BB0001 SM01228 BB0001 BB0005 SM00470 ParB-like nuclease domain BB0006 SM00870 BB0006 BB0009 SM00738 In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold. BB0009 SM00739 KOW (Kyprides, Ouzounis, Woese) motif. BB0010 SM00649 Ribosomal protein L11/L12 BB0015 SM00663 RNA polymerase I subunit A N-terminus BB0018 SM00387 Histidine kinase-like ATPases BB0018 SM01080 BB0018 BB0020 SM00448 cheY-homologous receiver domain BB0020 SM00862 Transcriptional regulatory protein, C terminal BB0021 SM00448 cheY-homologous receiver domain BB0021 SM00862 Transcriptional regulatory protein, C terminal BB0026 SM00838 Elongation factor G C-terminus BB0026 SM00889 Elongation factor G, domain IV BB0028 SM01403 BB0028 BB0032 SM01382 BB0032 BB0032 SM01383 BB0032 BB0035 SM00322 K homology RNA-binding domain BB0041 SM01374 BB0041 BB0056 SM00363 S4 RNA-binding domain BB0056 SM01390 BB0056 BB0057 SM00662 RNA polymerases D BB0063 SM01004 Delta-aminolevulinic acid dehydratase BB0069 SM01219 BB0069 BB0073 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BB0082 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB0082 SM00866 BB0082 BB0091 SM00382 ATPases associated with a variety of cellular activities BB0096 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB0096 SM00895 BB0096 BB0101 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BB0102 SM01130 BB0102 BB0113 SM00834 Putative regulatory protein BB0117 SM00155 Phospholipase D. Active site motifs. BB0131 SM00382 ATPases associated with a variety of cellular activities BB0132 SM00382 ATPases associated with a variety of cellular activities BB0140 SM00460 Transglutaminase/protease-like homologues BB0164 SM00382 ATPases associated with a variety of cellular activities BB0168 SM00936 Penicillin-binding protein 5, C-terminal domain BB0172 SM00729 Elongator protein 3, MiaB family, Radical SAM BB0178 SM00382 ATPases associated with a variety of cellular activities BB0178 SM01086 C-terminal, D2-small domain, of ClpB protein BB0181 SM00833 Cobalamin synthesis protein cobW C-terminal domain BB0183 SM00382 ATPases associated with a variety of cellular activities BB0198 SM00996 S-adenosyl-L-homocysteine hydrolase BB0198 SM00997 S-adenosyl-L-homocysteine hydrolase, NAD binding domain BB0209 SM00487 DEAD-like helicases superfamily BB0209 SM00490 helicase superfamily c-terminal domain BB0210 SM00986 Uracil DNA glycosylase superfamily BB0210 SM00987 UreE urease accessory protein, C-terminal domain BB0214 SM00342 helix_turn_helix, arabinose operon control protein BB0223 SM00849 Metallo-beta-lactamase superfamily BB0224 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BB0228 SM00382 ATPases associated with a variety of cellular activities BB0232 SM00382 ATPases associated with a variety of cellular activities BB0234 SM00100 Cyclic nucleotide-monophosphate binding domain BB0241 SM00062 Bacterial periplasmic substrate-binding proteins BB0245 SM00344 helix_turn_helix ASNC type BB0254 SM00729 Elongator protein 3, MiaB family, Radical SAM BB0258 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB0258 SM00895 BB0258 BB0264 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BB0264 SM00387 Histidine kinase-like ATPases BB0264 SM00388 His Kinase A (phosphoacceptor) domain BB0265 SM00448 cheY-homologous receiver domain BB0268 SM00347 helix_turn_helix multiple antibiotic resistance protein BB0281 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BB0285 SM00382 ATPases associated with a variety of cellular activities BB0297 SM00450 Rhodanese Homology Domain BB0298 SM00855 Phosphoglycerate mutase family BB0300 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BB0300 SM00245 tail specific protease BB0302 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB0302 SM00895 BB0302 BB0308 SM00530 Helix-turn-helix XRE-family like proteins BB0309 SM00530 Helix-turn-helix XRE-family like proteins BB0310 SM00862 Transcriptional regulatory protein, C terminal BB0311 SM00359 Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase BB0325 SM00382 ATPases associated with a variety of cellular activities BB0329 SM00062 Bacterial periplasmic substrate-binding proteins BB0332 SM00382 ATPases associated with a variety of cellular activities BB0338 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB0338 SM00895 BB0338 BB0340 SM00869 Autotransporter beta-domain BB0341 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB0341 SM00895 BB0341 BB0342 SM00829 Enoylreductase BB0346 SM00382 ATPases associated with a variety of cellular activities BB0354 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB0354 SM00866 BB0354 BB0360 SM00346 helix_turn_helix isocitrate lyase regulation BB0361 SM00882 Coenzyme A transferase BB0362 SM00882 Coenzyme A transferase BB0369 SM00382 ATPases associated with a variety of cellular activities BB0370 SM00382 ATPases associated with a variety of cellular activities BB0372 SM00886 Stress responsive A/B Barrel Domain BB0378 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BB0378 SM00387 Histidine kinase-like ATPases BB0378 SM00388 His Kinase A (phosphoacceptor) domain BB0379 SM00448 cheY-homologous receiver domain BB0379 SM00862 Transcriptional regulatory protein, C terminal BB0384 SM00937 BB0384 BB0390 SM01092 CO dehydrogenase flavoprotein C-terminal domain BB0392 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BB0398 SM01321 BB0398 BB0399 SM00382 ATPases associated with a variety of cellular activities BB0400 SM00382 ATPases associated with a variety of cellular activities BB0406 SM00947 Carbonic anhydrase BB0413 SM00882 Coenzyme A transferase BB0414 SM00882 Coenzyme A transferase BB0415 SM00346 helix_turn_helix isocitrate lyase regulation BB0419 SM00869 Autotransporter beta-domain BB0428 SM00342 helix_turn_helix, arabinose operon control protein BB0430 SM00342 helix_turn_helix, arabinose operon control protein BB0432 SM00858 BB0432 BB0444 SM00244 prohibitin homologues BB0446 SM01119 BB0446 BB0450 SM00869 Autotransporter beta-domain BB0452 SM00869 Autotransporter beta-domain BB0456 SM00346 helix_turn_helix isocitrate lyase regulation BB0460 SM00829 Enoylreductase BB0468 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BB0470 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB0470 SM00895 BB0470 BB0472 SM00357 Cold shock protein domain BB0479 SM00833 Cobalamin synthesis protein cobW C-terminal domain BB0501 SM00387 Histidine kinase-like ATPases BB0503 SM00644 BB0503 BB0506 SM00382 ATPases associated with a variety of cellular activities BB0506 SM00962 SRP54-type protein, GTPase domain BB0506 SM00963 SRP54-type protein, helical bundle domain BB0507 SM00257 Lysin motif BB0516 SM00346 helix_turn_helix isocitrate lyase regulation BB0528 SM00530 Helix-turn-helix XRE-family like proteins BB0532 SM00881 CoA binding domain BB0537 SM00450 Rhodanese Homology Domain BB0543 SM00346 helix_turn_helix isocitrate lyase regulation BB0543 SM00419 helix_turn_helix, cAMP Regulatory protein BB0548 SM00354 helix_turn _helix lactose operon repressor BB0571 SM00382 ATPases associated with a variety of cellular activities BB0572 SM00382 ATPases associated with a variety of cellular activities BB0582 SM00822 BB0582 BB0601 SM00382 ATPases associated with a variety of cellular activities BB0602 SM00382 ATPases associated with a variety of cellular activities BB0608 SM00346 helix_turn_helix isocitrate lyase regulation BB0609 SM00346 helix_turn_helix isocitrate lyase regulation BB0610 SM00878 Biotin carboxylase C-terminal domain BB0613 SM00822 BB0613 BB0616 SM00346 helix_turn_helix isocitrate lyase regulation BB0620 SM00893 Electron transfer flavoprotein domain BB0621 SM00893 Electron transfer flavoprotein domain BB0644 SM00382 ATPases associated with a variety of cellular activities BB0647 SM00346 helix_turn_helix isocitrate lyase regulation BB0648 SM00100 Cyclic nucleotide-monophosphate binding domain BB0648 SM00419 helix_turn_helix, cAMP Regulatory protein BB0655 SM00346 helix_turn_helix isocitrate lyase regulation BB0667 SM00881 CoA binding domain BB0676 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB0676 SM00895 BB0676 BB0682 SM00833 Cobalamin synthesis protein cobW C-terminal domain BB0683 SM00320 WD40 repeats BB0685 SM00346 helix_turn_helix isocitrate lyase regulation BB0686 SM01130 BB0686 BB0688 SM00062 Bacterial periplasmic substrate-binding proteins BB0690 SM00382 ATPases associated with a variety of cellular activities BB0692 SM00346 helix_turn_helix isocitrate lyase regulation BB0702 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB0702 SM00895 BB0702 BB0707 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB0711 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BB0713 SM00346 helix_turn_helix isocitrate lyase regulation BB0725 SM00346 helix_turn_helix isocitrate lyase regulation BB0746 SM00530 Helix-turn-helix XRE-family like proteins BB0758 SM00382 ATPases associated with a variety of cellular activities BB0759 SM00382 ATPases associated with a variety of cellular activities BB0762 SM00822 BB0762 BB0770 SM00346 helix_turn_helix isocitrate lyase regulation BB0774 SM00028 Tetratricopeptide repeats BB0774 SM01043 Bacterial transcriptional activator domain BB0775 SM00342 helix_turn_helix, arabinose operon control protein BB0782 SM00382 ATPases associated with a variety of cellular activities BB0784 SM00965 Secretin and TonB N terminus short domain BB0791 SM00382 ATPases associated with a variety of cellular activities BB0810 SM00382 ATPases associated with a variety of cellular activities BB0810 SM01086 C-terminal, D2-small domain, of ClpB protein BB0821 SM00869 Autotransporter beta-domain BB0822 SM00155 Phospholipase D. Active site motifs. BB0823 SM00382 ATPases associated with a variety of cellular activities BB0833 SM00344 helix_turn_helix ASNC type BB0833 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB0836 SM00862 Transcriptional regulatory protein, C terminal BB0839 SM00450 Rhodanese Homology Domain BB0857 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB0857 SM00895 BB0857 BB0864 SM00382 ATPases associated with a variety of cellular activities BB0870 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB0876 SM00984 UDP binding domain BB0888 SM00448 cheY-homologous receiver domain BB0888 SM00862 Transcriptional regulatory protein, C terminal BB0889 SM00387 Histidine kinase-like ATPases BB0889 SM00388 His Kinase A (phosphoacceptor) domain BB0896 SM00849 Metallo-beta-lactamase superfamily BB0897 SM00898 Formamidopyrimidine-DNA glycosylase N-terminal domain BB0897 SM01232 BB0897 BB0898 SM00028 Tetratricopeptide repeats BB0901 SM01400 BB0901 BB0908 SM00487 DEAD-like helicases superfamily BB0908 SM00490 helicase superfamily c-terminal domain BB0910 SM00382 ATPases associated with a variety of cellular activities BB0916 SM00869 Autotransporter beta-domain BB0917 SM00862 Transcriptional regulatory protein, C terminal BB0922 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB0922 SM00895 BB0922 BB0926 SM00919 Malic enzyme, NAD binding domain BB0926 SM01274 BB0926 BB0930 SM00382 ATPases associated with a variety of cellular activities BB0936 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BB0943 SM00382 ATPases associated with a variety of cellular activities BB0943 SM00962 SRP54-type protein, GTPase domain BB0943 SM00963 SRP54-type protein, helical bundle domain BB0944 SM00880 BB0944 BB0944 SM01118 BB0944 BB0947 SM00382 ATPases associated with a variety of cellular activities BB0949 SM00346 helix_turn_helix isocitrate lyase regulation BB0957 SM00934 Orotidine 5'-phosphate decarboxylase / HUMPS family BB0963 SM00883 Chaperonin 10 Kd subunit BB0972 SM00346 helix_turn_helix isocitrate lyase regulation BB0991 SM00267 diguanylate cyclase BB0996 SM00382 ATPases associated with a variety of cellular activities BB1005 SM00382 ATPases associated with a variety of cellular activities BB1014 SM01329 BB1014 BB1019 SM00382 ATPases associated with a variety of cellular activities BB1043 SM00382 ATPases associated with a variety of cellular activities BB1058 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB1058 SM00895 BB1058 BB1070 SM00849 Metallo-beta-lactamase superfamily BB1072 SM00382 ATPases associated with a variety of cellular activities BB1073 SM00062 Bacterial periplasmic substrate-binding proteins BB1074 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB1074 SM00895 BB1074 BB1100 SM00831 Cation transporter/ATPase, N-terminus BB1101 SM00387 Histidine kinase-like ATPases BB1101 SM00388 His Kinase A (phosphoacceptor) domain BB1102 SM00421 helix_turn_helix, Lux Regulon BB1102 SM00448 cheY-homologous receiver domain BB1108 SM01130 BB1108 BB1110 SM00903 Flavin reductase like domain BB1111 SM00346 helix_turn_helix isocitrate lyase regulation BB1120 SM00421 helix_turn_helix, Lux Regulon BB1120 SM00448 cheY-homologous receiver domain BB1122 SM00091 PAS domain BB1122 SM00387 Histidine kinase-like ATPases BB1138 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB1138 SM00866 BB1138 BB1141 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB1141 SM00895 BB1141 BB1147 SM00382 ATPases associated with a variety of cellular activities BB1150 SM00346 helix_turn_helix isocitrate lyase regulation BB1157 SM00382 ATPases associated with a variety of cellular activities BB1158 SM00382 ATPases associated with a variety of cellular activities BB1161 SM00248 ankyrin repeats BB1169 SM00344 helix_turn_helix ASNC type BB1174 SM00382 ATPases associated with a variety of cellular activities BB1177 SM00829 Enoylreductase BB1181 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BB1184 SM00052 Putative diguanylate phosphodiesterase BB1184 SM00267 diguanylate cyclase BB1186 SM00327 von Willebrand factor (vWF) type A domain BB1186 SM00736 Dystroglycan-type cadherin-like domains. BB1187 SM00421 helix_turn_helix, Lux Regulon BB1189 SM00382 ATPases associated with a variety of cellular activities BB1193 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BB1200 SM00822 BB1200 BB1208 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BB1220 SM00267 diguanylate cyclase BB1234 SM00342 helix_turn_helix, arabinose operon control protein BB1235 SM00478 endonuclease III BB1241 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB1243 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BB1248 SM00382 ATPases associated with a variety of cellular activities BB1248 SM00464 Found in ATP-dependent protease La (LON) BB1258 SM00346 helix_turn_helix isocitrate lyase regulation BB1262 SM00342 helix_turn_helix, arabinose operon control protein BB1270 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BB1281 SM00387 Histidine kinase-like ATPases BB1282 SM00448 cheY-homologous receiver domain BB1287 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BB1297 SM00257 Lysin motif BB1321 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BB1321 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BB1322 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BB1325 SM00729 Elongator protein 3, MiaB family, Radical SAM BB1326 SM00852 Probable molybdopterin binding domain BB1327 SM00852 Probable molybdopterin binding domain BB1337 SM00729 Elongator protein 3, MiaB family, Radical SAM BB1337 SM00876 Biotin and Thiamin Synthesis associated domain BB1345 SM00833 Cobalamin synthesis protein cobW C-terminal domain BB1351 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB1351 SM00895 BB1351 BB1354 SM01091 Transporter associated domain BB1357 SM00729 Elongator protein 3, MiaB family, Radical SAM BB1358 SM00014 Acid phosphatase homologues BB1361 SM01323 BB1361 BB1366 SM00869 Autotransporter beta-domain BB1376 SM00919 Malic enzyme, NAD binding domain BB1376 SM01274 BB1376 BB1380 SM00861 Transketolase, pyrimidine binding domain BB1381 SM00846 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain BB1396 SM00852 Probable molybdopterin binding domain BB1400 SM00316 Ribosomal protein S1-like RNA-binding domain BB1403 SM00834 Putative regulatory protein BB1406 SM00421 helix_turn_helix, Lux Regulon BB1412 SM00530 Helix-turn-helix XRE-family like proteins BB1415 SM01001 AIR carboxylase BB1418 SM00062 Bacterial periplasmic substrate-binding proteins BB1419 SM00346 helix_turn_helix isocitrate lyase regulation BB1421 SM00062 Bacterial periplasmic substrate-binding proteins BB1421 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BB1423 SM00382 ATPases associated with a variety of cellular activities BB1438 SM00382 ATPases associated with a variety of cellular activities BB1440 SM00493 BB1440 BB1442 SM00062 Bacterial periplasmic substrate-binding proteins BB1443 SM00382 ATPases associated with a variety of cellular activities BB1446 SM01097 Carbamoyl-phosphate synthase small chain, CPSase domain BB1447 SM00851 MGS-like domain BB1447 SM01096 Carbamoyl-phosphate synthetase large chain, oligomerisation domain BB1448 SM00822 BB1448 BB1449 SM00855 Phosphoglycerate mutase family BB1451 SM00382 ATPases associated with a variety of cellular activities BB1456 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BB1456 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BB1458 SM01103 BB1458 BB1460 SM00382 ATPases associated with a variety of cellular activities BB1469 SM00382 ATPases associated with a variety of cellular activities BB1474 SM00530 Helix-turn-helix XRE-family like proteins BB1478 SM00947 Carbonic anhydrase BB1483 SM01236 BB1483 BB1484 SM00382 ATPases associated with a variety of cellular activities BB1485 SM00382 ATPases associated with a variety of cellular activities BB1489 SM00382 ATPases associated with a variety of cellular activities BB1490 SM00382 ATPases associated with a variety of cellular activities BB1495 SM00346 helix_turn_helix isocitrate lyase regulation BB1506 SM00382 ATPases associated with a variety of cellular activities BB1507 SM00382 ATPases associated with a variety of cellular activities BB1510 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB1510 SM00895 BB1510 BB1511 SM00886 Stress responsive A/B Barrel Domain BB1512 SM00822 BB1512 BB1519 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB1519 SM00895 BB1519 BB1520 SM00344 helix_turn_helix ASNC type BB1523 SM00062 Bacterial periplasmic substrate-binding proteins BB1526 SM00382 ATPases associated with a variety of cellular activities BB1541 SM00450 Rhodanese Homology Domain BB1547 SM00382 ATPases associated with a variety of cellular activities BB1548 SM00382 ATPases associated with a variety of cellular activities BB1556 SM00382 ATPases associated with a variety of cellular activities BB1571 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB1571 SM00866 BB1571 BB1572 SM00878 Biotin carboxylase C-terminal domain BB1576 SM00881 CoA binding domain BB1595 SM00382 ATPases associated with a variety of cellular activities BB1596 SM00382 ATPases associated with a variety of cellular activities BB1600 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB1600 SM00895 BB1600 BB1628 SM00382 ATPases associated with a variety of cellular activities BB1642 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BB1642 SM00331 Sigma factor PP2C-like phosphatases BB1642 SM01049 BB1642 BB1644 SM01005 Alanine racemase, C-terminal domain BB1647 SM00155 Phospholipase D. Active site motifs. BB1649 SM00869 Autotransporter beta-domain BB1656 SM01130 BB1656 BB1659 SM00558 A domain family that is part of the cupin metalloenzyme superfamily. BB1660 SM00533 DNA-binding domain of DNA mismatch repair MUTS family BB1660 SM00534 ATPase domain of DNA mismatch repair MUTS family BB1678 SM00530 Helix-turn-helix XRE-family like proteins BB1726 SM00346 helix_turn_helix isocitrate lyase regulation BB1730 SM01091 Transporter associated domain BB1734 SM00028 Tetratricopeptide repeats BB1735 SM00840 BB1735 BB1736 SM00478 endonuclease III BB1755 SM00382 ATPases associated with a variety of cellular activities BB1757 SM00346 helix_turn_helix isocitrate lyase regulation BB1758 SM00881 CoA binding domain BB1764 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BB1769 SM00028 Tetratricopeptide repeats BB1771 SM00347 helix_turn_helix multiple antibiotic resistance protein BB1774 SM00382 ATPases associated with a variety of cellular activities BB1775 SM00382 ATPases associated with a variety of cellular activities BB1776 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BB1783 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BB1786 SM00347 helix_turn_helix multiple antibiotic resistance protein BB1798 SM00421 helix_turn_helix, Lux Regulon BB1799 SM00421 helix_turn_helix, Lux Regulon BB1808 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB1812 SM00318 Staphylococcal nuclease homologues BB1816 SM00382 ATPases associated with a variety of cellular activities BB1817 SM00347 helix_turn_helix multiple antibiotic resistance protein BB1825 SM00858 BB1825 BB1831 SM00028 Tetratricopeptide repeats BB1834 SM00382 ATPases associated with a variety of cellular activities BB1840 SM00841 Elongation factor P, C-terminal BB1840 SM01185 BB1840 BB1851 SM00479 BB1851 BB1864 SM00869 Autotransporter beta-domain BB1870 SM01209 BB1870 BB1870 SM01210 BB1870 BB1881 SM00382 ATPases associated with a variety of cellular activities BB1885 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB1886 SM01329 BB1886 BB1890 SM00347 helix_turn_helix multiple antibiotic resistance protein BB1893 SM00829 Enoylreductase BB1896 SM00450 Rhodanese Homology Domain BB1899 SM00382 ATPases associated with a variety of cellular activities BB1905 SM00965 Secretin and TonB N terminus short domain BB1909 SM00346 helix_turn_helix isocitrate lyase regulation BB1912 SM00861 Transketolase, pyrimidine binding domain BB1919 SM00382 ATPases associated with a variety of cellular activities BB1922 SM00670 Large family of predicted nucleotide-binding domains BB1932 SM00528 Domain in histone-like proteins of HNS family BB1936 SM00912 haemagglutination activity domain BB1943 SM00342 helix_turn_helix, arabinose operon control protein BB1946 SM01002 Alanine dehydrogenase/PNT, C-terminal domain BB1946 SM01003 Alanine dehydrogenase/PNT, N-terminal domain BB1960 SM00267 diguanylate cyclase BB1961 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BB1969 SM00155 Phospholipase D. Active site motifs. BB1974 SM01144 BB1974 BB1975 SM00316 Ribosomal protein S1-like RNA-binding domain BB1975 SM00357 Cold shock protein domain BB1975 SM00955 BB1975 BB1976 SM00967 RNA 2'-O ribose methyltransferase substrate binding BB1978 SM00702 Prolyl 4-hydroxylase alpha subunit homologues. BB1979 SM00411 bacterial (prokaryotic) histone like domain BB1983 SM00448 cheY-homologous receiver domain BB1983 SM00862 Transcriptional regulatory protein, C terminal BB1984 SM00387 Histidine kinase-like ATPases BB1984 SM00388 His Kinase A (phosphoacceptor) domain BB1995 SM01130 BB1995 BB1996 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB1996 SM00895 BB1996 BB2004 SM00822 BB2004 BB2016 SM00357 Cold shock protein domain BB2018 SM01359 BB2018 BB2018 SM01360 BB2018 BB2020 SM00382 ATPases associated with a variety of cellular activities BB2020 SM01086 C-terminal, D2-small domain, of ClpB protein BB2028 SM00382 ATPases associated with a variety of cellular activities BB2029 SM00382 ATPases associated with a variety of cellular activities BB2033 SM00869 Autotransporter beta-domain BB2035 SM00938 Nitrogen regulatory protein P-II BB2037 SM00382 ATPases associated with a variety of cellular activities BB2041 SM00873 B3/4 domain BB2041 SM00874 tRNA synthetase B5 domain BB2041 SM00896 Ferredoxin-fold anticodon binding domain BB2042 SM00411 bacterial (prokaryotic) histone like domain BB2043 SM00422 helix_turn_helix, mercury resistance BB2051 SM00344 helix_turn_helix ASNC type BB2054 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB2068 SM00822 BB2068 BB2071 SM00382 ATPases associated with a variety of cellular activities BB2074 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BB2074 SM00387 Histidine kinase-like ATPases BB2074 SM00388 His Kinase A (phosphoacceptor) domain BB2075 SM00448 cheY-homologous receiver domain BB2075 SM00862 Transcriptional regulatory protein, C terminal BB2076 SM00382 ATPases associated with a variety of cellular activities BB2082 SM00881 CoA binding domain BB2096 SM00858 BB2096 BB2098 SM00240 Forkhead associated domain BB2104 SM00116 Domain in cystathionine beta-synthase and other proteins. BB2108 SM00448 cheY-homologous receiver domain BB2108 SM00862 Transcriptional regulatory protein, C terminal BB2109 SM00052 Putative diguanylate phosphodiesterase BB2109 SM00267 diguanylate cyclase BB2109 SM00387 Histidine kinase-like ATPases BB2109 SM00388 His Kinase A (phosphoacceptor) domain BB2110 SM00052 Putative diguanylate phosphodiesterase BB2114 SM00852 Probable molybdopterin binding domain BB2121 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BB2128 SM00382 ATPases associated with a variety of cellular activities BB2132 SM01329 BB2132 BB2133 SM00859 Semialdehyde dehydrogenase, NAD binding domain BB2147 SM00729 Elongator protein 3, MiaB family, Radical SAM BB2149 SM00421 helix_turn_helix, Lux Regulon BB2149 SM00448 cheY-homologous receiver domain BB2150 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BB2160 SM00062 Bacterial periplasmic substrate-binding proteins BB2163 SM00382 ATPases associated with a variety of cellular activities BB2168 SM00344 helix_turn_helix ASNC type BB2173 SM00904 Riboflavin kinase BB2179 SM00965 Secretin and TonB N terminus short domain BB2180 SM00382 ATPases associated with a variety of cellular activities BB2246 SM00869 Autotransporter beta-domain BB2249 SM00357 Cold shock protein domain BB2251 SM00357 Cold shock protein domain BB2255 SM00382 ATPases associated with a variety of cellular activities BB2255 SM00994 ClpX C4-type zinc finger BB2255 SM01086 C-terminal, D2-small domain, of ClpB protein BB2256 SM00382 ATPases associated with a variety of cellular activities BB2256 SM00464 Found in ATP-dependent protease La (LON) BB2267 SM00882 Coenzyme A transferase BB2268 SM00882 Coenzyme A transferase BB2270 SM00869 Autotransporter beta-domain BB2273 SM00487 DEAD-like helicases superfamily BB2273 SM00490 helicase superfamily c-terminal domain BB2274 SM00226 Low molecular weight phosphatase family BB2279 SM00271 DnaJ molecular chaperone homology domain BB2285 SM00382 ATPases associated with a variety of cellular activities BB2289 SM00382 ATPases associated with a variety of cellular activities BB2294 SM00822 BB2294 BB2295 SM00937 BB2295 BB2299 SM00382 ATPases associated with a variety of cellular activities BB2301 SM00869 Autotransporter beta-domain BB2304 SM00849 Metallo-beta-lactamase superfamily BB2306 SM00481 DNA polymerase alpha chain like domain BB2311 SM01211 BB2311 BB2312 SM00912 haemagglutination activity domain BB2323 SM00421 helix_turn_helix, Lux Regulon BB2324 SM00869 Autotransporter beta-domain BB2326 SM00116 Domain in cystathionine beta-synthase and other proteins. BB2326 SM01240 BB2326 BB2340 SM00849 Metallo-beta-lactamase superfamily BB2340 SM01027 Beta-Casp domain BB2341 SM00342 helix_turn_helix, arabinose operon control protein BB2364 SM00382 ATPases associated with a variety of cellular activities BB2365 SM00354 helix_turn _helix lactose operon repressor BB2367 SM00422 helix_turn_helix, mercury resistance BB2372 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB2372 SM00866 BB2372 BB2377 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB2377 SM00895 BB2377 BB2382 SM00382 ATPases associated with a variety of cellular activities BB2387 SM00382 ATPases associated with a variety of cellular activities BB2395 SM00342 helix_turn_helix, arabinose operon control protein BB2400 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BB2403 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB2403 SM00895 BB2403 BB2407 SM00382 ATPases associated with a variety of cellular activities BB2413 SM00464 Found in ATP-dependent protease La (LON) BB2415 SM00342 helix_turn_helix, arabinose operon control protein BB2417 SM01008 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain BB2428 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB2447 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB2447 SM00895 BB2447 BB2450 SM00342 helix_turn_helix, arabinose operon control protein BB2451 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB2451 SM00895 BB2451 BB2455 SM00062 Bacterial periplasmic substrate-binding proteins BB2456 SM00382 ATPases associated with a variety of cellular activities BB2458 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB2458 SM00866 BB2458 BB2459 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BB2461 SM00822 BB2461 BB2470 SM00347 helix_turn_helix multiple antibiotic resistance protein BB2473 SM00342 helix_turn_helix, arabinose operon control protein BB2484 SM00419 helix_turn_helix, cAMP Regulatory protein BB2489 SM00822 BB2489 BB2493 SM00530 Helix-turn-helix XRE-family like proteins BB2501 SM00382 ATPases associated with a variety of cellular activities BB2503 SM00062 Bacterial periplasmic substrate-binding proteins BB2505 SM00422 helix_turn_helix, mercury resistance BB2510 SM00938 Nitrogen regulatory protein P-II BB2512 SM00363 S4 RNA-binding domain BB2520 SM00382 ATPases associated with a variety of cellular activities BB2522 SM01322 BB2522 BB2534 SM00421 helix_turn_helix, Lux Regulon BB2534 SM00448 cheY-homologous receiver domain BB2535 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BB2535 SM00091 PAS domain BB2535 SM00387 Histidine kinase-like ATPases BB2535 SM00388 His Kinase A (phosphoacceptor) domain BB2545 SM00448 cheY-homologous receiver domain BB2546 SM00073 Histidine Phosphotransfer domain BB2546 SM00260 Two component signalling adaptor domain BB2546 SM00387 Histidine kinase-like ATPases BB2546 SM01231 BB2546 BB2547 SM00260 Two component signalling adaptor domain BB2548 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BB2548 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BB2549 SM00138 Methyltransferase, chemotaxis proteins BB2550 SM00448 cheY-homologous receiver domain BB2551 SM00448 cheY-homologous receiver domain BB2555 SM00382 ATPases associated with a variety of cellular activities BB2555 SM00962 SRP54-type protein, GTPase domain BB2558 SM00858 BB2558 BB2567 SM00047 Lysozyme subfamily 2 BB2570 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BB2570 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BB2574 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BB2574 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BB2575 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BB2575 SM00091 PAS domain BB2575 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BB2575 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BB2585 SM00382 ATPases associated with a variety of cellular activities BB2603 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BB2612 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BB2614 SM00935 Outer membrane protein (OmpH-like) BB2625 SM00244 prohibitin homologues BB2626 SM00267 diguanylate cyclase BB2640 SM00248 ankyrin repeats BB2641 SM00346 helix_turn_helix isocitrate lyase regulation BB2642 SM00062 Bacterial periplasmic substrate-binding proteins BB2642 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BB2644 SM00382 ATPases associated with a variety of cellular activities BB2646 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BB2654 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB2654 SM00895 BB2654 BB2660 SM00267 diguanylate cyclase BB2664 SM00052 Putative diguanylate phosphodiesterase BB2664 SM00448 cheY-homologous receiver domain BB2671 SM01091 Transporter associated domain BB2676 SM01007 Class II Aldolase and Adducin N-terminal domain BB2681 SM00822 BB2681 BB2683 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BB2689 SM00878 Biotin carboxylase C-terminal domain BB2692 SM00347 helix_turn_helix multiple antibiotic resistance protein BB2699 SM00382 ATPases associated with a variety of cellular activities BB2700 SM00346 helix_turn_helix isocitrate lyase regulation BB2703 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB2703 SM00866 BB2703 BB2714 SM00382 ATPases associated with a variety of cellular activities BB2719 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB2719 SM00895 BB2719 BB2721 SM00530 Helix-turn-helix XRE-family like proteins BB2732 SM00327 von Willebrand factor (vWF) type A domain BB2733 SM00028 Tetratricopeptide repeats BB2733 SM00327 von Willebrand factor (vWF) type A domain BB2740 SM00421 helix_turn_helix, Lux Regulon BB2740 SM00448 cheY-homologous receiver domain BB2741 SM00869 Autotransporter beta-domain BB2742 SM00530 Helix-turn-helix XRE-family like proteins BB2758 SM00382 ATPases associated with a variety of cellular activities BB2759 SM00382 ATPases associated with a variety of cellular activities BB2761 SM00346 helix_turn_helix isocitrate lyase regulation BB2784 SM00418 helix_turn_helix, Arsenical Resistance Operon Repressor BB2787 SM00822 BB2787 BB2790 SM00086 Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain) BB2790 SM00091 PAS domain BB2790 SM00267 diguanylate cyclase BB2793 SM00244 prohibitin homologues BB2795 SM00382 ATPases associated with a variety of cellular activities BB2797 SM00062 Bacterial periplasmic substrate-binding proteins BB2797 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BB2800 SM00926 Molybdopterin oxidoreductase Fe4S4 domain BB2803 SM00382 ATPases associated with a variety of cellular activities BB2811 SM00028 Tetratricopeptide repeats BB2815 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BB2819 SM00354 helix_turn _helix lactose operon repressor BB2824 SM00881 CoA binding domain BB2825 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB2825 SM00895 BB2825 BB2830 SM00869 Autotransporter beta-domain BB2835 SM00155 Phospholipase D. Active site motifs. BB2844 SM00559 Ku70 and Ku80 are 70kDa and 80kDa subunits of the Lupus Ku autoantigen BB2857 SM00382 ATPases associated with a variety of cellular activities BB2857 SM00448 cheY-homologous receiver domain BB2858 SM00382 ATPases associated with a variety of cellular activities BB2862 SM00642 Alpha-amylase domain BB2863 SM00642 Alpha-amylase domain BB2864 SM00642 Alpha-amylase domain BB2865 SM00642 Alpha-amylase domain BB2866 SM00642 Alpha-amylase domain BB2868 SM00642 Alpha-amylase domain BB2869 SM00065 Domain present in phytochromes and cGMP-specific phosphodiesterases. BB2869 SM00091 PAS domain BB2869 SM00387 Histidine kinase-like ATPases BB2869 SM00388 His Kinase A (phosphoacceptor) domain BB2869 SM00448 cheY-homologous receiver domain BB2872 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB2897 SM00953 BB2897 BB2905 SM00382 ATPases associated with a variety of cellular activities BB2906 SM00382 ATPases associated with a variety of cellular activities BB2915 SM00382 ATPases associated with a variety of cellular activities BB2918 SM00822 BB2918 BB2918 SM00823 Phosphopantetheine attachment site BB2918 SM00825 Beta-ketoacyl synthase BB2918 SM00826 BB2918 BB2918 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BB2918 SM00829 Enoylreductase BB2918 SM01294 BB2918 BB2925 SM00984 UDP binding domain BB2930 SM00382 ATPases associated with a variety of cellular activities BB2939 SM00487 DEAD-like helicases superfamily BB2939 SM00490 helicase superfamily c-terminal domain BB2941 SM00869 Autotransporter beta-domain BB2948 SM00382 ATPases associated with a variety of cellular activities BB2952 SM00382 ATPases associated with a variety of cellular activities BB2952 SM00448 cheY-homologous receiver domain BB2953 SM00091 PAS domain BB2953 SM00387 Histidine kinase-like ATPases BB2953 SM00388 His Kinase A (phosphoacceptor) domain BB2954 SM01230 BB2954 BB2955 SM00729 Elongator protein 3, MiaB family, Radical SAM BB2957 SM00052 Putative diguanylate phosphodiesterase BB2957 SM00267 diguanylate cyclase BB2958 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BB2958 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BB2965 SM00530 Helix-turn-helix XRE-family like proteins BB2968 SM00822 BB2968 BB2971 SM00072 Guanylate kinase homologues. BB2972 SM01409 BB2972 BB2973 SM00471 Metal dependent phosphohydrolases with conserved 'HD' motif. BB2973 SM00954 Region found in RelA / SpoT proteins BB2974 SM00382 ATPases associated with a variety of cellular activities BB2976 SM00062 Bacterial periplasmic substrate-binding proteins BB2976 SM00079 Eukaryotic homologues of bacterial periplasmic substrate binding proteins. BB2993 SM00912 haemagglutination activity domain BB2994 SM00421 helix_turn_helix, Lux Regulon BB2994 SM00448 cheY-homologous receiver domain BB2995 SM00062 Bacterial periplasmic substrate-binding proteins BB2995 SM00073 Histidine Phosphotransfer domain BB2995 SM00091 PAS domain BB2995 SM00387 Histidine kinase-like ATPases BB2995 SM00388 His Kinase A (phosphoacceptor) domain BB2995 SM00448 cheY-homologous receiver domain BB2996 SM00052 Putative diguanylate phosphodiesterase BB3005 SM00382 ATPases associated with a variety of cellular activities BB3013 SM00422 helix_turn_helix, mercury resistance BB3018 SM00257 Lysin motif BB3021 SM01207 BB3021 BB3027 SM00062 Bacterial periplasmic substrate-binding proteins BB3030 SM00382 ATPases associated with a variety of cellular activities BB3031 SM00382 ATPases associated with a variety of cellular activities BB3050 SM00344 helix_turn_helix ASNC type BB3057 SM00382 ATPases associated with a variety of cellular activities BB3058 SM00382 ATPases associated with a variety of cellular activities BB3059 SM00420 helix_turn_helix, Deoxyribose operon repressor BB3059 SM01134 BB3059 BB3061 SM00346 helix_turn_helix isocitrate lyase regulation BB3070 SM01130 BB3070 BB3078 SM01007 Class II Aldolase and Adducin N-terminal domain BB3079 SM00530 Helix-turn-helix XRE-family like proteins BB3080 SM00347 helix_turn_helix multiple antibiotic resistance protein BB3088 SM00481 DNA polymerase alpha chain like domain BB3103 SM00382 ATPases associated with a variety of cellular activities BB3110 SM00869 Autotransporter beta-domain BB3111 SM00869 Autotransporter beta-domain BB3114 SM00091 PAS domain BB3114 SM00267 diguanylate cyclase BB3115 SM00091 PAS domain BB3115 SM00283 Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). BB3116 SM00052 Putative diguanylate phosphodiesterase BB3126 SM00091 PAS domain BB3126 SM00382 ATPases associated with a variety of cellular activities BB3128 SM00052 Putative diguanylate phosphodiesterase BB3152 SM00382 ATPases associated with a variety of cellular activities BB3153 SM00382 ATPases associated with a variety of cellular activities BB3162 SM00400 zinc finger BB3162 SM00493 BB3162 BB3162 SM00766 DNA primase DnaG DnaB-binding BB3165 SM00788 Adenylosuccinate synthetase BB3167 SM00244 prohibitin homologues BB3168 SM00244 prohibitin homologues BB3172 SM00382 ATPases associated with a variety of cellular activities BB3173 SM00564 beta-propeller repeat BB3179 SM00562 BB3179 BB3182 SM00448 cheY-homologous receiver domain BB3182 SM00862 Transcriptional regulatory protein, C terminal BB3183 SM00387 Histidine kinase-like ATPases BB3183 SM00388 His Kinase A (phosphoacceptor) domain BB3191 SM00863 Threonyl and Alanyl tRNA synthetase second additional domain BB3201 SM00382 ATPases associated with a variety of cellular activities BB3213 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB3213 SM00866 BB3213 BB3221 SM00347 helix_turn_helix multiple antibiotic resistance protein BB3227 SM00434 DNA Topoisomerase IV BB3229 SM00387 Histidine kinase-like ATPases BB3229 SM00433 TopoisomeraseII BB3231 SM00357 Cold shock protein domain BB3231 SM00382 ATPases associated with a variety of cellular activities BB3231 SM00959 Rho termination factor, N-terminal domain BB3239 SM00279 Helix-hairpin-helix class 2 (Pol1 family) motifs BB3239 SM00474 3'-5' exonuclease BB3239 SM00475 5'-3' exonuclease BB3239 SM00482 DNA polymerase A domain BB3247 SM00316 Ribosomal protein S1-like RNA-binding domain BB3249 SM00363 S4 RNA-binding domain BB3253 SM00833 Cobalamin synthesis protein cobW C-terminal domain BB3266 SM00382 ATPases associated with a variety of cellular activities BB3267 SM00327 von Willebrand factor (vWF) type A domain BB3271 SM01005 Alanine racemase, C-terminal domain BB3278 SM00382 ATPases associated with a variety of cellular activities BB3292 SM00869 Autotransporter beta-domain BB3293 SM00382 ATPases associated with a variety of cellular activities BB3293 SM01086 C-terminal, D2-small domain, of ClpB protein BB3294 SM00100 Cyclic nucleotide-monophosphate binding domain BB3294 SM00419 helix_turn_helix, cAMP Regulatory protein BB3307 SM00062 Bacterial periplasmic substrate-binding proteins BB3310 SM00382 ATPases associated with a variety of cellular activities BB3317 SM00052 Putative diguanylate phosphodiesterase BB3317 SM00267 diguanylate cyclase BB3320 SM00382 ATPases associated with a variety of cellular activities BB3343 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BB3343 SM00465 GIY-YIG type nucleases (URI domain) BB3350 SM00862 Transcriptional regulatory protein, C terminal BB3354 SM00382 ATPases associated with a variety of cellular activities BB3362 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB3362 SM00895 BB3362 BB3366 SM00382 ATPases associated with a variety of cellular activities BB3374 SM00411 bacterial (prokaryotic) histone like domain BB3375 SM00347 helix_turn_helix multiple antibiotic resistance protein BB3386 SM00316 Ribosomal protein S1-like RNA-binding domain BB3390 SM00382 ATPases associated with a variety of cellular activities BB3401 SM00481 DNA polymerase alpha chain like domain BB3403 SM00382 ATPases associated with a variety of cellular activities BB3403 SM00487 DEAD-like helicases superfamily BB3403 SM00490 helicase superfamily c-terminal domain BB3403 SM00847 Helicase associated domain (HA2) Add an annotation BB3416 SM00382 ATPases associated with a variety of cellular activities BB3438 SM00479 BB3438 BB3446 SM00729 Elongator protein 3, MiaB family, Radical SAM BB3450 SM00382 ATPases associated with a variety of cellular activities BB3456 SM00893 Electron transfer flavoprotein domain BB3457 SM00893 Electron transfer flavoprotein domain BB3466 SM00411 bacterial (prokaryotic) histone like domain BB3467 SM00316 Ribosomal protein S1-like RNA-binding domain BB3471 SM00830 Chorismate mutase type II BB3473 SM00434 DNA Topoisomerase IV BB3522 SM00530 Helix-turn-helix XRE-family like proteins BB3563 SM00382 ATPases associated with a variety of cellular activities BB3566 SM00062 Bacterial periplasmic substrate-binding proteins BB3576 SM00267 diguanylate cyclase BB3583 SM00382 ATPases associated with a variety of cellular activities BB3585 SM01209 BB3585 BB3588 SM00749 bacterial OsmY and nodulation domain BB3595 SM00822 BB3595 BB3598 SM00363 S4 RNA-binding domain BB3600 SM00491 BB3600 BB3601 SM00316 Ribosomal protein S1-like RNA-binding domain BB3601 SM00732 Likely ribonuclease with RNase H fold. BB3648 SM00382 ATPases associated with a variety of cellular activities BB3653 SM00411 bacterial (prokaryotic) histone like domain BB3658 SM00965 Secretin and TonB N terminus short domain BB3669 SM00861 Transketolase, pyrimidine binding domain BB3671 SM00344 helix_turn_helix ASNC type BB3673 SM00919 Malic enzyme, NAD binding domain BB3673 SM01274 BB3673 BB3683 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB3683 SM00866 BB3683 BB3691 SM00981 BB3691 BB3701 SM00028 Tetratricopeptide repeats BB3701 SM00862 Transcriptional regulatory protein, C terminal BB3703 SM01192 BB3703 BB3703 SM01193 BB3703 BB3713 SM00382 ATPases associated with a variety of cellular activities BB3716 SM00882 Coenzyme A transferase BB3717 SM00882 Coenzyme A transferase BB3746 SM00358 Double-stranded RNA binding motif BB3746 SM00535 Ribonuclease III family BB3748 SM00838 Elongation factor G C-terminus BB3749 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BB3754 SM00825 Beta-ketoacyl synthase BB3756 SM00822 BB3756 BB3757 SM00827 Acyl transferase domain in polyketide synthase (PKS) enzymes. BB3764 SM00644 BB3764 BB3768 SM00363 S4 RNA-binding domain BB3769 SM00316 Ribosomal protein S1-like RNA-binding domain BB3776 SM00954 Region found in RelA / SpoT proteins BB3785 SM00478 endonuclease III BB3785 SM00525 BB3785 BB3786 SM00382 ATPases associated with a variety of cellular activities BB3787 SM00382 ATPases associated with a variety of cellular activities BB3793 SM00382 ATPases associated with a variety of cellular activities BB3794 SM00382 ATPases associated with a variety of cellular activities BB3799 SM00382 ATPases associated with a variety of cellular activities BB3804 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BB3804 SM00292 breast cancer carboxy-terminal domain BB3804 SM00532 Ligase N family BB3805 SM00771 ZipA, C-terminal domain (FtsZ-binding) BB3806 SM00968 SMC proteins Flexible Hinge Domain BB3808 SM00986 Uracil DNA glycosylase superfamily BB3808 SM00987 UreE urease accessory protein, C-terminal domain BB3810 SM00448 cheY-homologous receiver domain BB3810 SM00862 Transcriptional regulatory protein, C terminal BB3811 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BB3811 SM00387 Histidine kinase-like ATPases BB3811 SM00388 His Kinase A (phosphoacceptor) domain BB3814 SM00342 helix_turn_helix, arabinose operon control protein BB3818 SM00487 DEAD-like helicases superfamily BB3818 SM00490 helicase superfamily c-terminal domain BB3818 SM00982 BB3818 BB3818 SM01058 CarD-like/TRCF domain BB3835 SM00929 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region BB3836 SM00928 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region BB3846 SM00014 Acid phosphatase homologues BB3857 SM00346 helix_turn_helix isocitrate lyase regulation BB3862 SM00450 Rhodanese Homology Domain BB3873 SM00346 helix_turn_helix isocitrate lyase regulation BB3877 SM00829 Enoylreductase BB3881 SM00316 Ribosomal protein S1-like RNA-binding domain BB3881 SM00322 K homology RNA-binding domain BB3882 SM01387 BB3882 BB3894 SM01006 Siderophore biosynthesis protein domain BB3898 SM00342 helix_turn_helix, arabinose operon control protein BB3903 SM00267 diguanylate cyclase BB3909 SM00382 ATPases associated with a variety of cellular activities BB3911 SM00843 BB3911 BB3913 SM00463 Small MutS-related domain BB3920 SM00387 Histidine kinase-like ATPases BB3920 SM00388 His Kinase A (phosphoacceptor) domain BB3921 SM00448 cheY-homologous receiver domain BB3921 SM00862 Transcriptional regulatory protein, C terminal BB3924 SM01329 BB3924 BB3928 SM00382 ATPases associated with a variety of cellular activities BB3933 SM00271 DnaJ molecular chaperone homology domain BB3957 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB3957 SM00895 BB3957 BB3961 SM00422 helix_turn_helix, mercury resistance BB3961 SM00530 Helix-turn-helix XRE-family like proteins BB3979 SM00346 helix_turn_helix isocitrate lyase regulation BB3980 SM00852 Probable molybdopterin binding domain BB3983 SM00487 DEAD-like helicases superfamily BB3983 SM00490 helicase superfamily c-terminal domain BB3996 SM01011 Aminopeptidase P, N-terminal domain BB4001 SM00798 AICARFT/IMPCHase bienzyme BB4001 SM00851 MGS-like domain BB4003 SM00278 Helix-hairpin-helix DNA-binding motif class 1 BB4006 SM00382 ATPases associated with a variety of cellular activities BB4007 SM00341 Helicase and RNase D C-terminal BB4007 SM00487 DEAD-like helicases superfamily BB4007 SM00490 helicase superfamily c-terminal domain BB4007 SM00956 BB4007 BB4009 SM00448 cheY-homologous receiver domain BB4009 SM00862 Transcriptional regulatory protein, C terminal BB4010 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BB4010 SM00387 Histidine kinase-like ATPases BB4019 SM00382 ATPases associated with a variety of cellular activities BB4024 SM00382 ATPases associated with a variety of cellular activities BB4025 SM00382 ATPases associated with a variety of cellular activities BB4032 SM00382 ATPases associated with a variety of cellular activities BB4038 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB4038 SM00866 BB4038 BB4043 SM00903 Flavin reductase like domain BB4056 SM00646 BB4056 BB4058 SM00853 MutL C terminal dimerisation domain BB4058 SM01340 BB4058 BB4061 SM00382 ATPases associated with a variety of cellular activities BB4069 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB4069 SM00895 BB4069 BB4072 SM00849 Metallo-beta-lactamase superfamily BB4075 SM00822 BB4075 BB4084 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB4084 SM00866 BB4084 BB4092 SM00563 Phosphate acyltransferases BB4100 SM00650 Ribosomal RNA adenine dimethylases BB4112 SM00382 ATPases associated with a variety of cellular activities BB4116 SM00346 helix_turn_helix isocitrate lyase regulation BB4122 SM00965 Secretin and TonB N terminus short domain BB4123 SM00867 YceI-like domain BB4150 SM00822 BB4150 BB4154 SM00422 helix_turn_helix, mercury resistance BB4158 SM00382 ATPases associated with a variety of cellular activities BB4164 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB4164 SM00895 BB4164 BB4171 SM00382 ATPases associated with a variety of cellular activities BB4171 SM00930 BB4171 BB4180 SM00116 Domain in cystathionine beta-synthase and other proteins. BB4180 SM00924 MgtE intracellular N domain BB4183 SM00344 helix_turn_helix ASNC type BB4189 SM00957 SecA DEAD-like domain BB4189 SM00958 SecA preprotein cross-linking domain BB4193 SM00864 Tubulin/FtsZ family, GTPase domain BB4193 SM00865 Tubulin/FtsZ family, C-terminal domain BB4194 SM00842 Cell division protein FtsA BB4207 SM00382 ATPases associated with a variety of cellular activities BB4210 SM00151 SWI complex, BAF60b domains BB4212 SM00344 helix_turn_helix ASNC type BB4229 SM00387 Histidine kinase-like ATPases BB4229 SM00388 His Kinase A (phosphoacceptor) domain BB4230 SM00448 cheY-homologous receiver domain BB4230 SM00862 Transcriptional regulatory protein, C terminal BB4241 SM00382 ATPases associated with a variety of cellular activities BB4244 SM00347 helix_turn_helix multiple antibiotic resistance protein BB4259 SM00838 Elongation factor G C-terminus BB4259 SM00889 Elongation factor G, domain IV BB4262 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB4275 SM00479 BB4275 BB4280 SM00849 Metallo-beta-lactamase superfamily BB4281 SM00257 Lysin motif BB4294 SM00382 ATPases associated with a variety of cellular activities BB4304 SM00829 Enoylreductase BB4307 SM00382 ATPases associated with a variety of cellular activities BB4310 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB4313 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB4322 SM00988 UreE urease accessory protein, N-terminal domain BB4336 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB4336 SM00866 BB4336 BB4343 SM00763 PrkA AAA domain BB4346 SM00342 helix_turn_helix, arabinose operon control protein BB4350 SM00363 S4 RNA-binding domain BB4355 SM00859 Semialdehyde dehydrogenase, NAD binding domain BB4363 SM00382 ATPases associated with a variety of cellular activities BB4367 SM00487 DEAD-like helicases superfamily BB4367 SM00490 helicase superfamily c-terminal domain BB4369 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB4369 SM00895 BB4369 BB4374 SM00344 helix_turn_helix ASNC type BB4389 SM00878 Biotin carboxylase C-terminal domain BB4395 SM00955 BB4395 BB4401 SM00563 Phosphate acyltransferases BB4404 SM00732 Likely ribonuclease with RNase H fold. BB4416 SM00822 BB4416 BB4419 SM00382 ATPases associated with a variety of cellular activities BB4424 SM00347 helix_turn_helix multiple antibiotic resistance protein BB4437 SM00421 helix_turn_helix, Lux Regulon BB4445 SM00382 ATPases associated with a variety of cellular activities BB4448 SM00062 Bacterial periplasmic substrate-binding proteins BB4449 SM00382 ATPases associated with a variety of cellular activities BB4453 SM00478 endonuclease III BB4454 SM00530 Helix-turn-helix XRE-family like proteins BB4456 SM01018 B12 binding domain BB4467 SM00978 BB4467 BB4469 SM00448 cheY-homologous receiver domain BB4469 SM00862 Transcriptional regulatory protein, C terminal BB4470 SM00091 PAS domain BB4470 SM00387 Histidine kinase-like ATPases BB4470 SM00388 His Kinase A (phosphoacceptor) domain BB4471 SM00448 cheY-homologous receiver domain BB4471 SM00862 Transcriptional regulatory protein, C terminal BB4472 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BB4472 SM00387 Histidine kinase-like ATPases BB4472 SM00388 His Kinase A (phosphoacceptor) domain BB4477 SM00796 Allophanate hydrolase subunit 1 BB4478 SM00797 Allophanate hydrolase subunit 2 BB4480 SM00346 helix_turn_helix isocitrate lyase regulation BB4486 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB4486 SM00895 BB4486 BB4494 SM00382 ATPases associated with a variety of cellular activities BB4495 SM00382 ATPases associated with a variety of cellular activities BB4501 SM00116 Domain in cystathionine beta-synthase and other proteins. BB4505 SM00382 ATPases associated with a variety of cellular activities BB4517 SM00749 bacterial OsmY and nodulation domain BB4532 SM00845 GatB domain BB4535 SM00839 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase BB4539 SM01329 BB4539 BB4542 SM00448 cheY-homologous receiver domain BB4542 SM00862 Transcriptional regulatory protein, C terminal BB4543 SM00304 HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain BB4543 SM00387 Histidine kinase-like ATPases BB4543 SM00388 His Kinase A (phosphoacceptor) domain BB4546 SM00062 Bacterial periplasmic substrate-binding proteins BB4549 SM00382 ATPases associated with a variety of cellular activities BB4557 SM00421 helix_turn_helix, Lux Regulon BB4567 SM00354 helix_turn _helix lactose operon repressor BB4570 SM00382 ATPases associated with a variety of cellular activities BB4571 SM00382 ATPases associated with a variety of cellular activities BB4576 SM00346 helix_turn_helix isocitrate lyase regulation BB4596 SM00382 ATPases associated with a variety of cellular activities BB4597 SM00382 ATPases associated with a variety of cellular activities BB4601 SM00487 DEAD-like helicases superfamily BB4601 SM00490 helicase superfamily c-terminal domain BB4605 SM00382 ATPases associated with a variety of cellular activities BB4615 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BB4617 SM00905 Dihydroneopterin aldolase BB4622 SM00925 MltA specific insert domain BB4630 SM00822 BB4630 BB4634 SM00849 Metallo-beta-lactamase superfamily BB4640 SM00062 Bacterial periplasmic substrate-binding proteins BB4644 SM01236 BB4644 BB4647 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB4647 SM00895 BB4647 BB4655 SM00965 Secretin and TonB N terminus short domain BB4659 SM00382 ATPases associated with a variety of cellular activities BB4664 SM00267 diguanylate cyclase BB4669 SM00849 Metallo-beta-lactamase superfamily BB4672 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB4672 SM00895 BB4672 BB4685 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB4685 SM00895 BB4685 BB4687 SM00922 Mandelate racemase / muconate lactonizing enzyme, C-terminal domain BB4690 SM00346 helix_turn_helix isocitrate lyase regulation BB4696 SM00382 ATPases associated with a variety of cellular activities BB4697 SM00382 ATPases associated with a variety of cellular activities BB4704A SM00861 Transketolase, pyrimidine binding domain BB4706 SM00346 helix_turn_helix isocitrate lyase regulation BB4708 SM00881 CoA binding domain BB4720 SM01130 BB4720 BB4721 SM00345 helix_turn_helix gluconate operon transcriptional repressor BB4721 SM00895 BB4721 BB4723 SM00796 Allophanate hydrolase subunit 1 BB4724 SM00797 Allophanate hydrolase subunit 2 BB4729 SM00382 ATPases associated with a variety of cellular activities BB4735 SM00878 Biotin carboxylase C-terminal domain BB4739 SM00450 Rhodanese Homology Domain BB4744 SM00965 Secretin and TonB N terminus short domain BB4747 SM00346 helix_turn_helix isocitrate lyase regulation BB4748 SM00829 Enoylreductase BB4750 SM00822 BB4750 BB4758 SM00347 helix_turn_helix multiple antibiotic resistance protein BB4759 SM00893 Electron transfer flavoprotein domain BB4760 SM00893 Electron transfer flavoprotein domain BB4764 SM00822 BB4764 BB4769 SM00346 helix_turn_helix isocitrate lyase regulation BB4776 SM00382 ATPases associated with a variety of cellular activities BB4795 SM00829 Enoylreductase BB4797 SM00881 CoA binding domain BB4803 SM00344 helix_turn_helix ASNC type BB4808 SM00881 CoA binding domain BB4810 SM00346 helix_turn_helix isocitrate lyase regulation BB4813 SM00342 helix_turn_helix, arabinose operon control protein BB4815 SM00984 UDP binding domain BB4833 SM00100 Cyclic nucleotide-monophosphate binding domain BB4838 SM00829 Enoylreductase BB4844 SM00382 ATPases associated with a variety of cellular activities BB4849 SM00382 ATPases associated with a variety of cellular activities BB4866 SM00530 Helix-turn-helix XRE-family like proteins BB4867 SM00228 Domain present in PSD-95, Dlg, and ZO-1/2. BB4881 SM00346 helix_turn_helix isocitrate lyase regulation BB4882 SM00450 Rhodanese Homology Domain BB4904 SM00342 helix_turn_helix, arabinose operon control protein BB4911 SM00382 ATPases associated with a variety of cellular activities BB4914 SM00487 DEAD-like helicases superfamily BB4914 SM00490 helicase superfamily c-terminal domain BB4924 SM00917 LeuA allosteric (dimerisation) domain BB4926 SM00354 helix_turn _helix lactose operon repressor BB4930 SM00382 ATPases associated with a variety of cellular activities BB4932 SM00382 ATPases associated with a variety of cellular activities BB4938 SM00836 DALR anticodon binding domain BB4938 SM01016 Arginyl tRNA synthetase N terminal dom BB4943 SM00849 Metallo-beta-lactamase superfamily BB4944 SM00422 helix_turn_helix, mercury resistance BB4949 SM00878 Biotin carboxylase C-terminal domain BB4949 SM01209 BB4949 BB4953 SM01119 BB4953 BB4960 SM00436 Bacterial DNA topoisomeraes I ATP-binding domain BB4960 SM00437 Bacterial DNA topoisomerase I DNA-binding domain BB4960 SM00493 BB4960 BB4962 SM00382 ATPases associated with a variety of cellular activities BB4964 SM00822 BB4964 BB4968 SM00344 helix_turn_helix ASNC type BB4970 SM00317 SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain BB4976 SM00450 Rhodanese Homology Domain BB4979 SM00342 helix_turn_helix, arabinose operon control protein BB4979 SM00871 Bacterial transcription activator, effector binding domain BB4984 SM00346 helix_turn_helix isocitrate lyase regulation BB4985 SM00320 WD40 repeats BB4987 SM00387 Histidine kinase-like ATPases BB4987 SM00433 TopoisomeraseII BB4988 SM00480 DNA polymerase III beta subunit BB4989 SM00382 ATPases associated with a variety of cellular activities BB4989 SM00760 Bacterial dnaA protein helix-turn-helix domain BB4992 SM01234 BB4992 BB4994 SM01060 BB4994 BB4996 SM00382 ATPases associated with a variety of cellular activities BB5000 SM00382 ATPases associated with a variety of cellular activities BB5001 SM00382 ATPases associated with a variety of cellular activities BB5007 SM00448 cheY-homologous receiver domain BB5007 SM00862 Transcriptional regulatory protein, C terminal BB5008 SM00387 Histidine kinase-like ATPases BB5008 SM00388 His Kinase A (phosphoacceptor) domain BB5013 SM00357 Cold shock protein domain