_0693 PF00989 PAS fold MC28_0694 PF01904 Protein of unknown function DUF72 MC28_0696 PF00589 Phage integrase family MC28_0697 PF00512 His Kinase A (phospho-acceptor) domain MC28_0697 PF16736 Single Cache-like MC28_0697 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_0697 PF00989 PAS fold MC28_0698 PF01048 Phosphorylase superfamily MC28_0700 PF03706 Lysylphosphatidylglycerol synthase TM region MC28_0700 PF09924 Uncharacterised conserved protein (DUF2156) MC28_0703 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain MC28_0703 PF02777 Iron/manganese superoxide dismutases, C-terminal domain MC28_0704 PF07943 Penicillin-binding protein 5, C-terminal domain MC28_0704 PF00768 D-alanyl-D-alanine carboxypeptidase MC28_0705 PF07670 Nucleoside recognition MC28_0706 PF07670 Nucleoside recognition MC28_0707 PF01479 S4 domain MC28_0707 PF00849 RNA pseudouridylate synthase MC28_0708 PF00578 AhpC/TSA family MC28_0709 PF05140 ResB-like family MC28_0710 PF01578 Cytochrome C assembly protein MC28_0711 PF00072 Response regulator receiver domain MC28_0711 PF00486 Transcriptional regulatory protein, C terminal MC28_0712 PF00989 PAS fold MC28_0712 PF00512 His Kinase A (phospho-acceptor) domain MC28_0712 PF18698 Histidine kinase sensor domain MC28_0712 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_0712 PF00672 HAMP domain MC28_0713 PF01923 Cobalamin adenosyltransferase MC28_0714 PF01551 Peptidase family M23 MC28_0716 PF12822 ECF transporter, substrate-specific component MC28_0718 PF14493 Helix-turn-helix domain MC28_0719 PF00271 Helicase conserved C-terminal domain MC28_0719 PF00270 DEAD/DEAH box helicase MC28_0720 PF02517 CPBP intramembrane metalloprotease MC28_0722 PF00149 Calcineurin-like phosphoesterase MC28_0723 PF13411 MerR HTH family regulatory protein MC28_0724 PF05389 Negative regulator of genetic competence (MecA) MC28_0725 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MC28_0725 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain MC28_0730 PF00710 Asparaginase, N-terminal MC28_0730 PF17763 Glutaminase/Asparaginase C-terminal domain MC28_0731 PF02224 Cytidylate kinase MC28_0733 PF01070 FMN-dependent dehydrogenase MC28_0734 PF14140 YpzI-like protein MC28_0736 PF14045 YIEGIA protein MC28_0738 PF01926 50S ribosome-binding GTPase MC28_0738 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal MC28_0739 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus MC28_0739 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus MC28_0741 PF10966 Protein of unknown function (DUF2768) MC28_0743 PF09547 Stage IV sporulation protein A (spore_IV_A) MC28_0744 PF00216 Bacterial DNA-binding protein MC28_0745 PF01227 GTP cyclohydrolase I MC28_0746 PF07307 Heptaprenyl diphosphate synthase (HEPPP synthase) subunit 1 MC28_0747 PF01209 ubiE/COQ5 methyltransferase family MC28_0748 PF00348 Polyprenyl synthetase MC28_0749 PF00334 Nucleoside diphosphate kinase MC28_0750 PF01264 Chorismate synthase MC28_0751 PF01761 3-dehydroquinate synthase MC28_0752 PF00155 Aminotransferase class I and II MC28_0754 PF08858 IDEAL domain MC28_0754 PF08864 UPF0302 domain MC28_0755 PF10673 Protein of unknown function (DUF2487) MC28_0756 PF00355 Rieske [2Fe-2S] domain MC28_0758 PF13442 Cytochrome C oxidase, cbb3-type, subunit III MC28_0758 PF00032 Cytochrome b(C-terminal)/b6/petD MC28_0759 PF07187 Protein of unknown function (DUF1405) MC28_0761 PF09577 Sporulation protein YpjB (SpoYpjB) MC28_0762 PF04298 Putative neutral zinc metallopeptidase MC28_0764 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 MC28_0764 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) MC28_0765 PF03819 MazG nucleotide pyrophosphohydrolase domain MC28_0766 PF01113 Dihydrodipicolinate reductase, N-terminus MC28_0766 PF05173 Dihydrodipicolinate reductase, C-terminus MC28_0767 PF02142 MGS-like domain MC28_0768 PF02585 GlcNAc-PI de-N-acetylase MC28_0769 PF00534 Glycosyl transferases group 1 MC28_0769 PF13439 Glycosyltransferase Family 4 MC28_0770 PF13735 tRNA nucleotidyltransferase domain 2 putative MC28_0770 PF12627 Probable RNA and SrmB- binding site of polymerase A MC28_0770 PF01743 Poly A polymerase head domain MC28_0771 PF02237 Biotin protein ligase C terminal domain MC28_0771 PF08279 HTH domain MC28_0771 PF03099 Biotin/lipoate A/B protein ligase family MC28_0773 PF02548 Ketopantoate hydroxymethyltransferase MC28_0774 PF02569 Pantoate-beta-alanine ligase MC28_0775 PF02261 Aspartate decarboxylase MC28_0776 PF04851 Type III restriction enzyme, res subunit MC28_0776 PF00929 Exonuclease MC28_0776 PF13307 Helicase C-terminal domain MC28_0777 PF14084 Protein of unknown function (DUF4264) MC28_0779 PF00155 Aminotransferase class I and II MC28_0780 PF07261 Replication initiation and membrane attachment MC28_0781 PF00730 HhH-GPD superfamily base excision DNA repair protein MC28_0781 PF00633 Helix-hairpin-helix motif MC28_0781 PF10576 Iron-sulfur binding domain of endonuclease III MC28_0783 PF00905 Penicillin binding protein transpeptidase domain MC28_0783 PF00912 Transglycosylase MC28_0784 PF03838 Recombination protein U MC28_0785 PF10720 Protein of unknown function (DUF2515) MC28_0792 PF06908 YspA SLOG family MC28_0794 PF02926 THUMP domain MC28_0794 PF01170 Putative RNA methylase family UPF0020 MC28_0795 PF00589 Phage integrase family MC28_0795 PF02899 Phage integrase, N-terminal SAM-like domain MC28_0809 PF06458 MucBP domain MC28_0815 PF02074 Carboxypeptidase Taq (M32) metallopeptidase MC28_0817 PF01636 Phosphotransferase enzyme family MC28_0818 PF00557 Metallopeptidase family M24 MC28_0820 PF00156 Phosphoribosyl transferase domain MC28_0821 PF00860 Permease family MC28_0822 PF04235 Protein of unknown function (DUF418) MC28_0823 PF00350 Dynamin family MC28_0825 PF00583 Acetyltransferase (GNAT) family MC28_0826 PF10752 Protein of unknown function (DUF2533) MC28_0827 PF00581 Rhodanese-like domain MC28_0832 PF03738 Glutathionylspermidine synthase preATP-grasp MC28_0834 PF00689 Cation transporting ATPase, C-terminus MC28_0834 PF00690 Cation transporter/ATPase, N-terminus MC28_0835 PF01367 5'-3' exonuclease, C-terminal SAM fold MC28_0835 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain MC28_0838 PF13673 Acetyltransferase (GNAT) domain MC28_0838 PF18014 Acetyltransferase (GNAT) domain MC28_0842 PF13456 Reverse transcriptase-like MC28_0848 PF00313 'Cold-shock' DNA-binding domain MC28_0849 PF08892 YqcI/YcgG family MC28_0850 PF01810 LysE type translocator MC28_0853 PF04341 Protein of unknown function, DUF485 MC28_0854 PF00474 Sodium:solute symporter family MC28_0855 PF00202 Aminotransferase class-III MC28_0857 PF00999 Sodium/hydrogen exchanger family MC28_0858 PF13411 MerR HTH family regulatory protein MC28_0858 PF06445 GyrI-like small molecule binding domain MC28_0860 PF04239 Protein of unknown function (DUF421) MC28_0863 PF00881 Nitroreductase family MC28_0873 PF01618 MotA/TolQ/ExbB proton channel family MC28_0874 PF00691 OmpA family MC28_0874 PF13677 Membrane MotB of proton-channel complex MotA/MotB MC28_0876 PF01584 CheW-like domain MC28_0876 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_0876 PF01627 Hpt domain MC28_0876 PF07194 P2 response regulator binding domain MC28_0876 PF02895 Signal transducing histidine kinase, homodimeric domain MC28_0877 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term MC28_0877 PF04509 CheC-like family MC28_0880 PF03705 CheR methyltransferase, all-alpha domain MC28_0880 PF01739 CheR methyltransferase, SAM binding domain MC28_0884 PF00460 Flagella basal body rod protein MC28_0884 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MC28_0885 PF00669 Bacterial flagellin N-terminal helical region MC28_0885 PF00700 Bacterial flagellin C-terminal helical region MC28_0889 PF00460 Flagella basal body rod protein MC28_0890 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MC28_0890 PF00460 Flagella basal body rod protein MC28_0891 PF02049 Flagellar hook-basal body complex protein FliE MC28_0892 PF08345 Flagellar M-ring protein C-terminal MC28_0892 PF01514 Secretory protein of YscJ/FliF family MC28_0893 PF01706 FliG C-terminal domain MC28_0893 PF14841 FliG middle domain MC28_0893 PF14842 FliG N-terminal domain MC28_0895 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MC28_0895 PF02874 ATP synthase alpha/beta family, beta-barrel domain MC28_0895 PF18269 T3SS EscN ATPase C-terminal domain MC28_0899 PF00460 Flagella basal body rod protein MC28_0899 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MC28_0899 PF07559 Flagellar basal body protein FlaE MC28_0902 PF00072 Response regulator receiver domain MC28_0902 PF01584 CheW-like domain MC28_0903 PF12181 DNA binding domain of the motility gene repressor (MogR) MC28_0904 PF00669 Bacterial flagellin N-terminal helical region MC28_0904 PF00700 Bacterial flagellin C-terminal helical region MC28_0905 PF00669 Bacterial flagellin N-terminal helical region MC28_0905 PF00700 Bacterial flagellin C-terminal helical region MC28_0906 PF01464 Transglycosylase SLT domain MC28_0908 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term MC28_0908 PF02154 Flagellar motor switch protein FliM MC28_0909 PF04509 CheC-like family MC28_0909 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term MC28_0911 PF00813 FliP family MC28_0912 PF01313 Bacterial export proteins, family 3 MC28_0914 PF01312 FlhB HrpN YscU SpaS Family MC28_0915 PF00771 FHIPEP family MC28_0916 PF00448 SRP54-type protein, GTPase domain MC28_0917 PF06429 Flagellar basal body rod FlgEFG protein C-terminal MC28_0917 PF00460 Flagella basal body rod protein MC28_0918 PF00296 Luciferase-like monooxygenase MC28_0925 PF03992 Antibiotic biosynthesis monooxygenase MC28_0926 PF08141 Small acid-soluble spore protein H family MC28_0928 PF07690 Major Facilitator Superfamily MC28_0931 PF08402 TOBE domain MC28_0931 PF00005 ABC transporter MC28_0933 PF00528 Binding-protein-dependent transport system inner membrane component MC28_0936 PF10787 Uncharacterised protein from bacillus cereus group MC28_0941 PF00300 Histidine phosphatase superfamily (branch 1) MC28_0943 PF00561 alpha/beta hydrolase fold MC28_0945 PF01047 MarR family MC28_0947 PF00733 Asparagine synthase MC28_0947 PF13537 Glutamine amidotransferase domain MC28_0951 PF01545 Cation efflux family MC28_0951 PF16916 Dimerisation domain of Zinc Transporter MC28_0953 PF00392 Bacterial regulatory proteins, gntR family MC28_0953 PF07729 FCD domain MC28_0954 PF00892 EamA-like transporter family MC28_0956 PF07683 Cobalamin synthesis protein cobW C-terminal domain MC28_0956 PF02492 CobW/HypB/UreG, nucleotide-binding domain MC28_0957 PF03773 Predicted permease MC28_0959 PF00535 Glycosyl transferase family 2 MC28_0960 PF03553 Na+/H+ antiporter family MC28_0961 PF13411 MerR HTH family regulatory protein MC28_0962 PF00106 short chain dehydrogenase MC28_0963 PF00206 Lyase MC28_0963 PF10415 Fumarase C C-terminus MC28_0967 PF01554 MatE MC28_0968 PF03575 Peptidase family S51 MC28_0972 PF02683 Cytochrome C biogenesis protein transmembrane region MC28_0973 PF00578 AhpC/TSA family MC28_0976 PF00291 Pyridoxal-phosphate dependent enzyme MC28_0977 PF04286 Protein of unknown function (DUF445) MC28_0982 PF00072 Response regulator receiver domain MC28_0982 PF00196 Bacterial regulatory proteins, luxR family MC28_0984 PF00005 ABC transporter MC28_0987 PF13091 PLD-like domain MC28_0988 PF00696 Amino acid kinase family MC28_0989 PF00375 Sodium:dicarboxylate symporter family MC28_0990 PF00206 Lyase MC28_0990 PF10415 Fumarase C C-terminus MC28_0991 PF03949 Malic enzyme, NAD binding domain MC28_0991 PF00390 Malic enzyme, N-terminal domain MC28_0992 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_0993 PF00072 Response regulator receiver domain MC28_0993 PF08664 YcbB domain MC28_0994 PF01047 MarR family MC28_0995 PF07690 Major Facilitator Superfamily MC28_0996 PF12419 SNF2 Helicase protein MC28_0996 PF00271 Helicase conserved C-terminal domain MC28_0996 PF00176 SNF2 family N-terminal domain MC28_0999 PF03590 Aspartate-ammonia ligase MC28_1000 PF01381 Helix-turn-helix MC28_1001 PF13840 ACT domain MC28_1001 PF00696 Amino acid kinase family MC28_1003 PF13761 Domain of unknown function (DUF4166) MC28_1004 PF14158 YndJ-like protein MC28_1005 PF09297 NADH pyrophosphatase zinc ribbon domain MC28_1005 PF00293 NUDIX domain MC28_1012 PF03976 Polyphosphate kinase 2 (PPK2) MC28_1013 PF07690 Major Facilitator Superfamily MC28_1014 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III MC28_1014 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal MC28_1016 PF16360 GTP-binding GTPase Middle Region MC28_1016 PF01926 50S ribosome-binding GTPase MC28_1016 PF13167 GTP-binding GTPase N-terminal MC28_1017 PF07690 Major Facilitator Superfamily MC28_1018 PF00291 Pyridoxal-phosphate dependent enzyme MC28_1021 PF01943 Polysaccharide biosynthesis protein MC28_1021 PF14667 Polysaccharide biosynthesis C-terminal domain MC28_1022 PF00209 Sodium:neurotransmitter symporter family MC28_1023 PF03422 Carbohydrate binding module (family 6) MC28_1023 PF01522 Polysaccharide deacetylase MC28_1023 PF00457 Glycosyl hydrolases family 11 MC28_1025 PF04239 Protein of unknown function (DUF421) MC28_1029 PF01625 Peptide methionine sulfoxide reductase MC28_1031 PF01063 Amino-transferase class IV MC28_1032 PF00205 Thiamine pyrophosphate enzyme, central domain MC28_1032 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MC28_1032 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MC28_1034 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain MC28_1034 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain MC28_1035 PF00920 Dehydratase family MC28_1036 PF00291 Pyridoxal-phosphate dependent enzyme MC28_1036 PF00585 C-terminal regulatory domain of Threonine dehydratase MC28_1037 PF09587 Bacterial capsule synthesis protein PGA_cap MC28_1040 PF07690 Major Facilitator Superfamily MC28_1041 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase MC28_1043 PF01048 Phosphorylase superfamily MC28_1046 PF01979 Amidohydrolase family MC28_1047 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MC28_1049 PF13186 Iron-sulfur cluster-binding domain MC28_1049 PF04055 Radical SAM superfamily MC28_1050 PF13302 Acetyltransferase (GNAT) domain MC28_1051 PF00072 Response regulator receiver domain MC28_1051 PF00486 Transcriptional regulatory protein, C terminal MC28_1054 PF01566 Natural resistance-associated macrophage protein MC28_1057 PF02558 Ketopantoate reductase PanE/ApbA MC28_1057 PF08546 Ketopantoate reductase PanE/ApbA C terminal MC28_1059 PF13520 Amino acid permease MC28_1061 PF05791 Bacillus haemolytic enterotoxin (HBL) MC28_1062 PF05791 Bacillus haemolytic enterotoxin (HBL) MC28_1063 PF01810 LysE type translocator MC28_1064 PF04198 Putative sugar-binding domain MC28_1065 PF01791 DeoC/LacD family aldolase MC28_1066 PF07662 Na+ dependent nucleoside transporter C-terminus MC28_1066 PF01773 Na+ dependent nucleoside transporter N-terminus MC28_1067 PF00591 Glycosyl transferase family, a/b domain MC28_1067 PF02885 Glycosyl transferase family, helical bundle domain MC28_1067 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain MC28_1068 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MC28_1070 PF07301 Protein of unknown function (DUF1453) MC28_1071 PF05979 Bacterial protein of unknown function (DUF896) MC28_1074 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MC28_1074 PF03466 LysR substrate binding domain MC28_1077 PF00557 Metallopeptidase family M24 MC28_1077 PF05195 Aminopeptidase P, N-terminal domain MC28_1078 PF00394 Multicopper oxidase MC28_1078 PF07731 Multicopper oxidase MC28_1078 PF07732 Multicopper oxidase MC28_1079 PF05036 Sporulation related domain MC28_1079 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase MC28_1079 PF08239 Bacterial SH3 domain MC28_1080 PF12146 Serine aminopeptidase, S33 MC28_1080 PF13026 Protein of unknown function (DUF3887) MC28_1083 PF01609 Transposase DDE domain MC28_1088 PF01842 ACT domain MC28_1088 PF03315 Serine dehydratase beta chain MC28_1092 PF00005 ABC transporter MC28_1093 PF02687 FtsX-like permease family MC28_1094 PF00486 Transcriptional regulatory protein, C terminal MC28_1094 PF00072 Response regulator receiver domain MC28_1095 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_1097 PF02796 Helix-turn-helix domain of resolvase MC28_1097 PF00239 Resolvase, N terminal domain MC28_1098 PF00882 Zinc dependent phospholipase C MC28_1100 PF01098 Cell cycle protein MC28_1101 PF00571 CBS domain MC28_1101 PF03448 MgtE intracellular N domain MC28_1101 PF01769 Divalent cation transporter MC28_1105 PF13495 Phage integrase, N-terminal SAM-like domain MC28_1105 PF00589 Phage integrase family MC28_1106 PF00144 Beta-lactamase MC28_1107 PF13026 Protein of unknown function (DUF3887) MC28_1107 PF12146 Serine aminopeptidase, S33 MC28_1108 PF00072 Response regulator receiver domain MC28_1108 PF00196 Bacterial regulatory proteins, luxR family MC28_1115 PF03466 LysR substrate binding domain MC28_1115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MC28_1118 PF02525 Flavodoxin-like fold MC28_1119 PF05525 Branched-chain amino acid transport protein MC28_1121 PF05425 Copper resistance protein D MC28_1121 PF04234 CopC domain MC28_1121 PF13115 YtkA-like MC28_1122 PF07987 Domain of unkown function (DUF1775) MC28_1123 PF00892 EamA-like transporter family MC28_1124 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MC28_1124 PF03466 LysR substrate binding domain MC28_1125 PF02082 Transcriptional regulator MC28_1126 PF01323 DSBA-like thioredoxin domain MC28_1127 PF00881 Nitroreductase family MC28_1129 PF01425 Amidase MC28_1130 PF01594 AI-2E family transporter MC28_1133 PF00056 lactate/malate dehydrogenase, NAD binding domain MC28_1133 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain MC28_1134 PF01593 Flavin containing amine oxidoreductase MC28_1135 PF02492 CobW/HypB/UreG, nucleotide-binding domain MC28_1135 PF07683 Cobalamin synthesis protein cobW C-terminal domain MC28_1137 PF12399 Branched-chain amino acid ATP-binding cassette transporter MC28_1137 PF00005 ABC transporter MC28_1139 PF02653 Branched-chain amino acid transport system / permease component MC28_1141 PF03466 LysR substrate binding domain MC28_1141 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MC28_1145 PF01047 MarR family MC28_1147 PF01654 Cytochrome bd terminal oxidase subunit I MC28_1148 PF02322 Cytochrome bd terminal oxidase subunit II MC28_1151 PF00535 Glycosyl transferase family 2 MC28_1154 PF17676 LD-carboxypeptidase C-terminal domain MC28_1154 PF02016 LD-carboxypeptidase N-terminal domain MC28_1155 PF00768 D-alanyl-D-alanine carboxypeptidase MC28_1155 PF07943 Penicillin-binding protein 5, C-terminal domain MC28_1158 PF00877 NlpC/P60 family MC28_1158 PF01476 LysM domain MC28_1161 PF00486 Transcriptional regulatory protein, C terminal MC28_1161 PF00072 Response regulator receiver domain MC28_1162 PF00512 His Kinase A (phospho-acceptor) domain MC28_1162 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_1162 PF00989 PAS fold MC28_1162 PF16736 Single Cache-like MC28_1164 PF00106 short chain dehydrogenase MC28_1166 PF04439 Streptomycin adenylyltransferase MC28_1167 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain MC28_1167 PF01522 Polysaccharide deacetylase MC28_1168 PF13630 SdpI/YhfL protein family MC28_1171 PF01842 ACT domain MC28_1171 PF00742 Homoserine dehydrogenase MC28_1171 PF03447 Homoserine dehydrogenase, NAD binding domain MC28_1172 PF00291 Pyridoxal-phosphate dependent enzyme MC28_1176 PF03816 Cell envelope-related transcriptional attenuator domain MC28_1178 PF00072 Response regulator receiver domain MC28_1178 PF00486 Transcriptional regulatory protein, C terminal MC28_1179 PF00989 PAS fold MC28_1179 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_1179 PF00512 His Kinase A (phospho-acceptor) domain MC28_1179 PF16736 Single Cache-like MC28_1180 PF01522 Polysaccharide deacetylase MC28_1182 PF02308 MgtC family MC28_1183 PF00583 Acetyltransferase (GNAT) family MC28_1184 PF06276 Ferric iron reductase FhuF-like transporter MC28_1184 PF04183 IucA / IucC family MC28_1185 PF06276 Ferric iron reductase FhuF-like transporter MC28_1185 PF04183 IucA / IucC family MC28_1186 PF00501 AMP-binding enzyme MC28_1186 PF13193 AMP-binding enzyme C-terminal domain MC28_1189 PF01261 Xylose isomerase-like TIM barrel MC28_1190 PF00269 Small, acid-soluble spore proteins, alpha/beta type MC28_1191 PF07690 Major Facilitator Superfamily MC28_1192 PF01810 LysE type translocator MC28_1193 PF00392 Bacterial regulatory proteins, gntR family MC28_1193 PF00155 Aminotransferase class I and II MC28_1195 PF01734 Patatin-like phospholipase MC28_1200 PF00293 NUDIX domain MC28_1200 PF13344 Haloacid dehalogenase-like hydrolase MC28_1201 PF02540 NAD synthase MC28_1215 PF04860 Phage portal protein MC28_1222 PF02687 FtsX-like permease family MC28_1223 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin MC28_1223 PF18277 AbrB C-terminal domain MC28_1224 PF00082 Subtilase family MC28_1225 PF01022 Bacterial regulatory protein, arsR family MC28_1226 PF00248 Aldo/keto reductase family MC28_1230 PF03193 RsgA GTPase MC28_1231 PF00672 HAMP domain MC28_1231 PF02743 Cache domain MC28_1231 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MC28_1235 PF00210 Ferritin-like domain MC28_1238 PF00296 Luciferase-like monooxygenase MC28_1240 PF01593 Flavin containing amine oxidoreductase MC28_1241 PF13302 Acetyltransferase (GNAT) domain MC28_1242 PF00248 Aldo/keto reductase family MC28_1243 PF02492 CobW/HypB/UreG, nucleotide-binding domain MC28_1243 PF07683 Cobalamin synthesis protein cobW C-terminal domain MC28_1245 PF01297 Zinc-uptake complex component A periplasmic MC28_1248 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MC28_1249 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain MC28_1249 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain MC28_1251 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MC28_1254 PF00300 Histidine phosphatase superfamily (branch 1) MC28_1257 PF00293 NUDIX domain MC28_1258 PF09335 SNARE associated Golgi protein MC28_1259 PF01943 Polysaccharide biosynthesis protein MC28_1259 PF14667 Polysaccharide biosynthesis C-terminal domain MC28_1261 PF03773 Predicted permease MC28_1262 PF09323 Domain of unknown function (DUF1980) MC28_1263 PF03061 Thioesterase superfamily MC28_1264 PF13091 PLD-like domain MC28_1267 PF13460 NAD(P)H-binding MC28_1268 PF04306 Protein of unknown function (DUF456) MC28_1269 PF01595 Cyclin M transmembrane N-terminal domain MC28_1269 PF03471 Transporter associated domain MC28_1269 PF00571 CBS domain MC28_1274 PF05525 Branched-chain amino acid transport protein MC28_1275 PF01588 Putative tRNA binding domain MC28_1278 PF07454 Stage II sporulation protein P (SpoIIP) MC28_1280 PF02557 D-alanyl-D-alanine carboxypeptidase MC28_1282 PF01425 Amidase MC28_1283 PF07690 Major Facilitator Superfamily MC28_1285 PF01145 SPFH domain / Band 7 family MC28_1286 PF07454 Stage II sporulation protein P (SpoIIP) MC28_1289 PF01047 MarR family MC28_1290 PF07690 Major Facilitator Superfamily MC28_1291 PF00842 Alanine racemase, C-terminal domain MC28_1291 PF01168 Alanine racemase, N-terminal domain MC28_1294 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase MC28_1295 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) MC28_1295 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 MC28_1296 PF00155 Aminotransferase class I and II MC28_1296 PF00392 Bacterial regulatory proteins, gntR family MC28_1301 PF00583 Acetyltransferase (GNAT) family MC28_1304 PF06013 Proteins of 100 residues with WXG MC28_1307 PF08817 WXG100 protein secretion system (Wss), protein YukD MC28_1308 PF10140 WXG100 protein secretion system (Wss), protein YukC MC28_1309 PF01580 FtsK/SpoIIIE family MC28_1309 PF12538 DNA transporter MC28_1317 PF09579 Sporulation protein YtfJ (Spore_YtfJ) MC28_1322 PF08241 Methyltransferase domain MC28_1323 PF01268 Formate--tetrahydrofolate ligase MC28_1326 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MC28_1328 PF00107 Zinc-binding dehydrogenase MC28_1328 PF08240 Alcohol dehydrogenase GroES-like domain MC28_1333 PF01613 Flavin reductase like domain MC28_1333 PF00258 Flavodoxin MC28_1336 PF11992 Domain of unknown function (DUF3488) MC28_1336 PF13559 Domain of unknown function (DUF4129) MC28_1336 PF01841 Transglutaminase-like superfamily MC28_1337 PF01882 Protein of unknown function DUF58 MC28_1338 PF07726 ATPase family associated with various cellular activities (AAA) MC28_1338 PF17863 AAA lid domain MC28_1340 PF01568 Molydopterin dinucleotide binding domain MC28_1340 PF00384 Molybdopterin oxidoreductase MC28_1340 PF14710 Respiratory nitrate reductase alpha N-terminal MC28_1341 PF14711 Respiratory nitrate reductase beta C-terminal MC28_1341 PF13247 4Fe-4S dicluster domain MC28_1342 PF02613 Nitrate reductase delta subunit MC28_1343 PF02665 Nitrate reductase gamma subunit MC28_1344 PF00325 Bacterial regulatory proteins, crp family MC28_1344 PF00027 Cyclic nucleotide-binding domain MC28_1345 PF04055 Radical SAM superfamily MC28_1345 PF06463 Molybdenum Cofactor Synthesis C MC28_1346 PF00899 ThiF family MC28_1347 PF03453 MoeA N-terminal region (domain I and II) MC28_1347 PF03454 MoeA C-terminal region (domain IV) MC28_1347 PF00994 Probable molybdopterin binding domain MC28_1348 PF02391 MoaE protein MC28_1350 PF07690 Major Facilitator Superfamily MC28_1353 PF01903 CbiX MC28_1354 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MC28_1355 PF00355 Rieske [2Fe-2S] domain MC28_1356 PF07992 Pyridine nucleotide-disulphide oxidoreductase MC28_1356 PF04324 BFD-like [2Fe-2S] binding domain MC28_1356 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain MC28_1356 PF01077 Nitrite and sulphite reductase 4Fe-4S domain MC28_1356 PF18267 Rubredoxin NAD+ reductase C-terminal domain MC28_1357 PF04405 Domain of Unknown function (DUF542) MC28_1357 PF01814 Hemerythrin HHE cation binding domain MC28_1364 PF13302 Acetyltransferase (GNAT) domain MC28_1372 PF04232 Stage V sporulation protein S (SpoVS) MC28_1374 PF01966 HD domain MC28_1375 PF16326 ABC transporter C-terminal domain MC28_1375 PF12848 ABC transporter MC28_1375 PF00005 ABC transporter MC28_1381 PF08712 Scaffold protein Nfu/NifU N terminal MC28_1381 PF13769 Virulence factor MC28_1383 PF06491 Disulphide isomerase MC28_1384 PF04445 Putative SAM-dependent methyltransferase MC28_1385 PF03485 Arginyl tRNA synthetase N terminal domain MC28_1385 PF05746 DALR anticodon binding domain MC28_1385 PF00750 tRNA synthetases class I (R) MC28_1388 PF08264 Anticodon-binding domain of tRNA MC28_1388 PF00133 tRNA synthetases class I (I, L, M and V) MC28_1390 PF00440 Bacterial regulatory proteins, tetR family MC28_1393 PF01336 OB-fold nucleic acid binding domain MC28_1393 PF00152 tRNA synthetases class II (D, K and N) MC28_1394 PF00209 Sodium:neurotransmitter symporter family MC28_1395 PF00561 alpha/beta hydrolase fold MC28_1397 PF10997 Alternate to MurJ MC28_1398 PF13419 Haloacid dehalogenase-like hydrolase MC28_1400 PF00465 Iron-containing alcohol dehydrogenase MC28_1401 PF01177 Asp/Glu/Hydantoin racemase MC28_1402 PF01980 tRNA-methyltransferase O MC28_1403 PF00583 Acetyltransferase (GNAT) family MC28_1404 PF08645 Polynucleotide kinase 3 phosphatase MC28_1406 PF14005 YpjP-like protein MC28_1407 PF13419 Haloacid dehalogenase-like hydrolase MC28_1410 PF00144 Beta-lactamase MC28_1410 PF07930 D-aminopeptidase, domain B MC28_1411 PF00303 Thymidylate synthase MC28_1412 PF00186 Dihydrofolate reductase MC28_1414 PF05223 NTF2-like N-terminal transpeptidase domain MC28_1414 PF03717 Penicillin-binding Protein dimerisation domain MC28_1414 PF00905 Penicillin binding protein transpeptidase domain MC28_1415 PF02525 Flavodoxin-like fold MC28_1416 PF01553 Acyltransferase MC28_1417 PF03006 Haemolysin-III related MC28_1418 PF02416 mttA/Hcf106 family MC28_1419 PF00902 Sec-independent protein translocase protein (TatC) MC28_1421 PF02645 Uncharacterised protein, DegV family COG1307 MC28_1423 PF02630 SCO1/SenC MC28_1424 PF00011 Hsp20/alpha crystallin family MC28_1425 PF13537 Glutamine amidotransferase domain MC28_1425 PF00733 Asparagine synthase MC28_1428 PF01520 N-acetylmuramoyl-L-alanine amidase MC28_1428 PF05036 Sporulation related domain MC28_1429 PF01497 Periplasmic binding protein MC28_1430 PF01063 Amino-transferase class IV MC28_1431 PF00881 Nitroreductase family MC28_1433 PF00857 Isochorismatase family MC28_1434 PF00293 NUDIX domain MC28_1435 PF00924 Mechanosensitive ion channel MC28_1436 PF13185 GAF domain MC28_1436 PF07730 Histidine kinase MC28_1437 PF00196 Bacterial regulatory proteins, luxR family MC28_1437 PF00072 Response regulator receiver domain MC28_1438 PF01380 SIS domain MC28_1438 PF01418 Helix-turn-helix domain, rpiR family MC28_1439 PF00107 Zinc-binding dehydrogenase MC28_1439 PF08240 Alcohol dehydrogenase GroES-like domain MC28_1442 PF00144 Beta-lactamase MC28_1448 PF03358 NADPH-dependent FMN reductase MC28_1451 PF00005 ABC transporter MC28_1451 PF00571 CBS domain MC28_1452 PF00528 Binding-protein-dependent transport system inner membrane component MC28_1453 PF13520 Amino acid permease MC28_1459 PF01595 Cyclin M transmembrane N-terminal domain MC28_1459 PF00571 CBS domain MC28_1459 PF03471 Transporter associated domain MC28_1460 PF00171 Aldehyde dehydrogenase family MC28_1461 PF07997 Protein of unknown function (DUF1694) MC28_1462 PF09385 Histidine kinase N terminal MC28_1464 PF00202 Aminotransferase class-III MC28_1465 PF01144 Coenzyme A transferase MC28_1467 PF07687 Peptidase dimerisation domain MC28_1467 PF01546 Peptidase family M20/M25/M40 MC28_1468 PF00583 Acetyltransferase (GNAT) family MC28_1470 PF12544 Lysine-2,3-aminomutase MC28_1471 PF14122 YokU-like protein, putative antitoxin MC28_1472 PF06855 YozE SAM-like fold MC28_1475 PF14162 YozD-like protein MC28_1477 PF08239 Bacterial SH3 domain MC28_1477 PF00069 Protein kinase domain MC28_1479 PF01569 PAP2 superfamily MC28_1480 PF16916 Dimerisation domain of Zinc Transporter MC28_1480 PF01545 Cation efflux family MC28_1483 PF14659 Phage integrase, N-terminal SAM-like domain MC28_1483 PF00589 Phage integrase family MC28_1485 PF13614 AAA domain MC28_1492 PF01381 Helix-turn-helix MC28_1498 PF09588 YqaJ-like viral recombinase domain MC28_1499 PF03837 RecT family MC28_1530 PF01510 N-acetylmuramoyl-L-alanine amidase MC28_1530 PF13457 GW (Gly-Tryp) dipeptide domain MC28_1548 PF10676 Spore germination protein gerPA/gerPF MC28_1554 PF00905 Penicillin binding protein transpeptidase domain MC28_1554 PF00912 Transglycosylase MC28_1555 PF07690 Major Facilitator Superfamily MC28_1557 PF00285 Citrate synthase, C-terminal domain MC28_1558 PF03972 MmgE/PrpD family MC28_1560 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MC28_1560 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MC28_1560 PF02770 Acyl-CoA dehydrogenase, middle domain MC28_1561 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MC28_1561 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase MC28_1563 PF01810 LysE type translocator MC28_1564 PF00378 Enoyl-CoA hydratase/isomerase MC28_1566 PF10763 Protein of unknown function (DUF2584) MC28_1567 PF00149 Calcineurin-like phosphoesterase MC28_1567 PF12320 Type 5 capsule protein repressor C-terminal domain MC28_1568 PF13476 AAA domain MC28_1570 PF01022 Bacterial regulatory protein, arsR family MC28_1573 PF07690 Major Facilitator Superfamily MC28_1574 PF00106 short chain dehydrogenase MC28_1575 PF00425 chorismate binding enzyme MC28_1576 PF13193 AMP-binding enzyme C-terminal domain MC28_1576 PF00501 AMP-binding enzyme MC28_1577 PF00857 Isochorismatase family MC28_1577 PF00550 Phosphopantetheine attachment site MC28_1578 PF00501 AMP-binding enzyme MC28_1578 PF00975 Thioesterase domain MC28_1578 PF00550 Phosphopantetheine attachment site MC28_1578 PF00668 Condensation domain MC28_1578 PF13193 AMP-binding enzyme C-terminal domain MC28_1579 PF03621 MbtH-like protein MC28_1580 PF07690 Major Facilitator Superfamily MC28_1583 PF00216 Bacterial DNA-binding protein MC28_1585 PF05163 DinB family MC28_1586 PF00082 Subtilase family MC28_1587 PF01235 Sodium:alanine symporter family MC28_1589 PF16291 Domain of unknown function (DUF4937 MC28_1590 PF01479 S4 domain MC28_1590 PF00849 RNA pseudouridylate synthase MC28_1591 PF03129 Anticodon binding domain MC28_1591 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MC28_1591 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MC28_1591 PF02824 TGS domain MC28_1592 PF00005 ABC transporter MC28_1594 PF12146 Serine aminopeptidase, S33 MC28_1598 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MC28_1598 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MC28_1598 PF00205 Thiamine pyrophosphate enzyme, central domain MC28_1600 PF00753 Metallo-beta-lactamase superfamily MC28_1605 PF00027 Cyclic nucleotide-binding domain MC28_1607 PF12833 Helix-turn-helix domain MC28_1607 PF17853 GGDEF-like domain MC28_1610 PF05791 Bacillus haemolytic enterotoxin (HBL) MC28_1611 PF05791 Bacillus haemolytic enterotoxin (HBL) MC28_1613 PF01757 Acyltransferase family MC28_1616 PF00989 PAS fold MC28_1616 PF13426 PAS domain MC28_1616 PF13188 PAS domain MC28_1616 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_1616 PF00512 His Kinase A (phospho-acceptor) domain MC28_1618 PF00486 Transcriptional regulatory protein, C terminal MC28_1618 PF00072 Response regulator receiver domain MC28_1622 PF01047 MarR family MC28_1625 PF00440 Bacterial regulatory proteins, tetR family MC28_1626 PF03176 MMPL family MC28_1628 PF00302 Chloramphenicol acetyltransferase MC28_1630 PF00583 Acetyltransferase (GNAT) family MC28_1637 PF13302 Acetyltransferase (GNAT) domain MC28_1639 PF00313 'Cold-shock' DNA-binding domain MC28_1643 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MC28_1643 PF03466 LysR substrate binding domain MC28_1644 PF02774 Semialdehyde dehydrogenase, dimerisation domain MC28_1644 PF01118 Semialdehyde dehydrogenase, NAD binding domain MC28_1645 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MC28_1645 PF03466 LysR substrate binding domain MC28_1646 PF00202 Aminotransferase class-III MC28_1647 PF03473 MOSC domain MC28_1647 PF03475 3-alpha domain MC28_1652 PF01810 LysE type translocator MC28_1653 PF07883 Cupin domain MC28_1653 PF01381 Helix-turn-helix MC28_1661 PF00890 FAD binding domain MC28_1662 PF04542 Sigma-70 region 2 MC28_1662 PF08281 Sigma-70, region 4 MC28_1662 PF12680 SnoaL-like domain MC28_1664 PF01596 O-methyltransferase MC28_1667 PF02638 Glycosyl hydrolase-like 10 MC28_1669 PF02378 Phosphotransferase system, EIIC MC28_1671 PF01869 BadF/BadG/BcrA/BcrD ATPase family MC28_1672 PF02660 Glycerol-3-phosphate acyltransferase MC28_1673 PF00266 Aminotransferase class-V MC28_1677 PF00753 Metallo-beta-lactamase superfamily MC28_1677 PF16123 Hydroxyacylglutathione hydrolase C-terminus MC28_1680 PF00270 DEAD/DEAH box helicase MC28_1680 PF00271 Helicase conserved C-terminal domain MC28_1681 PF03848 Tellurite resistance protein TehB MC28_1681 PF09313 Domain of unknown function (DUF1971) MC28_1683 PF08241 Methyltransferase domain MC28_1684 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MC28_1684 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MC28_1684 PF00205 Thiamine pyrophosphate enzyme, central domain MC28_1686 PF00300 Histidine phosphatase superfamily (branch 1) MC28_1687 PF14171 Toxin SpoIISA, type II toxin-antitoxin system MC28_1691 PF07687 Peptidase dimerisation domain MC28_1691 PF01546 Peptidase family M20/M25/M40 MC28_1695 PF04371 Porphyromonas-type peptidyl-arginine deiminase MC28_1698 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin MC28_1698 PF18277 AbrB C-terminal domain MC28_1700 PF01925 Sulfite exporter TauE/SafE MC28_1701 PF00132 Bacterial transferase hexapeptide (six repeats) MC28_1702 PF00768 D-alanyl-D-alanine carboxypeptidase MC28_1702 PF07943 Penicillin-binding protein 5, C-terminal domain MC28_1706 PF00905 Penicillin binding protein transpeptidase domain MC28_1706 PF03717 Penicillin-binding Protein dimerisation domain MC28_1706 PF05223 NTF2-like N-terminal transpeptidase domain MC28_1707 PF08281 Sigma-70, region 4 MC28_1707 PF04542 Sigma-70 region 2 MC28_1714 PF05791 Bacillus haemolytic enterotoxin (HBL) MC28_1718 PF03323 Bacillus/Clostridium GerA spore germination protein MC28_1720 PF18416 N-acetylglucosamine binding protein domain 2 MC28_1720 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading MC28_1721 PF00388 Phosphatidylinositol-specific phospholipase C, X domain MC28_1723 PF00149 Calcineurin-like phosphoesterase MC28_1725 PF00005 ABC transporter MC28_1727 PF08359 YsiA-like protein, C-terminal region MC28_1727 PF00440 Bacterial regulatory proteins, tetR family MC28_1729 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MC28_1729 PF02770 Acyl-CoA dehydrogenase, middle domain MC28_1729 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MC28_1731 PF00364 Biotin-requiring enzyme MC28_1733 PF00378 Enoyl-CoA hydratase/isomerase MC28_1734 PF01039 Carboxyl transferase domain MC28_1735 PF16177 Acetyl-coenzyme A synthetase N-terminus MC28_1735 PF13193 AMP-binding enzyme C-terminal domain MC28_1735 PF00501 AMP-binding enzyme MC28_1747 PF00485 Phosphoribulokinase / Uridine kinase family MC28_1749 PF05163 DinB family MC28_1750 PF00768 D-alanyl-D-alanine carboxypeptidase MC28_1750 PF07943 Penicillin-binding protein 5, C-terminal domain MC28_1751 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_1751 PF00512 His Kinase A (phospho-acceptor) domain MC28_1752 PF00072 Response regulator receiver domain MC28_1752 PF00486 Transcriptional regulatory protein, C terminal MC28_1754 PF01966 HD domain MC28_1755 PF13021 Domain of unknown function (DUF3885) MC28_1756 PF01048 Phosphorylase superfamily MC28_1759 PF03413 Peptidase propeptide and YPEB domain MC28_1759 PF07504 Fungalysin/Thermolysin Propeptide Motif MC28_1759 PF01447 Thermolysin metallopeptidase, catalytic domain MC28_1759 PF02868 Thermolysin metallopeptidase, alpha-helical domain MC28_1760 PF17853 GGDEF-like domain MC28_1760 PF12833 Helix-turn-helix domain MC28_1767 PF17760 UvrA interaction domain MC28_1767 PF17755 UvrA DNA-binding domain MC28_1767 PF00005 ABC transporter MC28_1770 PF00144 Beta-lactamase MC28_1773 PF01638 HxlR-like helix-turn-helix MC28_1774 PF13847 Methyltransferase domain MC28_1778 PF14525 AraC-binding-like domain MC28_1778 PF12833 Helix-turn-helix domain MC28_1780 PF00892 EamA-like transporter family MC28_1781 PF00155 Aminotransferase class I and II MC28_1781 PF00392 Bacterial regulatory proteins, gntR family MC28_1787 PF01965 DJ-1/PfpI family MC28_1789 PF08450 SMP-30/Gluconolactonase/LRE-like region MC28_1790 PF01921 tRNA synthetases class I (K) MC28_1791 PF07486 Cell Wall Hydrolase MC28_1793 PF00486 Transcriptional regulatory protein, C terminal MC28_1793 PF00072 Response regulator receiver domain MC28_1794 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_1797 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MC28_1797 PF03466 LysR substrate binding domain MC28_1798 PF00248 Aldo/keto reductase family MC28_1801 PF00005 ABC transporter MC28_1802 PF02687 FtsX-like permease family MC28_1806 PF00742 Homoserine dehydrogenase MC28_1806 PF03447 Homoserine dehydrogenase, NAD binding domain MC28_1806 PF01842 ACT domain MC28_1807 PF00392 Bacterial regulatory proteins, gntR family MC28_1807 PF00155 Aminotransferase class I and II MC28_1808 PF07478 D-ala D-ala ligase C-terminus MC28_1808 PF01820 D-ala D-ala ligase N-terminus MC28_1809 PF03070 TENA/THI-4/PQQC family MC28_1830 PF00067 Cytochrome P450 MC28_1832 PF00132 Bacterial transferase hexapeptide (six repeats) MC28_1833 PF07561 Domain of Unknown Function (DUF1540) MC28_1835 PF00067 Cytochrome P450 MC28_1838 PF00989 PAS fold MC28_1838 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_1838 PF13188 PAS domain MC28_1838 PF13426 PAS domain MC28_1838 PF00512 His Kinase A (phospho-acceptor) domain MC28_1840 PF10502 Signal peptidase, peptidase S26 MC28_1841 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase MC28_1842 PF01177 Asp/Glu/Hydantoin racemase MC28_1843 PF07155 ECF-type riboflavin transporter, S component MC28_1844 PF00005 ABC transporter MC28_1844 PF12558 ATP-binding cassette cobalt transporter MC28_1846 PF09680 Family of unknown function MC28_1847 PF00512 His Kinase A (phospho-acceptor) domain MC28_1847 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_1850 PF08240 Alcohol dehydrogenase GroES-like domain MC28_1850 PF00107 Zinc-binding dehydrogenase MC28_1851 PF01569 PAP2 superfamily MC28_1863 PF13411 MerR HTH family regulatory protein MC28_1863 PF07739 TipAS antibiotic-recognition domain MC28_1864 PF05977 Transmembrane secretion effector MC28_1868 PF03009 Glycerophosphoryl diester phosphodiesterase family MC28_1872 PF00155 Aminotransferase class I and II MC28_1872 PF00392 Bacterial regulatory proteins, gntR family MC28_1873 PF00892 EamA-like transporter family MC28_1874 PF01270 Glycosyl hydrolases family 8 MC28_1875 PF01156 Inosine-uridine preferring nucleoside hydrolase MC28_1877 PF13344 Haloacid dehalogenase-like hydrolase MC28_1877 PF00293 NUDIX domain MC28_1881 PF07690 Major Facilitator Superfamily MC28_1883 PF00293 NUDIX domain MC28_1883 PF09297 NADH pyrophosphatase zinc ribbon domain MC28_1884 PF02768 DNA polymerase III beta subunit, C-terminal domain MC28_1884 PF00712 DNA polymerase III beta subunit, N-terminal domain MC28_1884 PF02767 DNA polymerase III beta subunit, central domain MC28_1887 PF12706 Beta-lactamase superfamily domain MC28_1892 PF09234 Domain of unknown function (DUF1963) MC28_1897 PF01734 Patatin-like phospholipase MC28_1898 PF08000 Bacterial PH domain MC28_1900 PF12867 DinB superfamily MC28_1903 PF02673 Bacitracin resistance protein BacA MC28_1905 PF01541 GIY-YIG catalytic domain MC28_1911 PF01266 FAD dependent oxidoreductase MC28_1918 PF00072 Response regulator receiver domain MC28_1918 PF00486 Transcriptional regulatory protein, C terminal MC28_1919 PF00512 His Kinase A (phospho-acceptor) domain MC28_1919 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_1919 PF16736 Single Cache-like MC28_1919 PF00989 PAS fold MC28_1924 PF00005 ABC transporter MC28_1925 PF12704 MacB-like periplasmic core domain MC28_1925 PF02687 FtsX-like permease family MC28_1928 PF07859 alpha/beta hydrolase fold MC28_1929 PF00128 Alpha amylase, catalytic domain MC28_1929 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) MC28_1929 PF03714 Bacterial pullanase-associated domain MC28_1930 PF07504 Fungalysin/Thermolysin Propeptide Motif MC28_1930 PF03413 Peptidase propeptide and YPEB domain MC28_1930 PF01447 Thermolysin metallopeptidase, catalytic domain MC28_1930 PF02868 Thermolysin metallopeptidase, alpha-helical domain MC28_1931 PF00149 Calcineurin-like phosphoesterase MC28_1931 PF02872 5'-nucleotidase, C-terminal domain MC28_1934 PF00344 SecY translocase MC28_1935 PF00892 EamA-like transporter family MC28_1936 PF00392 Bacterial regulatory proteins, gntR family MC28_1936 PF00155 Aminotransferase class I and II MC28_1937 PF08240 Alcohol dehydrogenase GroES-like domain MC28_1937 PF00107 Zinc-binding dehydrogenase MC28_1938 PF00561 alpha/beta hydrolase fold MC28_1945 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) MC28_1946 PF14620 YpeB sporulation MC28_1946 PF03413 Peptidase propeptide and YPEB domain MC28_1947 PF01471 Putative peptidoglycan binding domain MC28_1947 PF07486 Cell Wall Hydrolase MC28_1951 PF03301 Tryptophan 2,3-dioxygenase MC28_1952 PF04199 Putative cyclase MC28_1953 PF00266 Aminotransferase class-V MC28_1954 PF00440 Bacterial regulatory proteins, tetR family MC28_1954 PF08359 YsiA-like protein, C-terminal region MC28_1956 PF00158 Sigma-54 interaction domain MC28_1956 PF02954 Bacterial regulatory protein, Fis family MC28_1956 PF01590 GAF domain MC28_1959 PF13302 Acetyltransferase (GNAT) domain MC28_1960 PF08220 DeoR-like helix-turn-helix domain MC28_1960 PF00455 DeoR C terminal sensor domain MC28_1964 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MC28_1964 PF07992 Pyridine nucleotide-disulphide oxidoreductase MC28_1965 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) MC28_1965 PF02817 e3 binding domain MC28_1965 PF00364 Biotin-requiring enzyme MC28_1966 PF02780 Transketolase, C-terminal domain MC28_1966 PF02779 Transketolase, pyrimidine binding domain MC28_1969 PF00106 short chain dehydrogenase MC28_1970 PF13789 Domain of unknown function (DUF4181) MC28_1975 PF00528 Binding-protein-dependent transport system inner membrane component MC28_1976 PF00571 CBS domain MC28_1976 PF00005 ABC transporter MC28_1977 PF04069 Substrate binding domain of ABC-type glycine betaine transport system MC28_1978 PF00574 Clp protease MC28_1981 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) MC28_1982 PF13673 Acetyltransferase (GNAT) domain MC28_1985 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading MC28_1985 PF18416 N-acetylglucosamine binding protein domain 2 MC28_1987 PF00201 UDP-glucoronosyl and UDP-glucosyl transferase MC28_1988 PF03781 Sulfatase-modifying factor enzyme 1 MC28_1991 PF10990 Protein of unknown function (DUF2809) MC28_1993 PF04237 YjbR MC28_2003 PF13538 UvrD-like helicase C-terminal domain MC28_2004 PF06094 Gamma-glutamyl cyclotransferase, AIG2-like MC28_2005 PF09382 RQC domain MC28_2005 PF16124 RecQ zinc-binding MC28_2005 PF00271 Helicase conserved C-terminal domain MC28_2005 PF00270 DEAD/DEAH box helicase MC28_2005 PF00570 HRDC domain MC28_2012 PF02833 DHHA2 domain MC28_2012 PF01368 DHH family MC28_2013 PF03067 Lytic polysaccharide mono-oxygenase, cellulose-degrading MC28_2013 PF18416 N-acetylglucosamine binding protein domain 2 MC28_2014 PF05163 DinB family MC28_2018 PF02627 Carboxymuconolactone decarboxylase family MC28_2019 PF01235 Sodium:alanine symporter family MC28_2020 PF00171 Aldehyde dehydrogenase family MC28_2021 PF00701 Dihydrodipicolinate synthetase family MC28_2022 PF05544 Proline racemase MC28_2023 PF05544 Proline racemase MC28_2024 PF01266 FAD dependent oxidoreductase MC28_2025 PF00158 Sigma-54 interaction domain MC28_2025 PF13188 PAS domain MC28_2025 PF02954 Bacterial regulatory protein, Fis family MC28_2026 PF07992 Pyridine nucleotide-disulphide oxidoreductase MC28_2026 PF04324 BFD-like [2Fe-2S] binding domain MC28_2028 PF04324 BFD-like [2Fe-2S] binding domain MC28_2028 PF07992 Pyridine nucleotide-disulphide oxidoreductase MC28_2031 PF08876 Domain of unknown function (DUF1836) MC28_2033 PF01636 Phosphotransferase enzyme family MC28_2034 PF01966 HD domain MC28_2035 PF09335 SNARE associated Golgi protein MC28_2036 PF04914 DltD protein MC28_2037 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MC28_2038 PF18348 Bacterial dipeptidyl-peptidase Sh3 domain MC28_2038 PF00877 NlpC/P60 family MC28_2039 PF13378 Enolase C-terminal domain-like MC28_2039 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MC28_2048 PF08530 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain MC28_2048 PF02129 X-Pro dipeptidyl-peptidase (S15 family) MC28_2049 PF00672 HAMP domain MC28_2049 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_2049 PF00512 His Kinase A (phospho-acceptor) domain MC28_2050 PF00486 Transcriptional regulatory protein, C terminal MC28_2050 PF00072 Response regulator receiver domain MC28_2054 PF13419 Haloacid dehalogenase-like hydrolase MC28_2055 PF08439 Oligopeptidase F MC28_2055 PF01432 Peptidase family M3 MC28_2056 PF00583 Acetyltransferase (GNAT) family MC28_2057 PF02645 Uncharacterised protein, DegV family COG1307 MC28_2067 PF07690 Major Facilitator Superfamily MC28_2069 PF04519 Polymer-forming cytoskeletal MC28_2070 PF13171 Protein of unknown function (DUF4004) MC28_2071 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MC28_2071 PF12793 Sugar transport-related sRNA regulator N-term MC28_2072 PF07690 Major Facilitator Superfamily MC28_2077 PF04226 Transglycosylase associated protein MC28_2080 PF08241 Methyltransferase domain MC28_2087 PF00155 Aminotransferase class I and II MC28_2088 PF07977 FabA-like domain MC28_2089 PF03630 Fumble MC28_2093 PF00005 ABC transporter MC28_2102 PF01594 AI-2E family transporter MC28_2104 PF00296 Luciferase-like monooxygenase MC28_2105 PF00528 Binding-protein-dependent transport system inner membrane component MC28_2106 PF09084 NMT1/THI5 like MC28_2107 PF00005 ABC transporter MC28_2112 PF02522 Aminoglycoside 3-N-acetyltransferase MC28_2118 PF13536 Putative multidrug resistance efflux transporter MC28_2119 PF12867 DinB superfamily MC28_2125 PF00291 Pyridoxal-phosphate dependent enzyme MC28_2126 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MC28_2128 PF01965 DJ-1/PfpI family MC28_2129 PF01522 Polysaccharide deacetylase MC28_2132 PF07690 Major Facilitator Superfamily MC28_2133 PF03741 Integral membrane protein TerC family MC28_2134 PF00884 Sulfatase MC28_2135 PF00005 ABC transporter MC28_2135 PF12848 ABC transporter MC28_2136 PF03176 MMPL family MC28_2137 PF00440 Bacterial regulatory proteins, tetR family MC28_2137 PF16295 Tetracyclin repressor-like, C-terminal domain MC28_2139 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) MC28_2140 PF02153 Prephenate dehydrogenase MC28_2140 PF01842 ACT domain MC28_2141 PF00155 Aminotransferase class I and II MC28_2142 PF01264 Chorismate synthase MC28_2143 PF00793 DAHP synthetase I family MC28_2143 PF01817 Chorismate mutase type II MC28_2147 PF01636 Phosphotransferase enzyme family MC28_2151 PF01476 LysM domain MC28_2151 PF06725 3D domain MC28_2153 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MC28_2154 PF13673 Acetyltransferase (GNAT) domain MC28_2154 PF13302 Acetyltransferase (GNAT) domain MC28_2154 PF00958 GMP synthase C terminal domain MC28_2154 PF03352 Methyladenine glycosylase MC28_2154 PF00117 Glutamine amidotransferase class-I MC28_2155 PF03358 NADPH-dependent FMN reductase MC28_2158 PF06039 Malate:quinone oxidoreductase (Mqo) MC28_2159 PF13407 Periplasmic binding protein domain MC28_2162 PF02653 Branched-chain amino acid transport system / permease component MC28_2163 PF00005 ABC transporter MC28_2164 PF04198 Putative sugar-binding domain MC28_2164 PF00325 Bacterial regulatory proteins, crp family MC28_2165 PF02782 FGGY family of carbohydrate kinases, C-terminal domain MC28_2165 PF00370 FGGY family of carbohydrate kinases, N-terminal domain MC28_2167 PF01791 DeoC/LacD family aldolase MC28_2172 PF03992 Antibiotic biosynthesis monooxygenase MC28_2177 PF12833 Helix-turn-helix domain MC28_2177 PF17853 GGDEF-like domain MC28_2178 PF07662 Na+ dependent nucleoside transporter C-terminus MC28_2178 PF01773 Na+ dependent nucleoside transporter N-terminus MC28_2181 PF14748 Pyrroline-5-carboxylate reductase dimerisation MC28_2181 PF03807 NADP oxidoreductase coenzyme F420-dependent MC28_2182 PF01546 Peptidase family M20/M25/M40 MC28_2183 PF09339 IclR helix-turn-helix domain MC28_2183 PF01614 Bacterial transcriptional regulator MC28_2185 PF00324 Amino acid permease MC28_2187 PF00487 Fatty acid desaturase MC28_2189 PF00245 Alkaline phosphatase MC28_2190 PF11188 Protein of unknown function (DUF2975) MC28_2191 PF13443 Cro/C1-type HTH DNA-binding domain MC28_2196 PF13302 Acetyltransferase (GNAT) domain MC28_2197 PF12681 Glyoxalase-like domain MC28_2201 PF17863 AAA lid domain MC28_2201 PF07726 ATPase family associated with various cellular activities (AAA) MC28_2204 PF07690 Major Facilitator Superfamily MC28_2205 PF00202 Aminotransferase class-III MC28_2206 PF06628 Catalase-related immune-responsive MC28_2206 PF00199 Catalase MC28_2207 PF18496 Collagenase G catalytic helper subdomain MC28_2207 PF04151 Bacterial pre-peptidase C-terminal domain MC28_2207 PF01752 Collagenase MC28_2207 PF08453 Peptidase family M9 N-terminal MC28_2209 PF13382 Adenine deaminase C-terminal domain MC28_2209 PF01979 Amidohydrolase family MC28_2210 PF00144 Beta-lactamase MC28_2214 PF07726 ATPase family associated with various cellular activities (AAA) MC28_2214 PF17863 AAA lid domain MC28_2216 PF09346 SMI1 / KNR4 family (SUKH-1) MC28_2217 PF15652 HNH/Endo VII superfamily toxin with a SHH signature MC28_2217 PF04740 LXG domain of WXG superfamily MC28_2219 PF14436 Bacterial EndoU nuclease MC28_2219 PF04740 LXG domain of WXG superfamily MC28_2224 PF00881 Nitroreductase family MC28_2225 PF01047 MarR family MC28_2226 PF00009 Elongation factor Tu GTP binding domain MC28_2226 PF00679 Elongation factor G C-terminus MC28_2226 PF03764 Elongation factor G, domain IV MC28_2226 PF14492 Elongation Factor G, domain II MC28_2228 PF00293 NUDIX domain MC28_2229 PF05139 Erythromycin esterase MC28_2230 PF16363 GDP-mannose 4,6 dehydratase MC28_2233 PF12833 Helix-turn-helix domain MC28_2233 PF02311 AraC-like ligand binding domain MC28_2234 PF00583 Acetyltransferase (GNAT) family MC28_2237 PF00892 EamA-like transporter family MC28_2238 PF00392 Bacterial regulatory proteins, gntR family MC28_2238 PF00155 Aminotransferase class I and II MC28_2240 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 MC28_2241 PF13031 Protein of unknown function (DUF3892) MC28_2242 PF00672 HAMP domain MC28_2242 PF00512 His Kinase A (phospho-acceptor) domain MC28_2243 PF00486 Transcriptional regulatory protein, C terminal MC28_2243 PF00072 Response regulator receiver domain MC28_2244 PF00561 alpha/beta hydrolase fold MC28_2250 PF01925 Sulfite exporter TauE/SafE MC28_2252 PF00324 Amino acid permease MC28_2254 PF08713 DNA alkylation repair enzyme MC28_2255 PF10898 Protein of unknown function (DUF2716) MC28_2257 PF00293 NUDIX domain MC28_2259 PF04989 Cephalosporin hydroxylase MC28_2260 PF10502 Signal peptidase, peptidase S26 MC28_2262 PF02146 Sir2 family MC28_2263 PF01470 Pyroglutamyl peptidase MC28_2266 PF03746 LamB/YcsF family MC28_2267 PF02626 Carboxyltransferase domain, subdomain A and B MC28_2269 PF09339 IclR helix-turn-helix domain MC28_2269 PF01614 Bacterial transcriptional regulator MC28_2272 PF10502 Signal peptidase, peptidase S26 MC28_2273 PF03932 CutC family MC28_2276 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MC28_2276 PF08028 Acyl-CoA dehydrogenase, C-terminal domain MC28_2276 PF02770 Acyl-CoA dehydrogenase, middle domain MC28_2280 PF07859 alpha/beta hydrolase fold MC28_2285 PF10903 Protein of unknown function (DUF2691) MC28_2288 PF00440 Bacterial regulatory proteins, tetR family MC28_2289 PF05547 Immune inhibitor A peptidase M6 MC28_2290 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain MC28_2290 PF00391 PEP-utilising enzyme, mobile domain MC28_2293 PF11798 IMS family HHH motif MC28_2293 PF11799 impB/mucB/samB family C-terminal domain MC28_2293 PF00817 impB/mucB/samB family MC28_2298 PF00149 Calcineurin-like phosphoesterase MC28_2298 PF17936 Bacterial Ig domain MC28_2298 PF02872 5'-nucleotidase, C-terminal domain MC28_2299 PF00561 alpha/beta hydrolase fold MC28_2300 PF00857 Isochorismatase family MC28_2303 PF01979 Amidohydrolase family MC28_2304 PF03466 LysR substrate binding domain MC28_2304 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MC28_2305 PF01544 CorA-like Mg2+ transporter protein MC28_2312 PF03073 TspO/MBR family MC28_2313 PF00875 DNA photolyase MC28_2313 PF03441 FAD binding domain of DNA photolyase MC28_2315 PF10070 Uncharacterized protein conserved in bacteria (DUF2309) MC28_2319 PF05504 Spore germination B3/ GerAC like, C-terminal MC28_2320 PF03323 Bacillus/Clostridium GerA spore germination protein MC28_2322 PF01040 UbiA prenyltransferase family MC28_2327 PF01451 Low molecular weight phosphotyrosine protein phosphatase MC28_2328 PF01758 Sodium Bile acid symporter family MC28_2329 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MC28_2330 PF01022 Bacterial regulatory protein, arsR family MC28_2335 PF18665 Tetracyclin repressor-like, C-terminal domain MC28_2335 PF00440 Bacterial regulatory proteins, tetR family MC28_2337 PF00392 Bacterial regulatory proteins, gntR family MC28_2337 PF07840 FadR C-terminal domain MC28_2340 PF03845 Spore germination protein MC28_2341 PF03323 Bacillus/Clostridium GerA spore germination protein MC28_2342 PF07690 Major Facilitator Superfamily MC28_2344 PF01037 Lrp/AsnC ligand binding domain MC28_2347 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MC28_2349 PF08803 Putative mono-oxygenase ydhR MC28_2351 PF12802 MarR family MC28_2359 PF00667 FAD binding domain MC28_2359 PF00258 Flavodoxin MC28_2359 PF00067 Cytochrome P450 MC28_2359 PF00175 Oxidoreductase NAD-binding domain MC28_2360 PF02567 Phenazine biosynthesis-like protein MC28_2362 PF07690 Major Facilitator Superfamily MC28_2363 PF00291 Pyridoxal-phosphate dependent enzyme MC28_2365 PF00144 Beta-lactamase MC28_2368 PF00753 Metallo-beta-lactamase superfamily MC28_2369 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family MC28_2371 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III MC28_2371 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal MC28_2375 PF04072 Leucine carboxyl methyltransferase MC28_2378 PF00005 ABC transporter MC28_2379 PF02687 FtsX-like permease family MC28_2382 PF00672 HAMP domain MC28_2382 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_2382 PF00512 His Kinase A (phospho-acceptor) domain MC28_2383 PF00072 Response regulator receiver domain MC28_2383 PF00486 Transcriptional regulatory protein, C terminal MC28_2384 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) MC28_2384 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 MC28_2386 PF17676 LD-carboxypeptidase C-terminal domain MC28_2386 PF02016 LD-carboxypeptidase N-terminal domain MC28_2390 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MC28_2390 PF01842 ACT domain MC28_2390 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MC28_2391 PF00266 Aminotransferase class-V MC28_2397 PF01804 Penicillin amidase MC28_2400 PF07690 Major Facilitator Superfamily MC28_2405 PF04740 LXG domain of WXG superfamily MC28_2412 PF02557 D-alanyl-D-alanine carboxypeptidase MC28_2413 PF09587 Bacterial capsule synthesis protein PGA_cap MC28_2414 PF07969 Amidohydrolase family MC28_2415 PF00202 Aminotransferase class-III MC28_2418 PF01554 MatE MC28_2422 PF14044 NETI protein MC28_2423 PF07690 Major Facilitator Superfamily MC28_2425 PF12697 Alpha/beta hydrolase family MC28_2426 PF01047 MarR family MC28_2427 PF07690 Major Facilitator Superfamily MC28_2434 PF00512 His Kinase A (phospho-acceptor) domain MC28_2434 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_2435 PF00072 Response regulator receiver domain MC28_2435 PF00486 Transcriptional regulatory protein, C terminal MC28_2437 PF17440 Thiol-activated cytolysin beta sandwich domain MC28_2437 PF01289 Thiol-activated cytolysin MC28_2439 PF02667 Short chain fatty acid transporter MC28_2441 PF02525 Flavodoxin-like fold MC28_2445 PF14256 YwiC-like protein MC28_2447 PF00005 ABC transporter MC28_2452 PF03606 C4-dicarboxylate anaerobic carrier MC28_2453 PF04231 Endonuclease I MC28_2455 PF01048 Phosphorylase superfamily MC28_2456 PF04073 Aminoacyl-tRNA editing domain MC28_2460 PF01638 HxlR-like helix-turn-helix MC28_2461 PF00881 Nitroreductase family MC28_2475 PF13419 Haloacid dehalogenase-like hydrolase MC28_2480 PF13344 Haloacid dehalogenase-like hydrolase MC28_2480 PF00293 NUDIX domain MC28_2482 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MC28_2483 PF00480 ROK family MC28_2484 PF07690 Major Facilitator Superfamily MC28_2485 PF12464 Maltose acetyltransferase MC28_2485 PF14602 Hexapeptide repeat of succinyl-transferase MC28_2486 PF00579 tRNA synthetases class I (W and Y) MC28_2487 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase MC28_2487 PF13288 DXP reductoisomerase C-terminal domain MC28_2487 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain MC28_2488 PF01594 AI-2E family transporter MC28_2494 PF07690 Major Facilitator Superfamily MC28_2499 PF03471 Transporter associated domain MC28_2499 PF01595 Cyclin M transmembrane N-terminal domain MC28_2499 PF00571 CBS domain MC28_2500 PF13411 MerR HTH family regulatory protein MC28_2503 PF16363 GDP-mannose 4,6 dehydratase MC28_2504 PF08421 Putative zinc binding domain MC28_2504 PF08484 C-methyltransferase C-terminal domain MC28_2506 PF00892 EamA-like transporter family MC28_2507 PF00805 Pentapeptide repeats (8 copies) MC28_2509 PF10282 Lactonase, 7-bladed beta-propeller MC28_2510 PF02782 FGGY family of carbohydrate kinases, C-terminal domain MC28_2510 PF00370 FGGY family of carbohydrate kinases, N-terminal domain MC28_2511 PF02447 GntP family permease MC28_2512 PF00923 Transaldolase/Fructose-6-phosphate aldolase MC28_2513 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MC28_2513 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain MC28_2514 PF02779 Transketolase, pyrimidine binding domain MC28_2514 PF02780 Transketolase, C-terminal domain MC28_2514 PF00456 Transketolase, thiamine diphosphate binding domain MC28_2515 PF00479 Glucose-6-phosphate dehydrogenase, NAD binding domain MC28_2515 PF02781 Glucose-6-phosphate dehydrogenase, C-terminal domain MC28_2517 PF08240 Alcohol dehydrogenase GroES-like domain MC28_2517 PF00107 Zinc-binding dehydrogenase MC28_2518 PF00296 Luciferase-like monooxygenase MC28_2519 PF16197 Ketoacyl-synthetase C-terminal extension MC28_2519 PF00107 Zinc-binding dehydrogenase MC28_2519 PF00550 Phosphopantetheine attachment site MC28_2519 PF08240 Alcohol dehydrogenase GroES-like domain MC28_2519 PF14765 Polyketide synthase dehydratase MC28_2519 PF08659 KR domain MC28_2519 PF00109 Beta-ketoacyl synthase, N-terminal domain MC28_2519 PF00698 Acyl transferase domain MC28_2519 PF02801 Beta-ketoacyl synthase, C-terminal domain MC28_2521 PF00106 short chain dehydrogenase MC28_2522 PF03413 Peptidase propeptide and YPEB domain MC28_2522 PF02868 Thermolysin metallopeptidase, alpha-helical domain MC28_2522 PF01447 Thermolysin metallopeptidase, catalytic domain MC28_2522 PF07504 Fungalysin/Thermolysin Propeptide Motif MC28_2524 PF00672 HAMP domain MC28_2524 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MC28_2524 PF12729 Four helix bundle sensory module for signal transduction MC28_2525 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) MC28_2526 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MC28_2526 PF01872 RibD C-terminal domain MC28_2527 PF00925 GTP cyclohydrolase II MC28_2528 PF01638 HxlR-like helix-turn-helix MC28_2531 PF00248 Aldo/keto reductase family MC28_2532 PF07690 Major Facilitator Superfamily MC28_2534 PF03928 Haem-degrading MC28_2536 PF01047 MarR family MC28_2537 PF03831 PhnA domain MC28_2537 PF08274 PhnA Zinc-Ribbon MC28_2538 PF01740 STAS domain MC28_2538 PF00916 Sulfate permease family MC28_2542 PF13443 Cro/C1-type HTH DNA-binding domain MC28_2543 PF11188 Protein of unknown function (DUF2975) MC28_2548 PF03960 ArsC family MC28_2549 PF01638 HxlR-like helix-turn-helix MC28_2550 PF07702 UTRA domain MC28_2550 PF00392 Bacterial regulatory proteins, gntR family MC28_2551 PF01408 Oxidoreductase family, NAD-binding Rossmann fold MC28_2551 PF02894 Oxidoreductase family, C-terminal alpha/beta domain MC28_2555 PF01638 HxlR-like helix-turn-helix MC28_2559 PF13472 GDSL-like Lipase/Acylhydrolase family MC28_2565 PF02567 Phenazine biosynthesis-like protein MC28_2569 PF13193 AMP-binding enzyme C-terminal domain MC28_2569 PF00501 AMP-binding enzyme MC28_2570 PF02525 Flavodoxin-like fold MC28_2571 PF01638 HxlR-like helix-turn-helix MC28_2573 PF01022 Bacterial regulatory protein, arsR family MC28_2574 PF18627 Peptidoglycan GlcNAc deacetylase N-terminal domain MC28_2574 PF01522 Polysaccharide deacetylase MC28_2575 PF12791 Anti-sigma factor N-terminus MC28_2576 PF04542 Sigma-70 region 2 MC28_2577 PF00535 Glycosyl transferase family 2 MC28_2577 PF18674 TarS beta-glycosyltransferase C-terminal domain 1 MC28_2578 PF01810 LysE type translocator MC28_2583 PF01061 ABC-2 type transporter MC28_2584 PF00005 ABC transporter MC28_2584 PF13732 Domain of unknown function (DUF4162) MC28_2588 PF00753 Metallo-beta-lactamase superfamily MC28_2589 PF01471 Putative peptidoglycan binding domain MC28_2589 PF01183 Glycosyl hydrolases family 25 MC28_2602 PF00753 Metallo-beta-lactamase superfamily MC28_2603 PF08240 Alcohol dehydrogenase GroES-like domain MC28_2603 PF00107 Zinc-binding dehydrogenase MC28_2604 PF00324 Amino acid permease MC28_2605 PF00583 Acetyltransferase (GNAT) family MC28_2605 PF13508 Acetyltransferase (GNAT) domain MC28_2606 PF07690 Major Facilitator Superfamily MC28_2616 PF02585 GlcNAc-PI de-N-acetylase MC28_2617 PF08830 Protein of unknown function (DUF1806) MC28_2618 PF03600 Citrate transporter MC28_2620 PF00583 Acetyltransferase (GNAT) family MC28_2621 PF01497 Periplasmic binding protein MC28_2622 PF01032 FecCD transport family MC28_2623 PF01032 FecCD transport family MC28_2624 PF05675 Protein of unknown function (DUF817) MC28_2625 PF13170 Protein of unknown function (DUF4003) MC28_2628 PF10901 Protein of unknown function (DUF2690) MC28_2630 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MC28_2630 PF03466 LysR substrate binding domain MC28_2631 PF00107 Zinc-binding dehydrogenase MC28_2631 PF08240 Alcohol dehydrogenase GroES-like domain MC28_2634 PF00488 MutS domain V MC28_2634 PF01713 Smr domain MC28_2635 PF00128 Alpha amylase, catalytic domain MC28_2635 PF09154 Domain of unknown function (DUF1939) MC28_2636 PF00797 N-acetyltransferase MC28_2637 PF08439 Oligopeptidase F MC28_2637 PF01432 Peptidase family M3 MC28_2638 PF04371 Porphyromonas-type peptidyl-arginine deiminase MC28_2639 PF07969 Amidohydrolase family MC28_2642 PF01062 Bestrophin, RFP-TM, chloride channel MC28_2643 PF06146 Phosphate-starvation-inducible E MC28_2644 PF04371 Porphyromonas-type peptidyl-arginine deiminase MC28_2645 PF00144 Beta-lactamase MC28_2648 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MC28_2648 PF03466 LysR substrate binding domain MC28_2651 PF03009 Glycerophosphoryl diester phosphodiesterase family MC28_2652 PF01494 FAD binding domain MC28_2654 PF01022 Bacterial regulatory protein, arsR family MC28_2655 PF00107 Zinc-binding dehydrogenase MC28_2655 PF08240 Alcohol dehydrogenase GroES-like domain MC28_2656 PF02696 Uncharacterized ACR, YdiU/UPF0061 family MC28_2657 PF18801 response regulator aspartate phosphatase H, N terminal MC28_2659 PF04299 Putative FMN-binding domain MC28_2662 PF01565 FAD binding domain MC28_2662 PF02913 FAD linked oxidases, C-terminal domain MC28_2667 PF03707 Bacterial signalling protein N terminal repeat MC28_2667 PF00563 EAL domain MC28_2667 PF00990 Diguanylate cyclase, GGDEF domain MC28_2669 PF02557 D-alanyl-D-alanine carboxypeptidase MC28_2672 PF01022 Bacterial regulatory protein, arsR family MC28_2675 PF13276 HTH-like domain MC28_2675 PF00665 Integrase core domain MC28_2675 PF13333 Integrase core domain MC28_2677 PF00989 PAS fold MC28_2677 PF00512 His Kinase A (phospho-acceptor) domain MC28_2677 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_2678 PF08453 Peptidase family M9 N-terminal MC28_2678 PF01752 Collagenase MC28_2678 PF18496 Collagenase G catalytic helper subdomain MC28_2679 PF02308 MgtC family MC28_2681 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MC28_2682 PF04294 VanW like protein MC28_2685 PF13039 Protein of unknown function (DUF3900) MC28_2685 PF13037 Domain of unknown function (DUF3898) MC28_2688 PF00313 'Cold-shock' DNA-binding domain MC28_2690 PF00258 Flavodoxin MC28_2692 PF00293 NUDIX domain MC28_2694 PF00132 Bacterial transferase hexapeptide (six repeats) MC28_2696 PF00106 short chain dehydrogenase MC28_2698 PF00206 Lyase MC28_2698 PF14698 Argininosuccinate lyase C-terminal MC28_2700 PF01156 Inosine-uridine preferring nucleoside hydrolase MC28_2701 PF00474 Sodium:solute symporter family MC28_2703 PF00171 Aldehyde dehydrogenase family MC28_2705 PF14151 YfhD-like protein MC28_2706 PF13249 Squalene-hopene cyclase N-terminal domain MC28_2706 PF13243 Squalene-hopene cyclase C-terminal domain MC28_2707 PF02681 Divergent PAP2 family MC28_2708 PF00892 EamA-like transporter family MC28_2712 PF10609 NUBPL iron-transfer P-loop NTPase MC28_2714 PF02391 MoaE protein MC28_2715 PF03454 MoeA C-terminal region (domain IV) MC28_2715 PF03453 MoeA N-terminal region (domain I and II) MC28_2715 PF00994 Probable molybdopterin binding domain MC28_2716 PF00899 ThiF family MC28_2717 PF01226 Formate/nitrite transporter MC28_2718 PF06463 Molybdenum Cofactor Synthesis C MC28_2718 PF04055 Radical SAM superfamily MC28_2719 PF02634 FdhD/NarQ family MC28_2720 PF10057 Uncharacterized conserved protein (DUF2294) MC28_2721 PF07849 Protein of unknown function (DUF1641) MC28_2722 PF00384 Molybdopterin oxidoreductase MC28_2722 PF04879 Molybdopterin oxidoreductase Fe4S4 domain MC28_2722 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region MC28_2722 PF00037 4Fe-4S binding domain MC28_2722 PF01568 Molydopterin dinucleotide binding domain MC28_2724 PF03323 Bacillus/Clostridium GerA spore germination protein MC28_2726 PF05504 Spore germination B3/ GerAC like, C-terminal MC28_2727 PF13520 Amino acid permease MC28_2734 PF08241 Methyltransferase domain MC28_2735 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MC28_2736 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MC28_2737 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MC28_2738 PF00375 Sodium:dicarboxylate symporter family MC28_2739 PF03816 Cell envelope-related transcriptional attenuator domain MC28_2741 PF08281 Sigma-70, region 4 MC28_2741 PF04542 Sigma-70 region 2 MC28_2743 PF00005 ABC transporter MC28_2743 PF13732 Domain of unknown function (DUF4162) MC28_2745 PF02894 Oxidoreductase family, C-terminal alpha/beta domain MC28_2745 PF01408 Oxidoreductase family, NAD-binding Rossmann fold MC28_2746 PF03989 DNA gyrase C-terminal domain, beta-propeller MC28_2746 PF00521 DNA gyrase/topoisomerase IV, subunit A MC28_2747 PF01751 Toprim domain MC28_2747 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_2747 PF00204 DNA gyrase B MC28_2747 PF00986 DNA gyrase B subunit, carboxyl terminus MC28_2748 PF13380 CoA binding domain MC28_2749 PF13180 PDZ domain MC28_2750 PF00486 Transcriptional regulatory protein, C terminal MC28_2750 PF00072 Response regulator receiver domain MC28_2752 PF13597 Anaerobic ribonucleoside-triphosphate reductase MC28_2752 PF03477 ATP cone domain MC28_2753 PF02660 Glycerol-3-phosphate acyltransferase MC28_2754 PF01521 Iron-sulphur cluster biosynthesis MC28_2755 PF03061 Thioesterase superfamily MC28_2756 PF00704 Glycosyl hydrolases family 18 MC28_2756 PF01476 LysM domain MC28_2757 PF08177 Small acid-soluble spore protein N family MC28_2758 PF13040 Fur-regulated basic protein B MC28_2759 PF11490 DNA polymerase III polC-type N-terminus II MC28_2759 PF17657 Bacterial DNA polymerase III alpha subunit finger domain MC28_2759 PF14579 Helix-hairpin-helix motif MC28_2759 PF02811 PHP domain MC28_2759 PF00929 Exonuclease MC28_2759 PF07733 Bacterial DNA polymerase III alpha NTPase domain MC28_2759 PF01336 OB-fold nucleic acid binding domain MC28_2760 PF00578 AhpC/TSA family MC28_2762 PF00330 Aconitase family (aconitate hydratase) MC28_2762 PF00694 Aconitase C-terminal domain MC28_2764 PF01522 Polysaccharide deacetylase MC28_2766 PF08179 Small acid-soluble spore protein P family MC28_2768 PF07690 Major Facilitator Superfamily MC28_2770 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MC28_2770 PF01411 tRNA synthetases class II (A) MC28_2770 PF02272 DHHA1 domain MC28_2771 PF13344 Haloacid dehalogenase-like hydrolase MC28_2771 PF00293 NUDIX domain MC28_2773 PF00108 Thiolase, N-terminal domain MC28_2773 PF02803 Thiolase, C-terminal domain MC28_2774 PF00501 AMP-binding enzyme MC28_2774 PF13193 AMP-binding enzyme C-terminal domain MC28_2775 PF02632 BioY family MC28_2776 PF13193 AMP-binding enzyme C-terminal domain MC28_2776 PF00501 AMP-binding enzyme MC28_2777 PF01381 Helix-turn-helix MC28_2781 PF05532 CsbD-like MC28_2785 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 MC28_2785 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) MC28_2787 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_2787 PF00989 PAS fold MC28_2787 PF13188 PAS domain MC28_2787 PF13426 PAS domain MC28_2787 PF00512 His Kinase A (phospho-acceptor) domain MC28_2788 PF01738 Dienelactone hydrolase family MC28_2789 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MC28_2790 PF01645 Conserved region in glutamate synthase MC28_2791 PF00724 NADH:flavin oxidoreductase / NADH oxidase family MC28_2792 PF02559 CarD-like/TRCF domain MC28_2793 PF00491 Arginase family MC28_2794 PF01979 Amidohydrolase family MC28_2795 PF01175 Urocanase Rossmann-like domain MC28_2795 PF17391 Urocanase N-terminal domain MC28_2795 PF17392 Urocanase C-terminal domain MC28_2796 PF00221 Aromatic amino acid lyase MC28_2803 PF11084 Protein of unknown function (DUF2621) MC28_2804 PF07301 Protein of unknown function (DUF1453) MC28_2805 PF02683 Cytochrome C biogenesis protein transmembrane region MC28_2810 PF00005 ABC transporter MC28_2813 PF03466 LysR substrate binding domain MC28_2813 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MC28_2814 PF03788 LrgA family MC28_2815 PF04172 LrgB-like family MC28_2816 PF13344 Haloacid dehalogenase-like hydrolase MC28_2816 PF00293 NUDIX domain MC28_2818 PF01925 Sulfite exporter TauE/SafE MC28_2822 PF01183 Glycosyl hydrolases family 25 MC28_2822 PF01471 Putative peptidoglycan binding domain MC28_2823 PF00664 ABC transporter transmembrane region MC28_2823 PF00005 ABC transporter MC28_2824 PF00005 ABC transporter MC28_2824 PF00664 ABC transporter transmembrane region MC28_2826 PF10747 Sporulation inhibitor of replication protein SirA MC28_2827 PF00456 Transketolase, thiamine diphosphate binding domain MC28_2827 PF02779 Transketolase, pyrimidine binding domain MC28_2827 PF02780 Transketolase, C-terminal domain MC28_2828 PF00528 Binding-protein-dependent transport system inner membrane component MC28_2829 PF00528 Binding-protein-dependent transport system inner membrane component MC28_2830 PF00005 ABC transporter MC28_2832 PF00149 Calcineurin-like phosphoesterase MC28_2832 PF02872 5'-nucleotidase, C-terminal domain MC28_2833 PF05979 Bacterial protein of unknown function (DUF896) MC28_2834 PF00239 Resolvase, N terminal domain MC28_2835 PF01726 LexA DNA binding domain MC28_2835 PF00717 Peptidase S24-like MC28_2838 PF03551 Transcriptional regulator PadR-like family MC28_2839 PF00664 ABC transporter transmembrane region MC28_2839 PF00005 ABC transporter MC28_2845 PF13537 Glutamine amidotransferase domain MC28_2845 PF00733 Asparagine synthase MC28_2846 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family MC28_2848 PF01820 D-ala D-ala ligase N-terminus MC28_2848 PF07478 D-ala D-ala ligase C-terminus MC28_2849 PF02397 Bacterial sugar transferase MC28_2851 PF13229 Right handed beta helix region MC28_2856 PF00534 Glycosyl transferases group 1 MC28_2856 PF13439 Glycosyltransferase Family 4 MC28_2858 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase MC28_2858 PF00535 Glycosyl transferase family 2 MC28_2859 PF13439 Glycosyltransferase Family 4 MC28_2859 PF00534 Glycosyl transferases group 1 MC28_2860 PF13439 Glycosyltransferase Family 4 MC28_2860 PF00534 Glycosyl transferases group 1 MC28_2861 PF02719 Polysaccharide biosynthesis protein MC28_2864 PF03951 Glutamine synthetase, beta-Grasp domain MC28_2864 PF00120 Glutamine synthetase, catalytic domain MC28_2865 PF13411 MerR HTH family regulatory protein MC28_2866 PF06838 Methionine gamma-lyase MC28_2867 PF16360 GTP-binding GTPase Middle Region MC28_2867 PF01926 50S ribosome-binding GTPase MC28_2867 PF13167 GTP-binding GTPase N-terminal MC28_2868 PF03458 UPF0126 domain MC28_2870 PF17866 AAA lid domain MC28_2870 PF00004 ATPase family associated with various cellular activities (AAA) MC28_2875 PF00665 Integrase core domain MC28_2875 PF13333 Integrase core domain MC28_2875 PF13276 HTH-like domain MC28_2876 PF17209 Hfq protein MC28_2879 PF01476 LysM domain MC28_2879 PF06725 3D domain MC28_2880 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 MC28_2880 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit MC28_2881 PF00294 pfkB family carbohydrate kinase MC28_2882 PF08220 DeoR-like helix-turn-helix domain MC28_2882 PF00455 DeoR C terminal sensor domain MC28_2883 PF00465 Iron-containing alcohol dehydrogenase MC28_2884 PF04238 Protein of unknown function (DUF420) MC28_2887 PF00324 Amino acid permease MC28_2888 PF00041 Fibronectin type III domain MC28_2888 PF00704 Glycosyl hydrolases family 18 MC28_2889 PF01546 Peptidase family M20/M25/M40 MC28_2889 PF07687 Peptidase dimerisation domain MC28_2890 PF10518 TAT (twin-arginine translocation) pathway signal sequence MC28_2890 PF00149 Calcineurin-like phosphoesterase MC28_2891 PF01226 Formate/nitrite transporter MC28_2892 PF00216 Bacterial DNA-binding protein MC28_2894 PF00403 Heavy-metal-associated domain MC28_2896 PF02583 Metal-sensitive transcriptional repressor MC28_2901 PF00005 ABC transporter MC28_2902 PF01032 FecCD transport family MC28_2903 PF01032 FecCD transport family MC28_2904 PF01497 Periplasmic binding protein MC28_2905 PF03372 Endonuclease/Exonuclease/phosphatase family MC28_2906 PF12833 Helix-turn-helix domain MC28_2906 PF02805 Metal binding domain of Ada MC28_2907 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain MC28_2907 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain MC28_2908 PF07934 8-oxoguanine DNA glycosylase, N-terminal domain MC28_2908 PF00730 HhH-GPD superfamily base excision DNA repair protein MC28_2909 PF07687 Peptidase dimerisation domain MC28_2909 PF01546 Peptidase family M20/M25/M40 MC28_2915 PF03707 Bacterial signalling protein N terminal repeat MC28_2915 PF00990 Diguanylate cyclase, GGDEF domain MC28_2915 PF00563 EAL domain MC28_2916 PF04101 Glycosyltransferase family 28 C-terminal domain MC28_2916 PF03033 Glycosyltransferase family 28 N-terminal domain MC28_2918 PF16363 GDP-mannose 4,6 dehydratase MC28_2919 PF02719 Polysaccharide biosynthesis protein MC28_2919 PF08485 Polysaccharide biosynthesis protein C-terminal MC28_2922 PF10787 Uncharacterised protein from bacillus cereus group MC28_2923 PF04172 LrgB-like family MC28_2925 PF00155 Aminotransferase class I and II MC28_2925 PF00392 Bacterial regulatory proteins, gntR family MC28_2926 PF00364 Biotin-requiring enzyme MC28_2926 PF00561 alpha/beta hydrolase fold MC28_2927 PF02585 GlcNAc-PI de-N-acetylase MC28_2928 PF00392 Bacterial regulatory proteins, gntR family MC28_2928 PF07702 UTRA domain MC28_2929 PF00232 Glycosyl hydrolase family 1 MC28_2930 PF00388 Phosphatidylinositol-specific phospholipase C, X domain MC28_2931 PF00082 Subtilase family MC28_2932 PF07486 Cell Wall Hydrolase MC28_2934 PF00884 Sulfatase MC28_2937 PF01119 DNA mismatch repair protein, C-terminal domain MC28_2937 PF08676 MutL C terminal dimerisation domain MC28_2938 PF05192 MutS domain III MC28_2938 PF01624 MutS domain I MC28_2938 PF05190 MutS family domain IV MC28_2938 PF05188 MutS domain II MC28_2938 PF00488 MutS domain V MC28_2939 PF10628 Outer spore coat protein E (CotE) MC28_2940 PF06133 Control of competence regulator ComK, YlbF/YmcA MC28_2941 PF04055 Radical SAM superfamily MC28_2941 PF00919 Uncharacterized protein family UPF0004 MC28_2941 PF01938 TRAM domain MC28_2942 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MC28_2943 PF01558 Pyruvate ferredoxin/flavodoxin oxidoreductase MC28_2943 PF17147 Pyruvate:ferredoxin oxidoreductase core domain II MC28_2943 PF01855 Pyruvate flavodoxin/ferredoxin oxidoreductase, thiamine diP-bdg MC28_2944 PF01244 Membrane dipeptidase (Peptidase family M19) MC28_2945 PF04232 Stage V sporulation protein S (SpoVS) MC28_2946 PF13277 YmdB-like protein MC28_2947 PF01966 HD domain MC28_2947 PF00013 KH domain MC28_2947 PF12072 Domain of unknown function (DUF3552) MC28_2948 PF00154 recA bacterial DNA recombination protein MC28_2951 PF02464 Competence-damaged protein MC28_2951 PF00994 Probable molybdopterin binding domain MC28_2951 PF18146 Damage-inducible protein CinA KH domain MC28_2952 PF01066 CDP-alcohol phosphatidyltransferase MC28_2953 PF13464 Domain of unknown function (DUF4115) MC28_2954 PF11868 Protein of unknown function (DUF3388) MC28_2955 PF11588 Protein of unknown function (DUF3243) MC28_2957 PF05193 Peptidase M16 inactive domain MC28_2957 PF00675 Insulinase (Peptidase family M16) MC28_2958 PF05193 Peptidase M16 inactive domain MC28_2963 PF07702 UTRA domain MC28_2963 PF00392 Bacterial regulatory proteins, gntR family MC28_2964 PF01580 FtsK/SpoIIIE family MC28_2964 PF09397 Ftsk gamma domain MC28_2964 PF17854 FtsK alpha domain MC28_2965 PF14035 YlzJ-like protein MC28_2966 PF00574 Clp protease MC28_2967 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain MC28_2967 PF00753 Metallo-beta-lactamase superfamily MC28_2967 PF17770 Ribonuclease J C-terminal domain MC28_2968 PF00701 Dihydrodipicolinate synthetase family MC28_2969 PF13840 ACT domain MC28_2969 PF00696 Amino acid kinase family MC28_2970 PF01118 Semialdehyde dehydrogenase, NAD binding domain MC28_2970 PF02774 Semialdehyde dehydrogenase, dimerisation domain MC28_2971 PF02441 Flavoprotein MC28_2976 PF11799 impB/mucB/samB family C-terminal domain MC28_2976 PF00817 impB/mucB/samB family MC28_2976 PF11798 IMS family HHH motif MC28_2982 PF01510 N-acetylmuramoyl-L-alanine amidase MC28_2997 PF00574 Clp protease MC28_3006 PF01476 LysM domain MC28_3006 PF06725 3D domain MC28_3007 PF08239 Bacterial SH3 domain MC28_3007 PF00877 NlpC/P60 family MC28_3007 PF01476 LysM domain MC28_3008 PF00589 Phage integrase family MC28_3015 PF03796 DnaB-like helicase C terminal domain MC28_3015 PF00772 DnaB-like helicase N terminal domain MC28_3022 PF01381 Helix-turn-helix MC28_3027 PF16924 Dipicolinate synthase subunit A N-terminal domain MC28_3027 PF01262 Alanine dehydrogenase/PNT, C-terminal domain MC28_3028 PF05239 PRC-barrel domain MC28_3029 PF05193 Peptidase M16 inactive domain MC28_3029 PF00675 Insulinase (Peptidase family M16) MC28_3030 PF01522 Polysaccharide deacetylase MC28_3031 PF01138 3' exoribonuclease family, domain 1 MC28_3031 PF00013 KH domain MC28_3031 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain MC28_3031 PF00575 S1 RNA binding domain MC28_3031 PF03725 3' exoribonuclease family, domain 2 MC28_3032 PF00312 Ribosomal protein S15 MC28_3033 PF01687 Riboflavin kinase MC28_3033 PF06574 FAD synthetase MC28_3034 PF16198 tRNA pseudouridylate synthase B C-terminal domain MC28_3034 PF01509 TruB family pseudouridylate synthase (N terminal domain) MC28_3035 PF02033 Ribosome-binding factor A MC28_3036 PF00009 Elongation factor Tu GTP binding domain MC28_3036 PF04760 Translation initiation factor IF-2, N-terminal region MC28_3036 PF11987 Translation-initiation factor 2 MC28_3037 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family MC28_3038 PF04296 Protein of unknown function (DUF448) MC28_3039 PF00575 S1 RNA binding domain MC28_3039 PF13184 NusA-like KH domain MC28_3039 PF08529 NusA N-terminal domain MC28_3040 PF17384 RimP C-terminal SH3 domain MC28_3040 PF02576 RimP N-terminal domain MC28_3041 PF17657 Bacterial DNA polymerase III alpha subunit finger domain MC28_3041 PF00929 Exonuclease MC28_3041 PF02811 PHP domain MC28_3041 PF14480 DNA polymerase III polC-type N-terminus I MC28_3041 PF11490 DNA polymerase III polC-type N-terminus II MC28_3041 PF07733 Bacterial DNA polymerase III alpha NTPase domain MC28_3041 PF14579 Helix-hairpin-helix motif MC28_3042 PF03129 Anticodon binding domain MC28_3042 PF04073 Aminoacyl-tRNA editing domain MC28_3042 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MC28_3043 PF02163 Peptidase family M50 MC28_3043 PF17820 PDZ domain MC28_3044 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain MC28_3044 PF13288 DXP reductoisomerase C-terminal domain MC28_3044 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase MC28_3046 PF01255 Putative undecaprenyl diphosphate synthase MC28_3047 PF01765 Ribosome recycling factor MC28_3048 PF00696 Amino acid kinase family MC28_3050 PF00318 Ribosomal protein S2 MC28_3051 PF06018 CodY GAF-like domain MC28_3051 PF08222 CodY helix-turn-helix domain MC28_3052 PF00004 ATPase family associated with various cellular activities (AAA) MC28_3052 PF07724 AAA domain (Cdc48 subfamily) MC28_3052 PF10431 C-terminal, D2-small domain, of ClpB protein MC28_3053 PF00227 Proteasome subunit MC28_3054 PF00589 Phage integrase family MC28_3054 PF02899 Phage integrase, N-terminal SAM-like domain MC28_3055 PF01134 Glucose inhibited division protein A MC28_3056 PF01131 DNA topoisomerase MC28_3056 PF01396 Topoisomerase DNA binding C4 zinc finger MC28_3056 PF01751 Toprim domain MC28_3057 PF02481 DNA recombination-mediator protein A MC28_3058 PF02629 CoA binding domain MC28_3058 PF00549 CoA-ligase MC28_3059 PF00549 CoA-ligase MC28_3059 PF08442 ATP-grasp domain MC28_3060 PF01351 Ribonuclease HII MC28_3061 PF01926 50S ribosome-binding GTPase MC28_3062 PF10502 Signal peptidase, peptidase S26 MC28_3064 PF01746 tRNA (Guanine-1)-methyltransferase MC28_3065 PF05239 PRC-barrel domain MC28_3065 PF01782 RimM N-terminal domain MC28_3067 PF00886 Ribosomal protein S16 MC28_3068 PF02881 SRP54-type protein, helical bundle domain MC28_3068 PF00448 SRP54-type protein, GTPase domain MC28_3068 PF02978 Signal peptide binding domain MC28_3069 PF04297 Putative helix-turn-helix protein, YlxM / p13 like MC28_3070 PF02881 SRP54-type protein, helical bundle domain MC28_3070 PF00448 SRP54-type protein, GTPase domain MC28_3071 PF02463 RecF/RecN/SMC N terminal domain MC28_3071 PF06470 SMC proteins Flexible Hinge Domain MC28_3072 PF14622 Ribonuclease-III-like MC28_3072 PF00035 Double-stranded RNA binding motif MC28_3073 PF00550 Phosphopantetheine attachment site MC28_3075 PF00698 Acyl transferase domain MC28_3076 PF02504 Fatty acid synthesis protein MC28_3077 PF03061 Thioesterase superfamily MC28_3078 PF00271 Helicase conserved C-terminal domain MC28_3078 PF00270 DEAD/DEAH box helicase MC28_3078 PF17191 RecG wedge domain MC28_3079 PF13684 Dihydroxyacetone kinase family MC28_3079 PF02734 DAK2 domain MC28_3080 PF03780 Asp23 family, cell envelope-related function MC28_3081 PF00830 Ribosomal L28 family MC28_3082 PF04263 Thiamin pyrophosphokinase, catalytic domain MC28_3082 PF04265 Thiamin pyrophosphokinase, vitamin B1 binding domain MC28_3083 PF00834 Ribulose-phosphate 3 epimerase family MC28_3084 PF16745 RsgA N-terminal domain MC28_3084 PF03193 RsgA GTPase MC28_3085 PF00069 Protein kinase domain MC28_3085 PF03793 PASTA domain MC28_3087 PF04055 Radical SAM superfamily MC28_3088 PF01029 NusB family MC28_3088 PF01189 16S rRNA methyltransferase RsmB/F MC28_3090 PF01327 Polypeptide deformylase MC28_3091 PF04851 Type III restriction enzyme, res subunit MC28_3091 PF17764 3′ DNA-binding domain (3′BD) MC28_3091 PF00271 Helicase conserved C-terminal domain MC28_3091 PF18074 Primosomal protein N C-terminal domain MC28_3091 PF18319 PriA DNA helicase Cys-rich region (CRR) domain MC28_3092 PF02441 Flavoprotein MC28_3092 PF04127 DNA / pantothenate metabolism flavoprotein MC28_3093 PF01192 RNA polymerase Rpb6 MC28_3094 PF00625 Guanylate kinase MC28_3095 PF04025 Domain of unknown function (DUF370) MC28_3096 PF03755 YicC-like family, N-terminal region MC28_3096 PF08340 Domain of unknown function (DUF1732) MC28_3097 PF00690 Cation transporter/ATPase, N-terminus MC28_3097 PF00689 Cation transporting ATPase, C-terminus MC28_3099 PF01321 Creatinase/Prolidase N-terminal domain MC28_3099 PF00557 Metallopeptidase family M24 MC28_3105 PF00156 Phosphoribosyl transferase domain MC28_3106 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family MC28_3107 PF01180 Dihydroorotate dehydrogenase MC28_3108 PF10418 Iron-sulfur cluster binding domain of dihydroorotate dehydrogenase B MC28_3109 PF02142 MGS-like domain MC28_3109 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MC28_3109 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MC28_3110 PF00117 Glutamine amidotransferase class-I MC28_3110 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain MC28_3111 PF01979 Amidohydrolase family MC28_3112 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MC28_3112 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain MC28_3113 PF00860 Permease family MC28_3114 PF00156 Phosphoribosyl transferase domain MC28_3115 PF01479 S4 domain MC28_3115 PF00849 RNA pseudouridylate synthase MC28_3116 PF01252 Signal peptidase (SPase) II MC28_3118 PF08264 Anticodon-binding domain of tRNA MC28_3118 PF00133 tRNA synthetases class I (I, L, M and V) MC28_3118 PF06827 Zinc finger found in FPG and IleRS MC28_3119 PF05103 DivIVA protein MC28_3120 PF17774 Putative RNA-binding domain in YlmH MC28_3120 PF01479 S4 domain MC28_3121 PF04472 Cell division protein SepF MC28_3122 PF01168 Alanine racemase, N-terminal domain MC28_3124 PF05239 PRC-barrel domain MC28_3125 PF04539 Sigma-70 region 3 MC28_3125 PF04542 Sigma-70 region 2 MC28_3125 PF04545 Sigma-70, region 4 MC28_3126 PF04542 Sigma-70 region 2 MC28_3126 PF04545 Sigma-70, region 4 MC28_3127 PF03419 Sporulation factor SpoIIGA MC28_3128 PF12327 FtsZ family, C-terminal domain MC28_3128 PF00091 Tubulin/FtsZ family, GTPase domain MC28_3129 PF02491 SHS2 domain inserted in FTSA MC28_3130 PF08478 POTRA domain, FtsQ-type MC28_3130 PF03799 Cell division protein FtsQ MC28_3131 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain MC28_3131 PF01565 FAD binding domain MC28_3132 PF04101 Glycosyltransferase family 28 C-terminal domain MC28_3132 PF03033 Glycosyltransferase family 28 N-terminal domain MC28_3133 PF01098 Cell cycle protein MC28_3134 PF08245 Mur ligase middle domain MC28_3134 PF02875 Mur ligase family, glutamate ligase domain MC28_3135 PF10555 Phospho-N-acetylmuramoyl-pentapeptide-transferase signature 1 MC28_3135 PF00953 Glycosyl transferase family 4 MC28_3136 PF08245 Mur ligase middle domain MC28_3136 PF02875 Mur ligase family, glutamate ligase domain MC28_3136 PF01225 Mur ligase family, catalytic domain MC28_3137 PF00905 Penicillin binding protein transpeptidase domain MC28_3137 PF03793 PASTA domain MC28_3137 PF03717 Penicillin-binding Protein dimerisation domain MC28_3139 PF04977 Septum formation initiator MC28_3140 PF01795 MraW methylase family MC28_3141 PF10079 Bacillithiol biosynthesis BshC MC28_3142 PF02558 Ketopantoate reductase PanE/ApbA MC28_3142 PF08546 Ketopantoate reductase PanE/ApbA C terminal MC28_3143 PF00583 Acetyltransferase (GNAT) family MC28_3145 PF01783 Ribosomal L32p protein family MC28_3146 PF02620 Large ribosomal RNA subunit accumulation protein YceD MC28_3154 PF05105 Bacteriophage holin family MC28_3171 PF00574 Clp protease MC28_3173 PF03354 Phage Terminase MC28_3179 PF00589 Phage integrase family MC28_3197 PF18277 AbrB C-terminal domain MC28_3197 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin MC28_3202 PF01381 Helix-turn-helix MC28_3209 PF00589 Phage integrase family MC28_3209 PF14659 Phage integrase, N-terminal SAM-like domain MC28_3210 PF05636 HIGH Nucleotidyl Transferase MC28_3211 PF05362 Lon protease (S16) C-terminal proteolytic domain MC28_3211 PF13180 PDZ domain MC28_3212 PF01734 Patatin-like phospholipase MC28_3213 PF07670 Nucleoside recognition MC28_3214 PF01467 Cytidylyltransferase-like MC28_3217 PF09902 Uncharacterized protein conserved in bacteria (DUF2129) MC28_3218 PF06133 Control of competence regulator ComK, YlbF/YmcA MC28_3219 PF00300 Histidine phosphatase superfamily (branch 1) MC28_3220 PF14003 YlbE-like protein MC28_3221 PF14071 Putative coat protein MC28_3222 PF00188 Cysteine-rich secretory protein family MC28_3222 PF14504 CAP-associated N-terminal MC28_3223 PF08868 YugN-like family MC28_3224 PF00795 Carbon-nitrogen hydrolase MC28_3225 PF09678 Cytochrome c oxidase caa3 assembly factor (Caa3_CtaG) MC28_3226 PF03626 Prokaryotic Cytochrome C oxidase subunit IV MC28_3227 PF00510 Cytochrome c oxidase subunit III MC28_3228 PF00115 Cytochrome C and Quinol oxidase polypeptide I MC28_3229 PF00034 Cytochrome c MC28_3229 PF00116 Cytochrome C oxidase subunit II, periplasmic domain MC28_3229 PF02790 Cytochrome C oxidase subunit II, transmembrane domain MC28_3230 PF01040 UbiA prenyltransferase family MC28_3231 PF02628 Cytochrome oxidase assembly protein MC28_3232 PF00364 Biotin-requiring enzyme MC28_3232 PF02785 Biotin carboxylase C-terminal domain MC28_3232 PF00289 Biotin carboxylase, N-terminal domain MC28_3232 PF02436 Conserved carboxylase domain MC28_3232 PF00682 HMGL-like MC28_3232 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MC28_3234 PF01098 Cell cycle protein MC28_3235 PF07408 Protein of unknown function (DUF1507) MC28_3237 PF13638 PIN domain MC28_3237 PF02562 PhoH-like protein MC28_3239 PF09963 Uncharacterized protein conserved in bacteria (DUF2197) MC28_3241 PF14036 YlaH-like protein MC28_3244 PF00459 Inositol monophosphatase family MC28_3246 PF06335 Protein of unknown function (DUF1054) MC28_3247 PF05256 Uncharacterised protein family (UPF0223) MC28_3248 PF01276 Orn/Lys/Arg decarboxylase, major domain MC28_3248 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain MC28_3255 PF03062 MBOAT, membrane-bound O-acyltransferase family MC28_3258 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MC28_3258 PF07992 Pyridine nucleotide-disulphide oxidoreductase MC28_3259 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) MC28_3259 PF02817 e3 binding domain MC28_3259 PF00364 Biotin-requiring enzyme MC28_3260 PF02780 Transketolase, C-terminal domain MC28_3260 PF02779 Transketolase, pyrimidine binding domain MC28_3261 PF00676 Dehydrogenase E1 component MC28_3263 PF01327 Polypeptide deformylase MC28_3266 PF00753 Metallo-beta-lactamase superfamily MC28_3266 PF17770 Ribonuclease J C-terminal domain MC28_3266 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain MC28_3267 PF02080 TrkA-C domain MC28_3267 PF02254 TrkA-N domain MC28_3269 PF07687 Peptidase dimerisation domain MC28_3269 PF01546 Peptidase family M20/M25/M40 MC28_3271 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MC28_3271 PF03466 LysR substrate binding domain MC28_3274 PF04308 Ribonuclease H-like MC28_3275 PF08796 Protein of unknown function (DUF1797) MC28_3279 PF00563 EAL domain MC28_3279 PF10388 EAL-domain associated signalling protein domain MC28_3281 PF00149 Calcineurin-like phosphoesterase MC28_3281 PF10518 TAT (twin-arginine translocation) pathway signal sequence MC28_3283 PF17941 Polyphosphate kinase C-terminal domain 1 MC28_3283 PF02503 Polyphosphate kinase middle domain MC28_3283 PF13089 Polyphosphate kinase N-terminal domain MC28_3283 PF13090 Polyphosphate kinase C-terminal domain 2 MC28_3284 PF02541 Ppx/GppA phosphatase family MC28_3285 PF14177 YkyB-like protein MC28_3291 PF07690 Major Facilitator Superfamily MC28_3293 PF08267 Cobalamin-independent synthase, N-terminal domain MC28_3293 PF01717 Cobalamin-independent synthase, Catalytic domain MC28_3295 PF14040 Deoxyribonuclease NucA/NucB MC28_3297 PF00512 His Kinase A (phospho-acceptor) domain MC28_3297 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_3299 PF00155 Aminotransferase class I and II MC28_3300 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family MC28_3300 PF00356 Bacterial regulatory proteins, lacI family MC28_3301 PF00528 Binding-protein-dependent transport system inner membrane component MC28_3302 PF00528 Binding-protein-dependent transport system inner membrane component MC28_3303 PF13416 Bacterial extracellular solute-binding protein MC28_3304 PF16657 Maltogenic Amylase, C-terminal domain MC28_3304 PF02903 Alpha amylase, N-terminal ig-like domain MC28_3304 PF00128 Alpha amylase, catalytic domain MC28_3305 PF16657 Maltogenic Amylase, C-terminal domain MC28_3305 PF00128 Alpha amylase, catalytic domain MC28_3306 PF03459 TOBE domain MC28_3306 PF00005 ABC transporter MC28_3306 PF17912 MalK OB fold domain MC28_3314 PF00108 Thiolase, N-terminal domain MC28_3314 PF02803 Thiolase, C-terminal domain MC28_3315 PF00293 NUDIX domain MC28_3321 PF03551 Transcriptional regulator PadR-like family MC28_3326 PF00795 Carbon-nitrogen hydrolase MC28_3327 PF00155 Aminotransferase class I and II MC28_3328 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain MC28_3328 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain MC28_3330 PF00596 Class II Aldolase and Adducin N-terminal domain MC28_3331 PF03079 ARD/ARD' family MC28_3334 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase MC28_3334 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MC28_3335 PF00144 Beta-lactamase MC28_3336 PF00990 Diguanylate cyclase, GGDEF domain MC28_3337 PF00881 Nitroreductase family MC28_3340 PF02896 PEP-utilising enzyme, TIM barrel domain MC28_3340 PF00391 PEP-utilising enzyme, mobile domain MC28_3340 PF05524 PEP-utilising enzyme, N-terminal MC28_3341 PF00381 PTS HPr component phosphorylation site MC28_3342 PF02378 Phosphotransferase system, EIIC MC28_3342 PF00367 phosphotransferase system, EIIB MC28_3342 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 MC28_3343 PF00874 PRD domain MC28_3343 PF03123 CAT RNA binding domain MC28_3346 PF01182 Glucosamine-6-phosphate isomerases/6-phosphogluconolactonase MC28_3347 PF01979 Amidohydrolase family MC28_3349 PF04079 Segregation and condensation complex subunit ScpB MC28_3350 PF02616 Segregation and condensation protein ScpA MC28_3351 PF03745 Domain of unknown function (DUF309) MC28_3352 PF00583 Acetyltransferase (GNAT) family MC28_3353 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD MC28_3354 PF06207 Protein of unknown function (DUF1002) MC28_3356 PF03323 Bacillus/Clostridium GerA spore germination protein MC28_3357 PF14097 Stage V sporulation protein AE1 MC28_3358 PF03862 SpoVAC/SpoVAEB sporulation membrane protein MC28_3359 PF07451 Stage V sporulation protein AD (SpoVAD) MC28_3360 PF03862 SpoVAC/SpoVAEB sporulation membrane protein MC28_3361 PF13782 Stage V sporulation protein AB MC28_3362 PF12164 Stage V sporulation protein AA MC28_3364 PF00209 Sodium:neurotransmitter symporter family MC28_3365 PF04542 Sigma-70 region 2 MC28_3365 PF04539 Sigma-70 region 3 MC28_3365 PF04545 Sigma-70, region 4 MC28_3366 PF13581 Histidine kinase-like ATPase domain MC28_3367 PF01740 STAS domain MC28_3368 PF00768 D-alanyl-D-alanine carboxypeptidase MC28_3368 PF07943 Penicillin-binding protein 5, C-terminal domain MC28_3369 PF00392 Bacterial regulatory proteins, gntR family MC28_3370 PF00005 ABC transporter MC28_3374 PF01047 MarR family MC28_3376 PF00860 Permease family MC28_3377 PF01544 CorA-like Mg2+ transporter protein MC28_3378 PF07831 Pyrimidine nucleoside phosphorylase C-terminal domain MC28_3378 PF00591 Glycosyl transferase family, a/b domain MC28_3378 PF02885 Glycosyl transferase family, helical bundle domain MC28_3379 PF01048 Phosphorylase superfamily MC28_3380 PF01676 Metalloenzyme superfamily MC28_3381 PF13115 YtkA-like MC28_3382 PF02899 Phage integrase, N-terminal SAM-like domain MC28_3382 PF00589 Phage integrase family MC28_3383 PF14004 Protein of unknown function (DUF4227) MC28_3384 PF01475 Ferric uptake regulator family MC28_3385 PF01944 Stage II sporulation protein M MC28_3387 PF00293 NUDIX domain MC28_3388 PF13072 Mother cell inhibitor of FtsZ MC28_3389 PF00248 Aldo/keto reductase family MC28_3390 PF00248 Aldo/keto reductase family MC28_3391 PF04229 GrpB protein MC28_3391 PF13673 Acetyltransferase (GNAT) domain MC28_3393 PF00565 Staphylococcal nuclease homologue MC28_3393 PF00746 LPXTG cell wall anchor motif MC28_3393 PF02872 5'-nucleotidase, C-terminal domain MC28_3393 PF00149 Calcineurin-like phosphoesterase MC28_3395 PF12146 Serine aminopeptidase, S33 MC28_3396 PF03553 Na+/H+ antiporter family MC28_3396 PF13726 Na+-H+ antiporter family MC28_3397 PF00356 Bacterial regulatory proteins, lacI family MC28_3398 PF00583 Acetyltransferase (GNAT) family MC28_3399 PF12146 Serine aminopeptidase, S33 MC28_3400 PF10827 Protein of unknown function (DUF2552) MC28_3402 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MC28_3402 PF01872 RibD C-terminal domain MC28_3403 PF00677 Lumazine binding domain MC28_3404 PF00925 GTP cyclohydrolase II MC28_3404 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase MC28_3405 PF00885 6,7-dimethyl-8-ribityllumazine synthase MC28_3407 PF04055 Radical SAM superfamily MC28_3407 PF06968 Biotin and Thiamin Synthesis associated domain MC28_3408 PF13847 Methyltransferase domain MC28_3409 PF08241 Methyltransferase domain MC28_3409 PF12697 Alpha/beta hydrolase family MC28_3410 PF00155 Aminotransferase class I and II MC28_3412 PF00202 Aminotransferase class-III MC28_3415 PF02872 5'-nucleotidase, C-terminal domain MC28_3415 PF00149 Calcineurin-like phosphoesterase MC28_3417 PF13404 AsnC-type helix-turn-helix domain MC28_3417 PF01037 Lrp/AsnC ligand binding domain MC28_3420 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain MC28_3420 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MC28_3421 PF00202 Aminotransferase class-III MC28_3422 PF00696 Amino acid kinase family MC28_3423 PF01960 ArgJ family MC28_3426 PF00106 short chain dehydrogenase MC28_3427 PF00753 Metallo-beta-lactamase superfamily MC28_3428 PF03807 NADP oxidoreductase coenzyme F420-dependent MC28_3428 PF14748 Pyrroline-5-carboxylate reductase dimerisation MC28_3430 PF01842 ACT domain MC28_3430 PF03315 Serine dehydratase beta chain MC28_3433 PF00753 Metallo-beta-lactamase superfamily MC28_3433 PF12706 Beta-lactamase superfamily domain MC28_3435 PF00689 Cation transporting ATPase, C-terminus MC28_3435 PF00690 Cation transporter/ATPase, N-terminus MC28_3436 PF02308 MgtC family MC28_3437 PF11798 IMS family HHH motif MC28_3437 PF00817 impB/mucB/samB family MC28_3437 PF11799 impB/mucB/samB family C-terminal domain MC28_3438 PF07687 Peptidase dimerisation domain MC28_3438 PF01546 Peptidase family M20/M25/M40 MC28_3439 PF13302 Acetyltransferase (GNAT) domain MC28_3441 PF03734 L,D-transpeptidase catalytic domain MC28_3442 PF11728 Putative aromatic acid exporter C-terminal domain MC28_3442 PF06081 Aromatic acid exporter family member 1 MC28_3443 PF00005 ABC transporter MC28_3444 PF00528 Binding-protein-dependent transport system inner membrane component MC28_3445 PF00497 Bacterial extracellular solute-binding proteins, family 3 MC28_3446 PF06491 Disulphide isomerase MC28_3447 PF11208 Protein of unknown function (DUF2992) MC28_3448 PF00293 NUDIX domain MC28_3448 PF09297 NADH pyrophosphatase zinc ribbon domain MC28_3449 PF04239 Protein of unknown function (DUF421) MC28_3450 PF01098 Cell cycle protein MC28_3451 PF02817 e3 binding domain MC28_3451 PF00364 Biotin-requiring enzyme MC28_3451 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) MC28_3452 PF02780 Transketolase, C-terminal domain MC28_3452 PF02779 Transketolase, pyrimidine binding domain MC28_3453 PF00676 Dehydrogenase E1 component MC28_3454 PF07992 Pyridine nucleotide-disulphide oxidoreductase MC28_3454 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain MC28_3455 PF00871 Acetokinase family MC28_3456 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MC28_3456 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain MC28_3457 PF01515 Phosphate acetyl/butaryl transferase MC28_3458 PF02954 Bacterial regulatory protein, Fis family MC28_3458 PF00989 PAS fold MC28_3458 PF00158 Sigma-54 interaction domain MC28_3460 PF03009 Glycerophosphoryl diester phosphodiesterase family MC28_3461 PF14174 YycC-like protein MC28_3464 PF08769 Sporulation initiation factor Spo0A C terminal MC28_3464 PF00072 Response regulator receiver domain MC28_3465 PF05580 SpoIVB peptidase S55 MC28_3465 PF17820 PDZ domain MC28_3466 PF13476 AAA domain MC28_3467 PF02863 Arginine repressor, C-terminal domain MC28_3467 PF01316 Arginine repressor, DNA binding domain MC28_3468 PF01479 S4 domain MC28_3468 PF01728 FtsJ-like methyltransferase MC28_3469 PF02780 Transketolase, C-terminal domain MC28_3469 PF02779 Transketolase, pyrimidine binding domain MC28_3469 PF13292 1-deoxy-D-xylulose-5-phosphate synthase MC28_3470 PF00348 Polyprenyl synthetase MC28_3471 PF02609 Exonuclease VII small subunit MC28_3472 PF02601 Exonuclease VII, large subunit MC28_3472 PF13742 OB-fold nucleic acid binding domain MC28_3473 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain MC28_3473 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain MC28_3475 PF03780 Asp23 family, cell envelope-related function MC28_3476 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain MC28_3476 PF02785 Biotin carboxylase C-terminal domain MC28_3476 PF00289 Biotin carboxylase, N-terminal domain MC28_3479 PF12685 SpoIIIAH-like protein MC28_3481 PF09581 Stage III sporulation protein AF (Spore_III_AF) MC28_3482 PF09546 Stage III sporulation protein AE (spore_III_AE) MC28_3483 PF06686 Stage III sporulation protein AC/AD protein family MC28_3484 PF06686 Stage III sporulation protein AC/AD protein family MC28_3485 PF09548 Stage III sporulation protein AB (spore_III_AB) MC28_3490 PF08207 Elongation factor P (EF-P) KOW-like domain MC28_3490 PF01132 Elongation factor P (EF-P) OB domain MC28_3490 PF09285 Elongation factor P, C-terminal MC28_3491 PF01321 Creatinase/Prolidase N-terminal domain MC28_3491 PF00557 Metallopeptidase family M24 MC28_3492 PF01220 Dehydroquinase class II MC28_3493 PF11085 Conserved membrane protein YqhR MC28_3494 PF07136 Protein of unknown function (DUF1385) MC28_3496 PF13419 Haloacid dehalogenase-like hydrolase MC28_3497 PF01325 Iron dependent repressor, N-terminal DNA binding domain MC28_3497 PF02742 Iron dependent repressor, metal binding and dimerisation domain MC28_3502 PF03099 Biotin/lipoate A/B protein ligase family MC28_3503 PF00581 Rhodanese-like domain MC28_3505 PF00356 Bacterial regulatory proteins, lacI family MC28_3505 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family MC28_3507 PF00893 Small Multidrug Resistance protein MC28_3508 PF00893 Small Multidrug Resistance protein MC28_3513 PF00005 ABC transporter MC28_3514 PF00392 Bacterial regulatory proteins, gntR family MC28_3518 PF02347 Glycine cleavage system P-protein MC28_3520 PF00176 SNF2 family N-terminal domain MC28_3520 PF00271 Helicase conserved C-terminal domain MC28_3521 PF11079 Bacterial protein YqhG of unknown function MC28_3527 PF01202 Shikimate kinase MC28_3532 PF07963 Prokaryotic N-terminal methylation motif MC28_3533 PF07963 Prokaryotic N-terminal methylation motif MC28_3534 PF00482 Type II secretion system (T2SS), protein F MC28_3535 PF00437 Type II/IV secretion system protein MC28_3537 PF11117 Protein of unknown function (DUF2626) MC28_3538 PF00375 Sodium:dicarboxylate symporter family MC28_3545 PF03033 Glycosyltransferase family 28 N-terminal domain MC28_3545 PF04101 Glycosyltransferase family 28 C-terminal domain MC28_3546 PF02607 B12 binding domain MC28_3546 PF02574 Homocysteine S-methyltransferase MC28_3546 PF00809 Pterin binding enzyme MC28_3546 PF02310 B12 binding domain MC28_3546 PF02965 Vitamin B12 dependent methionine synthase, activation domain MC28_3547 PF02219 Methylenetetrahydrofolate reductase MC28_3547 PF02574 Homocysteine S-methyltransferase MC28_3548 PF01053 Cys/Met metabolism PLP-dependent enzyme MC28_3549 PF01053 Cys/Met metabolism PLP-dependent enzyme MC28_3552 PF01022 Bacterial regulatory protein, arsR family MC28_3554 PF00753 Metallo-beta-lactamase superfamily MC28_3555 PF10958 Protein of unknown function (DUF2759) MC28_3556 PF00480 ROK family MC28_3557 PF06014 Bacterial protein of unknown function (DUF910) MC28_3558 PF01812 5-formyltetrahydrofolate cyclo-ligase family MC28_3559 PF00483 Nucleotidyl transferase MC28_3560 PF01895 PhoU domain MC28_3561 PF00005 ABC transporter MC28_3562 PF00528 Binding-protein-dependent transport system inner membrane component MC28_3563 PF00528 Binding-protein-dependent transport system inner membrane component MC28_3564 PF12849 PBP superfamily domain MC28_3566 PF07690 Major Facilitator Superfamily MC28_3567 PF02777 Iron/manganese superoxide dismutases, C-terminal domain MC28_3567 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain MC28_3570 PF04551 GcpE protein MC28_3571 PF01475 Ferric uptake regulator family MC28_3572 PF00950 ABC 3 transport family MC28_3573 PF00005 ABC transporter MC28_3574 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) MC28_3574 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 MC28_3575 PF11116 Protein of unknown function (DUF2624) MC28_3576 PF01261 Xylose isomerase-like TIM barrel MC28_3577 PF00270 DEAD/DEAH box helicase MC28_3577 PF00271 Helicase conserved C-terminal domain MC28_3580 PF02401 LytB protein MC28_3581 PF01784 NIF3 (NGG1p interacting factor 3) MC28_3582 PF04816 tRNA (adenine(22)-N(1))-methyltransferase MC28_3583 PF13442 Cytochrome C oxidase, cbb3-type, subunit III MC28_3584 PF04545 Sigma-70, region 4 MC28_3584 PF00140 Sigma-70 factor, region 1.2 MC28_3584 PF04542 Sigma-70 region 2 MC28_3584 PF03979 Sigma-70 factor, region 1.1 MC28_3584 PF04539 Sigma-70 region 3 MC28_3585 PF08275 DNA primase catalytic core, N-terminal domain MC28_3585 PF01807 CHC2 zinc finger MC28_3585 PF10410 DnaB-helicase binding domain of primase MC28_3586 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 MC28_3587 PF03618 Kinase/pyrophosphorylase MC28_3588 PF00571 CBS domain MC28_3588 PF08279 HTH domain MC28_3589 PF02565 Recombination protein O C terminal MC28_3589 PF11967 Recombination protein O N terminal MC28_3591 PF07650 KH domain MC28_3591 PF01926 50S ribosome-binding GTPase MC28_3592 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MC28_3593 PF01219 Prokaryotic diacylglycerol kinase MC28_3595 PF07697 7TM-HD extracellular MC28_3595 PF07698 7TM receptor with intracellular HD hydrolase MC28_3595 PF01966 HD domain MC28_3596 PF02562 PhoH-like protein MC28_3597 PF06898 Putative stage IV sporulation protein YqfD MC28_3598 PF07873 YabP family MC28_3599 PF09424 Yqey-like protein MC28_3600 PF01165 Ribosomal protein S21 MC28_3601 PF04055 Radical SAM superfamily MC28_3601 PF00919 Uncharacterized protein family UPF0004 MC28_3601 PF01938 TRAM domain MC28_3602 PF04452 RNA methyltransferase MC28_3605 PF00012 Hsp70 protein MC28_3606 PF01025 GrpE MC28_3608 PF04055 Radical SAM superfamily MC28_3608 PF06969 HemN C-terminal domain MC28_3609 PF01638 HxlR-like helix-turn-helix MC28_3610 PF00009 Elongation factor Tu GTP binding domain MC28_3610 PF00679 Elongation factor G C-terminus MC28_3610 PF06421 GTP-binding protein LepA C-terminus MC28_3610 PF03144 Elongation factor Tu domain 2 MC28_3612 PF03418 Germination protease MC28_3613 PF01649 Ribosomal protein S20 MC28_3614 PF06144 DNA polymerase III, delta subunit MC28_3615 PF14141 YqzM-like protein MC28_3617 PF13567 Domain of unknown function (DUF4131) MC28_3617 PF00753 Metallo-beta-lactamase superfamily MC28_3617 PF03772 Competence protein MC28_3618 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region MC28_3619 PF10531 SLBB domain MC28_3620 PF14748 Pyrroline-5-carboxylate reductase dimerisation MC28_3620 PF03807 NADP oxidoreductase coenzyme F420-dependent MC28_3621 PF13649 Methyltransferase domain MC28_3623 PF01966 HD domain MC28_3625 PF01985 CRS1 / YhbY (CRM) domain MC28_3627 PF01926 50S ribosome-binding GTPase MC28_3630 PF02666 Phosphatidylserine decarboxylase MC28_3631 PF04542 Sigma-70 region 2 MC28_3631 PF04545 Sigma-70, region 4 MC28_3634 PF00471 Ribosomal protein L33 MC28_3635 PF00881 Nitroreductase family MC28_3636 PF04607 Region found in RelA / SpoT proteins MC28_3638 PF00245 Alkaline phosphatase MC28_3640 PF08386 TAP-like protein MC28_3640 PF00561 alpha/beta hydrolase fold MC28_3647 PF05922 Peptidase inhibitor I9 MC28_3647 PF00082 Subtilase family MC28_3647 PF02225 PA domain MC28_3647 PF13860 FlgD Ig-like domain MC28_3648 PF00351 Biopterin-dependent aromatic amino acid hydroxylase MC28_3650 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MC28_3651 PF07681 DoxX MC28_3657 PF00005 ABC transporter MC28_3658 PF01032 FecCD transport family MC28_3659 PF01497 Periplasmic binding protein MC28_3662 PF00171 Aldehyde dehydrogenase family MC28_3662 PF00465 Iron-containing alcohol dehydrogenase MC28_3663 PF01053 Cys/Met metabolism PLP-dependent enzyme MC28_3664 PF00291 Pyridoxal-phosphate dependent enzyme MC28_3665 PF01048 Phosphorylase superfamily MC28_3666 PF08241 Methyltransferase domain MC28_3669 PF03717 Penicillin-binding Protein dimerisation domain MC28_3669 PF00905 Penicillin binding protein transpeptidase domain MC28_3670 PF01272 Transcription elongation factor, GreA/GreB, C-term MC28_3670 PF03449 Transcription elongation factor, N-terminal MC28_3671 PF00485 Phosphoribulokinase / Uridine kinase family MC28_3675 PF02618 YceG-like family MC28_3676 PF06949 Protein of unknown function (DUF1292) MC28_3677 PF03652 Holliday junction resolvase MC28_3679 PF02272 DHHA1 domain MC28_3679 PF01411 tRNA synthetases class II (A) MC28_3679 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MC28_3681 PF01594 AI-2E family transporter MC28_3685 PF13538 UvrD-like helicase C-terminal domain MC28_3685 PF18335 ATP-dependent RecD-like DNA helicase SH3 domain MC28_3685 PF14490 Helix-hairpin-helix containing domain MC28_3688 PF00266 Aminotransferase class-V MC28_3689 PF02082 Transcriptional regulator MC28_3690 PF16193 AAA C-terminal domain MC28_3690 PF12002 MgsA AAA+ ATPase C terminal MC28_3690 PF05496 Holliday junction DNA helicase RuvB P-loop domain MC28_3692 PF00899 ThiF family MC28_3693 PF00152 tRNA synthetases class II (D, K and N) MC28_3693 PF02938 GAD domain MC28_3693 PF01336 OB-fold nucleic acid binding domain MC28_3694 PF13393 Histidyl-tRNA synthetase MC28_3694 PF03129 Anticodon binding domain MC28_3698 PF02580 D-Tyr-tRNA(Tyr) deacylase MC28_3699 PF13291 ACT domain MC28_3699 PF02824 TGS domain MC28_3699 PF04607 Region found in RelA / SpoT proteins MC28_3700 PF00156 Phosphoribosyl transferase domain MC28_3701 PF01368 DHH family MC28_3701 PF02272 DHHA1 domain MC28_3701 PF17768 RecJ OB domain MC28_3701 PF10141 Single-strand DNA-specific exonuclease, C terminal domain MC28_3702 PF01545 Cation efflux family MC28_3702 PF16916 Dimerisation domain of Zinc Transporter MC28_3703 PF02355 Protein export membrane protein MC28_3703 PF07549 SecD/SecF GG Motif MC28_3705 PF14667 Polysaccharide biosynthesis C-terminal domain MC28_3705 PF01943 Polysaccharide biosynthesis protein MC28_3706 PF04239 Protein of unknown function (DUF421) MC28_3708 PF02699 Preprotein translocase subunit MC28_3710 PF02547 Queuosine biosynthesis protein MC28_3711 PF11146 Protein of unknown function (DUF2905) MC28_3714 PF01497 Periplasmic binding protein MC28_3718 PF01476 LysM domain MC28_3719 PF02445 Quinolinate synthetase A protein MC28_3720 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain MC28_3720 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain MC28_3721 PF00890 FAD binding domain MC28_3721 PF02910 Fumarate reductase flavoprotein C-term MC28_3722 PF00266 Aminotransferase class-V MC28_3723 PF02829 3H domain MC28_3723 PF08279 HTH domain MC28_3724 PF03475 3-alpha domain MC28_3724 PF03473 MOSC domain MC28_3725 PF01842 ACT domain MC28_3725 PF00800 Prephenate dehydratase MC28_3727 PF02687 FtsX-like permease family MC28_3728 PF02687 FtsX-like permease family MC28_3729 PF00005 ABC transporter MC28_3730 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_3731 PF00486 Transcriptional regulatory protein, C terminal MC28_3731 PF00072 Response regulator receiver domain MC28_3732 PF09269 Domain of unknown function (DUF1967) MC28_3732 PF01018 GTP1/OBG MC28_3732 PF01926 50S ribosome-binding GTPase MC28_3733 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain MC28_3733 PF14682 Sporulation initiation phospho-transferase B, C-terminal MC28_3734 PF01016 Ribosomal L27 protein MC28_3735 PF04327 Cysteine protease Prp MC28_3736 PF00829 Ribosomal prokaryotic L21 protein MC28_3737 PF10150 Ribonuclease E/G family MC28_3737 PF00575 S1 RNA binding domain MC28_3738 PF02163 Peptidase family M50 MC28_3739 PF01551 Peptidase family M23 MC28_3740 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain MC28_3741 PF03775 Septum formation inhibitor MinC, C-terminal domain MC28_3743 PF04085 rod shape-determining protein MreC MC28_3745 PF04002 RadC-like JAB domain MC28_3746 PF02545 Maf-like protein MC28_3749 PF08245 Mur ligase middle domain MC28_3749 PF02875 Mur ligase family, glutamate ligase domain MC28_3750 PF00133 tRNA synthetases class I (I, L, M and V) MC28_3750 PF08264 Anticodon-binding domain of tRNA MC28_3750 PF10458 Valyl tRNA synthetase tRNA binding arm MC28_3752 PF01476 LysM domain MC28_3753 PF00202 Aminotransferase class-III MC28_3754 PF00490 Delta-aminolevulinic acid dehydratase MC28_3755 PF02602 Uroporphyrinogen-III synthase HemD MC28_3756 PF03900 Porphobilinogen deaminase, C-terminal domain MC28_3756 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain MC28_3757 PF01578 Cytochrome C assembly protein MC28_3758 PF01488 Shikimate / quinate 5-dehydrogenase MC28_3758 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain MC28_3758 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain MC28_3759 PF01047 MarR family MC28_3760 PF02566 OsmC-like protein MC28_3761 PF01926 50S ribosome-binding GTPase MC28_3762 PF02190 ATP-dependent protease La (LON) substrate-binding domain MC28_3762 PF05362 Lon protease (S16) C-terminal proteolytic domain MC28_3762 PF00004 ATPase family associated with various cellular activities (AAA) MC28_3763 PF05362 Lon protease (S16) C-terminal proteolytic domain MC28_3763 PF00004 ATPase family associated with various cellular activities (AAA) MC28_3764 PF07724 AAA domain (Cdc48 subfamily) MC28_3764 PF06689 ClpX C4-type zinc finger MC28_3764 PF10431 C-terminal, D2-small domain, of ClpB protein MC28_3765 PF05698 Bacterial trigger factor protein (TF) C-terminus MC28_3765 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase MC28_3765 PF05697 Bacterial trigger factor protein (TF) MC28_3768 PF11724 YvbH-like oligomerisation region MC28_3768 PF08000 Bacterial PH domain MC28_3770 PF12850 Calcineurin-like phosphoesterase superfamily domain MC28_3771 PF01725 Ham1 family MC28_3772 PF01138 3' exoribonuclease family, domain 1 MC28_3772 PF03725 3' exoribonuclease family, domain 2 MC28_3773 PF10646 Sporulation and spore germination MC28_3774 PF01177 Asp/Glu/Hydantoin racemase MC28_3775 PF07690 Major Facilitator Superfamily MC28_3777 PF00440 Bacterial regulatory proteins, tetR family MC28_3779 PF00196 Bacterial regulatory proteins, luxR family MC28_3780 PF00860 Permease family MC28_3781 PF07969 Amidohydrolase family MC28_3783 PF07883 Cupin domain MC28_3783 PF01381 Helix-turn-helix MC28_3784 PF13536 Putative multidrug resistance efflux transporter MC28_3785 PF00230 Major intrinsic protein MC28_3786 PF02082 Transcriptional regulator MC28_3788 PF00005 ABC transporter MC28_3788 PF13732 Domain of unknown function (DUF4162) MC28_3789 PF03767 HAD superfamily, subfamily IIIB (Acid phosphatase) MC28_3790 PF13677 Membrane MotB of proton-channel complex MotA/MotB MC28_3790 PF00691 OmpA family MC28_3791 PF01618 MotA/TolQ/ExbB proton channel family MC28_3792 PF02557 D-alanyl-D-alanine carboxypeptidase MC28_3793 PF03061 Thioesterase superfamily MC28_3794 PF13085 2Fe-2S iron-sulfur cluster binding domain MC28_3794 PF13183 4Fe-4S dicluster domain MC28_3795 PF02910 Fumarate reductase flavoprotein C-term MC28_3795 PF00890 FAD binding domain MC28_3796 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit MC28_3797 PF10702 Protein of unknown function (DUF2507) MC28_3800 PF01012 Electron transfer flavoprotein domain MC28_3800 PF00766 Electron transfer flavoprotein FAD-binding domain MC28_3801 PF01012 Electron transfer flavoprotein domain MC28_3802 PF00378 Enoyl-CoA hydratase/isomerase MC28_3803 PF08359 YsiA-like protein, C-terminal region MC28_3803 PF00440 Bacterial regulatory proteins, tetR family MC28_3804 PF13193 AMP-binding enzyme C-terminal domain MC28_3804 PF00501 AMP-binding enzyme MC28_3806 PF01497 Periplasmic binding protein MC28_3807 PF01032 FecCD transport family MC28_3810 PF05163 DinB family MC28_3816 PF00005 ABC transporter MC28_3817 PF00512 His Kinase A (phospho-acceptor) domain MC28_3817 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_3818 PF00486 Transcriptional regulatory protein, C terminal MC28_3818 PF00072 Response regulator receiver domain MC28_3820 PF09962 Uncharacterized conserved protein (DUF2196) MC28_3821 PF10672 S-adenosylmethionine-dependent methyltransferase MC28_3821 PF17785 PUA-like domain MC28_3822 PF03992 Antibiotic biosynthesis monooxygenase MC28_3823 PF04203 Sortase domain MC28_3824 PF00005 ABC transporter MC28_3825 PF01032 FecCD transport family MC28_3826 PF01497 Periplasmic binding protein MC28_3827 PF05031 Iron Transport-associated domain MC28_3829 PF05031 Iron Transport-associated domain MC28_3830 PF05525 Branched-chain amino acid transport protein MC28_3831 PF01479 S4 domain MC28_3831 PF00849 RNA pseudouridylate synthase MC28_3832 PF01713 Smr domain MC28_3832 PF00488 MutS domain V MC28_3833 PF02811 PHP domain MC28_3833 PF14791 DNA polymerase beta thumb MC28_3833 PF14716 Helix-hairpin-helix domain MC28_3834 PF02674 Colicin V production protein MC28_3837 PF11858 Domain of unknown function (DUF3378) MC28_3837 PF01351 Ribonuclease HII MC28_3839 PF01336 OB-fold nucleic acid binding domain MC28_3839 PF00152 tRNA synthetases class II (D, K and N) MC28_3840 PF03483 B3/4 domain MC28_3840 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain MC28_3840 PF01588 Putative tRNA binding domain MC28_3840 PF03484 tRNA synthetase B5 domain MC28_3840 PF03147 Ferredoxin-fold anticodon binding domain MC28_3841 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain MC28_3841 PF01409 tRNA synthetases class II core domain (F) MC28_3842 PF08032 RNA 2'-O ribose methyltransferase substrate binding MC28_3842 PF00588 SpoU rRNA Methylase family MC28_3843 PF14098 Small, acid-soluble spore protein I MC28_3844 PF01966 HD domain MC28_3847 PF07690 Major Facilitator Superfamily MC28_3849 PF16859 Tetracyclin repressor-like, C-terminal domain MC28_3849 PF00440 Bacterial regulatory proteins, tetR family MC28_3850 PF05343 M42 glutamyl aminopeptidase MC28_3852 PF00453 Ribosomal protein L20 MC28_3853 PF01632 Ribosomal protein L35 MC28_3854 PF05198 Translation initiation factor IF-3, N-terminal domain MC28_3854 PF00707 Translation initiation factor IF-3, C-terminal domain MC28_3855 PF03129 Anticodon binding domain MC28_3855 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain MC28_3855 PF02824 TGS domain MC28_3855 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MC28_3856 PF08812 YtxC-like family MC28_3857 PF01695 IstB-like ATP binding protein MC28_3857 PF07319 Primosomal protein DnaI N-terminus MC28_3858 PF07261 Replication initiation and membrane attachment MC28_3859 PF03477 ATP cone domain MC28_3861 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain MC28_3861 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MC28_3862 PF01121 Dephospho-CoA kinase MC28_3864 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain MC28_3864 PF06827 Zinc finger found in FPG and IleRS MC28_3864 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain MC28_3865 PF00476 DNA polymerase family A MC28_3865 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain MC28_3865 PF01367 5'-3' exonuclease, C-terminal SAM fold MC28_3866 PF16736 Single Cache-like MC28_3866 PF00512 His Kinase A (phospho-acceptor) domain MC28_3866 PF00989 PAS fold MC28_3866 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_3867 PF00072 Response regulator receiver domain MC28_3867 PF00486 Transcriptional regulatory protein, C terminal MC28_3870 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain MC28_3870 PF00056 lactate/malate dehydrogenase, NAD binding domain MC28_3871 PF00180 Isocitrate/isopropylmalate dehydrogenase MC28_3872 PF00285 Citrate synthase, C-terminal domain MC28_3873 PF04284 Protein of unknown function (DUF441) MC28_3874 PF01594 AI-2E family transporter MC28_3876 PF00224 Pyruvate kinase, barrel domain MC28_3876 PF00391 PEP-utilising enzyme, mobile domain MC28_3876 PF02887 Pyruvate kinase, alpha/beta domain MC28_3877 PF00365 Phosphofructokinase MC28_3879 PF17848 Acetyl-coA carboxylase zinc finger domain MC28_3879 PF01039 Carboxyl transferase domain MC28_3880 PF00392 Bacterial regulatory proteins, gntR family MC28_3881 PF00390 Malic enzyme, N-terminal domain MC28_3881 PF03949 Malic enzyme, NAD binding domain MC28_3882 PF17657 Bacterial DNA polymerase III alpha subunit finger domain MC28_3882 PF14579 Helix-hairpin-helix motif MC28_3882 PF02811 PHP domain MC28_3882 PF01336 OB-fold nucleic acid binding domain MC28_3882 PF07733 Bacterial DNA polymerase III alpha NTPase domain MC28_3883 PF14034 Sporulation protein YtrH MC28_3885 PF02272 DHHA1 domain MC28_3885 PF01368 DHH family MC28_3886 PF14007 YtpI-like protein MC28_3888 PF03061 Thioesterase superfamily MC28_3888 PF00571 CBS domain MC28_3888 PF07085 DRTGG domain MC28_3888 PF00392 Bacterial regulatory proteins, gntR family MC28_3891 PF01321 Creatinase/Prolidase N-terminal domain MC28_3891 PF00557 Metallopeptidase family M24 MC28_3892 PF11518 Protein of unknown function (DUF3221) MC28_3898 PF07883 Cupin domain MC28_3900 PF01262 Alanine dehydrogenase/PNT, C-terminal domain MC28_3900 PF05222 Alanine dehydrogenase/PNT, N-terminal domain MC28_3902 PF00582 Universal stress protein family MC28_3903 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MC28_3907 PF14698 Argininosuccinate lyase C-terminal MC28_3907 PF00206 Lyase MC28_3908 PF00764 Arginosuccinate synthase MC28_3911 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 MC28_3911 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) MC28_3912 PF12787 EcsC protein family MC28_3915 PF00871 Acetokinase family MC28_3916 PF02384 N-6 DNA Methylase MC28_3917 PF08534 Redoxin MC28_3918 PF09579 Sporulation protein YtfJ (Spore_YtfJ) MC28_3920 PF01513 ATP-NAD kinase MC28_3921 PF07969 Amidohydrolase family MC28_3923 PF00501 AMP-binding enzyme MC28_3923 PF13193 AMP-binding enzyme C-terminal domain MC28_3924 PF00269 Small, acid-soluble spore proteins, alpha/beta type MC28_3925 PF02926 THUMP domain MC28_3925 PF02568 Thiamine biosynthesis protein (ThiI) MC28_3926 PF00266 Aminotransferase class-V MC28_3928 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MC28_3928 PF03466 LysR substrate binding domain MC28_3929 PF00892 EamA-like transporter family MC28_3930 PF00440 Bacterial regulatory proteins, tetR family MC28_3931 PF13185 GAF domain MC28_3932 PF01053 Cys/Met metabolism PLP-dependent enzyme MC28_3933 PF01479 S4 domain MC28_3933 PF00163 Ribosomal protein S4/S9 N-terminal domain MC28_3937 PF00579 tRNA synthetases class I (W and Y) MC28_3937 PF01479 S4 domain MC28_3939 PF04542 Sigma-70 region 2 MC28_3939 PF08281 Sigma-70, region 4 MC28_3941 PF12464 Maltose acetyltransferase MC28_3941 PF14602 Hexapeptide repeat of succinyl-transferase MC28_3942 PF13193 AMP-binding enzyme C-terminal domain MC28_3942 PF00501 AMP-binding enzyme MC28_3943 PF00583 Acetyltransferase (GNAT) family MC28_3944 PF00571 CBS domain MC28_3945 PF00850 Histone deacetylase domain MC28_3948 PF00072 Response regulator receiver domain MC28_3948 PF00486 Transcriptional regulatory protein, C terminal MC28_3949 PF00672 HAMP domain MC28_3949 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_3949 PF00512 His Kinase A (phospho-acceptor) domain MC28_3949 PF13426 PAS domain MC28_3950 PF12796 Ankyrin repeats (3 copies) MC28_3951 PF01408 Oxidoreductase family, NAD-binding Rossmann fold MC28_3952 PF01741 Large-conductance mechanosensitive channel, MscL MC28_3956 PF00356 Bacterial regulatory proteins, lacI family MC28_3958 PF07537 CamS sex pheromone cAM373 precursor MC28_3959 PF11009 Protein of unknown function (DUF2847) MC28_3961 PF02073 Thermophilic metalloprotease (M29) MC28_3965 PF00892 EamA-like transporter family MC28_3966 PF13411 MerR HTH family regulatory protein MC28_3967 PF08245 Mur ligase middle domain MC28_3967 PF02875 Mur ligase family, glutamate ligase domain MC28_3967 PF01225 Mur ligase family, catalytic domain MC28_3969 PF09397 Ftsk gamma domain MC28_3969 PF01580 FtsK/SpoIIIE family MC28_3969 PF17854 FtsK alpha domain MC28_3970 PF01520 N-acetylmuramoyl-L-alanine amidase MC28_3970 PF01476 LysM domain MC28_3972 PF01588 Putative tRNA binding domain MC28_3972 PF14794 Domain of unknown function (DUF4479) MC28_3974 PF00085 Thioredoxin MC28_3975 PF01931 Protein of unknown function DUF84 MC28_3976 PF05343 M42 glutamyl aminopeptidase MC28_3978 PF00753 Metallo-beta-lactamase superfamily MC28_3979 PF02390 Putative methyltransferase MC28_3980 PF14165 YtzH-like protein MC28_3981 PF01636 Phosphotransferase enzyme family MC28_3982 PF17999 Pullulanase N1-terminal domain MC28_3982 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) MC28_3982 PF00128 Alpha amylase, catalytic domain MC28_3983 PF02834 LigT like Phosphoesterase MC28_3984 PF01546 Peptidase family M20/M25/M40 MC28_3985 PF08220 DeoR-like helix-turn-helix domain MC28_3986 PF01479 S4 domain MC28_3986 PF00849 RNA pseudouridylate synthase MC28_3987 PF01943 Polysaccharide biosynthesis protein MC28_3987 PF14667 Polysaccharide biosynthesis C-terminal domain MC28_3989 PF07690 Major Facilitator Superfamily MC28_3990 PF01022 Bacterial regulatory protein, arsR family MC28_3991 PF08327 Activator of Hsp90 ATPase homolog 1-like protein MC28_3993 PF10957 Sporulation protein Cse60 MC28_3994 PF02559 CarD-like/TRCF domain MC28_3996 PF06800 Sugar transport protein MC28_3999 PF02391 MoaE protein MC28_4000 PF03205 Molybdopterin guanine dinucleotide synthesis protein B MC28_4001 PF03454 MoeA C-terminal region (domain IV) MC28_4001 PF00994 Probable molybdopterin binding domain MC28_4001 PF03453 MoeA N-terminal region (domain I and II) MC28_4002 PF01967 MoaC family MC28_4003 PF00899 ThiF family MC28_4004 PF06463 Molybdenum Cofactor Synthesis C MC28_4004 PF04055 Radical SAM superfamily MC28_4008 PF00581 Rhodanese-like domain MC28_4010 PF00561 alpha/beta hydrolase fold MC28_4012 PF03323 Bacillus/Clostridium GerA spore germination protein MC28_4013 PF03845 Spore germination protein MC28_4019 PF13603 Leucyl-tRNA synthetase, Domain 2 MC28_4019 PF09334 tRNA synthetases class I (M) MC28_4019 PF00133 tRNA synthetases class I (I, L, M and V) MC28_4019 PF08264 Anticodon-binding domain of tRNA MC28_4020 PF07690 Major Facilitator Superfamily MC28_4021 PF00999 Sodium/hydrogen exchanger family MC28_4022 PF02080 TrkA-C domain MC28_4023 PF00589 Phage integrase family MC28_4027 PF04235 Protein of unknown function (DUF418) MC28_4027 PF07786 Protein of unknown function (DUF1624) MC28_4029 PF10732 Protein of unknown function (DUF2524) MC28_4030 PF16199 Radical_SAM C-terminal domain MC28_4030 PF04055 Radical SAM superfamily MC28_4031 PF06962 Putative rRNA methylase MC28_4032 PF00005 ABC transporter MC28_4034 PF01177 Asp/Glu/Hydantoin racemase MC28_4035 PF03471 Transporter associated domain MC28_4035 PF00571 CBS domain MC28_4035 PF01595 Cyclin M transmembrane N-terminal domain MC28_4040 PF00248 Aldo/keto reductase family MC28_4044 PF10776 Protein of unknown function (DUF2600) MC28_4045 PF12146 Serine aminopeptidase, S33 MC28_4047 PF01569 PAP2 superfamily MC28_4048 PF13439 Glycosyltransferase Family 4 MC28_4048 PF00534 Glycosyl transferases group 1 MC28_4049 PF12804 MobA-like NTP transferase domain MC28_4050 PF00994 Probable molybdopterin binding domain MC28_4053 PF02772 S-adenosylmethionine synthetase, central domain MC28_4053 PF02773 S-adenosylmethionine synthetase, C-terminal domain MC28_4053 PF00438 S-adenosylmethionine synthetase, N-terminal domain MC28_4054 PF01293 Phosphoenolpyruvate carboxykinase MC28_4061 PF00989 PAS fold MC28_4061 PF00512 His Kinase A (phospho-acceptor) domain MC28_4061 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_4062 PF02743 Cache domain MC28_4062 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_4062 PF00512 His Kinase A (phospho-acceptor) domain MC28_4065 PF00884 Sulfatase MC28_4069 PF00005 ABC transporter MC28_4070 PF00528 Binding-protein-dependent transport system inner membrane component MC28_4075 PF00293 NUDIX domain MC28_4080 PF02664 S-Ribosylhomocysteinase (LuxS) MC28_4081 PF00484 Carbonic anhydrase MC28_4082 PF01654 Cytochrome bd terminal oxidase subunit I MC28_4083 PF02322 Cytochrome bd terminal oxidase subunit II MC28_4084 PF10676 Spore germination protein gerPA/gerPF MC28_4086 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) MC28_4086 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 MC28_4091 PF04012 PspA/IM30 family MC28_4094 PF07670 Nucleoside recognition MC28_4094 PF07664 Ferrous iron transport protein B C terminus MC28_4094 PF17910 FeoB cytosolic helical domain MC28_4094 PF02421 Ferrous iron transport protein B MC28_4096 PF09515 Thiamine transporter protein (Thia_YuaJ) MC28_4097 PF00672 HAMP domain MC28_4097 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_4097 PF00512 His Kinase A (phospho-acceptor) domain MC28_4098 PF00486 Transcriptional regulatory protein, C terminal MC28_4098 PF00072 Response regulator receiver domain MC28_4104 PF00781 Diacylglycerol kinase catalytic domain MC28_4108 PF02687 FtsX-like permease family MC28_4109 PF00005 ABC transporter MC28_4111 PF00248 Aldo/keto reductase family MC28_4113 PF09335 SNARE associated Golgi protein MC28_4114 PF00398 Ribosomal RNA adenine dimethylase MC28_4115 PF02687 FtsX-like permease family MC28_4116 PF00005 ABC transporter MC28_4117 PF12833 Helix-turn-helix domain MC28_4117 PF06445 GyrI-like small molecule binding domain MC28_4120 PF07853 Protein of unknown function (DUF1648) MC28_4120 PF13630 SdpI/YhfL protein family MC28_4121 PF01022 Bacterial regulatory protein, arsR family MC28_4124 PF08281 Sigma-70, region 4 MC28_4124 PF04542 Sigma-70 region 2 MC28_4125 PF00072 Response regulator receiver domain MC28_4125 PF00486 Transcriptional regulatory protein, C terminal MC28_4126 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_4127 PF02687 FtsX-like permease family MC28_4128 PF02687 FtsX-like permease family MC28_4129 PF00005 ABC transporter MC28_4130 PF02687 FtsX-like permease family MC28_4132 PF02447 GntP family permease MC28_4135 PF07071 KDGP aldolase MC28_4136 PF03841 L-seryl-tRNA selenium transferase MC28_4137 PF01979 Amidohydrolase family MC28_4138 PF02557 D-alanyl-D-alanine carboxypeptidase MC28_4139 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_4139 PF00512 His Kinase A (phospho-acceptor) domain MC28_4140 PF00486 Transcriptional regulatory protein, C terminal MC28_4140 PF00072 Response regulator receiver domain MC28_4141 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MC28_4141 PF13378 Enolase C-terminal domain-like MC28_4142 PF13193 AMP-binding enzyme C-terminal domain MC28_4142 PF00501 AMP-binding enzyme MC28_4143 PF00378 Enoyl-CoA hydratase/isomerase MC28_4145 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MC28_4145 PF16582 Middle domain of thiamine pyrophosphate MC28_4145 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MC28_4146 PF00425 chorismate binding enzyme MC28_4147 PF01040 UbiA prenyltransferase family MC28_4148 PF01258 Prokaryotic dksA/traR C4-type zinc finger MC28_4149 PF00313 'Cold-shock' DNA-binding domain MC28_4153 PF00343 Carbohydrate phosphorylase MC28_4154 PF08323 Starch synthase catalytic domain MC28_4154 PF00534 Glycosyl transferases group 1 MC28_4155 PF00483 Nucleotidyl transferase MC28_4157 PF02806 Alpha amylase, C-terminal all-beta domain MC28_4157 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) MC28_4157 PF00128 Alpha amylase, catalytic domain MC28_4159 PF02225 PA domain MC28_4159 PF05922 Peptidase inhibitor I9 MC28_4159 PF00082 Subtilase family MC28_4159 PF13860 FlgD Ig-like domain MC28_4160 PF00056 lactate/malate dehydrogenase, NAD binding domain MC28_4160 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain MC28_4163 PF02308 MgtC family MC28_4164 PF02254 TrkA-N domain MC28_4164 PF07885 Ion channel MC28_4165 PF08868 YugN-like family MC28_4166 PF00342 Phosphoglucose isomerase MC28_4167 PF04070 Domain of unknown function (DUF378) MC28_4168 PF00575 S1 RNA binding domain MC28_4169 PF00155 Aminotransferase class I and II MC28_4170 PF01037 Lrp/AsnC ligand binding domain MC28_4171 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain MC28_4171 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain MC28_4172 PF00561 alpha/beta hydrolase fold MC28_4172 PF08386 TAP-like protein MC28_4174 PF00155 Aminotransferase class I and II MC28_4177 PF08810 Kinase associated protein B MC28_4180 PF03600 Citrate transporter MC28_4183 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MC28_4183 PF03129 Anticodon binding domain MC28_4184 PF03061 Thioesterase superfamily MC28_4186 PF02632 BioY family MC28_4187 PF00483 Nucleotidyl transferase MC28_4188 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MC28_4188 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MC28_4188 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MC28_4188 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MC28_4189 PF10372 Bacterial membrane-spanning protein N-terminus MC28_4189 PF02457 DisA bacterial checkpoint controller nucleotide-binding MC28_4190 PF00883 Cytosol aminopeptidase family, catalytic domain MC28_4190 PF02789 Cytosol aminopeptidase family, N-terminal domain MC28_4191 PF06725 3D domain MC28_4193 PF13344 Haloacid dehalogenase-like hydrolase MC28_4193 PF00293 NUDIX domain MC28_4194 PF07992 Pyridine nucleotide-disulphide oxidoreductase MC28_4196 PF06445 GyrI-like small molecule binding domain MC28_4199 PF04463 Protein of unknown function (DUF523) MC28_4203 PF01521 Iron-sulphur cluster biosynthesis MC28_4204 PF01678 Diaminopimelate epimerase MC28_4205 PF07293 Protein of unknown function (DUF1450) MC28_4206 PF07992 Pyridine nucleotide-disulphide oxidoreductase MC28_4207 PF00005 ABC transporter MC28_4207 PF00664 ABC transporter transmembrane region MC28_4207 PF03412 Peptidase C39 family MC28_4208 PF03649 Uncharacterised protein family (UPF0014) MC28_4209 PF08274 PhnA Zinc-Ribbon MC28_4209 PF03831 PhnA domain MC28_4214 PF07315 Protein of unknown function (DUF1462) MC28_4218 PF04608 Phosphatidylglycerophosphatase A MC28_4221 PF00005 ABC transporter MC28_4221 PF12704 MacB-like periplasmic core domain MC28_4221 PF02687 FtsX-like permease family MC28_4222 PF02525 Flavodoxin-like fold MC28_4224 PF13344 Haloacid dehalogenase-like hydrolase MC28_4226 PF01934 Protein of unknown function DUF86 MC28_4227 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded MC28_4232 PF09580 Sporulation lipoprotein YhcN/YlaJ (Spore_YhcN_YlaJ) MC28_4233 PF13411 MerR HTH family regulatory protein MC28_4233 PF07739 TipAS antibiotic-recognition domain MC28_4234 PF10086 YhfC intramembrane metalloprotease MC28_4238 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family MC28_4238 PF04055 Radical SAM superfamily MC28_4239 PF01551 Peptidase family M23 MC28_4241 PF08827 Domain of unknown function (DUF1805) MC28_4242 PF02872 5'-nucleotidase, C-terminal domain MC28_4243 PF01458 Uncharacterized protein family (UPF0051) MC28_4244 PF01592 NifU-like N terminal domain MC28_4245 PF00266 Aminotransferase class-V MC28_4246 PF01458 Uncharacterized protein family (UPF0051) MC28_4247 PF00005 ABC transporter MC28_4248 PF03180 NLPA lipoprotein MC28_4249 PF03180 NLPA lipoprotein MC28_4251 PF00005 ABC transporter MC28_4251 PF09383 NIL domain MC28_4254 PF00085 Thioredoxin MC28_4255 PF01751 Toprim domain MC28_4256 PF01597 Glycine cleavage H-protein MC28_4257 PF03960 ArsC family MC28_4265 PF00056 lactate/malate dehydrogenase, NAD binding domain MC28_4265 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain MC28_4270 PF00753 Metallo-beta-lactamase superfamily MC28_4271 PF02770 Acyl-CoA dehydrogenase, middle domain MC28_4271 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MC28_4271 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MC28_4273 PF02803 Thiolase, C-terminal domain MC28_4273 PF00108 Thiolase, N-terminal domain MC28_4274 PF00378 Enoyl-CoA hydratase/isomerase MC28_4274 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain MC28_4274 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MC28_4275 PF14115 YuzL-like protein MC28_4276 PF00768 D-alanyl-D-alanine carboxypeptidase MC28_4276 PF07943 Penicillin-binding protein 5, C-terminal domain MC28_4277 PF01619 Proline dehydrogenase MC28_4278 PF10835 Protein of unknown function (DUF2573) MC28_4279 PF01910 Thiamine-binding protein MC28_4280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MC28_4280 PF00672 HAMP domain MC28_4280 PF02743 Cache domain MC28_4283 PF07690 Major Facilitator Superfamily MC28_4284 PF13520 Amino acid permease MC28_4286 PF02096 60Kd inner membrane protein MC28_4288 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 MC28_4288 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) MC28_4294 PF09335 SNARE associated Golgi protein MC28_4296 PF17969 L,D-transpeptidase C-terminal domain MC28_4296 PF03734 L,D-transpeptidase catalytic domain MC28_4297 PF00072 Response regulator receiver domain MC28_4297 PF00486 Transcriptional regulatory protein, C terminal MC28_4298 PF16736 Single Cache-like MC28_4298 PF00989 PAS fold MC28_4298 PF00512 His Kinase A (phospho-acceptor) domain MC28_4298 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_4300 PF08264 Anticodon-binding domain of tRNA MC28_4300 PF09334 tRNA synthetases class I (M) MC28_4302 PF00672 HAMP domain MC28_4302 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MC28_4302 PF02743 Cache domain MC28_4303 PF02743 Cache domain MC28_4303 PF00672 HAMP domain MC28_4303 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MC28_4304 PF01883 Iron-sulfur cluster assembly protein MC28_4305 PF02868 Thermolysin metallopeptidase, alpha-helical domain MC28_4305 PF01447 Thermolysin metallopeptidase, catalytic domain MC28_4305 PF03413 Peptidase propeptide and YPEB domain MC28_4305 PF07504 Fungalysin/Thermolysin Propeptide Motif MC28_4306 PF17954 Quercetinase C-terminal cupin domain MC28_4306 PF02678 Pirin MC28_4307 PF01047 MarR family MC28_4309 PF09335 SNARE associated Golgi protein MC28_4310 PF00999 Sodium/hydrogen exchanger family MC28_4311 PF02080 TrkA-C domain MC28_4312 PF01235 Sodium:alanine symporter family MC28_4313 PF00210 Ferritin-like domain MC28_4316 PF03641 Possible lysine decarboxylase MC28_4318 PF00210 Ferritin-like domain MC28_4319 PF04235 Protein of unknown function (DUF418) MC28_4320 PF01773 Na+ dependent nucleoside transporter N-terminus MC28_4320 PF07662 Na+ dependent nucleoside transporter C-terminus MC28_4321 PF01773 Na+ dependent nucleoside transporter N-terminus MC28_4321 PF07662 Na+ dependent nucleoside transporter C-terminus MC28_4322 PF01235 Sodium:alanine symporter family MC28_4323 PF01235 Sodium:alanine symporter family MC28_4327 PF00248 Aldo/keto reductase family MC28_4328 PF07690 Major Facilitator Superfamily MC28_4329 PF01638 HxlR-like helix-turn-helix MC28_4330 PF07849 Protein of unknown function (DUF1641) MC28_4331 PF07992 Pyridine nucleotide-disulphide oxidoreductase MC28_4332 PF00579 tRNA synthetases class I (W and Y) MC28_4332 PF01479 S4 domain MC28_4333 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain MC28_4333 PF01565 FAD binding domain MC28_4335 PF00672 HAMP domain MC28_4335 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MC28_4335 PF17202 Single cache domain 3 MC28_4337 PF02537 CrcB-like protein, Camphor Resistance (CrcB) MC28_4338 PF02537 CrcB-like protein, Camphor Resistance (CrcB) MC28_4342 PF12848 ABC transporter MC28_4342 PF00005 ABC transporter MC28_4343 PF13302 Acetyltransferase (GNAT) domain MC28_4344 PF06146 Phosphate-starvation-inducible E MC28_4347 PF00857 Isochorismatase family MC28_4348 PF01037 Lrp/AsnC ligand binding domain MC28_4350 PF01037 Lrp/AsnC ligand binding domain MC28_4351 PF00484 Carbonic anhydrase MC28_4352 PF02560 Cyanate lyase C-terminal domain MC28_4353 PF00860 Permease family MC28_4355 PF00005 ABC transporter MC28_4356 PF01032 FecCD transport family MC28_4357 PF01032 FecCD transport family MC28_4359 PF00072 Response regulator receiver domain MC28_4359 PF00486 Transcriptional regulatory protein, C terminal MC28_4360 PF01668 SmpB protein MC28_4361 PF00773 RNB domain MC28_4361 PF08206 Ribonuclease B OB domain MC28_4361 PF17876 Cold shock domain MC28_4361 PF00575 S1 RNA binding domain MC28_4363 PF03840 Preprotein translocase SecG subunit MC28_4364 PF04172 LrgB-like family MC28_4365 PF03788 LrgA family MC28_4367 PF03952 Enolase, N-terminal domain MC28_4367 PF00113 Enolase, C-terminal TIM barrel domain MC28_4368 PF06415 BPG-independent PGAM N-terminus (iPGM_N) MC28_4368 PF01676 Metalloenzyme superfamily MC28_4369 PF00121 Triosephosphate isomerase MC28_4370 PF00162 Phosphoglycerate kinase MC28_4371 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain MC28_4371 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MC28_4372 PF04198 Putative sugar-binding domain MC28_4374 PF00309 Sigma-54 factor, Activator interacting domain (AID) MC28_4374 PF04552 Sigma-54, DNA binding domain MC28_4374 PF04963 Sigma-54 factor, core binding domain MC28_4379 PF03862 SpoVAC/SpoVAEB sporulation membrane protein MC28_4380 PF07451 Stage V sporulation protein AD (SpoVAD) MC28_4381 PF03862 SpoVAC/SpoVAEB sporulation membrane protein MC28_4383 PF04239 Protein of unknown function (DUF421) MC28_4384 PF00574 Clp protease MC28_4386 PF00381 PTS HPr component phosphorylation site MC28_4387 PF02650 WhiA C-terminal HTH domain MC28_4387 PF14527 WhiA LAGLIDADG-like domain MC28_4387 PF10298 WhiA N-terminal LAGLIDADG-like domain MC28_4388 PF01933 Uncharacterised protein family UPF0052 MC28_4389 PF03668 P-loop ATPase protein family MC28_4390 PF00293 NUDIX domain MC28_4394 PF14602 Hexapeptide repeat of succinyl-transferase MC28_4395 PF13419 Haloacid dehalogenase-like hydrolase MC28_4396 PF01790 Prolipoprotein diacylglyceryl transferase MC28_4397 PF02603 HPr Serine kinase N terminus MC28_4397 PF07475 HPr Serine kinase C-terminal domain MC28_4399 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV MC28_4401 PF00005 ABC transporter MC28_4401 PF17755 UvrA DNA-binding domain MC28_4401 PF17760 UvrA interaction domain MC28_4402 PF12344 Ultra-violet resistance protein B MC28_4402 PF02151 UvrB/uvrC motif MC28_4402 PF04851 Type III restriction enzyme, res subunit MC28_4402 PF17757 UvrB interaction domain MC28_4402 PF00271 Helicase conserved C-terminal domain MC28_4404 PF07739 TipAS antibiotic-recognition domain MC28_4404 PF13411 MerR HTH family regulatory protein MC28_4407 PF03601 Conserved hypothetical protein 698 MC28_4408 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MC28_4408 PF03466 LysR substrate binding domain MC28_4409 PF09278 MerR, DNA binding MC28_4409 PF00376 MerR family regulatory protein MC28_4412 PF01906 Putative heavy-metal-binding MC28_4414 PF17820 PDZ domain MC28_4415 PF01471 Putative peptidoglycan binding domain MC28_4415 PF03572 Peptidase family S41 MC28_4415 PF17820 PDZ domain MC28_4416 PF18075 FtsX extracellular domain MC28_4416 PF02687 FtsX-like permease family MC28_4417 PF00005 ABC transporter MC28_4418 PF13442 Cytochrome C oxidase, cbb3-type, subunit III MC28_4422 PF01043 SecA preprotein cross-linking domain MC28_4422 PF07517 SecA DEAD-like domain MC28_4422 PF02810 SEC-C motif MC28_4422 PF07516 SecA Wing and Scaffold domain MC28_4423 PF16321 Sigma 54 modulation/S30EA ribosomal protein C terminus MC28_4423 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein MC28_4425 PF00313 'Cold-shock' DNA-binding domain MC28_4427 PF04851 Type III restriction enzyme, res subunit MC28_4427 PF00271 Helicase conserved C-terminal domain MC28_4428 PF00877 NlpC/P60 family MC28_4428 PF01476 LysM domain MC28_4430 PF02645 Uncharacterised protein, DegV family COG1307 MC28_4431 PF09186 Domain of unknown function (DUF1949) MC28_4431 PF01205 Uncharacterized protein family UPF0029 MC28_4432 PF03816 Cell envelope-related transcriptional attenuator domain MC28_4433 PF02350 UDP-N-acetylglucosamine 2-epimerase MC28_4434 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MC28_4434 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain MC28_4434 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain MC28_4435 PF00953 Glycosyl transferase family 4 MC28_4437 PF03610 PTS system fructose IIA component MC28_4437 PF00158 Sigma-54 interaction domain MC28_4437 PF00874 PRD domain MC28_4440 PF04794 YdjC-like protein MC28_4441 PF11975 Family 4 glycosyl hydrolase C-terminal domain MC28_4441 PF02056 Family 4 glycosyl hydrolase MC28_4442 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit MC28_4443 PF02378 Phosphotransferase system, EIIC MC28_4447 PF02675 S-adenosylmethionine decarboxylase MC28_4448 PF02255 PTS system, Lactose/Cellobiose specific IIA subunit MC28_4449 PF02378 Phosphotransferase system, EIIC MC28_4450 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit MC28_4451 PF00375 Sodium:dicarboxylate symporter family MC28_4455 PF03466 LysR substrate binding domain MC28_4455 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MC28_4458 PF01654 Cytochrome bd terminal oxidase subunit I MC28_4459 PF02322 Cytochrome bd terminal oxidase subunit II MC28_4460 PF02040 Arsenical pump membrane protein MC28_4461 PF01964 Radical SAM ThiC family MC28_4461 PF13667 ThiC-associated domain MC28_4462 PF02652 L-lactate permease MC28_4464 PF09988 Uncharacterized metal-binding protein (DUF2227) MC28_4466 PF00884 Sulfatase MC28_4467 PF01063 Amino-transferase class IV MC28_4469 PF00877 NlpC/P60 family MC28_4469 PF01476 LysM domain MC28_4470 PF07662 Na+ dependent nucleoside transporter C-terminus MC28_4470 PF01773 Na+ dependent nucleoside transporter N-terminus MC28_4473 PF02028 BCCT, betaine/carnitine/choline family transporter MC28_4475 PF01476 LysM domain MC28_4475 PF06725 3D domain MC28_4477 PF04434 SWIM zinc finger MC28_4478 PF00176 SNF2 family N-terminal domain MC28_4478 PF12419 SNF2 Helicase protein MC28_4478 PF00271 Helicase conserved C-terminal domain MC28_4485 PF04893 Yip1 domain MC28_4486 PF02687 FtsX-like permease family MC28_4486 PF12704 MacB-like periplasmic core domain MC28_4487 PF00005 ABC transporter MC28_4489 PF07690 Major Facilitator Superfamily MC28_4492 PF00672 HAMP domain MC28_4492 PF00512 His Kinase A (phospho-acceptor) domain MC28_4492 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_4493 PF00486 Transcriptional regulatory protein, C terminal MC28_4493 PF00072 Response regulator receiver domain MC28_4494 PF16363 GDP-mannose 4,6 dehydratase MC28_4495 PF12804 MobA-like NTP transferase domain MC28_4496 PF00892 EamA-like transporter family MC28_4498 PF04991 LicD family MC28_4501 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain MC28_4501 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain MC28_4501 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MC28_4502 PF00534 Glycosyl transferases group 1 MC28_4503 PF00535 Glycosyl transferase family 2 MC28_4506 PF13439 Glycosyltransferase Family 4 MC28_4506 PF00534 Glycosyl transferases group 1 MC28_4510 PF00483 Nucleotidyl transferase MC28_4512 PF13614 AAA domain MC28_4513 PF02706 Chain length determinant protein MC28_4513 PF13807 G-rich domain on putative tyrosine kinase MC28_4514 PF13614 AAA domain MC28_4515 PF07977 FabA-like domain MC28_4517 PF12116 Stage III sporulation protein D MC28_4519 PF01551 Peptidase family M23 MC28_4521 PF00005 ABC transporter MC28_4522 PF04397 LytTr DNA-binding domain MC28_4522 PF00072 Response regulator receiver domain MC28_4523 PF08486 Stage II sporulation protein MC28_4524 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) MC28_4526 PF06612 Protein of unknown function (DUF1146) MC28_4527 PF00361 Proton-conducting membrane transporter MC28_4528 PF00361 Proton-conducting membrane transporter MC28_4529 PF01010 NADH-dehyrogenase subunit F, TMs, (complex I) C-terminus MC28_4529 PF00361 Proton-conducting membrane transporter MC28_4529 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus MC28_4530 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L MC28_4531 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 MC28_4533 PF00146 NADH dehydrogenase MC28_4534 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit MC28_4535 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit MC28_4536 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit MC28_4537 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 MC28_4538 PF03707 Bacterial signalling protein N terminal repeat MC28_4538 PF00990 Diguanylate cyclase, GGDEF domain MC28_4538 PF00563 EAL domain MC28_4541 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain MC28_4541 PF00401 ATP synthase, Delta/Epsilon chain, long alpha-helix domain MC28_4542 PF02874 ATP synthase alpha/beta family, beta-barrel domain MC28_4542 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MC28_4543 PF00231 ATP synthase MC28_4545 PF00213 ATP synthase delta (OSCP) subunit MC28_4546 PF00430 ATP synthase B/B' CF(0) MC28_4547 PF00137 ATP synthase subunit C MC28_4548 PF00119 ATP synthase A chain MC28_4549 PF03899 ATP synthase I chain MC28_4553 PF00464 Serine hydroxymethyltransferase MC28_4554 PF04260 Protein of unknown function (DUF436) MC28_4555 PF02502 Ribose/Galactose Isomerase MC28_4557 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 MC28_4558 PF07681 DoxX MC28_4559 PF01613 Flavin reductase like domain MC28_4561 PF02659 Putative manganese efflux pump MC28_4562 PF03481 Putative GTP-binding controlling metal-binding MC28_4562 PF01300 Telomere recombination MC28_4564 PF09551 Stage II sporulation protein R (spore_II_R) MC28_4565 PF17827 PrmC N-terminal domain MC28_4565 PF13847 Methyltransferase domain MC28_4567 PF00265 Thymidine kinase MC28_4568 PF07498 Rho termination factor, N-terminal domain MC28_4568 PF07497 Rho termination factor, RNA-binding domain MC28_4568 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain MC28_4569 PF03320 Bacterial fructose-1,6-bisphosphatase, glpX-encoded MC28_4570 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) MC28_4571 PF01116 Fructose-bisphosphate aldolase class-II MC28_4573 PF10740 Domain of unknown function (DUF2529) MC28_4574 PF06418 CTP synthase N-terminus MC28_4574 PF00117 Glutamine amidotransferase class-I MC28_4575 PF05066 HB1, ASXL, restriction endonuclease HTH domain MC28_4577 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MC28_4577 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MC28_4577 PF02770 Acyl-CoA dehydrogenase, middle domain MC28_4578 PF00441 Acyl-CoA dehydrogenase, C-terminal domain MC28_4578 PF02770 Acyl-CoA dehydrogenase, middle domain MC28_4578 PF02771 Acyl-CoA dehydrogenase, N-terminal domain MC28_4579 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain MC28_4579 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain MC28_4580 PF02803 Thiolase, C-terminal domain MC28_4580 PF00108 Thiolase, N-terminal domain MC28_4581 PF13183 4Fe-4S dicluster domain MC28_4581 PF02754 Cysteine-rich domain MC28_4582 PF13091 PLD-like domain MC28_4583 PF03851 UV-endonuclease UvdE MC28_4584 PF00563 EAL domain MC28_4584 PF00990 Diguanylate cyclase, GGDEF domain MC28_4584 PF03707 Bacterial signalling protein N terminal repeat MC28_4587 PF03413 Peptidase propeptide and YPEB domain MC28_4587 PF07504 Fungalysin/Thermolysin Propeptide Motif MC28_4587 PF01447 Thermolysin metallopeptidase, catalytic domain MC28_4587 PF02868 Thermolysin metallopeptidase, alpha-helical domain MC28_4588 PF00072 Response regulator receiver domain MC28_4588 PF00196 Bacterial regulatory proteins, luxR family MC28_4589 PF07730 Histidine kinase MC28_4589 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_4591 PF00005 ABC transporter MC28_4592 PF00557 Metallopeptidase family M24 MC28_4594 PF04389 Peptidase family M28 MC28_4594 PF02225 PA domain MC28_4598 PF05746 DALR anticodon binding domain MC28_4598 PF00750 tRNA synthetases class I (R) MC28_4598 PF03485 Arginyl tRNA synthetase N terminal domain MC28_4599 PF09148 Domain of unknown function (DUF1934) MC28_4600 PF17676 LD-carboxypeptidase C-terminal domain MC28_4600 PF02016 LD-carboxypeptidase N-terminal domain MC28_4603 PF00491 Arginase family MC28_4605 PF07690 Major Facilitator Superfamily MC28_4606 PF13411 MerR HTH family regulatory protein MC28_4607 PF03009 Glycerophosphoryl diester phosphodiesterase family MC28_4608 PF00905 Penicillin binding protein transpeptidase domain MC28_4608 PF00912 Transglycosylase MC28_4609 PF08741 YwhD family MC28_4610 PF02163 Peptidase family M50 MC28_4611 PF01361 Tautomerase enzyme MC28_4612 PF01966 HD domain MC28_4613 PF01497 Periplasmic binding protein MC28_4614 PF00005 ABC transporter MC28_4615 PF01032 FecCD transport family MC28_4616 PF01032 FecCD transport family MC28_4619 PF03099 Biotin/lipoate A/B protein ligase family MC28_4620 PF01515 Phosphate acetyl/butaryl transferase MC28_4622 PF00768 D-alanyl-D-alanine carboxypeptidase MC28_4622 PF07943 Penicillin-binding protein 5, C-terminal domain MC28_4623 PF07486 Cell Wall Hydrolase MC28_4624 PF09671 Spore coat protein (Spore_GerQ) MC28_4625 PF04241 Protein of unknown function (DUF423) MC28_4627 PF02254 TrkA-N domain MC28_4627 PF07885 Ion channel MC28_4628 PF00860 Permease family MC28_4630 PF12823 Domain of unknown function (DUF3817) MC28_4631 PF03167 Uracil DNA glycosylase superfamily MC28_4632 PF12679 ABC-2 family transporter protein MC28_4633 PF00005 ABC transporter MC28_4634 PF13472 GDSL-like Lipase/Acylhydrolase family MC28_4635 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family MC28_4635 PF00356 Bacterial regulatory proteins, lacI family MC28_4637 PF01842 ACT domain MC28_4637 PF00742 Homoserine dehydrogenase MC28_4637 PF03447 Homoserine dehydrogenase, NAD binding domain MC28_4638 PF04204 Homoserine O-succinyltransferase MC28_4639 PF01053 Cys/Met metabolism PLP-dependent enzyme MC28_4641 PF13419 Haloacid dehalogenase-like hydrolase MC28_4642 PF00027 Cyclic nucleotide-binding domain MC28_4643 PF02525 Flavodoxin-like fold MC28_4644 PF00072 Response regulator receiver domain MC28_4644 PF00196 Bacterial regulatory proteins, luxR family MC28_4645 PF07730 Histidine kinase MC28_4645 PF13185 GAF domain MC28_4646 PF08543 Phosphomethylpyrimidine kinase MC28_4647 PF00990 Diguanylate cyclase, GGDEF domain MC28_4647 PF07694 5TMR of 5TMR-LYT MC28_4648 PF04328 Selenoprotein, putative MC28_4649 PF02554 Carbon starvation protein CstA MC28_4649 PF13722 5TM C-terminal transporter carbon starvation CstA MC28_4650 PF00072 Response regulator receiver domain MC28_4650 PF04397 LytTr DNA-binding domain MC28_4651 PF07690 Major Facilitator Superfamily MC28_4653 PF03808 Glycosyl transferase WecB/TagA/CpsF family MC28_4654 PF13439 Glycosyltransferase Family 4 MC28_4654 PF00534 Glycosyl transferases group 1 MC28_4656 PF03458 UPF0126 domain MC28_4657 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MC28_4659 PF03061 Thioesterase superfamily MC28_4661 PF00535 Glycosyl transferase family 2 MC28_4663 PF08361 MAATS-type transcriptional repressor, C-terminal region MC28_4663 PF00440 Bacterial regulatory proteins, tetR family MC28_4664 PF12848 ABC transporter MC28_4664 PF00005 ABC transporter MC28_4667 PF00535 Glycosyl transferase family 2 MC28_4668 PF00440 Bacterial regulatory proteins, tetR family MC28_4669 PF00873 AcrB/AcrD/AcrF family MC28_4670 PF01625 Peptide methionine sulfoxide reductase MC28_4670 PF01641 SelR domain MC28_4671 PF01594 AI-2E family transporter MC28_4672 PF04172 LrgB-like family MC28_4673 PF03788 LrgA family MC28_4674 PF00072 Response regulator receiver domain MC28_4674 PF04397 LytTr DNA-binding domain MC28_4675 PF07694 5TMR of 5TMR-LYT MC28_4675 PF13492 GAF domain MC28_4675 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_4675 PF06580 Histidine kinase MC28_4676 PF07690 Major Facilitator Superfamily MC28_4677 PF02028 BCCT, betaine/carnitine/choline family transporter MC28_4678 PF02898 Nitric oxide synthase, oxygenase domain MC28_4679 PF02777 Iron/manganese superoxide dismutases, C-terminal domain MC28_4679 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain MC28_4681 PF02293 AmiS/UreI family transporter MC28_4683 PF16363 GDP-mannose 4,6 dehydratase MC28_4684 PF03006 Haemolysin-III related MC28_4686 PF03880 DbpA RNA binding domain MC28_4686 PF00271 Helicase conserved C-terminal domain MC28_4686 PF00270 DEAD/DEAH box helicase MC28_4688 PF00478 IMP dehydrogenase / GMP reductase domain MC28_4689 PF01432 Peptidase family M3 MC28_4689 PF08439 Oligopeptidase F MC28_4691 PF02590 Predicted SPOUT methyltransferase MC28_4693 PF13180 PDZ domain MC28_4694 PF00753 Metallo-beta-lactamase superfamily MC28_4695 PF09648 YycH protein MC28_4697 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_4697 PF13426 PAS domain MC28_4697 PF00512 His Kinase A (phospho-acceptor) domain MC28_4697 PF00672 HAMP domain MC28_4698 PF00072 Response regulator receiver domain MC28_4698 PF00486 Transcriptional regulatory protein, C terminal MC28_4699 PF00709 Adenylosuccinate synthetase MC28_4700 PF03796 DnaB-like helicase C terminal domain MC28_4700 PF00772 DnaB-like helicase N terminal domain MC28_4701 PF03948 Ribosomal protein L9, C-terminal domain MC28_4701 PF01281 Ribosomal protein L9, N-terminal domain MC28_4702 PF01368 DHH family MC28_4702 PF02272 DHHA1 domain MC28_4703 PF09991 Predicted membrane protein (DUF2232) MC28_4704 PF01084 Ribosomal protein S18 MC28_4705 PF00436 Single-strand binding protein family MC28_4706 PF01250 Ribosomal protein S6 MC28_4707 PF01926 50S ribosome-binding GTPase MC28_4707 PF06071 Protein of unknown function (DUF933) MC28_4708 PF06107 Bacterial protein of unknown function (DUF951) MC28_4709 PF00924 Mechanosensitive ion channel MC28_4710 PF06866 Protein of unknown function (DUF1256) MC28_4711 PF17762 HTH domain found in ParB protein MC28_4711 PF02195 ParB-like nuclease domain MC28_4712 PF13614 AAA domain MC28_4713 PF02195 ParB-like nuclease domain MC28_4713 PF17762 HTH domain found in ParB protein MC28_4714 PF02527 rRNA small subunit methyltransferase G MC28_4715 PF01134 Glucose inhibited division protein A MC28_4715 PF13932 GidA associated domain MC28_4716 PF12631 MnmE helical domain MC28_4716 PF01926 50S ribosome-binding GTPase MC28_4716 PF10396 GTP-binding protein TrmE N-terminus MC28_4717 PF01424 R3H domain MC28_4717 PF14804 Jag N-terminus MC28_4718 PF02096 60Kd inner membrane protein MC28_4719 PF00825 Ribonuclease P MC28_4720 PF00468 Ribosomal protein L34 MC28_4721 PF00308 Bacterial dnaA protein MC28_4721 PF11638 DnaA N-terminal domain MC28_4721 PF08299 Bacterial dnaA protein helix-turn-helix MC28_4722 PF02767 DNA polymerase III beta subunit, central domain MC28_4722 PF00712 DNA polymerase III beta subunit, N-terminal domain MC28_4722 PF02768 DNA polymerase III beta subunit, C-terminal domain MC28_4724 PF02463 RecF/RecN/SMC N terminal domain MC28_4725 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_4725 PF01751 Toprim domain MC28_4725 PF00204 DNA gyrase B MC28_4725 PF00986 DNA gyrase B subunit, carboxyl terminus MC28_4726 PF03989 DNA gyrase C-terminal domain, beta-propeller MC28_4726 PF00521 DNA gyrase/topoisomerase IV, subunit A MC28_4727 PF14175 YaaC-like Protein MC28_4728 PF00478 IMP dehydrogenase / GMP reductase domain MC28_4728 PF00571 CBS domain MC28_4729 PF07943 Penicillin-binding protein 5, C-terminal domain MC28_4729 PF00768 D-alanyl-D-alanine carboxypeptidase MC28_4730 PF01680 SOR/SNZ family MC28_4731 PF01174 SNO glutamine amidotransferase family MC28_4732 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MC28_4732 PF02403 Seryl-tRNA synthetase N-terminal domain MC28_4734 PF01712 Deoxynucleoside kinase MC28_4735 PF01712 Deoxynucleoside kinase MC28_4736 PF00857 Isochorismatase family MC28_4737 PF14437 MafB19-like deaminase MC28_4738 PF12169 DNA polymerase III subunits gamma and tau domain III MC28_4739 PF02575 YbaB/EbfC DNA-binding family MC28_4740 PF13662 Toprim domain MC28_4740 PF02132 RecR protein MC28_4741 PF10704 Protein of unknown function (DUF2508) MC28_4742 PF07441 SigmaK-factor processing regulatory protein BofA MC28_4744 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain MC28_4744 PF01276 Orn/Lys/Arg decarboxylase, major domain MC28_4745 PF02223 Thymidylate kinase MC28_4746 PF09115 DNA polymerase III, delta subunit, C terminal MC28_4747 PF04468 PSP1 C-terminal conserved region MC28_4748 PF06156 Initiation control protein YabA MC28_4749 PF05175 Methyltransferase small domain MC28_4750 PF01541 GIY-YIG catalytic domain MC28_4751 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MC28_4752 PF18277 AbrB C-terminal domain MC28_4752 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin MC28_4753 PF01588 Putative tRNA binding domain MC28_4753 PF08264 Anticodon-binding domain of tRNA MC28_4753 PF09334 tRNA synthetases class I (M) MC28_4754 PF01026 TatD related DNase MC28_4755 PF13331 Domain of unknown function (DUF4093) MC28_4755 PF13662 Toprim domain MC28_4757 PF05582 YabG peptidase U57 MC28_4758 PF06257 Biofilm formation stimulator VEG MC28_4759 PF00269 Small, acid-soluble spore proteins, alpha/beta type MC28_4760 PF08544 GHMP kinases C terminal MC28_4760 PF00288 GHMP kinases N terminal domain MC28_4761 PF09182 Bacterial purine repressor, N-terminal MC28_4761 PF00156 Phosphoribosyl transferase domain MC28_4762 PF01042 Endoribonuclease L-PSP MC28_4763 PF04026 SpoVG MC28_4764 PF00483 Nucleotidyl transferase MC28_4764 PF00132 Bacterial transferase hexapeptide (six repeats) MC28_4765 PF14572 Phosphoribosyl synthetase-associated domain MC28_4765 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase MC28_4766 PF01195 Peptidyl-tRNA hydrolase MC28_4768 PF02559 CarD-like/TRCF domain MC28_4768 PF00271 Helicase conserved C-terminal domain MC28_4768 PF03461 TRCF domain MC28_4768 PF17757 UvrB interaction domain MC28_4768 PF00270 DEAD/DEAH box helicase MC28_4769 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin MC28_4769 PF15714 Stage V sporulation protein T C-terminal, transcription factor MC28_4770 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases MC28_4770 PF03819 MazG nucleotide pyrophosphohydrolase domain MC28_4771 PF01479 S4 domain MC28_4772 PF07873 YabP family MC28_4773 PF09578 Spore cortex protein YabQ (Spore_YabQ) MC28_4775 PF00575 S1 RNA binding domain MC28_4776 PF07228 Stage II sporulation protein E (SpoIIE) MC28_4777 PF11734 TilS substrate C-terminal domain MC28_4777 PF09179 TilS substrate binding domain MC28_4777 PF01171 PP-loop family MC28_4779 PF06480 FtsH Extracellular MC28_4779 PF17862 AAA+ lid domain MC28_4779 PF00004 ATPase family associated with various cellular activities (AAA) MC28_4779 PF01434 Peptidase family M41 MC28_4780 PF03309 Type III pantothenate kinase MC28_4781 PF01430 Hsp33 protein MC28_4782 PF00291 Pyridoxal-phosphate dependent enzyme MC28_4783 PF00425 chorismate binding enzyme MC28_4783 PF04715 Anthranilate synthase component I, N terminal region MC28_4784 PF00117 Glutamine amidotransferase class-I MC28_4785 PF01063 Amino-transferase class IV MC28_4786 PF00809 Pterin binding enzyme MC28_4787 PF02152 Dihydroneopterin aldolase MC28_4788 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) MC28_4789 PF01207 Dihydrouridine synthase (Dus) MC28_4790 PF01336 OB-fold nucleic acid binding domain MC28_4790 PF00152 tRNA synthetases class II (D, K and N) MC28_4791 PF05848 CtsR N-terminal HTH domain MC28_4791 PF17727 CtsR C-terminal dimerization domain MC28_4792 PF02151 UvrB/uvrC motif MC28_4793 PF00217 ATP:guanido phosphotransferase, C-terminal catalytic domain MC28_4794 PF10431 C-terminal, D2-small domain, of ClpB protein MC28_4794 PF00004 ATPase family associated with various cellular activities (AAA) MC28_4794 PF07724 AAA domain (Cdc48 subfamily) MC28_4794 PF02861 Clp amino terminal domain, pathogenicity island component MC28_4794 PF17871 AAA lid domain MC28_4795 PF18073 Rubredoxin metal binding domain MC28_4796 PF02457 DisA bacterial checkpoint controller nucleotide-binding MC28_4796 PF10635 DisA bacterial checkpoint controller linker region MC28_4798 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase MC28_4799 PF02542 YgbB family MC28_4800 PF00749 tRNA synthetases class I (E and Q), catalytic domain MC28_4801 PF06426 Serine acetyltransferase, N-terminal MC28_4801 PF00132 Bacterial transferase hexapeptide (six repeats) MC28_4802 PF01406 tRNA synthetases class I (C) catalytic domain MC28_4802 PF09190 DALR domain MC28_4803 PF00636 Ribonuclease III domain MC28_4804 PF00588 SpoU rRNA Methylase family MC28_4804 PF08032 RNA 2'-O ribose methyltransferase substrate binding MC28_4805 PF05991 YacP-like NYN domain MC28_4806 PF04542 Sigma-70 region 2 MC28_4806 PF08281 Sigma-70, region 4 MC28_4808 PF00467 KOW motif MC28_4808 PF02357 Transcription termination factor nusG MC28_4809 PF03946 Ribosomal protein L11, N-terminal domain MC28_4809 PF00298 Ribosomal protein L11, RNA binding domain MC28_4811 PF00466 Ribosomal protein L10 MC28_4813 PF05175 Methyltransferase small domain MC28_4814 PF04561 RNA polymerase Rpb2, domain 2 MC28_4814 PF04560 RNA polymerase Rpb2, domain 7 MC28_4814 PF00562 RNA polymerase Rpb2, domain 6 MC28_4814 PF10385 RNA polymerase beta subunit external 1 domain MC28_4814 PF04563 RNA polymerase beta subunit MC28_4814 PF04565 RNA polymerase Rpb2, domain 3 MC28_4815 PF04998 RNA polymerase Rpb1, domain 5 MC28_4815 PF05000 RNA polymerase Rpb1, domain 4 MC28_4815 PF04983 RNA polymerase Rpb1, domain 3 MC28_4815 PF00623 RNA polymerase Rpb1, domain 2 MC28_4815 PF04997 RNA polymerase Rpb1, domain 1 MC28_4816 PF01248 Ribosomal protein L7Ae/L30e/S12e/Gadd45 family MC28_4817 PF00164 Ribosomal protein S12/S23 MC28_4818 PF00177 Ribosomal protein S7p/S5e MC28_4819 PF03144 Elongation factor Tu domain 2 MC28_4819 PF14492 Elongation Factor G, domain II MC28_4819 PF00679 Elongation factor G C-terminus MC28_4819 PF03764 Elongation factor G, domain IV MC28_4819 PF00009 Elongation factor Tu GTP binding domain MC28_4820 PF00009 Elongation factor Tu GTP binding domain MC28_4820 PF03144 Elongation factor Tu domain 2 MC28_4820 PF03143 Elongation factor Tu C-terminal domain MC28_4821 PF00338 Ribosomal protein S10p/S20e MC28_4822 PF00297 Ribosomal protein L3 MC28_4823 PF00573 Ribosomal protein L4/L1 family MC28_4824 PF00276 Ribosomal protein L23 MC28_4825 PF03947 Ribosomal Proteins L2, C-terminal domain MC28_4825 PF00181 Ribosomal Proteins L2, RNA binding domain MC28_4826 PF00203 Ribosomal protein S19 MC28_4827 PF00237 Ribosomal protein L22p/L17e MC28_4828 PF07650 KH domain MC28_4828 PF00189 Ribosomal protein S3, C-terminal domain MC28_4829 PF00252 Ribosomal protein L16p/L10e MC28_4830 PF00831 Ribosomal L29 protein MC28_4832 PF00238 Ribosomal protein L14p/L23e MC28_4833 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 MC28_4833 PF00467 KOW motif MC28_4834 PF00673 ribosomal L5P family C-terminus MC28_4834 PF00281 Ribosomal protein L5 MC28_4835 PF00253 Ribosomal protein S14p/S29e MC28_4836 PF00410 Ribosomal protein S8 MC28_4837 PF00347 Ribosomal protein L6 MC28_4838 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast MC28_4839 PF00333 Ribosomal protein S5, N-terminal domain MC28_4839 PF03719 Ribosomal protein S5, C-terminal domain MC28_4841 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A MC28_4842 PF00344 SecY translocase MC28_4843 PF05191 Adenylate kinase, active site lid MC28_4844 PF00557 Metallopeptidase family M24 MC28_4845 PF01176 Translation initiation factor 1A / IF-1 MC28_4846 PF00444 Ribosomal protein L36 MC28_4847 PF00416 Ribosomal protein S13/S18 MC28_4848 PF00411 Ribosomal protein S11 MC28_4849 PF01000 RNA polymerase Rpb3/RpoA insert domain MC28_4849 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain MC28_4849 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain MC28_4850 PF01196 Ribosomal protein L17 MC28_4851 PF00005 ABC transporter MC28_4852 PF00005 ABC transporter MC28_4853 PF02361 Cobalt transport protein MC28_4854 PF01416 tRNA pseudouridine synthase MC28_4855 PF00572 Ribosomal protein L13 MC28_4856 PF00380 Ribosomal protein S9/S16 MC28_4858 PF01520 N-acetylmuramoyl-L-alanine amidase MC28_4859 PF10609 NUBPL iron-transfer P-loop NTPase MC28_4860 PF17898 Spore germination GerD central core domain MC28_4861 PF14089 KinB-signalling pathway activation in sporulation MC28_4862 PF01522 Polysaccharide deacetylase MC28_4864 PF02595 Glycerate kinase family MC28_4865 PF00491 Arginase family MC28_4866 PF02457 DisA bacterial checkpoint controller nucleotide-binding MC28_4867 PF07949 YbbR-like protein MC28_4868 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MC28_4868 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MC28_4868 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MC28_4868 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MC28_4869 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II MC28_4869 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III MC28_4869 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I MC28_4869 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain MC28_4870 PF01380 SIS domain MC28_4872 PF00326 Prolyl oligopeptidase family MC28_4872 PF00930 Dipeptidyl peptidase IV (DPP IV) N-terminal region MC28_4877 PF00005 ABC transporter MC28_4877 PF09383 NIL domain MC28_4878 PF03180 NLPA lipoprotein MC28_4881 PF01565 FAD binding domain MC28_4884 PF07690 Major Facilitator Superfamily MC28_4887 PF00528 Binding-protein-dependent transport system inner membrane component MC28_4888 PF12911 N-terminal TM domain of oligopeptide transport permease C MC28_4888 PF00528 Binding-protein-dependent transport system inner membrane component MC28_4889 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MC28_4889 PF00005 ABC transporter MC28_4891 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MC28_4893 PF12833 Helix-turn-helix domain MC28_4894 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MC28_4895 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MC28_4896 PF00248 Aldo/keto reductase family MC28_4897 PF14748 Pyrroline-5-carboxylate reductase dimerisation MC28_4897 PF03807 NADP oxidoreductase coenzyme F420-dependent MC28_4898 PF04973 Nicotinamide mononucleotide transporter MC28_4899 PF06800 Sugar transport protein MC28_4902 PF12728 Helix-turn-helix domain MC28_4902 PF12727 PBP superfamily domain MC28_4903 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MC28_4903 PF03466 LysR substrate binding domain MC28_4904 PF00892 EamA-like transporter family MC28_4905 PF14142 YrzO-like protein MC28_4906 PF00532 Periplasmic binding proteins and sugar binding domain of LacI family MC28_4906 PF00356 Bacterial regulatory proteins, lacI family MC28_4908 PF10035 Uncharacterized protein conserved in bacteria (DUF2179) MC28_4908 PF02588 Uncharacterised 5xTM membrane BCR, YitT family COG1284 MC28_4912 PF10096 Uncharacterized protein conserved in bacteria (DUF2334) MC28_4916 PF12848 ABC transporter MC28_4916 PF00005 ABC transporter MC28_4916 PF16326 ABC transporter C-terminal domain MC28_4918 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MC28_4919 PF00528 Binding-protein-dependent transport system inner membrane component MC28_4921 PF00005 ABC transporter MC28_4921 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MC28_4922 PF08352 Oligopeptide/dipeptide transporter, C-terminal region MC28_4922 PF00005 ABC transporter MC28_4929 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MC28_4930 PF01557 Fumarylacetoacetate (FAA) hydrolase family MC28_4932 PF13520 Amino acid permease MC28_4933 PF07690 Major Facilitator Superfamily MC28_4934 PF07478 D-ala D-ala ligase C-terminus MC28_4934 PF01820 D-ala D-ala ligase N-terminus MC28_4935 PF01225 Mur ligase family, catalytic domain MC28_4935 PF02875 Mur ligase family, glutamate ligase domain MC28_4935 PF08245 Mur ligase middle domain MC28_4936 PF00270 DEAD/DEAH box helicase MC28_4936 PF00271 Helicase conserved C-terminal domain MC28_4937 PF03851 UV-endonuclease UvdE MC28_4938 PF01694 Rhomboid family MC28_4939 PF01648 4'-phosphopantetheinyl transferase superfamily MC28_4941 PF01168 Alanine racemase, N-terminal domain MC28_4941 PF00842 Alanine racemase, C-terminal domain MC28_4942 PF01402 Ribbon-helix-helix protein, copG family MC28_4943 PF02452 PemK-like, MazF-like toxin of type II toxin-antitoxin system MC28_4944 PF16921 Tex protein YqgF-like domain MC28_4944 PF09371 Tex-like protein N-terminal domain MC28_4944 PF00575 S1 RNA binding domain MC28_4944 PF17674 HHH domain MC28_4945 PF10263 SprT-like family MC28_4945 PF17283 SprT-like zinc ribbon domain MC28_4946 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE MC28_4947 PF00814 Glycoprotease family MC28_4948 PF00583 Acetyltransferase (GNAT) family MC28_4949 PF00814 Glycoprotease family MC28_4950 PF12848 ABC transporter MC28_4950 PF16326 ABC transporter C-terminal domain MC28_4950 PF00005 ABC transporter MC28_4951 PF02629 CoA binding domain MC28_4951 PF06971 Putative DNA-binding protein N-terminus MC28_4953 PF02517 CPBP intramembrane metalloprotease MC28_4954 PF00166 Chaperonin 10 Kd subunit MC28_4957 PF02540 NAD synthase MC28_4957 PF00958 GMP synthase C terminal domain MC28_4957 PF00117 Glutamine amidotransferase class-I MC28_4965 PF18106 Rolling Circle replication initiation protein N-terminal domain MC28_4965 PF02486 Replication initiation factor MC28_4968 PF00149 Calcineurin-like phosphoesterase MC28_4970 PF00860 Permease family MC28_4971 PF00072 Response regulator receiver domain MC28_4971 PF00486 Transcriptional regulatory protein, C terminal MC28_4972 PF00989 PAS fold MC28_4972 PF16736 Single Cache-like MC28_4972 PF00512 His Kinase A (phospho-acceptor) domain MC28_4972 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_4974 PF01323 DSBA-like thioredoxin domain MC28_4975 PF05045 Rhamnan synthesis protein F MC28_4975 PF14307 Glycosyltransferase WbsX MC28_4977 PF08241 Methyltransferase domain MC28_4981 PF00535 Glycosyl transferase family 2 MC28_4982 PF00892 EamA-like transporter family MC28_4985 PF02673 Bacitracin resistance protein BacA MC28_4987 PF00005 ABC transporter MC28_4988 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_4988 PF00512 His Kinase A (phospho-acceptor) domain MC28_4989 PF00486 Transcriptional regulatory protein, C terminal MC28_4989 PF00072 Response regulator receiver domain MC28_4991 PF14307 Glycosyltransferase WbsX MC28_4991 PF05045 Rhamnan synthesis protein F MC28_4995 PF01370 NAD dependent epimerase/dehydratase family MC28_4997 PF00535 Glycosyl transferase family 2 MC28_4999 PF00892 EamA-like transporter family MC28_5003 PF02222 ATP-grasp domain MC28_5003 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain MC28_5004 PF00206 Lyase MC28_5004 PF10397 Adenylosuccinate lyase C-terminus MC28_5005 PF01259 SAICAR synthetase MC28_5006 PF02700 Phosphoribosylformylglycinamidine (FGAM) synthase MC28_5008 PF00586 AIR synthase related protein, N-terminal domain MC28_5008 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain MC28_5008 PF02769 AIR synthase related protein, C-terminal domain MC28_5009 PF00156 Phosphoribosyl transferase domain MC28_5011 PF02769 AIR synthase related protein, C-terminal domain MC28_5011 PF00586 AIR synthase related protein, N-terminal domain MC28_5012 PF00551 Formyl transferase MC28_5014 PF02844 Phosphoribosylglycinamide synthetase, N domain MC28_5014 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain MC28_5014 PF02843 Phosphoribosylglycinamide synthetase, C domain MC28_5019 PF01884 PcrB family MC28_5020 PF00580 UvrD/REP helicase N-terminal domain MC28_5020 PF13361 UvrD-like helicase C-terminal domain MC28_5021 PF03120 NAD-dependent DNA ligase OB-fold domain MC28_5021 PF01653 NAD-dependent DNA ligase adenylation domain MC28_5021 PF00533 BRCA1 C Terminus (BRCT) domain MC28_5021 PF03119 NAD-dependent DNA ligase C4 zinc finger domain MC28_5021 PF12826 Helix-hairpin-helix motif MC28_5022 PF07537 CamS sex pheromone cAM373 precursor MC28_5023 PF01925 Sulfite exporter TauE/SafE MC28_5024 PF00171 Aldehyde dehydrogenase family MC28_5025 PF00857 Isochorismatase family MC28_5026 PF00005 ABC transporter MC28_5026 PF09383 NIL domain MC28_5028 PF03180 NLPA lipoprotein MC28_5031 PF17886 HSP20-like domain found in ArsA MC28_5031 PF02374 Anion-transporting ATPase MC28_5032 PF01047 MarR family MC28_5033 PF05360 yiaA/B two helix domain MC28_5034 PF02686 Glu-tRNAGln amidotransferase C subunit MC28_5035 PF01425 Amidase MC28_5036 PF02934 GatB/GatE catalytic domain MC28_5036 PF02637 GatB domain MC28_5037 PF00781 Diacylglycerol kinase catalytic domain MC28_5038 PF13419 Haloacid dehalogenase-like hydrolase MC28_5039 PF00202 Aminotransferase class-III MC28_5040 PF00158 Sigma-54 interaction domain MC28_5041 PF00171 Aldehyde dehydrogenase family MC28_5042 PF00893 Small Multidrug Resistance protein MC28_5044 PF02073 Thermophilic metalloprotease (M29) MC28_5047 PF07670 Nucleoside recognition MC28_5047 PF07662 Na+ dependent nucleoside transporter C-terminus MC28_5047 PF01773 Na+ dependent nucleoside transporter N-terminus MC28_5048 PF01938 TRAM domain MC28_5048 PF05958 tRNA (Uracil-5-)-methyltransferase MC28_5048 PF13847 Methyltransferase domain MC28_5049 PF01207 Dihydrouridine synthase (Dus) MC28_5050 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_5050 PF13188 PAS domain MC28_5050 PF00512 His Kinase A (phospho-acceptor) domain MC28_5050 PF13426 PAS domain MC28_5050 PF00989 PAS fold MC28_5051 PF07308 Protein of unknown function (DUF1456) MC28_5054 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain MC28_5054 PF13378 Enolase C-terminal domain-like MC28_5057 PF07687 Peptidase dimerisation domain MC28_5057 PF01546 Peptidase family M20/M25/M40 MC28_5059 PF13192 Thioredoxin domain MC28_5059 PF07992 Pyridine nucleotide-disulphide oxidoreductase MC28_5060 PF00578 AhpC/TSA family MC28_5061 PF01636 Phosphotransferase enzyme family MC28_5063 PF00596 Class II Aldolase and Adducin N-terminal domain MC28_5064 PF01032 FecCD transport family MC28_5065 PF01032 FecCD transport family MC28_5066 PF01497 Periplasmic binding protein MC28_5069 PF12728 Helix-turn-helix domain MC28_5074 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_5074 PF13426 PAS domain MC28_5074 PF00989 PAS fold MC28_5074 PF13188 PAS domain MC28_5074 PF00512 His Kinase A (phospho-acceptor) domain MC28_5078 PF10127 RNA repair pathway DNA polymerase beta family MC28_5079 PF07690 Major Facilitator Superfamily MC28_5080 PF00355 Rieske [2Fe-2S] domain MC28_5080 PF01266 FAD dependent oxidoreductase MC28_5082 PF00528 Binding-protein-dependent transport system inner membrane component MC28_5083 PF00497 Bacterial extracellular solute-binding proteins, family 3 MC28_5084 PF00005 ABC transporter MC28_5085 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MC28_5085 PF00672 HAMP domain MC28_5085 PF12729 Four helix bundle sensory module for signal transduction MC28_5086 PF02863 Arginine repressor, C-terminal domain MC28_5086 PF01316 Arginine repressor, DNA binding domain MC28_5088 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain MC28_5088 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain MC28_5089 PF13520 Amino acid permease MC28_5090 PF00696 Amino acid kinase family MC28_5093 PF08031 Berberine and berberine like MC28_5093 PF01565 FAD binding domain MC28_5094 PF00128 Alpha amylase, catalytic domain MC28_5094 PF16657 Maltogenic Amylase, C-terminal domain MC28_5095 PF00367 phosphotransferase system, EIIB MC28_5095 PF00358 phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 1 MC28_5095 PF02378 Phosphotransferase system, EIIC MC28_5096 PF03372 Endonuclease/Exonuclease/phosphatase family MC28_5097 PF01061 ABC-2 type transporter MC28_5098 PF01751 Toprim domain MC28_5098 PF01131 DNA topoisomerase MC28_5099 PF02110 Hydroxyethylthiazole kinase family MC28_5100 PF02581 Thiamine monophosphate synthase MC28_5101 PF13291 ACT domain MC28_5101 PF00291 Pyridoxal-phosphate dependent enzyme MC28_5102 PF03605 Anaerobic c4-dicarboxylate membrane transporter MC28_5103 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MC28_5103 PF00672 HAMP domain MC28_5104 PF13193 AMP-binding enzyme C-terminal domain MC28_5104 PF00668 Condensation domain MC28_5104 PF07993 Male sterility protein MC28_5104 PF00550 Phosphopantetheine attachment site MC28_5104 PF00501 AMP-binding enzyme MC28_5105 PF01910 Thiamine-binding protein MC28_5106 PF00528 Binding-protein-dependent transport system inner membrane component MC28_5108 PF00005 ABC transporter MC28_5109 PF00704 Glycosyl hydrolases family 18 MC28_5109 PF00041 Fibronectin type III domain MC28_5114 PF00440 Bacterial regulatory proteins, tetR family MC28_5114 PF08360 QacR-like protein, C-terminal region MC28_5117 PF11700 Vacuole effluxer Atg22 like MC28_5120 PF03129 Anticodon binding domain MC28_5120 PF09180 Prolyl-tRNA synthetase, C-terminal MC28_5120 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) MC28_5122 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase MC28_5122 PF05036 Sporulation related domain MC28_5122 PF08239 Bacterial SH3 domain MC28_5123 PF00480 ROK family MC28_5124 PF02342 TerD domain MC28_5125 PF02342 TerD domain MC28_5126 PF02342 TerD domain MC28_5127 PF03741 Integral membrane protein TerC family MC28_5128 PF14266 Putative component of 'biosynthetic module' MC28_5129 PF05816 Toxic anion resistance protein (TelA) MC28_5130 PF00689 Cation transporting ATPase, C-terminus MC28_5130 PF00690 Cation transporter/ATPase, N-terminus MC28_5131 PF06569 Protein of unknown function (DUF1128) MC28_5132 PF01451 Low molecular weight phosphotyrosine protein phosphatase MC28_5134 PF03631 Virulence factor BrkB MC28_5136 PF00892 EamA-like transporter family MC28_5138 PF10502 Signal peptidase, peptidase S26 MC28_5140 PF09335 SNARE associated Golgi protein MC28_5143 PF16242 Pyridoxamine 5'-phosphate oxidase like MC28_5144 PF01699 Sodium/calcium exchanger protein MC28_5145 PF14167 YfkD-like protein MC28_5146 PF08756 YfkB-like domain MC28_5146 PF04055 Radical SAM superfamily MC28_5148 PF05683 Fumarase C-terminus MC28_5148 PF05681 Fumarate hydratase (Fumerase) MC28_5149 PF01522 Polysaccharide deacetylase MC28_5150 PF00730 HhH-GPD superfamily base excision DNA repair protein MC28_5151 PF01938 TRAM domain MC28_5151 PF05958 tRNA (Uracil-5-)-methyltransferase MC28_5152 PF00589 Phage integrase family MC28_5152 PF14659 Phage integrase, N-terminal SAM-like domain MC28_5166 PF01695 IstB-like ATP binding protein MC28_5185 PF00589 Phage integrase family MC28_5195 PF00574 Clp protease MC28_5208 PF01661 Macro domain MC28_5212 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase MC28_5212 PF13457 GW (Gly-Tryp) dipeptide domain MC28_5215 PF01416 tRNA pseudouridine synthase MC28_5217 PF00158 Sigma-54 interaction domain MC28_5217 PF13426 PAS domain MC28_5217 PF02954 Bacterial regulatory protein, Fis family MC28_5219 PF00324 Amino acid permease MC28_5220 PF07687 Peptidase dimerisation domain MC28_5220 PF01546 Peptidase family M20/M25/M40 MC28_5224 PF04960 Glutaminase MC28_5226 PF00367 phosphotransferase system, EIIB MC28_5226 PF02378 Phosphotransferase system, EIIC MC28_5227 PF00144 Beta-lactamase MC28_5231 PF00535 Glycosyl transferase family 2 MC28_5232 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MC28_5232 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain MC28_5232 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain MC28_5233 PF01370 NAD dependent epimerase/dehydratase family MC28_5233 PF02911 Formyl transferase, C-terminal domain MC28_5233 PF00551 Formyl transferase MC28_5234 PF00535 Glycosyl transferase family 2 MC28_5235 PF02901 Pyruvate formate lyase-like MC28_5235 PF01228 Glycine radical MC28_5236 PF04055 Radical SAM superfamily MC28_5237 PF04101 Glycosyltransferase family 28 C-terminal domain MC28_5237 PF06925 Monogalactosyldiacylglycerol (MGDG) synthase MC28_5241 PF08338 Domain of unknown function (DUF1731) MC28_5241 PF01370 NAD dependent epimerase/dehydratase family MC28_5242 PF02631 RecX family MC28_5244 PF08176 Small acid-soluble spore protein K family MC28_5245 PF14043 WVELL protein MC28_5246 PF04307 LexA-binding, inner membrane-associated putative hydrolase MC28_5247 PF14815 NUDIX domain MC28_5247 PF00730 HhH-GPD superfamily base excision DNA repair protein MC28_5249 PF04259 Small, acid-soluble spore protein, gamma-type MC28_5250 PF14182 YgaB-like protein MC28_5252 PF00005 ABC transporter MC28_5252 PF00664 ABC transporter transmembrane region MC28_5253 PF06081 Aromatic acid exporter family member 1 MC28_5254 PF04898 Glutamate synthase central domain MC28_5254 PF00310 Glutamine amidotransferases class-II MC28_5254 PF01493 GXGXG motif MC28_5254 PF01645 Conserved region in glutamate synthase MC28_5256 PF00005 ABC transporter MC28_5259 PF07885 Ion channel MC28_5260 PF00578 AhpC/TSA family MC28_5261 PF01475 Ferric uptake regulator family MC28_5263 PF11023 Zinc-ribbon containing domain MC28_5265 PF01709 Transcriptional regulator MC28_5266 PF00293 NUDIX domain MC28_5266 PF13344 Haloacid dehalogenase-like hydrolase MC28_5267 PF00912 Transglycosylase MC28_5267 PF00905 Penicillin binding protein transpeptidase domain MC28_5268 PF13462 Thioredoxin MC28_5269 PF08331 Domain of unknown function (DUF1730) MC28_5270 PF12671 Putative amidase domain MC28_5272 PF00990 Diguanylate cyclase, GGDEF domain MC28_5272 PF00498 FHA domain MC28_5272 PF00563 EAL domain MC28_5273 PF06798 PrkA serine protein kinase C-terminal domain MC28_5273 PF08298 PrkA AAA domain MC28_5277 PF18496 Collagenase G catalytic helper subdomain MC28_5277 PF01752 Collagenase MC28_5277 PF08453 Peptidase family M9 N-terminal MC28_5279 PF15975 Flotillin MC28_5279 PF01145 SPFH domain / Band 7 family MC28_5280 PF00672 HAMP domain MC28_5280 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MC28_5280 PF02743 Cache domain MC28_5281 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain MC28_5281 PF17203 Single cache domain 3 MC28_5281 PF00989 PAS fold MC28_5281 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_5282 PF00072 Response regulator receiver domain MC28_5282 PF12431 Transcriptional regulator MC28_5283 PF03600 Citrate transporter MC28_5288 PF04309 Glycerol-3-phosphate responsive antiterminator MC28_5289 PF00005 ABC transporter MC28_5289 PF17912 MalK OB fold domain MC28_5292 PF13416 Bacterial extracellular solute-binding protein MC28_5294 PF00072 Response regulator receiver domain MC28_5294 PF00486 Transcriptional regulatory protein, C terminal MC28_5295 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_5295 PF00512 His Kinase A (phospho-acceptor) domain MC28_5297 PF13529 Peptidase_C39 like family MC28_5298 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MC28_5298 PF00672 HAMP domain MC28_5298 PF02743 Cache domain MC28_5299 PF14689 Sensor_kinase_SpoOB-type, alpha-helical domain MC28_5299 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_5299 PF00989 PAS fold MC28_5299 PF17203 Single cache domain 3 MC28_5300 PF00072 Response regulator receiver domain MC28_5301 PF03390 2-hydroxycarboxylate transporter family MC28_5302 PF03949 Malic enzyme, NAD binding domain MC28_5302 PF00390 Malic enzyme, N-terminal domain MC28_5304 PF00892 EamA-like transporter family MC28_5305 PF00392 Bacterial regulatory proteins, gntR family MC28_5305 PF00155 Aminotransferase class I and II MC28_5307 PF00672 HAMP domain MC28_5307 PF18698 Histidine kinase sensor domain MC28_5307 PF00512 His Kinase A (phospho-acceptor) domain MC28_5307 PF00989 PAS fold MC28_5307 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_5308 PF00072 Response regulator receiver domain MC28_5308 PF00486 Transcriptional regulatory protein, C terminal MC28_5311 PF00583 Acetyltransferase (GNAT) family MC28_5311 PF13508 Acetyltransferase (GNAT) domain MC28_5312 PF02634 FdhD/NarQ family MC28_5313 PF00384 Molybdopterin oxidoreductase MC28_5313 PF01568 Molydopterin dinucleotide binding domain MC28_5313 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region MC28_5313 PF00037 4Fe-4S binding domain MC28_5313 PF04879 Molybdopterin oxidoreductase Fe4S4 domain MC28_5314 PF07849 Protein of unknown function (DUF1641) MC28_5317 PF05222 Alanine dehydrogenase/PNT, N-terminal domain MC28_5317 PF01262 Alanine dehydrogenase/PNT, C-terminal domain MC28_5318 PF13520 Amino acid permease MC28_5321 PF01022 Bacterial regulatory protein, arsR family MC28_5322 PF00403 Heavy-metal-associated domain MC28_5323 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain MC28_5323 PF17956 Nicotinate phosphoribosyltransferase C-terminal domain MC28_5323 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family MC28_5326 PF03413 Peptidase propeptide and YPEB domain MC28_5326 PF01447 Thermolysin metallopeptidase, catalytic domain MC28_5326 PF02868 Thermolysin metallopeptidase, alpha-helical domain MC28_5326 PF07504 Fungalysin/Thermolysin Propeptide Motif MC28_5330 PF04294 VanW like protein MC28_5331 PF03816 Cell envelope-related transcriptional attenuator domain MC28_5332 PF01773 Na+ dependent nucleoside transporter N-terminus MC28_5332 PF07662 Na+ dependent nucleoside transporter C-terminus MC28_5333 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily MC28_5334 PF00571 CBS domain MC28_5334 PF01595 Cyclin M transmembrane N-terminal domain MC28_5334 PF03471 Transporter associated domain MC28_5335 PF00206 Lyase MC28_5335 PF10415 Fumarase C C-terminus MC28_5336 PF02652 L-lactate permease MC28_5337 PF01022 Bacterial regulatory protein, arsR family MC28_5338 PF08141 Small acid-soluble spore protein H family MC28_5339 PF00854 POT family MC28_5340 PF01497 Periplasmic binding protein MC28_5341 PF01032 FecCD transport family MC28_5342 PF01032 FecCD transport family MC28_5343 PF00005 ABC transporter MC28_5344 PF08241 Methyltransferase domain MC28_5345 PF00155 Aminotransferase class I and II MC28_5346 PF01370 NAD dependent epimerase/dehydratase family MC28_5347 PF13344 Haloacid dehalogenase-like hydrolase MC28_5347 PF00293 NUDIX domain MC28_5348 PF00092 von Willebrand factor type A domain MC28_5349 PF07728 AAA domain (dynein-related subfamily) MC28_5350 PF13396 Phospholipase_D-nuclease N-terminal MC28_5350 PF13091 PLD-like domain MC28_5353 PF00563 EAL domain MC28_5353 PF00990 Diguanylate cyclase, GGDEF domain MC28_5353 PF03707 Bacterial signalling protein N terminal repeat MC28_5354 PF13520 Amino acid permease MC28_5355 PF07702 UTRA domain MC28_5355 PF00392 Bacterial regulatory proteins, gntR family MC28_5356 PF02378 Phosphotransferase system, EIIC MC28_5356 PF00367 phosphotransferase system, EIIB MC28_5357 PF16657 Maltogenic Amylase, C-terminal domain MC28_5357 PF00128 Alpha amylase, catalytic domain MC28_5360 PF03323 Bacillus/Clostridium GerA spore germination protein MC28_5361 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_5361 PF07730 Histidine kinase MC28_5362 PF00196 Bacterial regulatory proteins, luxR family MC28_5362 PF00072 Response regulator receiver domain MC28_5363 PF13860 FlgD Ig-like domain MC28_5363 PF05922 Peptidase inhibitor I9 MC28_5363 PF02225 PA domain MC28_5363 PF00082 Subtilase family MC28_5364 PF12389 Camelysin metallo-endopeptidase MC28_5365 PF01636 Phosphotransferase enzyme family MC28_5366 PF01235 Sodium:alanine symporter family MC28_5367 PF00005 ABC transporter MC28_5368 PF00497 Bacterial extracellular solute-binding proteins, family 3 MC28_5369 PF00528 Binding-protein-dependent transport system inner membrane component MC28_5370 PF00528 Binding-protein-dependent transport system inner membrane component MC28_5371 PF00324 Amino acid permease MC28_5376 PF13280 WYL domain MC28_5376 PF08279 HTH domain MC28_5377 PF01872 RibD C-terminal domain MC28_5378 PF00989 PAS fold MC28_5378 PF00512 His Kinase A (phospho-acceptor) domain MC28_5378 PF18698 Histidine kinase sensor domain MC28_5378 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_5378 PF00672 HAMP domain MC28_5379 PF00072 Response regulator receiver domain MC28_5379 PF00486 Transcriptional regulatory protein, C terminal MC28_5381 PF00916 Sulfate permease family MC28_5381 PF01740 STAS domain MC28_5382 PF00582 Universal stress protein family MC28_5384 PF07690 Major Facilitator Superfamily MC28_5385 PF01047 MarR family MC28_5386 PF07690 Major Facilitator Superfamily MC28_5387 PF00356 Bacterial regulatory proteins, lacI family MC28_5388 PF00294 pfkB family carbohydrate kinase MC28_5389 PF05025 RbsD / FucU transport protein family MC28_5390 PF00005 ABC transporter MC28_5391 PF02653 Branched-chain amino acid transport system / permease component MC28_5392 PF13407 Periplasmic binding protein domain MC28_5393 PF00923 Transaldolase/Fructose-6-phosphate aldolase MC28_5394 PF05547 Immune inhibitor A peptidase M6 MC28_5399 PF00107 Zinc-binding dehydrogenase MC28_5399 PF08240 Alcohol dehydrogenase GroES-like domain MC28_5401 PF00882 Zinc dependent phospholipase C MC28_5402 PF03372 Endonuclease/Exonuclease/phosphatase family MC28_5407 PF02673 Bacitracin resistance protein BacA MC28_5409 PF06725 3D domain MC28_5409 PF01476 LysM domain MC28_5410 PF01381 Helix-turn-helix MC28_5412 PF04203 Sortase domain MC28_5414 PF00854 POT family MC28_5416 PF05525 Branched-chain amino acid transport protein MC28_5419 PF00324 Amino acid permease MC28_5420 PF00860 Permease family MC28_5424 PF02254 TrkA-N domain MC28_5424 PF00999 Sodium/hydrogen exchanger family MC28_5424 PF02080 TrkA-C domain MC28_5427 PF00115 Cytochrome C and Quinol oxidase polypeptide I MC28_5428 PF02790 Cytochrome C oxidase subunit II, transmembrane domain MC28_5429 PF00324 Amino acid permease MC28_5430 PF13529 Peptidase_C39 like family MC28_5431 PF07687 Peptidase dimerisation domain MC28_5431 PF01546 Peptidase family M20/M25/M40 MC28_5432 PF11755 Protein of unknown function (DUF3311) MC28_5433 PF00474 Sodium:solute symporter family MC28_5434 PF03323 Bacillus/Clostridium GerA spore germination protein MC28_5435 PF03845 Spore germination protein MC28_5436 PF05504 Spore germination B3/ GerAC like, C-terminal MC28_5438 PF07664 Ferrous iron transport protein B C terminus MC28_5438 PF17910 FeoB cytosolic helical domain MC28_5438 PF07670 Nucleoside recognition MC28_5438 PF02421 Ferrous iron transport protein B MC28_5439 PF07670 Nucleoside recognition MC28_5439 PF02421 Ferrous iron transport protein B MC28_5439 PF17910 FeoB cytosolic helical domain MC28_5439 PF07664 Ferrous iron transport protein B C terminus MC28_5440 PF07670 Nucleoside recognition MC28_5440 PF02421 Ferrous iron transport protein B MC28_5440 PF04023 FeoA domain MC28_5440 PF07664 Ferrous iron transport protein B C terminus MC28_5440 PF17910 FeoB cytosolic helical domain MC28_5441 PF12849 PBP superfamily domain MC28_5442 PF00528 Binding-protein-dependent transport system inner membrane component MC28_5443 PF00528 Binding-protein-dependent transport system inner membrane component MC28_5444 PF00873 AcrB/AcrD/AcrF family MC28_B02 PF14550 Putative phage serine protease XkdF MC28_B03 PF05065 Phage capsid family MC28_B23 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase MC28_B23 PF13457 GW (Gly-Tryp) dipeptide domain MC28_B27 PF18801 response regulator aspartate phosphatase H, N terminal MC28_B61 PF03838 Recombination protein U MC28_B67 PF00589 Phage integrase family MC28_B70 PF10668 Phage terminase small subunit MC28_B71 PF04466 Phage terminase large subunit MC28_B71 PF17288 Terminase RNAseH like domain MC28_C001 PF03944 delta endotoxin MC28_C001 PF03945 delta endotoxin, N-terminal domain MC28_C001 PF00555 delta endotoxin MC28_C001 PF17997 Insecticidal delta-endotoxin CryIA(c) domain 5 MC28_C002 PF13610 DDE domain MC28_C016 PF00226 DnaJ domain MC28_C016 PF01556 DnaJ C terminal domain MC28_C016 PF00684 DnaJ central domain MC28_C051 PF02027 RolB/RolC glucosidase family MC28_C051 PF01593 Flavin containing amine oxidoreductase MC28_C052 PF01609 Transposase DDE domain MC28_C054 PF18277 AbrB C-terminal domain MC28_C054 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin MC28_C055 PF17209 Hfq protein MC28_C056 PF00216 Bacterial DNA-binding protein MC28_C057 PF01022 Bacterial regulatory protein, arsR family MC28_C063 PF02796 Helix-turn-helix domain of resolvase MC28_C063 PF00239 Resolvase, N terminal domain MC28_C065 PF00388 Phosphatidylinositol-specific phospholipase C, X domain MC28_C066 PF02796 Helix-turn-helix domain of resolvase MC28_C066 PF00239 Resolvase, N terminal domain MC28_C067 PF03945 delta endotoxin, N-terminal domain MC28_C067 PF00555 delta endotoxin MC28_C067 PF03944 delta endotoxin MC28_C067 PF17997 Insecticidal delta-endotoxin CryIA(c) domain 5 MC28_C068 PF00388 Phosphatidylinositol-specific phospholipase C, X domain MC28_C073 PF01609 Transposase DDE domain MC28_C075 PF13610 DDE domain MC28_C076 PF00555 delta endotoxin MC28_C076 PF03944 delta endotoxin MC28_C076 PF03945 delta endotoxin, N-terminal domain MC28_C077 PF01238 Phosphomannose isomerase type I MC28_C080 PF00665 Integrase core domain MC28_C080 PF13276 HTH-like domain MC28_C080 PF13333 Integrase core domain MC28_C082 PF01609 Transposase DDE domain MC28_C083 PF01609 Transposase DDE domain MC28_C085 PF00664 ABC transporter transmembrane region MC28_C085 PF00005 ABC transporter MC28_C085 PF03412 Peptidase C39 family MC28_C089 PF00589 Phage integrase family MC28_C091 PF14040 Deoxyribonuclease NucA/NucB MC28_C100 PF13610 DDE domain MC28_C101 PF03944 delta endotoxin MC28_C101 PF00555 delta endotoxin MC28_C101 PF03945 delta endotoxin, N-terminal domain MC28_D009 PF00437 Type II/IV secretion system protein MC28_D015 PF04956 TrbC/VIRB2 family MC28_D017 PF12696 TraM recognition site of TraD and TraG MC28_D026 PF01348 Type II intron maturase MC28_D026 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) MC28_D027 PF00877 NlpC/P60 family MC28_D030 PF17632 Family of unknown function (DUF5513) MC28_D036 PF17633 Family of unknown function (DUF5514) MC28_D039 PF17633 Family of unknown function (DUF5514) MC28_D040 PF17630 Family of unknown function (DUF5511) MC28_D041 PF18840 Large polyvalent protein associated domain 25 MC28_D045 PF13154 Protein of unknown function (DUF3991) MC28_D046 PF13958 Toxin ToxN, type III toxin-antitoxin system MC28_D048 PF01751 Toprim domain MC28_D048 PF01131 DNA topoisomerase MC28_D059 PF02899 Phage integrase, N-terminal SAM-like domain MC28_D059 PF00589 Phage integrase family MC28_D061 PF00239 Resolvase, N terminal domain MC28_D061 PF02796 Helix-turn-helix domain of resolvase MC28_D062 PF02481 DNA recombination-mediator protein A MC28_D068 PF00817 impB/mucB/samB family MC28_D068 PF11798 IMS family HHH motif MC28_D068 PF11799 impB/mucB/samB family C-terminal domain MC28_D071 PF13411 MerR HTH family regulatory protein MC28_D071 PF13152 Protein of unknown function (DUF3967) MC28_D072 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MC28_D075 PF01022 Bacterial regulatory protein, arsR family MC28_D078 PF13614 AAA domain MC28_D079 PF08708 Primase C terminal 1 (PriCT-1) MC28_D083 PF17362 Family of unknown function MC28_D110 PF00437 Type II/IV secretion system protein MC28_D116 PF04956 TrbC/VIRB2 family MC28_D118 PF12696 TraM recognition site of TraD and TraG MC28_D126 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) MC28_D126 PF01348 Type II intron maturase MC28_D127 PF00877 NlpC/P60 family MC28_D129 PF17632 Family of unknown function (DUF5513) MC28_D136 PF17633 Family of unknown function (DUF5514) MC28_D138 PF18840 Large polyvalent protein associated domain 25 MC28_D142 PF13154 Protein of unknown function (DUF3991) MC28_D148 PF01751 Toprim domain MC28_D148 PF01131 DNA topoisomerase MC28_D153 PF00239 Resolvase, N terminal domain MC28_D153 PF02796 Helix-turn-helix domain of resolvase MC28_D158 PF18801 response regulator aspartate phosphatase H, N terminal MC28_D159 PF17443 Uncharacterized protein pXO2-72 MC28_D163 PF13411 MerR HTH family regulatory protein MC28_D163 PF13152 Protein of unknown function (DUF3967) MC28_D164 PF13610 DDE domain MC28_D165 PF03944 delta endotoxin MC28_D165 PF00555 delta endotoxin MC28_D165 PF03945 delta endotoxin, N-terminal domain MC28_D165 PF17997 Insecticidal delta-endotoxin CryIA(c) domain 5 MC28_D167 PF13610 DDE domain MC28_D169 PF02796 Helix-turn-helix domain of resolvase MC28_D169 PF00239 Resolvase, N terminal domain MC28_D174 PF01609 Transposase DDE domain MC28_D176 PF01609 Transposase DDE domain MC28_D179 PF13411 MerR HTH family regulatory protein MC28_D179 PF13152 Protein of unknown function (DUF3967) MC28_D180 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle MC28_D185 PF01609 Transposase DDE domain MC28_D190 PF08708 Primase C terminal 1 (PriCT-1) MC28_D194 PF17362 Family of unknown function MC28_D196 PF17631 Family of unknown function (DUF5512) MC28_E020 PF01381 Helix-turn-helix MC28_E029 PF01051 Initiator Replication protein MC28_E038 PF03945 delta endotoxin, N-terminal domain MC28_E038 PF00555 delta endotoxin MC28_E038 PF03944 delta endotoxin MC28_E042 PF13610 DDE domain MC28_E051 PF01338 Bacillus thuringiensis toxin MC28_E053 PF01338 Bacillus thuringiensis toxin MC28_E055 PF00534 Glycosyl transferases group 1 MC28_E055 PF13439 Glycosyltransferase Family 4 MC28_E057 PF01370 NAD dependent epimerase/dehydratase family MC28_E061 PF07029 CryBP1 protein MC28_E064 PF03945 delta endotoxin, N-terminal domain MC28_E064 PF00555 delta endotoxin MC28_E064 PF03944 delta endotoxin MC28_E064 PF17997 Insecticidal delta-endotoxin CryIA(c) domain 5 MC28_E065 PF00388 Phosphatidylinositol-specific phospholipase C, X domain MC28_E068 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain MC28_E068 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain MC28_E068 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain MC28_E069 PF00483 Nucleotidyl transferase MC28_E071 PF00388 Phosphatidylinositol-specific phospholipase C, X domain MC28_E072 PF00239 Resolvase, N terminal domain MC28_E072 PF02796 Helix-turn-helix domain of resolvase MC28_E073 PF03944 delta endotoxin MC28_E073 PF03945 delta endotoxin, N-terminal domain MC28_E073 PF17997 Insecticidal delta-endotoxin CryIA(c) domain 5 MC28_E073 PF00555 delta endotoxin MC28_E074 PF03945 delta endotoxin, N-terminal domain MC28_E074 PF00555 delta endotoxin MC28_E074 PF03944 delta endotoxin MC28_E074 PF17997 Insecticidal delta-endotoxin CryIA(c) domain 5 MC28_E079 PF00388 Phosphatidylinositol-specific phospholipase C, X domain MC28_E084 PF03944 delta endotoxin MC28_E084 PF03945 delta endotoxin, N-terminal domain MC28_E084 PF17997 Insecticidal delta-endotoxin CryIA(c) domain 5 MC28_E084 PF00555 delta endotoxin MC28_E085 PF03945 delta endotoxin, N-terminal domain MC28_E085 PF03944 delta endotoxin MC28_E085 PF00555 delta endotoxin MC28_E088 PF01609 Transposase DDE domain MC28_E089 PF01609 Transposase DDE domain MC28_E091 PF03323 Bacillus/Clostridium GerA spore germination protein MC28_E094 PF17997 Insecticidal delta-endotoxin CryIA(c) domain 5 MC28_E094 PF00555 delta endotoxin MC28_E094 PF03945 delta endotoxin, N-terminal domain MC28_E094 PF03944 delta endotoxin MC28_E095 PF03945 delta endotoxin, N-terminal domain MC28_E095 PF03944 delta endotoxin MC28_E095 PF17997 Insecticidal delta-endotoxin CryIA(c) domain 5 MC28_E095 PF00555 delta endotoxin MC28_E097 PF02796 Helix-turn-helix domain of resolvase MC28_E097 PF00239 Resolvase, N terminal domain MC28_E098 PF13700 Domain of unknown function (DUF4158) MC28_E098 PF01526 Tn3 transposase DDE domain MC28_E103 PF13614 AAA domain MC28_E108 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) MC28_E113 PF17997 Insecticidal delta-endotoxin CryIA(c) domain 5 MC28_E113 PF00555 delta endotoxin MC28_E113 PF03945 delta endotoxin, N-terminal domain MC28_E113 PF03944 delta endotoxin MC28_E115 PF01609 Transposase DDE domain MC28_E116 PF01609 Transposase DDE domain MC28_E117 PF17209 Hfq protein MC28_E118 PF18277 AbrB C-terminal domain MC28_E118 PF04014 Antidote-toxin recognition MazE, bacterial antitoxin MC28_E119 PF00892 EamA-like transporter family MC28_E120 PF00155 Aminotransferase class I and II MC28_E121 PF00291 Pyridoxal-phosphate dependent enzyme MC28_E123 PF00155 Aminotransferase class I and II MC28_E123 PF00392 Bacterial regulatory proteins, gntR family MC28_E137 PF01609 Transposase DDE domain MC28_E138 PF00388 Phosphatidylinositol-specific phospholipase C, X domain MC28_E141 PF01609 Transposase DDE domain MC28_E146 PF01022 Bacterial regulatory protein, arsR family MC28_E155 PF02796 Helix-turn-helix domain of resolvase MC28_E155 PF00239 Resolvase, N terminal domain MC28_E156 PF03372 Endonuclease/Exonuclease/phosphatase family MC28_E158 PF00388 Phosphatidylinositol-specific phospholipase C, X domain MC28_E160 PF13610 DDE domain MC28_E161 PF00589 Phage integrase family MC28_E169 PF01348 Type II intron maturase MC28_E169 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) MC28_E170 PF13154 Protein of unknown function (DUF3991) MC28_E171 PF13342 C-terminal repeat of topoisomerase MC28_E171 PF01751 Toprim domain MC28_E171 PF01131 DNA topoisomerase MC28_E173 PF18840 Large polyvalent protein associated domain 25 MC28_E180 PF00877 NlpC/P60 family MC28_E182 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) MC28_F003 PF18840 Large polyvalent protein associated domain 25 MC28_F010 PF00877 NlpC/P60 family MC28_F012 PF00078 Reverse transcriptase (RNA-dependent DNA polymerase) MC28_F046 PF00465 Iron-containing alcohol dehydrogenase MC28_F046 PF00171 Aldehyde dehydrogenase family MC28_F050 PF13597 Anaerobic ribonucleoside-triphosphate reductase MC28_F050 PF03477 ATP cone domain MC28_F051 PF14256 YwiC-like protein MC28_F053 PF00258 Flavodoxin MC28_F053 PF00753 Metallo-beta-lactamase superfamily MC28_F054 PF01077 Nitrite and sulphite reductase 4Fe-4S domain MC28_F054 PF07992 Pyridine nucleotide-disulphide oxidoreductase MC28_F054 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain MC28_F054 PF18267 Rubredoxin NAD+ reductase C-terminal domain MC28_F054 PF04324 BFD-like [2Fe-2S] binding domain MC28_F055 PF00301 Rubredoxin MC28_F056 PF00325 Bacterial regulatory proteins, crp family MC28_F056 PF00027 Cyclic nucleotide-binding domain MC28_F057 PF13529 Peptidase_C39 like family MC28_F058 PF01226 Formate/nitrite transporter MC28_F059 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain MC28_F059 PF00056 lactate/malate dehydrogenase, NAD binding domain MC28_F061 PF13520 Amino acid permease MC28_F062 PF01262 Alanine dehydrogenase/PNT, C-terminal domain MC28_F062 PF05222 Alanine dehydrogenase/PNT, N-terminal domain MC28_F063 PF13520 Amino acid permease MC28_F065 PF00271 Helicase conserved C-terminal domain MC28_F075 PF02463 RecF/RecN/SMC N terminal domain MC28_F084 PF00704 Glycosyl hydrolases family 18 MC28_F084 PF00553 Cellulose binding domain MC28_F084 PF00041 Fibronectin type III domain MC28_F086 PF00082 Subtilase family MC28_F088 PF01609 Transposase DDE domain MC28_F089 PF00583 Acetyltransferase (GNAT) family MC28_F089 PF01047 MarR family MC28_F090 PF00583 Acetyltransferase (GNAT) family MC28_F093 PF03060 Nitronate monooxygenase MC28_F096 PF00005 ABC transporter MC28_F097 PF00216 Bacterial DNA-binding protein MC28_F098 PF03965 Penicillinase repressor MC28_F101 PF00388 Phosphatidylinositol-specific phospholipase C, X domain MC28_F106 PF02839 Carbohydrate binding domain MC28_F107 PF00465 Iron-containing alcohol dehydrogenase MC28_F111 PF02733 Dak1 domain MC28_F112 PF02734 DAK2 domain MC28_F113 PF03610 PTS system fructose IIA component MC28_F113 PF05524 PEP-utilising enzyme, N-terminal MC28_F113 PF00391 PEP-utilising enzyme, mobile domain MC28_F113 PF00381 PTS HPr component phosphorylation site MC28_F114 PF00381 PTS HPr component phosphorylation site MC28_F115 PF00230 Major intrinsic protein MC28_F118 PF01380 SIS domain MC28_F118 PF00571 CBS domain MC28_F119 PF11975 Family 4 glycosyl hydrolase C-terminal domain MC28_F119 PF02056 Family 4 glycosyl hydrolase MC28_F120 PF03830 PTS system sorbose subfamily IIB component MC28_F120 PF03610 PTS system fructose IIA component MC28_F121 PF03609 PTS system sorbose-specific iic component MC28_F122 PF03613 PTS system mannose/fructose/sorbose family IID component MC28_F124 PF00395 S-layer homology domain MC28_F124 PF02903 Alpha amylase, N-terminal ig-like domain MC28_F124 PF00128 Alpha amylase, catalytic domain MC28_F125 PF00553 Cellulose binding domain MC28_F125 PF00704 Glycosyl hydrolases family 18 MC28_F125 PF00041 Fibronectin type III domain MC28_F127 PF04542 Sigma-70 region 2 MC28_F127 PF08281 Sigma-70, region 4 MC28_F130 PF13610 DDE domain MC28_F132 PF00005 ABC transporter MC28_F133 PF02687 FtsX-like permease family MC28_F137 PF01098 Cell cycle protein MC28_F138 PF07282 Putative transposase DNA-binding domain MC28_F138 PF01385 Probable transposase MC28_F138 PF12323 Helix-turn-helix domain MC28_F139 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_F139 PF00672 HAMP domain MC28_F139 PF00512 His Kinase A (phospho-acceptor) domain MC28_F140 PF00486 Transcriptional regulatory protein, C terminal MC28_F140 PF00072 Response regulator receiver domain MC28_F143 PF12704 MacB-like periplasmic core domain MC28_F143 PF02687 FtsX-like permease family MC28_F143 PF00005 ABC transporter MC28_F147 PF17443 Uncharacterized protein pXO2-72 MC28_F151 PF08220 DeoR-like helix-turn-helix domain MC28_F151 PF00455 DeoR C terminal sensor domain MC28_F152 PF02687 FtsX-like permease family MC28_F152 PF12704 MacB-like periplasmic core domain MC28_F154 PF01609 Transposase DDE domain MC28_F169 PF03323 Bacillus/Clostridium GerA spore germination protein MC28_F171 PF05525 Branched-chain amino acid transport protein MC28_F172 PF01235 Sodium:alanine symporter family MC28_F173 PF04960 Glutaminase MC28_F179 PF14307 Glycosyltransferase WbsX MC28_F179 PF05045 Rhamnan synthesis protein F MC28_F180 PF00005 ABC transporter MC28_F183 PF00698 Acyl transferase domain MC28_F185 PF00550 Phosphopantetheine attachment site MC28_F186 PF07977 FabA-like domain MC28_F189 PF08669 Glycine cleavage T-protein C-terminal barrel domain MC28_F189 PF01571 Aminomethyltransferase folate-binding domain MC28_F190 PF00109 Beta-ketoacyl synthase, N-terminal domain MC28_F190 PF02801 Beta-ketoacyl synthase, C-terminal domain MC28_F191 PF00483 Nucleotidyl transferase MC28_F192 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase MC28_F193 PF16363 GDP-mannose 4,6 dehydratase MC28_F194 PF04321 RmlD substrate binding domain MC28_F195 PF01609 Transposase DDE domain MC28_F199 PF08808 RES domain MC28_F205 PF00589 Phage integrase family MC28_F205 PF13495 Phage integrase, N-terminal SAM-like domain MC28_F212 PF00005 ABC transporter MC28_F217 PF07883 Cupin domain MC28_F218 PF12833 Helix-turn-helix domain MC28_F218 PF01497 Periplasmic binding protein MC28_F221 PF01022 Bacterial regulatory protein, arsR family MC28_F223 PF00005 ABC transporter MC28_F225 PF00512 His Kinase A (phospho-acceptor) domain MC28_F225 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_F225 PF13426 PAS domain MC28_F225 PF00672 HAMP domain MC28_F226 PF02687 FtsX-like permease family MC28_F228 PF02687 FtsX-like permease family MC28_F229 PF00005 ABC transporter MC28_F233 PF01238 Phosphomannose isomerase type I MC28_F234 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 MC28_F234 PF02378 Phosphotransferase system, EIIC MC28_F234 PF02302 PTS system, Lactose/Cellobiose specific IIB subunit MC28_F235 PF08279 HTH domain MC28_F235 PF05043 Mga helix-turn-helix domain MC28_F235 PF00874 PRD domain MC28_F235 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 MC28_F236 PF01316 Arginine repressor, DNA binding domain MC28_F236 PF02863 Arginine repressor, C-terminal domain MC28_F240 PF00877 NlpC/P60 family MC28_F241 PF00291 Pyridoxal-phosphate dependent enzyme MC28_F242 PF01262 Alanine dehydrogenase/PNT, C-terminal domain MC28_F242 PF05222 Alanine dehydrogenase/PNT, N-terminal domain MC28_F244 PF09397 Ftsk gamma domain MC28_F244 PF17854 FtsK alpha domain MC28_F244 PF01580 FtsK/SpoIIIE family MC28_F249 PF00704 Glycosyl hydrolases family 18 MC28_F249 PF00041 Fibronectin type III domain MC28_F249 PF00553 Cellulose binding domain MC28_F250 PF00797 N-acetyltransferase MC28_F252 PF01022 Bacterial regulatory protein, arsR family MC28_F254 PF00916 Sulfate permease family MC28_F254 PF01740 STAS domain MC28_F256 PF00550 Phosphopantetheine attachment site MC28_F257 PF03831 PhnA domain MC28_F257 PF08274 PhnA Zinc-Ribbon MC28_F258 PF07690 Major Facilitator Superfamily MC28_F259 PF03473 MOSC domain MC28_F259 PF03475 3-alpha domain MC28_F260 PF00392 Bacterial regulatory proteins, gntR family MC28_F260 PF07729 FCD domain MC28_F262 PF01381 Helix-turn-helix MC28_F267 PF09704 CRISPR-associated protein (Cas_Cas5) MC28_F274 PF01337 Barstar (barnase inhibitor) MC28_F275 PF00545 ribonuclease MC28_F276 PF00589 Phage integrase family MC28_F278 PF01609 Transposase DDE domain MC28_F279 PF01609 Transposase DDE domain MC28_F285 PF01494 FAD binding domain MC28_F288 PF13154 Protein of unknown function (DUF3991) MC28_F289 PF13342 C-terminal repeat of topoisomerase MC28_F289 PF01131 DNA topoisomerase MC28_F289 PF01751 Toprim domain MC28_G003 PF12102 Domain of unknown function (DUF3578) MC28_G003 PF07728 AAA domain (dynein-related subfamily) MC28_G003 PF07728 AAA domain (dynein-related subfamily) MC28_G003 PF12102 Domain of unknown function (DUF3578) MC28_G005 PF04002 RadC-like JAB domain MC28_G006 PF00356 Bacterial regulatory proteins, lacI family MC28_G007 PF07690 Major Facilitator Superfamily MC28_G008 PF01408 Oxidoreductase family, NAD-binding Rossmann fold MC28_G008 PF02894 Oxidoreductase family, C-terminal alpha/beta domain MC28_G009 PF00294 pfkB family carbohydrate kinase MC28_G010 PF00171 Aldehyde dehydrogenase family MC28_G011 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain MC28_G011 PF00205 Thiamine pyrophosphate enzyme, central domain MC28_G011 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain MC28_G012 PF01261 Xylose isomerase-like TIM barrel MC28_G013 PF01116 Fructose-bisphosphate aldolase class-II MC28_G014 PF04962 KduI/IolB family MC28_G016 PF01098 Cell cycle protein MC28_G018 PF18801 response regulator aspartate phosphatase H, N terminal MC28_G023 PF12389 Camelysin metallo-endopeptidase MC28_G025 PF00854 POT family MC28_G032 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MC28_G032 PF00672 HAMP domain MC28_G032 PF02743 Cache domain MC28_G034 PF18801 response regulator aspartate phosphatase H, N terminal MC28_G035 PF00535 Glycosyl transferase family 2 MC28_G036 PF00535 Glycosyl transferase family 2 MC28_G037 PF04464 CDP-Glycerol:Poly(glycerophosphate) glycerophosphotransferase MC28_G038 PF16363 GDP-mannose 4,6 dehydratase MC28_G039 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family MC28_G040 PF02348 Cytidylyltransferase MC28_G043 PF08666 SAF domain MC28_G043 PF03102 NeuB family MC28_G048 PF12996 DUF based on E. rectale Gene description (DUF3880) MC28_G052 PF07992 Pyridine nucleotide-disulphide oxidoreductase MC28_G053 PF01206 Sulfurtransferase TusA MC28_G053 PF00581 Rhodanese-like domain MC28_G057 PF00128 Alpha amylase, catalytic domain MC28_G057 PF00686 Starch binding domain MC28_G057 PF01833 IPT/TIG domain MC28_G061 PF00501 AMP-binding enzyme MC28_G061 PF13193 AMP-binding enzyme C-terminal domain MC28_G062 PF01609 Transposase DDE domain MC28_G063 PF00324 Amino acid permease MC28_G064 PF02574 Homocysteine S-methyltransferase MC28_G065 PF07282 Putative transposase DNA-binding domain MC28_G065 PF01385 Probable transposase MC28_G065 PF12323 Helix-turn-helix domain MC28_G066 PF07681 DoxX MC28_G068 PF13529 Peptidase_C39 like family MC28_G069 PF00486 Transcriptional regulatory protein, C terminal MC28_G069 PF00072 Response regulator receiver domain MC28_G070 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_G070 PF13426 PAS domain MC28_G070 PF00672 HAMP domain MC28_G070 PF00512 His Kinase A (phospho-acceptor) domain MC28_G073 PF01047 MarR family MC28_G075 PF05368 NmrA-like family MC28_G077 PF00589 Phage integrase family MC28_G077 PF13495 Phage integrase, N-terminal SAM-like domain MC28_G078 PF03315 Serine dehydratase beta chain MC28_G078 PF01842 ACT domain MC28_G079 PF00155 Aminotransferase class I and II MC28_G082 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MC28_G082 PF03466 LysR substrate binding domain MC28_G083 PF07690 Major Facilitator Superfamily MC28_G085 PF00144 Beta-lactamase MC28_G085 PF11954 Domain of unknown function (DUF3471) MC28_G089 PF00005 ABC transporter MC28_G090 PF01494 FAD binding domain MC28_G097 PF02275 Linear amide C-N hydrolases, choloylglycine hydrolase family MC28_G100 PF01381 Helix-turn-helix MC28_G102 PF14411 A nuclease of the HNH/ENDO VII superfamily with conserved LHH MC28_G102 PF04740 LXG domain of WXG superfamily MC28_G107 PF01337 Barstar (barnase inhibitor) MC28_G108 PF00196 Bacterial regulatory proteins, luxR family MC28_G108 PF00072 Response regulator receiver domain MC28_G111 PF00144 Beta-lactamase MC28_G113 PF00144 Beta-lactamase MC28_G117 PF08241 Methyltransferase domain MC28_G118 PF02661 Fic/DOC family MC28_G129 PF00269 Small, acid-soluble spore proteins, alpha/beta type MC28_G130 PF07282 Putative transposase DNA-binding domain MC28_G130 PF01385 Probable transposase MC28_G130 PF12323 Helix-turn-helix domain MC28_G135 PF02687 FtsX-like permease family MC28_G136 PF00005 ABC transporter MC28_G137 PF00512 His Kinase A (phospho-acceptor) domain MC28_G137 PF13426 PAS domain MC28_G137 PF00672 HAMP domain MC28_G137 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_G139 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_G139 PF00512 His Kinase A (phospho-acceptor) domain MC28_G140 PF00486 Transcriptional regulatory protein, C terminal MC28_G140 PF00072 Response regulator receiver domain MC28_G142 PF00905 Penicillin binding protein transpeptidase domain MC28_G142 PF00912 Transglycosylase MC28_G144 PF02687 FtsX-like permease family MC28_G145 PF00005 ABC transporter MC28_G146 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_G147 PF00486 Transcriptional regulatory protein, C terminal MC28_G147 PF00072 Response regulator receiver domain MC28_G148 PF01925 Sulfite exporter TauE/SafE MC28_G149 PF01978 Sugar-specific transcriptional regulator TrmB MC28_G149 PF11495 Archaeal transcriptional regulator TrmB MC28_G150 PF01381 Helix-turn-helix MC28_G154 PF00216 Bacterial DNA-binding protein MC28_G157 PF03062 MBOAT, membrane-bound O-acyltransferase family MC28_G160 PF01522 Polysaccharide deacetylase MC28_G161 PF00672 HAMP domain MC28_G161 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_G161 PF00512 His Kinase A (phospho-acceptor) domain MC28_G161 PF13426 PAS domain MC28_G162 PF00486 Transcriptional regulatory protein, C terminal MC28_G162 PF00072 Response regulator receiver domain MC28_G163 PF13411 MerR HTH family regulatory protein MC28_G164 PF02687 FtsX-like permease family MC28_G165 PF00005 ABC transporter MC28_G166 PF00486 Transcriptional regulatory protein, C terminal MC28_G166 PF00072 Response regulator receiver domain MC28_G167 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_G168 PF01609 Transposase DDE domain MC28_G169 PF01609 Transposase DDE domain MC28_G171 PF12146 Serine aminopeptidase, S33 MC28_G171 PF13026 Protein of unknown function (DUF3887) MC28_G175 PF00144 Beta-lactamase MC28_G176 PF00144 Beta-lactamase MC28_G177 PF03466 LysR substrate binding domain MC28_G177 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family MC28_G178 PF00892 EamA-like transporter family MC28_G182 PF03009 Glycerophosphoryl diester phosphodiesterase family MC28_G187 PF07282 Putative transposase DNA-binding domain MC28_G187 PF01385 Probable transposase MC28_G187 PF12323 Helix-turn-helix domain MC28_G190 PF00583 Acetyltransferase (GNAT) family MC28_G191 PF13458 Periplasmic binding protein MC28_G192 PF08264 Anticodon-binding domain of tRNA MC28_G192 PF09334 tRNA synthetases class I (M) MC28_G193 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) MC28_G194 PF00491 Arginase family MC28_G195 PF01820 D-ala D-ala ligase N-terminus MC28_G195 PF07478 D-ala D-ala ligase C-terminus MC28_G196 PF07883 Cupin domain MC28_G197 PF02630 SCO1/SenC MC28_G198 PF17440 Thiol-activated cytolysin beta sandwich domain MC28_G198 PF01289 Thiol-activated cytolysin MC28_G223 PF03838 Recombination protein U MC28_G238 PF03979 Sigma-70 factor, region 1.1 MC28_G238 PF00140 Sigma-70 factor, region 1.2 MC28_G238 PF04539 Sigma-70 region 3 MC28_G238 PF04542 Sigma-70 region 2 MC28_G238 PF04545 Sigma-70, region 4 MC28_G251 PF00392 Bacterial regulatory proteins, gntR family MC28_G251 PF07729 FCD domain MC28_G252 PF02782 FGGY family of carbohydrate kinases, C-terminal domain MC28_G252 PF00370 FGGY family of carbohydrate kinases, N-terminal domain MC28_G253 PF02447 GntP family permease MC28_G254 PF00393 6-phosphogluconate dehydrogenase, C-terminal domain MC28_G254 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase MC28_G266 PF00877 NlpC/P60 family MC28_G287 PF01580 FtsK/SpoIIIE family MC28_G287 PF17854 FtsK alpha domain MC28_G287 PF09397 Ftsk gamma domain MC28_G290 PF16736 Single Cache-like MC28_G290 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase MC28_G290 PF00512 His Kinase A (phospho-acceptor) domain MC28_G290 PF00989 PAS fold MC28_G291 PF00072 Response regulator receiver domain MC28_G291 PF00486 Transcriptional regulatory protein, C terminal MC28_G293 PF13180 PDZ domain MC28_G294 PF12704 MacB-like periplasmic core domain MC28_G294 PF02687 FtsX-like permease family MC28_G295 PF00005 ABC transporter MC28_G297 PF00082 Subtilase family MC28_G301 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain MC28_G301 PF00672 HAMP domain MC28_G305 PF00440 Bacterial regulatory proteins, tetR family MC28_G306 PF07690 Major Facilitator Superfamily MC28_G308 PF07859 alpha/beta hydrolase fold MC28_G310 PF00704 Glycosyl hydrolases family 18 MC28_G310 PF00041 Fibronectin type III domain MC28_G310 PF00553 Cellulose binding domain MC28_G313 PF18801 response regulator aspartate phosphatase H, N terminal MC28_G314 PF01022 Bacterial regulatory protein, arsR family MC28_G325 PF07282 Putative transposase DNA-binding domain MC28_G325 PF01385 Probable transposase MC28_G325 PF12323 Helix-turn-helix domain MC28_G327 PF16123 Hydroxyacylglutathione hydrolase C-terminus MC28_G327 PF00753 Metallo-beta-lactamase superfamily MC28_G330 PF00717 Peptidase S24-like MC28_G330 PF01726 LexA DNA binding domain MC28_G343 PF14550 Putative phage serine protease XkdF MC28_G367 PF01510 N-acetylmuramoyl-L-alanine amidase MC28_G381 PF00293 NUDIX domain MC28_G388 PF00293 NUDIX domain MC28_G411 PF14659 Phage integrase, N-terminal SAM-like domain MC28_G411 PF00589 Phage integrase family