locus-tag class description BB0001 PF13932 GidA associated domain BB0001 PF01134 Glucose inhibited division protein A BB0002 PF02527 rRNA small subunit methyltransferase G BB0003 PF13614 AAA domain BB0005 PF02195 ParB-like nuclease domain BB0005 PF17762 HTH domain found in ParB protein BB0006 PF00710 Asparaginase, N-terminal BB0006 PF17763 Glutaminase/Asparaginase C-terminal domain BB0007 PF00009 Elongation factor Tu GTP binding domain BB0007 PF03144 Elongation factor Tu domain 2 BB0007 PF03143 Elongation factor Tu C-terminal domain BB0008 PF00584 SecE/Sec61-gamma subunits of protein translocation complex BB0009 PF00467 KOW motif BB0009 PF02357 Transcription termination factor nusG BB0010 PF00298 Ribosomal protein L11, RNA binding domain BB0010 PF03946 Ribosomal protein L11, N-terminal domain BB0011 PF00687 Ribosomal protein L1p/L10e family BB0012 PF00466 Ribosomal protein L10 BB0013 PF16320 Ribosomal protein L7/L12 dimerisation domain BB0013 PF00542 Ribosomal protein L7/L12 C-terminal domain BB0014 PF00562 RNA polymerase Rpb2, domain 6 BB0014 PF10385 RNA polymerase beta subunit external 1 domain BB0014 PF04561 RNA polymerase Rpb2, domain 2 BB0014 PF04563 RNA polymerase beta subunit BB0014 PF04560 RNA polymerase Rpb2, domain 7 BB0014 PF04565 RNA polymerase Rpb2, domain 3 BB0015 PF04998 RNA polymerase Rpb1, domain 5 BB0015 PF04997 RNA polymerase Rpb1, domain 1 BB0015 PF05000 RNA polymerase Rpb1, domain 4 BB0015 PF00623 RNA polymerase Rpb1, domain 2 BB0015 PF04983 RNA polymerase Rpb1, domain 3 BB0018 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BB0018 PF00512 His Kinase A (phospho-acceptor) domain BB0018 PF00989 PAS fold BB0018 PF11808 Phosphate regulon sensor protein PhoR BB0020 PF00072 Response regulator receiver domain BB0020 PF00486 Transcriptional regulatory protein, C terminal BB0021 PF00486 Transcriptional regulatory protein, C terminal BB0021 PF00072 Response regulator receiver domain BB0022 PF01545 Cation efflux family BB0023 PF02583 Metal-sensitive transcriptional repressor BB0024 PF00164 Ribosomal protein S12/S23 BB0025 PF00177 Ribosomal protein S7p/S5e BB0026 PF00009 Elongation factor Tu GTP binding domain BB0026 PF03144 Elongation factor Tu domain 2 BB0026 PF00679 Elongation factor G C-terminus BB0026 PF03764 Elongation factor G, domain IV BB0026 PF14492 Elongation Factor G, domain II BB0027 PF00009 Elongation factor Tu GTP binding domain BB0027 PF03144 Elongation factor Tu domain 2 BB0027 PF03143 Elongation factor Tu C-terminal domain BB0028 PF00338 Ribosomal protein S10p/S20e BB0029 PF00297 Ribosomal protein L3 BB0030 PF00573 Ribosomal protein L4/L1 family BB0031 PF00276 Ribosomal protein L23 BB0032 PF00181 Ribosomal Proteins L2, RNA binding domain BB0032 PF03947 Ribosomal Proteins L2, C-terminal domain BB0033 PF00203 Ribosomal protein S19 BB0034 PF00237 Ribosomal protein L22p/L17e BB0035 PF00189 Ribosomal protein S3, C-terminal domain BB0035 PF07650 KH domain BB0036 PF00252 Ribosomal protein L16p/L10e BB0037 PF00831 Ribosomal L29 protein BB0038 PF00366 Ribosomal protein S17 BB0040 PF00171 Aldehyde dehydrogenase family BB0041 PF00238 Ribosomal protein L14p/L23e BB0042 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 BB0043 PF00673 ribosomal L5P family C-terminus BB0043 PF00281 Ribosomal protein L5 BB0044 PF00253 Ribosomal protein S14p/S29e BB0045 PF00410 Ribosomal protein S8 BB0046 PF00347 Ribosomal protein L6 BB0047 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast BB0048 PF00333 Ribosomal protein S5, N-terminal domain BB0048 PF03719 Ribosomal protein S5, C-terminal domain BB0049 PF00327 Ribosomal protein L30p/L7e BB0050 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A BB0051 PF00344 SecY translocase BB0052 PF01176 Translation initiation factor 1A / IF-1 BB0053 PF00444 Ribosomal protein L36 BB0054 PF00416 Ribosomal protein S13/S18 BB0055 PF00411 Ribosomal protein S11 BB0056 PF01479 S4 domain BB0056 PF00163 Ribosomal protein S4/S9 N-terminal domain BB0057 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain BB0057 PF01000 RNA polymerase Rpb3/RpoA insert domain BB0057 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain BB0058 PF01196 Ribosomal protein L17 BB0059 PF01230 HIT domain BB0060 PF03091 CutA1 divalent ion tolerance protein BB0061 PF02683 Cytochrome C biogenesis protein transmembrane region BB0061 PF11412 Disulphide bond corrector protein DsbC BB0062 PF00892 EamA-like transporter family BB0063 PF00490 Delta-aminolevulinic acid dehydratase BB0064 PF01926 50S ribosome-binding GTPase BB0065 PF00034 Cytochrome c BB0066 PF05140 ResB-like family BB0067 PF01578 Cytochrome C assembly protein BB0068 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain BB0068 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BB0069 PF01491 Frataxin-like domain BB0070 PF00912 Transglycosylase BB0070 PF00905 Penicillin binding protein transpeptidase domain BB0070 PF17092 Penicillin-binding protein OB-like domain BB0071 PF01202 Shikimate kinase BB0072 PF01761 3-dehydroquinate synthase BB0073 PF13286 Phosphohydrolase-associated domain BB0073 PF01966 HD domain BB0074 PF13417 Glutathione S-transferase, N-terminal domain BB0074 PF00043 Glutathione S-transferase, C-terminal domain BB0075 PF17760 UvrA interaction domain BB0075 PF17755 UvrA DNA-binding domain BB0076 PF07690 Major Facilitator Superfamily BB0077 PF00436 Single-strand binding protein family BB0078 PF07715 TonB-dependent Receptor Plug Domain BB0078 PF00593 TonB dependent receptor BB0080 PF03328 HpcH/HpaI aldolase/citrate lyase family BB0081 PF03401 Tripartite tricarboxylate transporter family receptor BB0083 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB0083 PF03466 LysR substrate binding domain BB0085 PF03401 Tripartite tricarboxylate transporter family receptor BB0086 PF00534 Glycosyl transferases group 1 BB0086 PF13439 Glycosyltransferase Family 4 BB0088 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB0088 PF03466 LysR substrate binding domain BB0090 PF00528 Binding-protein-dependent transport system inner membrane component BB0091 PF00005 ABC transporter BB0095 PF01274 Malate synthase BB0096 PF07729 FCD domain BB0096 PF00392 Bacterial regulatory proteins, gntR family BB0099 PF01040 UbiA prenyltransferase family BB0100 PF00155 Aminotransferase class I and II BB0101 PF13185 GAF domain BB0102 PF00701 Dihydrodipicolinate synthetase family BB0108 PF13520 Amino acid permease BB0110 PF09134 Invasin, domain 3 BB0110 PF02369 Bacterial Ig-like domain (group 1) BB0110 PF11924 Inverse autotransporter, beta-domain BB0110 PF07979 Intimin C-type lectin domain BB0111 PF00732 GMC oxidoreductase BB0111 PF05199 GMC oxidoreductase BB0115 PF00152 tRNA synthetases class II (D, K and N) BB0115 PF01336 OB-fold nucleic acid binding domain BB0115 PF02938 GAD domain BB0116 PF03372 Endonuclease/Exonuclease/phosphatase family BB0117 PF13091 PLD-like domain BB0119 PF07690 Major Facilitator Superfamily BB0121 PF16363 GDP-mannose 4,6 dehydratase BB0122 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BB0123 PF13537 Glutamine amidotransferase domain BB0123 PF00733 Asparagine synthase BB0129 PF00551 Formyl transferase BB0129 PF02911 Formyl transferase, C-terminal domain BB0131 PF00005 ABC transporter BB0131 PF14524 Wzt C-terminal domain BB0132 PF14524 Wzt C-terminal domain BB0132 PF00005 ABC transporter BB0136 PF13537 Glutamine amidotransferase domain BB0136 PF00733 Asparagine synthase BB0137 PF16363 GDP-mannose 4,6 dehydratase BB0138 PF01370 NAD dependent epimerase/dehydratase family BB0139 PF16363 GDP-mannose 4,6 dehydratase BB0142 PF00733 Asparagine synthase BB0142 PF13537 Glutamine amidotransferase domain BB0144 PF13439 Glycosyltransferase Family 4 BB0144 PF00534 Glycosyl transferases group 1 BB0145 PF02719 Polysaccharide biosynthesis protein BB0147 PF10997 Alternate to MurJ BB0148 PF00534 Glycosyl transferases group 1 BB0148 PF00862 Sucrose synthase BB0149 PF02397 Bacterial sugar transferase BB0150 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BB0152 PF02350 UDP-N-acetylglucosamine 2-epimerase BB0153 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family BB0154 PF00132 Bacterial transferase hexapeptide (six repeats) BB0155 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BB0155 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BB0156 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BB0157 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) BB0157 PF00534 Glycosyl transferases group 1 BB0160 PF03309 Type III pantothenate kinase BB0163 PF02405 Permease MlaE BB0164 PF00005 ABC transporter BB0168 PF07943 Penicillin-binding protein 5, C-terminal domain BB0168 PF00768 D-alanyl-D-alanine carboxypeptidase BB0169 PF01063 Amino-transferase class IV BB0170 PF04359 Protein of unknown function (DUF493) BB0171 PF03099 Biotin/lipoate A/B protein ligase family BB0172 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family BB0172 PF04055 Radical SAM superfamily BB0173 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase BB0174 PF04321 RmlD substrate binding domain BB0175 PF16363 GDP-mannose 4,6 dehydratase BB0176 PF01923 Cobalamin adenosyltransferase BB0178 PF07724 AAA domain (Cdc48 subfamily) BB0178 PF10431 C-terminal, D2-small domain, of ClpB protein BB0178 PF00004 ATPase family associated with various cellular activities (AAA) BB0179 PF00227 Proteasome subunit BB0180 PF01258 Prokaryotic dksA/traR C4-type zinc finger BB0181 PF02492 CobW/HypB/UreG, nucleotide-binding domain BB0181 PF07683 Cobalamin synthesis protein cobW C-terminal domain BB0182 PF01475 Ferric uptake regulator family BB0183 PF00005 ABC transporter BB0184 PF00950 ABC 3 transport family BB0185 PF01297 Zinc-uptake complex component A periplasmic BB0187 PF03824 High-affinity nickel-transport protein BB0189 PF00593 TonB dependent receptor BB0189 PF07715 TonB-dependent Receptor Plug Domain BB0190 PF02899 Phage integrase, N-terminal SAM-like domain BB0190 PF00589 Phage integrase family BB0192 PF01678 Diaminopimelate epimerase BB0193 PF03279 Bacterial lipid A biosynthesis acyltransferase BB0195 PF00438 S-adenosylmethionine synthetase, N-terminal domain BB0195 PF02772 S-adenosylmethionine synthetase, central domain BB0195 PF02773 S-adenosylmethionine synthetase, C-terminal domain BB0197 PF13439 Glycosyltransferase Family 4 BB0197 PF00534 Glycosyl transferases group 1 BB0198 PF05221 S-adenosyl-L-homocysteine hydrolase BB0198 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BB0199 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV BB0200 PF02219 Methylenetetrahydrofolate reductase BB0201 PF03466 LysR substrate binding domain BB0201 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB0202 PF00850 Histone deacetylase domain BB0203 PF00083 Sugar (and other) transporter BB0203 PF07690 Major Facilitator Superfamily BB0206 PF14718 Soluble lytic murein transglycosylase L domain BB0206 PF01464 Transglycosylase SLT domain BB0207 PF01743 Poly A polymerase head domain BB0207 PF12627 Probable RNA and SrmB- binding site of polymerase A BB0209 PF00271 Helicase conserved C-terminal domain BB0209 PF00270 DEAD/DEAH box helicase BB0210 PF03167 Uracil DNA glycosylase superfamily BB0211 PF13419 Haloacid dehalogenase-like hydrolase BB0212 PF01048 Phosphorylase superfamily BB0215 PF01475 Ferric uptake regulator family BB0217 PF06965 Na+/H+ antiporter 1 BB0219 PF13439 Glycosyltransferase Family 4 BB0222 PF03976 Polyphosphate kinase 2 (PPK2) BB0223 PF00753 Metallo-beta-lactamase superfamily BB0225 PF04143 Sulphur transport BB0227 PF00501 AMP-binding enzyme BB0227 PF14535 AMP-binding enzyme C-terminal domain BB0228 PF00005 ABC transporter BB0231 PF02653 Branched-chain amino acid transport system / permease component BB0232 PF12399 Branched-chain amino acid ATP-binding cassette transporter BB0232 PF00005 ABC transporter BB0233 PF00501 AMP-binding enzyme BB0236 PF03466 LysR substrate binding domain BB0236 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB0238 PF03401 Tripartite tricarboxylate transporter family receptor BB0239 PF01168 Alanine racemase, N-terminal domain BB0240 PF00155 Aminotransferase class I and II BB0241 PF00497 Bacterial extracellular solute-binding proteins, family 3 BB0243 PF00682 HMGL-like BB0244 PF02481 DNA recombination-mediator protein A BB0244 PF17782 DprA winged helix domain BB0245 PF01037 Lrp/AsnC ligand binding domain BB0246 PF00266 Aminotransferase class-V BB0247 PF01327 Polypeptide deformylase BB0248 PF02911 Formyl transferase, C-terminal domain BB0248 PF00551 Formyl transferase BB0250 PF13419 Haloacid dehalogenase-like hydrolase BB0252 PF03641 Possible lysine decarboxylase BB0254 PF18693 TRAM domain BB0254 PF04055 Radical SAM superfamily BB0254 PF00919 Uncharacterized protein family UPF0004 BB0255 PF01361 Tautomerase enzyme BB0256 PF01266 FAD dependent oxidoreductase BB0257 PF03401 Tripartite tricarboxylate transporter family receptor BB0258 PF07729 FCD domain BB0258 PF00392 Bacterial regulatory proteins, gntR family BB0260 PF01958 Domain of unknown function DUF108 BB0260 PF03447 Homoserine dehydrogenase, NAD binding domain BB0262 PF01189 16S rRNA methyltransferase RsmB/F BB0262 PF01029 NusB family BB0264 PF00672 HAMP domain BB0264 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BB0264 PF00512 His Kinase A (phospho-acceptor) domain BB0264 PF00989 PAS fold BB0265 PF00072 Response regulator receiver domain BB0265 PF02954 Bacterial regulatory protein, Fis family BB0265 PF00158 Sigma-54 interaction domain BB0266 PF02080 TrkA-C domain BB0266 PF02254 TrkA-N domain BB0267 PF02386 Cation transport protein BB0268 PF01047 MarR family BB0270 PF12804 MobA-like NTP transferase domain BB0272 PF17645 Arylmalonate decarboxylase BB0273 PF00561 alpha/beta hydrolase fold BB0275 PF00857 Isochorismatase family BB0277 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BB0277 PF00355 Rieske [2Fe-2S] domain BB0278 PF07992 Pyridine nucleotide-disulphide oxidoreductase BB0278 PF14759 Reductase C-terminal BB0279 PF00355 Rieske [2Fe-2S] domain BB0280 PF03480 Bacterial extracellular solute-binding protein, family 7 BB0281 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BB0281 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BB0282 PF00941 FAD binding domain in molybdopterin dehydrogenase BB0282 PF03450 CO dehydrogenase flavoprotein C-terminal domain BB0283 PF01799 [2Fe-2S] binding domain BB0283 PF00111 2Fe-2S iron-sulfur cluster binding domain BB0285 PF00005 ABC transporter BB0286 PF00528 Binding-protein-dependent transport system inner membrane component BB0288 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BB0289 PF04107 Glutamate-cysteine ligase family 2(GCS2) BB0290 PF08241 Methyltransferase domain BB0292 PF00588 SpoU rRNA Methylase family BB0293 PF03401 Tripartite tricarboxylate transporter family receptor BB0294 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus BB0294 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus BB0295 PF02556 Preprotein translocase subunit SecB BB0296 PF00462 Glutaredoxin BB0298 PF00300 Histidine phosphatase superfamily (branch 1) BB0299 PF01551 Peptidase family M23 BB0300 PF13180 PDZ domain BB0300 PF03572 Peptidase family S41 BB0301 PF00899 ThiF family BB0303 PF01565 FAD binding domain BB0303 PF02913 FAD linked oxidases, C-terminal domain BB0304 PF13667 ThiC-associated domain BB0304 PF01964 Radical SAM ThiC family BB0305 PF07549 SecD/SecF GG Motif BB0305 PF02355 Protein export membrane protein BB0306 PF09518 HindIII restriction endonuclease BB0311 PF00696 Amino acid kinase family BB0311 PF01472 PUA domain BB0312 PF01018 GTP1/OBG BB0312 PF01926 50S ribosome-binding GTPase BB0313 PF01016 Ribosomal L27 protein BB0314 PF00829 Ribosomal prokaryotic L21 protein BB0316 PF00348 Polyprenyl synthetase BB0317 PF03466 LysR substrate binding domain BB0317 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB0318 PF01968 Hydantoinase/oxoprolinase BB0318 PF05378 Hydantoinase/oxoprolinase N-terminal region BB0319 PF02538 Hydantoinase B/oxoprolinase BB0320 PF01266 FAD dependent oxidoreductase BB0321 PF03401 Tripartite tricarboxylate transporter family receptor BB0322 PF00171 Aldehyde dehydrogenase family BB0323 PF02794 RTX toxin acyltransferase family BB0324 PF03497 Anthrax toxin LF subunit BB0324 PF02382 N-terminal domain in RTX protein BB0324 PF06594 Haemolysin-type calcium binding protein related domain BB0324 PF00353 RTX calcium-binding nonapeptide repeat (4 copies) BB0325 PF03412 Peptidase C39 family BB0325 PF00005 ABC transporter BB0325 PF00664 ABC transporter transmembrane region BB0326 PF13533 Biotin-lipoyl like BB0327 PF02321 Outer membrane efflux protein BB0329 PF00497 Bacterial extracellular solute-binding proteins, family 3 BB0330 PF00528 Binding-protein-dependent transport system inner membrane component BB0331 PF00528 Binding-protein-dependent transport system inner membrane component BB0332 PF00005 ABC transporter BB0333 PF01063 Amino-transferase class IV BB0337 PF00205 Thiamine pyrophosphate enzyme, central domain BB0337 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BB0337 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BB0338 PF07729 FCD domain BB0338 PF00392 Bacterial regulatory proteins, gntR family BB0341 PF00392 Bacterial regulatory proteins, gntR family BB0341 PF07729 FCD domain BB0342 PF08240 Alcohol dehydrogenase GroES-like domain BB0342 PF00107 Zinc-binding dehydrogenase BB0343 PF13193 AMP-binding enzyme C-terminal domain BB0343 PF00501 AMP-binding enzyme BB0345 PF00528 Binding-protein-dependent transport system inner membrane component BB0346 PF00005 ABC transporter BB0347 PF09084 NMT1/THI5 like BB0349 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BB0349 PF00205 Thiamine pyrophosphate enzyme, central domain BB0349 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BB0351 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB0351 PF03466 LysR substrate binding domain BB0352 PF02515 CoA-transferase family III BB0353 PF03328 HpcH/HpaI aldolase/citrate lyase family BB0354 PF07702 UTRA domain BB0354 PF00392 Bacterial regulatory proteins, gntR family BB0357 PF03401 Tripartite tricarboxylate transporter family receptor BB0358 PF03401 Tripartite tricarboxylate transporter family receptor BB0361 PF01144 Coenzyme A transferase BB0362 PF01144 Coenzyme A transferase BB0363 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB0363 PF03466 LysR substrate binding domain BB0364 PF00378 Enoyl-CoA hydratase/isomerase BB0365 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BB0365 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BB0367 PF02653 Branched-chain amino acid transport system / permease component BB0369 PF00005 ABC transporter BB0369 PF12399 Branched-chain amino acid ATP-binding cassette transporter BB0370 PF00005 ABC transporter BB0374 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BB0377 PF01970 Tripartite tricarboxylate transporter TctA family BB0378 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BB0378 PF00512 His Kinase A (phospho-acceptor) domain BB0378 PF00072 Response regulator receiver domain BB0378 PF08448 PAS fold BB0378 PF13426 PAS domain BB0379 PF00486 Transcriptional regulatory protein, C terminal BB0379 PF00072 Response regulator receiver domain BB0383 PF01488 Shikimate / quinate 5-dehydrogenase BB0383 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain BB0383 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain BB0384 PF03462 PCRF domain BB0384 PF00472 RF-1 domain BB0385 PF05175 Methyltransferase small domain BB0385 PF17827 PrmC N-terminal domain BB0386 PF00462 Glutaredoxin BB0387 PF02441 Flavoprotein BB0388 PF03401 Tripartite tricarboxylate transporter family receptor BB0389 PF09084 NMT1/THI5 like BB0390 PF00941 FAD binding domain in molybdopterin dehydrogenase BB0390 PF03450 CO dehydrogenase flavoprotein C-terminal domain BB0391 PF00111 2Fe-2S iron-sulfur cluster binding domain BB0391 PF01799 [2Fe-2S] binding domain BB0392 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BB0392 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BB0395 PF03180 NLPA lipoprotein BB0397 PF01077 Nitrite and sulphite reductase 4Fe-4S domain BB0397 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain BB0399 PF00005 ABC transporter BB0400 PF00005 ABC transporter BB0400 PF12399 Branched-chain amino acid ATP-binding cassette transporter BB0401 PF02653 Branched-chain amino acid transport system / permease component BB0402 PF02653 Branched-chain amino acid transport system / permease component BB0403 PF03466 LysR substrate binding domain BB0403 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB0404 PF13458 Periplasmic binding protein BB0405 PF01425 Amidase BB0406 PF00484 Carbonic anhydrase BB0410 PF12146 Serine aminopeptidase, S33 BB0412 PF02426 Muconolactone delta-isomerase BB0413 PF01144 Coenzyme A transferase BB0414 PF01144 Coenzyme A transferase BB0415 PF01614 Bacterial transcriptional regulator BB0415 PF09339 IclR helix-turn-helix domain BB0417 PF02667 Short chain fatty acid transporter BB0418 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BB0418 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BB0419 PF00082 Subtilase family BB0419 PF03797 Autotransporter beta-domain BB0420 PF00311 Phosphoenolpyruvate carboxylase BB0421 PF06508 Queuosine biosynthesis protein QueC BB0424 PF04299 Putative FMN-binding domain BB0425 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BB0426 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BB0427 PF07859 alpha/beta hydrolase fold BB0429 PF08502 LeuA allosteric (dimerisation) domain BB0429 PF00682 HMGL-like BB0430 PF12833 Helix-turn-helix domain BB0431 PF00920 Dehydratase family BB0432 PF09290 Prokaryotic acetaldehyde dehydrogenase, dimerisation BB0432 PF01118 Semialdehyde dehydrogenase, NAD binding domain BB0433 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) BB0435 PF02321 Outer membrane efflux protein BB0436 PF00873 AcrB/AcrD/AcrF family BB0437 PF13533 Biotin-lipoyl like BB0438 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB0438 PF03466 LysR substrate binding domain BB0439 PF01594 AI-2E family transporter BB0441 PF02254 TrkA-N domain BB0441 PF07885 Ion channel BB0442 PF01042 Endoribonuclease L-PSP BB0444 PF01145 SPFH domain / Band 7 family BB0445 PF07411 Domain of unknown function (DUF1508) BB0446 PF14031 Putative serine dehydratase domain BB0446 PF01168 Alanine racemase, N-terminal domain BB0448 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB0448 PF03466 LysR substrate binding domain BB0450 PF03797 Autotransporter beta-domain BB0450 PF12951 Passenger-associated-transport-repeat BB0450 PF00082 Subtilase family BB0452 PF12951 Passenger-associated-transport-repeat BB0452 PF12951 Passenger-associated-transport-repeat BB0454 PF03401 Tripartite tricarboxylate transporter family receptor BB0455 PF00501 AMP-binding enzyme BB0455 PF13193 AMP-binding enzyme C-terminal domain BB0456 PF01614 Bacterial transcriptional regulator BB0456 PF09339 IclR helix-turn-helix domain BB0457 PF00378 Enoyl-CoA hydratase/isomerase BB0458 PF02627 Carboxymuconolactone decarboxylase family BB0459 PF03401 Tripartite tricarboxylate transporter family receptor BB0460 PF08240 Alcohol dehydrogenase GroES-like domain BB0460 PF00107 Zinc-binding dehydrogenase BB0461 PF02515 CoA-transferase family III BB0462 PF03466 LysR substrate binding domain BB0462 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB0464 PF02515 CoA-transferase family III BB0465 PF03401 Tripartite tricarboxylate transporter family receptor BB0466 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB0466 PF03466 LysR substrate binding domain BB0467 PF01042 Endoribonuclease L-PSP BB0468 PF00970 Oxidoreductase FAD-binding domain BB0468 PF00042 Globin BB0468 PF00175 Oxidoreductase NAD-binding domain BB0469 PF02667 Short chain fatty acid transporter BB0470 PF00392 Bacterial regulatory proteins, gntR family BB0470 PF07729 FCD domain BB0472 PF00313 'Cold-shock' DNA-binding domain BB0473 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB0473 PF03466 LysR substrate binding domain BB0474 PF03401 Tripartite tricarboxylate transporter family receptor BB0475 PF00884 Sulfatase BB0475 PF12411 Choline sulfatase enzyme C terminal BB0476 PF03401 Tripartite tricarboxylate transporter family receptor BB0477 PF03401 Tripartite tricarboxylate transporter family receptor BB0478 PF01979 Amidohydrolase family BB0479 PF02492 CobW/HypB/UreG, nucleotide-binding domain BB0479 PF07683 Cobalamin synthesis protein cobW C-terminal domain BB0480 PF03033 Glycosyltransferase family 28 N-terminal domain BB0481 PF16925 Tetracyclin repressor-like, C-terminal domain BB0481 PF00440 Bacterial regulatory proteins, tetR family BB0488 PF04610 TrbL/VirB6 plasmid conjugal transfer protein BB0491 PF07996 Type IV secretion system proteins BB0496 PF00149 Calcineurin-like phosphoesterase BB0501 PF00183 Hsp90 protein BB0501 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BB0502 PF00043 Glutathione S-transferase, C-terminal domain BB0502 PF13417 Glutathione S-transferase, N-terminal domain BB0503 PF01510 N-acetylmuramoyl-L-alanine amidase BB0505 PF01578 Cytochrome C assembly protein BB0506 PF02881 SRP54-type protein, helical bundle domain BB0506 PF02978 Signal peptide binding domain BB0506 PF00448 SRP54-type protein, GTPase domain BB0507 PF04972 BON domain BB0507 PF01476 LysM domain BB0508 PF05690 Thiazole biosynthesis protein ThiG BB0508 PF02597 ThiS family BB0509 PF00561 alpha/beta hydrolase fold BB0510 PF02390 Putative methyltransferase BB0512 PF02515 CoA-transferase family III BB0514 PF03401 Tripartite tricarboxylate transporter family receptor BB0517 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BB0517 PF00355 Rieske [2Fe-2S] domain BB0519 PF03480 Bacterial extracellular solute-binding protein, family 7 BB0521 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BB0522 PF00175 Oxidoreductase NAD-binding domain BB0522 PF00970 Oxidoreductase FAD-binding domain BB0522 PF00111 2Fe-2S iron-sulfur cluster binding domain BB0523 PF00355 Rieske [2Fe-2S] domain BB0525 PF03401 Tripartite tricarboxylate transporter family receptor BB0530 PF03466 LysR substrate binding domain BB0530 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB0531 PF03401 Tripartite tricarboxylate transporter family receptor BB0532 PF00549 CoA-ligase BB0532 PF02629 CoA binding domain BB0533 PF00378 Enoyl-CoA hydratase/isomerase BB0534 PF03401 Tripartite tricarboxylate transporter family receptor BB0536 PF03401 Tripartite tricarboxylate transporter family receptor BB0538 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB0538 PF03466 LysR substrate binding domain BB0539 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BB0539 PF00205 Thiamine pyrophosphate enzyme, central domain BB0539 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BB0540 PF02515 CoA-transferase family III BB0541 PF00378 Enoyl-CoA hydratase/isomerase BB0541 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BB0541 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BB0542 PF03401 Tripartite tricarboxylate transporter family receptor BB0543 PF09339 IclR helix-turn-helix domain BB0543 PF01614 Bacterial transcriptional regulator BB0544 PF03401 Tripartite tricarboxylate transporter family receptor BB0547 PF13193 AMP-binding enzyme C-terminal domain BB0547 PF00501 AMP-binding enzyme BB0548 PF00356 Bacterial regulatory proteins, lacI family BB0552 PF00107 Zinc-binding dehydrogenase BB0552 PF08240 Alcohol dehydrogenase GroES-like domain BB0554 PF02627 Carboxymuconolactone decarboxylase family BB0555 PF00378 Enoyl-CoA hydratase/isomerase BB0556 PF00465 Iron-containing alcohol dehydrogenase BB0557 PF02515 CoA-transferase family III BB0558 PF02515 CoA-transferase family III BB0559 PF03401 Tripartite tricarboxylate transporter family receptor BB0560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB0560 PF03466 LysR substrate binding domain BB0562 PF03401 Tripartite tricarboxylate transporter family receptor BB0563 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BB0563 PF02770 Acyl-CoA dehydrogenase, middle domain BB0563 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BB0564 PF03401 Tripartite tricarboxylate transporter family receptor BB0566 PF00330 Aconitase family (aconitate hydratase) BB0567 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB0567 PF03466 LysR substrate binding domain BB0568 PF00890 FAD binding domain BB0568 PF04205 FMN-binding domain BB0571 PF00005 ABC transporter BB0572 PF12399 Branched-chain amino acid ATP-binding cassette transporter BB0572 PF00005 ABC transporter BB0575 PF13458 Periplasmic binding protein BB0576 PF00440 Bacterial regulatory proteins, tetR family BB0576 PF17938 Tetracyclin repressor-like, C-terminal domain BB0579 PF17645 Arylmalonate decarboxylase BB0581 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BB0581 PF02770 Acyl-CoA dehydrogenase, middle domain BB0581 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BB0583 PF00501 AMP-binding enzyme BB0583 PF13193 AMP-binding enzyme C-terminal domain BB0585 PF00378 Enoyl-CoA hydratase/isomerase BB0586 PF03401 Tripartite tricarboxylate transporter family receptor BB0587 PF13577 SnoaL-like domain BB0590 PF01575 MaoC like domain BB0591 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BB0591 PF02770 Acyl-CoA dehydrogenase, middle domain BB0591 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BB0592 PF02515 CoA-transferase family III BB0593 PF02515 CoA-transferase family III BB0594 PF03401 Tripartite tricarboxylate transporter family receptor BB0597 PF00378 Enoyl-CoA hydratase/isomerase BB0599 PF02653 Branched-chain amino acid transport system / permease component BB0601 PF00005 ABC transporter BB0601 PF12399 Branched-chain amino acid ATP-binding cassette transporter BB0602 PF00005 ABC transporter BB0603 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BB0603 PF07992 Pyridine nucleotide-disulphide oxidoreductase BB0605 PF03401 Tripartite tricarboxylate transporter family receptor BB0606 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain BB0606 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain BB0607 PF13193 AMP-binding enzyme C-terminal domain BB0607 PF00501 AMP-binding enzyme BB0608 PF09339 IclR helix-turn-helix domain BB0609 PF09339 IclR helix-turn-helix domain BB0610 PF00682 HMGL-like BB0610 PF02436 Conserved carboxylase domain BB0610 PF02785 Biotin carboxylase C-terminal domain BB0610 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BB0610 PF00364 Biotin-requiring enzyme BB0610 PF00289 Biotin carboxylase, N-terminal domain BB0611 PF02770 Acyl-CoA dehydrogenase, middle domain BB0611 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BB0611 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BB0614 PF00108 Thiolase, N-terminal domain BB0614 PF02803 Thiolase, C-terminal domain BB0615 PF16177 Acetyl-coenzyme A synthetase N-terminus BB0615 PF00501 AMP-binding enzyme BB0615 PF13193 AMP-binding enzyme C-terminal domain BB0617 PF02515 CoA-transferase family III BB0618 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB0618 PF03466 LysR substrate binding domain BB0619 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BB0619 PF02770 Acyl-CoA dehydrogenase, middle domain BB0619 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BB0620 PF01012 Electron transfer flavoprotein domain BB0621 PF01012 Electron transfer flavoprotein domain BB0621 PF00766 Electron transfer flavoprotein FAD-binding domain BB0623 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB0623 PF03466 LysR substrate binding domain BB0625 PF03401 Tripartite tricarboxylate transporter family receptor BB0626 PF03401 Tripartite tricarboxylate transporter family receptor BB0627 PF17932 Tetracyclin repressor-like, C-terminal domain BB0627 PF00440 Bacterial regulatory proteins, tetR family BB0629 PF00378 Enoyl-CoA hydratase/isomerase BB0632 PF00682 HMGL-like BB0633 PF00378 Enoyl-CoA hydratase/isomerase BB0634 PF02515 CoA-transferase family III BB0635 PF03401 Tripartite tricarboxylate transporter family receptor BB0636 PF00465 Iron-containing alcohol dehydrogenase BB0637 PF00378 Enoyl-CoA hydratase/isomerase BB0638 PF01425 Amidase BB0641 PF00171 Aldehyde dehydrogenase family BB0642 PF03358 NADPH-dependent FMN reductase BB0643 PF00528 Binding-protein-dependent transport system inner membrane component BB0644 PF00005 ABC transporter BB0647 PF09339 IclR helix-turn-helix domain BB0647 PF01614 Bacterial transcriptional regulator BB0648 PF00027 Cyclic nucleotide-binding domain BB0648 PF13545 Crp-like helix-turn-helix domain BB0650 PF03401 Tripartite tricarboxylate transporter family receptor BB0651 PF00171 Aldehyde dehydrogenase family BB0652 PF03401 Tripartite tricarboxylate transporter family receptor BB0653 PF02627 Carboxymuconolactone decarboxylase family BB0655 PF01614 Bacterial transcriptional regulator BB0655 PF09339 IclR helix-turn-helix domain BB0656 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BB0656 PF02770 Acyl-CoA dehydrogenase, middle domain BB0656 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BB0657 PF00501 AMP-binding enzyme BB0657 PF13193 AMP-binding enzyme C-terminal domain BB0660 PF03401 Tripartite tricarboxylate transporter family receptor BB0661 PF00378 Enoyl-CoA hydratase/isomerase BB0663 PF02770 Acyl-CoA dehydrogenase, middle domain BB0663 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BB0663 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BB0664 PF00378 Enoyl-CoA hydratase/isomerase BB0665 PF02803 Thiolase, C-terminal domain BB0665 PF00108 Thiolase, N-terminal domain BB0666 PF03401 Tripartite tricarboxylate transporter family receptor BB0669 PF03466 LysR substrate binding domain BB0669 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB0670 PF00561 alpha/beta hydrolase fold BB0673 PF02798 Glutathione S-transferase, N-terminal domain BB0673 PF00043 Glutathione S-transferase, C-terminal domain BB0674 PF03401 Tripartite tricarboxylate transporter family receptor BB0675 PF03401 Tripartite tricarboxylate transporter family receptor BB0676 PF07729 FCD domain BB0676 PF00392 Bacterial regulatory proteins, gntR family BB0677 PF00171 Aldehyde dehydrogenase family BB0678 PF01053 Cys/Met metabolism PLP-dependent enzyme BB0682 PF07683 Cobalamin synthesis protein cobW C-terminal domain BB0682 PF02492 CobW/HypB/UreG, nucleotide-binding domain BB0686 PF00701 Dihydrodipicolinate synthetase family BB0690 PF00005 ABC transporter BB0691 PF01546 Peptidase family M20/M25/M40 BB0691 PF07687 Peptidase dimerisation domain BB0692 PF09339 IclR helix-turn-helix domain BB0692 PF01614 Bacterial transcriptional regulator BB0693 PF07687 Peptidase dimerisation domain BB0693 PF01546 Peptidase family M20/M25/M40 BB0694 PF01425 Amidase BB0696 PF04115 Ureidoglycolate lyase BB0697 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BB0700 PF03466 LysR substrate binding domain BB0700 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB0706 PF03480 Bacterial extracellular solute-binding protein, family 7 BB0707 PF00392 Bacterial regulatory proteins, gntR family BB0707 PF00155 Aminotransferase class I and II BB0708 PF00464 Serine hydroxymethyltransferase BB0709 PF03594 Benzoate membrane transport protein BB0710 PF00111 2Fe-2S iron-sulfur cluster binding domain BB0710 PF01799 [2Fe-2S] binding domain BB0711 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BB0712 PF03466 LysR substrate binding domain BB0712 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB0714 PF00682 HMGL-like BB0715 PF02515 CoA-transferase family III BB0716 PF00857 Isochorismatase family BB0717 PF03401 Tripartite tricarboxylate transporter family receptor BB0719 PF03480 Bacterial extracellular solute-binding protein, family 7 BB0721 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BB0726 PF03401 Tripartite tricarboxylate transporter family receptor BB0727 PF00175 Oxidoreductase NAD-binding domain BB0727 PF00970 Oxidoreductase FAD-binding domain BB0727 PF00111 2Fe-2S iron-sulfur cluster binding domain BB0728 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BB0728 PF00355 Rieske [2Fe-2S] domain BB0732 PF01494 FAD binding domain BB0733 PF03401 Tripartite tricarboxylate transporter family receptor BB0734 PF01557 Fumarylacetoacetate (FAA) hydrolase family BB0735 PF01557 Fumarylacetoacetate (FAA) hydrolase family BB0736 PF00171 Aldehyde dehydrogenase family BB0737 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BB0739 PF01557 Fumarylacetoacetate (FAA) hydrolase family BB0740 PF03328 HpcH/HpaI aldolase/citrate lyase family BB0742 PF03401 Tripartite tricarboxylate transporter family receptor BB0743 PF00205 Thiamine pyrophosphate enzyme, central domain BB0743 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BB0743 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BB0744 PF00171 Aldehyde dehydrogenase family BB0745 PF07859 alpha/beta hydrolase fold BB0747 PF03401 Tripartite tricarboxylate transporter family receptor BB0750 PF00378 Enoyl-CoA hydratase/isomerase BB0752 PF02515 CoA-transferase family III BB0753 PF14535 AMP-binding enzyme C-terminal domain BB0753 PF00501 AMP-binding enzyme BB0754 PF08361 MAATS-type transcriptional repressor, C-terminal region BB0754 PF00440 Bacterial regulatory proteins, tetR family BB0755 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BB0755 PF02770 Acyl-CoA dehydrogenase, middle domain BB0755 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BB0757 PF02653 Branched-chain amino acid transport system / permease component BB0758 PF00005 ABC transporter BB0759 PF12399 Branched-chain amino acid ATP-binding cassette transporter BB0759 PF00005 ABC transporter BB0762 PF00106 short chain dehydrogenase BB0763 PF00378 Enoyl-CoA hydratase/isomerase BB0765 PF00108 Thiolase, N-terminal domain BB0765 PF02803 Thiolase, C-terminal domain BB0768 PF03401 Tripartite tricarboxylate transporter family receptor BB0770 PF09339 IclR helix-turn-helix domain BB0770 PF01614 Bacterial transcriptional regulator BB0771 PF01266 FAD dependent oxidoreductase BB0772 PF01244 Membrane dipeptidase (Peptidase family M19) BB0773 PF03401 Tripartite tricarboxylate transporter family receptor BB0780 PF00482 Type II secretion system (T2SS), protein F BB0781 PF00437 Type II/IV secretion system protein BB0782 PF01471 Putative peptidoglycan binding domain BB0782 PF13401 AAA domain BB0784 PF03958 Bacterial type II/III secretion system short domain BB0784 PF00263 Bacterial type II and III secretion system protein BB0791 PF00437 Type II/IV secretion system protein BB0792 PF01478 Type IV leader peptidase family BB0792 PF06750 Bacterial Peptidase A24 N-terminal domain BB0793 PF04717 Type VI secretion system, phage-baseplate injector BB0797 PF14410 HNH/ENDO VII superfamily nuclease with conserved GHE residues BB0797 PF04740 LXG domain of WXG superfamily BB0797 PF14449 Pre-toxin TG BB0798 PF05076 Suppressor of fused protein (SUFU) BB0810 PF10431 C-terminal, D2-small domain, of ClpB protein BB0810 PF17871 AAA lid domain BB0810 PF00004 ATPase family associated with various cellular activities (AAA) BB0810 PF07724 AAA domain (Cdc48 subfamily) BB0815 PF13677 Membrane MotB of proton-channel complex MotA/MotB BB0815 PF00691 OmpA family BB0819 PF01699 Sodium/calcium exchanger protein BB0821 PF16168 Adhesin of bacterial autotransporter system, probable stalk BB0821 PF03797 Autotransporter beta-domain BB0821 PF13018 Extended Signal Peptide of Type V secretion system BB0822 PF13091 PLD-like domain BB0823 PF03459 TOBE domain BB0823 PF00005 ABC transporter BB0824 PF00528 Binding-protein-dependent transport system inner membrane component BB0826 PF00561 alpha/beta hydrolase fold BB0832 PF00593 TonB dependent receptor BB0832 PF07715 TonB-dependent Receptor Plug Domain BB0834 PF00202 Aminotransferase class-III BB0835 PF00491 Arginase family BB0840 PF01588 Putative tRNA binding domain BB0840 PF09334 tRNA synthetases class I (M) BB0842 PF10609 NUBPL iron-transfer P-loop NTPase BB0845 PF00692 dUTPase BB0850 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain BB0850 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain BB0850 PF01276 Orn/Lys/Arg decarboxylase, major domain BB0852 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BB0852 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BB0853 PF02535 ZIP Zinc transporter BB0854 PF01571 Aminomethyltransferase folate-binding domain BB0854 PF08669 Glycine cleavage T-protein C-terminal barrel domain BB0855 PF01597 Glycine cleavage H-protein BB0856 PF02347 Glycine cleavage system P-protein BB0857 PF00392 Bacterial regulatory proteins, gntR family BB0857 PF07729 FCD domain BB0858 PF02515 CoA-transferase family III BB0860 PF00378 Enoyl-CoA hydratase/isomerase BB0863 PF07171 MlrC C-terminus BB0863 PF07364 Metallopeptidase family M81 BB0864 PF00005 ABC transporter BB0864 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BB0865 PF00528 Binding-protein-dependent transport system inner membrane component BB0866 PF00528 Binding-protein-dependent transport system inner membrane component BB0867 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BB0868 PF00171 Aldehyde dehydrogenase family BB0869 PF00202 Aminotransferase class-III BB0870 PF00392 Bacterial regulatory proteins, gntR family BB0870 PF00155 Aminotransferase class I and II BB0871 PF00186 Dihydrofolate reductase BB0872 PF00303 Thymidylate synthase BB0874 PF03232 Ubiquinone biosynthesis protein COQ7 BB0875 PF00953 Glycosyl transferase family 4 BB0876 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BB0876 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BB0876 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BB0877 PF01370 NAD dependent epimerase/dehydratase family BB0878 PF03023 Lipid II flippase MurJ BB0879 PF00534 Glycosyl transferases group 1 BB0879 PF13439 Glycosyltransferase Family 4 BB0880 PF00733 Asparagine synthase BB0880 PF13537 Glutamine amidotransferase domain BB0881 PF00534 Glycosyl transferases group 1 BB0881 PF13439 Glycosyltransferase Family 4 BB0882 PF13439 Glycosyltransferase Family 4 BB0882 PF00534 Glycosyl transferases group 1 BB0883 PF00534 Glycosyl transferases group 1 BB0883 PF13477 Glycosyl transferase 4-like BB0884 PF00342 Phosphoglucose isomerase BB0885 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BB0885 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BB0885 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BB0885 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BB0887 PF02913 FAD linked oxidases, C-terminal domain BB0887 PF01565 FAD binding domain BB0888 PF00486 Transcriptional regulatory protein, C terminal BB0888 PF00072 Response regulator receiver domain BB0889 PF08521 Two-component sensor kinase N-terminal BB0889 PF00512 His Kinase A (phospho-acceptor) domain BB0889 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BB0890 PF00884 Sulfatase BB0892 PF04209 homogentisate 1,2-dioxygenase BB0893 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB0893 PF03466 LysR substrate binding domain BB0895 PF01494 FAD binding domain BB0897 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain BB0897 PF06827 Zinc finger found in FPG and IleRS BB0897 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain BB0899 PF03550 Outer membrane lipoprotein LolB BB0900 PF00288 GHMP kinases N terminal domain BB0900 PF08544 GHMP kinases C terminal BB0901 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase BB0901 PF14572 Phosphoribosyl synthetase-associated domain BB0902 PF01386 Ribosomal L25p family BB0902 PF14693 Ribosomal protein TL5, C-terminal domain BB0903 PF01195 Peptidyl-tRNA hydrolase BB0905 PF01926 50S ribosome-binding GTPase BB0905 PF06071 Protein of unknown function (DUF933) BB0906 PF13356 Arm DNA-binding domain BB0906 PF00589 Phage integrase family BB0910 PF00004 ATPase family associated with various cellular activities (AAA) BB0911 PF00082 Subtilase family BB0912 PF18273 Type III R-M EcoP15I C-terminal domain BB0912 PF01555 DNA methylase BB0913 PF04851 Type III restriction enzyme, res subunit BB0913 PF08774 VRR-NUC domain BB0916 PF12951 Passenger-associated-transport-repeat BB0917 PF00486 Transcriptional regulatory protein, C terminal BB0917 PF00072 Response regulator receiver domain BB0918 PF03401 Tripartite tricarboxylate transporter family receptor BB0919 PF00440 Bacterial regulatory proteins, tetR family BB0919 PF17938 Tetracyclin repressor-like, C-terminal domain BB0921 PF07690 Major Facilitator Superfamily BB0922 PF07729 FCD domain BB0922 PF00392 Bacterial regulatory proteins, gntR family BB0923 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BB0923 PF00205 Thiamine pyrophosphate enzyme, central domain BB0923 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BB0924 PF03401 Tripartite tricarboxylate transporter family receptor BB0925 PF02668 Taurine catabolism dioxygenase TauD, TfdA family BB0926 PF01515 Phosphate acetyl/butaryl transferase BB0926 PF03949 Malic enzyme, NAD binding domain BB0926 PF00390 Malic enzyme, N-terminal domain BB0928 PF00528 Binding-protein-dependent transport system inner membrane component BB0929 PF00528 Binding-protein-dependent transport system inner membrane component BB0930 PF00005 ABC transporter BB0930 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BB0931 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BB0933 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB0933 PF03466 LysR substrate binding domain BB0936 PF01022 Bacterial regulatory protein, arsR family BB0939 PF03594 Benzoate membrane transport protein BB0940 PF00037 4Fe-4S binding domain BB0941 PF01467 Cytidylyltransferase-like BB0943 PF02881 SRP54-type protein, helical bundle domain BB0943 PF00448 SRP54-type protein, GTPase domain BB0945 PF00528 Binding-protein-dependent transport system inner membrane component BB0946 PF00528 Binding-protein-dependent transport system inner membrane component BB0947 PF00005 ABC transporter BB0951 PF00925 GTP cyclohydrolase II BB0951 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BB0952 PF00885 6,7-dimethyl-8-ribityllumazine synthase BB0953 PF01029 NusB family BB0954 PF02769 AIR synthase related protein, C-terminal domain BB0954 PF00586 AIR synthase related protein, N-terminal domain BB0955 PF04608 Phosphatidylglycerophosphatase A BB0956 PF02464 Competence-damaged protein BB0956 PF00994 Probable molybdopterin binding domain BB0956 PF18146 Damage-inducible protein CinA KH domain BB0957 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family BB0958 PF07992 Pyridine nucleotide-disulphide oxidoreductase BB0959 PF01219 Prokaryotic diacylglycerol kinase BB0960 PF03631 Virulence factor BrkB BB0962 PF00118 TCP-1/cpn60 chaperonin family BB0963 PF00166 Chaperonin 10 Kd subunit BB0967 PF00890 FAD binding domain BB0969 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB0969 PF03466 LysR substrate binding domain BB0971 PF03401 Tripartite tricarboxylate transporter family receptor BB0972 PF09339 IclR helix-turn-helix domain BB0972 PF01614 Bacterial transcriptional regulator BB0974 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BB0974 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BB0975 PF00857 Isochorismatase family BB0979 PF00582 Universal stress protein family BB0981 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BB0981 PF02770 Acyl-CoA dehydrogenase, middle domain BB0981 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BB0982 PF02515 CoA-transferase family III BB0983 PF03401 Tripartite tricarboxylate transporter family receptor BB0984 PF03466 LysR substrate binding domain BB0984 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB0986 PF03401 Tripartite tricarboxylate transporter family receptor BB0987 PF01925 Sulfite exporter TauE/SafE BB0988 PF07364 Metallopeptidase family M81 BB0988 PF07171 MlrC C-terminus BB0989 PF03401 Tripartite tricarboxylate transporter family receptor BB0990 PF03466 LysR substrate binding domain BB0990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB0991 PF00990 Diguanylate cyclase, GGDEF domain BB0991 PF00563 EAL domain BB0992 PF04324 BFD-like [2Fe-2S] binding domain BB0992 PF07992 Pyridine nucleotide-disulphide oxidoreductase BB0994 PF01266 FAD dependent oxidoreductase BB0996 PF08402 TOBE domain BB0996 PF00005 ABC transporter BB0998 PF00528 Binding-protein-dependent transport system inner membrane component BB1000 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB1000 PF03466 LysR substrate binding domain BB1001 PF00378 Enoyl-CoA hydratase/isomerase BB1001 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BB1001 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BB1002 PF00501 AMP-binding enzyme BB1002 PF13193 AMP-binding enzyme C-terminal domain BB1004 PF03466 LysR substrate binding domain BB1004 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB1005 PF00005 ABC transporter BB1005 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BB1006 PF00528 Binding-protein-dependent transport system inner membrane component BB1008 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BB1010 PF01663 Type I phosphodiesterase / nucleotide pyrophosphatase BB1011 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB1011 PF03466 LysR substrate binding domain BB1012 PF02423 Ornithine cyclodeaminase/mu-crystallin family BB1013 PF00850 Histone deacetylase domain BB1014 PF00180 Isocitrate/isopropylmalate dehydrogenase BB1015 PF00694 Aconitase C-terminal domain BB1016 PF00330 Aconitase family (aconitate hydratase) BB1018 PF00528 Binding-protein-dependent transport system inner membrane component BB1019 PF00005 ABC transporter BB1020 PF03466 LysR substrate binding domain BB1020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB1024 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB1024 PF03466 LysR substrate binding domain BB1025 PF00884 Sulfatase BB1027 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB1027 PF03466 LysR substrate binding domain BB1028 PF03401 Tripartite tricarboxylate transporter family receptor BB1029 PF00378 Enoyl-CoA hydratase/isomerase BB1030 PF03401 Tripartite tricarboxylate transporter family receptor BB1031 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BB1031 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BB1033 PF03328 HpcH/HpaI aldolase/citrate lyase family BB1034 PF17042 Nucleotide-binding C-terminal domain BB1034 PF07005 Sugar-binding N-terminal domain BB1035 PF02788 Ribulose bisphosphate carboxylase large chain, N-terminal domain BB1035 PF00016 Ribulose bisphosphate carboxylase large chain, catalytic domain BB1036 PF03466 LysR substrate binding domain BB1036 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB1037 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB1037 PF03466 LysR substrate binding domain BB1038 PF00378 Enoyl-CoA hydratase/isomerase BB1039 PF03401 Tripartite tricarboxylate transporter family receptor BB1040 PF02515 CoA-transferase family III BB1043 PF00005 ABC transporter BB1043 PF08402 TOBE domain BB1044 PF00528 Binding-protein-dependent transport system inner membrane component BB1047 PF03401 Tripartite tricarboxylate transporter family receptor BB1048 PF08450 SMP-30/Gluconolactonase/LRE-like region BB1049 PF03328 HpcH/HpaI aldolase/citrate lyase family BB1050 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BB1050 PF01842 ACT domain BB1050 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BB1053 PF02668 Taurine catabolism dioxygenase TauD, TfdA family BB1054 PF03466 LysR substrate binding domain BB1054 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB1055 PF01053 Cys/Met metabolism PLP-dependent enzyme BB1056 PF02627 Carboxymuconolactone decarboxylase family BB1059 PF02515 CoA-transferase family III BB1060 PF03480 Bacterial extracellular solute-binding protein, family 7 BB1062 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BB1064 PF00561 alpha/beta hydrolase fold BB1065 PF16363 GDP-mannose 4,6 dehydratase BB1067 PF03401 Tripartite tricarboxylate transporter family receptor BB1068 PF00171 Aldehyde dehydrogenase family BB1069 PF05199 GMC oxidoreductase BB1069 PF00732 GMC oxidoreductase BB1070 PF00753 Metallo-beta-lactamase superfamily BB1071 PF00528 Binding-protein-dependent transport system inner membrane component BB1072 PF00005 ABC transporter BB1074 PF00392 Bacterial regulatory proteins, gntR family BB1074 PF07729 FCD domain BB1075 PF02627 Carboxymuconolactone decarboxylase family BB1078 PF03401 Tripartite tricarboxylate transporter family receptor BB1080 PF00857 Isochorismatase family BB1081 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB1081 PF03466 LysR substrate binding domain BB1083 PF02515 CoA-transferase family III BB1085 PF03401 Tripartite tricarboxylate transporter family receptor BB1087 PF00378 Enoyl-CoA hydratase/isomerase BB1089 PF00378 Enoyl-CoA hydratase/isomerase BB1090 PF02515 CoA-transferase family III BB1091 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB1091 PF03466 LysR substrate binding domain BB1092 PF03401 Tripartite tricarboxylate transporter family receptor BB1095 PF03401 Tripartite tricarboxylate transporter family receptor BB1096 PF03466 LysR substrate binding domain BB1096 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB1097 PF02515 CoA-transferase family III BB1098 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BB1098 PF18158 Adaptive response protein AidB N-terminal domain BB1098 PF02770 Acyl-CoA dehydrogenase, middle domain BB1099 PF03401 Tripartite tricarboxylate transporter family receptor BB1100 PF00690 Cation transporter/ATPase, N-terminus BB1100 PF00689 Cation transporting ATPase, C-terminus BB1101 PF13426 PAS domain BB1101 PF00512 His Kinase A (phospho-acceptor) domain BB1101 PF00989 PAS fold BB1101 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BB1101 PF08447 PAS fold BB1101 PF13493 Domain of unknown function (DUF4118) BB1102 PF00196 Bacterial regulatory proteins, luxR family BB1102 PF00072 Response regulator receiver domain BB1103 PF03401 Tripartite tricarboxylate transporter family receptor BB1104 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BB1104 PF00355 Rieske [2Fe-2S] domain BB1106 PF00111 2Fe-2S iron-sulfur cluster binding domain BB1107 PF07992 Pyridine nucleotide-disulphide oxidoreductase BB1107 PF14759 Reductase C-terminal BB1108 PF00701 Dihydrodipicolinate synthetase family BB1109 PF01070 FMN-dependent dehydrogenase BB1110 PF01613 Flavin reductase like domain BB1112 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB1112 PF03466 LysR substrate binding domain BB1114 PF03401 Tripartite tricarboxylate transporter family receptor BB1116 PF00795 Carbon-nitrogen hydrolase BB1118 PF03401 Tripartite tricarboxylate transporter family receptor BB1119 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB1119 PF03466 LysR substrate binding domain BB1120 PF00196 Bacterial regulatory proteins, luxR family BB1120 PF00072 Response regulator receiver domain BB1121 PF03401 Tripartite tricarboxylate transporter family receptor BB1122 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BB1122 PF05231 MASE1 BB1122 PF07730 Histidine kinase BB1123 PF00378 Enoyl-CoA hydratase/isomerase BB1124 PF00378 Enoyl-CoA hydratase/isomerase BB1125 PF00501 AMP-binding enzyme BB1125 PF13193 AMP-binding enzyme C-terminal domain BB1126 PF12806 Acetyl-CoA dehydrogenase C-terminal like BB1126 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BB1126 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BB1126 PF02770 Acyl-CoA dehydrogenase, middle domain BB1134 PF05974 Domain of unknown function (DUF892) BB1136 PF01699 Sodium/calcium exchanger protein BB1137 PF03795 YCII-related domain BB1141 PF07729 FCD domain BB1141 PF00392 Bacterial regulatory proteins, gntR family BB1142 PF01425 Amidase BB1143 PF02515 CoA-transferase family III BB1144 PF00378 Enoyl-CoA hydratase/isomerase BB1146 PF00528 Binding-protein-dependent transport system inner membrane component BB1147 PF00005 ABC transporter BB1150 PF09339 IclR helix-turn-helix domain BB1150 PF01614 Bacterial transcriptional regulator BB1151 PF13458 Periplasmic binding protein BB1153 PF00501 AMP-binding enzyme BB1153 PF13193 AMP-binding enzyme C-terminal domain BB1154 PF01042 Endoribonuclease L-PSP BB1155 PF02653 Branched-chain amino acid transport system / permease component BB1157 PF00005 ABC transporter BB1157 PF12399 Branched-chain amino acid ATP-binding cassette transporter BB1158 PF00005 ABC transporter BB1159 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BB1160 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB1160 PF03466 LysR substrate binding domain BB1162 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BB1163 PF07690 Major Facilitator Superfamily BB1164 PF03466 LysR substrate binding domain BB1164 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB1165 PF03401 Tripartite tricarboxylate transporter family receptor BB1166 PF01425 Amidase BB1167 PF00677 Lumazine binding domain BB1168 PF03401 Tripartite tricarboxylate transporter family receptor BB1169 PF01037 Lrp/AsnC ligand binding domain BB1169 PF13404 AsnC-type helix-turn-helix domain BB1171 PF00501 AMP-binding enzyme BB1171 PF13193 AMP-binding enzyme C-terminal domain BB1173 PF00528 Binding-protein-dependent transport system inner membrane component BB1174 PF00005 ABC transporter BB1177 PF08240 Alcohol dehydrogenase GroES-like domain BB1177 PF00107 Zinc-binding dehydrogenase BB1180 PF00403 Heavy-metal-associated domain BB1181 PF01966 HD domain BB1182 PF00155 Aminotransferase class I and II BB1183 PF00857 Isochorismatase family BB1188 PF00529 HlyD membrane-fusion protein of T1SS BB1188 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BB1189 PF03412 Peptidase C39 family BB1189 PF00005 ABC transporter BB1189 PF00664 ABC transporter transmembrane region BB1191 PF02321 Outer membrane efflux protein BB1194 PF02040 Arsenical pump membrane protein BB1195 PF03401 Tripartite tricarboxylate transporter family receptor BB1196 PF02515 CoA-transferase family III BB1198 PF00440 Bacterial regulatory proteins, tetR family BB1198 PF17932 Tetracyclin repressor-like, C-terminal domain BB1199 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BB1199 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BB1199 PF02770 Acyl-CoA dehydrogenase, middle domain BB1201 PF00893 Small Multidrug Resistance protein BB1202 PF00440 Bacterial regulatory proteins, tetR family BB1204 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB1204 PF03466 LysR substrate binding domain BB1208 PF02203 Tar ligand binding domain homologue BB1208 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BB1208 PF00672 HAMP domain BB1209 PF03466 LysR substrate binding domain BB1209 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB1211 PF02627 Carboxymuconolactone decarboxylase family BB1214 PF03401 Tripartite tricarboxylate transporter family receptor BB1215 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BB1215 PF00205 Thiamine pyrophosphate enzyme, central domain BB1215 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BB1216 PF00171 Aldehyde dehydrogenase family BB1217 PF02515 CoA-transferase family III BB1218 PF00378 Enoyl-CoA hydratase/isomerase BB1219 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB1219 PF03466 LysR substrate binding domain BB1220 PF00990 Diguanylate cyclase, GGDEF domain BB1220 PF13185 GAF domain BB1223 PF00583 Acetyltransferase (GNAT) family BB1224 PF13427 Domain of unknown function (DUF4111) BB1224 PF01909 Nucleotidyltransferase domain BB1225 PF01425 Amidase BB1226 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BB1228 PF03480 Bacterial extracellular solute-binding protein, family 7 BB1229 PF01323 DSBA-like thioredoxin domain BB1231 PF01814 Hemerythrin HHE cation binding domain BB1234 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BB1234 PF12833 Helix-turn-helix domain BB1234 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BB1234 PF02805 Metal binding domain of Ada BB1236 PF18029 Glyoxalase-like domain BB1238 PF01654 Cytochrome bd terminal oxidase subunit I BB1239 PF02322 Cytochrome bd terminal oxidase subunit II BB1241 PF00392 Bacterial regulatory proteins, gntR family BB1241 PF00155 Aminotransferase class I and II BB1243 PF00384 Molybdopterin oxidoreductase BB1243 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BB1243 PF01568 Molydopterin dinucleotide binding domain BB1244 PF03916 Polysulphide reductase, NrfD BB1245 PF13247 4Fe-4S dicluster domain BB1247 PF00561 alpha/beta hydrolase fold BB1248 PF00004 ATPase family associated with various cellular activities (AAA) BB1248 PF05362 Lon protease (S16) C-terminal proteolytic domain BB1248 PF02190 ATP-dependent protease La (LON) substrate-binding domain BB1254 PF00962 Adenosine/AMP deaminase BB1255 PF03401 Tripartite tricarboxylate transporter family receptor BB1256 PF03737 Aldolase/RraA BB1257 PF02585 GlcNAc-PI de-N-acetylase BB1259 PF03060 Nitronate monooxygenase BB1260 PF03466 LysR substrate binding domain BB1260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB1262 PF12833 Helix-turn-helix domain BB1262 PF02311 AraC-like ligand binding domain BB1263 PF07969 Amidohydrolase family BB1265 PF03976 Polyphosphate kinase 2 (PPK2) BB1266 PF04102 SlyX BB1267 PF02639 Uncharacterized BCR, YaiI/YqxD family COG1671 BB1268 PF00585 C-terminal regulatory domain of Threonine dehydratase BB1268 PF00291 Pyridoxal-phosphate dependent enzyme BB1271 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BB1271 PF02770 Acyl-CoA dehydrogenase, middle domain BB1271 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BB1273 PF03401 Tripartite tricarboxylate transporter family receptor BB1274 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB1274 PF03466 LysR substrate binding domain BB1275 PF02515 CoA-transferase family III BB1277 PF03466 LysR substrate binding domain BB1277 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB1279 PF05726 Pirin C-terminal cupin domain BB1279 PF02678 Pirin BB1282 PF00072 Response regulator receiver domain BB1283 PF06481 COX Aromatic Rich Motif BB1283 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BB1284 PF00115 Cytochrome C and Quinol oxidase polypeptide I BB1285 PF00510 Cytochrome c oxidase subunit III BB1286 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BB1287 PF01022 Bacterial regulatory protein, arsR family BB1288 PF07690 Major Facilitator Superfamily BB1291 PF05114 Protein of unknown function (DUF692) BB1294 PF07715 TonB-dependent Receptor Plug Domain BB1294 PF00593 TonB dependent receptor BB1297 PF01551 Peptidase family M23 BB1297 PF01476 LysM domain BB1300 PF04461 Protein of unknown function (DUF520) BB1302 PF04542 Sigma-70 region 2 BB1302 PF08281 Sigma-70, region 4 BB1306 PF02104 SURF1 family BB1307 PF03626 Prokaryotic Cytochrome C oxidase subunit IV BB1308 PF00510 Cytochrome c oxidase subunit III BB1309 PF00115 Cytochrome C and Quinol oxidase polypeptide I BB1310 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BB1310 PF06481 COX Aromatic Rich Motif BB1311 PF00083 Sugar (and other) transporter BB1311 PF07690 Major Facilitator Superfamily BB1313 PF00291 Pyridoxal-phosphate dependent enzyme BB1314 PF00892 EamA-like transporter family BB1315 PF00582 Universal stress protein family BB1318 PF05175 Methyltransferase small domain BB1320 PF02634 FdhD/NarQ family BB1321 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BB1321 PF00384 Molybdopterin oxidoreductase BB1321 PF01568 Molydopterin dinucleotide binding domain BB1321 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BB1321 PF12838 4Fe-4S dicluster domain BB1322 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BB1322 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BB1322 PF00037 4Fe-4S binding domain BB1325 PF06463 Molybdenum Cofactor Synthesis C BB1325 PF04055 Radical SAM superfamily BB1326 PF03453 MoeA N-terminal region (domain I and II) BB1326 PF03454 MoeA C-terminal region (domain IV) BB1326 PF00994 Probable molybdopterin binding domain BB1327 PF00994 Probable molybdopterin binding domain BB1328 PF02391 MoaE protein BB1329 PF02597 ThiS family BB1330 PF01967 MoaC family BB1332 PF01738 Dienelactone hydrolase family BB1334 PF08534 Redoxin BB1337 PF06968 Biotin and Thiamin Synthesis associated domain BB1337 PF04055 Radical SAM superfamily BB1342 PF00694 Aconitase C-terminal domain BB1342 PF00330 Aconitase family (aconitate hydratase) BB1343 PF01979 Amidohydrolase family BB1344 PF00857 Isochorismatase family BB1345 PF02492 CobW/HypB/UreG, nucleotide-binding domain BB1345 PF07683 Cobalamin synthesis protein cobW C-terminal domain BB1346 PF03401 Tripartite tricarboxylate transporter family receptor BB1347 PF00890 FAD binding domain BB1347 PF14537 Cytochrome c3 BB1349 PF03401 Tripartite tricarboxylate transporter family receptor BB1351 PF00392 Bacterial regulatory proteins, gntR family BB1351 PF07729 FCD domain BB1352 PF00248 Aldo/keto reductase family BB1353 PF00795 Carbon-nitrogen hydrolase BB1354 PF00571 CBS domain BB1354 PF03471 Transporter associated domain BB1355 PF02130 Uncharacterized protein family UPF0054 BB1356 PF02562 PhoH-like protein BB1357 PF04055 Radical SAM superfamily BB1357 PF01938 TRAM domain BB1357 PF00919 Uncharacterized protein family UPF0004 BB1359 PF07549 SecD/SecF GG Motif BB1359 PF02355 Protein export membrane protein BB1360 PF07549 SecD/SecF GG Motif BB1360 PF13721 SecD export protein N-terminal TM region BB1360 PF02355 Protein export membrane protein BB1361 PF02699 Preprotein translocase subunit BB1362 PF01702 Queuine tRNA-ribosyltransferase BB1363 PF02547 Queuosine biosynthesis protein BB1364 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family BB1366 PF03797 Autotransporter beta-domain BB1366 PF03212 Pertactin BB1367 PF10414 Sirohaem synthase dimerisation region BB1367 PF14824 Sirohaem biosynthesis protein central BB1367 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BB1372 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase BB1373 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain BB1373 PF01464 Transglycosylase SLT domain BB1374 PF00155 Aminotransferase class I and II BB1376 PF00390 Malic enzyme, N-terminal domain BB1376 PF01515 Phosphate acetyl/butaryl transferase BB1376 PF03949 Malic enzyme, NAD binding domain BB1378 PF01337 Barstar (barnase inhibitor) BB1379 PF04452 RNA methyltransferase BB1380 PF02779 Transketolase, pyrimidine binding domain BB1380 PF00456 Transketolase, thiamine diphosphate binding domain BB1380 PF02780 Transketolase, C-terminal domain BB1381 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BB1381 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain BB1382 PF00162 Phosphoglycerate kinase BB1384 PF00871 Acetokinase family BB1385 PF01515 Phosphate acetyl/butaryl transferase BB1386 PF11339 Protein of unknown function (DUF3141) BB1387 PF14834 Glutathione S-transferase, C-terminal domain BB1387 PF02798 Glutathione S-transferase, N-terminal domain BB1391 PF00226 DnaJ domain BB1391 PF01556 DnaJ C terminal domain BB1393 PF03591 AzlC protein BB1395 PF01384 Phosphate transporter family BB1396 PF00994 Probable molybdopterin binding domain BB1398 PF01551 Peptidase family M23 BB1398 PF08525 Opacity-associated protein A N-terminal motif BB1398 PF01476 LysM domain BB1400 PF01176 Translation initiation factor 1A / IF-1 BB1402 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BB1402 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BB1404 PF02293 AmiS/UreI family transporter BB1405 PF03069 Acetamidase/Formamidase family BB1408 PF01116 Fructose-bisphosphate aldolase class-II BB1410 PF01259 SAICAR synthetase BB1411 PF15723 Motility quorum-sensing regulator, toxin of MqsA BB1412 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA BB1414 PF02600 Disulfide bond formation protein DsbB BB1415 PF00731 AIR carboxylase BB1416 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain BB1416 PF02222 ATP-grasp domain BB1417 PF03481 Putative GTP-binding controlling metal-binding BB1417 PF01300 Telomere recombination BB1418 PF00497 Bacterial extracellular solute-binding proteins, family 3 BB1419 PF01614 Bacterial transcriptional regulator BB1419 PF09339 IclR helix-turn-helix domain BB1420 PF00491 Arginase family BB1421 PF00497 Bacterial extracellular solute-binding proteins, family 3 BB1422 PF00528 Binding-protein-dependent transport system inner membrane component BB1423 PF00005 ABC transporter BB1424 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BB1424 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BB1426 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BB1426 PF02770 Acyl-CoA dehydrogenase, middle domain BB1426 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BB1427 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BB1427 PF00205 Thiamine pyrophosphate enzyme, central domain BB1427 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BB1428 PF03466 LysR substrate binding domain BB1428 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB1429 PF02899 Phage integrase, N-terminal SAM-like domain BB1429 PF00589 Phage integrase family BB1430 PF04073 Aminoacyl-tRNA editing domain BB1431 PF01174 SNO glutamine amidotransferase family BB1433 PF00768 D-alanyl-D-alanine carboxypeptidase BB1437 PF00580 UvrD/REP helicase N-terminal domain BB1437 PF13361 UvrD-like helicase C-terminal domain BB1437 PF12705 PD-(D/E)XK nuclease superfamily BB1438 PF12169 DNA polymerase III subunits gamma and tau domain III BB1438 PF12168 DNA polymerase III subunits tau domain IV DnaB-binding BB1438 PF12170 DNA polymerase III tau subunit V interacting with alpha BB1439 PF02575 YbaB/EbfC DNA-binding family BB1440 PF02132 RecR protein BB1440 PF13662 Toprim domain BB1441 PF02515 CoA-transferase family III BB1443 PF00005 ABC transporter BB1444 PF00528 Binding-protein-dependent transport system inner membrane component BB1445 PF00923 Transaldolase/Fructose-6-phosphate aldolase BB1446 PF00117 Glutamine amidotransferase class-I BB1446 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain BB1447 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BB1447 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BB1447 PF02142 MGS-like domain BB1448 PF00106 short chain dehydrogenase BB1449 PF00300 Histidine phosphatase superfamily (branch 1) BB1451 PF00005 ABC transporter BB1451 PF08402 TOBE domain BB1452 PF00528 Binding-protein-dependent transport system inner membrane component BB1455 PF00860 Permease family BB1456 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BB1456 PF02203 Tar ligand binding domain homologue BB1456 PF00672 HAMP domain BB1457 PF03449 Transcription elongation factor, N-terminal BB1457 PF01272 Transcription elongation factor, GreA/GreB, C-term BB1458 PF01985 CRS1 / YhbY (CRM) domain BB1459 PF01728 FtsJ-like methyltransferase BB1460 PF06480 FtsH Extracellular BB1460 PF17862 AAA+ lid domain BB1460 PF00004 ATPase family associated with various cellular activities (AAA) BB1460 PF01434 Peptidase family M41 BB1461 PF00809 Pterin binding enzyme BB1462 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BB1462 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BB1462 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BB1462 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BB1464 PF02541 Ppx/GppA phosphatase family BB1465 PF13089 Polyphosphate kinase N-terminal domain BB1465 PF17941 Polyphosphate kinase C-terminal domain 1 BB1465 PF13090 Polyphosphate kinase C-terminal domain 2 BB1465 PF02503 Polyphosphate kinase middle domain BB1466 PF12849 PBP superfamily domain BB1467 PF00528 Binding-protein-dependent transport system inner membrane component BB1468 PF00528 Binding-protein-dependent transport system inner membrane component BB1469 PF00005 ABC transporter BB1471 PF03401 Tripartite tricarboxylate transporter family receptor BB1473 PF01266 FAD dependent oxidoreductase BB1474 PF01381 Helix-turn-helix BB1475 PF13618 Gluconate 2-dehydrogenase subunit 3 BB1476 PF00732 GMC oxidoreductase BB1476 PF05199 GMC oxidoreductase BB1477 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BB1477 PF00034 Cytochrome c BB1480 PF00465 Iron-containing alcohol dehydrogenase BB1481 PF00171 Aldehyde dehydrogenase family BB1484 PF00005 ABC transporter BB1484 PF12399 Branched-chain amino acid ATP-binding cassette transporter BB1485 PF00005 ABC transporter BB1486 PF02653 Branched-chain amino acid transport system / permease component BB1489 PF00005 ABC transporter BB1490 PF00005 ABC transporter BB1490 PF12399 Branched-chain amino acid ATP-binding cassette transporter BB1492 PF02653 Branched-chain amino acid transport system / permease component BB1493 PF13458 Periplasmic binding protein BB1497 PF03401 Tripartite tricarboxylate transporter family receptor BB1499 PF00743 Flavin-binding monooxygenase-like BB1500 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BB1500 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BB1501 PF00378 Enoyl-CoA hydratase/isomerase BB1502 PF02515 CoA-transferase family III BB1504 PF02653 Branched-chain amino acid transport system / permease component BB1505 PF11862 Domain of unknown function (DUF3382) BB1505 PF02653 Branched-chain amino acid transport system / permease component BB1506 PF12399 Branched-chain amino acid ATP-binding cassette transporter BB1506 PF00005 ABC transporter BB1507 PF00005 ABC transporter BB1508 PF01425 Amidase BB1509 PF01266 FAD dependent oxidoreductase BB1514 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BB1515 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component BB1516 PF03480 Bacterial extracellular solute-binding protein, family 7 BB1518 PF01557 Fumarylacetoacetate (FAA) hydrolase family BB1519 PF07729 FCD domain BB1519 PF00392 Bacterial regulatory proteins, gntR family BB1520 PF01037 Lrp/AsnC ligand binding domain BB1521 PF00291 Pyridoxal-phosphate dependent enzyme BB1522 PF01546 Peptidase family M20/M25/M40 BB1522 PF07687 Peptidase dimerisation domain BB1523 PF00497 Bacterial extracellular solute-binding proteins, family 3 BB1524 PF00528 Binding-protein-dependent transport system inner membrane component BB1525 PF00528 Binding-protein-dependent transport system inner membrane component BB1526 PF00005 ABC transporter BB1528 PF00155 Aminotransferase class I and II BB1529 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BB1529 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BB1530 PF07687 Peptidase dimerisation domain BB1530 PF01546 Peptidase family M20/M25/M40 BB1531 PF17645 Arylmalonate decarboxylase BB1532 PF03328 HpcH/HpaI aldolase/citrate lyase family BB1534 PF03401 Tripartite tricarboxylate transporter family receptor BB1535 PF03401 Tripartite tricarboxylate transporter family receptor BB1538 PF06826 Predicted Permease Membrane Region BB1539 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB1539 PF03466 LysR substrate binding domain BB1542 PF01053 Cys/Met metabolism PLP-dependent enzyme BB1544 PF03401 Tripartite tricarboxylate transporter family receptor BB1545 PF00384 Molybdopterin oxidoreductase BB1545 PF01568 Molydopterin dinucleotide binding domain BB1546 PF00795 Carbon-nitrogen hydrolase BB1547 PF00005 ABC transporter BB1548 PF00005 ABC transporter BB1548 PF12399 Branched-chain amino acid ATP-binding cassette transporter BB1550 PF02653 Branched-chain amino acid transport system / permease component BB1551 PF13458 Periplasmic binding protein BB1554 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BB1556 PF00664 ABC transporter transmembrane region BB1556 PF00005 ABC transporter BB1557 PF05724 Thiopurine S-methyltransferase (TPMT) BB1561 PF07238 PilZ domain BB1561 PF07317 Flagellar regulator YcgR BB1563 PF00171 Aldehyde dehydrogenase family BB1564 PF01966 HD domain BB1566 PF00364 Biotin-requiring enzyme BB1567 PF02436 Conserved carboxylase domain BB1567 PF00682 HMGL-like BB1567 PF00364 Biotin-requiring enzyme BB1571 PF07702 UTRA domain BB1571 PF00392 Bacterial regulatory proteins, gntR family BB1572 PF00289 Biotin carboxylase, N-terminal domain BB1572 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BB1572 PF02785 Biotin carboxylase C-terminal domain BB1573 PF01039 Carboxyl transferase domain BB1574 PF00364 Biotin-requiring enzyme BB1575 PF13607 Succinyl-CoA ligase like flavodoxin domain BB1575 PF00583 Acetyltransferase (GNAT) family BB1575 PF13380 CoA binding domain BB1577 PF03480 Bacterial extracellular solute-binding protein, family 7 BB1579 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BB1581 PF14759 Reductase C-terminal BB1581 PF07992 Pyridine nucleotide-disulphide oxidoreductase BB1583 PF01557 Fumarylacetoacetate (FAA) hydrolase family BB1584 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB1584 PF03466 LysR substrate binding domain BB1586 PF00355 Rieske [2Fe-2S] domain BB1587 PF01557 Fumarylacetoacetate (FAA) hydrolase family BB1588 PF02423 Ornithine cyclodeaminase/mu-crystallin family BB1590 PF13577 SnoaL-like domain BB1591 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BB1591 PF00355 Rieske [2Fe-2S] domain BB1593 PF02653 Branched-chain amino acid transport system / permease component BB1595 PF09383 NIL domain BB1595 PF00005 ABC transporter BB1596 PF00005 ABC transporter BB1599 PF03401 Tripartite tricarboxylate transporter family receptor BB1605 PF01042 Endoribonuclease L-PSP BB1606 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BB1607 PF03466 LysR substrate binding domain BB1607 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB1612 PF00771 FHIPEP family BB1625 PF01514 Secretory protein of YscJ/FliF family BB1627 PF02108 Flagellar assembly protein FliH BB1628 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BB1628 PF02874 ATP synthase alpha/beta family, beta-barrel domain BB1628 PF18269 T3SS EscN ATPase C-terminal domain BB1631 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BB1632 PF00813 FliP family BB1633 PF01313 Bacterial export proteins, family 3 BB1634 PF01311 Bacterial export proteins, family 1 BB1635 PF01312 FlhB HrpN YscU SpaS Family BB1638 PF08281 Sigma-70, region 4 BB1638 PF04542 Sigma-70 region 2 BB1642 PF00672 HAMP domain BB1642 PF07228 Stage II sporulation protein E (SpoIIE) BB1644 PF01168 Alanine racemase, N-terminal domain BB1644 PF00842 Alanine racemase, C-terminal domain BB1645 PF13581 Histidine kinase-like ATPase domain BB1646 PF01740 STAS domain BB1647 PF13091 PLD-like domain BB1647 PF13396 Phospholipase_D-nuclease N-terminal BB1648 PF13673 Acetyltransferase (GNAT) domain BB1649 PF03797 Autotransporter beta-domain BB1653 PF04228 Putative neutral zinc metallopeptidase BB1654 PF01300 Telomere recombination BB1655 PF02163 Peptidase family M50 BB1656 PF00701 Dihydrodipicolinate synthetase family BB1657 PF06804 NlpB/DapX lipoprotein BB1658 PF16970 Type-1 fimbrial protein, A BB1659 PF08007 Cupin superfamily protein BB1660 PF01624 MutS domain I BB1660 PF05188 MutS domain II BB1660 PF05192 MutS domain III BB1660 PF05190 MutS family domain IV BB1660 PF00488 MutS domain V BB1668 PF00145 C-5 cytosine-specific DNA methylase BB1674 PF02195 ParB-like nuclease domain BB1674 PF17762 HTH domain found in ParB protein BB1678 PF01381 Helix-turn-helix BB1678 PF00717 Peptidase S24-like BB1693 PF04860 Phage portal protein BB1694 PF00574 Clp protease BB1718 PF07311 Dodecin BB1719 PF03358 NADPH-dependent FMN reductase BB1725 PF05552 Conserved TM helix BB1725 PF00924 Mechanosensitive ion channel BB1727 PF03401 Tripartite tricarboxylate transporter family receptor BB1728 PF00588 SpoU rRNA Methylase family BB1729 PF00459 Inositol monophosphatase family BB1730 PF03741 Integral membrane protein TerC family BB1730 PF03471 Transporter associated domain BB1731 PF02673 Bacitracin resistance protein BacA BB1732 PF00149 Calcineurin-like phosphoesterase BB1733 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD BB1735 PF01406 tRNA synthetases class I (C) catalytic domain BB1735 PF09190 DALR domain BB1736 PF02805 Metal binding domain of Ada BB1736 PF12833 Helix-turn-helix domain BB1736 PF06029 AlkA N-terminal domain BB1736 PF00730 HhH-GPD superfamily base excision DNA repair protein BB1737 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit BB1738 PF01171 PP-loop family BB1738 PF09179 TilS substrate binding domain BB1739 PF01842 ACT domain BB1739 PF00696 Amino acid kinase family BB1739 PF13840 ACT domain BB1742 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BB1742 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BB1743 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component BB1744 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BB1745 PF03480 Bacterial extracellular solute-binding protein, family 7 BB1746 PF00561 alpha/beta hydrolase fold BB1747 PF01958 Domain of unknown function DUF108 BB1747 PF03447 Homoserine dehydrogenase, NAD binding domain BB1750 PF03466 LysR substrate binding domain BB1750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB1753 PF00528 Binding-protein-dependent transport system inner membrane component BB1754 PF00528 Binding-protein-dependent transport system inner membrane component BB1755 PF08402 TOBE domain BB1755 PF00005 ABC transporter BB1756 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BB1756 PF07992 Pyridine nucleotide-disulphide oxidoreductase BB1757 PF09339 IclR helix-turn-helix domain BB1757 PF01614 Bacterial transcriptional regulator BB1758 PF13380 CoA binding domain BB1759 PF03401 Tripartite tricarboxylate transporter family receptor BB1760 PF01042 Endoribonuclease L-PSP BB1765 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BB1767 PF00535 Glycosyl transferase family 2 BB1768 PF01522 Polysaccharide deacetylase BB1768 PF14883 Hypothetical glycosyl hydrolase family 13 BB1771 PF12802 MarR family BB1772 PF13458 Periplasmic binding protein BB1774 PF00005 ABC transporter BB1774 PF12399 Branched-chain amino acid ATP-binding cassette transporter BB1775 PF00005 ABC transporter BB1776 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BB1776 PF00034 Cytochrome c BB1776 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BB1777 PF00111 2Fe-2S iron-sulfur cluster binding domain BB1777 PF01799 [2Fe-2S] binding domain BB1778 PF01494 FAD binding domain BB1779 PF17645 Arylmalonate decarboxylase BB1780 PF00561 alpha/beta hydrolase fold BB1782 PF00857 Isochorismatase family BB1783 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BB1783 PF00034 Cytochrome c BB1783 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BB1784 PF00970 Oxidoreductase FAD-binding domain BB1784 PF00042 Globin BB1784 PF00175 Oxidoreductase NAD-binding domain BB1785 PF00593 TonB dependent receptor BB1785 PF07715 TonB-dependent Receptor Plug Domain BB1787 PF03401 Tripartite tricarboxylate transporter family receptor BB1788 PF16347 Domain of unknown function (DUF4976) BB1788 PF00884 Sulfatase BB1789 PF00501 AMP-binding enzyme BB1789 PF13193 AMP-binding enzyme C-terminal domain BB1791 PF00108 Thiolase, N-terminal domain BB1791 PF02803 Thiolase, C-terminal domain BB1792 PF00378 Enoyl-CoA hydratase/isomerase BB1792 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BB1792 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BB1794 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BB1794 PF00378 Enoyl-CoA hydratase/isomerase BB1794 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BB1795 PF00108 Thiolase, N-terminal domain BB1795 PF02803 Thiolase, C-terminal domain BB1796 PF02770 Acyl-CoA dehydrogenase, middle domain BB1796 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BB1796 PF09317 Domain of unknown function (DUF1974) BB1796 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BB1798 PF00196 Bacterial regulatory proteins, luxR family BB1798 PF00072 Response regulator receiver domain BB1800 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain BB1800 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I BB1800 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II BB1800 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III BB1801 PF00342 Phosphoglucose isomerase BB1802 PF00132 Bacterial transferase hexapeptide (six repeats) BB1804 PF02146 Sir2 family BB1805 PF00459 Inositol monophosphatase family BB1806 PF00171 Aldehyde dehydrogenase family BB1807 PF00202 Aminotransferase class-III BB1808 PF00392 Bacterial regulatory proteins, gntR family BB1808 PF00155 Aminotransferase class I and II BB1810 PF00580 UvrD/REP helicase N-terminal domain BB1810 PF13361 UvrD-like helicase C-terminal domain BB1811 PF01544 CorA-like Mg2+ transporter protein BB1813 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BB1814 PF00528 Binding-protein-dependent transport system inner membrane component BB1815 PF00528 Binding-protein-dependent transport system inner membrane component BB1815 PF12911 N-terminal TM domain of oligopeptide transport permease C BB1816 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BB1816 PF00005 ABC transporter BB1817 PF01047 MarR family BB1819 PF08479 POTRA domain, ShlB-type BB1819 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB BB1820 PF03707 Bacterial signalling protein N terminal repeat BB1820 PF00990 Diguanylate cyclase, GGDEF domain BB1820 PF00563 EAL domain BB1826 PF00263 Bacterial type II and III secretion system protein BB1826 PF13629 Pilus formation protein N terminal region BB1826 PF04972 BON domain BB1828 PF00437 Type II/IV secretion system protein BB1834 PF00158 Sigma-54 interaction domain BB1834 PF00072 Response regulator receiver domain BB1834 PF02954 Bacterial regulatory protein, Fis family BB1837 PF08281 Sigma-70, region 4 BB1837 PF04542 Sigma-70 region 2 BB1839 PF00034 Cytochrome c BB1840 PF01132 Elongation factor P (EF-P) OB domain BB1840 PF08207 Elongation factor P (EF-P) KOW-like domain BB1840 PF09285 Elongation factor P, C-terminal BB1843 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BB1844 PF00694 Aconitase C-terminal domain BB1844 PF00330 Aconitase family (aconitate hydratase) BB1846 PF00593 TonB dependent receptor BB1846 PF07715 TonB-dependent Receptor Plug Domain BB1848 PF00691 OmpA family BB1850 PF00330 Aconitase family (aconitate hydratase) BB1850 PF11791 Aconitate B N-terminal domain BB1850 PF06434 Aconitate hydratase 2 N-terminus BB1855 PF00892 EamA-like transporter family BB1856 PF01925 Sulfite exporter TauE/SafE BB1859 PF12795 Mechanosensitive ion channel porin domain BB1859 PF12794 Mechanosensitive ion channel inner membrane domain 1 BB1859 PF00924 Mechanosensitive ion channel BB1860 PF03466 LysR substrate binding domain BB1860 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB1861 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain BB1861 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain BB1862 PF01758 Sodium Bile acid symporter family BB1863 PF03466 LysR substrate binding domain BB1863 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB1864 PF03797 Autotransporter beta-domain BB1864 PF03212 Pertactin BB1865 PF02545 Maf-like protein BB1866 PF02590 Predicted SPOUT methyltransferase BB1868 PF01467 Cytidylyltransferase-like BB1869 PF01218 Coproporphyrinogen III oxidase BB1870 PF02843 Phosphoribosylglycinamide synthetase, C domain BB1870 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain BB1870 PF02844 Phosphoribosylglycinamide synthetase, N domain BB1871 PF01709 Transcriptional regulator BB1872 PF05872 Bacterial protein of unknown function (DUF853) BB1873 PF00202 Aminotransferase class-III BB1874 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BB1875 PF00171 Aldehyde dehydrogenase family BB1877 PF07687 Peptidase dimerisation domain BB1877 PF01546 Peptidase family M20/M25/M40 BB1878 PF00850 Histone deacetylase domain BB1879 PF07883 Cupin domain BB1880 PF00202 Aminotransferase class-III BB1881 PF00005 ABC transporter BB1881 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BB1882 PF00528 Binding-protein-dependent transport system inner membrane component BB1882 PF12911 N-terminal TM domain of oligopeptide transport permease C BB1883 PF00528 Binding-protein-dependent transport system inner membrane component BB1884 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BB1885 PF00155 Aminotransferase class I and II BB1885 PF00392 Bacterial regulatory proteins, gntR family BB1886 PF00180 Isocitrate/isopropylmalate dehydrogenase BB1887 PF07690 Major Facilitator Superfamily BB1888 PF00529 HlyD membrane-fusion protein of T1SS BB1888 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BB1889 PF02321 Outer membrane efflux protein BB1890 PF01047 MarR family BB1892 PF00892 EamA-like transporter family BB1893 PF08240 Alcohol dehydrogenase GroES-like domain BB1893 PF00107 Zinc-binding dehydrogenase BB1894 PF01435 Peptidase family M48 BB1896 PF00581 Rhodanese-like domain BB1898 PF03466 LysR substrate binding domain BB1898 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB1899 PF08402 TOBE domain BB1899 PF00005 ABC transporter BB1900 PF00528 Binding-protein-dependent transport system inner membrane component BB1901 PF13419 Haloacid dehalogenase-like hydrolase BB1908 PF03401 Tripartite tricarboxylate transporter family receptor BB1910 PF02609 Exonuclease VII small subunit BB1911 PF00348 Polyprenyl synthetase BB1912 PF13292 1-deoxy-D-xylulose-5-phosphate synthase BB1912 PF02780 Transketolase, C-terminal domain BB1912 PF02779 Transketolase, pyrimidine binding domain BB1913 PF02649 Type I GTP cyclohydrolase folE2 BB1914 PF01250 Ribosomal protein S6 BB1916 PF01084 Ribosomal protein S18 BB1917 PF01281 Ribosomal protein L9, N-terminal domain BB1917 PF03948 Ribosomal protein L9, C-terminal domain BB1919 PF00772 DnaB-like helicase N terminal domain BB1919 PF03796 DnaB-like helicase C terminal domain BB1920 PF13593 SBF-like CPA transporter family (DUF4137) BB1921 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BB1922 PF02562 PhoH-like protein BB1922 PF13638 PIN domain BB1923 PF00578 AhpC/TSA family BB1924 PF04430 Protein of unknown function (DUF498/DUF598) BB1925 PF00155 Aminotransferase class I and II BB1926 PF00742 Homoserine dehydrogenase BB1926 PF01842 ACT domain BB1926 PF03447 Homoserine dehydrogenase, NAD binding domain BB1927 PF00291 Pyridoxal-phosphate dependent enzyme BB1927 PF14821 Threonine synthase N terminus BB1929 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain BB1930 PF17432 Domain of unknown function (DUF3458_C) ARM repeats BB1930 PF11940 Domain of unknown function (DUF3458) Ig-like fold BB1930 PF01433 Peptidase family M1 domain BB1933 PF00795 Carbon-nitrogen hydrolase BB1934 PF01523 Putative modulator of DNA gyrase BB1935 PF00793 DAHP synthetase I family BB1936 PF05594 Haemagluttinin repeat BB1936 PF13018 Extended Signal Peptide of Type V secretion system BB1936 PF13332 Hemagglutinin repeat BB1936 PF13332 Hemagglutinin repeat BB1936 PF05860 haemagglutination activity domain BB1936 PF05860 haemagglutination activity domain BB1936 PF13018 Extended Signal Peptide of Type V secretion system BB1936 PF05594 Haemagluttinin repeat BB1937 PF02913 FAD linked oxidases, C-terminal domain BB1937 PF01565 FAD binding domain BB1938 PF02913 FAD linked oxidases, C-terminal domain BB1938 PF01565 FAD binding domain BB1939 PF01565 FAD binding domain BB1940 PF13183 4Fe-4S dicluster domain BB1940 PF02754 Cysteine-rich domain BB1941 PF00756 Putative esterase BB1942 PF07715 TonB-dependent Receptor Plug Domain BB1942 PF00593 TonB dependent receptor BB1944 PF02233 NAD(P) transhydrogenase beta subunit BB1945 PF12769 4TM region of pyridine nucleotide transhydrogenase, mitoch BB1946 PF05222 Alanine dehydrogenase/PNT, N-terminal domain BB1946 PF01262 Alanine dehydrogenase/PNT, C-terminal domain BB1948 PF03401 Tripartite tricarboxylate transporter family receptor BB1949 PF03466 LysR substrate binding domain BB1949 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB1951 PF01925 Sulfite exporter TauE/SafE BB1952 PF00043 Glutathione S-transferase, C-terminal domain BB1952 PF13417 Glutathione S-transferase, N-terminal domain BB1953 PF00206 Lyase BB1953 PF08328 Adenylosuccinate lyase C-terminal BB1954 PF01322 Cytochrome C' BB1958 PF01594 AI-2E family transporter BB1960 PF00990 Diguanylate cyclase, GGDEF domain BB1961 PF00072 Response regulator receiver domain BB1966 PF12867 DinB superfamily BB1966 PF03781 Sulfatase-modifying factor enzyme 1 BB1967 PF10017 Histidine-specific methyltransferase, SAM-dependent BB1969 PF13091 PLD-like domain BB1969 PF13396 Phospholipase_D-nuclease N-terminal BB1970 PF01645 Conserved region in glutamate synthase BB1971 PF04143 Sulphur transport BB1972 PF03547 Membrane transport protein BB1973 PF13673 Acetyltransferase (GNAT) domain BB1975 PF08461 Ribonuclease R winged-helix domain BB1975 PF17876 Cold shock domain BB1975 PF00575 S1 RNA binding domain BB1975 PF00773 RNB domain BB1975 PF08206 Ribonuclease B OB domain BB1976 PF08032 RNA 2'-O ribose methyltransferase substrate binding BB1976 PF00588 SpoU rRNA Methylase family BB1977 PF01053 Cys/Met metabolism PLP-dependent enzyme BB1978 PF13640 2OG-Fe(II) oxygenase superfamily BB1978 PF18331 PKHD-type hydroxylase C-terminal domain BB1979 PF00216 Bacterial DNA-binding protein BB1981 PF01618 MotA/TolQ/ExbB proton channel family BB1982 PF02472 Biopolymer transport protein ExbD/TolR BB1983 PF00072 Response regulator receiver domain BB1983 PF00486 Transcriptional regulatory protein, C terminal BB1984 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BB1984 PF08521 Two-component sensor kinase N-terminal BB1984 PF00512 His Kinase A (phospho-acceptor) domain BB1985 PF02705 K+ potassium transporter BB1986 PF00764 Arginosuccinate synthase BB1987 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BB1987 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BB1988 PF00202 Aminotransferase class-III BB1990 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB1990 PF03466 LysR substrate binding domain BB1992 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BB1992 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BB1993 PF03401 Tripartite tricarboxylate transporter family receptor BB1996 PF07729 FCD domain BB1996 PF00392 Bacterial regulatory proteins, gntR family BB1997 PF02615 Malate/L-lactate dehydrogenase BB1998 PF00920 Dehydratase family BB1999 PF03401 Tripartite tricarboxylate transporter family receptor BB2000 PF03328 HpcH/HpaI aldolase/citrate lyase family BB2001 PF01649 Ribosomal protein S20 BB2003 PF03023 Lipid II flippase MurJ BB2004 PF00106 short chain dehydrogenase BB2005 PF05191 Adenylate kinase, active site lid BB2006 PF02348 Cytidylyltransferase BB2007 PF03966 Trm112p-like protein BB2008 PF02606 Tetraacyldisaccharide-1-P 4'-kinase BB2009 PF02472 Biopolymer transport protein ExbD/TolR BB2010 PF01618 MotA/TolQ/ExbB proton channel family BB2011 PF02601 Exonuclease VII, large subunit BB2011 PF13742 OB-fold nucleic acid binding domain BB2012 PF02777 Iron/manganese superoxide dismutases, C-terminal domain BB2012 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain BB2014 PF02803 Thiolase, C-terminal domain BB2014 PF00108 Thiolase, N-terminal domain BB2016 PF00313 'Cold-shock' DNA-binding domain BB2017 PF02617 ATP-dependent Clp protease adaptor protein ClpS BB2018 PF01835 MG2 domain BB2018 PF07703 Alpha-2-macroglobulin bait region domain BB2018 PF11974 Bacterial alpha-2-macroglobulin MG3 domain BB2018 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain BB2018 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain BB2018 PF00207 Alpha-2-macroglobulin family BB2018 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain BB2018 PF17962 Bacterial macroglobulin domain 6 BB2019 PF00905 Penicillin binding protein transpeptidase domain BB2019 PF00912 Transglycosylase BB2019 PF06832 Penicillin-Binding Protein C-terminus Family BB2020 PF07724 AAA domain (Cdc48 subfamily) BB2020 PF10431 C-terminal, D2-small domain, of ClpB protein BB2020 PF17871 AAA lid domain BB2020 PF02861 Clp amino terminal domain, pathogenicity island component BB2020 PF00004 ATPase family associated with various cellular activities (AAA) BB2021 PF04403 Paraquat-inducible protein A BB2022 PF02470 MlaD protein BB2024 PF14850 DNA-binding domain of Proline dehydrogenase BB2024 PF01619 Proline dehydrogenase BB2024 PF00171 Aldehyde dehydrogenase family BB2024 PF18327 Proline utilization A proline dehydrogenase N-terminal domain BB2025 PF13458 Periplasmic binding protein BB2026 PF02653 Branched-chain amino acid transport system / permease component BB2027 PF02653 Branched-chain amino acid transport system / permease component BB2027 PF11862 Domain of unknown function (DUF3382) BB2028 PF12399 Branched-chain amino acid ATP-binding cassette transporter BB2028 PF00005 ABC transporter BB2029 PF00005 ABC transporter BB2030 PF07690 Major Facilitator Superfamily BB2031 PF00440 Bacterial regulatory proteins, tetR family BB2033 PF03797 Autotransporter beta-domain BB2033 PF03212 Pertactin BB2034 PF00909 Ammonium Transporter Family BB2035 PF00543 Nitrogen regulatory protein P-II BB2036 PF04380 Membrane fusogenic activity BB2037 PF01078 Magnesium chelatase, subunit ChlI BB2037 PF13335 Magnesium chelatase, subunit ChlI C-terminal BB2038 PF01632 Ribosomal protein L35 BB2039 PF00453 Ribosomal protein L20 BB2040 PF01409 tRNA synthetases class II core domain (F) BB2040 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain BB2041 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain BB2041 PF03483 B3/4 domain BB2041 PF03484 tRNA synthetase B5 domain BB2041 PF03147 Ferredoxin-fold anticodon binding domain BB2041 PF01588 Putative tRNA binding domain BB2042 PF00216 Bacterial DNA-binding protein BB2046 PF13847 Methyltransferase domain BB2051 PF01037 Lrp/AsnC ligand binding domain BB2054 PF00392 Bacterial regulatory proteins, gntR family BB2054 PF00155 Aminotransferase class I and II BB2056 PF04231 Endonuclease I BB2060 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BB2060 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BB2061 PF04381 Putative exonuclease, RdgC BB2063 PF02515 CoA-transferase family III BB2064 PF03466 LysR substrate binding domain BB2064 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB2065 PF00108 Thiolase, N-terminal domain BB2065 PF02803 Thiolase, C-terminal domain BB2068 PF00106 short chain dehydrogenase BB2070 PF00528 Binding-protein-dependent transport system inner membrane component BB2071 PF08402 TOBE domain BB2071 PF00005 ABC transporter BB2072 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BB2072 PF00378 Enoyl-CoA hydratase/isomerase BB2072 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BB2073 PF08946 Osmosensory transporter coiled coil BB2073 PF00083 Sugar (and other) transporter BB2074 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BB2074 PF08521 Two-component sensor kinase N-terminal BB2074 PF00512 His Kinase A (phospho-acceptor) domain BB2075 PF00486 Transcriptional regulatory protein, C terminal BB2075 PF00072 Response regulator receiver domain BB2076 PF00154 recA bacterial DNA recombination protein BB2077 PF02631 RecX family BB2078 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB2078 PF03466 LysR substrate binding domain BB2079 PF08267 Cobalamin-independent synthase, N-terminal domain BB2079 PF01717 Cobalamin-independent synthase, Catalytic domain BB2081 PF08442 ATP-grasp domain BB2081 PF00549 CoA-ligase BB2082 PF02629 CoA binding domain BB2082 PF00549 CoA-ligase BB2083 PF03741 Integral membrane protein TerC family BB2084 PF03741 Integral membrane protein TerC family BB2085 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain BB2085 PF03900 Porphobilinogen deaminase, C-terminal domain BB2089 PF00719 Inorganic pyrophosphatase BB2090 PF01557 Fumarylacetoacetate (FAA) hydrolase family BB2097 PF04972 BON domain BB2097 PF00263 Bacterial type II and III secretion system protein BB2097 PF13629 Pilus formation protein N terminal region BB2098 PF00437 Type II/IV secretion system protein BB2102 PF01636 Phosphotransferase enzyme family BB2103 PF01207 Dihydrouridine synthase (Dus) BB2105 PF03631 Virulence factor BrkB BB2107 PF02696 Uncharacterized ACR, YdiU/UPF0061 family BB2108 PF00072 Response regulator receiver domain BB2108 PF00486 Transcriptional regulatory protein, C terminal BB2109 PF07689 KaiB domain BB2109 PF00512 His Kinase A (phospho-acceptor) domain BB2109 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BB2110 PF00990 Diguanylate cyclase, GGDEF domain BB2110 PF03707 Bacterial signalling protein N terminal repeat BB2110 PF00563 EAL domain BB2110 PF13188 PAS domain BB2111 PF01264 Chorismate synthase BB2112 PF01435 Peptidase family M48 BB2113 PF03205 Molybdopterin guanine dinucleotide synthesis protein B BB2114 PF03453 MoeA N-terminal region (domain I and II) BB2114 PF00994 Probable molybdopterin binding domain BB2114 PF03454 MoeA C-terminal region (domain IV) BB2115 PF12804 MobA-like NTP transferase domain BB2116 PF10609 NUBPL iron-transfer P-loop NTPase BB2121 PF01568 Molydopterin dinucleotide binding domain BB2121 PF00384 Molybdopterin oxidoreductase BB2121 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BB2122 PF13247 4Fe-4S dicluster domain BB2127 PF00528 Binding-protein-dependent transport system inner membrane component BB2128 PF00005 ABC transporter BB2129 PF12849 PBP superfamily domain BB2130 PF00330 Aconitase family (aconitate hydratase) BB2131 PF00694 Aconitase C-terminal domain BB2132 PF00180 Isocitrate/isopropylmalate dehydrogenase BB2133 PF02774 Semialdehyde dehydrogenase, dimerisation domain BB2133 PF01118 Semialdehyde dehydrogenase, NAD binding domain BB2135 PF01416 tRNA pseudouridine synthase BB2136 PF03480 Bacterial extracellular solute-binding protein, family 7 BB2138 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BB2139 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase BB2143 PF03401 Tripartite tricarboxylate transporter family receptor BB2145 PF00230 Major intrinsic protein BB2147 PF04055 Radical SAM superfamily BB2147 PF06969 HemN C-terminal domain BB2149 PF00196 Bacterial regulatory proteins, luxR family BB2150 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BB2150 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BB2150 PF03129 Anticodon binding domain BB2150 PF02824 TGS domain BB2151 PF00707 Translation initiation factor IF-3, C-terminal domain BB2151 PF05198 Translation initiation factor IF-3, N-terminal domain BB2152 PF02951 Prokaryotic glutathione synthetase, N-terminal domain BB2152 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain BB2154 PF00381 PTS HPr component phosphorylation site BB2155 PF02896 PEP-utilising enzyme, TIM barrel domain BB2155 PF00391 PEP-utilising enzyme, mobile domain BB2155 PF05524 PEP-utilising enzyme, N-terminal BB2157 PF02566 OsmC-like protein BB2158 PF02423 Ornithine cyclodeaminase/mu-crystallin family BB2160 PF00497 Bacterial extracellular solute-binding proteins, family 3 BB2161 PF00528 Binding-protein-dependent transport system inner membrane component BB2162 PF00528 Binding-protein-dependent transport system inner membrane component BB2163 PF00005 ABC transporter BB2164 PF00692 dUTPase BB2166 PF09335 SNARE associated Golgi protein BB2168 PF01037 Lrp/AsnC ligand binding domain BB2170 PF04127 DNA / pantothenate metabolism flavoprotein BB2170 PF02441 Flavoprotein BB2171 PF01252 Signal peptidase (SPase) II BB2172 PF00133 tRNA synthetases class I (I, L, M and V) BB2172 PF08264 Anticodon-binding domain of tRNA BB2172 PF06827 Zinc finger found in FPG and IleRS BB2173 PF06574 FAD synthetase BB2173 PF01687 Riboflavin kinase BB2174 PF00551 Formyl transferase BB2175 PF01029 NusB family BB2175 PF01189 16S rRNA methyltransferase RsmB/F BB2178 PF00580 UvrD/REP helicase N-terminal domain BB2178 PF13361 UvrD-like helicase C-terminal domain BB2179 PF07715 TonB-dependent Receptor Plug Domain BB2180 PF00005 ABC transporter BB2180 PF12848 ABC transporter BB2181 PF05175 Methyltransferase small domain BB2182 PF01546 Peptidase family M20/M25/M40 BB2182 PF07687 Peptidase dimerisation domain BB2183 PF00132 Bacterial transferase hexapeptide (six repeats) BB2183 PF14602 Hexapeptide repeat of succinyl-transferase BB2183 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal BB2184 PF00155 Aminotransferase class I and II BB2185 PF00589 Phage integrase family BB2192 PF03837 RecT family BB2230 PF06791 Prophage tail length tape measure protein BB2244 PF02586 SOS response associated peptidase (SRAP) BB2249 PF00313 'Cold-shock' DNA-binding domain BB2251 PF00313 'Cold-shock' DNA-binding domain BB2252 PF03350 Uncharacterized protein family, UPF0114 BB2253 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BB2253 PF05698 Bacterial trigger factor protein (TF) C-terminus BB2253 PF05697 Bacterial trigger factor protein (TF) BB2254 PF00574 Clp protease BB2255 PF07724 AAA domain (Cdc48 subfamily) BB2255 PF10431 C-terminal, D2-small domain, of ClpB protein BB2255 PF06689 ClpX C4-type zinc finger BB2256 PF00004 ATPase family associated with various cellular activities (AAA) BB2256 PF05362 Lon protease (S16) C-terminal proteolytic domain BB2256 PF02190 ATP-dependent protease La (LON) substrate-binding domain BB2257 PF03466 LysR substrate binding domain BB2257 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB2258 PF02515 CoA-transferase family III BB2259 PF03401 Tripartite tricarboxylate transporter family receptor BB2261 PF00378 Enoyl-CoA hydratase/isomerase BB2263 PF02803 Thiolase, C-terminal domain BB2263 PF00108 Thiolase, N-terminal domain BB2265 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BB2265 PF02770 Acyl-CoA dehydrogenase, middle domain BB2265 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BB2267 PF01144 Coenzyme A transferase BB2268 PF01144 Coenzyme A transferase BB2269 PF03401 Tripartite tricarboxylate transporter family receptor BB2270 PF03212 Pertactin BB2270 PF03797 Autotransporter beta-domain BB2271 PF00717 Peptidase S24-like BB2271 PF01726 LexA DNA binding domain BB2272 PF00155 Aminotransferase class I and II BB2273 PF12344 Ultra-violet resistance protein B BB2273 PF04851 Type III restriction enzyme, res subunit BB2273 PF17757 UvrB interaction domain BB2273 PF00271 Helicase conserved C-terminal domain BB2273 PF02151 UvrB/uvrC motif BB2274 PF01451 Low molecular weight phosphotyrosine protein phosphatase BB2275 PF02082 Transcriptional regulator BB2276 PF00266 Aminotransferase class-V BB2277 PF01592 NifU-like N terminal domain BB2278 PF01521 Iron-sulphur cluster biosynthesis BB2279 PF07743 HSCB C-terminal oligomerisation domain BB2280 PF00012 Hsp70 protein BB2281 PF00111 2Fe-2S iron-sulfur cluster binding domain BB2282 PF04384 Iron-sulphur cluster assembly BB2283 PF02142 MGS-like domain BB2284 PF00378 Enoyl-CoA hydratase/isomerase BB2285 PF12399 Branched-chain amino acid ATP-binding cassette transporter BB2285 PF00005 ABC transporter BB2287 PF02653 Branched-chain amino acid transport system / permease component BB2287 PF11862 Domain of unknown function (DUF3382) BB2289 PF00005 ABC transporter BB2290 PF00501 AMP-binding enzyme BB2291 PF00440 Bacterial regulatory proteins, tetR family BB2291 PF17932 Tetracyclin repressor-like, C-terminal domain BB2293 PF01336 OB-fold nucleic acid binding domain BB2293 PF00152 tRNA synthetases class II (D, K and N) BB2294 PF00106 short chain dehydrogenase BB2295 PF03462 PCRF domain BB2295 PF00472 RF-1 domain BB2296 PF01368 DHH family BB2296 PF17768 RecJ OB domain BB2296 PF02272 DHHA1 domain BB2298 PF12704 MacB-like periplasmic core domain BB2298 PF02687 FtsX-like permease family BB2299 PF00005 ABC transporter BB2300 PF01026 TatD related DNase BB2304 PF03772 Competence protein BB2304 PF13567 Domain of unknown function (DUF4131) BB2304 PF00753 Metallo-beta-lactamase superfamily BB2306 PF02811 PHP domain BB2307 PF01272 Transcription elongation factor, GreA/GreB, C-term BB2307 PF03449 Transcription elongation factor, N-terminal BB2308 PF03480 Bacterial extracellular solute-binding protein, family 7 BB2309 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BB2310 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component BB2311 PF02769 AIR synthase related protein, C-terminal domain BB2311 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal BB2311 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain BB2312 PF05860 haemagglutination activity domain BB2312 PF13018 Extended Signal Peptide of Type V secretion system BB2312 PF05594 Haemagluttinin repeat BB2312 PF13332 Hemagglutinin repeat BB2313 PF01546 Peptidase family M20/M25/M40 BB2316 PF03401 Tripartite tricarboxylate transporter family receptor BB2318 PF01925 Sulfite exporter TauE/SafE BB2319 PF00578 AhpC/TSA family BB2320 PF13098 Thioredoxin-like domain BB2322 PF00533 BRCA1 C Terminus (BRCT) domain BB2322 PF03120 NAD-dependent DNA ligase OB-fold domain BB2322 PF12826 Helix-hairpin-helix motif BB2322 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BB2322 PF01653 NAD-dependent DNA ligase adenylation domain BB2323 PF00196 Bacterial regulatory proteins, luxR family BB2323 PF00072 Response regulator receiver domain BB2326 PF00571 CBS domain BB2326 PF00478 IMP dehydrogenase / GMP reductase domain BB2327 PF00958 GMP synthase C terminal domain BB2327 PF00117 Glutamine amidotransferase class-I BB2327 PF02540 NAD synthase BB2330 PF07690 Major Facilitator Superfamily BB2331 PF07690 Major Facilitator Superfamily BB2332 PF01638 HxlR-like helix-turn-helix BB2333 PF03595 Voltage-dependent anion channel BB2334 PF07690 Major Facilitator Superfamily BB2337 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB2337 PF03466 LysR substrate binding domain BB2339 PF01740 STAS domain BB2339 PF00916 Sulfate permease family BB2340 PF10996 Beta-Casp domain BB2340 PF00753 Metallo-beta-lactamase superfamily BB2340 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain BB2342 PF03401 Tripartite tricarboxylate transporter family receptor BB2343 PF04909 Amidohydrolase BB2344 PF03401 Tripartite tricarboxylate transporter family receptor BB2345 PF03401 Tripartite tricarboxylate transporter family receptor BB2346 PF02515 CoA-transferase family III BB2349 PF04909 Amidohydrolase BB2350 PF03972 MmgE/PrpD family BB2351 PF00171 Aldehyde dehydrogenase family BB2352 PF03466 LysR substrate binding domain BB2352 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB2354 PF03401 Tripartite tricarboxylate transporter family receptor BB2358 PF01810 LysE type translocator BB2360 PF07687 Peptidase dimerisation domain BB2360 PF01546 Peptidase family M20/M25/M40 BB2361 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BB2362 PF00528 Binding-protein-dependent transport system inner membrane component BB2364 PF00005 ABC transporter BB2364 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BB2365 PF00356 Bacterial regulatory proteins, lacI family BB2367 PF09278 MerR, DNA binding BB2367 PF00376 MerR family regulatory protein BB2369 PF02515 CoA-transferase family III BB2371 PF03401 Tripartite tricarboxylate transporter family receptor BB2372 PF00392 Bacterial regulatory proteins, gntR family BB2372 PF07702 UTRA domain BB2373 PF03401 Tripartite tricarboxylate transporter family receptor BB2374 PF02615 Malate/L-lactate dehydrogenase BB2375 PF01266 FAD dependent oxidoreductase BB2376 PF14748 Pyrroline-5-carboxylate reductase dimerisation BB2376 PF03807 NADP oxidoreductase coenzyme F420-dependent BB2377 PF00392 Bacterial regulatory proteins, gntR family BB2377 PF07729 FCD domain BB2382 PF00005 ABC transporter BB2383 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BB2386 PF00248 Aldo/keto reductase family BB2387 PF02954 Bacterial regulatory protein, Fis family BB2387 PF01590 GAF domain BB2387 PF00158 Sigma-54 interaction domain BB2388 PF00171 Aldehyde dehydrogenase family BB2390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB2390 PF03466 LysR substrate binding domain BB2391 PF04286 Protein of unknown function (DUF445) BB2392 PF03466 LysR substrate binding domain BB2392 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB2393 PF02567 Phenazine biosynthesis-like protein BB2394 PF07237 Protein of unknown function (DUF1428) BB2395 PF12833 Helix-turn-helix domain BB2395 PF02805 Metal binding domain of Ada BB2398 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BB2398 PF03625 Domain of unknown function DUF302 BB2402 PF00916 Sulfate permease family BB2402 PF01740 STAS domain BB2405 PF02535 ZIP Zinc transporter BB2407 PF00005 ABC transporter BB2407 PF00664 ABC transporter transmembrane region BB2408 PF00583 Acetyltransferase (GNAT) family BB2411 PF07690 Major Facilitator Superfamily BB2415 PF06719 AraC-type transcriptional regulator N-terminus BB2415 PF12833 Helix-turn-helix domain BB2417 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BB2418 PF00111 2Fe-2S iron-sulfur cluster binding domain BB2418 PF01799 [2Fe-2S] binding domain BB2420 PF03466 LysR substrate binding domain BB2420 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB2422 PF00793 DAHP synthetase I family BB2423 PF01810 LysE type translocator BB2424 PF07992 Pyridine nucleotide-disulphide oxidoreductase BB2424 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BB2427 PF00043 Glutathione S-transferase, C-terminal domain BB2427 PF02798 Glutathione S-transferase, N-terminal domain BB2428 PF00155 Aminotransferase class I and II BB2428 PF00392 Bacterial regulatory proteins, gntR family BB2430 PF00892 EamA-like transporter family BB2432 PF01546 Peptidase family M20/M25/M40 BB2432 PF07687 Peptidase dimerisation domain BB2433 PF01554 MatE BB2434 PF00821 Phosphoenolpyruvate carboxykinase C-terminal P-loop domain BB2434 PF17297 Phosphoenolpyruvate carboxykinase N-terminal domain BB2437 PF05853 beta-keto acid cleavage enzyme BB2438 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BB2438 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain BB2438 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BB2439 PF03466 LysR substrate binding domain BB2439 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB2440 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BB2442 PF03480 Bacterial extracellular solute-binding protein, family 7 BB2443 PF01370 NAD dependent epimerase/dehydratase family BB2444 PF01261 Xylose isomerase-like TIM barrel BB2445 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BB2445 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BB2446 PF00920 Dehydratase family BB2452 PF00920 Dehydratase family BB2453 PF03401 Tripartite tricarboxylate transporter family receptor BB2454 PF00732 GMC oxidoreductase BB2454 PF05199 GMC oxidoreductase BB2455 PF09084 NMT1/THI5 like BB2456 PF00005 ABC transporter BB2457 PF00528 Binding-protein-dependent transport system inner membrane component BB2458 PF00392 Bacterial regulatory proteins, gntR family BB2458 PF07702 UTRA domain BB2460 PF03466 LysR substrate binding domain BB2460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB2462 PF01435 Peptidase family M48 BB2464 PF07690 Major Facilitator Superfamily BB2465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB2465 PF03466 LysR substrate binding domain BB2466 PF16347 Domain of unknown function (DUF4976) BB2466 PF00884 Sulfatase BB2467 PF03401 Tripartite tricarboxylate transporter family receptor BB2469 PF01970 Tripartite tricarboxylate transporter TctA family BB2471 PF01850 PIN domain BB2478 PF04261 Dyp-type peroxidase family BB2479 PF04454 Encapsulating protein for peroxidase BB2480 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BB2482 PF03480 Bacterial extracellular solute-binding protein, family 7 BB2483 PF00857 Isochorismatase family BB2485 PF03401 Tripartite tricarboxylate transporter family receptor BB2486 PF01522 Polysaccharide deacetylase BB2488 PF01425 Amidase BB2492 PF01527 Transposase BB2499 PF01152 Bacterial-like globin BB2501 PF00005 ABC transporter BB2503 PF00497 Bacterial extracellular solute-binding proteins, family 3 BB2504 PF00403 Heavy-metal-associated domain BB2505 PF13411 MerR HTH family regulatory protein BB2507 PF00206 Lyase BB2507 PF14698 Argininosuccinate lyase C-terminal BB2508 PF00924 Mechanosensitive ion channel BB2509 PF02540 NAD synthase BB2509 PF00795 Carbon-nitrogen hydrolase BB2510 PF00543 Nitrogen regulatory protein P-II BB2512 PF01479 S4 domain BB2515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB2515 PF03466 LysR substrate binding domain BB2517 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BB2518 PF00528 Binding-protein-dependent transport system inner membrane component BB2520 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BB2520 PF00005 ABC transporter BB2521 PF01810 LysE type translocator BB2522 PF07152 YaeQ protein BB2523 PF07690 Major Facilitator Superfamily BB2524 PF04345 Chorismate lyase BB2525 PF01479 S4 domain BB2525 PF00849 RNA pseudouridylate synthase BB2526 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB2526 PF03466 LysR substrate binding domain BB2527 PF00529 HlyD membrane-fusion protein of T1SS BB2527 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BB2528 PF00873 AcrB/AcrD/AcrF family BB2529 PF02321 Outer membrane efflux protein BB2531 PF02630 SCO1/SenC BB2532 PF01432 Peptidase family M3 BB2533 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain BB2533 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain BB2534 PF00072 Response regulator receiver domain BB2534 PF00196 Bacterial regulatory proteins, luxR family BB2535 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BB2535 PF00989 PAS fold BB2535 PF00512 His Kinase A (phospho-acceptor) domain BB2536 PF17831 Pyruvate dehydrogenase E1 component middle domain BB2536 PF00456 Transketolase, thiamine diphosphate binding domain BB2537 PF02817 e3 binding domain BB2537 PF00364 Biotin-requiring enzyme BB2537 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BB2538 PF07992 Pyridine nucleotide-disulphide oxidoreductase BB2538 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BB2539 PF00700 Bacterial flagellin C-terminal helical region BB2539 PF00669 Bacterial flagellin N-terminal helical region BB2540 PF04545 Sigma-70, region 4 BB2540 PF04542 Sigma-70 region 2 BB2540 PF04539 Sigma-70 region 3 BB2541 PF05247 Flagellar transcriptional activator (FlhD) BB2542 PF05280 Flagellar transcriptional activator (FlhC) BB2543 PF01618 MotA/TolQ/ExbB proton channel family BB2544 PF00691 OmpA family BB2544 PF13677 Membrane MotB of proton-channel complex MotA/MotB BB2545 PF00072 Response regulator receiver domain BB2546 PF01584 CheW-like domain BB2546 PF09078 CheY binding BB2546 PF01627 Hpt domain BB2546 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BB2546 PF02895 Signal transducing histidine kinase, homodimeric domain BB2547 PF01584 CheW-like domain BB2548 PF02203 Tar ligand binding domain homologue BB2548 PF00672 HAMP domain BB2548 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BB2549 PF01739 CheR methyltransferase, SAM binding domain BB2549 PF03705 CheR methyltransferase, all-alpha domain BB2550 PF01339 CheB methylesterase BB2550 PF00072 Response regulator receiver domain BB2551 PF00072 Response regulator receiver domain BB2552 PF04344 Chemotaxis phosphatase, CheZ BB2553 PF01312 FlhB HrpN YscU SpaS Family BB2554 PF00771 FHIPEP family BB2555 PF00448 SRP54-type protein, GTPase domain BB2557 PF04316 Anti-sigma-28 factor, FlgM BB2559 PF00460 Flagella basal body rod protein BB2560 PF00460 Flagella basal body rod protein BB2560 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BB2561 PF13861 FlgD Tudor-like domain BB2561 PF13860 FlgD Ig-like domain BB2561 PF03963 Flagellar hook capping protein - N-terminal region BB2562 PF07559 Flagellar basal body protein FlaE BB2562 PF00460 Flagella basal body rod protein BB2562 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BB2563 PF00460 Flagella basal body rod protein BB2563 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BB2564 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BB2564 PF00460 Flagella basal body rod protein BB2565 PF02107 Flagellar L-ring protein BB2566 PF02119 Flagellar P-ring protein BB2567 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase BB2567 PF10135 Rod binding protein BB2568 PF06429 Flagellar basal body rod FlgEFG protein C-terminal BB2568 PF00460 Flagella basal body rod protein BB2569 PF00669 Bacterial flagellin N-terminal helical region BB2570 PF00672 HAMP domain BB2570 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BB2570 PF02203 Tar ligand binding domain homologue BB2574 PF02203 Tar ligand binding domain homologue BB2574 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BB2574 PF00672 HAMP domain BB2575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BB2575 PF08447 PAS fold BB2576 PF01311 Bacterial export proteins, family 1 BB2577 PF01313 Bacterial export proteins, family 3 BB2578 PF00813 FliP family BB2579 PF04347 Flagellar biosynthesis protein, FliO BB2580 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BB2580 PF16973 Flagellar motor switch protein FliN N-terminal BB2581 PF02154 Flagellar motor switch protein FliM BB2581 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term BB2582 PF03748 Flagellar basal body-associated protein FliL BB2585 PF18269 T3SS EscN ATPase C-terminal domain BB2585 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BB2587 PF01706 FliG C-terminal domain BB2587 PF14842 FliG N-terminal domain BB2587 PF14841 FliG middle domain BB2588 PF01514 Secretory protein of YscJ/FliF family BB2588 PF08345 Flagellar M-ring protein C-terminal BB2589 PF02049 Flagellar hook-basal body complex protein FliE BB2591 PF01312 FlhB HrpN YscU SpaS Family BB2594 PF02561 Flagellar protein FliS BB2595 PF07196 Flagellin hook IN motif BB2595 PF07195 Flagellar hook-associated protein 2 C-terminus BB2595 PF02465 Flagellar hook-associated protein 2 N-terminus BB2597 PF02875 Mur ligase family, glutamate ligase domain BB2597 PF08245 Mur ligase middle domain BB2600 PF00156 Phosphoribosyl transferase domain BB2603 PF08335 GlnD PII-uridylyltransferase BB2603 PF01909 Nucleotidyltransferase domain BB2603 PF01966 HD domain BB2604 PF00557 Metallopeptidase family M24 BB2605 PF00318 Ribosomal protein S2 BB2606 PF00889 Elongation factor TS BB2607 PF00696 Amino acid kinase family BB2608 PF01765 Ribosome recycling factor BB2609 PF01255 Putative undecaprenyl diphosphate synthase BB2611 PF13288 DXP reductoisomerase C-terminal domain BB2611 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase BB2611 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain BB2612 PF02163 Peptidase family M50 BB2612 PF17820 PDZ domain BB2613 PF01103 Surface antigen BB2613 PF07244 Surface antigen variable number repeat BB2614 PF03938 Outer membrane protein (OmpH-like) BB2615 PF00132 Bacterial transferase hexapeptide (six repeats) BB2615 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD BB2616 PF07977 FabA-like domain BB2617 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 BB2617 PF00132 Bacterial transferase hexapeptide (six repeats) BB2618 PF02684 Lipid-A-disaccharide synthetase BB2619 PF01351 Ribonuclease HII BB2620 PF00588 SpoU rRNA Methylase family BB2620 PF08032 RNA 2'-O ribose methyltransferase substrate binding BB2621 PF03618 Kinase/pyrophosphorylase BB2622 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain BB2622 PF02896 PEP-utilising enzyme, TIM barrel domain BB2622 PF00391 PEP-utilising enzyme, mobile domain BB2623 PF00117 Glutamine amidotransferase class-I BB2623 PF00958 GMP synthase C terminal domain BB2625 PF16200 C-terminal region of band_7 BB2625 PF01145 SPFH domain / Band 7 family BB2626 PF08448 PAS fold BB2626 PF00990 Diguanylate cyclase, GGDEF domain BB2627 PF01668 SmpB protein BB2628 PF03364 Polyketide cyclase / dehydrase and lipid transport BB2629 PF03658 RnfH family Ubiquitin BB2630 PF02770 Acyl-CoA dehydrogenase, middle domain BB2630 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BB2630 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BB2631 PF00378 Enoyl-CoA hydratase/isomerase BB2632 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BB2632 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BB2635 PF01571 Aminomethyltransferase folate-binding domain BB2636 PF02618 YceG-like family BB2637 PF02223 Thymidylate kinase BB2638 PF12169 DNA polymerase III subunits gamma and tau domain III BB2639 PF01026 TatD related DNase BB2642 PF00497 Bacterial extracellular solute-binding proteins, family 3 BB2644 PF00005 ABC transporter BB2645 PF00491 Arginase family BB2646 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BB2646 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BB2647 PF00171 Aldehyde dehydrogenase family BB2648 PF01546 Peptidase family M20/M25/M40 BB2648 PF07687 Peptidase dimerisation domain BB2649 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BB2649 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BB2649 PF00205 Thiamine pyrophosphate enzyme, central domain BB2651 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BB2653 PF03480 Bacterial extracellular solute-binding protein, family 7 BB2653 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component BB2654 PF00392 Bacterial regulatory proteins, gntR family BB2654 PF07729 FCD domain BB2655 PF04343 Protein of unknown function, DUF488 BB2657 PF06826 Predicted Permease Membrane Region BB2657 PF02080 TrkA-C domain BB2658 PF00282 Pyridoxal-dependent decarboxylase conserved domain BB2660 PF03707 Bacterial signalling protein N terminal repeat BB2660 PF00990 Diguanylate cyclase, GGDEF domain BB2660 PF00563 EAL domain BB2661 PF08281 Sigma-70, region 4 BB2661 PF04542 Sigma-70 region 2 BB2663 PF03741 Integral membrane protein TerC family BB2664 PF03707 Bacterial signalling protein N terminal repeat BB2664 PF00990 Diguanylate cyclase, GGDEF domain BB2664 PF00563 EAL domain BB2668 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family BB2671 PF03741 Integral membrane protein TerC family BB2671 PF03471 Transporter associated domain BB2673 PF03401 Tripartite tricarboxylate transporter family receptor BB2674 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BB2674 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BB2675 PF03466 LysR substrate binding domain BB2675 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB2677 PF02016 LD-carboxypeptidase N-terminal domain BB2677 PF17676 LD-carboxypeptidase C-terminal domain BB2680 PF07690 Major Facilitator Superfamily BB2682 PF03466 LysR substrate binding domain BB2682 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB2683 PF13378 Enolase C-terminal domain-like BB2683 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BB2684 PF03401 Tripartite tricarboxylate transporter family receptor BB2687 PF02515 CoA-transferase family III BB2688 PF00364 Biotin-requiring enzyme BB2689 PF02785 Biotin carboxylase C-terminal domain BB2689 PF00289 Biotin carboxylase, N-terminal domain BB2689 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BB2690 PF01039 Carboxyl transferase domain BB2691 PF03401 Tripartite tricarboxylate transporter family receptor BB2693 PF01266 FAD dependent oxidoreductase BB2696 PF00528 Binding-protein-dependent transport system inner membrane component BB2697 PF00528 Binding-protein-dependent transport system inner membrane component BB2699 PF00005 ABC transporter BB2699 PF08402 TOBE domain BB2700 PF09339 IclR helix-turn-helix domain BB2700 PF01614 Bacterial transcriptional regulator BB2702 PF01738 Dienelactone hydrolase family BB2703 PF00392 Bacterial regulatory proteins, gntR family BB2703 PF07702 UTRA domain BB2704 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BB2707 PF00491 Arginase family BB2708 PF03401 Tripartite tricarboxylate transporter family receptor BB2709 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB2709 PF03466 LysR substrate binding domain BB2713 PF02653 Branched-chain amino acid transport system / permease component BB2714 PF00005 ABC transporter BB2715 PF01557 Fumarylacetoacetate (FAA) hydrolase family BB2717 PF07969 Amidohydrolase family BB2718 PF12697 Alpha/beta hydrolase family BB2723 PF03741 Integral membrane protein TerC family BB2725 PF03401 Tripartite tricarboxylate transporter family receptor BB2727 PF03781 Sulfatase-modifying factor enzyme 1 BB2728 PF07726 ATPase family associated with various cellular activities (AAA) BB2728 PF17863 AAA lid domain BB2736 PF00884 Sulfatase BB2740 PF00196 Bacterial regulatory proteins, luxR family BB2740 PF00072 Response regulator receiver domain BB2741 PF03797 Autotransporter beta-domain BB2741 PF12951 Passenger-associated-transport-repeat BB2741 PF00082 Subtilase family BB2742 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA BB2743 PF06296 RelE toxin of RelE / RelB toxin-antitoxin system BB2744 PF02798 Glutathione S-transferase, N-terminal domain BB2744 PF00043 Glutathione S-transferase, C-terminal domain BB2745 PF03466 LysR substrate binding domain BB2745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB2746 PF03401 Tripartite tricarboxylate transporter family receptor BB2747 PF16385 Domain of unknown function BB2747 PF00884 Sulfatase BB2749 PF00296 Luciferase-like monooxygenase BB2750 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BB2751 PF00296 Luciferase-like monooxygenase BB2752 PF03466 LysR substrate binding domain BB2752 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB2753 PF01494 FAD binding domain BB2755 PF13458 Periplasmic binding protein BB2756 PF02653 Branched-chain amino acid transport system / permease component BB2758 PF00005 ABC transporter BB2758 PF12399 Branched-chain amino acid ATP-binding cassette transporter BB2759 PF00005 ABC transporter BB2760 PF00440 Bacterial regulatory proteins, tetR family BB2761 PF01614 Bacterial transcriptional regulator BB2761 PF09339 IclR helix-turn-helix domain BB2762 PF02515 CoA-transferase family III BB2763 PF02803 Thiolase, C-terminal domain BB2763 PF00108 Thiolase, N-terminal domain BB2765 PF03401 Tripartite tricarboxylate transporter family receptor BB2767 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB2767 PF03466 LysR substrate binding domain BB2768 PF03401 Tripartite tricarboxylate transporter family receptor BB2769 PF02515 CoA-transferase family III BB2770 PF00378 Enoyl-CoA hydratase/isomerase BB2771 PF00378 Enoyl-CoA hydratase/isomerase BB2772 PF03401 Tripartite tricarboxylate transporter family receptor BB2773 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BB2773 PF00378 Enoyl-CoA hydratase/isomerase BB2773 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BB2774 PF02803 Thiolase, C-terminal domain BB2774 PF00108 Thiolase, N-terminal domain BB2775 PF00465 Iron-containing alcohol dehydrogenase BB2776 PF03061 Thioesterase superfamily BB2777 PF01266 FAD dependent oxidoreductase BB2778 PF01494 FAD binding domain BB2779 PF03401 Tripartite tricarboxylate transporter family receptor BB2780 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB2780 PF03466 LysR substrate binding domain BB2781 PF03358 NADPH-dependent FMN reductase BB2782 PF03960 ArsC family BB2785 PF07969 Amidohydrolase family BB2786 PF03401 Tripartite tricarboxylate transporter family receptor BB2788 PF03466 LysR substrate binding domain BB2788 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB2790 PF01590 GAF domain BB2790 PF00360 Phytochrome region BB2790 PF00990 Diguanylate cyclase, GGDEF domain BB2790 PF00563 EAL domain BB2791 PF00171 Aldehyde dehydrogenase family BB2791 PF00465 Iron-containing alcohol dehydrogenase BB2793 PF16200 C-terminal region of band_7 BB2793 PF01145 SPFH domain / Band 7 family BB2796 PF00528 Binding-protein-dependent transport system inner membrane component BB2800 PF04879 Molybdopterin oxidoreductase Fe4S4 domain BB2800 PF00384 Molybdopterin oxidoreductase BB2800 PF01568 Molydopterin dinucleotide binding domain BB2801 PF03892 Nitrate reductase cytochrome c-type subunit (NapB) BB2802 PF03264 NapC/NirT cytochrome c family, N-terminal region BB2803 PF00005 ABC transporter BB2804 PF03379 CcmB protein BB2805 PF01578 Cytochrome C assembly protein BB2807 PF03100 CcmE BB2808 PF01578 Cytochrome C assembly protein BB2808 PF16327 Cytochrome c-type biogenesis protein CcmF C-terminal BB2809 PF08534 Redoxin BB2810 PF03918 Cytochrome C biogenesis protein BB2813 PF01042 Endoribonuclease L-PSP BB2814 PF08546 Ketopantoate reductase PanE/ApbA C terminal BB2814 PF02558 Ketopantoate reductase PanE/ApbA BB2815 PF13378 Enolase C-terminal domain-like BB2816 PF03401 Tripartite tricarboxylate transporter family receptor BB2817 PF00330 Aconitase family (aconitate hydratase) BB2818 PF00694 Aconitase C-terminal domain BB2819 PF00356 Bacterial regulatory proteins, lacI family BB2820 PF03401 Tripartite tricarboxylate transporter family receptor BB2821 PF02515 CoA-transferase family III BB2823 PF03401 Tripartite tricarboxylate transporter family receptor BB2825 PF00392 Bacterial regulatory proteins, gntR family BB2825 PF07729 FCD domain BB2826 PF03328 HpcH/HpaI aldolase/citrate lyase family BB2828 PF03466 LysR substrate binding domain BB2828 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB2830 PF16168 Adhesin of bacterial autotransporter system, probable stalk BB2830 PF13018 Extended Signal Peptide of Type V secretion system BB2830 PF03797 Autotransporter beta-domain BB2831 PF04954 Siderophore-interacting protein BB2831 PF08021 Siderophore-interacting FAD-binding domain BB2832 PF03551 Transcriptional regulator PadR-like family BB2834 PF03372 Endonuclease/Exonuclease/phosphatase family BB2835 PF13091 PLD-like domain BB2836 PF03706 Lysylphosphatidylglycerol synthase TM region BB2843 PF05957 Bacterial protein of unknown function (DUF883) BB2844 PF02735 Ku70/Ku80 beta-barrel domain BB2845 PF13298 DNA polymerase Ligase (LigD) BB2845 PF01068 ATP dependent DNA ligase domain BB2845 PF04679 ATP dependent DNA ligase C terminal region BB2856 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BB2856 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BB2856 PF00205 Thiamine pyrophosphate enzyme, central domain BB2857 PF00158 Sigma-54 interaction domain BB2857 PF00072 Response regulator receiver domain BB2857 PF02954 Bacterial regulatory protein, Fis family BB2858 PF02954 Bacterial regulatory protein, Fis family BB2858 PF00158 Sigma-54 interaction domain BB2858 PF00072 Response regulator receiver domain BB2859 PF04552 Sigma-54, DNA binding domain BB2859 PF04963 Sigma-54 factor, core binding domain BB2859 PF00309 Sigma-54 factor, Activator interacting domain (AID) BB2861 PF00534 Glycosyl transferases group 1 BB2861 PF08323 Starch synthase catalytic domain BB2862 PF00128 Alpha amylase, catalytic domain BB2862 PF11896 Domain of unknown function (DUF3416) BB2863 PF16657 Maltogenic Amylase, C-terminal domain BB2863 PF00128 Alpha amylase, catalytic domain BB2864 PF02806 Alpha amylase, C-terminal all-beta domain BB2864 PF00128 Alpha amylase, catalytic domain BB2864 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BB2865 PF00128 Alpha amylase, catalytic domain BB2865 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BB2866 PF11941 Domain of unknown function (DUF3459) BB2866 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) BB2866 PF00128 Alpha amylase, catalytic domain BB2867 PF02446 4-alpha-glucanotransferase BB2868 PF00128 Alpha amylase, catalytic domain BB2869 PF13188 PAS domain BB2869 PF08448 PAS fold BB2869 PF00512 His Kinase A (phospho-acceptor) domain BB2869 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BB2869 PF00072 Response regulator receiver domain BB2870 PF08543 Phosphomethylpyrimidine kinase BB2871 PF01168 Alanine racemase, N-terminal domain BB2872 PF00392 Bacterial regulatory proteins, gntR family BB2872 PF00155 Aminotransferase class I and II BB2875 PF00582 Universal stress protein family BB2876 PF00248 Aldo/keto reductase family BB2878 PF16485 Protealysin propeptide BB2878 PF01447 Thermolysin metallopeptidase, catalytic domain BB2878 PF02868 Thermolysin metallopeptidase, alpha-helical domain BB2879 PF07681 DoxX BB2881 PF00578 AhpC/TSA family BB2882 PF03960 ArsC family BB2883 PF02515 CoA-transferase family III BB2887 PF00255 Glutathione peroxidase BB2888 PF00043 Glutathione S-transferase, C-terminal domain BB2888 PF02798 Glutathione S-transferase, N-terminal domain BB2891 PF10437 Bacterial lipoate protein ligase C-terminus BB2891 PF03099 Biotin/lipoate A/B protein ligase family BB2894 PF02666 Phosphatidylserine decarboxylase BB2895 PF01070 FMN-dependent dehydrogenase BB2896 PF03180 NLPA lipoprotein BB2899 PF04241 Protein of unknown function (DUF423) BB2900 PF00892 EamA-like transporter family BB2902 PF07995 Glucose / Sorbosone dehydrogenase BB2903 PF02798 Glutathione S-transferase, N-terminal domain BB2903 PF00043 Glutathione S-transferase, C-terminal domain BB2904 PF01177 Asp/Glu/Hydantoin racemase BB2905 PF00005 ABC transporter BB2906 PF12399 Branched-chain amino acid ATP-binding cassette transporter BB2906 PF00005 ABC transporter BB2907 PF11862 Domain of unknown function (DUF3382) BB2907 PF02653 Branched-chain amino acid transport system / permease component BB2908 PF02653 Branched-chain amino acid transport system / permease component BB2909 PF13458 Periplasmic binding protein BB2910 PF02592 Putative vitamin uptake transporter BB2911 PF03807 NADP oxidoreductase coenzyme F420-dependent BB2911 PF14748 Pyrroline-5-carboxylate reductase dimerisation BB2912 PF13416 Bacterial extracellular solute-binding protein BB2913 PF00528 Binding-protein-dependent transport system inner membrane component BB2914 PF00528 Binding-protein-dependent transport system inner membrane component BB2915 PF17912 MalK OB fold domain BB2915 PF00005 ABC transporter BB2916 PF13458 Periplasmic binding protein BB2918 PF00550 Phosphopantetheine attachment site BB2918 PF08240 Alcohol dehydrogenase GroES-like domain BB2918 PF14765 Polyketide synthase dehydratase BB2918 PF00109 Beta-ketoacyl synthase, N-terminal domain BB2918 PF08659 KR domain BB2918 PF02801 Beta-ketoacyl synthase, C-terminal domain BB2918 PF16197 Ketoacyl-synthetase C-terminal extension BB2918 PF00698 Acyl transferase domain BB2919 PF00155 Aminotransferase class I and II BB2921 PF00106 short chain dehydrogenase BB2922 PF05159 Capsule polysaccharide biosynthesis protein BB2923 PF05159 Capsule polysaccharide biosynthesis protein BB2924 PF01370 NAD dependent epimerase/dehydratase family BB2925 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BB2925 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BB2925 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BB2926 PF02563 Polysaccharide biosynthesis/export protein BB2928 PF00534 Glycosyl transferases group 1 BB2930 PF00005 ABC transporter BB2932 PF00535 Glycosyl transferase family 2 BB2935 PF00210 Ferritin-like domain BB2936 PF00171 Aldehyde dehydrogenase family BB2937 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB2937 PF03466 LysR substrate binding domain BB2938 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB2938 PF03466 LysR substrate binding domain BB2939 PF17191 RecG wedge domain BB2939 PF00270 DEAD/DEAH box helicase BB2939 PF00271 Helicase conserved C-terminal domain BB2940 PF01042 Endoribonuclease L-PSP BB2941 PF03212 Pertactin BB2941 PF03797 Autotransporter beta-domain BB2942 PF00248 Aldo/keto reductase family BB2943 PF07690 Major Facilitator Superfamily BB2944 PF03466 LysR substrate binding domain BB2944 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB2945 PF00175 Oxidoreductase NAD-binding domain BB2945 PF00970 Oxidoreductase FAD-binding domain BB2947 PF00528 Binding-protein-dependent transport system inner membrane component BB2948 PF00005 ABC transporter BB2948 PF08402 TOBE domain BB2949 PF02678 Pirin BB2949 PF05726 Pirin C-terminal cupin domain BB2950 PF17954 Quercetinase C-terminal cupin domain BB2950 PF02678 Pirin BB2951 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB2951 PF03466 LysR substrate binding domain BB2952 PF00158 Sigma-54 interaction domain BB2952 PF02954 Bacterial regulatory protein, Fis family BB2952 PF00072 Response regulator receiver domain BB2953 PF00989 PAS fold BB2953 PF00512 His Kinase A (phospho-acceptor) domain BB2953 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BB2955 PF06969 HemN C-terminal domain BB2955 PF04055 Radical SAM superfamily BB2956 PF01725 Ham1 family BB2957 PF00563 EAL domain BB2957 PF08448 PAS fold BB2957 PF00990 Diguanylate cyclase, GGDEF domain BB2958 PF00672 HAMP domain BB2958 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BB2958 PF02203 Tar ligand binding domain homologue BB2959 PF03466 LysR substrate binding domain BB2959 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB2961 PF01138 3' exoribonuclease family, domain 1 BB2961 PF03725 3' exoribonuclease family, domain 2 BB2962 PF03755 YicC-like family, N-terminal region BB2962 PF08340 Domain of unknown function (DUF1732) BB2966 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus BB2966 PF01048 Phosphorylase superfamily BB2967 PF00877 NlpC/P60 family BB2969 PF00034 Cytochrome c BB2970 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BB2971 PF00625 Guanylate kinase BB2972 PF01192 RNA polymerase Rpb6 BB2973 PF02824 TGS domain BB2973 PF04607 Region found in RelA / SpoT proteins BB2973 PF13291 ACT domain BB2974 PF00005 ABC transporter BB2975 PF00528 Binding-protein-dependent transport system inner membrane component BB2976 PF00497 Bacterial extracellular solute-binding proteins, family 3 BB2978 PF05378 Hydantoinase/oxoprolinase N-terminal region BB2978 PF01968 Hydantoinase/oxoprolinase BB2980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB2980 PF03466 LysR substrate binding domain BB2984 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BB2985 PF03480 Bacterial extracellular solute-binding protein, family 7 BB2987 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BB2988 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB BB2988 PF17287 POTRA domain BB2988 PF08479 POTRA domain, ShlB-type BB2989 PF00419 Fimbrial protein BB2990 PF00577 Outer membrane usher protein BB2990 PF13953 PapC C-terminal domain BB2990 PF13954 PapC N-terminal domain BB2991 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain BB2991 PF02753 Pili assembly chaperone PapD, C-terminal domain BB2992 PF16970 Type-1 fimbrial protein, A BB2993 PF05860 haemagglutination activity domain BB2993 PF13332 Hemagglutinin repeat BB2993 PF13018 Extended Signal Peptide of Type V secretion system BB2993 PF05594 Haemagluttinin repeat BB2994 PF00072 Response regulator receiver domain BB2994 PF00196 Bacterial regulatory proteins, luxR family BB2995 PF00497 Bacterial extracellular solute-binding proteins, family 3 BB2995 PF01627 Hpt domain BB2995 PF00989 PAS fold BB2995 PF00072 Response regulator receiver domain BB2995 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BB2995 PF00512 His Kinase A (phospho-acceptor) domain BB2997 PF07286 Protein of unknown function (DUF1445) BB2998 PF01425 Amidase BB3000 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BB3003 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB3003 PF03466 LysR substrate binding domain BB3005 PF00005 ABC transporter BB3006 PF13472 GDSL-like Lipase/Acylhydrolase family BB3007 PF13145 PPIC-type PPIASE domain BB3008 PF03009 Glycerophosphoryl diester phosphodiesterase family BB3009 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ BB3010 PF07992 Pyridine nucleotide-disulphide oxidoreductase BB3010 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BB3011 PF00462 Glutaredoxin BB3011 PF08534 Redoxin BB3013 PF09278 MerR, DNA binding BB3013 PF00376 MerR family regulatory protein BB3014 PF05958 tRNA (Uracil-5-)-methyltransferase BB3018 PF01551 Peptidase family M23 BB3018 PF01476 LysM domain BB3020 PF01975 Survival protein SurE BB3021 PF02660 Glycerol-3-phosphate acyltransferase BB3022 PF00814 Glycoprotease family BB3023 PF00860 Permease family BB3024 PF00296 Luciferase-like monooxygenase BB3025 PF00085 Thioredoxin BB3026 PF01205 Uncharacterized protein family UPF0029 BB3030 PF00005 ABC transporter BB3031 PF12848 ABC transporter BB3031 PF00005 ABC transporter BB3032 PF03480 Bacterial extracellular solute-binding protein, family 7 BB3034 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BB3035 PF00378 Enoyl-CoA hydratase/isomerase BB3036 PF02016 LD-carboxypeptidase N-terminal domain BB3036 PF17676 LD-carboxypeptidase C-terminal domain BB3037 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BB3041 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) BB3042 PF01899 Na+/H+ ion antiporter subunit BB3043 PF00361 Proton-conducting membrane transporter BB3044 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BB3045 PF00361 Proton-conducting membrane transporter BB3045 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BB3045 PF13244 Domain of unknown function (DUF4040) BB3045 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter BB3046 PF03401 Tripartite tricarboxylate transporter family receptor BB3048 PF12320 Type 5 capsule protein repressor C-terminal domain BB3048 PF00149 Calcineurin-like phosphoesterase BB3049 PF01266 FAD dependent oxidoreductase BB3050 PF01037 Lrp/AsnC ligand binding domain BB3055 PF00528 Binding-protein-dependent transport system inner membrane component BB3056 PF00528 Binding-protein-dependent transport system inner membrane component BB3057 PF00005 ABC transporter BB3057 PF17912 MalK OB fold domain BB3058 PF17912 MalK OB fold domain BB3058 PF00005 ABC transporter BB3059 PF00455 DeoR C terminal sensor domain BB3059 PF08220 DeoR-like helix-turn-helix domain BB3060 PF01266 FAD dependent oxidoreductase BB3060 PF16901 C-terminal domain of alpha-glycerophosphate oxidase BB3062 PF00106 short chain dehydrogenase BB3063 PF03401 Tripartite tricarboxylate transporter family receptor BB3064 PF14537 Cytochrome c3 BB3064 PF00890 FAD binding domain BB3069 PF03401 Tripartite tricarboxylate transporter family receptor BB3070 PF00701 Dihydrodipicolinate synthetase family BB3074 PF00472 RF-1 domain BB3076 PF01242 6-pyruvoyl tetrahydropterin synthase BB3077 PF03480 Bacterial extracellular solute-binding protein, family 7 BB3078 PF00596 Class II Aldolase and Adducin N-terminal domain BB3083 PF00529 HlyD membrane-fusion protein of T1SS BB3083 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BB3084 PF02321 Outer membrane efflux protein BB3085 PF02230 Phospholipase/Carboxylesterase BB3088 PF07733 Bacterial DNA polymerase III alpha NTPase domain BB3088 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BB3088 PF14579 Helix-hairpin-helix motif BB3088 PF02811 PHP domain BB3089 PF01266 FAD dependent oxidoreductase BB3090 PF02082 Transcriptional regulator BB3091 PF00042 Globin BB3091 PF00970 Oxidoreductase FAD-binding domain BB3091 PF00175 Oxidoreductase NAD-binding domain BB3093 PF11799 impB/mucB/samB family C-terminal domain BB3093 PF11798 IMS family HHH motif BB3093 PF00817 impB/mucB/samB family BB3096 PF00326 Prolyl oligopeptidase family BB3097 PF00905 Penicillin binding protein transpeptidase domain BB3097 PF17092 Penicillin-binding protein OB-like domain BB3097 PF00912 Transglycosylase BB3098 PF00149 Calcineurin-like phosphoesterase BB3101 PF00248 Aldo/keto reductase family BB3102 PF00248 Aldo/keto reductase family BB3103 PF00005 ABC transporter BB3103 PF00664 ABC transporter transmembrane region BB3110 PF03797 Autotransporter beta-domain BB3110 PF03212 Pertactin BB3111 PF03797 Autotransporter beta-domain BB3111 PF03212 Pertactin BB3114 PF08448 PAS fold BB3114 PF00990 Diguanylate cyclase, GGDEF domain BB3114 PF08447 PAS fold BB3114 PF05231 MASE1 BB3114 PF13426 PAS domain BB3114 PF00563 EAL domain BB3115 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain BB3115 PF08447 PAS fold BB3116 PF12792 CSS motif domain associated with EAL BB3116 PF00563 EAL domain BB3117 PF01588 Putative tRNA binding domain BB3120 PF00324 Amino acid permease BB3123 PF03401 Tripartite tricarboxylate transporter family receptor BB3124 PF00682 HMGL-like BB3125 PF02515 CoA-transferase family III BB3126 PF02954 Bacterial regulatory protein, Fis family BB3126 PF00158 Sigma-54 interaction domain BB3126 PF06506 Propionate catabolism activator BB3127 PF01914 MarC family integral membrane protein BB3128 PF12792 CSS motif domain associated with EAL BB3128 PF00563 EAL domain BB3131 PF02770 Acyl-CoA dehydrogenase, middle domain BB3131 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BB3131 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BB3132 PF02515 CoA-transferase family III BB3133 PF00171 Aldehyde dehydrogenase family BB3134 PF00205 Thiamine pyrophosphate enzyme, central domain BB3134 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BB3134 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BB3135 PF03401 Tripartite tricarboxylate transporter family receptor BB3136 PF03401 Tripartite tricarboxylate transporter family receptor BB3137 PF03466 LysR substrate binding domain BB3137 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB3138 PF12228 Protein of unknown function (DUF3604) BB3140 PF00108 Thiolase, N-terminal domain BB3140 PF02803 Thiolase, C-terminal domain BB3141 PF00501 AMP-binding enzyme BB3141 PF14535 AMP-binding enzyme C-terminal domain BB3142 PF07859 alpha/beta hydrolase fold BB3143 PF02515 CoA-transferase family III BB3144 PF00111 2Fe-2S iron-sulfur cluster binding domain BB3146 PF00378 Enoyl-CoA hydratase/isomerase BB3147 PF00866 Ring hydroxylating beta subunit BB3148 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BB3148 PF00355 Rieske [2Fe-2S] domain BB3149 PF13458 Periplasmic binding protein BB3150 PF02653 Branched-chain amino acid transport system / permease component BB3151 PF11862 Domain of unknown function (DUF3382) BB3151 PF02653 Branched-chain amino acid transport system / permease component BB3152 PF12399 Branched-chain amino acid ATP-binding cassette transporter BB3152 PF00005 ABC transporter BB3153 PF00005 ABC transporter BB3155 PF07992 Pyridine nucleotide-disulphide oxidoreductase BB3155 PF14759 Reductase C-terminal BB3160 PF09907 HigB_toxin, RelE-like toxic component of a toxin-antitoxin system BB3161 PF03979 Sigma-70 factor, region 1.1 BB3161 PF04546 Sigma-70, non-essential region BB3161 PF04542 Sigma-70 region 2 BB3161 PF04539 Sigma-70 region 3 BB3161 PF00140 Sigma-70 factor, region 1.2 BB3161 PF04545 Sigma-70, region 4 BB3162 PF08278 DNA primase DnaG DnaB-binding BB3162 PF08275 DNA primase catalytic core, N-terminal domain BB3162 PF10410 DnaB-helicase binding domain of primase BB3162 PF01807 CHC2 zinc finger BB3163 PF01165 Ribosomal protein S21 BB3165 PF00709 Adenylosuccinate synthetase BB3166 PF13393 Histidyl-tRNA synthetase BB3167 PF01145 SPFH domain / Band 7 family BB3168 PF01145 SPFH domain / Band 7 family BB3168 PF12221 Bacterial membrane protein N terminal BB3169 PF16360 GTP-binding GTPase Middle Region BB3169 PF13167 GTP-binding GTPase N-terminal BB3169 PF01926 50S ribosome-binding GTPase BB3170 PF17209 Hfq protein BB3171 PF00155 Aminotransferase class I and II BB3172 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal BB3172 PF01926 50S ribosome-binding GTPase BB3173 PF13360 PQQ-like domain BB3174 PF09976 Tetratricopeptide repeat-like domain BB3175 PF03129 Anticodon binding domain BB3175 PF13393 Histidyl-tRNA synthetase BB3176 PF04551 GcpE protein BB3178 PF04055 Radical SAM superfamily BB3179 PF00334 Nucleoside diphosphate kinase BB3180 PF00133 tRNA synthetases class I (I, L, M and V) BB3180 PF08264 Anticodon-binding domain of tRNA BB3180 PF10458 Valyl tRNA synthetase tRNA binding arm BB3182 PF00486 Transcriptional regulatory protein, C terminal BB3182 PF00072 Response regulator receiver domain BB3183 PF00512 His Kinase A (phospho-acceptor) domain BB3183 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BB3183 PF08521 Two-component sensor kinase N-terminal BB3185 PF00266 Aminotransferase class-V BB3186 PF01746 tRNA (Guanine-1)-methyltransferase BB3187 PF01782 RimM N-terminal domain BB3188 PF00886 Ribosomal protein S16 BB3190 PF01206 Sulfurtransferase TusA BB3191 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain BB3191 PF02272 DHHA1 domain BB3191 PF01411 tRNA synthetases class II (A) BB3200 PF01425 Amidase BB3201 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BB3201 PF00005 ABC transporter BB3202 PF00528 Binding-protein-dependent transport system inner membrane component BB3203 PF00528 Binding-protein-dependent transport system inner membrane component BB3204 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BB3207 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB3207 PF03466 LysR substrate binding domain BB3208 PF13416 Bacterial extracellular solute-binding protein BB3209 PF01266 FAD dependent oxidoreductase BB3210 PF00970 Oxidoreductase FAD-binding domain BB3210 PF00175 Oxidoreductase NAD-binding domain BB3210 PF00111 2Fe-2S iron-sulfur cluster binding domain BB3211 PF02261 Aspartate decarboxylase BB3214 PF04166 Pyridoxal phosphate biosynthetic protein PdxA BB3215 PF07005 Sugar-binding N-terminal domain BB3215 PF17042 Nucleotide-binding C-terminal domain BB3216 PF03812 2-keto-3-deoxygluconate permease BB3217 PF05721 Phytanoyl-CoA dioxygenase (PhyH) BB3218 PF06339 Ectoine synthase BB3219 PF00202 Aminotransferase class-III BB3220 PF00583 Acetyltransferase (GNAT) family BB3221 PF12802 MarR family BB3223 PF00202 Aminotransferase class-III BB3224 PF16868 NMT1-like family BB3226 PF04235 Protein of unknown function (DUF418) BB3227 PF00521 DNA gyrase/topoisomerase IV, subunit A BB3229 PF00204 DNA gyrase B BB3229 PF00986 DNA gyrase B subunit, carboxyl terminus BB3229 PF01751 Toprim domain BB3229 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BB3230 PF00085 Thioredoxin BB3231 PF07497 Rho termination factor, RNA-binding domain BB3231 PF07498 Rho termination factor, N-terminal domain BB3231 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BB3233 PF03710 Glutamate-ammonia ligase adenylyltransferase BB3233 PF08335 GlnD PII-uridylyltransferase BB3234 PF02677 Epoxyqueuosine reductase QueH BB3235 PF03315 Serine dehydratase beta chain BB3235 PF03313 Serine dehydratase alpha chain BB3236 PF02690 Na+/Pi-cotransporter BB3237 PF01738 Dienelactone hydrolase family BB3239 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain BB3239 PF01367 5'-3' exonuclease, C-terminal SAM fold BB3239 PF00476 DNA polymerase family A BB3239 PF01612 3'-5' exonuclease BB3240 PF03641 Possible lysine decarboxylase BB3244 PF16198 tRNA pseudouridylate synthase B C-terminal domain BB3244 PF01509 TruB family pseudouridylate synthase (N terminal domain) BB3245 PF02033 Ribosome-binding factor A BB3246 PF00009 Elongation factor Tu GTP binding domain BB3246 PF11987 Translation-initiation factor 2 BB3246 PF08364 Bacterial translation initiation factor IF-2 associated region BB3246 PF04760 Translation initiation factor IF-2, N-terminal region BB3247 PF13184 NusA-like KH domain BB3247 PF08529 NusA N-terminal domain BB3248 PF02576 RimP N-terminal domain BB3248 PF17384 RimP C-terminal SH3 domain BB3249 PF01479 S4 domain BB3249 PF00849 RNA pseudouridylate synthase BB3250 PF04079 Segregation and condensation complex subunit ScpB BB3251 PF03466 LysR substrate binding domain BB3251 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB3252 PF00881 Nitroreductase family BB3253 PF02492 CobW/HypB/UreG, nucleotide-binding domain BB3253 PF07683 Cobalamin synthesis protein cobW C-terminal domain BB3255 PF02798 Glutathione S-transferase, N-terminal domain BB3255 PF14497 Glutathione S-transferase, C-terminal domain BB3256 PF02401 LytB protein BB3257 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase BB3258 PF04002 RadC-like JAB domain BB3259 PF04199 Putative cyclase BB3260 PF03301 Tryptophan 2,3-dioxygenase BB3261 PF01197 Ribosomal protein L31 BB3263 PF01554 MatE BB3266 PF18073 Rubredoxin metal binding domain BB3267 PF12450 von Willebrand factor BB3267 PF00092 von Willebrand factor type A domain BB3267 PF12034 Domain of unknown function (DUF3520) BB3268 PF04545 Sigma-70, region 4 BB3268 PF04542 Sigma-70 region 2 BB3271 PF01168 Alanine racemase, N-terminal domain BB3271 PF00842 Alanine racemase, C-terminal domain BB3274 PF01593 Flavin containing amine oxidoreductase BB3274 PF01593 Flavin containing amine oxidoreductase BB3275 PF02537 CrcB-like protein, Camphor Resistance (CrcB) BB3277 PF01061 ABC-2 type transporter BB3278 PF00005 ABC transporter BB3282 PF02424 ApbE family BB3283 PF00175 Oxidoreductase NAD-binding domain BB3283 PF00667 FAD binding domain BB3283 PF00258 Flavodoxin BB3285 PF07969 Amidohydrolase family BB3286 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB3286 PF03466 LysR substrate binding domain BB3288 PF09370 Phosphoenolpyruvate hydrolase-like BB3292 PF03797 Autotransporter beta-domain BB3292 PF03212 Pertactin BB3293 PF00004 ATPase family associated with various cellular activities (AAA) BB3293 PF10431 C-terminal, D2-small domain, of ClpB protein BB3293 PF02861 Clp amino terminal domain, pathogenicity island component BB3293 PF17871 AAA lid domain BB3293 PF07724 AAA domain (Cdc48 subfamily) BB3294 PF13545 Crp-like helix-turn-helix domain BB3294 PF00027 Cyclic nucleotide-binding domain BB3297 PF00293 NUDIX domain BB3298 PF12843 Putative quorum-sensing-regulated virulence factor BB3300 PF08281 Sigma-70, region 4 BB3300 PF04542 Sigma-70 region 2 BB3300 PF12680 SnoaL-like domain BB3301 PF02627 Carboxymuconolactone decarboxylase family BB3307 PF00497 Bacterial extracellular solute-binding proteins, family 3 BB3308 PF00528 Binding-protein-dependent transport system inner membrane component BB3309 PF00528 Binding-protein-dependent transport system inner membrane component BB3310 PF00005 ABC transporter BB3314 PF04325 Protein of unknown function (DUF465) BB3315 PF07690 Major Facilitator Superfamily BB3316 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB3316 PF03466 LysR substrate binding domain BB3317 PF00563 EAL domain BB3317 PF00990 Diguanylate cyclase, GGDEF domain BB3317 PF03707 Bacterial signalling protein N terminal repeat BB3318 PF01594 AI-2E family transporter BB3319 PF01061 ABC-2 type transporter BB3320 PF00005 ABC transporter BB3325 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase BB3325 PF12801 4Fe-4S binding domain BB3325 PF13746 4Fe-4S dicluster domain BB3326 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BB3326 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP BB3329 PF00115 Cytochrome C and Quinol oxidase polypeptide I BB3332 PF00202 Aminotransferase class-III BB3333 PF00155 Aminotransferase class I and II BB3335 PF13649 Methyltransferase domain BB3336 PF03788 LrgA family BB3337 PF04172 LrgB-like family BB3339 PF00463 Isocitrate lyase family BB3340 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term BB3340 PF14489 QueF-like protein BB3342 PF01066 CDP-alcohol phosphatidyltransferase BB3343 PF02151 UvrB/uvrC motif BB3343 PF01541 GIY-YIG catalytic domain BB3343 PF08459 UvrC Helix-hairpin-helix N-terminal BB3344 PF00933 Glycosyl hydrolase family 3 N terminal domain BB3345 PF01648 4'-phosphopantetheinyl transferase superfamily BB3346 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ BB3347 PF02321 Outer membrane efflux protein BB3348 PF00873 AcrB/AcrD/AcrF family BB3349 PF00529 HlyD membrane-fusion protein of T1SS BB3349 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BB3353 PF03459 TOBE domain BB3353 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB3354 PF00005 ABC transporter BB3357 PF00080 Copper/zinc superoxide dismutase (SODC) BB3358 PF03401 Tripartite tricarboxylate transporter family receptor BB3359 PF00501 AMP-binding enzyme BB3359 PF13193 AMP-binding enzyme C-terminal domain BB3360 PF00378 Enoyl-CoA hydratase/isomerase BB3362 PF00392 Bacterial regulatory proteins, gntR family BB3362 PF07729 FCD domain BB3364 PF02803 Thiolase, C-terminal domain BB3364 PF00108 Thiolase, N-terminal domain BB3365 PF01361 Tautomerase enzyme BB3366 PF00005 ABC transporter BB3366 PF00571 CBS domain BB3367 PF00528 Binding-protein-dependent transport system inner membrane component BB3370 PF07690 Major Facilitator Superfamily BB3371 PF00830 Ribosomal L28 family BB3372 PF00471 Ribosomal protein L33 BB3373 PF00916 Sulfate permease family BB3373 PF01740 STAS domain BB3375 PF01047 MarR family BB3376 PF07690 Major Facilitator Superfamily BB3377 PF13603 Leucyl-tRNA synthetase, Domain 2 BB3377 PF00133 tRNA synthetases class I (I, L, M and V) BB3377 PF08264 Anticodon-binding domain of tRNA BB3377 PF09334 tRNA synthetases class I (M) BB3380 PF00171 Aldehyde dehydrogenase family BB3382 PF01425 Amidase BB3383 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BB3383 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BB3386 PF10150 Ribonuclease E/G family BB3386 PF00575 S1 RNA binding domain BB3387 PF01842 ACT domain BB3387 PF00800 Prephenate dehydratase BB3389 PF07690 Major Facilitator Superfamily BB3390 PF00005 ABC transporter BB3390 PF00664 ABC transporter transmembrane region BB3391 PF01075 Glycosyltransferase family 9 (heptosyltransferase) BB3393 PF03692 Putative zinc- or iron-chelating domain BB3396 PF00884 Sulfatase BB3397 PF00534 Glycosyl transferases group 1 BB3397 PF13439 Glycosyltransferase Family 4 BB3398 PF00535 Glycosyl transferase family 2 BB3399 PF01522 Polysaccharide deacetylase BB3400 PF00534 Glycosyl transferases group 1 BB3400 PF13439 Glycosyltransferase Family 4 BB3401 PF01336 OB-fold nucleic acid binding domain BB3401 PF02811 PHP domain BB3401 PF14579 Helix-hairpin-helix motif BB3401 PF17657 Bacterial DNA polymerase III alpha subunit finger domain BB3401 PF07733 Bacterial DNA polymerase III alpha NTPase domain BB3403 PF00270 DEAD/DEAH box helicase BB3403 PF04408 Helicase associated domain (HA2) BB3403 PF11898 Domain of unknown function (DUF3418) BB3403 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold BB3403 PF00271 Helicase conserved C-terminal domain BB3405 PF04362 Bacterial Fe(2+) trafficking BB3406 PF05506 Domain of unknown function (DUF756) BB3406 PF04185 Phosphoesterase family BB3407 PF01895 PhoU domain BB3408 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) BB3409 PF18158 Adaptive response protein AidB N-terminal domain BB3409 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BB3409 PF02770 Acyl-CoA dehydrogenase, middle domain BB3410 PF02646 RmuC family BB3412 PF02245 Methylpurine-DNA glycosylase (MPG) BB3414 PF00528 Binding-protein-dependent transport system inner membrane component BB3415 PF00528 Binding-protein-dependent transport system inner membrane component BB3416 PF00005 ABC transporter BB3416 PF08402 TOBE domain BB3417 PF13416 Bacterial extracellular solute-binding protein BB3421 PF03480 Bacterial extracellular solute-binding protein, family 7 BB3423 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BB3424 PF16970 Type-1 fimbrial protein, A BB3425 PF16970 Type-1 fimbrial protein, A BB3426 PF16970 Type-1 fimbrial protein, A BB3428 PF03061 Thioesterase superfamily BB3429 PF00378 Enoyl-CoA hydratase/isomerase BB3430 PF00171 Aldehyde dehydrogenase family BB3431 PF00175 Oxidoreductase NAD-binding domain BB3431 PF00111 2Fe-2S iron-sulfur cluster binding domain BB3431 PF00970 Oxidoreductase FAD-binding domain BB3432 PF01883 Iron-sulfur cluster assembly protein BB3433 PF05138 Phenylacetic acid catabolic protein BB3434 PF06243 Phenylacetic acid degradation B BB3435 PF05138 Phenylacetic acid catabolic protein BB3436 PF07848 PaaX-like protein BB3436 PF08223 PaaX-like protein C-terminal domain BB3437 PF03853 YjeF-related protein N-terminus BB3438 PF00929 Exonuclease BB3439 PF01435 Peptidase family M48 BB3440 PF03193 RsgA GTPase BB3441 PF00248 Aldo/keto reductase family BB3442 PF00293 NUDIX domain BB3443 PF01245 Ribosomal protein L19 BB3446 PF04055 Radical SAM superfamily BB3447 PF00009 Elongation factor Tu GTP binding domain BB3448 PF01507 Phosphoadenosine phosphosulfate reductase family BB3449 PF01507 Phosphoadenosine phosphosulfate reductase family BB3450 PF00005 ABC transporter BB3450 PF17850 CysA C-terminal regulatory domain BB3450 PF12857 TOBE-like domain BB3451 PF00528 Binding-protein-dependent transport system inner membrane component BB3452 PF00528 Binding-protein-dependent transport system inner membrane component BB3454 PF10417 C-terminal domain of 1-Cys peroxiredoxin BB3454 PF00578 AhpC/TSA family BB3455 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BB3455 PF12806 Acetyl-CoA dehydrogenase C-terminal like BB3455 PF02770 Acyl-CoA dehydrogenase, middle domain BB3455 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BB3456 PF00766 Electron transfer flavoprotein FAD-binding domain BB3456 PF01012 Electron transfer flavoprotein domain BB3457 PF01012 Electron transfer flavoprotein domain BB3458 PF00850 Histone deacetylase domain BB3459 PF13406 Transglycosylase SLT domain BB3460 PF00291 Pyridoxal-phosphate dependent enzyme BB3461 PF10531 SLBB domain BB3462 PF01370 NAD dependent epimerase/dehydratase family BB3463 PF00294 pfkB family carbohydrate kinase BB3464 PF18073 Rubredoxin metal binding domain BB3466 PF00216 Bacterial DNA-binding protein BB3467 PF00575 S1 RNA binding domain BB3468 PF02224 Cytidylate kinase BB3469 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BB3470 PF02153 Prephenate dehydrogenase BB3471 PF01817 Chorismate mutase type II BB3471 PF00800 Prephenate dehydratase BB3471 PF01842 ACT domain BB3472 PF00266 Aminotransferase class-V BB3473 PF03989 DNA gyrase C-terminal domain, beta-propeller BB3473 PF00521 DNA gyrase/topoisomerase IV, subunit A BB3474 PF00691 OmpA family BB3476 PF13419 Haloacid dehalogenase-like hydrolase BB3477 PF07690 Major Facilitator Superfamily BB3478 PF02586 SOS response associated peptidase (SRAP) BB3490 PF06791 Prophage tail length tape measure protein BB3543 PF12167 Arm DNA-binding domain BB3543 PF00589 Phage integrase family BB3544 PF03466 LysR substrate binding domain BB3544 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB3545 PF03401 Tripartite tricarboxylate transporter family receptor BB3550 PF00501 AMP-binding enzyme BB3550 PF13193 AMP-binding enzyme C-terminal domain BB3552 PF03466 LysR substrate binding domain BB3552 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB3553 PF03401 Tripartite tricarboxylate transporter family receptor BB3555 PF01557 Fumarylacetoacetate (FAA) hydrolase family BB3558 PF04303 PrpF protein BB3560 PF00890 FAD binding domain BB3560 PF14537 Cytochrome c3 BB3561 PF00171 Aldehyde dehydrogenase family BB3562 PF03972 MmgE/PrpD family BB3563 PF00005 ABC transporter BB3564 PF00528 Binding-protein-dependent transport system inner membrane component BB3566 PF09084 NMT1/THI5 like BB3567 PF03466 LysR substrate binding domain BB3567 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB3569 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BB3569 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BB3571 PF05378 Hydantoinase/oxoprolinase N-terminal region BB3571 PF01968 Hydantoinase/oxoprolinase BB3573 PF03401 Tripartite tricarboxylate transporter family receptor BB3574 PF00881 Nitroreductase family BB3575 PF07690 Major Facilitator Superfamily BB3576 PF07694 5TMR of 5TMR-LYT BB3576 PF00990 Diguanylate cyclase, GGDEF domain BB3577 PF00582 Universal stress protein family BB3579 PF13406 Transglycosylase SLT domain BB3580 PF04305 Protein of unknown function (DUF455) BB3583 PF00664 ABC transporter transmembrane region BB3583 PF00005 ABC transporter BB3586 PF05532 CsbD-like BB3588 PF04972 BON domain BB3589 PF02567 Phenazine biosynthesis-like protein BB3591 PF03239 Iron permease FTR1 family BB3593 PF10634 Fe2+ transport protein BB3594 PF05233 PHB accumulation regulatory domain BB3594 PF07879 PHB/PHA accumulation regulator DNA-binding domain BB3595 PF00106 short chain dehydrogenase BB3596 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus BB3598 PF01479 S4 domain BB3598 PF00849 RNA pseudouridylate synthase BB3599 PF13525 Outer membrane lipoprotein BB3600 PF13307 Helicase C-terminal domain BB3600 PF04851 Type III restriction enzyme, res subunit BB3601 PF16921 Tex protein YqgF-like domain BB3601 PF17674 HHH domain BB3601 PF09371 Tex-like protein N-terminal domain BB3601 PF00575 S1 RNA binding domain BB3602 PF00579 tRNA synthetases class I (W and Y) BB3606 PF00589 Phage integrase family BB3616 PF07157 DNA circularisation protein N-terminus BB3630 PF04233 Phage Mu protein F like protein BB3632 PF03237 Terminase-like family BB3634 PF08461 Ribonuclease R winged-helix domain BB3653 PF00216 Bacterial DNA-binding protein BB3658 PF00593 TonB dependent receptor BB3658 PF07715 TonB-dependent Receptor Plug Domain BB3659 PF16220 Domain of unknown function (DUF4880) BB3659 PF04773 FecR protein BB3660 PF08281 Sigma-70, region 4 BB3660 PF04542 Sigma-70 region 2 BB3661 PF02668 Taurine catabolism dioxygenase TauD, TfdA family BB3663 PF03401 Tripartite tricarboxylate transporter family receptor BB3664 PF03466 LysR substrate binding domain BB3664 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB3666 PF03969 AFG1-like ATPase BB3667 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BB3667 PF07992 Pyridine nucleotide-disulphide oxidoreductase BB3668 PF00364 Biotin-requiring enzyme BB3668 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BB3668 PF02817 e3 binding domain BB3669 PF02779 Transketolase, pyrimidine binding domain BB3669 PF16870 2-oxoglutarate dehydrogenase C-terminal BB3669 PF16078 2-oxoglutarate dehydrogenase N-terminus BB3669 PF00676 Dehydrogenase E1 component BB3670 PF03169 OPT oligopeptide transporter protein BB3671 PF01037 Lrp/AsnC ligand binding domain BB3672 PF00456 Transketolase, thiamine diphosphate binding domain BB3672 PF17831 Pyruvate dehydrogenase E1 component middle domain BB3673 PF03949 Malic enzyme, NAD binding domain BB3673 PF01515 Phosphate acetyl/butaryl transferase BB3673 PF00390 Malic enzyme, N-terminal domain BB3674 PF16970 Type-1 fimbrial protein, A BB3677 PF00285 Citrate synthase, C-terminal domain BB3678 PF03937 Flavinator of succinate dehydrogenase BB3679 PF13085 2Fe-2S iron-sulfur cluster binding domain BB3680 PF00890 FAD binding domain BB3680 PF02910 Fumarate reductase flavoprotein C-term BB3681 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BB3682 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit BB3683 PF00392 Bacterial regulatory proteins, gntR family BB3683 PF07702 UTRA domain BB3684 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain BB3684 PF00056 lactate/malate dehydrogenase, NAD binding domain BB3686 PF00285 Citrate synthase, C-terminal domain BB3687 PF00330 Aconitase family (aconitate hydratase) BB3687 PF00694 Aconitase C-terminal domain BB3688 PF04303 PrpF protein BB3689 PF03972 MmgE/PrpD family BB3691 PF02926 THUMP domain BB3691 PF01170 Putative RNA methylase family UPF0020 BB3695 PF13193 AMP-binding enzyme C-terminal domain BB3695 PF00501 AMP-binding enzyme BB3695 PF16177 Acetyl-coenzyme A synthetase N-terminus BB3697 PF01430 Hsp33 protein BB3701 PF00211 Adenylate and Guanylate cyclase catalytic domain BB3702 PF04977 Septum formation initiator BB3703 PF03952 Enolase, N-terminal domain BB3703 PF00113 Enolase, C-terminal TIM barrel domain BB3705 PF00793 DAHP synthetase I family BB3706 PF06418 CTP synthase N-terminus BB3706 PF00117 Glutamine amidotransferase class-I BB3707 PF01321 Creatinase/Prolidase N-terminal domain BB3707 PF00557 Metallopeptidase family M24 BB3709 PF03576 Peptidase family S58 BB3710 PF00528 Binding-protein-dependent transport system inner membrane component BB3710 PF12911 N-terminal TM domain of oligopeptide transport permease C BB3711 PF00528 Binding-protein-dependent transport system inner membrane component BB3712 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BB3713 PF00005 ABC transporter BB3713 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BB3714 PF01112 Asparaginase BB3716 PF01144 Coenzyme A transferase BB3717 PF01144 Coenzyme A transferase BB3720 PF16363 GDP-mannose 4,6 dehydratase BB3723 PF01212 Beta-eliminating lyase BB3724 PF00892 EamA-like transporter family BB3725 PF00501 AMP-binding enzyme BB3725 PF16177 Acetyl-coenzyme A synthetase N-terminus BB3725 PF13193 AMP-binding enzyme C-terminal domain BB3727 PF03928 Haem-degrading BB3728 PF00501 AMP-binding enzyme BB3728 PF13193 AMP-binding enzyme C-terminal domain BB3728 PF16177 Acetyl-coenzyme A synthetase N-terminus BB3729 PF00877 NlpC/P60 family BB3731 PF03466 LysR substrate binding domain BB3731 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB3732 PF00171 Aldehyde dehydrogenase family BB3734 PF03466 LysR substrate binding domain BB3734 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB3736 PF00883 Cytosol aminopeptidase family, catalytic domain BB3736 PF02789 Cytosol aminopeptidase family, N-terminal domain BB3737 PF04364 DNA polymerase III chi subunit, HolC BB3739 PF01027 Inhibitor of apoptosis-promoting Bax1 BB3740 PF03401 Tripartite tricarboxylate transporter family receptor BB3742 PF00291 Pyridoxal-phosphate dependent enzyme BB3744 PF02565 Recombination protein O C terminal BB3744 PF11967 Recombination protein O N terminal BB3745 PF01926 50S ribosome-binding GTPase BB3745 PF07650 KH domain BB3746 PF14622 Ribonuclease-III-like BB3746 PF00035 Double-stranded RNA binding motif BB3747 PF10502 Signal peptidase, peptidase S26 BB3748 PF06421 GTP-binding protein LepA C-terminus BB3748 PF00009 Elongation factor Tu GTP binding domain BB3748 PF00679 Elongation factor G C-terminus BB3748 PF03144 Elongation factor Tu domain 2 BB3749 PF13180 PDZ domain BB3749 PF17820 PDZ domain BB3752 PF08281 Sigma-70, region 4 BB3752 PF04542 Sigma-70 region 2 BB3754 PF02801 Beta-ketoacyl synthase, C-terminal domain BB3754 PF00109 Beta-ketoacyl synthase, N-terminal domain BB3755 PF00550 Phosphopantetheine attachment site BB3757 PF00698 Acyl transferase domain BB3758 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BB3758 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BB3759 PF02504 Fatty acid synthesis protein BB3760 PF01783 Ribosomal L32p protein family BB3761 PF02620 Large ribosomal RNA subunit accumulation protein YceD BB3762 PF02545 Maf-like protein BB3763 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BB3764 PF01510 N-acetylmuramoyl-L-alanine amidase BB3765 PF01794 Ferric reductase like transmembrane component BB3766 PF00174 Oxidoreductase molybdopterin binding domain BB3767 PF13419 Haloacid dehalogenase-like hydrolase BB3768 PF00849 RNA pseudouridylate synthase BB3768 PF01479 S4 domain BB3769 PF00575 S1 RNA binding domain BB3769 PF10150 Ribonuclease E/G family BB3769 PF12111 Polyribonucleotide phosphorylase C terminal BB3771 PF09411 Lipid A 3-O-deacylase (PagL) BB3772 PF01039 Carboxyl transferase domain BB3772 PF17848 Acetyl-coA carboxylase zinc finger domain BB3773 PF00290 Tryptophan synthase alpha chain BB3774 PF00291 Pyridoxal-phosphate dependent enzyme BB3775 PF01546 Peptidase family M20/M25/M40 BB3775 PF07687 Peptidase dimerisation domain BB3776 PF13291 ACT domain BB3776 PF02824 TGS domain BB3776 PF04607 Region found in RelA / SpoT proteins BB3777 PF06167 Glucose-regulated metallo-peptidase M90 BB3779 PF01042 Endoribonuclease L-PSP BB3780 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain BB3780 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family BB3781 PF00037 4Fe-4S binding domain BB3781 PF11953 Domain of unknown function (DUF3470) BB3782 PF00970 Oxidoreductase FAD-binding domain BB3782 PF00175 Oxidoreductase NAD-binding domain BB3784 PF04060 Putative Fe-S cluster BB3785 PF00633 Helix-hairpin-helix motif BB3785 PF00730 HhH-GPD superfamily base excision DNA repair protein BB3785 PF10576 Iron-sulfur binding domain of endonuclease III BB3786 PF12399 Branched-chain amino acid ATP-binding cassette transporter BB3786 PF00005 ABC transporter BB3787 PF00005 ABC transporter BB3789 PF02653 Branched-chain amino acid transport system / permease component BB3792 PF01063 Amino-transferase class IV BB3793 PF00005 ABC transporter BB3794 PF00005 ABC transporter BB3794 PF12399 Branched-chain amino acid ATP-binding cassette transporter BB3797 PF02632 BioY family BB3798 PF02361 Cobalt transport protein BB3799 PF00005 ABC transporter BB3800 PF01641 SelR domain BB3801 PF04279 Intracellular septation protein A BB3802 PF01722 BolA-like protein BB3804 PF03120 NAD-dependent DNA ligase OB-fold domain BB3804 PF01653 NAD-dependent DNA ligase adenylation domain BB3804 PF12826 Helix-hairpin-helix motif BB3804 PF03119 NAD-dependent DNA ligase C4 zinc finger domain BB3804 PF00533 BRCA1 C Terminus (BRCT) domain BB3806 PF06470 SMC proteins Flexible Hinge Domain BB3806 PF02463 RecF/RecN/SMC N terminal domain BB3807 PF07690 Major Facilitator Superfamily BB3808 PF03167 Uracil DNA glycosylase superfamily BB3809 PF00814 Glycoprotease family BB3810 PF00486 Transcriptional regulatory protein, C terminal BB3810 PF00072 Response regulator receiver domain BB3811 PF00512 His Kinase A (phospho-acceptor) domain BB3811 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BB3811 PF00672 HAMP domain BB3812 PF00578 AhpC/TSA family BB3813 PF02627 Carboxymuconolactone decarboxylase family BB3816 PF02542 YgbB family BB3817 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase BB3818 PF17757 UvrB interaction domain BB3818 PF00271 Helicase conserved C-terminal domain BB3818 PF03461 TRCF domain BB3818 PF02559 CarD-like/TRCF domain BB3818 PF00270 DEAD/DEAH box helicase BB3820 PF03466 LysR substrate binding domain BB3820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB3821 PF03401 Tripartite tricarboxylate transporter family receptor BB3822 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BB3822 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BB3822 PF00205 Thiamine pyrophosphate enzyme, central domain BB3825 PF07715 TonB-dependent Receptor Plug Domain BB3825 PF00593 TonB dependent receptor BB3826 PF00593 TonB dependent receptor BB3826 PF07715 TonB-dependent Receptor Plug Domain BB3828 PF00361 Proton-conducting membrane transporter BB3829 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus BB3829 PF00361 Proton-conducting membrane transporter BB3830 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus BB3830 PF00361 Proton-conducting membrane transporter BB3831 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L BB3832 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 BB3833 PF12838 4Fe-4S dicluster domain BB3834 PF00146 NADH dehydrogenase BB3835 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BB3835 PF00384 Molybdopterin oxidoreductase BB3835 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal BB3836 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit BB3836 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BB3836 PF10531 SLBB domain BB3838 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit BB3839 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit BB3840 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit BB3841 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 BB3842 PF13609 Gram-negative porin BB3846 PF01569 PAP2 superfamily BB3848 PF00781 Diacylglycerol kinase catalytic domain BB3849 PF03466 LysR substrate binding domain BB3849 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB3850 PF02028 BCCT, betaine/carnitine/choline family transporter BB3851 PF01638 HxlR-like helix-turn-helix BB3852 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BB3853 PF00873 AcrB/AcrD/AcrF family BB3854 PF02321 Outer membrane efflux protein BB3856 PF00127 Copper binding proteins, plastocyanin/azurin family BB3858 PF01968 Hydantoinase/oxoprolinase BB3858 PF05378 Hydantoinase/oxoprolinase N-terminal region BB3860 PF01266 FAD dependent oxidoreductase BB3861 PF03401 Tripartite tricarboxylate transporter family receptor BB3864 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family BB3865 PF01053 Cys/Met metabolism PLP-dependent enzyme BB3866 PF03466 LysR substrate binding domain BB3866 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB3868 PF03401 Tripartite tricarboxylate transporter family receptor BB3869 PF00206 Lyase BB3869 PF14698 Argininosuccinate lyase C-terminal BB3871 PF03401 Tripartite tricarboxylate transporter family receptor BB3872 PF07476 Methylaspartate ammonia-lyase C-terminus BB3872 PF05034 Methylaspartate ammonia-lyase N-terminus BB3874 PF02028 BCCT, betaine/carnitine/choline family transporter BB3875 PF03840 Preprotein translocase SecG subunit BB3876 PF00121 Triosephosphate isomerase BB3877 PF14765 Polyketide synthase dehydratase BB3877 PF00550 Phosphopantetheine attachment site BB3877 PF08990 Erythronolide synthase docking BB3877 PF08659 KR domain BB3877 PF16197 Ketoacyl-synthetase C-terminal extension BB3877 PF00109 Beta-ketoacyl synthase, N-terminal domain BB3877 PF08240 Alcohol dehydrogenase GroES-like domain BB3877 PF00698 Acyl transferase domain BB3877 PF02801 Beta-ketoacyl synthase, C-terminal domain BB3879 PF00291 Pyridoxal-phosphate dependent enzyme BB3879 PF13291 ACT domain BB3881 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain BB3881 PF00575 S1 RNA binding domain BB3881 PF03725 3' exoribonuclease family, domain 2 BB3881 PF01138 3' exoribonuclease family, domain 1 BB3881 PF00013 KH domain BB3882 PF00312 Ribosomal protein S15 BB3884 PF01066 CDP-alcohol phosphatidyltransferase BB3885 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain BB3885 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain BB3886 PF10369 Small subunit of acetolactate synthase BB3887 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BB3887 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BB3887 PF00205 Thiamine pyrophosphate enzyme, central domain BB3888 PF12805 FUSC-like inner membrane protein yccS BB3890 PF03883 Peroxide stress protein YaaA BB3891 PF00106 short chain dehydrogenase BB3892 PF02254 TrkA-N domain BB3892 PF00999 Sodium/hydrogen exchanger family BB3893 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) BB3900 PF07660 Secretin and TonB N terminus short domain BB3900 PF00593 TonB dependent receptor BB3900 PF07715 TonB-dependent Receptor Plug Domain BB3903 PF00990 Diguanylate cyclase, GGDEF domain BB3903 PF17151 Periplasmic sensor domain BB3908 PF02403 Seryl-tRNA synthetase N-terminal domain BB3908 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BB3909 PF16193 AAA C-terminal domain BB3909 PF12002 MgsA AAA+ ATPase C terminal BB3909 PF00004 ATPase family associated with various cellular activities (AAA) BB3910 PF03548 Outer membrane lipoprotein carrier protein LolA BB3911 PF09397 Ftsk gamma domain BB3911 PF17854 FtsK alpha domain BB3911 PF01580 FtsK/SpoIIIE family BB3911 PF13491 4TM region of DNA translocase FtsK/SpoIIIE BB3912 PF07992 Pyridine nucleotide-disulphide oxidoreductase BB3913 PF00488 MutS domain V BB3913 PF01713 Smr domain BB3914 PF00893 Small Multidrug Resistance protein BB3915 PF00474 Sodium:solute symporter family BB3917 PF03814 Potassium-transporting ATPase A subunit BB3919 PF02669 K+-transporting ATPase, c chain BB3920 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BB3920 PF00512 His Kinase A (phospho-acceptor) domain BB3920 PF13493 Domain of unknown function (DUF4118) BB3920 PF02702 Osmosensitive K+ channel His kinase sensor domain BB3920 PF13492 GAF domain BB3921 PF00072 Response regulator receiver domain BB3921 PF00486 Transcriptional regulatory protein, C terminal BB3924 PF00180 Isocitrate/isopropylmalate dehydrogenase BB3927 PF00034 Cytochrome c BB3928 PF01434 Peptidase family M41 BB3928 PF17862 AAA+ lid domain BB3928 PF00004 ATPase family associated with various cellular activities (AAA) BB3932 PF00675 Insulinase (Peptidase family M16) BB3932 PF05193 Peptidase M16 inactive domain BB3933 PF00684 DnaJ central domain BB3933 PF00226 DnaJ domain BB3933 PF01556 DnaJ C terminal domain BB3934 PF00012 Hsp70 protein BB3936 PF01025 GrpE BB3938 PF00762 Ferrochelatase BB3939 PF01628 HrcA protein C terminal domain BB3939 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding BB3940 PF01513 ATP-NAD kinase BB3941 PF02463 RecF/RecN/SMC N terminal domain BB3942 PF01475 Ferric uptake regulator family BB3943 PF04355 SmpA / OmlA family BB3944 PF01113 Dihydrodipicolinate reductase, N-terminus BB3944 PF05173 Dihydrodipicolinate reductase, C-terminus BB3945 PF01565 FAD binding domain BB3945 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain BB3946 PF02515 CoA-transferase family III BB3947 PF01575 MaoC like domain BB3949 PF00378 Enoyl-CoA hydratase/isomerase BB3950 PF03401 Tripartite tricarboxylate transporter family receptor BB3954 PF03480 Bacterial extracellular solute-binding protein, family 7 BB3956 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BB3957 PF07729 FCD domain BB3957 PF00392 Bacterial regulatory proteins, gntR family BB3958 PF03328 HpcH/HpaI aldolase/citrate lyase family BB3959 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family BB3960 PF01925 Sulfite exporter TauE/SafE BB3962 PF01266 FAD dependent oxidoreductase BB3965 PF03401 Tripartite tricarboxylate transporter family receptor BB3967 PF01810 LysE type translocator BB3971 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB3971 PF03466 LysR substrate binding domain BB3973 PF03588 Leucyl/phenylalanyl-tRNA protein transferase BB3974 PF04377 Arginine-tRNA-protein transferase, C terminus BB3974 PF04376 Arginine-tRNA-protein transferase, N terminus BB3975 PF01180 Dihydroorotate dehydrogenase BB3977 PF03401 Tripartite tricarboxylate transporter family receptor BB3978 PF18807 Tripartite Tc toxins repeat BB3978 PF05785 Rho-activating domain of cytotoxic necrotizing factor BB3979 PF09339 IclR helix-turn-helix domain BB3979 PF01614 Bacterial transcriptional regulator BB3980 PF18146 Damage-inducible protein CinA KH domain BB3980 PF02464 Competence-damaged protein BB3980 PF00994 Probable molybdopterin binding domain BB3983 PF00270 DEAD/DEAH box helicase BB3983 PF00271 Helicase conserved C-terminal domain BB3986 PF01063 Amino-transferase class IV BB3989 PF00561 alpha/beta hydrolase fold BB3990 PF13181 Tetratricopeptide repeat BB3990 PF01435 Peptidase family M48 BB3991 PF00483 Nucleotidyl transferase BB3993 PF13609 Gram-negative porin BB3996 PF00557 Metallopeptidase family M24 BB3996 PF05195 Aminopeptidase P, N-terminal domain BB3998 PF01494 FAD binding domain BB3999 PF01207 Dihydrouridine synthase (Dus) BB4000 PF02954 Bacterial regulatory protein, Fis family BB4001 PF02142 MGS-like domain BB4001 PF01808 AICARFT/IMPCHase bienzyme BB4002 PF02075 Crossover junction endodeoxyribonuclease RuvC BB4003 PF07499 RuvA, C-terminal domain BB4003 PF01330 RuvA N terminal domain BB4004 PF01370 NAD dependent epimerase/dehydratase family BB4005 PF00291 Pyridoxal-phosphate dependent enzyme BB4006 PF05496 Holliday junction DNA helicase RuvB P-loop domain BB4006 PF05491 RuvB C-terminal winged helix domain BB4006 PF17864 RuvB AAA lid domain BB4007 PF00271 Helicase conserved C-terminal domain BB4007 PF00570 HRDC domain BB4007 PF09382 RQC domain BB4007 PF00270 DEAD/DEAH box helicase BB4007 PF16124 RecQ zinc-binding BB4009 PF00072 Response regulator receiver domain BB4009 PF00486 Transcriptional regulatory protein, C terminal BB4010 PF13493 Domain of unknown function (DUF4118) BB4010 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BB4010 PF02702 Osmosensitive K+ channel His kinase sensor domain BB4012 PF01654 Cytochrome bd terminal oxidase subunit I BB4013 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain BB4013 PF00749 tRNA synthetases class I (E and Q), catalytic domain BB4014 PF05209 Septum formation inhibitor MinC, N-terminal domain BB4014 PF03775 Septum formation inhibitor MinC, C-terminal domain BB4015 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain BB4016 PF03776 Septum formation topological specificity factor MinE BB4019 PF12848 ABC transporter BB4019 PF00005 ABC transporter BB4022 PF01425 Amidase BB4024 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BB4024 PF00005 ABC transporter BB4025 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BB4025 PF00005 ABC transporter BB4026 PF00528 Binding-protein-dependent transport system inner membrane component BB4026 PF12911 N-terminal TM domain of oligopeptide transport permease C BB4027 PF00528 Binding-protein-dependent transport system inner membrane component BB4028 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BB4029 PF00535 Glycosyl transferase family 2 BB4030 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB4030 PF03466 LysR substrate binding domain BB4032 PF17760 UvrA interaction domain BB4032 PF17755 UvrA DNA-binding domain BB4032 PF00005 ABC transporter BB4033 PF04715 Anthranilate synthase component I, N terminal region BB4033 PF00425 chorismate binding enzyme BB4034 PF01063 Amino-transferase class IV BB4036 PF03401 Tripartite tricarboxylate transporter family receptor BB4037 PF00501 AMP-binding enzyme BB4037 PF13193 AMP-binding enzyme C-terminal domain BB4038 PF07702 UTRA domain BB4038 PF00392 Bacterial regulatory proteins, gntR family BB4039 PF00899 ThiF family BB4040 PF07690 Major Facilitator Superfamily BB4042 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region BB4042 PF01243 Pyridoxamine 5'-phosphate oxidase BB4043 PF01613 Flavin reductase like domain BB4045 PF00551 Formyl transferase BB4046 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB4046 PF03466 LysR substrate binding domain BB4047 PF18158 Adaptive response protein AidB N-terminal domain BB4047 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BB4047 PF02770 Acyl-CoA dehydrogenase, middle domain BB4048 PF03401 Tripartite tricarboxylate transporter family receptor BB4049 PF02515 CoA-transferase family III BB4051 PF03466 LysR substrate binding domain BB4051 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB4052 PF03401 Tripartite tricarboxylate transporter family receptor BB4054 PF00206 Lyase BB4054 PF10415 Fumarase C C-terminus BB4055 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE BB4056 PF11741 AMIN domain BB4056 PF01520 N-acetylmuramoyl-L-alanine amidase BB4057 PF09335 SNARE associated Golgi protein BB4058 PF01119 DNA mismatch repair protein, C-terminal domain BB4058 PF08676 MutL C terminal dimerisation domain BB4060 PF00586 AIR synthase related protein, N-terminal domain BB4060 PF02769 AIR synthase related protein, C-terminal domain BB4061 PF00308 Bacterial dnaA protein BB4063 PF12627 Probable RNA and SrmB- binding site of polymerase A BB4063 PF12626 Polymerase A arginine-rich C-terminus BB4063 PF01743 Poly A polymerase head domain BB4064 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) BB4065 PF03401 Tripartite tricarboxylate transporter family receptor BB4067 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component BB4068 PF03480 Bacterial extracellular solute-binding protein, family 7 BB4069 PF00392 Bacterial regulatory proteins, gntR family BB4069 PF07702 UTRA domain BB4070 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BB4070 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BB4071 PF02627 Carboxymuconolactone decarboxylase family BB4072 PF12706 Beta-lactamase superfamily domain BB4074 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BB4074 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BB4076 PF03401 Tripartite tricarboxylate transporter family receptor BB4077 PF00294 pfkB family carbohydrate kinase BB4078 PF03328 HpcH/HpaI aldolase/citrate lyase family BB4082 PF00378 Enoyl-CoA hydratase/isomerase BB4083 PF03401 Tripartite tricarboxylate transporter family receptor BB4084 PF00392 Bacterial regulatory proteins, gntR family BB4084 PF07702 UTRA domain BB4085 PF00330 Aconitase family (aconitate hydratase) BB4086 PF00694 Aconitase C-terminal domain BB4089 PF02091 Glycyl-tRNA synthetase alpha subunit BB4090 PF02092 Glycyl-tRNA synthetase beta subunit BB4090 PF05746 DALR anticodon binding domain BB4092 PF01553 Acyltransferase BB4094 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BB4095 PF01327 Polypeptide deformylase BB4096 PF09317 Domain of unknown function (DUF1974) BB4096 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BB4096 PF02770 Acyl-CoA dehydrogenase, middle domain BB4096 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BB4097 PF07670 Nucleoside recognition BB4098 PF00224 Pyruvate kinase, barrel domain BB4098 PF02887 Pyruvate kinase, alpha/beta domain BB4099 PF02595 Glycerate kinase family BB4100 PF00398 Ribosomal RNA adenine dimethylase BB4101 PF09312 SurA N-terminal domain BB4101 PF00639 PPIC-type PPIASE domain BB4102 PF04453 LPS transport system D BB4103 PF01636 Phosphotransferase enzyme family BB4104 PF00483 Nucleotidyl transferase BB4106 PF01329 Pterin 4 alpha carbinolamine dehydratase BB4107 PF04972 BON domain BB4107 PF00691 OmpA family BB4110 PF00202 Aminotransferase class-III BB4111 PF01425 Amidase BB4112 PF00005 ABC transporter BB4112 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BB4113 PF00528 Binding-protein-dependent transport system inner membrane component BB4114 PF00528 Binding-protein-dependent transport system inner membrane component BB4115 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BB4118 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain BB4119 PF16653 Saccharopine dehydrogenase C-terminal domain BB4119 PF03435 Saccharopine dehydrogenase NADP binding domain BB4121 PF04773 FecR protein BB4121 PF16220 Domain of unknown function (DUF4880) BB4122 PF07715 TonB-dependent Receptor Plug Domain BB4122 PF00593 TonB dependent receptor BB4123 PF04264 YceI-like domain BB4124 PF01272 Transcription elongation factor, GreA/GreB, C-term BB4124 PF03449 Transcription elongation factor, N-terminal BB4125 PF00355 Rieske [2Fe-2S] domain BB4125 PF00848 Ring hydroxylating alpha subunit (catalytic domain) BB4127 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB4127 PF03466 LysR substrate binding domain BB4128 PF03401 Tripartite tricarboxylate transporter family receptor BB4129 PF00561 alpha/beta hydrolase fold BB4131 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase BB4131 PF07746 Aromatic-ring-opening dioxygenase LigAB, LigA subunit BB4132 PF01557 Fumarylacetoacetate (FAA) hydrolase family BB4151 PF00440 Bacterial regulatory proteins, tetR family BB4152 PF05170 AsmA family BB4153 PF03352 Methyladenine glycosylase BB4154 PF00376 MerR family regulatory protein BB4154 PF09278 MerR, DNA binding BB4156 PF01547 Bacterial extracellular solute-binding protein BB4157 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BB4157 PF07992 Pyridine nucleotide-disulphide oxidoreductase BB4158 PF17912 MalK OB fold domain BB4158 PF00005 ABC transporter BB4159 PF00528 Binding-protein-dependent transport system inner membrane component BB4160 PF14785 Maltose transport system permease protein MalF P2 domain BB4160 PF00528 Binding-protein-dependent transport system inner membrane component BB4163 PF03401 Tripartite tricarboxylate transporter family receptor BB4164 PF07729 FCD domain BB4164 PF00392 Bacterial regulatory proteins, gntR family BB4168 PF00465 Iron-containing alcohol dehydrogenase BB4169 PF03180 NLPA lipoprotein BB4170 PF00528 Binding-protein-dependent transport system inner membrane component BB4171 PF00005 ABC transporter BB4171 PF09383 NIL domain BB4172 PF13802 Galactose mutarotase-like BB4172 PF01055 Glycosyl hydrolases family 31 BB4173 PF01266 FAD dependent oxidoreductase BB4173 PF05430 S-adenosyl-L-methionine-dependent methyltransferase BB4174 PF00459 Inositol monophosphatase family BB4175 PF13193 AMP-binding enzyme C-terminal domain BB4175 PF00501 AMP-binding enzyme BB4176 PF01546 Peptidase family M20/M25/M40 BB4176 PF07687 Peptidase dimerisation domain BB4177 PF03466 LysR substrate binding domain BB4177 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB4178 PF03601 Conserved hypothetical protein 698 BB4179 PF03061 Thioesterase superfamily BB4180 PF00571 CBS domain BB4180 PF01769 Divalent cation transporter BB4180 PF03448 MgtE intracellular N domain BB4181 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP BB4183 PF01037 Lrp/AsnC ligand binding domain BB4184 PF01266 FAD dependent oxidoreductase BB4185 PF00106 short chain dehydrogenase BB4187 PF03401 Tripartite tricarboxylate transporter family receptor BB4189 PF01043 SecA preprotein cross-linking domain BB4189 PF07516 SecA Wing and Scaffold domain BB4189 PF07517 SecA DEAD-like domain BB4189 PF02810 SEC-C motif BB4190 PF01551 Peptidase family M23 BB4190 PF08525 Opacity-associated protein A N-terminal motif BB4190 PF01476 LysM domain BB4192 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase BB4193 PF00091 Tubulin/FtsZ family, GTPase domain BB4193 PF12327 FtsZ family, C-terminal domain BB4194 PF02491 SHS2 domain inserted in FTSA BB4195 PF03799 Cell division protein FtsQ BB4195 PF08478 POTRA domain, FtsQ-type BB4196 PF07478 D-ala D-ala ligase C-terminus BB4196 PF01820 D-ala D-ala ligase N-terminus BB4197 PF01225 Mur ligase family, catalytic domain BB4197 PF02875 Mur ligase family, glutamate ligase domain BB4197 PF08245 Mur ligase middle domain BB4198 PF03033 Glycosyltransferase family 28 N-terminal domain BB4198 PF04101 Glycosyltransferase family 28 C-terminal domain BB4199 PF01098 Cell cycle protein BB4200 PF08245 Mur ligase middle domain BB4200 PF02875 Mur ligase family, glutamate ligase domain BB4201 PF00953 Glycosyl transferase family 4 BB4202 PF02875 Mur ligase family, glutamate ligase domain BB4202 PF08245 Mur ligase middle domain BB4203 PF00905 Penicillin binding protein transpeptidase domain BB4203 PF03717 Penicillin-binding Protein dimerisation domain BB4204 PF04999 Cell division protein FtsL BB4205 PF01795 MraW methylase family BB4206 PF02381 MraZ protein, putative antitoxin-like BB4208 PF01979 Amidohydrolase family BB4209 PF07687 Peptidase dimerisation domain BB4209 PF01546 Peptidase family M20/M25/M40 BB4212 PF01037 Lrp/AsnC ligand binding domain BB4213 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BB4214 PF01625 Peptide methionine sulfoxide reductase BB4215 PF00034 Cytochrome c BB4216 PF00920 Dehydratase family BB4217 PF01790 Prolipoprotein diacylglyceryl transferase BB4222 PF01970 Tripartite tricarboxylate transporter TctA family BB4224 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase BB4224 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase BB4225 PF02525 Flavodoxin-like fold BB4226 PF03466 LysR substrate binding domain BB4226 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB4229 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BB4229 PF00512 His Kinase A (phospho-acceptor) domain BB4230 PF00072 Response regulator receiver domain BB4230 PF00486 Transcriptional regulatory protein, C terminal BB4231 PF00293 NUDIX domain BB4232 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) BB4232 PF04073 Aminoacyl-tRNA editing domain BB4232 PF03129 Anticodon binding domain BB4233 PF03061 Thioesterase superfamily BB4234 PF01618 MotA/TolQ/ExbB proton channel family BB4235 PF02472 Biopolymer transport protein ExbD/TolR BB4237 PF04052 TolB amino-terminal domain BB4237 PF07676 WD40-like Beta Propeller Repeat BB4238 PF00691 OmpA family BB4240 PF01032 FecCD transport family BB4241 PF00005 ABC transporter BB4242 PF03401 Tripartite tricarboxylate transporter family receptor BB4244 PF01047 MarR family BB4245 PF01266 FAD dependent oxidoreductase BB4248 PF03401 Tripartite tricarboxylate transporter family receptor BB4249 PF00501 AMP-binding enzyme BB4249 PF13193 AMP-binding enzyme C-terminal domain BB4250 PF02803 Thiolase, C-terminal domain BB4250 PF00108 Thiolase, N-terminal domain BB4252 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BB4252 PF02770 Acyl-CoA dehydrogenase, middle domain BB4252 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BB4253 PF03466 LysR substrate binding domain BB4253 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB4254 PF03401 Tripartite tricarboxylate transporter family receptor BB4255 PF00378 Enoyl-CoA hydratase/isomerase BB4256 PF02515 CoA-transferase family III BB4257 PF03471 Transporter associated domain BB4257 PF03741 Integral membrane protein TerC family BB4258 PF02308 MgtC family BB4259 PF00679 Elongation factor G C-terminus BB4259 PF03764 Elongation factor G, domain IV BB4259 PF00009 Elongation factor Tu GTP binding domain BB4259 PF14492 Elongation Factor G, domain II BB4259 PF03144 Elongation factor Tu domain 2 BB4260 PF00582 Universal stress protein family BB4262 PF00392 Bacterial regulatory proteins, gntR family BB4262 PF00155 Aminotransferase class I and II BB4263 PF00892 EamA-like transporter family BB4264 PF01810 LysE type translocator BB4265 PF12146 Serine aminopeptidase, S33 BB4268 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase BB4269 PF00535 Glycosyl transferase family 2 BB4271 PF03616 Sodium/glutamate symporter BB4273 PF02667 Short chain fatty acid transporter BB4275 PF00929 Exonuclease BB4276 PF00873 AcrB/AcrD/AcrF family BB4277 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion BB4278 PF00075 RNase H BB4279 PF08241 Methyltransferase domain BB4281 PF01464 Transglycosylase SLT domain BB4281 PF01476 LysM domain BB4284 PF04391 Protein of unknown function (DUF533) BB4285 PF03401 Tripartite tricarboxylate transporter family receptor BB4286 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain BB4286 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain BB4292 PF02653 Branched-chain amino acid transport system / permease component BB4294 PF00005 ABC transporter BB4296 PF13458 Periplasmic binding protein BB4297 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB4297 PF03466 LysR substrate binding domain BB4299 PF01425 Amidase BB4300 PF00111 2Fe-2S iron-sulfur cluster binding domain BB4300 PF00175 Oxidoreductase NAD-binding domain BB4301 PF09297 NADH pyrophosphatase zinc ribbon domain BB4301 PF00293 NUDIX domain BB4302 PF00440 Bacterial regulatory proteins, tetR family BB4303 PF02515 CoA-transferase family III BB4304 PF00109 Beta-ketoacyl synthase, N-terminal domain BB4304 PF08990 Erythronolide synthase docking BB4304 PF16197 Ketoacyl-synthetase C-terminal extension BB4304 PF08240 Alcohol dehydrogenase GroES-like domain BB4304 PF02801 Beta-ketoacyl synthase, C-terminal domain BB4304 PF08659 KR domain BB4304 PF00698 Acyl transferase domain BB4304 PF14765 Polyketide synthase dehydratase BB4304 PF00550 Phosphopantetheine attachment site BB4305 PF03401 Tripartite tricarboxylate transporter family receptor BB4306 PF00378 Enoyl-CoA hydratase/isomerase BB4307 PF00005 ABC transporter BB4309 PF00528 Binding-protein-dependent transport system inner membrane component BB4310 PF00392 Bacterial regulatory proteins, gntR family BB4310 PF07702 UTRA domain BB4312 PF03401 Tripartite tricarboxylate transporter family receptor BB4313 PF07702 UTRA domain BB4313 PF00392 Bacterial regulatory proteins, gntR family BB4315 PF12411 Choline sulfatase enzyme C terminal BB4315 PF00884 Sulfatase BB4316 PF05199 GMC oxidoreductase BB4316 PF00732 GMC oxidoreductase BB4317 PF00175 Oxidoreductase NAD-binding domain BB4317 PF00111 2Fe-2S iron-sulfur cluster binding domain BB4317 PF00970 Oxidoreductase FAD-binding domain BB4319 PF00171 Aldehyde dehydrogenase family BB4320 PF02492 CobW/HypB/UreG, nucleotide-binding domain BB4321 PF01730 UreF BB4322 PF02814 UreE urease accessory protein, N-terminal domain BB4322 PF05194 UreE urease accessory protein, C-terminal domain BB4323 PF01979 Amidohydrolase family BB4323 PF00449 Urease alpha-subunit, N-terminal domain BB4324 PF00699 Urease beta subunit BB4325 PF04955 HupE / UreJ protein BB4326 PF00547 Urease, gamma subunit BB4327 PF01774 UreD urease accessory protein BB4328 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB4328 PF03466 LysR substrate binding domain BB4329 PF03401 Tripartite tricarboxylate transporter family receptor BB4330 PF03401 Tripartite tricarboxylate transporter family receptor BB4334 PF02515 CoA-transferase family III BB4336 PF07702 UTRA domain BB4336 PF00392 Bacterial regulatory proteins, gntR family BB4337 PF07476 Methylaspartate ammonia-lyase C-terminus BB4337 PF05034 Methylaspartate ammonia-lyase N-terminus BB4338 PF03401 Tripartite tricarboxylate transporter family receptor BB4341 PF04293 SpoVR like protein BB4342 PF04285 Protein of unknown function (DUF444) BB4343 PF06798 PrkA serine protein kinase C-terminal domain BB4343 PF08298 PrkA AAA domain BB4344 PF01872 RibD C-terminal domain BB4344 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region BB4346 PF01965 DJ-1/PfpI family BB4346 PF12833 Helix-turn-helix domain BB4347 PF03477 ATP cone domain BB4348 PF00464 Serine hydroxymethyltransferase BB4350 PF01479 S4 domain BB4350 PF00579 tRNA synthetases class I (W and Y) BB4351 PF01551 Peptidase family M23 BB4351 PF08460 Bacterial SH3 domain BB4352 PF03702 Anhydro-N-acetylmuramic acid kinase BB4353 PF01521 Iron-sulphur cluster biosynthesis BB4355 PF01118 Semialdehyde dehydrogenase, NAD binding domain BB4355 PF02774 Semialdehyde dehydrogenase, dimerisation domain BB4356 PF00380 Ribosomal protein S9/S16 BB4357 PF00572 Ribosomal protein L13 BB4358 PF03480 Bacterial extracellular solute-binding protein, family 7 BB4359 PF01523 Putative modulator of DNA gyrase BB4360 PF04751 Protein of unknown function (DUF615) BB4361 PF02230 Phospholipase/Carboxylesterase BB4363 PF00005 ABC transporter BB4364 PF00528 Binding-protein-dependent transport system inner membrane component BB4365 PF00857 Isochorismatase family BB4366 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily BB4367 PF03880 DbpA RNA binding domain BB4367 PF00271 Helicase conserved C-terminal domain BB4367 PF00270 DEAD/DEAH box helicase BB4369 PF07729 FCD domain BB4369 PF00392 Bacterial regulatory proteins, gntR family BB4370 PF13607 Succinyl-CoA ligase like flavodoxin domain BB4370 PF13380 CoA binding domain BB4370 PF00583 Acetyltransferase (GNAT) family BB4371 PF00749 tRNA synthetases class I (E and Q), catalytic domain BB4374 PF01037 Lrp/AsnC ligand binding domain BB4376 PF00317 Ribonucleotide reductase, all-alpha domain BB4376 PF03477 ATP cone domain BB4376 PF02867 Ribonucleotide reductase, barrel domain BB4377 PF00268 Ribonucleotide reductase, small chain BB4380 PF00501 AMP-binding enzyme BB4380 PF13193 AMP-binding enzyme C-terminal domain BB4381 PF03062 MBOAT, membrane-bound O-acyltransferase family BB4386 PF00294 pfkB family carbohydrate kinase BB4389 PF02785 Biotin carboxylase C-terminal domain BB4389 PF00289 Biotin carboxylase, N-terminal domain BB4389 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BB4390 PF00364 Biotin-requiring enzyme BB4391 PF01220 Dehydroquinase class II BB4392 PF08534 Redoxin BB4393 PF08245 Mur ligase middle domain BB4393 PF02875 Mur ligase family, glutamate ligase domain BB4393 PF01225 Mur ligase family, catalytic domain BB4394 PF05728 Uncharacterised protein family (UPF0227) BB4395 PF00773 RNB domain BB4397 PF01488 Shikimate / quinate 5-dehydrogenase BB4397 PF08501 Shikimate dehydrogenase substrate binding domain BB4397 PF18317 Shikimate 5'-dehydrogenase C-terminal domain BB4398 PF00912 Transglycosylase BB4400 PF00149 Calcineurin-like phosphoesterase BB4401 PF01553 Acyltransferase BB4402 PF01979 Amidohydrolase family BB4403 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain BB4403 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain BB4404 PF03652 Holliday junction resolvase BB4405 PF02622 Uncharacterized ACR, COG1678 BB4406 PF00301 Rubredoxin BB4407 PF08543 Phosphomethylpyrimidine kinase BB4408 PF02581 Thiamine monophosphate synthase BB4409 PF00202 Aminotransferase class-III BB4413 PF00501 AMP-binding enzyme BB4413 PF13193 AMP-binding enzyme C-terminal domain BB4414 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BB4414 PF02770 Acyl-CoA dehydrogenase, middle domain BB4414 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BB4415 PF00378 Enoyl-CoA hydratase/isomerase BB4416 PF00106 short chain dehydrogenase BB4417 PF01494 FAD binding domain BB4418 PF00005 ABC transporter BB4419 PF00005 ABC transporter BB4419 PF12399 Branched-chain amino acid ATP-binding cassette transporter BB4420 PF02653 Branched-chain amino acid transport system / permease component BB4420 PF11862 Domain of unknown function (DUF3382) BB4421 PF02653 Branched-chain amino acid transport system / permease component BB4423 PF07859 alpha/beta hydrolase fold BB4426 PF01960 ArgJ family BB4428 PF00293 NUDIX domain BB4429 PF02321 Outer membrane efflux protein BB4430 PF00873 AcrB/AcrD/AcrF family BB4431 PF00873 AcrB/AcrD/AcrF family BB4432 PF13533 Biotin-lipoyl like BB4433 PF07072 Cell division protein BB4434 PF01121 Dephospho-CoA kinase BB4435 PF06750 Bacterial Peptidase A24 N-terminal domain BB4435 PF01478 Type IV leader peptidase family BB4438 PF02569 Pantoate-beta-alanine ligase BB4439 PF02616 Segregation and condensation protein ScpA BB4441 PF07690 Major Facilitator Superfamily BB4442 PF02782 FGGY family of carbohydrate kinases, C-terminal domain BB4442 PF00370 FGGY family of carbohydrate kinases, N-terminal domain BB4444 PF03401 Tripartite tricarboxylate transporter family receptor BB4445 PF00005 ABC transporter BB4446 PF00528 Binding-protein-dependent transport system inner membrane component BB4447 PF00528 Binding-protein-dependent transport system inner membrane component BB4448 PF00497 Bacterial extracellular solute-binding proteins, family 3 BB4449 PF00005 ABC transporter BB4450 PF18075 FtsX extracellular domain BB4451 PF03975 CheD chemotactic sensory transduction BB4453 PF00730 HhH-GPD superfamily base excision DNA repair protein BB4453 PF14815 NUDIX domain BB4453 PF00633 Helix-hairpin-helix motif BB4453 PF10576 Iron-sulfur binding domain of endonuclease III BB4455 PF08241 Methyltransferase domain BB4456 PF02607 B12 binding domain BB4456 PF02965 Vitamin B12 dependent methionine synthase, activation domain BB4456 PF00809 Pterin binding enzyme BB4456 PF02310 B12 binding domain BB4456 PF02574 Homocysteine S-methyltransferase BB4457 PF00593 TonB dependent receptor BB4457 PF07715 TonB-dependent Receptor Plug Domain BB4458 PF01497 Periplasmic binding protein BB4459 PF05690 Thiazole biosynthesis protein ThiG BB4460 PF08543 Phosphomethylpyrimidine kinase BB4462 PF02321 Outer membrane efflux protein BB4463 PF01467 Cytidylyltransferase-like BB4465 PF03109 ABC1 family BB4468 PF01209 ubiE/COQ5 methyltransferase family BB4469 PF00072 Response regulator receiver domain BB4469 PF00486 Transcriptional regulatory protein, C terminal BB4470 PF00989 PAS fold BB4470 PF11808 Phosphate regulon sensor protein PhoR BB4470 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BB4470 PF00512 His Kinase A (phospho-acceptor) domain BB4471 PF00486 Transcriptional regulatory protein, C terminal BB4471 PF00072 Response regulator receiver domain BB4472 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BB4472 PF00672 HAMP domain BB4472 PF00512 His Kinase A (phospho-acceptor) domain BB4474 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BB4474 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BB4474 PF01842 ACT domain BB4475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB4475 PF03466 LysR substrate binding domain BB4477 PF02682 Carboxyltransferase domain, subdomain C and D BB4478 PF02626 Carboxyltransferase domain, subdomain A and B BB4479 PF03746 LamB/YcsF family BB4481 PF03401 Tripartite tricarboxylate transporter family receptor BB4482 PF01494 FAD binding domain BB4483 PF00378 Enoyl-CoA hydratase/isomerase BB4484 PF07859 alpha/beta hydrolase fold BB4485 PF02515 CoA-transferase family III BB4486 PF07729 FCD domain BB4486 PF00392 Bacterial regulatory proteins, gntR family BB4488 PF09335 SNARE associated Golgi protein BB4489 PF00291 Pyridoxal-phosphate dependent enzyme BB4489 PF00585 C-terminal regulatory domain of Threonine dehydratase BB4490 PF13609 Gram-negative porin BB4492 PF03466 LysR substrate binding domain BB4492 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB4493 PF00156 Phosphoribosyl transferase domain BB4494 PF00664 ABC transporter transmembrane region BB4494 PF00005 ABC transporter BB4495 PF00005 ABC transporter BB4495 PF00664 ABC transporter transmembrane region BB4496 PF08173 Membrane bound YbgT-like protein BB4497 PF02322 Cytochrome bd terminal oxidase subunit II BB4498 PF01654 Cytochrome bd terminal oxidase subunit I BB4500 PF01370 NAD dependent epimerase/dehydratase family BB4500 PF02222 ATP-grasp domain BB4501 PF00571 CBS domain BB4501 PF01380 SIS domain BB4505 PF00005 ABC transporter BB4506 PF02482 Sigma 54 modulation protein / S30EA ribosomal protein BB4507 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 BB4508 PF02603 HPr Serine kinase N terminus BB4508 PF07475 HPr Serine kinase C-terminal domain BB4509 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BB4509 PF00034 Cytochrome c BB4509 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase BB4511 PF03668 P-loop ATPase protein family BB4512 PF03330 Lytic transglycolase BB4512 PF05036 Sporulation related domain BB4513 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BB4513 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BB4514 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases BB4515 PF02021 Uncharacterised protein family UPF0102 BB4516 PF13580 SIS domain BB4517 PF04972 BON domain BB4518 PF00578 AhpC/TSA family BB4519 PF03180 NLPA lipoprotein BB4520 PF00696 Amino acid kinase family BB4522 PF00440 Bacterial regulatory proteins, tetR family BB4523 PF00939 Sodium:sulfate symporter transmembrane region BB4524 PF02615 Malate/L-lactate dehydrogenase BB4525 PF01098 Cell cycle protein BB4526 PF03717 Penicillin-binding Protein dimerisation domain BB4526 PF00905 Penicillin binding protein transpeptidase domain BB4528 PF04085 rod shape-determining protein MreC BB4530 PF02686 Glu-tRNAGln amidotransferase C subunit BB4531 PF01425 Amidase BB4532 PF02934 GatB/GatE catalytic domain BB4532 PF02637 GatB domain BB4533 PF00156 Phosphoribosyl transferase domain BB4534 PF03372 Endonuclease/Exonuclease/phosphatase family BB4535 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BB4535 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain BB4536 PF03458 UPF0126 domain BB4538 PF03466 LysR substrate binding domain BB4538 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB4539 PF00180 Isocitrate/isopropylmalate dehydrogenase BB4540 PF01436 NHL repeat BB4540 PF00934 PE family BB4542 PF00072 Response regulator receiver domain BB4542 PF00486 Transcriptional regulatory protein, C terminal BB4543 PF00672 HAMP domain BB4543 PF00512 His Kinase A (phospho-acceptor) domain BB4543 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BB4544 PF03466 LysR substrate binding domain BB4544 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB4545 PF00291 Pyridoxal-phosphate dependent enzyme BB4546 PF00497 Bacterial extracellular solute-binding proteins, family 3 BB4547 PF00528 Binding-protein-dependent transport system inner membrane component BB4548 PF00528 Binding-protein-dependent transport system inner membrane component BB4549 PF00005 ABC transporter BB4550 PF01177 Asp/Glu/Hydantoin racemase BB4551 PF13609 Gram-negative porin BB4552 PF07690 Major Facilitator Superfamily BB4553 PF07021 Methionine biosynthesis protein MetW BB4553 PF00561 alpha/beta hydrolase fold BB4554 PF00561 alpha/beta hydrolase fold BB4555 PF02615 Malate/L-lactate dehydrogenase BB4559 PF00561 alpha/beta hydrolase fold BB4560 PF04262 Glutamate-cysteine ligase BB4563 PF03401 Tripartite tricarboxylate transporter family receptor BB4564 PF03466 LysR substrate binding domain BB4564 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB4565 PF02548 Ketopantoate hydroxymethyltransferase BB4566 PF13609 Gram-negative porin BB4567 PF00356 Bacterial regulatory proteins, lacI family BB4568 PF02653 Branched-chain amino acid transport system / permease component BB4570 PF00005 ABC transporter BB4570 PF12399 Branched-chain amino acid ATP-binding cassette transporter BB4571 PF00005 ABC transporter BB4572 PF13458 Periplasmic binding protein BB4575 PF05995 Cysteine dioxygenase type I BB4576 PF09339 IclR helix-turn-helix domain BB4576 PF01614 Bacterial transcriptional regulator BB4577 PF02515 CoA-transferase family III BB4579 PF05275 Copper resistance protein B precursor (CopB) BB4580 PF00394 Multicopper oxidase BB4580 PF07731 Multicopper oxidase BB4580 PF07732 Multicopper oxidase BB4582 PF13442 Cytochrome C oxidase, cbb3-type, subunit III BB4583 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BB4583 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BB4583 PF18321 3-hydroxybutyryl-CoA dehydrogenase reduced Rossmann-fold domain BB4584 PF02515 CoA-transferase family III BB4588 PF00378 Enoyl-CoA hydratase/isomerase BB4589 PF00378 Enoyl-CoA hydratase/isomerase BB4590 PF01256 Carbohydrate kinase BB4592 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BB4594 PF00528 Binding-protein-dependent transport system inner membrane component BB4595 PF12911 N-terminal TM domain of oligopeptide transport permease C BB4595 PF00528 Binding-protein-dependent transport system inner membrane component BB4596 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BB4596 PF00005 ABC transporter BB4597 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BB4597 PF00005 ABC transporter BB4599 PF01546 Peptidase family M20/M25/M40 BB4599 PF07687 Peptidase dimerisation domain BB4600 PF13361 UvrD-like helicase C-terminal domain BB4600 PF00580 UvrD/REP helicase N-terminal domain BB4601 PF00270 DEAD/DEAH box helicase BB4601 PF00271 Helicase conserved C-terminal domain BB4601 PF18074 Primosomal protein N C-terminal domain BB4601 PF17764 3′ DNA-binding domain (3′BD) BB4601 PF18319 PriA DNA helicase Cys-rich region (CRR) domain BB4602 PF01208 Uroporphyrinogen decarboxylase (URO-D) BB4604 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain BB4605 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BB4605 PF02874 ATP synthase alpha/beta family, beta-barrel domain BB4606 PF00231 ATP synthase BB4607 PF02874 ATP synthase alpha/beta family, beta-barrel domain BB4607 PF00306 ATP synthase alpha/beta chain, C terminal domain BB4607 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain BB4608 PF00213 ATP synthase delta (OSCP) subunit BB4609 PF00430 ATP synthase B/B' CF(0) BB4610 PF00137 ATP synthase subunit C BB4611 PF00119 ATP synthase A chain BB4614 PF00378 Enoyl-CoA hydratase/isomerase BB4616 PF07992 Pyridine nucleotide-disulphide oxidoreductase BB4618 PF01171 PP-loop family BB4619 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BB4619 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BB4619 PF01842 ACT domain BB4620 PF13098 Thioredoxin-like domain BB4620 PF10411 Disulfide bond isomerase protein N-terminus BB4621 PF01494 FAD binding domain BB4622 PF03562 MltA specific insert domain BB4622 PF06725 3D domain BB4623 PF04379 ApaG domain BB4625 PF13419 Haloacid dehalogenase-like hydrolase BB4626 PF04715 Anthranilate synthase component I, N terminal region BB4626 PF00425 chorismate binding enzyme BB4627 PF00117 Glutamine amidotransferase class-I BB4628 PF02885 Glycosyl transferase family, helical bundle domain BB4628 PF00591 Glycosyl transferase family, a/b domain BB4629 PF00218 Indole-3-glycerol phosphate synthase BB4631 PF01323 DSBA-like thioredoxin domain BB4633 PF03466 LysR substrate binding domain BB4633 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB4634 PF00753 Metallo-beta-lactamase superfamily BB4636 PF03061 Thioesterase superfamily BB4641 PF00111 2Fe-2S iron-sulfur cluster binding domain BB4641 PF00970 Oxidoreductase FAD-binding domain BB4641 PF00175 Oxidoreductase NAD-binding domain BB4643 PF00171 Aldehyde dehydrogenase family BB4647 PF00392 Bacterial regulatory proteins, gntR family BB4647 PF07729 FCD domain BB4648 PF02423 Ornithine cyclodeaminase/mu-crystallin family BB4653 PF04542 Sigma-70 region 2 BB4653 PF08281 Sigma-70, region 4 BB4654 PF04773 FecR protein BB4654 PF16220 Domain of unknown function (DUF4880) BB4655 PF07715 TonB-dependent Receptor Plug Domain BB4655 PF04886 PT repeat BB4655 PF00593 TonB dependent receptor BB4656 PF05171 Haemin-degrading HemS.ChuX domain BB4657 PF01497 Periplasmic binding protein BB4658 PF01032 FecCD transport family BB4659 PF00005 ABC transporter BB4660 PF04463 Protein of unknown function (DUF523) BB4661 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA BB4662 PF13532 2OG-Fe(II) oxygenase superfamily BB4663 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain BB4663 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain BB4664 PF00990 Diguanylate cyclase, GGDEF domain BB4664 PF03707 Bacterial signalling protein N terminal repeat BB4664 PF00563 EAL domain BB4666 PF11737 Protein of unknown function (DUF3300) BB4667 PF03466 LysR substrate binding domain BB4667 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB4668 PF03401 Tripartite tricarboxylate transporter family receptor BB4669 PF12706 Beta-lactamase superfamily domain BB4671 PF00266 Aminotransferase class-V BB4672 PF07729 FCD domain BB4672 PF00392 Bacterial regulatory proteins, gntR family BB4674 PF00115 Cytochrome C and Quinol oxidase polypeptide I BB4675 PF03401 Tripartite tricarboxylate transporter family receptor BB4676 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB4676 PF03466 LysR substrate binding domain BB4678 PF02515 CoA-transferase family III BB4680 PF03401 Tripartite tricarboxylate transporter family receptor BB4682 PF03401 Tripartite tricarboxylate transporter family receptor BB4683 PF03466 LysR substrate binding domain BB4683 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB4684 PF02615 Malate/L-lactate dehydrogenase BB4685 PF00392 Bacterial regulatory proteins, gntR family BB4685 PF07729 FCD domain BB4687 PF13378 Enolase C-terminal domain-like BB4687 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain BB4689 PF03401 Tripartite tricarboxylate transporter family receptor BB4692 PF03401 Tripartite tricarboxylate transporter family receptor BB4695 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain BB4695 PF07992 Pyridine nucleotide-disulphide oxidoreductase BB4696 PF00005 ABC transporter BB4697 PF12399 Branched-chain amino acid ATP-binding cassette transporter BB4697 PF00005 ABC transporter BB4698 PF02653 Branched-chain amino acid transport system / permease component BB4699 PF13458 Periplasmic binding protein BB4701 PF13193 AMP-binding enzyme C-terminal domain BB4701 PF00501 AMP-binding enzyme BB4702 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BB4702 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BB4702 PF02770 Acyl-CoA dehydrogenase, middle domain BB4703 PF02817 e3 binding domain BB4703 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) BB4703 PF00364 Biotin-requiring enzyme BB4704 PF00378 Enoyl-CoA hydratase/isomerase BB4704A PF02780 Transketolase, C-terminal domain BB4704A PF02779 Transketolase, pyrimidine binding domain BB4705 PF00676 Dehydrogenase E1 component BB4709 PF03401 Tripartite tricarboxylate transporter family receptor BB4710 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BB4710 PF02770 Acyl-CoA dehydrogenase, middle domain BB4710 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BB4711 PF00378 Enoyl-CoA hydratase/isomerase BB4712 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III BB4712 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal BB4715 PF01575 MaoC like domain BB4716 PF02770 Acyl-CoA dehydrogenase, middle domain BB4716 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BB4716 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BB4717 PF03401 Tripartite tricarboxylate transporter family receptor BB4718 PF02515 CoA-transferase family III BB4719 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB4719 PF03466 LysR substrate binding domain BB4720 PF00701 Dihydrodipicolinate synthetase family BB4723 PF02682 Carboxyltransferase domain, subdomain C and D BB4724 PF02626 Carboxyltransferase domain, subdomain A and B BB4725 PF03746 LamB/YcsF family BB4726 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BB4727 PF00528 Binding-protein-dependent transport system inner membrane component BB4728 PF12911 N-terminal TM domain of oligopeptide transport permease C BB4728 PF00528 Binding-protein-dependent transport system inner membrane component BB4729 PF00005 ABC transporter BB4729 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BB4730 PF01546 Peptidase family M20/M25/M40 BB4730 PF07687 Peptidase dimerisation domain BB4731 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain BB4731 PF01842 ACT domain BB4731 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain BB4734 PF00364 Biotin-requiring enzyme BB4735 PF02785 Biotin carboxylase C-terminal domain BB4735 PF00289 Biotin carboxylase, N-terminal domain BB4735 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BB4736 PF00155 Aminotransferase class I and II BB4738 PF02769 AIR synthase related protein, C-terminal domain BB4738 PF00586 AIR synthase related protein, N-terminal domain BB4744 PF07715 TonB-dependent Receptor Plug Domain BB4744 PF00593 TonB dependent receptor BB4746 PF02515 CoA-transferase family III BB4747 PF09339 IclR helix-turn-helix domain BB4747 PF01614 Bacterial transcriptional regulator BB4748 PF00107 Zinc-binding dehydrogenase BB4748 PF08240 Alcohol dehydrogenase GroES-like domain BB4749 PF03401 Tripartite tricarboxylate transporter family receptor BB4752 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BB4752 PF02770 Acyl-CoA dehydrogenase, middle domain BB4752 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BB4753 PF02515 CoA-transferase family III BB4754 PF03401 Tripartite tricarboxylate transporter family receptor BB4755 PF00378 Enoyl-CoA hydratase/isomerase BB4756 PF00724 NADH:flavin oxidoreductase / NADH oxidase family BB4756 PF07992 Pyridine nucleotide-disulphide oxidoreductase BB4757 PF00378 Enoyl-CoA hydratase/isomerase BB4758 PF12802 MarR family BB4759 PF01012 Electron transfer flavoprotein domain BB4760 PF00766 Electron transfer flavoprotein FAD-binding domain BB4760 PF01012 Electron transfer flavoprotein domain BB4761 PF00593 TonB dependent receptor BB4761 PF07715 TonB-dependent Receptor Plug Domain BB4762 PF03401 Tripartite tricarboxylate transporter family receptor BB4765 PF02515 CoA-transferase family III BB4766 PF00108 Thiolase, N-terminal domain BB4766 PF02803 Thiolase, C-terminal domain BB4767 PF13452 N-terminal half of MaoC dehydratase BB4768 PF02515 CoA-transferase family III BB4771 PF12697 Alpha/beta hydrolase family BB4772 PF00175 Oxidoreductase NAD-binding domain BB4772 PF00111 2Fe-2S iron-sulfur cluster binding domain BB4773 PF00355 Rieske [2Fe-2S] domain BB4775 PF00528 Binding-protein-dependent transport system inner membrane component BB4776 PF00005 ABC transporter BB4776 PF08402 TOBE domain BB4777 PF02894 Oxidoreductase family, C-terminal alpha/beta domain BB4777 PF01408 Oxidoreductase family, NAD-binding Rossmann fold BB4778 PF03737 Aldolase/RraA BB4781 PF03447 Homoserine dehydrogenase, NAD binding domain BB4781 PF01958 Domain of unknown function DUF108 BB4782 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB4782 PF03466 LysR substrate binding domain BB4785 PF03401 Tripartite tricarboxylate transporter family receptor BB4786 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB4786 PF03466 LysR substrate binding domain BB4787 PF09330 D-lactate dehydrogenase, membrane binding BB4787 PF01565 FAD binding domain BB4788 PF02770 Acyl-CoA dehydrogenase, middle domain BB4788 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BB4788 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BB4789 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BB4789 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BB4789 PF02770 Acyl-CoA dehydrogenase, middle domain BB4790 PF03401 Tripartite tricarboxylate transporter family receptor BB4791 PF07687 Peptidase dimerisation domain BB4791 PF01546 Peptidase family M20/M25/M40 BB4793 PF01042 Endoribonuclease L-PSP BB4795 PF08240 Alcohol dehydrogenase GroES-like domain BB4795 PF00107 Zinc-binding dehydrogenase BB4796 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB4796 PF03466 LysR substrate binding domain BB4797 PF13607 Succinyl-CoA ligase like flavodoxin domain BB4797 PF00583 Acetyltransferase (GNAT) family BB4797 PF13380 CoA binding domain BB4798 PF00378 Enoyl-CoA hydratase/isomerase BB4800 PF03401 Tripartite tricarboxylate transporter family receptor BB4801 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family BB4802 PF01380 SIS domain BB4803 PF01037 Lrp/AsnC ligand binding domain BB4804 PF02803 Thiolase, C-terminal domain BB4804 PF00108 Thiolase, N-terminal domain BB4805 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain BB4805 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain BB4805 PF00378 Enoyl-CoA hydratase/isomerase BB4806 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BB4806 PF02770 Acyl-CoA dehydrogenase, middle domain BB4806 PF12806 Acetyl-CoA dehydrogenase C-terminal like BB4806 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BB4807 PF03401 Tripartite tricarboxylate transporter family receptor BB4808 PF13380 CoA binding domain BB4808 PF00583 Acetyltransferase (GNAT) family BB4808 PF13607 Succinyl-CoA ligase like flavodoxin domain BB4811 PF00384 Molybdopterin oxidoreductase BB4811 PF01568 Molydopterin dinucleotide binding domain BB4813 PF12833 Helix-turn-helix domain BB4813 PF06445 GyrI-like small molecule binding domain BB4815 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain BB4815 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain BB4815 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain BB4816 PF07690 Major Facilitator Superfamily BB4817 PF12804 MobA-like NTP transferase domain BB4817 PF14602 Hexapeptide repeat of succinyl-transferase BB4817 PF00132 Bacterial transferase hexapeptide (six repeats) BB4821 PF02630 SCO1/SenC BB4822 PF01040 UbiA prenyltransferase family BB4823 PF02628 Cytochrome oxidase assembly protein BB4827 PF00510 Cytochrome c oxidase subunit III BB4830 PF00115 Cytochrome C and Quinol oxidase polypeptide I BB4831 PF00116 Cytochrome C oxidase subunit II, periplasmic domain BB4831 PF02790 Cytochrome C oxidase subunit II, transmembrane domain BB4833 PF00999 Sodium/hydrogen exchanger family BB4834 PF00149 Calcineurin-like phosphoesterase BB4835 PF04542 Sigma-70 region 2 BB4835 PF00140 Sigma-70 factor, region 1.2 BB4835 PF04545 Sigma-70, region 4 BB4837 PF00756 Putative esterase BB4838 PF08240 Alcohol dehydrogenase GroES-like domain BB4838 PF00107 Zinc-binding dehydrogenase BB4840 PF00310 Glutamine amidotransferases class-II BB4840 PF01645 Conserved region in glutamate synthase BB4840 PF01493 GXGXG motif BB4840 PF04898 Glutamate synthase central domain BB4841 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster BB4841 PF07992 Pyridine nucleotide-disulphide oxidoreductase BB4842 PF03922 OmpW family BB4843 PF03401 Tripartite tricarboxylate transporter family receptor BB4844 PF00005 ABC transporter BB4845 PF02405 Permease MlaE BB4846 PF02470 MlaD protein BB4847 PF04333 MlaA lipoprotein BB4849 PF00005 ABC transporter BB4850 PF01061 ABC-2 type transporter BB4852 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) BB4853 PF01634 ATP phosphoribosyltransferase BB4854 PF00815 Histidinol dehydrogenase BB4855 PF00155 Aminotransferase class I and II BB4856 PF00475 Imidazoleglycerol-phosphate dehydratase BB4857 PF00117 Glutamine amidotransferase class-I BB4858 PF00977 Histidine biosynthesis protein BB4859 PF00977 Histidine biosynthesis protein BB4860 PF01502 Phosphoribosyl-AMP cyclohydrolase BB4861 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase BB4862 PF01230 HIT domain BB4863 PF02416 mttA/Hcf106 family BB4864 PF02416 mttA/Hcf106 family BB4865 PF00902 Sec-independent protein translocase protein (TatC) BB4867 PF13180 PDZ domain BB4868 PF01784 NIF3 (NGG1p interacting factor 3) BB4869 PF01741 Large-conductance mechanosensitive channel, MscL BB4870 PF00355 Rieske [2Fe-2S] domain BB4870 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal BB4871 PF00032 Cytochrome b(C-terminal)/b6/petD BB4871 PF00033 Cytochrome b/b6/petB BB4872 PF02167 Cytochrome C1 family BB4873 PF02798 Glutathione S-transferase, N-terminal domain BB4873 PF00043 Glutathione S-transferase, C-terminal domain BB4874 PF04386 Stringent starvation protein B BB4876 PF03401 Tripartite tricarboxylate transporter family receptor BB4877 PF02129 X-Pro dipeptidyl-peptidase (S15 family) BB4878 PF04909 Amidohydrolase BB4879 PF03466 LysR substrate binding domain BB4879 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB4880 PF07992 Pyridine nucleotide-disulphide oxidoreductase BB4881 PF09339 IclR helix-turn-helix domain BB4884 PF02515 CoA-transferase family III BB4885 PF03401 Tripartite tricarboxylate transporter family receptor BB4886 PF02515 CoA-transferase family III BB4889 PF03401 Tripartite tricarboxylate transporter family receptor BB4890 PF02917 Pertussis toxin, subunit 1 BB4891 PF02918 Pertussis toxin, subunit 2 and 3, C-terminal domain BB4891 PF03440 Aerolysin/Pertussis toxin (APT) domain BB4892 PF09275 Pertussis toxin S4 subunit BB4893 PF09276 Pertussis toxin S5 subunit BB4894 PF02918 Pertussis toxin, subunit 2 and 3, C-terminal domain BB4894 PF03440 Aerolysin/Pertussis toxin (APT) domain BB4895 PF04956 TrbC/VIRB2 family BB4896 PF05101 Type IV secretory pathway, VirB3-like protein BB4897 PF03135 CagE, TrbE, VirB family, component of type IV transporter system BB4898 PF04610 TrbL/VirB6 plasmid conjugal transfer protein BB4899 PF04335 VirB8 protein BB4900 PF03524 Conjugal transfer protein BB4901 PF03743 Bacterial conjugation TrbI-like protein BB4902 PF00437 Type II/IV secretion system protein BB4903 PF00892 EamA-like transporter family BB4907 PF10396 GTP-binding protein TrmE N-terminus BB4907 PF12631 MnmE helical domain BB4907 PF01926 50S ribosome-binding GTPase BB4908 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BB4910 PF12911 N-terminal TM domain of oligopeptide transport permease C BB4910 PF00528 Binding-protein-dependent transport system inner membrane component BB4911 PF00005 ABC transporter BB4911 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BB4912 PF04536 TPM domain BB4914 PF00271 Helicase conserved C-terminal domain BB4914 PF00270 DEAD/DEAH box helicase BB4915 PF01810 LysE type translocator BB4916 PF00009 Elongation factor Tu GTP binding domain BB4916 PF03144 Elongation factor Tu domain 2 BB4916 PF16658 Class II release factor RF3, C-terminal domain BB4918 PF00210 Ferritin-like domain BB4920 PF03466 LysR substrate binding domain BB4920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family BB4922 PF04552 Sigma-54, DNA binding domain BB4922 PF00309 Sigma-54 factor, Activator interacting domain (AID) BB4922 PF04963 Sigma-54 factor, core binding domain BB4924 PF08502 LeuA allosteric (dimerisation) domain BB4924 PF00682 HMGL-like BB4925 PF01425 Amidase BB4926 PF00356 Bacterial regulatory proteins, lacI family BB4929 PF00528 Binding-protein-dependent transport system inner membrane component BB4930 PF12857 TOBE-like domain BB4930 PF00005 ABC transporter BB4931 PF00149 Calcineurin-like phosphoesterase BB4932 PF17912 MalK OB fold domain BB4932 PF00005 ABC transporter BB4933 PF13416 Bacterial extracellular solute-binding protein BB4934 PF00528 Binding-protein-dependent transport system inner membrane component BB4935 PF00528 Binding-protein-dependent transport system inner membrane component BB4938 PF03485 Arginyl tRNA synthetase N terminal domain BB4938 PF05746 DALR anticodon binding domain BB4938 PF00750 tRNA synthetases class I (R) BB4940 PF00085 Thioredoxin BB4940 PF01323 DSBA-like thioredoxin domain BB4941 PF01053 Cys/Met metabolism PLP-dependent enzyme BB4942 PF01810 LysE type translocator BB4944 PF00376 MerR family regulatory protein BB4944 PF09278 MerR, DNA binding BB4945 PF00441 Acyl-CoA dehydrogenase, C-terminal domain BB4945 PF02771 Acyl-CoA dehydrogenase, N-terminal domain BB4945 PF02770 Acyl-CoA dehydrogenase, middle domain BB4946 PF06315 Isocitrate dehydrogenase kinase/phosphatase (AceK) BB4947 PF00108 Thiolase, N-terminal domain BB4947 PF02803 Thiolase, C-terminal domain BB4948 PF01039 Carboxyl transferase domain BB4949 PF02785 Biotin carboxylase C-terminal domain BB4949 PF00289 Biotin carboxylase, N-terminal domain BB4949 PF00364 Biotin-requiring enzyme BB4949 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain BB4951 PF00202 Aminotransferase class-III BB4952 PF03401 Tripartite tricarboxylate transporter family receptor BB4953 PF14031 Putative serine dehydratase domain BB4953 PF01168 Alanine racemase, N-terminal domain BB4954 PF16868 NMT1-like family BB4956 PF07715 TonB-dependent Receptor Plug Domain BB4956 PF00593 TonB dependent receptor BB4957 PF04361 Protein of unknown function (DUF494) BB4958 PF00749 tRNA synthetases class I (E and Q), catalytic domain BB4960 PF01751 Toprim domain BB4960 PF01131 DNA topoisomerase BB4962 PF00005 ABC transporter BB4963 PF00528 Binding-protein-dependent transport system inner membrane component BB4965 PF00171 Aldehyde dehydrogenase family BB4967 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain BB4967 PF00205 Thiamine pyrophosphate enzyme, central domain BB4967 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain BB4968 PF01037 Lrp/AsnC ligand binding domain BB4969 PF01062 Bestrophin, RFP-TM, chloride channel BB4971 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase BB4975 PF02558 Ketopantoate reductase PanE/ApbA BB4975 PF08546 Ketopantoate reductase PanE/ApbA C terminal BB4977 PF13673 Acetyltransferase (GNAT) domain BB4980 PF01070 FMN-dependent dehydrogenase BB4981 PF00708 Acylphosphatase BB4982 PF03401 Tripartite tricarboxylate transporter family receptor BB4983 PF01425 Amidase BB4984 PF09339 IclR helix-turn-helix domain BB4984 PF01614 Bacterial transcriptional regulator BB4987 PF00986 DNA gyrase B subunit, carboxyl terminus BB4987 PF18053 DNA gyrase B subunit insert domain BB4987 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BB4987 PF01751 Toprim domain BB4987 PF00204 DNA gyrase B BB4988 PF02767 DNA polymerase III beta subunit, central domain BB4988 PF02768 DNA polymerase III beta subunit, C-terminal domain BB4988 PF00712 DNA polymerase III beta subunit, N-terminal domain BB4989 PF00308 Bacterial dnaA protein BB4989 PF08299 Bacterial dnaA protein helix-turn-helix BB4989 PF11638 DnaA N-terminal domain BB4990 PF00468 Ribosomal protein L34 BB4991 PF00825 Ribonuclease P BB4992 PF01809 Putative membrane protein insertion efficiency factor BB4993 PF14849 YidC periplasmic domain BB4993 PF02096 60Kd inner membrane protein BB4994 PF06628 Catalase-related immune-responsive BB4994 PF00199 Catalase BB4995 PF00528 Binding-protein-dependent transport system inner membrane component BB4996 PF00005 ABC transporter BB4998 PF02668 Taurine catabolism dioxygenase TauD, TfdA family BB4999 PF01546 Peptidase family M20/M25/M40 BB4999 PF07687 Peptidase dimerisation domain BB5000 PF00005 ABC transporter BB5000 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BB5001 PF08352 Oligopeptide/dipeptide transporter, C-terminal region BB5001 PF00005 ABC transporter BB5002 PF12911 N-terminal TM domain of oligopeptide transport permease C BB5002 PF00528 Binding-protein-dependent transport system inner membrane component BB5003 PF00528 Binding-protein-dependent transport system inner membrane component BB5004 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle BB5005 PF10396 GTP-binding protein TrmE N-terminus BB5005 PF12631 MnmE helical domain BB5005 PF01926 50S ribosome-binding GTPase BB5007 PF00072 Response regulator receiver domain BB5007 PF00486 Transcriptional regulatory protein, C terminal BB5008 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase BB5008 PF00512 His Kinase A (phospho-acceptor) domain BB5008 PF00672 HAMP domain BB5011 PF01970 Tripartite tricarboxylate transporter TctA family BB5012 PF00155 Aminotransferase class I and II BB5013 PF00313 'Cold-shock' DNA-binding domain