MC28_0001 SM00116 Domain in cystathionine beta-synthase and other proteins. MC28_0004 SM00287 Bacterial SH3 domain homologues MC28_0023 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_0028 SM00382 ATPases associated with a variety of cellular activities MC28_0045 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_0048 SM00450 Rhodanese Homology Domain MC28_0050 SM00450 Rhodanese Homology Domain MC28_0051 SM00450 Rhodanese Homology Domain MC28_0051 SM00849 Metallo-beta-lactamase superfamily MC28_0053 SM00450 Rhodanese Homology Domain MC28_0054 SM00450 Rhodanese Homology Domain MC28_0059 SM00829 Enoylreductase MC28_0063 SM00829 Enoylreductase MC28_0072 SM00287 Bacterial SH3 domain homologues MC28_0074 SM00382 ATPases associated with a variety of cellular activities MC28_0106 SM00344 helix_turn_helix ASNC type MC28_0109 SM00422 helix_turn_helix, mercury resistance MC28_0129 SM00382 ATPases associated with a variety of cellular activities MC28_0130 SM00382 ATPases associated with a variety of cellular activities MC28_0131 SM00062 Bacterial periplasmic substrate-binding proteins MC28_0131 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. MC28_0133 SM00382 ATPases associated with a variety of cellular activities MC28_0145 SM00729 Elongator protein 3, MiaB family, Radical SAM MC28_0166 SM00382 ATPases associated with a variety of cellular activities MC28_0167 SM00382 ATPases associated with a variety of cellular activities MC28_0178 SM00091 PAS domain MC28_0178 SM00387 Histidine kinase-like ATPases MC28_0179 SM00448 cheY-homologous receiver domain MC28_0182 SM00487 DEAD-like helicases superfamily MC28_0182 SM00490 helicase superfamily c-terminal domain MC28_0199 SM00287 Bacterial SH3 domain homologues MC28_0199 SM00644 MC28_0199 MC28_0201 SM01061 CAT RNA binding domain MC28_0204 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_0208 SM00530 Helix-turn-helix XRE-family like proteins MC28_0219 SM01120 MC28_0219 MC28_0224 SM00448 cheY-homologous receiver domain MC28_0224 SM00862 Transcriptional regulatory protein, C terminal MC28_0225 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_0225 SM00387 Histidine kinase-like ATPases MC28_0225 SM00388 His Kinase A (phosphoacceptor) domain MC28_0227 SM00028 Tetratricopeptide repeats MC28_0239 SM00331 Sigma factor PP2C-like phosphatases MC28_0239 SM00448 cheY-homologous receiver domain MC28_0240 SM00138 Methyltransferase, chemotaxis proteins MC28_0241 SM00387 Histidine kinase-like ATPases MC28_0241 SM00388 His Kinase A (phosphoacceptor) domain MC28_0241 SM00448 cheY-homologous receiver domain MC28_0248 SM00829 Enoylreductase MC28_0256 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MC28_0265 SM00530 Helix-turn-helix XRE-family like proteins MC28_0278 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_0281 SM00382 ATPases associated with a variety of cellular activities MC28_0296 SM00422 helix_turn_helix, mercury resistance MC28_0321 SM00354 helix_turn _helix lactose operon repressor MC28_0323 SM00849 Metallo-beta-lactamase superfamily MC28_0332 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MC28_0335 SM00342 helix_turn_helix, arabinose operon control protein MC28_0335 SM00871 Bacterial transcription activator, effector binding domain MC28_0337 SM00387 Histidine kinase-like ATPases MC28_0337 SM00388 His Kinase A (phosphoacceptor) domain MC28_0338 SM00448 cheY-homologous receiver domain MC28_0338 SM00862 Transcriptional regulatory protein, C terminal MC28_0345 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MC28_0345 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_0352 SM00357 Cold shock protein domain MC28_0374 SM01060 MC28_0374 MC28_0376 SM00642 Alpha-amylase domain MC28_0378 SM00316 Ribosomal protein S1-like RNA-binding domain MC28_0390 SM00382 ATPases associated with a variety of cellular activities MC28_0390 SM01086 C-terminal, D2-small domain, of ClpB protein MC28_0396 SM00825 Beta-ketoacyl synthase MC28_0405 SM00382 ATPases associated with a variety of cellular activities MC28_0415 SM00155 Phospholipase D. Active site motifs. MC28_0421 SM01118 MC28_0421 MC28_0423 SM00954 Region found in RelA / SpoT proteins MC28_0455 SM00635 Bacterial Ig-like domain 2 MC28_0470 SM00047 Lysozyme subfamily 2 MC28_0474 SM01324 MC28_0474 MC28_0484 SM00861 Transketolase, pyrimidine binding domain MC28_0485 SM00530 Helix-turn-helix XRE-family like proteins MC28_0492 SM00382 ATPases associated with a variety of cellular activities MC28_0496 SM00530 Helix-turn-helix XRE-family like proteins MC28_0510 SM00530 Helix-turn-helix XRE-family like proteins MC28_0515 SM00382 ATPases associated with a variety of cellular activities MC28_0519 SM00014 Acid phosphatase homologues MC28_0529 SM00448 cheY-homologous receiver domain MC28_0529 SM00862 Transcriptional regulatory protein, C terminal MC28_0530 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_0530 SM00387 Histidine kinase-like ATPases MC28_0530 SM00388 His Kinase A (phosphoacceptor) domain MC28_0531 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_0531 SM00895 MC28_0531 MC28_0545 SM00822 MC28_0545 MC28_0552 SM00382 ATPases associated with a variety of cellular activities MC28_0557 SM00420 helix_turn_helix, Deoxyribose operon repressor MC28_0557 SM01134 MC28_0557 MC28_0561 SM01007 Class II Aldolase and Adducin N-terminal domain MC28_0565 SM00387 Histidine kinase-like ATPases MC28_0565 SM00388 His Kinase A (phosphoacceptor) domain MC28_0566 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_0570 SM00387 Histidine kinase-like ATPases MC28_0570 SM00388 His Kinase A (phosphoacceptor) domain MC28_0586 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MC28_0589 SM00091 PAS domain MC28_0589 SM00382 ATPases associated with a variety of cellular activities MC28_0592 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_0595 SM00382 ATPases associated with a variety of cellular activities MC28_0599 SM00344 helix_turn_helix ASNC type MC28_0624 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_0637 SM00917 LeuA allosteric (dimerisation) domain MC28_0638 SM01329 MC28_0638 MC28_0675 SM00387 Histidine kinase-like ATPases MC28_0676 SM00421 helix_turn_helix, Lux Regulon MC28_0676 SM00448 cheY-homologous receiver domain MC28_0693 SM00091 PAS domain MC28_0693 SM00387 Histidine kinase-like ATPases MC28_0693 SM00388 His Kinase A (phosphoacceptor) domain MC28_0697 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_0697 SM00387 Histidine kinase-like ATPases MC28_0697 SM00388 His Kinase A (phosphoacceptor) domain MC28_0707 SM00363 S4 RNA-binding domain MC28_0711 SM00448 cheY-homologous receiver domain MC28_0711 SM00862 Transcriptional regulatory protein, C terminal MC28_0712 SM00091 PAS domain MC28_0712 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_0712 SM00387 Histidine kinase-like ATPases MC28_0712 SM00388 His Kinase A (phosphoacceptor) domain MC28_0714 SM00257 Lysin motif MC28_0719 SM00487 DEAD-like helicases superfamily MC28_0719 SM00490 helicase superfamily c-terminal domain MC28_0721 SM00257 Lysin motif MC28_0723 SM00422 helix_turn_helix, mercury resistance MC28_0725 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MC28_0728 SM00644 MC28_0728 MC28_0730 SM00870 MC28_0730 MC28_0744 SM00411 bacterial (prokaryotic) histone like domain MC28_0749 SM00562 MC28_0749 MC28_0753 SM00028 Tetratricopeptide repeats MC28_0754 SM00914 MC28_0754 MC28_0763 SM00986 Uracil DNA glycosylase superfamily MC28_0763 SM00987 UreE urease accessory protein, C-terminal domain MC28_0767 SM00851 MGS-like domain MC28_0776 SM00479 MC28_0776 MC28_0776 SM00487 DEAD-like helicases superfamily MC28_0776 SM00491 MC28_0776 MC28_0781 SM00478 endonuclease III MC28_0783 SM00060 Fibronectin type 3 domain MC28_0794 SM00981 MC28_0794 MC28_0827 SM00450 Rhodanese Homology Domain MC28_0835 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs MC28_0835 SM00475 5'-3' exonuclease MC28_0848 SM00357 Cold shock protein domain MC28_0858 SM00422 helix_turn_helix, mercury resistance MC28_0858 SM00871 Bacterial transcription activator, effector binding domain MC28_0876 SM00073 Histidine Phosphotransfer domain MC28_0876 SM00260 Two component signalling adaptor domain MC28_0876 SM00387 Histidine kinase-like ATPases MC28_0876 SM01231 MC28_0876 MC28_0880 SM00138 Methyltransferase, chemotaxis proteins MC28_0895 SM00382 ATPases associated with a variety of cellular activities MC28_0902 SM00260 Two component signalling adaptor domain MC28_0902 SM00448 cheY-homologous receiver domain MC28_0916 SM00382 ATPases associated with a variety of cellular activities MC28_0916 SM00962 SRP54-type protein, GTPase domain MC28_0927 SM00028 Tetratricopeptide repeats MC28_0927 SM00530 Helix-turn-helix XRE-family like proteins MC28_0931 SM00382 ATPases associated with a variety of cellular activities MC28_0939 SM00835 Cupin MC28_0941 SM00855 Phosphoglycerate mutase family MC28_0945 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_0953 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_0953 SM00895 MC28_0953 MC28_0956 SM00833 Cobalamin synthesis protein cobW C-terminal domain MC28_0961 SM00422 helix_turn_helix, mercury resistance MC28_0975 SM00530 Helix-turn-helix XRE-family like proteins MC28_0982 SM00421 helix_turn_helix, Lux Regulon MC28_0982 SM00448 cheY-homologous receiver domain MC28_0984 SM00382 ATPases associated with a variety of cellular activities MC28_0987 SM00155 Phospholipase D. Active site motifs. MC28_0991 SM00919 Malic enzyme, NAD binding domain MC28_0991 SM01274 MC28_0991 MC28_0992 SM00387 Histidine kinase-like ATPases MC28_0993 SM00448 cheY-homologous receiver domain MC28_0994 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_0996 SM00487 DEAD-like helicases superfamily MC28_0996 SM00490 helicase superfamily c-terminal domain MC28_1000 SM00530 Helix-turn-helix XRE-family like proteins MC28_1037 SM00854 Bacterial capsule synthesis protein PGA_cap MC28_1049 SM00729 Elongator protein 3, MiaB family, Radical SAM MC28_1051 SM00448 cheY-homologous receiver domain MC28_1051 SM00862 Transcriptional regulatory protein, C terminal MC28_1055 SM00450 Rhodanese Homology Domain MC28_1065 SM01133 MC28_1065 MC28_1067 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain MC28_1077 SM01011 Aminopeptidase P, N-terminal domain MC28_1079 SM00287 Bacterial SH3 domain homologues MC28_1086 SM00460 Transglutaminase/protease-like homologues MC28_1092 SM00382 ATPases associated with a variety of cellular activities MC28_1094 SM00448 cheY-homologous receiver domain MC28_1094 SM00862 Transcriptional regulatory protein, C terminal MC28_1095 SM00387 Histidine kinase-like ATPases MC28_1098 SM00770 Zinc dependent phospholipase C (alpha toxin) MC28_1101 SM00116 Domain in cystathionine beta-synthase and other proteins. MC28_1101 SM00924 MgtE intracellular N domain MC28_1108 SM00421 helix_turn_helix, Lux Regulon MC28_1108 SM00448 cheY-homologous receiver domain MC28_1113 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain MC28_1113 SM00437 Bacterial DNA topoisomerase I DNA-binding domain MC28_1113 SM00493 MC28_1113 MC28_1135 SM00833 Cobalamin synthesis protein cobW C-terminal domain MC28_1137 SM00382 ATPases associated with a variety of cellular activities MC28_1145 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_1158 SM00287 Bacterial SH3 domain homologues MC28_1161 SM00448 cheY-homologous receiver domain MC28_1161 SM00862 Transcriptional regulatory protein, C terminal MC28_1162 SM00387 Histidine kinase-like ATPases MC28_1162 SM00388 His Kinase A (phosphoacceptor) domain MC28_1178 SM00448 cheY-homologous receiver domain MC28_1178 SM00862 Transcriptional regulatory protein, C terminal MC28_1179 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_1179 SM00387 Histidine kinase-like ATPases MC28_1179 SM00388 His Kinase A (phosphoacceptor) domain MC28_1193 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_1198 SM00460 Transglutaminase/protease-like homologues MC28_1220 SM00857 Resolvase, N terminal domain MC28_1223 SM00966 SpoVT / AbrB like domain MC28_1225 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_1231 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MC28_1231 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_1243 SM00833 Cobalamin synthesis protein cobW C-terminal domain MC28_1254 SM00855 Phosphoglycerate mutase family MC28_1264 SM00155 Phospholipase D. Active site motifs. MC28_1269 SM01091 Transporter associated domain MC28_1285 SM00244 prohibitin homologues MC28_1287 SM00855 Phosphoglycerate mutase family MC28_1289 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_1291 SM01005 Alanine racemase, C-terminal domain MC28_1296 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_1328 SM00829 Enoylreductase MC28_1333 SM00849 Metallo-beta-lactamase superfamily MC28_1336 SM00460 Transglutaminase/protease-like homologues MC28_1340 SM00926 Molybdopterin oxidoreductase Fe4S4 domain MC28_1344 SM00100 Cyclic nucleotide-monophosphate binding domain MC28_1344 SM00419 helix_turn_helix, cAMP Regulatory protein MC28_1345 SM00729 Elongator protein 3, MiaB family, Radical SAM MC28_1347 SM00852 Probable molybdopterin binding domain MC28_1374 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MC28_1375 SM00382 ATPases associated with a variety of cellular activities MC28_1381 SM00567 E-Z type HEAT repeats MC28_1381 SM00932 Scaffold protein Nfu/NifU N terminal MC28_1385 SM00836 DALR anticodon binding domain MC28_1385 SM01016 Arginyl tRNA synthetase N terminal dom MC28_1387 SM00028 Tetratricopeptide repeats MC28_1416 SM00563 Phosphate acyltransferases MC28_1428 SM00287 Bacterial SH3 domain homologues MC28_1428 SM00646 MC28_1428 MC28_1436 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. MC28_1436 SM00387 Histidine kinase-like ATPases MC28_1437 SM00421 helix_turn_helix, Lux Regulon MC28_1437 SM00448 cheY-homologous receiver domain MC28_1439 SM00829 Enoylreductase MC28_1451 SM00382 ATPases associated with a variety of cellular activities MC28_1459 SM01091 Transporter associated domain MC28_1462 SM00387 Histidine kinase-like ATPases MC28_1462 SM00388 His Kinase A (phosphoacceptor) domain MC28_1465 SM00882 Coenzyme A transferase MC28_1477 SM00219 Tyrosine kinase, catalytic domain MC28_1479 SM00014 Acid phosphatase homologues MC28_1492 SM00530 Helix-turn-helix XRE-family like proteins MC28_1511 SM00901 MC28_1511 MC28_1530 SM00644 MC28_1530 MC28_1537 SM00646 MC28_1537 MC28_1570 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_1578 SM00823 Phosphopantetheine attachment site MC28_1578 SM00824 Thioesterase MC28_1579 SM00923 MbtH-like protein MC28_1583 SM00411 bacterial (prokaryotic) histone like domain MC28_1590 SM00363 S4 RNA-binding domain MC28_1591 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain MC28_1592 SM00382 ATPases associated with a variety of cellular activities MC28_1600 SM00849 Metallo-beta-lactamase superfamily MC28_1605 SM00100 Cyclic nucleotide-monophosphate binding domain MC28_1607 SM00342 helix_turn_helix, arabinose operon control protein MC28_1616 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MC28_1616 SM00091 PAS domain MC28_1616 SM00387 Histidine kinase-like ATPases MC28_1616 SM00388 His Kinase A (phosphoacceptor) domain MC28_1618 SM00448 cheY-homologous receiver domain MC28_1618 SM00862 Transcriptional regulatory protein, C terminal MC28_1622 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_1624 SM00849 Metallo-beta-lactamase superfamily MC28_1628 SM01059 Chloramphenicol acetyltransferase MC28_1632 SM00530 Helix-turn-helix XRE-family like proteins MC28_1639 SM00357 Cold shock protein domain MC28_1644 SM00859 Semialdehyde dehydrogenase, NAD binding domain MC28_1653 SM00530 Helix-turn-helix XRE-family like proteins MC28_1659 SM00835 Cupin MC28_1672 SM01207 MC28_1672 MC28_1677 SM00849 Metallo-beta-lactamase superfamily MC28_1680 SM00487 DEAD-like helicases superfamily MC28_1680 SM00490 helicase superfamily c-terminal domain MC28_1685 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_1686 SM00855 Phosphoglycerate mutase family MC28_1696 SM00421 helix_turn_helix, Lux Regulon MC28_1697 SM00530 Helix-turn-helix XRE-family like proteins MC28_1698 SM00966 SpoVT / AbrB like domain MC28_1702 SM00936 Penicillin-binding protein 5, C-terminal domain MC28_1715 SM01276 MC28_1715 MC28_1720 SM00060 Fibronectin type 3 domain MC28_1721 SM00148 Phospholipase C, catalytic domain (part); domain X MC28_1725 SM00382 ATPases associated with a variety of cellular activities MC28_1751 SM00387 Histidine kinase-like ATPases MC28_1751 SM00388 His Kinase A (phosphoacceptor) domain MC28_1752 SM00448 cheY-homologous receiver domain MC28_1752 SM00862 Transcriptional regulatory protein, C terminal MC28_1760 SM00342 helix_turn_helix, arabinose operon control protein MC28_1767 SM00382 ATPases associated with a variety of cellular activities MC28_1771 SM00871 Bacterial transcription activator, effector binding domain MC28_1778 SM00342 helix_turn_helix, arabinose operon control protein MC28_1781 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_1793 SM00448 cheY-homologous receiver domain MC28_1793 SM00862 Transcriptional regulatory protein, C terminal MC28_1794 SM00387 Histidine kinase-like ATPases MC28_1799 SM00382 ATPases associated with a variety of cellular activities MC28_1801 SM00382 ATPases associated with a variety of cellular activities MC28_1807 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_1808 SM01209 MC28_1808 MC28_1838 SM00091 PAS domain MC28_1838 SM00387 Histidine kinase-like ATPases MC28_1838 SM00388 His Kinase A (phosphoacceptor) domain MC28_1844 SM00382 ATPases associated with a variety of cellular activities MC28_1847 SM00387 Histidine kinase-like ATPases MC28_1847 SM00388 His Kinase A (phosphoacceptor) domain MC28_1850 SM00829 Enoylreductase MC28_1851 SM00014 Acid phosphatase homologues MC28_1852 SM00740 MC28_1852 MC28_1859 SM00530 Helix-turn-helix XRE-family like proteins MC28_1863 SM00422 helix_turn_helix, mercury resistance MC28_1872 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_1884 SM00480 DNA polymerase III beta subunit MC28_1905 SM00465 GIY-YIG type nucleases (URI domain) MC28_1918 SM00448 cheY-homologous receiver domain MC28_1918 SM00862 Transcriptional regulatory protein, C terminal MC28_1919 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_1919 SM00387 Histidine kinase-like ATPases MC28_1919 SM00388 His Kinase A (phosphoacceptor) domain MC28_1924 SM00382 ATPases associated with a variety of cellular activities MC28_1929 SM00642 Alpha-amylase domain MC28_1936 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_1937 SM00829 Enoylreductase MC28_1956 SM00382 ATPases associated with a variety of cellular activities MC28_1960 SM00420 helix_turn_helix, Deoxyribose operon repressor MC28_1960 SM01134 MC28_1960 MC28_1966 SM00861 Transketolase, pyrimidine binding domain MC28_1976 SM00116 Domain in cystathionine beta-synthase and other proteins. MC28_1976 SM00382 ATPases associated with a variety of cellular activities MC28_1985 SM00060 Fibronectin type 3 domain MC28_2005 SM00341 Helicase and RNase D C-terminal MC28_2005 SM00487 DEAD-like helicases superfamily MC28_2005 SM00490 helicase superfamily c-terminal domain MC28_2005 SM00956 MC28_2005 MC28_2012 SM01131 MC28_2012 MC28_2016 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MC28_2021 SM01130 MC28_2021 MC28_2025 SM00091 PAS domain MC28_2025 SM00382 ATPases associated with a variety of cellular activities MC28_2039 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MC28_2048 SM00939 X-Pro dipeptidyl-peptidase C-terminal non-catalytic domain MC28_2049 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_2049 SM00387 Histidine kinase-like ATPases MC28_2049 SM00388 His Kinase A (phosphoacceptor) domain MC28_2050 SM00448 cheY-homologous receiver domain MC28_2050 SM00862 Transcriptional regulatory protein, C terminal MC28_2093 SM00382 ATPases associated with a variety of cellular activities MC28_2094 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_2106 SM00062 Bacterial periplasmic substrate-binding proteins MC28_2107 SM00382 ATPases associated with a variety of cellular activities MC28_2110 SM00028 Tetratricopeptide repeats MC28_2127 SM00849 Metallo-beta-lactamase superfamily MC28_2135 SM00382 ATPases associated with a variety of cellular activities MC28_2143 SM00830 Chorismate mutase type II MC28_2150 SM00860 SMI1 / KNR4 family MC28_2151 SM00287 Bacterial SH3 domain homologues MC28_2163 SM00382 ATPases associated with a variety of cellular activities MC28_2167 SM01133 MC28_2167 MC28_2174 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_2176 SM01217 MC28_2176 MC28_2177 SM00342 helix_turn_helix, arabinose operon control protein MC28_2180 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase MC28_2183 SM00346 helix_turn_helix isocitrate lyase regulation MC28_2189 SM00098 Alkaline phosphatase homologues MC28_2191 SM00530 Helix-turn-helix XRE-family like proteins MC28_2206 SM01060 MC28_2206 MC28_2225 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_2226 SM00889 Elongation factor G, domain IV MC28_2233 SM00342 helix_turn_helix, arabinose operon control protein MC28_2233 SM00871 Bacterial transcription activator, effector binding domain MC28_2238 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_2242 SM00387 Histidine kinase-like ATPases MC28_2242 SM00388 His Kinase A (phosphoacceptor) domain MC28_2243 SM00448 cheY-homologous receiver domain MC28_2243 SM00862 Transcriptional regulatory protein, C terminal MC28_2267 SM00797 Allophanate hydrolase subunit 2 MC28_2269 SM00346 helix_turn_helix isocitrate lyase regulation MC28_2274 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_2282 SM00342 helix_turn_helix, arabinose operon control protein MC28_2291 SM00365 Leucine-rich repeat, SDS22-like subfamily MC28_2291 SM00369 Leucine-rich repeats, typical (most populated) subfamily MC28_2291 SM00725 NEAr Transporter domain MC28_2327 SM00226 Low molecular weight phosphatase family MC28_2330 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_2337 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_2344 SM00344 helix_turn_helix ASNC type MC28_2351 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_2368 SM00849 Metallo-beta-lactamase superfamily MC28_2378 SM00382 ATPases associated with a variety of cellular activities MC28_2382 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_2382 SM00387 Histidine kinase-like ATPases MC28_2382 SM00388 His Kinase A (phosphoacceptor) domain MC28_2383 SM00448 cheY-homologous receiver domain MC28_2383 SM00862 Transcriptional regulatory protein, C terminal MC28_2406 SM00860 SMI1 / KNR4 family MC28_2413 SM00854 Bacterial capsule synthesis protein PGA_cap MC28_2421 SM00422 helix_turn_helix, mercury resistance MC28_2426 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_2434 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_2434 SM00387 Histidine kinase-like ATPases MC28_2434 SM00388 His Kinase A (phosphoacceptor) domain MC28_2435 SM00448 cheY-homologous receiver domain MC28_2435 SM00862 Transcriptional regulatory protein, C terminal MC28_2447 SM00382 ATPases associated with a variety of cellular activities MC28_2473 SM00530 Helix-turn-helix XRE-family like proteins MC28_2485 SM01266 MC28_2485 MC28_2495 SM00028 Tetratricopeptide repeats MC28_2499 SM01091 Transporter associated domain MC28_2500 SM00422 helix_turn_helix, mercury resistance MC28_2513 SM01350 MC28_2513 MC28_2514 SM00861 Transketolase, pyrimidine binding domain MC28_2517 SM00829 Enoylreductase MC28_2519 SM00829 Enoylreductase MC28_2523 SM01276 MC28_2523 MC28_2524 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MC28_2524 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_2540 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_2542 SM00530 Helix-turn-helix XRE-family like proteins MC28_2544 SM00914 MC28_2544 MC28_2550 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_2550 SM00866 MC28_2550 MC28_2560 SM00849 Metallo-beta-lactamase superfamily MC28_2573 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_2574 SM00636 MC28_2574 MC28_2581 SM00871 Bacterial transcription activator, effector binding domain MC28_2584 SM00382 ATPases associated with a variety of cellular activities MC28_2588 SM00849 Metallo-beta-lactamase superfamily MC28_2589 SM00641 Glycosyl hydrolases family 25 MC28_2602 SM00849 Metallo-beta-lactamase superfamily MC28_2603 SM00829 Enoylreductase MC28_2631 SM00829 Enoylreductase MC28_2632 SM00855 Phosphoglycerate mutase family MC28_2634 SM00533 DNA-binding domain of DNA mismatch repair MUTS family MC28_2634 SM00534 ATPase domain of DNA mismatch repair MUTS family MC28_2635 SM00642 Alpha-amylase domain MC28_2640 SM00871 Bacterial transcription activator, effector binding domain MC28_2654 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_2655 SM00829 Enoylreductase MC28_2657 SM00028 Tetratricopeptide repeats MC28_2667 SM00052 Putative diguanylate phosphodiesterase MC28_2667 SM00091 PAS domain MC28_2667 SM00267 diguanylate cyclase MC28_2672 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_2677 SM00387 Histidine kinase-like ATPases MC28_2677 SM00388 His Kinase A (phosphoacceptor) domain MC28_2678 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins MC28_2687 SM00479 MC28_2687 MC28_2688 SM00357 Cold shock protein domain MC28_2693 SM01022 MC28_2693 MC28_2704 SM00822 MC28_2704 MC28_2715 SM00852 Probable molybdopterin binding domain MC28_2722 SM00926 Molybdopterin oxidoreductase Fe4S4 domain MC28_2722 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region MC28_2743 SM00382 ATPases associated with a variety of cellular activities MC28_2746 SM00434 DNA Topoisomerase IV MC28_2747 SM00387 Histidine kinase-like ATPases MC28_2747 SM00433 TopoisomeraseII MC28_2748 SM00881 CoA binding domain MC28_2749 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MC28_2750 SM00448 cheY-homologous receiver domain MC28_2750 SM00862 Transcriptional regulatory protein, C terminal MC28_2753 SM01207 MC28_2753 MC28_2756 SM00257 Lysin motif MC28_2756 SM00636 MC28_2756 MC28_2759 SM00479 MC28_2759 MC28_2770 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain MC28_2777 SM00530 Helix-turn-helix XRE-family like proteins MC28_2783 SM00644 MC28_2783 MC28_2783 SM00701 Animal peptidoglycan recognition proteins homologous to Bacteriophage T3 lysozyme. MC28_2784 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain MC28_2787 SM00091 PAS domain MC28_2787 SM00387 Histidine kinase-like ATPases MC28_2787 SM00388 His Kinase A (phosphoacceptor) domain MC28_2792 SM01058 CarD-like/TRCF domain MC28_2810 SM00382 ATPases associated with a variety of cellular activities MC28_2822 SM00287 Bacterial SH3 domain homologues MC28_2822 SM00641 Glycosyl hydrolases family 25 MC28_2823 SM00382 ATPases associated with a variety of cellular activities MC28_2824 SM00382 ATPases associated with a variety of cellular activities MC28_2827 SM00861 Transketolase, pyrimidine binding domain MC28_2830 SM00382 ATPases associated with a variety of cellular activities MC28_2831 SM00062 Bacterial periplasmic substrate-binding proteins MC28_2834 SM00857 Resolvase, N terminal domain MC28_2839 SM00382 ATPases associated with a variety of cellular activities MC28_2851 SM00710 Parallel beta-helix repeats MC28_2864 SM01230 MC28_2864 MC28_2865 SM00422 helix_turn_helix, mercury resistance MC28_2870 SM00382 ATPases associated with a variety of cellular activities MC28_2879 SM00287 Bacterial SH3 domain homologues MC28_2882 SM00420 helix_turn_helix, Deoxyribose operon repressor MC28_2882 SM01134 MC28_2882 MC28_2888 SM00636 MC28_2888 MC28_2892 SM00411 bacterial (prokaryotic) histone like domain MC28_2898 SM00421 helix_turn_helix, Lux Regulon MC28_2901 SM00382 ATPases associated with a variety of cellular activities MC28_2906 SM00342 helix_turn_helix, arabinose operon control protein MC28_2908 SM00478 endonuclease III MC28_2915 SM00052 Putative diguanylate phosphodiesterase MC28_2915 SM00091 PAS domain MC28_2915 SM00267 diguanylate cyclase MC28_2925 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_2928 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_2928 SM00866 MC28_2928 MC28_2930 SM00148 Phospholipase C, catalytic domain (part); domain X MC28_2932 SM00257 Lysin motif MC28_2937 SM00853 MutL C terminal dimerisation domain MC28_2937 SM01340 MC28_2937 MC28_2938 SM00533 DNA-binding domain of DNA mismatch repair MUTS family MC28_2938 SM00534 ATPase domain of DNA mismatch repair MUTS family MC28_2941 SM00729 Elongator protein 3, MiaB family, Radical SAM MC28_2947 SM00322 K homology RNA-binding domain MC28_2947 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MC28_2951 SM00852 Probable molybdopterin binding domain MC28_2961 SM00382 ATPases associated with a variety of cellular activities MC28_2963 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_2963 SM00866 MC28_2963 MC28_2964 SM00382 ATPases associated with a variety of cellular activities MC28_2964 SM00843 MC28_2964 MC28_2967 SM00849 Metallo-beta-lactamase superfamily MC28_2968 SM01130 MC28_2968 MC28_2970 SM00859 Semialdehyde dehydrogenase, NAD binding domain MC28_2982 SM00644 MC28_2982 MC28_3001 SM00507 HNH nucleases MC28_3021 SM00530 Helix-turn-helix XRE-family like proteins MC28_3022 SM00530 Helix-turn-helix XRE-family like proteins MC28_3025 SM00857 Resolvase, N terminal domain MC28_3031 SM00316 Ribosomal protein S1-like RNA-binding domain MC28_3031 SM00322 K homology RNA-binding domain MC28_3032 SM01387 MC28_3032 MC28_3033 SM00904 Riboflavin kinase MC28_3039 SM00316 Ribosomal protein S1-like RNA-binding domain MC28_3039 SM00322 K homology RNA-binding domain MC28_3041 SM00479 MC28_3041 MC28_3041 SM00481 DNA polymerase alpha chain like domain MC28_3043 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MC28_3052 SM00382 ATPases associated with a variety of cellular activities MC28_3052 SM01086 C-terminal, D2-small domain, of ClpB protein MC28_3056 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain MC28_3056 SM00437 Bacterial DNA topoisomerase I DNA-binding domain MC28_3056 SM00493 MC28_3056 MC28_3058 SM00881 CoA binding domain MC28_3068 SM00382 ATPases associated with a variety of cellular activities MC28_3068 SM00962 SRP54-type protein, GTPase domain MC28_3068 SM00963 SRP54-type protein, helical bundle domain MC28_3070 SM00382 ATPases associated with a variety of cellular activities MC28_3070 SM00962 SRP54-type protein, GTPase domain MC28_3070 SM00963 SRP54-type protein, helical bundle domain MC28_3071 SM00968 SMC proteins Flexible Hinge Domain MC28_3072 SM00358 Double-stranded RNA binding motif MC28_3072 SM00535 Ribonuclease III family MC28_3074 SM00822 MC28_3074 MC28_3075 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. MC28_3078 SM00487 DEAD-like helicases superfamily MC28_3078 SM00490 helicase superfamily c-terminal domain MC28_3079 SM01120 MC28_3079 MC28_3079 SM01121 MC28_3079 MC28_3082 SM00983 Thiamin pyrophosphokinase, vitamin B1 binding domain MC28_3085 SM00220 Serine/Threonine protein kinases, catalytic domain MC28_3085 SM00740 MC28_3085 MC28_3086 SM00331 Sigma factor PP2C-like phosphatases MC28_3086 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain MC28_3091 SM00487 DEAD-like helicases superfamily MC28_3091 SM00490 helicase superfamily c-terminal domain MC28_3093 SM01409 MC28_3093 MC28_3094 SM00072 Guanylate kinase homologues. MC28_3097 SM00831 Cation transporter/ATPase, N-terminus MC28_3106 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family MC28_3109 SM00851 MGS-like domain MC28_3109 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain MC28_3109 SM01209 MC28_3109 MC28_3110 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain MC28_3115 SM00363 S4 RNA-binding domain MC28_3120 SM00363 S4 RNA-binding domain MC28_3128 SM00864 Tubulin/FtsZ family, GTPase domain MC28_3128 SM00865 Tubulin/FtsZ family, C-terminal domain MC28_3129 SM00842 Cell division protein FtsA MC28_3137 SM00740 MC28_3137 MC28_3138 SM00740 MC28_3138 MC28_3144 SM00717 SANT SWI3, ADA2, N-CoR and TFIIIB'' DNA-binding domains MC28_3150 SM00530 Helix-turn-helix XRE-family like proteins MC28_3175 SM00507 HNH nucleases MC28_3197 SM00966 SpoVT / AbrB like domain MC28_3201 SM00530 Helix-turn-helix XRE-family like proteins MC28_3202 SM00530 Helix-turn-helix XRE-family like proteins MC28_3211 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MC28_3219 SM00855 Phosphoglycerate mutase family MC28_3232 SM00878 Biotin carboxylase C-terminal domain MC28_3237 SM00670 Large family of predicted nucleotide-binding domains MC28_3242 SM00838 Elongation factor G C-terminus MC28_3260 SM00861 Transketolase, pyrimidine binding domain MC28_3266 SM00849 Metallo-beta-lactamase superfamily MC28_3279 SM00052 Putative diguanylate phosphodiesterase MC28_3297 SM00387 Histidine kinase-like ATPases MC28_3297 SM00388 His Kinase A (phosphoacceptor) domain MC28_3300 SM00354 helix_turn _helix lactose operon repressor MC28_3304 SM00642 Alpha-amylase domain MC28_3305 SM00642 Alpha-amylase domain MC28_3306 SM00382 ATPases associated with a variety of cellular activities MC28_3313 SM00382 ATPases associated with a variety of cellular activities MC28_3330 SM01007 Class II Aldolase and Adducin N-terminal domain MC28_3336 SM00267 diguanylate cyclase MC28_3343 SM01061 CAT RNA binding domain MC28_3345 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_3345 SM00866 MC28_3345 MC28_3348 SM00849 Metallo-beta-lactamase superfamily MC28_3366 SM00387 Histidine kinase-like ATPases MC28_3368 SM00936 Penicillin-binding protein 5, C-terminal domain MC28_3369 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_3370 SM00382 ATPases associated with a variety of cellular activities MC28_3374 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_3378 SM00941 Pyrimidine nucleoside phosphorylase C-terminal domain MC28_3397 SM00354 helix_turn _helix lactose operon repressor MC28_3401 SM00704 CDGSH-type zinc finger. Function unknown. MC28_3407 SM00729 Elongator protein 3, MiaB family, Radical SAM MC28_3407 SM00876 Biotin and Thiamin Synthesis associated domain MC28_3417 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_3424 SM00859 Semialdehyde dehydrogenase, NAD binding domain MC28_3427 SM00849 Metallo-beta-lactamase superfamily MC28_3433 SM00849 Metallo-beta-lactamase superfamily MC28_3435 SM00831 Cation transporter/ATPase, N-terminus MC28_3443 SM00382 ATPases associated with a variety of cellular activities MC28_3445 SM00062 Bacterial periplasmic substrate-binding proteins MC28_3445 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. MC28_3452 SM00861 Transketolase, pyrimidine binding domain MC28_3456 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase MC28_3458 SM00091 PAS domain MC28_3458 SM00382 ATPases associated with a variety of cellular activities MC28_3464 SM00448 cheY-homologous receiver domain MC28_3465 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MC28_3468 SM00363 S4 RNA-binding domain MC28_3469 SM00861 Transketolase, pyrimidine binding domain MC28_3476 SM00878 Biotin carboxylase C-terminal domain MC28_3486 SM00382 ATPases associated with a variety of cellular activities MC28_3490 SM00841 Elongation factor P, C-terminal MC28_3490 SM01185 MC28_3490 MC28_3497 SM00529 Helix-turn-helix diphteria tox regulatory element MC28_3503 SM00450 Rhodanese Homology Domain MC28_3505 SM00354 helix_turn _helix lactose operon repressor MC28_3513 SM00382 ATPases associated with a variety of cellular activities MC28_3514 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_3520 SM00487 DEAD-like helicases superfamily MC28_3520 SM00490 helicase superfamily c-terminal domain MC28_3528 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. MC28_3535 SM00382 ATPases associated with a variety of cellular activities MC28_3546 SM01018 B12 binding domain MC28_3552 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_3554 SM00849 Metallo-beta-lactamase superfamily MC28_3561 SM00382 ATPases associated with a variety of cellular activities MC28_3573 SM00382 ATPases associated with a variety of cellular activities MC28_3576 SM00518 AP endonuclease family 2 MC28_3577 SM00487 DEAD-like helicases superfamily MC28_3577 SM00490 helicase superfamily c-terminal domain MC28_3585 SM00400 zinc finger MC28_3585 SM00493 MC28_3585 MC28_3585 SM00766 DNA primase DnaG DnaB-binding MC28_3588 SM00116 Domain in cystathionine beta-synthase and other proteins. MC28_3595 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MC28_3601 SM00729 Elongator protein 3, MiaB family, Radical SAM MC28_3604 SM00271 DnaJ molecular chaperone homology domain MC28_3608 SM00729 Elongator protein 3, MiaB family, Radical SAM MC28_3610 SM00838 Elongation factor G C-terminus MC28_3617 SM00849 Metallo-beta-lactamase superfamily MC28_3619 SM00278 Helix-hairpin-helix DNA-binding motif class 1 MC28_3623 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MC28_3625 SM01103 MC28_3625 MC28_3636 SM00954 Region found in RelA / SpoT proteins MC28_3638 SM00098 Alkaline phosphatase homologues MC28_3643 SM00855 Phosphoglycerate mutase family MC28_3652 SM00530 Helix-turn-helix XRE-family like proteins MC28_3657 SM00382 ATPases associated with a variety of cellular activities MC28_3677 SM00732 Likely ribonuclease with RNase H fold. MC28_3679 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain MC28_3686 SM00028 Tetratricopeptide repeats MC28_3690 SM00382 ATPases associated with a variety of cellular activities MC28_3699 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MC28_3699 SM00954 Region found in RelA / SpoT proteins MC28_3708 SM01323 MC28_3708 MC28_3712 SM00382 ATPases associated with a variety of cellular activities MC28_3713 SM00278 Helix-hairpin-helix DNA-binding motif class 1 MC28_3718 SM00257 Lysin motif MC28_3729 SM00382 ATPases associated with a variety of cellular activities MC28_3730 SM00387 Histidine kinase-like ATPases MC28_3731 SM00448 cheY-homologous receiver domain MC28_3731 SM00862 Transcriptional regulatory protein, C terminal MC28_3733 SM01317 MC28_3733 MC28_3752 SM00257 Lysin motif MC28_3754 SM01004 Delta-aminolevulinic acid dehydratase MC28_3759 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_3762 SM00382 ATPases associated with a variety of cellular activities MC28_3762 SM00464 Found in ATP-dependent protease La (LON) MC28_3763 SM00382 ATPases associated with a variety of cellular activities MC28_3764 SM00382 ATPases associated with a variety of cellular activities MC28_3764 SM00994 ClpX C4-type zinc finger MC28_3764 SM01086 C-terminal, D2-small domain, of ClpB protein MC28_3773 SM00909 Sporulation and spore germination MC28_3779 SM00421 helix_turn_helix, Lux Regulon MC28_3783 SM00530 Helix-turn-helix XRE-family like proteins MC28_3788 SM00382 ATPases associated with a variety of cellular activities MC28_3798 SM00465 GIY-YIG type nucleases (URI domain) MC28_3800 SM00893 Electron transfer flavoprotein domain MC28_3801 SM00893 Electron transfer flavoprotein domain MC28_3816 SM00382 ATPases associated with a variety of cellular activities MC28_3817 SM00387 Histidine kinase-like ATPases MC28_3817 SM00388 His Kinase A (phosphoacceptor) domain MC28_3818 SM00448 cheY-homologous receiver domain MC28_3818 SM00862 Transcriptional regulatory protein, C terminal MC28_3821 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase MC28_3824 SM00382 ATPases associated with a variety of cellular activities MC28_3827 SM00725 NEAr Transporter domain MC28_3828 SM00725 NEAr Transporter domain MC28_3829 SM00725 NEAr Transporter domain MC28_3831 SM00363 S4 RNA-binding domain MC28_3832 SM00463 Small MutS-related domain MC28_3832 SM00533 DNA-binding domain of DNA mismatch repair MUTS family MC28_3832 SM00534 ATPase domain of DNA mismatch repair MUTS family MC28_3833 SM00278 Helix-hairpin-helix DNA-binding motif class 1 MC28_3833 SM00481 DNA polymerase alpha chain like domain MC28_3833 SM00483 DNA polymerase X family MC28_3840 SM00873 B3/4 domain MC28_3840 SM00874 tRNA synthetase B5 domain MC28_3840 SM00896 Ferredoxin-fold anticodon binding domain MC28_3842 SM00967 RNA 2'-O ribose methyltransferase substrate binding MC28_3844 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MC28_3855 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain MC28_3857 SM00382 ATPases associated with a variety of cellular activities MC28_3861 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MC28_3864 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain MC28_3864 SM01232 MC28_3864 MC28_3865 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs MC28_3865 SM00474 3'-5' exonuclease MC28_3865 SM00475 5'-3' exonuclease MC28_3865 SM00482 DNA polymerase A domain MC28_3866 SM00091 PAS domain MC28_3866 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_3866 SM00387 Histidine kinase-like ATPases MC28_3866 SM00388 His Kinase A (phosphoacceptor) domain MC28_3867 SM00448 cheY-homologous receiver domain MC28_3867 SM00862 Transcriptional regulatory protein, C terminal MC28_3871 SM01329 MC28_3871 MC28_3880 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_3881 SM00919 Malic enzyme, NAD binding domain MC28_3881 SM01274 MC28_3881 MC28_3882 SM00481 DNA polymerase alpha chain like domain MC28_3888 SM00116 Domain in cystathionine beta-synthase and other proteins. MC28_3890 SM00849 Metallo-beta-lactamase superfamily MC28_3900 SM01002 Alanine dehydrogenase/PNT, C-terminal domain MC28_3900 SM01003 Alanine dehydrogenase/PNT, N-terminal domain MC28_3925 SM00981 MC28_3925 MC28_3933 SM00363 S4 RNA-binding domain MC28_3933 SM01390 MC28_3933 MC28_3937 SM00363 S4 RNA-binding domain MC28_3941 SM01266 MC28_3941 MC28_3944 SM00116 Domain in cystathionine beta-synthase and other proteins. MC28_3948 SM00448 cheY-homologous receiver domain MC28_3948 SM00862 Transcriptional regulatory protein, C terminal MC28_3949 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_3949 SM00387 Histidine kinase-like ATPases MC28_3949 SM00388 His Kinase A (phosphoacceptor) domain MC28_3950 SM00248 ankyrin repeats MC28_3956 SM00354 helix_turn _helix lactose operon repressor MC28_3966 SM00422 helix_turn_helix, mercury resistance MC28_3969 SM00382 ATPases associated with a variety of cellular activities MC28_3969 SM00843 MC28_3969 MC28_3970 SM00646 MC28_3970 MC28_3978 SM00849 Metallo-beta-lactamase superfamily MC28_3982 SM00642 Alpha-amylase domain MC28_3986 SM00363 S4 RNA-binding domain MC28_3990 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_3994 SM01058 CarD-like/TRCF domain MC28_4001 SM00852 Probable molybdopterin binding domain MC28_4004 SM00729 Elongator protein 3, MiaB family, Radical SAM MC28_4008 SM00450 Rhodanese Homology Domain MC28_4030 SM00729 Elongator protein 3, MiaB family, Radical SAM MC28_4032 SM00382 ATPases associated with a variety of cellular activities MC28_4035 SM00116 Domain in cystathionine beta-synthase and other proteins. MC28_4035 SM01091 Transporter associated domain MC28_4039 SM01260 MC28_4039 MC28_4047 SM00014 Acid phosphatase homologues MC28_4050 SM00852 Probable molybdopterin binding domain MC28_4061 SM00387 Histidine kinase-like ATPases MC28_4062 SM00387 Histidine kinase-like ATPases MC28_4062 SM00388 His Kinase A (phosphoacceptor) domain MC28_4069 SM00382 ATPases associated with a variety of cellular activities MC28_4081 SM00947 Carbonic anhydrase MC28_4095 SM00899 MC28_4095 MC28_4097 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_4097 SM00387 Histidine kinase-like ATPases MC28_4097 SM00388 His Kinase A (phosphoacceptor) domain MC28_4098 SM00448 cheY-homologous receiver domain MC28_4098 SM00862 Transcriptional regulatory protein, C terminal MC28_4104 SM00046 Diacylglycerol kinase catalytic domain (presumed) MC28_4109 SM00382 ATPases associated with a variety of cellular activities MC28_4116 SM00382 ATPases associated with a variety of cellular activities MC28_4117 SM00342 helix_turn_helix, arabinose operon control protein MC28_4117 SM00871 Bacterial transcription activator, effector binding domain MC28_4121 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_4125 SM00448 cheY-homologous receiver domain MC28_4125 SM00862 Transcriptional regulatory protein, C terminal MC28_4126 SM00387 Histidine kinase-like ATPases MC28_4129 SM00382 ATPases associated with a variety of cellular activities MC28_4133 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_4133 SM00866 MC28_4133 MC28_4139 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_4139 SM00387 Histidine kinase-like ATPases MC28_4139 SM00388 His Kinase A (phosphoacceptor) domain MC28_4140 SM00448 cheY-homologous receiver domain MC28_4140 SM00862 Transcriptional regulatory protein, C terminal MC28_4141 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MC28_4149 SM00357 Cold shock protein domain MC28_4157 SM00642 Alpha-amylase domain MC28_4168 SM00316 Ribosomal protein S1-like RNA-binding domain MC28_4170 SM00344 helix_turn_helix ASNC type MC28_4177 SM01298 MC28_4177 MC28_4196 SM00871 Bacterial transcription activator, effector binding domain MC28_4207 SM00382 ATPases associated with a variety of cellular activities MC28_4221 SM00382 ATPases associated with a variety of cellular activities MC28_4233 SM00422 helix_turn_helix, mercury resistance MC28_4236 SM00855 Phosphoglycerate mutase family MC28_4238 SM00729 Elongator protein 3, MiaB family, Radical SAM MC28_4247 SM00382 ATPases associated with a variety of cellular activities MC28_4251 SM00382 ATPases associated with a variety of cellular activities MC28_4251 SM00930 MC28_4251 MC28_4255 SM00493 MC28_4255 MC28_4270 SM00849 Metallo-beta-lactamase superfamily MC28_4280 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MC28_4280 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_4292 SM00530 Helix-turn-helix XRE-family like proteins MC28_4297 SM00448 cheY-homologous receiver domain MC28_4297 SM00862 Transcriptional regulatory protein, C terminal MC28_4298 SM00387 Histidine kinase-like ATPases MC28_4298 SM00388 His Kinase A (phosphoacceptor) domain MC28_4302 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MC28_4302 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_4303 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MC28_4303 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_4307 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_4332 SM00363 S4 RNA-binding domain MC28_4334 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain MC28_4335 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MC28_4342 SM00382 ATPases associated with a variety of cellular activities MC28_4348 SM00344 helix_turn_helix ASNC type MC28_4350 SM00344 helix_turn_helix ASNC type MC28_4351 SM00947 Carbonic anhydrase MC28_4352 SM01116 MC28_4352 MC28_4355 SM00382 ATPases associated with a variety of cellular activities MC28_4359 SM00448 cheY-homologous receiver domain MC28_4359 SM00862 Transcriptional regulatory protein, C terminal MC28_4361 SM00316 Ribosomal protein S1-like RNA-binding domain MC28_4361 SM00357 Cold shock protein domain MC28_4361 SM00955 MC28_4361 MC28_4367 SM01192 MC28_4367 MC28_4367 SM01193 MC28_4367 MC28_4371 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain MC28_4393 SM00028 Tetratricopeptide repeats MC28_4402 SM00487 DEAD-like helicases superfamily MC28_4402 SM00490 helicase superfamily c-terminal domain MC28_4404 SM00422 helix_turn_helix, mercury resistance MC28_4406 SM00530 Helix-turn-helix XRE-family like proteins MC28_4409 SM00422 helix_turn_helix, mercury resistance MC28_4411 SM00382 ATPases associated with a variety of cellular activities MC28_4415 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MC28_4415 SM00245 tail specific protease MC28_4417 SM00382 ATPases associated with a variety of cellular activities MC28_4422 SM00957 SecA DEAD-like domain MC28_4422 SM00958 SecA preprotein cross-linking domain MC28_4425 SM00357 Cold shock protein domain MC28_4427 SM00487 DEAD-like helicases superfamily MC28_4427 SM00490 helicase superfamily c-terminal domain MC28_4434 SM00984 UDP binding domain MC28_4437 SM00382 ATPases associated with a variety of cellular activities MC28_4438 SM00754 A domain in the BMP inhibitor chordin and in microbial proteins. MC28_4469 SM00287 Bacterial SH3 domain homologues MC28_4475 SM00287 Bacterial SH3 domain homologues MC28_4478 SM00487 DEAD-like helicases superfamily MC28_4478 SM00490 helicase superfamily c-terminal domain MC28_4487 SM00382 ATPases associated with a variety of cellular activities MC28_4492 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_4492 SM00387 Histidine kinase-like ATPases MC28_4492 SM00388 His Kinase A (phosphoacceptor) domain MC28_4493 SM00448 cheY-homologous receiver domain MC28_4493 SM00862 Transcriptional regulatory protein, C terminal MC28_4501 SM00984 UDP binding domain MC28_4521 SM00382 ATPases associated with a variety of cellular activities MC28_4522 SM00850 LytTr DNA-binding domain MC28_4538 SM00052 Putative diguanylate phosphodiesterase MC28_4538 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MC28_4538 SM00091 PAS domain MC28_4538 SM00267 diguanylate cyclase MC28_4542 SM00382 ATPases associated with a variety of cellular activities MC28_4556 SM00226 Low molecular weight phosphatase family MC28_4559 SM00903 Flavin reductase like domain MC28_4566 SM00937 MC28_4566 MC28_4568 SM00357 Cold shock protein domain MC28_4568 SM00382 ATPases associated with a variety of cellular activities MC28_4568 SM00959 Rho termination factor, N-terminal domain MC28_4582 SM00155 Phospholipase D. Active site motifs. MC28_4584 SM00052 Putative diguanylate phosphodiesterase MC28_4584 SM00091 PAS domain MC28_4584 SM00267 diguanylate cyclase MC28_4586 SM00530 Helix-turn-helix XRE-family like proteins MC28_4588 SM00421 helix_turn_helix, Lux Regulon MC28_4588 SM00448 cheY-homologous receiver domain MC28_4591 SM00382 ATPases associated with a variety of cellular activities MC28_4598 SM00836 DALR anticodon binding domain MC28_4598 SM01016 Arginyl tRNA synthetase N terminal dom MC28_4606 SM00422 helix_turn_helix, mercury resistance MC28_4612 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. MC28_4614 SM00382 ATPases associated with a variety of cellular activities MC28_4622 SM00936 Penicillin-binding protein 5, C-terminal domain MC28_4631 SM00986 Uracil DNA glycosylase superfamily MC28_4631 SM00987 UreE urease accessory protein, C-terminal domain MC28_4633 SM00382 ATPases associated with a variety of cellular activities MC28_4635 SM00354 helix_turn _helix lactose operon repressor MC28_4642 SM00100 Cyclic nucleotide-monophosphate binding domain MC28_4644 SM00421 helix_turn_helix, Lux Regulon MC28_4644 SM00448 cheY-homologous receiver domain MC28_4645 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. MC28_4647 SM00267 diguanylate cyclase MC28_4650 SM00850 LytTr DNA-binding domain MC28_4657 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MC28_4664 SM00382 ATPases associated with a variety of cellular activities MC28_4674 SM00448 cheY-homologous receiver domain MC28_4674 SM00850 LytTr DNA-binding domain MC28_4675 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. MC28_4675 SM00387 Histidine kinase-like ATPases MC28_4686 SM00487 DEAD-like helicases superfamily MC28_4686 SM00490 helicase superfamily c-terminal domain MC28_4688 SM01240 MC28_4688 MC28_4693 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MC28_4694 SM00849 Metallo-beta-lactamase superfamily MC28_4697 SM00091 PAS domain MC28_4697 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_4697 SM00387 Histidine kinase-like ATPases MC28_4697 SM00388 His Kinase A (phosphoacceptor) domain MC28_4698 SM00448 cheY-homologous receiver domain MC28_4698 SM00862 Transcriptional regulatory protein, C terminal MC28_4699 SM00788 Adenylosuccinate synthetase MC28_4702 SM00267 diguanylate cyclase MC28_4711 SM00470 ParB-like nuclease domain MC28_4713 SM00470 ParB-like nuclease domain MC28_4715 SM01228 MC28_4715 MC28_4717 SM00393 Putative single-stranded nucleic acids-binding domain MC28_4717 SM01245 MC28_4717 MC28_4721 SM00382 ATPases associated with a variety of cellular activities MC28_4721 SM00760 Bacterial dnaA protein helix-turn-helix domain MC28_4722 SM00480 DNA polymerase III beta subunit MC28_4725 SM00387 Histidine kinase-like ATPases MC28_4725 SM00433 TopoisomeraseII MC28_4726 SM00434 DNA Topoisomerase IV MC28_4728 SM00116 Domain in cystathionine beta-synthase and other proteins. MC28_4728 SM01240 MC28_4728 MC28_4729 SM00936 Penicillin-binding protein 5, C-terminal domain MC28_4738 SM00382 ATPases associated with a variety of cellular activities MC28_4740 SM00493 MC28_4740 MC28_4752 SM00966 SpoVT / AbrB like domain MC28_4755 SM00493 MC28_4755 MC28_4756 SM00650 Ribosomal RNA adenine dimethylases MC28_4765 SM01400 MC28_4765 MC28_4768 SM00487 DEAD-like helicases superfamily MC28_4768 SM00490 helicase superfamily c-terminal domain MC28_4768 SM00982 MC28_4768 MC28_4768 SM01058 CarD-like/TRCF domain MC28_4769 SM00966 SpoVT / AbrB like domain MC28_4771 SM00363 S4 RNA-binding domain MC28_4775 SM00316 Ribosomal protein S1-like RNA-binding domain MC28_4776 SM00331 Sigma factor PP2C-like phosphatases MC28_4776 SM00332 Serine/threonine phosphatases, family 2C, catalytic domain MC28_4777 SM00977 TilS substrate C-terminal domain MC28_4779 SM00382 ATPases associated with a variety of cellular activities MC28_4787 SM00905 Dihydroneopterin aldolase MC28_4794 SM00382 ATPases associated with a variety of cellular activities MC28_4794 SM01086 C-terminal, D2-small domain, of ClpB protein MC28_4795 SM00382 ATPases associated with a variety of cellular activities MC28_4797 SM00670 Large family of predicted nucleotide-binding domains MC28_4802 SM00840 MC28_4802 MC28_4803 SM00535 Ribonuclease III family MC28_4804 SM00967 RNA 2'-O ribose methyltransferase substrate binding MC28_4806 SM00421 helix_turn_helix, Lux Regulon MC28_4808 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. MC28_4809 SM00649 Ribosomal protein L11/L12 MC28_4815 SM00663 RNA polymerase I subunit A N-terminus MC28_4819 SM00838 Elongation factor G C-terminus MC28_4819 SM00889 Elongation factor G, domain IV MC28_4821 SM01403 MC28_4821 MC28_4825 SM01382 MC28_4825 MC28_4825 SM01383 MC28_4825 MC28_4828 SM00322 K homology RNA-binding domain MC28_4832 SM01374 MC28_4832 MC28_4833 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. MC28_4845 SM00316 Ribosomal protein S1-like RNA-binding domain MC28_4849 SM00662 RNA polymerases D MC28_4851 SM00382 ATPases associated with a variety of cellular activities MC28_4852 SM00382 ATPases associated with a variety of cellular activities MC28_4858 SM00646 MC28_4858 MC28_4861 SM01251 MC28_4861 MC28_4877 SM00382 ATPases associated with a variety of cellular activities MC28_4877 SM00930 MC28_4877 MC28_4879 SM00829 Enoylreductase MC28_4889 SM00382 ATPases associated with a variety of cellular activities MC28_4893 SM00342 helix_turn_helix, arabinose operon control protein MC28_4906 SM00354 helix_turn _helix lactose operon repressor MC28_4916 SM00382 ATPases associated with a variety of cellular activities MC28_4921 SM00382 ATPases associated with a variety of cellular activities MC28_4922 SM00382 ATPases associated with a variety of cellular activities MC28_4936 SM00487 DEAD-like helicases superfamily MC28_4936 SM00490 helicase superfamily c-terminal domain MC28_4941 SM01005 Alanine racemase, C-terminal domain MC28_4944 SM00316 Ribosomal protein S1-like RNA-binding domain MC28_4944 SM00732 Likely ribonuclease with RNase H fold. MC28_4945 SM00731 SprT homologues. MC28_4950 SM00382 ATPases associated with a variety of cellular activities MC28_4951 SM00881 CoA binding domain MC28_4954 SM00883 Chaperonin 10 Kd subunit MC28_4971 SM00448 cheY-homologous receiver domain MC28_4971 SM00862 Transcriptional regulatory protein, C terminal MC28_4972 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_4972 SM00387 Histidine kinase-like ATPases MC28_4972 SM00388 His Kinase A (phosphoacceptor) domain MC28_4984 SM01022 MC28_4984 MC28_4988 SM00387 Histidine kinase-like ATPases MC28_4988 SM00388 His Kinase A (phosphoacceptor) domain MC28_4989 SM00448 cheY-homologous receiver domain MC28_4989 SM00862 Transcriptional regulatory protein, C terminal MC28_5004 SM00998 Adenylosuccinate lyase C-terminus MC28_5007 SM01211 MC28_5007 MC28_5013 SM00798 AICARFT/IMPCHase bienzyme MC28_5013 SM00851 MGS-like domain MC28_5014 SM01209 MC28_5014 MC28_5014 SM01210 MC28_5014 MC28_5016 SM00244 prohibitin homologues MC28_5021 SM00278 Helix-hairpin-helix DNA-binding motif class 1 MC28_5021 SM00292 breast cancer carboxy-terminal domain MC28_5021 SM00532 Ligase N family MC28_5026 SM00382 ATPases associated with a variety of cellular activities MC28_5026 SM00930 MC28_5026 MC28_5032 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_5036 SM00845 GatB domain MC28_5037 SM00046 Diacylglycerol kinase catalytic domain (presumed) MC28_5040 SM00382 ATPases associated with a variety of cellular activities MC28_5050 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. MC28_5050 SM00387 Histidine kinase-like ATPases MC28_5050 SM00388 His Kinase A (phosphoacceptor) domain MC28_5054 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain MC28_5063 SM01007 Class II Aldolase and Adducin N-terminal domain MC28_5074 SM00387 Histidine kinase-like ATPases MC28_5074 SM00388 His Kinase A (phosphoacceptor) domain MC28_5083 SM00062 Bacterial periplasmic substrate-binding proteins MC28_5083 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. MC28_5084 SM00382 ATPases associated with a variety of cellular activities MC28_5085 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MC28_5085 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_5091 SM00100 Cyclic nucleotide-monophosphate binding domain MC28_5091 SM00419 helix_turn_helix, cAMP Regulatory protein MC28_5094 SM00642 Alpha-amylase domain MC28_5098 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain MC28_5098 SM00437 Bacterial DNA topoisomerase I DNA-binding domain MC28_5098 SM00493 MC28_5098 MC28_5103 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MC28_5103 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_5108 SM00382 ATPases associated with a variety of cellular activities MC28_5109 SM00060 Fibronectin type 3 domain MC28_5109 SM00636 MC28_5109 MC28_5109 SM00637 MC28_5109 MC28_5116 SM00530 Helix-turn-helix XRE-family like proteins MC28_5120 SM00946 Prolyl-tRNA synthetase, C-terminal MC28_5122 SM00047 Lysozyme subfamily 2 MC28_5122 SM00287 Bacterial SH3 domain homologues MC28_5130 SM00831 Cation transporter/ATPase, N-terminus MC28_5132 SM00226 Low molecular weight phosphatase family MC28_5150 SM00478 endonuclease III MC28_5159 SM00530 Helix-turn-helix XRE-family like proteins MC28_5161 SM01040 BRO family, N-terminal domain MC28_5166 SM00382 ATPases associated with a variety of cellular activities MC28_5182 SM00530 Helix-turn-helix XRE-family like proteins MC28_5208 SM00506 Appr-1"-p processing enzyme MC28_5212 SM00644 MC28_5212 MC28_5217 SM00382 ATPases associated with a variety of cellular activities MC28_5221 SM00530 Helix-turn-helix XRE-family like proteins MC28_5232 SM00984 UDP binding domain MC28_5247 SM00478 endonuclease III MC28_5247 SM00525 MC28_5247 MC28_5252 SM00382 ATPases associated with a variety of cellular activities MC28_5256 SM00382 ATPases associated with a variety of cellular activities MC28_5269 SM00567 E-Z type HEAT repeats MC28_5272 SM00052 Putative diguanylate phosphodiesterase MC28_5272 SM00091 PAS domain MC28_5272 SM00267 diguanylate cyclase MC28_5273 SM00763 PrkA AAA domain MC28_5275 SM00365 Leucine-rich repeat, SDS22-like subfamily MC28_5275 SM00369 Leucine-rich repeats, typical (most populated) subfamily MC28_5275 SM00725 NEAr Transporter domain MC28_5277 SM00089 Repeats in polycystic kidney disease 1 (PKD1) and other proteins MC28_5279 SM00244 prohibitin homologues MC28_5280 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MC28_5280 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_5281 SM00091 PAS domain MC28_5281 SM00387 Histidine kinase-like ATPases MC28_5282 SM00448 cheY-homologous receiver domain MC28_5286 SM00248 ankyrin repeats MC28_5289 SM00382 ATPases associated with a variety of cellular activities MC28_5294 SM00448 cheY-homologous receiver domain MC28_5294 SM00862 Transcriptional regulatory protein, C terminal MC28_5295 SM00387 Histidine kinase-like ATPases MC28_5295 SM00388 His Kinase A (phosphoacceptor) domain MC28_5298 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MC28_5298 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_5299 SM00387 Histidine kinase-like ATPases MC28_5300 SM00448 cheY-homologous receiver domain MC28_5302 SM00919 Malic enzyme, NAD binding domain MC28_5302 SM01274 MC28_5302 MC28_5307 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_5307 SM00387 Histidine kinase-like ATPases MC28_5307 SM00388 His Kinase A (phosphoacceptor) domain MC28_5308 SM00448 cheY-homologous receiver domain MC28_5308 SM00862 Transcriptional regulatory protein, C terminal MC28_5313 SM00926 Molybdopterin oxidoreductase Fe4S4 domain MC28_5313 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region MC28_5317 SM01002 Alanine dehydrogenase/PNT, C-terminal domain MC28_5317 SM01003 Alanine dehydrogenase/PNT, N-terminal domain MC28_5321 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_5324 SM00028 Tetratricopeptide repeats MC28_5324 SM00530 Helix-turn-helix XRE-family like proteins MC28_5334 SM01091 Transporter associated domain MC28_5337 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_5343 SM00382 ATPases associated with a variety of cellular activities MC28_5348 SM00327 von Willebrand factor (vWF) type A domain MC28_5349 SM00382 ATPases associated with a variety of cellular activities MC28_5350 SM00155 Phospholipase D. Active site motifs. MC28_5353 SM00052 Putative diguanylate phosphodiesterase MC28_5353 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) MC28_5353 SM00267 diguanylate cyclase MC28_5355 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_5355 SM00866 MC28_5355 MC28_5357 SM00642 Alpha-amylase domain MC28_5361 SM00387 Histidine kinase-like ATPases MC28_5362 SM00421 helix_turn_helix, Lux Regulon MC28_5362 SM00448 cheY-homologous receiver domain MC28_5367 SM00382 ATPases associated with a variety of cellular activities MC28_5368 SM00062 Bacterial periplasmic substrate-binding proteins MC28_5368 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. MC28_5378 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_5378 SM00387 Histidine kinase-like ATPases MC28_5378 SM00388 His Kinase A (phosphoacceptor) domain MC28_5379 SM00448 cheY-homologous receiver domain MC28_5379 SM00862 Transcriptional regulatory protein, C terminal MC28_5385 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_5387 SM00354 helix_turn _helix lactose operon repressor MC28_5390 SM00382 ATPases associated with a variety of cellular activities MC28_5399 SM00829 Enoylreductase MC28_5401 SM00770 Zinc dependent phospholipase C (alpha toxin) MC28_5410 SM00530 Helix-turn-helix XRE-family like proteins MC28_5421 SM00530 Helix-turn-helix XRE-family like proteins MC28_5440 SM00899 MC28_5440 MC28_A09 SM00530 Helix-turn-helix XRE-family like proteins MC28_B23 SM00644 MC28_B23 MC28_B41 SM00530 Helix-turn-helix XRE-family like proteins MC28_B45 SM00530 Helix-turn-helix XRE-family like proteins MC28_B46 SM00530 Helix-turn-helix XRE-family like proteins MC28_C023 SM00530 Helix-turn-helix XRE-family like proteins MC28_C024 SM00530 Helix-turn-helix XRE-family like proteins MC28_C054 SM00966 SpoVT / AbrB like domain MC28_C056 SM00411 bacterial (prokaryotic) histone like domain MC28_C057 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_C063 SM00857 Resolvase, N terminal domain MC28_C065 SM00148 Phospholipase C, catalytic domain (part); domain X MC28_C065 SM00458 Ricin-type beta-trefoil MC28_C066 SM00857 Resolvase, N terminal domain MC28_C068 SM00148 Phospholipase C, catalytic domain (part); domain X MC28_C085 SM00382 ATPases associated with a variety of cellular activities MC28_D048 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain MC28_D048 SM00437 Bacterial DNA topoisomerase I DNA-binding domain MC28_D048 SM00493 MC28_D048 MC28_D061 SM00857 Resolvase, N terminal domain MC28_D075 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_D137 SM00506 Appr-1"-p processing enzyme MC28_D138 SM00487 DEAD-like helicases superfamily MC28_D138 SM00490 helicase superfamily c-terminal domain MC28_D148 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain MC28_D148 SM00437 Bacterial DNA topoisomerase I DNA-binding domain MC28_D148 SM00493 MC28_D148 MC28_D153 SM00857 Resolvase, N terminal domain MC28_D158 SM00028 Tetratricopeptide repeats MC28_D169 SM00857 Resolvase, N terminal domain MC28_D171 SM00458 Ricin-type beta-trefoil MC28_E019 SM00530 Helix-turn-helix XRE-family like proteins MC28_E020 SM00530 Helix-turn-helix XRE-family like proteins MC28_E044 SM00530 Helix-turn-helix XRE-family like proteins MC28_E051 SM00458 Ricin-type beta-trefoil MC28_E065 SM00148 Phospholipase C, catalytic domain (part); domain X MC28_E065 SM00458 Ricin-type beta-trefoil MC28_E068 SM00984 UDP binding domain MC28_E071 SM00148 Phospholipase C, catalytic domain (part); domain X MC28_E079 SM00148 Phospholipase C, catalytic domain (part); domain X MC28_E079 SM00458 Ricin-type beta-trefoil MC28_E108 SM00507 HNH nucleases MC28_E118 SM00966 SpoVT / AbrB like domain MC28_E123 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_E138 SM00148 Phospholipase C, catalytic domain (part); domain X MC28_E146 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_E155 SM00857 Resolvase, N terminal domain MC28_E158 SM00148 Phospholipase C, catalytic domain (part); domain X MC28_E164 SM00458 Ricin-type beta-trefoil MC28_E169 SM00507 HNH nucleases MC28_E171 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain MC28_E171 SM00437 Bacterial DNA topoisomerase I DNA-binding domain MC28_E171 SM00493 MC28_E171 MC28_E182 SM00507 HNH nucleases MC28_F012 SM00507 HNH nucleases MC28_F032 SM00530 Helix-turn-helix XRE-family like proteins MC28_F033 SM00530 Helix-turn-helix XRE-family like proteins MC28_F048 SM00729 Elongator protein 3, MiaB family, Radical SAM MC28_F053 SM00849 Metallo-beta-lactamase superfamily MC28_F056 SM00100 Cyclic nucleotide-monophosphate binding domain MC28_F056 SM00419 helix_turn_helix, cAMP Regulatory protein MC28_F062 SM01002 Alanine dehydrogenase/PNT, C-terminal domain MC28_F062 SM01003 Alanine dehydrogenase/PNT, N-terminal domain MC28_F065 SM00487 DEAD-like helicases superfamily MC28_F065 SM00490 helicase superfamily c-terminal domain MC28_F075 SM00382 ATPases associated with a variety of cellular activities MC28_F076 SM00507 HNH nucleases MC28_F080 SM00530 Helix-turn-helix XRE-family like proteins MC28_F082 SM00857 Resolvase, N terminal domain MC28_F083 SM00857 Resolvase, N terminal domain MC28_F084 SM00060 Fibronectin type 3 domain MC28_F084 SM00495 Chitin-binding domain type 3 MC28_F084 SM01276 MC28_F084 MC28_F089 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_F097 SM00411 bacterial (prokaryotic) histone like domain MC28_F101 SM00148 Phospholipase C, catalytic domain (part); domain X MC28_F106 SM00060 Fibronectin type 3 domain MC28_F106 SM00495 Chitin-binding domain type 3 MC28_F112 SM01120 MC28_F112 MC28_F124 SM00060 Fibronectin type 3 domain MC28_F124 SM00495 Chitin-binding domain type 3 MC28_F124 SM01276 MC28_F124 MC28_F125 SM00060 Fibronectin type 3 domain MC28_F125 SM00495 Chitin-binding domain type 3 MC28_F132 SM00382 ATPases associated with a variety of cellular activities MC28_F139 SM00387 Histidine kinase-like ATPases MC28_F139 SM00388 His Kinase A (phosphoacceptor) domain MC28_F140 SM00448 cheY-homologous receiver domain MC28_F140 SM00862 Transcriptional regulatory protein, C terminal MC28_F143 SM00382 ATPases associated with a variety of cellular activities MC28_F151 SM00420 helix_turn_helix, Deoxyribose operon repressor MC28_F151 SM01134 MC28_F151 MC28_F161 SM00530 Helix-turn-helix XRE-family like proteins MC28_F180 SM00382 ATPases associated with a variety of cellular activities MC28_F183 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. MC28_F190 SM00825 Beta-ketoacyl synthase MC28_F212 SM00382 ATPases associated with a variety of cellular activities MC28_F213 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_F218 SM00342 helix_turn_helix, arabinose operon control protein MC28_F221 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_F223 SM00382 ATPases associated with a variety of cellular activities MC28_F229 SM00382 ATPases associated with a variety of cellular activities MC28_F230 SM00860 SMI1 / KNR4 family MC28_F242 SM01002 Alanine dehydrogenase/PNT, C-terminal domain MC28_F242 SM01003 Alanine dehydrogenase/PNT, N-terminal domain MC28_F249 SM00060 Fibronectin type 3 domain MC28_F252 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_F260 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_F260 SM00895 MC28_F260 MC28_F262 SM00530 Helix-turn-helix XRE-family like proteins MC28_F289 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain MC28_F289 SM00437 Bacterial DNA topoisomerase I DNA-binding domain MC28_F289 SM00493 MC28_F289 MC28_G003 SM00382 ATPases associated with a variety of cellular activities MC28_G006 SM00354 helix_turn _helix lactose operon repressor MC28_G032 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MC28_G032 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_G032 SM00319 Homologues of the ligand binding domain of Tar MC28_G034 SM00028 Tetratricopeptide repeats MC28_G043 SM00858 MC28_G043 MC28_G053 SM00450 Rhodanese Homology Domain MC28_G053 SM00849 Metallo-beta-lactamase superfamily MC28_G057 SM00632 MC28_G057 MC28_G057 SM00642 Alpha-amylase domain MC28_G069 SM00448 cheY-homologous receiver domain MC28_G069 SM00862 Transcriptional regulatory protein, C terminal MC28_G070 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_G070 SM00387 Histidine kinase-like ATPases MC28_G070 SM00388 His Kinase A (phosphoacceptor) domain MC28_G073 SM00347 helix_turn_helix multiple antibiotic resistance protein MC28_G089 SM00382 ATPases associated with a variety of cellular activities MC28_G100 SM00530 Helix-turn-helix XRE-family like proteins MC28_G103 SM00860 SMI1 / KNR4 family MC28_G108 SM00387 Histidine kinase-like ATPases MC28_G108 SM00421 helix_turn_helix, Lux Regulon MC28_G108 SM00448 cheY-homologous receiver domain MC28_G137 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_G137 SM00387 Histidine kinase-like ATPases MC28_G137 SM00388 His Kinase A (phosphoacceptor) domain MC28_G139 SM00387 Histidine kinase-like ATPases MC28_G139 SM00388 His Kinase A (phosphoacceptor) domain MC28_G140 SM00448 cheY-homologous receiver domain MC28_G140 SM00862 Transcriptional regulatory protein, C terminal MC28_G145 SM00382 ATPases associated with a variety of cellular activities MC28_G146 SM00387 Histidine kinase-like ATPases MC28_G147 SM00448 cheY-homologous receiver domain MC28_G147 SM00862 Transcriptional regulatory protein, C terminal MC28_G150 SM00530 Helix-turn-helix XRE-family like proteins MC28_G154 SM00411 bacterial (prokaryotic) histone like domain MC28_G161 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_G161 SM00387 Histidine kinase-like ATPases MC28_G161 SM00388 His Kinase A (phosphoacceptor) domain MC28_G162 SM00448 cheY-homologous receiver domain MC28_G162 SM00862 Transcriptional regulatory protein, C terminal MC28_G163 SM00422 helix_turn_helix, mercury resistance MC28_G165 SM00382 ATPases associated with a variety of cellular activities MC28_G166 SM00448 cheY-homologous receiver domain MC28_G166 SM00862 Transcriptional regulatory protein, C terminal MC28_G167 SM00387 Histidine kinase-like ATPases MC28_G195 SM01209 MC28_G195 MC28_G201 SM00530 Helix-turn-helix XRE-family like proteins MC28_G233 SM00530 Helix-turn-helix XRE-family like proteins MC28_G251 SM00345 helix_turn_helix gluconate operon transcriptional repressor MC28_G251 SM00895 MC28_G251 MC28_G254 SM01350 MC28_G254 MC28_G270 SM00316 Ribosomal protein S1-like RNA-binding domain MC28_G274 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_G290 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_G290 SM00387 Histidine kinase-like ATPases MC28_G290 SM00388 His Kinase A (phosphoacceptor) domain MC28_G291 SM00448 cheY-homologous receiver domain MC28_G291 SM00862 Transcriptional regulatory protein, C terminal MC28_G293 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. MC28_G295 SM00382 ATPases associated with a variety of cellular activities MC28_G301 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). MC28_G301 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain MC28_G310 SM00060 Fibronectin type 3 domain MC28_G310 SM00495 Chitin-binding domain type 3 MC28_G314 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor MC28_G327 SM00849 Metallo-beta-lactamase superfamily MC28_G330 SM00530 Helix-turn-helix XRE-family like proteins MC28_G335 SM00382 ATPases associated with a variety of cellular activities MC28_G367 SM00287 Bacterial SH3 domain homologues MC28_G367 SM00644 MC28_G367 MC28_G369 SM00382 ATPases associated with a variety of cellular activities MC28_G380 SM00507 HNH nucleases MC28_G408 SM00530 Helix-turn-helix XRE-family like proteins