locus-tag class description AL474_00015 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AL474_00040 PF00005 ABC transporter AL474_00045 PF00528 Binding-protein-dependent transport system inner membrane component AL474_00050 PF00528 Binding-protein-dependent transport system inner membrane component AL474_00055 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL474_00090 PF02627 Carboxymuconolactone decarboxylase family AL474_00095 PF12680 SnoaL-like domain AL474_00095 PF08281 Sigma-70, region 4 AL474_00095 PF04542 Sigma-70 region 2 AL474_00105 PF12843 Putative quorum-sensing-regulated virulence factor AL474_00110 PF00293 NUDIX domain AL474_00125 PF13545 Crp-like helix-turn-helix domain AL474_00125 PF00027 Cyclic nucleotide-binding domain AL474_00130 PF02861 Clp amino terminal domain, pathogenicity island component AL474_00130 PF17871 AAA lid domain AL474_00130 PF10431 C-terminal, D2-small domain, of ClpB protein AL474_00130 PF07724 AAA domain (Cdc48 subfamily) AL474_00130 PF00004 ATPase family associated with various cellular activities (AAA) AL474_00145 PF03212 Pertactin AL474_00145 PF03797 Autotransporter beta-domain AL474_00160 PF09370 Phosphoenolpyruvate hydrolase-like AL474_00170 PF03466 LysR substrate binding domain AL474_00170 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_00175 PF07969 Amidohydrolase family AL474_00185 PF00667 FAD binding domain AL474_00185 PF00175 Oxidoreductase NAD-binding domain AL474_00185 PF00258 Flavodoxin AL474_00190 PF02424 ApbE family AL474_00210 PF00005 ABC transporter AL474_00215 PF01061 ABC-2 type transporter AL474_00225 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AL474_00245 PF00842 Alanine racemase, C-terminal domain AL474_00245 PF01168 Alanine racemase, N-terminal domain AL474_00265 PF04542 Sigma-70 region 2 AL474_00265 PF04545 Sigma-70, region 4 AL474_00270 PF00092 von Willebrand factor type A domain AL474_00270 PF12450 von Willebrand factor AL474_00270 PF12034 Domain of unknown function (DUF3520) AL474_00275 PF18073 Rubredoxin metal binding domain AL474_00300 PF01197 Ribosomal protein L31 AL474_00305 PF03301 Tryptophan 2,3-dioxygenase AL474_00310 PF04199 Putative cyclase AL474_00315 PF04002 RadC-like JAB domain AL474_00320 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL474_00325 PF02401 LytB protein AL474_00330 PF02798 Glutathione S-transferase, N-terminal domain AL474_00330 PF14497 Glutathione S-transferase, C-terminal domain AL474_00350 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL474_00350 PF07683 Cobalamin synthesis protein cobW C-terminal domain AL474_00355 PF00881 Nitroreductase family AL474_00360 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_00360 PF03466 LysR substrate binding domain AL474_00370 PF04079 Segregation and condensation complex subunit ScpB AL474_00380 PF17384 RimP C-terminal SH3 domain AL474_00380 PF02576 RimP N-terminal domain AL474_00385 PF08529 NusA N-terminal domain AL474_00385 PF13184 NusA-like KH domain AL474_00390 PF11987 Translation-initiation factor 2 AL474_00390 PF00009 Elongation factor Tu GTP binding domain AL474_00390 PF08364 Bacterial translation initiation factor IF-2 associated region AL474_00390 PF04760 Translation initiation factor IF-2, N-terminal region AL474_00395 PF02033 Ribosome-binding factor A AL474_00400 PF16198 tRNA pseudouridylate synthase B C-terminal domain AL474_00400 PF01509 TruB family pseudouridylate synthase (N terminal domain) AL474_00420 PF03641 Possible lysine decarboxylase AL474_00425 PF02739 5'-3' exonuclease, N-terminal resolvase-like domain AL474_00425 PF01367 5'-3' exonuclease, C-terminal SAM fold AL474_00425 PF00476 DNA polymerase family A AL474_00425 PF01612 3'-5' exonuclease AL474_00435 PF01738 Dienelactone hydrolase family AL474_00440 PF02690 Na+/Pi-cotransporter AL474_00445 PF03315 Serine dehydratase beta chain AL474_00445 PF03313 Serine dehydratase alpha chain AL474_00450 PF02677 Epoxyqueuosine reductase QueH AL474_00455 PF03710 Glutamate-ammonia ligase adenylyltransferase AL474_00455 PF08335 GlnD PII-uridylyltransferase AL474_00465 PF07498 Rho termination factor, N-terminal domain AL474_00465 PF07497 Rho termination factor, RNA-binding domain AL474_00465 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL474_00470 PF00085 Thioredoxin AL474_00475 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL474_00475 PF01751 Toprim domain AL474_00475 PF00204 DNA gyrase B AL474_00475 PF00986 DNA gyrase B subunit, carboxyl terminus AL474_00485 PF00521 DNA gyrase/topoisomerase IV, subunit A AL474_00515 PF01177 Asp/Glu/Hydantoin racemase AL474_00520 PF00005 ABC transporter AL474_00525 PF00005 ABC transporter AL474_00525 PF12399 Branched-chain amino acid ATP-binding cassette transporter AL474_00530 PF11862 Domain of unknown function (DUF3382) AL474_00530 PF02653 Branched-chain amino acid transport system / permease component AL474_00535 PF02653 Branched-chain amino acid transport system / permease component AL474_00540 PF13458 Periplasmic binding protein AL474_00550 PF02592 Putative vitamin uptake transporter AL474_00555 PF03807 NADP oxidoreductase coenzyme F420-dependent AL474_00555 PF14748 Pyrroline-5-carboxylate reductase dimerisation AL474_00560 PF13416 Bacterial extracellular solute-binding protein AL474_00565 PF00528 Binding-protein-dependent transport system inner membrane component AL474_00570 PF00528 Binding-protein-dependent transport system inner membrane component AL474_00575 PF00005 ABC transporter AL474_00575 PF17912 MalK OB fold domain AL474_00580 PF13458 Periplasmic binding protein AL474_00600 PF04241 Protein of unknown function (DUF423) AL474_00615 PF03180 NLPA lipoprotein AL474_00620 PF01070 FMN-dependent dehydrogenase AL474_00625 PF02666 Phosphatidylserine decarboxylase AL474_00640 PF03099 Biotin/lipoate A/B protein ligase family AL474_00640 PF10437 Bacterial lipoate protein ligase C-terminus AL474_00655 PF02798 Glutathione S-transferase, N-terminal domain AL474_00655 PF00043 Glutathione S-transferase, C-terminal domain AL474_00660 PF00255 Glutathione peroxidase AL474_00680 PF02515 CoA-transferase family III AL474_00685 PF03960 ArsC family AL474_00690 PF00578 AhpC/TSA family AL474_00710 PF07681 DoxX AL474_00730 PF00582 Universal stress protein family AL474_00745 PF00155 Aminotransferase class I and II AL474_00745 PF00392 Bacterial regulatory proteins, gntR family AL474_00750 PF01168 Alanine racemase, N-terminal domain AL474_00755 PF08543 Phosphomethylpyrimidine kinase AL474_00785 PF00128 Alpha amylase, catalytic domain AL474_00785 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL474_00790 PF00128 Alpha amylase, catalytic domain AL474_00790 PF02806 Alpha amylase, C-terminal all-beta domain AL474_00790 PF02922 Carbohydrate-binding module 48 (Isoamylase N-terminal domain) AL474_00795 PF16657 Maltogenic Amylase, C-terminal domain AL474_00795 PF00128 Alpha amylase, catalytic domain AL474_00845 PF13091 PLD-like domain AL474_00850 PF03372 Endonuclease/Exonuclease/phosphatase family AL474_00855 PF03551 Transcriptional regulator PadR-like family AL474_00865 PF12951 Passenger-associated-transport-repeat AL474_00875 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_00875 PF03466 LysR substrate binding domain AL474_00885 PF03328 HpcH/HpaI aldolase/citrate lyase family AL474_00890 PF07729 FCD domain AL474_00890 PF00392 Bacterial regulatory proteins, gntR family AL474_00900 PF03401 Tripartite tricarboxylate transporter family receptor AL474_00910 PF02515 CoA-transferase family III AL474_00915 PF03401 Tripartite tricarboxylate transporter family receptor AL474_00920 PF00356 Bacterial regulatory proteins, lacI family AL474_00925 PF00694 Aconitase C-terminal domain AL474_00935 PF03401 Tripartite tricarboxylate transporter family receptor AL474_00940 PF13378 Enolase C-terminal domain-like AL474_00945 PF08546 Ketopantoate reductase PanE/ApbA C terminal AL474_00945 PF02558 Ketopantoate reductase PanE/ApbA AL474_00955 PF00005 ABC transporter AL474_00965 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL474_00975 PF01312 FlhB HrpN YscU SpaS Family AL474_00995 PF04316 Anti-sigma-28 factor, FlgM AL474_01005 PF00460 Flagella basal body rod protein AL474_01010 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL474_01010 PF00460 Flagella basal body rod protein AL474_01015 PF13860 FlgD Ig-like domain AL474_01015 PF13861 FlgD Tudor-like domain AL474_01015 PF03963 Flagellar hook capping protein - N-terminal region AL474_01020 PF00460 Flagella basal body rod protein AL474_01020 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL474_01020 PF07559 Flagellar basal body protein FlaE AL474_01025 PF00460 Flagella basal body rod protein AL474_01025 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL474_01030 PF00460 Flagella basal body rod protein AL474_01030 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL474_01035 PF02107 Flagellar L-ring protein AL474_01040 PF02119 Flagellar P-ring protein AL474_01045 PF10135 Rod binding protein AL474_01045 PF01832 Mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase AL474_01050 PF00460 Flagella basal body rod protein AL474_01050 PF06429 Flagellar basal body rod FlgEFG protein C-terminal AL474_01055 PF00669 Bacterial flagellin N-terminal helical region AL474_01060 PF00672 HAMP domain AL474_01060 PF02203 Tar ligand binding domain homologue AL474_01060 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL474_01065 PF00672 HAMP domain AL474_01065 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL474_01065 PF02203 Tar ligand binding domain homologue AL474_01070 PF08447 PAS fold AL474_01070 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL474_01080 PF01311 Bacterial export proteins, family 1 AL474_01085 PF01313 Bacterial export proteins, family 3 AL474_01090 PF00813 FliP family AL474_01095 PF04347 Flagellar biosynthesis protein, FliO AL474_01100 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL474_01100 PF16973 Flagellar motor switch protein FliN N-terminal AL474_01105 PF02154 Flagellar motor switch protein FliM AL474_01105 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL474_01110 PF03748 Flagellar basal body-associated protein FliL AL474_01135 PF18269 T3SS EscN ATPase C-terminal domain AL474_01135 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL474_01145 PF14842 FliG N-terminal domain AL474_01145 PF14841 FliG middle domain AL474_01145 PF01706 FliG C-terminal domain AL474_01150 PF08345 Flagellar M-ring protein C-terminal AL474_01150 PF01514 Secretory protein of YscJ/FliF family AL474_01155 PF02049 Flagellar hook-basal body complex protein FliE AL474_01165 PF01312 FlhB HrpN YscU SpaS Family AL474_01190 PF02561 Flagellar protein FliS AL474_01195 PF07196 Flagellin hook IN motif AL474_01195 PF07195 Flagellar hook-associated protein 2 C-terminus AL474_01195 PF02465 Flagellar hook-associated protein 2 N-terminus AL474_01205 PF08245 Mur ligase middle domain AL474_01205 PF02875 Mur ligase family, glutamate ligase domain AL474_01220 PF00156 Phosphoribosyl transferase domain AL474_01235 PF01966 HD domain AL474_01235 PF01909 Nucleotidyltransferase domain AL474_01235 PF08335 GlnD PII-uridylyltransferase AL474_01240 PF00557 Metallopeptidase family M24 AL474_01245 PF00318 Ribosomal protein S2 AL474_01250 PF00889 Elongation factor TS AL474_01255 PF00696 Amino acid kinase family AL474_01260 PF01765 Ribosome recycling factor AL474_01265 PF01255 Putative undecaprenyl diphosphate synthase AL474_01275 PF08436 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal domain AL474_01275 PF13288 DXP reductoisomerase C-terminal domain AL474_01275 PF02670 1-deoxy-D-xylulose 5-phosphate reductoisomerase AL474_01280 PF17820 PDZ domain AL474_01280 PF02163 Peptidase family M50 AL474_01285 PF01103 Surface antigen AL474_01285 PF07244 Surface antigen variable number repeat AL474_01290 PF03938 Outer membrane protein (OmpH-like) AL474_01295 PF00132 Bacterial transferase hexapeptide (six repeats) AL474_01295 PF04613 UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase, LpxD AL474_01300 PF07977 FabA-like domain AL474_01305 PF13720 Udp N-acetylglucosamine O-acyltransferase; Domain 2 AL474_01305 PF00132 Bacterial transferase hexapeptide (six repeats) AL474_01310 PF02684 Lipid-A-disaccharide synthetase AL474_01315 PF01351 Ribonuclease HII AL474_01320 PF00588 SpoU rRNA Methylase family AL474_01320 PF08032 RNA 2'-O ribose methyltransferase substrate binding AL474_01325 PF03618 Kinase/pyrophosphorylase AL474_01330 PF01326 Pyruvate phosphate dikinase, PEP/pyruvate binding domain AL474_01330 PF00391 PEP-utilising enzyme, mobile domain AL474_01330 PF02896 PEP-utilising enzyme, TIM barrel domain AL474_01335 PF00958 GMP synthase C terminal domain AL474_01335 PF00117 Glutamine amidotransferase class-I AL474_01350 PF01145 SPFH domain / Band 7 family AL474_01350 PF16200 C-terminal region of band_7 AL474_01355 PF08448 PAS fold AL474_01355 PF00990 Diguanylate cyclase, GGDEF domain AL474_01360 PF01668 SmpB protein AL474_01370 PF03364 Polyketide cyclase / dehydrase and lipid transport AL474_01375 PF03658 RnfH family Ubiquitin AL474_01380 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL474_01380 PF02770 Acyl-CoA dehydrogenase, middle domain AL474_01380 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL474_01385 PF00378 Enoyl-CoA hydratase/isomerase AL474_01390 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL474_01390 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL474_01415 PF00923 Transaldolase/Fructose-6-phosphate aldolase AL474_01420 PF00117 Glutamine amidotransferase class-I AL474_01420 PF00988 Carbamoyl-phosphate synthase small chain, CPSase domain AL474_01425 PF02142 MGS-like domain AL474_01425 PF02787 Carbamoyl-phosphate synthetase large chain, oligomerisation domain AL474_01425 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL474_01435 PF00300 Histidine phosphatase superfamily (branch 1) AL474_01445 PF08402 TOBE domain AL474_01445 PF00005 ABC transporter AL474_01450 PF00528 Binding-protein-dependent transport system inner membrane component AL474_01465 PF08448 PAS fold AL474_01465 PF00990 Diguanylate cyclase, GGDEF domain AL474_01465 PF08447 PAS fold AL474_01465 PF00563 EAL domain AL474_01470 PF01264 Chorismate synthase AL474_01475 PF01435 Peptidase family M48 AL474_01480 PF03205 Molybdopterin guanine dinucleotide synthesis protein B AL474_01485 PF03454 MoeA C-terminal region (domain IV) AL474_01485 PF03453 MoeA N-terminal region (domain I and II) AL474_01485 PF00994 Probable molybdopterin binding domain AL474_01490 PF12804 MobA-like NTP transferase domain AL474_01495 PF10609 NUBPL iron-transfer P-loop NTPase AL474_01525 PF00384 Molybdopterin oxidoreductase AL474_01525 PF04879 Molybdopterin oxidoreductase Fe4S4 domain AL474_01525 PF01568 Molydopterin dinucleotide binding domain AL474_01560 PF00005 ABC transporter AL474_01565 PF12849 PBP superfamily domain AL474_01570 PF00330 Aconitase family (aconitate hydratase) AL474_01575 PF00694 Aconitase C-terminal domain AL474_01580 PF00180 Isocitrate/isopropylmalate dehydrogenase AL474_01585 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL474_01585 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL474_01595 PF01416 tRNA pseudouridine synthase AL474_01600 PF03480 Bacterial extracellular solute-binding protein, family 7 AL474_01615 PF00697 N-(5'phosphoribosyl)anthranilate (PRA) isomerase AL474_01630 PF03883 Peroxide stress protein YaaA AL474_01645 PF01510 N-acetylmuramoyl-L-alanine amidase AL474_01655 PF02545 Maf-like protein AL474_01660 PF02620 Large ribosomal RNA subunit accumulation protein YceD AL474_01665 PF01783 Ribosomal L32p protein family AL474_01670 PF02504 Fatty acid synthesis protein AL474_01675 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL474_01675 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL474_01680 PF00698 Acyl transferase domain AL474_01690 PF00550 Phosphopantetheine attachment site AL474_01695 PF02801 Beta-ketoacyl synthase, C-terminal domain AL474_01695 PF00109 Beta-ketoacyl synthase, N-terminal domain AL474_01705 PF08281 Sigma-70, region 4 AL474_01705 PF04542 Sigma-70 region 2 AL474_01720 PF13180 PDZ domain AL474_01720 PF17820 PDZ domain AL474_01725 PF03144 Elongation factor Tu domain 2 AL474_01725 PF00679 Elongation factor G C-terminus AL474_01725 PF00009 Elongation factor Tu GTP binding domain AL474_01725 PF06421 GTP-binding protein LepA C-terminus AL474_01730 PF10502 Signal peptidase, peptidase S26 AL474_01735 PF00035 Double-stranded RNA binding motif AL474_01735 PF14622 Ribonuclease-III-like AL474_01740 PF01926 50S ribosome-binding GTPase AL474_01740 PF07650 KH domain AL474_01745 PF02565 Recombination protein O C terminal AL474_01745 PF11967 Recombination protein O N terminal AL474_01770 PF03401 Tripartite tricarboxylate transporter family receptor AL474_01775 PF01027 Inhibitor of apoptosis-promoting Bax1 AL474_01785 PF04364 DNA polymerase III chi subunit, HolC AL474_01790 PF02789 Cytosol aminopeptidase family, N-terminal domain AL474_01790 PF00883 Cytosol aminopeptidase family, catalytic domain AL474_01800 PF03466 LysR substrate binding domain AL474_01800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_01810 PF00171 Aldehyde dehydrogenase family AL474_01815 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_01815 PF03466 LysR substrate binding domain AL474_01830 PF00877 NlpC/P60 family AL474_01840 PF03928 Haem-degrading AL474_01850 PF16177 Acetyl-coenzyme A synthetase N-terminus AL474_01850 PF00501 AMP-binding enzyme AL474_01850 PF13193 AMP-binding enzyme C-terminal domain AL474_01855 PF00892 EamA-like transporter family AL474_01860 PF01212 Beta-eliminating lyase AL474_01895 PF01144 Coenzyme A transferase AL474_01905 PF01112 Asparaginase AL474_01910 PF00005 ABC transporter AL474_01910 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL474_01915 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL474_01920 PF00528 Binding-protein-dependent transport system inner membrane component AL474_01925 PF12911 N-terminal TM domain of oligopeptide transport permease C AL474_01925 PF00528 Binding-protein-dependent transport system inner membrane component AL474_01930 PF03576 Peptidase family S58 AL474_01950 PF06418 CTP synthase N-terminus AL474_01950 PF00117 Glutamine amidotransferase class-I AL474_01955 PF00793 DAHP synthetase I family AL474_01965 PF03952 Enolase, N-terminal domain AL474_01965 PF00113 Enolase, C-terminal TIM barrel domain AL474_01970 PF04977 Septum formation initiator AL474_01975 PF00211 Adenylate and Guanylate cyclase catalytic domain AL474_02000 PF01430 Hsp33 protein AL474_02010 PF00501 AMP-binding enzyme AL474_02010 PF16177 Acetyl-coenzyme A synthetase N-terminus AL474_02010 PF13193 AMP-binding enzyme C-terminal domain AL474_02030 PF02926 THUMP domain AL474_02030 PF01170 Putative RNA methylase family UPF0020 AL474_02040 PF03972 MmgE/PrpD family AL474_02045 PF04303 PrpF protein AL474_02050 PF00694 Aconitase C-terminal domain AL474_02050 PF00330 Aconitase family (aconitate hydratase) AL474_02055 PF00285 Citrate synthase, C-terminal domain AL474_02065 PF02866 lactate/malate dehydrogenase, alpha/beta C-terminal domain AL474_02065 PF00056 lactate/malate dehydrogenase, NAD binding domain AL474_02070 PF00392 Bacterial regulatory proteins, gntR family AL474_02070 PF07702 UTRA domain AL474_02075 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AL474_02080 PF01127 Succinate dehydrogenase/Fumarate reductase transmembrane subunit AL474_02085 PF00890 FAD binding domain AL474_02085 PF02910 Fumarate reductase flavoprotein C-term AL474_02090 PF13085 2Fe-2S iron-sulfur cluster binding domain AL474_02095 PF03937 Flavinator of succinate dehydrogenase AL474_02100 PF00285 Citrate synthase, C-terminal domain AL474_02120 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL474_02130 PF03480 Bacterial extracellular solute-binding protein, family 7 AL474_02150 PF13416 Bacterial extracellular solute-binding protein AL474_02155 PF08402 TOBE domain AL474_02155 PF00005 ABC transporter AL474_02160 PF00528 Binding-protein-dependent transport system inner membrane component AL474_02165 PF00528 Binding-protein-dependent transport system inner membrane component AL474_02175 PF02245 Methylpurine-DNA glycosylase (MPG) AL474_02190 PF18158 Adaptive response protein AidB N-terminal domain AL474_02190 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL474_02190 PF02770 Acyl-CoA dehydrogenase, middle domain AL474_02195 PF06026 Ribose 5-phosphate isomerase A (phosphoriboisomerase A) AL474_02200 PF01895 PhoU domain AL474_02210 PF04362 Bacterial Fe(2+) trafficking AL474_02215 PF00583 Acetyltransferase (GNAT) family AL474_02215 PF00696 Amino acid kinase family AL474_02220 PF11898 Domain of unknown function (DUF3418) AL474_02220 PF00271 Helicase conserved C-terminal domain AL474_02220 PF04408 Helicase associated domain (HA2) AL474_02220 PF00270 DEAD/DEAH box helicase AL474_02220 PF07717 Oligonucleotide/oligosaccharide-binding (OB)-fold AL474_02230 PF14579 Helix-hairpin-helix motif AL474_02230 PF02811 PHP domain AL474_02230 PF01336 OB-fold nucleic acid binding domain AL474_02230 PF07733 Bacterial DNA polymerase III alpha NTPase domain AL474_02230 PF17657 Bacterial DNA polymerase III alpha subunit finger domain AL474_02235 PF00534 Glycosyl transferases group 1 AL474_02235 PF13439 Glycosyltransferase Family 4 AL474_02240 PF01522 Polysaccharide deacetylase AL474_02245 PF00535 Glycosyl transferase family 2 AL474_02250 PF13439 Glycosyltransferase Family 4 AL474_02250 PF00534 Glycosyl transferases group 1 AL474_02255 PF00884 Sulfatase AL474_02270 PF03692 Putative zinc- or iron-chelating domain AL474_02280 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL474_02285 PF00005 ABC transporter AL474_02285 PF00664 ABC transporter transmembrane region AL474_02290 PF07690 Major Facilitator Superfamily AL474_02305 PF00575 S1 RNA binding domain AL474_02305 PF10150 Ribonuclease E/G family AL474_02345 PF03797 Autotransporter beta-domain AL474_02345 PF03212 Pertactin AL474_02350 PF02545 Maf-like protein AL474_02355 PF02590 Predicted SPOUT methyltransferase AL474_02365 PF01467 Cytidylyltransferase-like AL474_02370 PF01218 Coproporphyrinogen III oxidase AL474_02375 PF01071 Phosphoribosylglycinamide synthetase, ATP-grasp (A) domain AL474_02375 PF02843 Phosphoribosylglycinamide synthetase, C domain AL474_02375 PF02844 Phosphoribosylglycinamide synthetase, N domain AL474_02380 PF01709 Transcriptional regulator AL474_02385 PF05872 Bacterial protein of unknown function (DUF853) AL474_02390 PF01235 Sodium:alanine symporter family AL474_02395 PF00202 Aminotransferase class-III AL474_02400 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL474_02405 PF00171 Aldehyde dehydrogenase family AL474_02415 PF07687 Peptidase dimerisation domain AL474_02415 PF01546 Peptidase family M20/M25/M40 AL474_02420 PF00850 Histone deacetylase domain AL474_02425 PF07883 Cupin domain AL474_02430 PF00202 Aminotransferase class-III AL474_02440 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL474_02440 PF00005 ABC transporter AL474_02445 PF00528 Binding-protein-dependent transport system inner membrane component AL474_02445 PF12911 N-terminal TM domain of oligopeptide transport permease C AL474_02450 PF00528 Binding-protein-dependent transport system inner membrane component AL474_02455 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL474_02460 PF00155 Aminotransferase class I and II AL474_02460 PF00392 Bacterial regulatory proteins, gntR family AL474_02465 PF00180 Isocitrate/isopropylmalate dehydrogenase AL474_02470 PF07690 Major Facilitator Superfamily AL474_02475 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL474_02475 PF00529 HlyD membrane-fusion protein of T1SS AL474_02485 PF01047 MarR family AL474_02495 PF00892 EamA-like transporter family AL474_02500 PF00107 Zinc-binding dehydrogenase AL474_02500 PF08240 Alcohol dehydrogenase GroES-like domain AL474_02505 PF01435 Peptidase family M48 AL474_02515 PF00581 Rhodanese-like domain AL474_02525 PF03466 LysR substrate binding domain AL474_02525 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_02530 PF00005 ABC transporter AL474_02530 PF08402 TOBE domain AL474_02535 PF00528 Binding-protein-dependent transport system inner membrane component AL474_02540 PF13419 Haloacid dehalogenase-like hydrolase AL474_02570 PF00860 Permease family AL474_02575 PF02203 Tar ligand binding domain homologue AL474_02575 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL474_02575 PF00672 HAMP domain AL474_02580 PF03449 Transcription elongation factor, N-terminal AL474_02580 PF01272 Transcription elongation factor, GreA/GreB, C-term AL474_02610 PF00771 FHIPEP family AL474_02675 PF01514 Secretory protein of YscJ/FliF family AL474_02685 PF02108 Flagellar assembly protein FliH AL474_02690 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL474_02690 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL474_02690 PF18269 T3SS EscN ATPase C-terminal domain AL474_02705 PF01052 Type III flagellar switch regulator (C-ring) FliN C-term AL474_02710 PF00813 FliP family AL474_02715 PF01313 Bacterial export proteins, family 3 AL474_02720 PF01311 Bacterial export proteins, family 1 AL474_02725 PF01312 FlhB HrpN YscU SpaS Family AL474_02740 PF08281 Sigma-70, region 4 AL474_02740 PF04542 Sigma-70 region 2 AL474_02760 PF00672 HAMP domain AL474_02760 PF07228 Stage II sporulation protein E (SpoIIE) AL474_02770 PF01168 Alanine racemase, N-terminal domain AL474_02770 PF00842 Alanine racemase, C-terminal domain AL474_02775 PF13581 Histidine kinase-like ATPase domain AL474_02780 PF01740 STAS domain AL474_02785 PF13396 Phospholipase_D-nuclease N-terminal AL474_02785 PF13091 PLD-like domain AL474_02795 PF03797 Autotransporter beta-domain AL474_02815 PF16868 NMT1-like family AL474_02820 PF00202 Aminotransferase class-III AL474_02830 PF12802 MarR family AL474_02835 PF00583 Acetyltransferase (GNAT) family AL474_02845 PF01205 Uncharacterized protein family UPF0029 AL474_02850 PF00085 Thioredoxin AL474_02860 PF00860 Permease family AL474_02865 PF00814 Glycoprotease family AL474_02875 PF02660 Glycerol-3-phosphate acyltransferase AL474_02880 PF01975 Survival protein SurE AL474_02890 PF01551 Peptidase family M23 AL474_02890 PF01476 LysM domain AL474_02910 PF05958 tRNA (Uracil-5-)-methyltransferase AL474_02915 PF00376 MerR family regulatory protein AL474_02915 PF09278 MerR, DNA binding AL474_02925 PF08534 Redoxin AL474_02925 PF00462 Glutaredoxin AL474_02930 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL474_02930 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL474_02935 PF04378 Ribosomal RNA large subunit methyltransferase D, RlmJ AL474_02940 PF03009 Glycerophosphoryl diester phosphodiesterase family AL474_02945 PF13145 PPIC-type PPIASE domain AL474_02950 PF13472 GDSL-like Lipase/Acylhydrolase family AL474_02955 PF00005 ABC transporter AL474_02970 PF04972 BON domain AL474_02980 PF05532 CsbD-like AL474_03010 PF04305 Protein of unknown function (DUF455) AL474_03015 PF13406 Transglycosylase SLT domain AL474_03030 PF01037 Lrp/AsnC ligand binding domain AL474_03040 PF04127 DNA / pantothenate metabolism flavoprotein AL474_03040 PF02441 Flavoprotein AL474_03045 PF01252 Signal peptidase (SPase) II AL474_03050 PF06827 Zinc finger found in FPG and IleRS AL474_03050 PF08264 Anticodon-binding domain of tRNA AL474_03050 PF00133 tRNA synthetases class I (I, L, M and V) AL474_03055 PF01687 Riboflavin kinase AL474_03055 PF06574 FAD synthetase AL474_03060 PF00551 Formyl transferase AL474_03080 PF00580 UvrD/REP helicase N-terminal domain AL474_03080 PF13361 UvrD-like helicase C-terminal domain AL474_03085 PF07715 TonB-dependent Receptor Plug Domain AL474_03090 PF12848 ABC transporter AL474_03090 PF00005 ABC transporter AL474_03095 PF05175 Methyltransferase small domain AL474_03100 PF01546 Peptidase family M20/M25/M40 AL474_03100 PF07687 Peptidase dimerisation domain AL474_03105 PF00132 Bacterial transferase hexapeptide (six repeats) AL474_03105 PF14602 Hexapeptide repeat of succinyl-transferase AL474_03105 PF14805 Tetrahydrodipicolinate N-succinyltransferase N-terminal AL474_03140 PF00313 'Cold-shock' DNA-binding domain AL474_03150 PF00313 'Cold-shock' DNA-binding domain AL474_03155 PF03350 Uncharacterized protein family, UPF0114 AL474_03160 PF00254 FKBP-type peptidyl-prolyl cis-trans isomerase AL474_03160 PF05697 Bacterial trigger factor protein (TF) AL474_03160 PF05698 Bacterial trigger factor protein (TF) C-terminus AL474_03165 PF00574 Clp protease AL474_03170 PF06689 ClpX C4-type zinc finger AL474_03170 PF10431 C-terminal, D2-small domain, of ClpB protein AL474_03170 PF07724 AAA domain (Cdc48 subfamily) AL474_03175 PF05362 Lon protease (S16) C-terminal proteolytic domain AL474_03175 PF00004 ATPase family associated with various cellular activities (AAA) AL474_03175 PF02190 ATP-dependent protease La (LON) substrate-binding domain AL474_03180 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_03180 PF03466 LysR substrate binding domain AL474_03185 PF02515 CoA-transferase family III AL474_03190 PF03401 Tripartite tricarboxylate transporter family receptor AL474_03200 PF00378 Enoyl-CoA hydratase/isomerase AL474_03210 PF00108 Thiolase, N-terminal domain AL474_03210 PF02803 Thiolase, C-terminal domain AL474_03230 PF01144 Coenzyme A transferase AL474_03235 PF01144 Coenzyme A transferase AL474_03240 PF03401 Tripartite tricarboxylate transporter family receptor AL474_03265 PF00717 Peptidase S24-like AL474_03265 PF01726 LexA DNA binding domain AL474_03270 PF00155 Aminotransferase class I and II AL474_03275 PF00271 Helicase conserved C-terminal domain AL474_03275 PF12344 Ultra-violet resistance protein B AL474_03275 PF17757 UvrB interaction domain AL474_03275 PF04851 Type III restriction enzyme, res subunit AL474_03275 PF02151 UvrB/uvrC motif AL474_03280 PF01451 Low molecular weight phosphotyrosine protein phosphatase AL474_03285 PF02082 Transcriptional regulator AL474_03290 PF00266 Aminotransferase class-V AL474_03295 PF01592 NifU-like N terminal domain AL474_03300 PF01521 Iron-sulphur cluster biosynthesis AL474_03305 PF07743 HSCB C-terminal oligomerisation domain AL474_03310 PF00012 Hsp70 protein AL474_03315 PF00111 2Fe-2S iron-sulfur cluster binding domain AL474_03320 PF04384 Iron-sulphur cluster assembly AL474_03325 PF02142 MGS-like domain AL474_03335 PF00378 Enoyl-CoA hydratase/isomerase AL474_03350 PF17042 Nucleotide-binding C-terminal domain AL474_03350 PF07005 Sugar-binding N-terminal domain AL474_03370 PF02261 Aspartate decarboxylase AL474_03375 PF00175 Oxidoreductase NAD-binding domain AL474_03375 PF00970 Oxidoreductase FAD-binding domain AL474_03375 PF00111 2Fe-2S iron-sulfur cluster binding domain AL474_03380 PF01266 FAD dependent oxidoreductase AL474_03385 PF13416 Bacterial extracellular solute-binding protein AL474_03390 PF03466 LysR substrate binding domain AL474_03390 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_03405 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL474_03410 PF00528 Binding-protein-dependent transport system inner membrane component AL474_03415 PF00528 Binding-protein-dependent transport system inner membrane component AL474_03420 PF00005 ABC transporter AL474_03420 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL474_03425 PF01425 Amidase AL474_03470 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL474_03470 PF02272 DHHA1 domain AL474_03470 PF01411 tRNA synthetases class II (A) AL474_03475 PF01206 Sulfurtransferase TusA AL474_03485 PF00886 Ribosomal protein S16 AL474_03490 PF01782 RimM N-terminal domain AL474_03495 PF01746 tRNA (Guanine-1)-methyltransferase AL474_03500 PF00266 Aminotransferase class-V AL474_03520 PF00512 His Kinase A (phospho-acceptor) domain AL474_03520 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL474_03520 PF08521 Two-component sensor kinase N-terminal AL474_03535 PF00133 tRNA synthetases class I (I, L, M and V) AL474_03535 PF08264 Anticodon-binding domain of tRNA AL474_03535 PF10458 Valyl tRNA synthetase tRNA binding arm AL474_03540 PF00334 Nucleoside diphosphate kinase AL474_03545 PF04055 Radical SAM superfamily AL474_03555 PF04551 GcpE protein AL474_03560 PF03129 Anticodon binding domain AL474_03560 PF13393 Histidyl-tRNA synthetase AL474_03565 PF09976 Tetratricopeptide repeat-like domain AL474_03570 PF13360 PQQ-like domain AL474_03575 PF14714 KH-domain-like of EngA bacterial GTPase enzymes, C-terminal AL474_03575 PF01926 50S ribosome-binding GTPase AL474_03580 PF00155 Aminotransferase class I and II AL474_03585 PF17209 Hfq protein AL474_03590 PF01926 50S ribosome-binding GTPase AL474_03590 PF16360 GTP-binding GTPase Middle Region AL474_03590 PF13167 GTP-binding GTPase N-terminal AL474_03595 PF01145 SPFH domain / Band 7 family AL474_03595 PF12221 Bacterial membrane protein N terminal AL474_03600 PF01145 SPFH domain / Band 7 family AL474_03605 PF13393 Histidyl-tRNA synthetase AL474_03610 PF00709 Adenylosuccinate synthetase AL474_03620 PF01165 Ribosomal protein S21 AL474_03625 PF01807 CHC2 zinc finger AL474_03625 PF08275 DNA primase catalytic core, N-terminal domain AL474_03625 PF08278 DNA primase DnaG DnaB-binding AL474_03625 PF10410 DnaB-helicase binding domain of primase AL474_03630 PF03979 Sigma-70 factor, region 1.1 AL474_03630 PF00140 Sigma-70 factor, region 1.2 AL474_03630 PF04542 Sigma-70 region 2 AL474_03630 PF04539 Sigma-70 region 3 AL474_03630 PF04545 Sigma-70, region 4 AL474_03630 PF04546 Sigma-70, non-essential region AL474_03660 PF01594 AI-2E family transporter AL474_03665 PF01061 ABC-2 type transporter AL474_03670 PF00005 ABC transporter AL474_03695 PF11614 IG-like fold at C-terminal of FixG, putative oxidoreductase AL474_03695 PF12801 4Fe-4S binding domain AL474_03695 PF13746 4Fe-4S dicluster domain AL474_03700 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL474_03700 PF14715 N-terminal domain of cytochrome oxidase-cbb3, FixP AL474_03735 PF00202 Aminotransferase class-III AL474_03750 PF13649 Methyltransferase domain AL474_03755 PF03788 LrgA family AL474_03770 PF01590 GAF domain AL474_03770 PF02954 Bacterial regulatory protein, Fis family AL474_03770 PF00158 Sigma-54 interaction domain AL474_03775 PF00171 Aldehyde dehydrogenase family AL474_03790 PF04286 Protein of unknown function (DUF445) AL474_03795 PF03466 LysR substrate binding domain AL474_03795 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_03800 PF02567 Phenazine biosynthesis-like protein AL474_03805 PF07237 Protein of unknown function (DUF1428) AL474_03810 PF12833 Helix-turn-helix domain AL474_03810 PF02805 Metal binding domain of Ada AL474_03820 PF03625 Domain of unknown function DUF302 AL474_03820 PF02537 CrcB-like protein, Camphor Resistance (CrcB) AL474_03840 PF00916 Sulfate permease family AL474_03840 PF01740 STAS domain AL474_03865 PF00664 ABC transporter transmembrane region AL474_03865 PF00005 ABC transporter AL474_03890 PF07690 Major Facilitator Superfamily AL474_03910 PF12833 Helix-turn-helix domain AL474_03910 PF06719 AraC-type transcriptional regulator N-terminus AL474_03920 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AL474_03925 PF00111 2Fe-2S iron-sulfur cluster binding domain AL474_03925 PF01799 [2Fe-2S] binding domain AL474_03935 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_03935 PF03466 LysR substrate binding domain AL474_03960 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL474_03960 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL474_03985 PF03401 Tripartite tricarboxylate transporter family receptor AL474_03990 PF01522 Polysaccharide deacetylase AL474_04000 PF01425 Amidase AL474_04005 PF01425 Amidase AL474_04040 PF01152 Bacterial-like globin AL474_04060 PF03401 Tripartite tricarboxylate transporter family receptor AL474_04065 PF03466 LysR substrate binding domain AL474_04065 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_04080 PF00108 Thiolase, N-terminal domain AL474_04080 PF02803 Thiolase, C-terminal domain AL474_04085 PF00501 AMP-binding enzyme AL474_04085 PF14535 AMP-binding enzyme C-terminal domain AL474_04095 PF02515 CoA-transferase family III AL474_04100 PF00111 2Fe-2S iron-sulfur cluster binding domain AL474_04110 PF00378 Enoyl-CoA hydratase/isomerase AL474_04115 PF00866 Ring hydroxylating beta subunit AL474_04120 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AL474_04120 PF00355 Rieske [2Fe-2S] domain AL474_04125 PF13458 Periplasmic binding protein AL474_04130 PF02653 Branched-chain amino acid transport system / permease component AL474_04150 PF00463 Isocitrate lyase family AL474_04155 PF14819 Nitrile reductase, 7-cyano-7-deazaguanine-reductase N-term AL474_04155 PF14489 QueF-like protein AL474_04170 PF01066 CDP-alcohol phosphatidyltransferase AL474_04175 PF08459 UvrC Helix-hairpin-helix N-terminal AL474_04175 PF02151 UvrB/uvrC motif AL474_04175 PF01541 GIY-YIG catalytic domain AL474_04180 PF00933 Glycosyl hydrolase family 3 N terminal domain AL474_04185 PF01648 4'-phosphopantetheinyl transferase superfamily AL474_04190 PF03740 Pyridoxal phosphate biosynthesis protein PdxJ AL474_04200 PF00873 AcrB/AcrD/AcrF family AL474_04205 PF00529 HlyD membrane-fusion protein of T1SS AL474_04205 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL474_04225 PF03459 TOBE domain AL474_04225 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_04230 PF00005 ABC transporter AL474_04245 PF00080 Copper/zinc superoxide dismutase (SODC) AL474_04250 PF03401 Tripartite tricarboxylate transporter family receptor AL474_04260 PF00378 Enoyl-CoA hydratase/isomerase AL474_04270 PF00392 Bacterial regulatory proteins, gntR family AL474_04270 PF07729 FCD domain AL474_04280 PF00108 Thiolase, N-terminal domain AL474_04280 PF02803 Thiolase, C-terminal domain AL474_04285 PF01361 Tautomerase enzyme AL474_04290 PF00005 ABC transporter AL474_04290 PF00571 CBS domain AL474_04295 PF00528 Binding-protein-dependent transport system inner membrane component AL474_04315 PF07690 Major Facilitator Superfamily AL474_04320 PF00830 Ribosomal L28 family AL474_04325 PF00471 Ribosomal protein L33 AL474_04330 PF00916 Sulfate permease family AL474_04330 PF01740 STAS domain AL474_04350 PF01047 MarR family AL474_04355 PF07690 Major Facilitator Superfamily AL474_04360 PF13603 Leucyl-tRNA synthetase, Domain 2 AL474_04360 PF08264 Anticodon-binding domain of tRNA AL474_04360 PF09334 tRNA synthetases class I (M) AL474_04360 PF00133 tRNA synthetases class I (I, L, M and V) AL474_04375 PF00171 Aldehyde dehydrogenase family AL474_04385 PF01425 Amidase AL474_04390 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AL474_04390 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AL474_04435 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_04435 PF03466 LysR substrate binding domain AL474_04445 PF02550 Acetyl-CoA hydrolase/transferase N-terminal domain AL474_04445 PF13336 Acetyl-CoA hydrolase/transferase C-terminal domain AL474_04450 PF03466 LysR substrate binding domain AL474_04450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_04465 PF01925 Sulfite exporter TauE/SafE AL474_04470 PF00892 EamA-like transporter family AL474_04495 PF11791 Aconitate B N-terminal domain AL474_04495 PF00330 Aconitase family (aconitate hydratase) AL474_04495 PF06434 Aconitate hydratase 2 N-terminus AL474_04505 PF00691 OmpA family AL474_04520 PF00593 TonB dependent receptor AL474_04520 PF07715 TonB-dependent Receptor Plug Domain AL474_04530 PF00694 Aconitase C-terminal domain AL474_04530 PF00330 Aconitase family (aconitate hydratase) AL474_04535 PF02900 Catalytic LigB subunit of aromatic ring-opening dioxygenase AL474_04550 PF09285 Elongation factor P, C-terminal AL474_04550 PF08207 Elongation factor P (EF-P) KOW-like domain AL474_04550 PF01132 Elongation factor P (EF-P) OB domain AL474_04555 PF00034 Cytochrome c AL474_04565 PF08281 Sigma-70, region 4 AL474_04565 PF04542 Sigma-70 region 2 AL474_04580 PF00158 Sigma-54 interaction domain AL474_04580 PF00072 Response regulator receiver domain AL474_04580 PF02954 Bacterial regulatory protein, Fis family AL474_04615 PF13629 Pilus formation protein N terminal region AL474_04615 PF00263 Bacterial type II and III secretion system protein AL474_04615 PF04972 BON domain AL474_04645 PF03707 Bacterial signalling protein N terminal repeat AL474_04645 PF00563 EAL domain AL474_04645 PF00990 Diguanylate cyclase, GGDEF domain AL474_04650 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AL474_04650 PF08479 POTRA domain, ShlB-type AL474_04665 PF01047 MarR family AL474_04670 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL474_04670 PF00005 ABC transporter AL474_04675 PF00528 Binding-protein-dependent transport system inner membrane component AL474_04675 PF12911 N-terminal TM domain of oligopeptide transport permease C AL474_04680 PF00528 Binding-protein-dependent transport system inner membrane component AL474_04685 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL474_04695 PF01544 CorA-like Mg2+ transporter protein AL474_04700 PF13361 UvrD-like helicase C-terminal domain AL474_04700 PF00580 UvrD/REP helicase N-terminal domain AL474_04715 PF00202 Aminotransferase class-III AL474_04720 PF00171 Aldehyde dehydrogenase family AL474_04725 PF00459 Inositol monophosphatase family AL474_04730 PF02146 Sir2 family AL474_04740 PF00132 Bacterial transferase hexapeptide (six repeats) AL474_04750 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL474_04750 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL474_04750 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL474_04750 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL474_04760 PF00196 Bacterial regulatory proteins, luxR family AL474_04760 PF00072 Response regulator receiver domain AL474_04765 PF12802 MarR family AL474_04785 PF01522 Polysaccharide deacetylase AL474_04785 PF14883 Hypothetical glycosyl hydrolase family 13 AL474_04790 PF00535 Glycosyl transferase family 2 AL474_04800 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL474_04825 PF01042 Endoribonuclease L-PSP AL474_04830 PF03401 Tripartite tricarboxylate transporter family receptor AL474_04835 PF13380 CoA binding domain AL474_04840 PF09339 IclR helix-turn-helix domain AL474_04840 PF01614 Bacterial transcriptional regulator AL474_04845 PF00724 NADH:flavin oxidoreductase / NADH oxidase family AL474_04845 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL474_04855 PF08402 TOBE domain AL474_04855 PF00005 ABC transporter AL474_04860 PF00528 Binding-protein-dependent transport system inner membrane component AL474_04865 PF00528 Binding-protein-dependent transport system inner membrane component AL474_04885 PF03466 LysR substrate binding domain AL474_04885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_04900 PF01958 Domain of unknown function DUF108 AL474_04900 PF03447 Homoserine dehydrogenase, NAD binding domain AL474_04910 PF03480 Bacterial extracellular solute-binding protein, family 7 AL474_04915 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL474_04920 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AL474_04925 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AL474_04925 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AL474_04950 PF13840 ACT domain AL474_04950 PF00696 Amino acid kinase family AL474_04950 PF01842 ACT domain AL474_04955 PF01171 PP-loop family AL474_04955 PF09179 TilS substrate binding domain AL474_04965 PF03255 Acetyl co-enzyme A carboxylase carboxyltransferase alpha subunit AL474_04970 PF00730 HhH-GPD superfamily base excision DNA repair protein AL474_04970 PF06029 AlkA N-terminal domain AL474_04970 PF12833 Helix-turn-helix domain AL474_04970 PF02805 Metal binding domain of Ada AL474_04975 PF09190 DALR domain AL474_04975 PF01406 tRNA synthetases class I (C) catalytic domain AL474_04985 PF00160 Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD AL474_04990 PF00149 Calcineurin-like phosphoesterase AL474_04995 PF02673 Bacitracin resistance protein BacA AL474_05000 PF03471 Transporter associated domain AL474_05000 PF03741 Integral membrane protein TerC family AL474_05005 PF00459 Inositol monophosphatase family AL474_05010 PF00588 SpoU rRNA Methylase family AL474_05015 PF03401 Tripartite tricarboxylate transporter family receptor AL474_05025 PF05552 Conserved TM helix AL474_05025 PF00924 Mechanosensitive ion channel AL474_05040 PF01968 Hydantoinase/oxoprolinase AL474_05040 PF05378 Hydantoinase/oxoprolinase N-terminal region AL474_05075 PF03480 Bacterial extracellular solute-binding protein, family 7 AL474_05090 PF17287 POTRA domain AL474_05090 PF03865 Haemolysin secretion/activation protein ShlB/FhaC/HecB AL474_05090 PF08479 POTRA domain, ShlB-type AL474_05095 PF00419 Fimbrial protein AL474_05100 PF13954 PapC N-terminal domain AL474_05100 PF00577 Outer membrane usher protein AL474_05100 PF13953 PapC C-terminal domain AL474_05105 PF02753 Pili assembly chaperone PapD, C-terminal domain AL474_05105 PF00345 Pili and flagellar-assembly chaperone, PapD N-terminal domain AL474_05110 PF05594 Haemagluttinin repeat AL474_05110 PF13018 Extended Signal Peptide of Type V secretion system AL474_05110 PF13332 Hemagglutinin repeat AL474_05110 PF05860 haemagglutination activity domain AL474_05115 PF00196 Bacterial regulatory proteins, luxR family AL474_05115 PF00072 Response regulator receiver domain AL474_05120 PF00512 His Kinase A (phospho-acceptor) domain AL474_05120 PF01627 Hpt domain AL474_05120 PF00989 PAS fold AL474_05120 PF00072 Response regulator receiver domain AL474_05120 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL474_05120 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL474_05130 PF07286 Protein of unknown function (DUF1445) AL474_05135 PF01425 Amidase AL474_05160 PF00392 Bacterial regulatory proteins, gntR family AL474_05160 PF07729 FCD domain AL474_05165 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AL474_05165 PF03480 Bacterial extracellular solute-binding protein, family 7 AL474_05175 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL474_05185 PF00205 Thiamine pyrophosphate enzyme, central domain AL474_05185 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL474_05185 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL474_05190 PF07687 Peptidase dimerisation domain AL474_05190 PF01546 Peptidase family M20/M25/M40 AL474_05200 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AL474_05200 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AL474_05210 PF00005 ABC transporter AL474_05220 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL474_05235 PF01026 TatD related DNase AL474_05240 PF12169 DNA polymerase III subunits gamma and tau domain III AL474_05245 PF02223 Thymidylate kinase AL474_05250 PF02618 YceG-like family AL474_05255 PF01571 Aminomethyltransferase folate-binding domain AL474_05270 PF01266 FAD dependent oxidoreductase AL474_05275 PF02082 Transcriptional regulator AL474_05280 PF00175 Oxidoreductase NAD-binding domain AL474_05280 PF00970 Oxidoreductase FAD-binding domain AL474_05280 PF00042 Globin AL474_05310 PF00005 ABC transporter AL474_05315 PF00005 ABC transporter AL474_05315 PF12848 ABC transporter AL474_05320 PF03480 Bacterial extracellular solute-binding protein, family 7 AL474_05330 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL474_05335 PF00378 Enoyl-CoA hydratase/isomerase AL474_05340 PF02016 LD-carboxypeptidase N-terminal domain AL474_05340 PF17676 LD-carboxypeptidase C-terminal domain AL474_05345 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL474_05370 PF04066 Multiple resistance and pH regulation protein F (MrpF / PhaF) AL474_05375 PF01899 Na+/H+ ion antiporter subunit AL474_05380 PF00361 Proton-conducting membrane transporter AL474_05385 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AL474_05390 PF00361 Proton-conducting membrane transporter AL474_05390 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AL474_05390 PF04039 Domain related to MnhB subunit of Na+/H+ antiporter AL474_05390 PF13244 Domain of unknown function (DUF4040) AL474_05410 PF03466 LysR substrate binding domain AL474_05410 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_05420 PF03401 Tripartite tricarboxylate transporter family receptor AL474_05445 PF03358 NADPH-dependent FMN reductase AL474_05470 PF03401 Tripartite tricarboxylate transporter family receptor AL474_05475 PF03466 LysR substrate binding domain AL474_05475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_05480 PF03401 Tripartite tricarboxylate transporter family receptor AL474_05495 PF01557 Fumarylacetoacetate (FAA) hydrolase family AL474_05500 PF01070 FMN-dependent dehydrogenase AL474_05510 PF03401 Tripartite tricarboxylate transporter family receptor AL474_05515 PF03466 LysR substrate binding domain AL474_05515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_05525 PF02798 Glutathione S-transferase, N-terminal domain AL474_05525 PF00043 Glutathione S-transferase, C-terminal domain AL474_05535 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA AL474_05545 PF00072 Response regulator receiver domain AL474_05545 PF00196 Bacterial regulatory proteins, luxR family AL474_05570 PF00884 Sulfatase AL474_05600 PF17863 AAA lid domain AL474_05600 PF07726 ATPase family associated with various cellular activities (AAA) AL474_05615 PF03401 Tripartite tricarboxylate transporter family receptor AL474_05625 PF03741 Integral membrane protein TerC family AL474_05640 PF12399 Branched-chain amino acid ATP-binding cassette transporter AL474_05640 PF00005 ABC transporter AL474_05645 PF00005 ABC transporter AL474_05670 PF00106 short chain dehydrogenase AL474_05680 PF05159 Capsule polysaccharide biosynthesis protein AL474_05685 PF05159 Capsule polysaccharide biosynthesis protein AL474_05690 PF01370 NAD dependent epimerase/dehydratase family AL474_05695 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AL474_05695 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AL474_05695 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AL474_05700 PF02563 Polysaccharide biosynthesis/export protein AL474_05710 PF00534 Glycosyl transferases group 1 AL474_05720 PF00005 ABC transporter AL474_05745 PF00210 Ferritin-like domain AL474_05750 PF00171 Aldehyde dehydrogenase family AL474_05755 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_05755 PF03466 LysR substrate binding domain AL474_05760 PF03466 LysR substrate binding domain AL474_05760 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_05765 PF00270 DEAD/DEAH box helicase AL474_05765 PF17191 RecG wedge domain AL474_05765 PF00271 Helicase conserved C-terminal domain AL474_05770 PF01042 Endoribonuclease L-PSP AL474_05780 PF00248 Aldo/keto reductase family AL474_05790 PF03466 LysR substrate binding domain AL474_05790 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_05795 PF00970 Oxidoreductase FAD-binding domain AL474_05795 PF00175 Oxidoreductase NAD-binding domain AL474_05805 PF00528 Binding-protein-dependent transport system inner membrane component AL474_05810 PF08402 TOBE domain AL474_05810 PF00005 ABC transporter AL474_05820 PF02678 Pirin AL474_05820 PF05726 Pirin C-terminal cupin domain AL474_05825 PF02678 Pirin AL474_05825 PF17954 Quercetinase C-terminal cupin domain AL474_05830 PF03466 LysR substrate binding domain AL474_05830 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_05835 PF00158 Sigma-54 interaction domain AL474_05835 PF00072 Response regulator receiver domain AL474_05835 PF02954 Bacterial regulatory protein, Fis family AL474_05840 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL474_05840 PF00512 His Kinase A (phospho-acceptor) domain AL474_05840 PF00989 PAS fold AL474_05850 PF06969 HemN C-terminal domain AL474_05850 PF04055 Radical SAM superfamily AL474_05860 PF01725 Ham1 family AL474_05865 PF17154 Gammaproteobacterial periplasmic sensor domain AL474_05865 PF00990 Diguanylate cyclase, GGDEF domain AL474_05865 PF00563 EAL domain AL474_05865 PF00672 HAMP domain AL474_05880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_05880 PF03466 LysR substrate binding domain AL474_05890 PF03725 3' exoribonuclease family, domain 2 AL474_05890 PF01138 3' exoribonuclease family, domain 1 AL474_05895 PF03755 YicC-like family, N-terminal region AL474_05895 PF08340 Domain of unknown function (DUF1732) AL474_05915 PF10423 Bacterial AMP nucleoside phosphorylase N-terminus AL474_05915 PF01048 Phosphorylase superfamily AL474_05920 PF00877 NlpC/P60 family AL474_05935 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL474_05940 PF00625 Guanylate kinase AL474_05945 PF01192 RNA polymerase Rpb6 AL474_05950 PF04607 Region found in RelA / SpoT proteins AL474_05950 PF02824 TGS domain AL474_05950 PF13291 ACT domain AL474_05955 PF00005 ABC transporter AL474_05960 PF00528 Binding-protein-dependent transport system inner membrane component AL474_05965 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL474_05980 PF00701 Dihydrodipicolinate synthetase family AL474_05985 PF06804 NlpB/DapX lipoprotein AL474_05990 PF16970 Type-1 fimbrial protein, A AL474_05995 PF08007 Cupin superfamily protein AL474_06000 PF01624 MutS domain I AL474_06000 PF00488 MutS domain V AL474_06000 PF05188 MutS domain II AL474_06000 PF05192 MutS domain III AL474_06000 PF05190 MutS family domain IV AL474_06005 PF07311 Dodecin AL474_06010 PF03358 NADPH-dependent FMN reductase AL474_06045 PF01300 Telomere recombination AL474_06050 PF04228 Putative neutral zinc metallopeptidase AL474_06070 PF13662 Toprim domain AL474_06070 PF02132 RecR protein AL474_06075 PF02575 YbaB/EbfC DNA-binding family AL474_06110 PF00768 D-alanyl-D-alanine carboxypeptidase AL474_06125 PF01174 SNO glutamine amidotransferase family AL474_06130 PF04073 Aminoacyl-tRNA editing domain AL474_06135 PF02899 Phage integrase, N-terminal SAM-like domain AL474_06135 PF00589 Phage integrase family AL474_06140 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_06140 PF03466 LysR substrate binding domain AL474_06145 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL474_06145 PF00205 Thiamine pyrophosphate enzyme, central domain AL474_06145 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL474_06150 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL474_06150 PF02770 Acyl-CoA dehydrogenase, middle domain AL474_06150 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL474_06160 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL474_06160 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL474_06165 PF00005 ABC transporter AL474_06170 PF00528 Binding-protein-dependent transport system inner membrane component AL474_06175 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL474_06180 PF00491 Arginase family AL474_06185 PF09339 IclR helix-turn-helix domain AL474_06185 PF01614 Bacterial transcriptional regulator AL474_06190 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL474_06195 PF03481 Putative GTP-binding controlling metal-binding AL474_06195 PF01300 Telomere recombination AL474_06200 PF02222 ATP-grasp domain AL474_06200 PF17769 Phosphoribosylaminoimidazole carboxylase C-terminal domain AL474_06205 PF00731 AIR carboxylase AL474_06210 PF02600 Disulfide bond formation protein DsbB AL474_06220 PF15731 Antitoxin component of bacterial toxin-antitoxin system, MqsA AL474_06225 PF15723 Motility quorum-sensing regulator, toxin of MqsA AL474_06230 PF01259 SAICAR synthetase AL474_06240 PF01116 Fructose-bisphosphate aldolase class-II AL474_06255 PF03069 Acetamidase/Formamidase family AL474_06260 PF02293 AmiS/UreI family transporter AL474_06270 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL474_06270 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL474_06285 PF00005 ABC transporter AL474_06290 PF00528 Binding-protein-dependent transport system inner membrane component AL474_06295 PF00528 Binding-protein-dependent transport system inner membrane component AL474_06300 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL474_06310 PF02423 Ornithine cyclodeaminase/mu-crystallin family AL474_06325 PF00391 PEP-utilising enzyme, mobile domain AL474_06325 PF02896 PEP-utilising enzyme, TIM barrel domain AL474_06325 PF05524 PEP-utilising enzyme, N-terminal AL474_06330 PF00381 PTS HPr component phosphorylation site AL474_06340 PF02951 Prokaryotic glutathione synthetase, N-terminal domain AL474_06340 PF02955 Prokaryotic glutathione synthetase, ATP-grasp domain AL474_06345 PF00707 Translation initiation factor IF-3, C-terminal domain AL474_06345 PF05198 Translation initiation factor IF-3, N-terminal domain AL474_06350 PF03129 Anticodon binding domain AL474_06350 PF02824 TGS domain AL474_06350 PF07973 Threonyl and Alanyl tRNA synthetase second additional domain AL474_06350 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL474_06355 PF00196 Bacterial regulatory proteins, luxR family AL474_06375 PF17158 Membrane-associated sensor, integral membrane domain AL474_06375 PF00990 Diguanylate cyclase, GGDEF domain AL474_06395 PF03883 Peroxide stress protein YaaA AL474_06405 PF00106 short chain dehydrogenase AL474_06410 PF02254 TrkA-N domain AL474_06410 PF00999 Sodium/hydrogen exchanger family AL474_06420 PF13434 L-lysine 6-monooxygenase (NADPH-requiring) AL474_06450 PF07690 Major Facilitator Superfamily AL474_06455 PF07660 Secretin and TonB N terminus short domain AL474_06455 PF00593 TonB dependent receptor AL474_06455 PF07715 TonB-dependent Receptor Plug Domain AL474_06470 PF00990 Diguanylate cyclase, GGDEF domain AL474_06470 PF17151 Periplasmic sensor domain AL474_06495 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL474_06495 PF02403 Seryl-tRNA synthetase N-terminal domain AL474_06500 PF16193 AAA C-terminal domain AL474_06500 PF12002 MgsA AAA+ ATPase C terminal AL474_06500 PF00004 ATPase family associated with various cellular activities (AAA) AL474_06505 PF03548 Outer membrane lipoprotein carrier protein LolA AL474_06510 PF17854 FtsK alpha domain AL474_06510 PF01580 FtsK/SpoIIIE family AL474_06510 PF09397 Ftsk gamma domain AL474_06510 PF13491 4TM region of DNA translocase FtsK/SpoIIIE AL474_06515 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL474_06525 PF00893 Small Multidrug Resistance protein AL474_06535 PF00474 Sodium:solute symporter family AL474_06545 PF03814 Potassium-transporting ATPase A subunit AL474_06555 PF02669 K+-transporting ATPase, c chain AL474_06565 PF00486 Transcriptional regulatory protein, C terminal AL474_06565 PF00072 Response regulator receiver domain AL474_06585 PF00180 Isocitrate/isopropylmalate dehydrogenase AL474_06600 PF00034 Cytochrome c AL474_06610 PF00004 ATPase family associated with various cellular activities (AAA) AL474_06610 PF17862 AAA+ lid domain AL474_06610 PF01434 Peptidase family M41 AL474_06630 PF05193 Peptidase M16 inactive domain AL474_06630 PF00675 Insulinase (Peptidase family M16) AL474_06635 PF00684 DnaJ central domain AL474_06635 PF01556 DnaJ C terminal domain AL474_06635 PF00226 DnaJ domain AL474_06640 PF00012 Hsp70 protein AL474_06650 PF01025 GrpE AL474_06660 PF00762 Ferrochelatase AL474_06665 PF03444 Winged helix-turn-helix transcription repressor, HrcA DNA-binding AL474_06665 PF01628 HrcA protein C terminal domain AL474_06670 PF01513 ATP-NAD kinase AL474_06675 PF02463 RecF/RecN/SMC N terminal domain AL474_06680 PF01475 Ferric uptake regulator family AL474_06685 PF04355 SmpA / OmlA family AL474_06690 PF05173 Dihydrodipicolinate reductase, C-terminus AL474_06690 PF01113 Dihydrodipicolinate reductase, N-terminus AL474_06695 PF01565 FAD binding domain AL474_06695 PF02873 UDP-N-acetylenolpyruvoylglucosamine reductase, C-terminal domain AL474_06705 PF00561 alpha/beta hydrolase fold AL474_06715 PF03401 Tripartite tricarboxylate transporter family receptor AL474_06720 PF00551 Formyl transferase AL474_06730 PF01571 Aminomethyltransferase folate-binding domain AL474_06730 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL474_06730 PF17806 Sarcosine oxidase A3 domain AL474_06730 PF08669 Glycine cleavage T-protein C-terminal barrel domain AL474_06735 PF04267 Sarcosine oxidase, delta subunit family AL474_06740 PF01266 FAD dependent oxidoreductase AL474_06750 PF03466 LysR substrate binding domain AL474_06750 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_06755 PF02615 Malate/L-lactate dehydrogenase AL474_06760 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AL474_06760 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AL474_06765 PF03401 Tripartite tricarboxylate transporter family receptor AL474_06785 PF13629 Pilus formation protein N terminal region AL474_06785 PF04972 BON domain AL474_06785 PF00263 Bacterial type II and III secretion system protein AL474_06820 PF01557 Fumarylacetoacetate (FAA) hydrolase family AL474_06825 PF00719 Inorganic pyrophosphatase AL474_06845 PF03900 Porphobilinogen deaminase, C-terminal domain AL474_06845 PF01379 Porphobilinogen deaminase, dipyromethane cofactor binding domain AL474_06850 PF03741 Integral membrane protein TerC family AL474_06855 PF03741 Integral membrane protein TerC family AL474_06860 PF00549 CoA-ligase AL474_06860 PF02629 CoA binding domain AL474_06865 PF08442 ATP-grasp domain AL474_06865 PF00549 CoA-ligase AL474_06875 PF01717 Cobalamin-independent synthase, Catalytic domain AL474_06875 PF08267 Cobalamin-independent synthase, N-terminal domain AL474_06880 PF03466 LysR substrate binding domain AL474_06880 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_06885 PF02631 RecX family AL474_06890 PF00154 recA bacterial DNA recombination protein AL474_06895 PF00072 Response regulator receiver domain AL474_06895 PF00486 Transcriptional regulatory protein, C terminal AL474_06900 PF00512 His Kinase A (phospho-acceptor) domain AL474_06900 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL474_06900 PF08521 Two-component sensor kinase N-terminal AL474_06905 PF08946 Osmosensory transporter coiled coil AL474_06905 PF00083 Sugar (and other) transporter AL474_06910 PF00378 Enoyl-CoA hydratase/isomerase AL474_06910 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AL474_06910 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AL474_06915 PF00005 ABC transporter AL474_06915 PF08402 TOBE domain AL474_06920 PF00528 Binding-protein-dependent transport system inner membrane component AL474_06930 PF00106 short chain dehydrogenase AL474_06950 PF03466 LysR substrate binding domain AL474_06950 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_06955 PF02515 CoA-transferase family III AL474_06965 PF04381 Putative exonuclease, RdgC AL474_06970 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AL474_06970 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AL474_06990 PF04231 Endonuclease I AL474_07035 PF00216 Bacterial DNA-binding protein AL474_07040 PF01588 Putative tRNA binding domain AL474_07040 PF03483 B3/4 domain AL474_07040 PF17759 Phenylalanyl tRNA synthetase beta chain CLM domain AL474_07040 PF03484 tRNA synthetase B5 domain AL474_07040 PF03147 Ferredoxin-fold anticodon binding domain AL474_07045 PF01409 tRNA synthetases class II core domain (F) AL474_07045 PF02912 Aminoacyl tRNA synthetase class II, N-terminal domain AL474_07050 PF00453 Ribosomal protein L20 AL474_07055 PF01632 Ribosomal protein L35 AL474_07065 PF00692 dUTPase AL474_07075 PF00392 Bacterial regulatory proteins, gntR family AL474_07075 PF00155 Aminotransferase class I and II AL474_07090 PF13847 Methyltransferase domain AL474_07105 PF09335 SNARE associated Golgi protein AL474_07135 PF00356 Bacterial regulatory proteins, lacI family AL474_07140 PF00005 ABC transporter AL474_07140 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL474_07150 PF00528 Binding-protein-dependent transport system inner membrane component AL474_07155 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL474_07160 PF01546 Peptidase family M20/M25/M40 AL474_07160 PF07687 Peptidase dimerisation domain AL474_07175 PF01810 LysE type translocator AL474_07190 PF07690 Major Facilitator Superfamily AL474_07195 PF08240 Alcohol dehydrogenase GroES-like domain AL474_07195 PF00107 Zinc-binding dehydrogenase AL474_07210 PF03466 LysR substrate binding domain AL474_07210 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_07215 PF01965 DJ-1/PfpI family AL474_07215 PF12833 Helix-turn-helix domain AL474_07220 PF12706 Beta-lactamase superfamily domain AL474_07235 PF00753 Metallo-beta-lactamase superfamily AL474_07235 PF07521 Zn-dependent metallo-hydrolase RNA specificity domain AL474_07235 PF10996 Beta-Casp domain AL474_07240 PF01740 STAS domain AL474_07240 PF00916 Sulfate permease family AL474_07270 PF00528 Binding-protein-dependent transport system inner membrane component AL474_07275 PF00005 ABC transporter AL474_07285 PF01979 Amidohydrolase family AL474_07300 PF07690 Major Facilitator Superfamily AL474_07310 PF07804 HipA-like C-terminal domain AL474_07310 PF13657 HipA N-terminal domain AL474_07320 PF02540 NAD synthase AL474_07320 PF00958 GMP synthase C terminal domain AL474_07320 PF00117 Glutamine amidotransferase class-I AL474_07325 PF00478 IMP dehydrogenase / GMP reductase domain AL474_07325 PF00571 CBS domain AL474_07370 PF12320 Type 5 capsule protein repressor C-terminal domain AL474_07370 PF00149 Calcineurin-like phosphoesterase AL474_07375 PF01266 FAD dependent oxidoreductase AL474_07380 PF01037 Lrp/AsnC ligand binding domain AL474_07405 PF00528 Binding-protein-dependent transport system inner membrane component AL474_07425 PF08220 DeoR-like helix-turn-helix domain AL474_07425 PF00455 DeoR C terminal sensor domain AL474_07430 PF01266 FAD dependent oxidoreductase AL474_07430 PF16901 C-terminal domain of alpha-glycerophosphate oxidase AL474_07450 PF03401 Tripartite tricarboxylate transporter family receptor AL474_07455 PF00890 FAD binding domain AL474_07455 PF14537 Cytochrome c3 AL474_07480 PF03401 Tripartite tricarboxylate transporter family receptor AL474_07485 PF00701 Dihydrodipicolinate synthetase family AL474_07505 PF00472 RF-1 domain AL474_07515 PF01242 6-pyruvoyl tetrahydropterin synthase AL474_07520 PF03480 Bacterial extracellular solute-binding protein, family 7 AL474_07525 PF00596 Class II Aldolase and Adducin N-terminal domain AL474_07555 PF18072 Formylglycinamide ribonucleotide amidotransferase linker domain AL474_07555 PF18076 Formylglycinamide ribonucleotide amidotransferase N-terminal AL474_07555 PF02769 AIR synthase related protein, C-terminal domain AL474_07560 PF04290 Tripartite ATP-independent periplasmic transporters, DctQ component AL474_07565 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL474_07570 PF03480 Bacterial extracellular solute-binding protein, family 7 AL474_07585 PF16970 Type-1 fimbrial protein, A AL474_07595 PF03061 Thioesterase superfamily AL474_07600 PF00378 Enoyl-CoA hydratase/isomerase AL474_07605 PF00171 Aldehyde dehydrogenase family AL474_07620 PF01883 Iron-sulfur cluster assembly protein AL474_07625 PF05138 Phenylacetic acid catabolic protein AL474_07630 PF06243 Phenylacetic acid degradation B AL474_07635 PF05138 Phenylacetic acid catabolic protein AL474_07640 PF08223 PaaX-like protein C-terminal domain AL474_07640 PF07848 PaaX-like protein AL474_07645 PF03853 YjeF-related protein N-terminus AL474_07650 PF00929 Exonuclease AL474_07655 PF01435 Peptidase family M48 AL474_07660 PF03193 RsgA GTPase AL474_07670 PF00528 Binding-protein-dependent transport system inner membrane component AL474_07675 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL474_07685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_07685 PF03466 LysR substrate binding domain AL474_07710 PF00543 Nitrogen regulatory protein P-II AL474_07715 PF02540 NAD synthase AL474_07715 PF00795 Carbon-nitrogen hydrolase AL474_07720 PF00924 Mechanosensitive ion channel AL474_07725 PF14698 Argininosuccinate lyase C-terminal AL474_07725 PF00206 Lyase AL474_07745 PF06463 Molybdenum Cofactor Synthesis C AL474_07745 PF04055 Radical SAM superfamily AL474_07750 PF03454 MoeA C-terminal region (domain IV) AL474_07750 PF00994 Probable molybdopterin binding domain AL474_07750 PF03453 MoeA N-terminal region (domain I and II) AL474_07755 PF00994 Probable molybdopterin binding domain AL474_07760 PF02391 MoaE protein AL474_07770 PF01967 MoaC family AL474_07780 PF01738 Dienelactone hydrolase family AL474_07790 PF08534 Redoxin AL474_07805 PF04055 Radical SAM superfamily AL474_07805 PF06968 Biotin and Thiamin Synthesis associated domain AL474_07825 PF00403 Heavy-metal-associated domain AL474_07830 PF13411 MerR HTH family regulatory protein AL474_07855 PF02104 SURF1 family AL474_07860 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AL474_07865 PF00510 Cytochrome c oxidase subunit III AL474_07870 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL474_07880 PF07690 Major Facilitator Superfamily AL474_07880 PF00083 Sugar (and other) transporter AL474_07895 PF04380 Membrane fusogenic activity AL474_07900 PF00543 Nitrogen regulatory protein P-II AL474_07920 PF00440 Bacterial regulatory proteins, tetR family AL474_07925 PF07690 Major Facilitator Superfamily AL474_07930 PF00005 ABC transporter AL474_07935 PF00005 ABC transporter AL474_07935 PF12399 Branched-chain amino acid ATP-binding cassette transporter AL474_07940 PF11862 Domain of unknown function (DUF3382) AL474_07940 PF02653 Branched-chain amino acid transport system / permease component AL474_07945 PF02653 Branched-chain amino acid transport system / permease component AL474_07950 PF13458 Periplasmic binding protein AL474_07960 PF01619 Proline dehydrogenase AL474_07960 PF00171 Aldehyde dehydrogenase family AL474_07960 PF14850 DNA-binding domain of Proline dehydrogenase AL474_07960 PF18327 Proline utilization A proline dehydrogenase N-terminal domain AL474_07970 PF02470 MlaD protein AL474_07975 PF04403 Paraquat-inducible protein A AL474_07980 PF10431 C-terminal, D2-small domain, of ClpB protein AL474_07980 PF02861 Clp amino terminal domain, pathogenicity island component AL474_07980 PF00004 ATPase family associated with various cellular activities (AAA) AL474_07980 PF07724 AAA domain (Cdc48 subfamily) AL474_07980 PF17871 AAA lid domain AL474_07990 PF00207 Alpha-2-macroglobulin family AL474_07990 PF07703 Alpha-2-macroglobulin bait region domain AL474_07990 PF17970 Bacterial Alpha-2-macroglobulin MG1 domain AL474_07990 PF11974 Bacterial alpha-2-macroglobulin MG3 domain AL474_07990 PF17972 Bacterial Alpha-2-macroglobulin MG5 domain AL474_07990 PF17962 Bacterial macroglobulin domain 6 AL474_07990 PF01835 MG2 domain AL474_07990 PF17973 Bacterial Alpha-2-macroglobulin MG10 domain AL474_07995 PF02617 ATP-dependent Clp protease adaptor protein ClpS AL474_08000 PF00313 'Cold-shock' DNA-binding domain AL474_08010 PF00108 Thiolase, N-terminal domain AL474_08010 PF02803 Thiolase, C-terminal domain AL474_08015 PF00654 Voltage gated chloride channel AL474_08020 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AL474_08020 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AL474_08035 PF01618 MotA/TolQ/ExbB proton channel family AL474_08040 PF02472 Biopolymer transport protein ExbD/TolR AL474_08050 PF03966 Trm112p-like protein AL474_08055 PF02348 Cytidylyltransferase AL474_08060 PF05191 Adenylate kinase, active site lid AL474_08065 PF00106 short chain dehydrogenase AL474_08080 PF01649 Ribosomal protein S20 AL474_08085 PF03328 HpcH/HpaI aldolase/citrate lyase family AL474_08110 PF02615 Malate/L-lactate dehydrogenase AL474_08125 PF14821 Threonine synthase N terminus AL474_08125 PF00291 Pyridoxal-phosphate dependent enzyme AL474_08130 PF03447 Homoserine dehydrogenase, NAD binding domain AL474_08130 PF01842 ACT domain AL474_08130 PF00742 Homoserine dehydrogenase AL474_08135 PF00155 Aminotransferase class I and II AL474_08140 PF04430 Protein of unknown function (DUF498/DUF598) AL474_08145 PF00578 AhpC/TSA family AL474_08155 PF04166 Pyridoxal phosphate biosynthetic protein PdxA AL474_08160 PF13593 SBF-like CPA transporter family (DUF4137) AL474_08165 PF03796 DnaB-like helicase C terminal domain AL474_08165 PF00772 DnaB-like helicase N terminal domain AL474_08175 PF03948 Ribosomal protein L9, C-terminal domain AL474_08175 PF01281 Ribosomal protein L9, N-terminal domain AL474_08180 PF01084 Ribosomal protein S18 AL474_08190 PF01250 Ribosomal protein S6 AL474_08195 PF02649 Type I GTP cyclohydrolase folE2 AL474_08200 PF02779 Transketolase, pyrimidine binding domain AL474_08200 PF02780 Transketolase, C-terminal domain AL474_08200 PF13292 1-deoxy-D-xylulose-5-phosphate synthase AL474_08205 PF00348 Polyprenyl synthetase AL474_08210 PF02609 Exonuclease VII small subunit AL474_08220 PF03401 Tripartite tricarboxylate transporter family receptor AL474_08245 PF01769 Divalent cation transporter AL474_08245 PF00571 CBS domain AL474_08245 PF03448 MgtE intracellular N domain AL474_08250 PF03061 Thioesterase superfamily AL474_08255 PF03601 Conserved hypothetical protein 698 AL474_08260 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_08260 PF03466 LysR substrate binding domain AL474_08265 PF01546 Peptidase family M20/M25/M40 AL474_08265 PF07687 Peptidase dimerisation domain AL474_08270 PF13193 AMP-binding enzyme C-terminal domain AL474_08270 PF00501 AMP-binding enzyme AL474_08280 PF00459 Inositol monophosphatase family AL474_08290 PF13802 Galactose mutarotase-like AL474_08290 PF01055 Glycosyl hydrolases family 31 AL474_08295 PF09383 NIL domain AL474_08295 PF00005 ABC transporter AL474_08300 PF00528 Binding-protein-dependent transport system inner membrane component AL474_08305 PF03180 NLPA lipoprotein AL474_08320 PF00465 Iron-containing alcohol dehydrogenase AL474_08345 PF07729 FCD domain AL474_08345 PF00392 Bacterial regulatory proteins, gntR family AL474_08350 PF03401 Tripartite tricarboxylate transporter family receptor AL474_08370 PF00528 Binding-protein-dependent transport system inner membrane component AL474_08370 PF14785 Maltose transport system permease protein MalF P2 domain AL474_08375 PF00528 Binding-protein-dependent transport system inner membrane component AL474_08380 PF08402 TOBE domain AL474_08380 PF00005 ABC transporter AL474_08395 PF01547 Bacterial extracellular solute-binding protein AL474_08410 PF00376 MerR family regulatory protein AL474_08410 PF09278 MerR, DNA binding AL474_08415 PF03352 Methyladenine glycosylase AL474_08420 PF05170 AsmA family AL474_08430 PF00440 Bacterial regulatory proteins, tetR family AL474_08475 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_08475 PF03466 LysR substrate binding domain AL474_08480 PF02548 Ketopantoate hydroxymethyltransferase AL474_08485 PF13609 Gram-negative porin AL474_08505 PF00083 Sugar (and other) transporter AL474_08515 PF03466 LysR substrate binding domain AL474_08515 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_08520 PF00155 Aminotransferase class I and II AL474_08525 PF01966 HD domain AL474_08550 PF00107 Zinc-binding dehydrogenase AL474_08550 PF08240 Alcohol dehydrogenase GroES-like domain AL474_08565 PF00005 ABC transporter AL474_08570 PF00528 Binding-protein-dependent transport system inner membrane component AL474_08580 PF00501 AMP-binding enzyme AL474_08580 PF13193 AMP-binding enzyme C-terminal domain AL474_08590 PF13404 AsnC-type helix-turn-helix domain AL474_08590 PF01037 Lrp/AsnC ligand binding domain AL474_08595 PF03401 Tripartite tricarboxylate transporter family receptor AL474_08600 PF00677 Lumazine binding domain AL474_08605 PF01425 Amidase AL474_08620 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_08620 PF03466 LysR substrate binding domain AL474_08625 PF07690 Major Facilitator Superfamily AL474_08630 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL474_08640 PF03466 LysR substrate binding domain AL474_08640 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_08660 PF00005 ABC transporter AL474_08675 PF02653 Branched-chain amino acid transport system / permease component AL474_08680 PF01042 Endoribonuclease L-PSP AL474_08685 PF00501 AMP-binding enzyme AL474_08685 PF13193 AMP-binding enzyme C-terminal domain AL474_08695 PF09339 IclR helix-turn-helix domain AL474_08695 PF01614 Bacterial transcriptional regulator AL474_08710 PF00005 ABC transporter AL474_08715 PF00528 Binding-protein-dependent transport system inner membrane component AL474_08735 PF02515 CoA-transferase family III AL474_08740 PF01425 Amidase AL474_08750 PF00392 Bacterial regulatory proteins, gntR family AL474_08750 PF07729 FCD domain AL474_08760 PF01594 AI-2E family transporter AL474_08780 PF01322 Cytochrome C' AL474_08785 PF08328 Adenylosuccinate lyase C-terminal AL474_08785 PF00206 Lyase AL474_08790 PF13417 Glutathione S-transferase, N-terminal domain AL474_08790 PF00043 Glutathione S-transferase, C-terminal domain AL474_08795 PF01925 Sulfite exporter TauE/SafE AL474_08805 PF03466 LysR substrate binding domain AL474_08805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_08810 PF03401 Tripartite tricarboxylate transporter family receptor AL474_08820 PF01262 Alanine dehydrogenase/PNT, C-terminal domain AL474_08820 PF05222 Alanine dehydrogenase/PNT, N-terminal domain AL474_08825 PF02233 NAD(P) transhydrogenase beta subunit AL474_08835 PF07715 TonB-dependent Receptor Plug Domain AL474_08835 PF00593 TonB dependent receptor AL474_08840 PF00756 Putative esterase AL474_08845 PF02754 Cysteine-rich domain AL474_08845 PF13183 4Fe-4S dicluster domain AL474_08850 PF01565 FAD binding domain AL474_08855 PF01565 FAD binding domain AL474_08855 PF02913 FAD linked oxidases, C-terminal domain AL474_08860 PF01565 FAD binding domain AL474_08860 PF02913 FAD linked oxidases, C-terminal domain AL474_08865 PF13018 Extended Signal Peptide of Type V secretion system AL474_08865 PF05860 haemagglutination activity domain AL474_08865 PF05860 haemagglutination activity domain AL474_08865 PF13018 Extended Signal Peptide of Type V secretion system AL474_08865 PF05594 Haemagluttinin repeat AL474_08865 PF13332 Hemagglutinin repeat AL474_08865 PF13332 Hemagglutinin repeat AL474_08865 PF05594 Haemagluttinin repeat AL474_08870 PF00793 DAHP synthetase I family AL474_08875 PF01523 Putative modulator of DNA gyrase AL474_08880 PF00795 Carbon-nitrogen hydrolase AL474_08900 PF04542 Sigma-70 region 2 AL474_08900 PF08281 Sigma-70, region 4 AL474_08910 PF04461 Protein of unknown function (DUF520) AL474_08925 PF01476 LysM domain AL474_08925 PF01551 Peptidase family M23 AL474_08940 PF07715 TonB-dependent Receptor Plug Domain AL474_08940 PF00593 TonB dependent receptor AL474_08955 PF05114 Protein of unknown function (DUF692) AL474_08975 PF01022 Bacterial regulatory protein, arsR family AL474_08980 PF03626 Prokaryotic Cytochrome C oxidase subunit IV AL474_08985 PF00510 Cytochrome c oxidase subunit III AL474_08990 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL474_08995 PF06481 COX Aromatic Rich Motif AL474_08995 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AL474_09000 PF00072 Response regulator receiver domain AL474_09015 PF02678 Pirin AL474_09015 PF05726 Pirin C-terminal cupin domain AL474_09035 PF02515 CoA-transferase family III AL474_09040 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_09040 PF03466 LysR substrate binding domain AL474_09045 PF03401 Tripartite tricarboxylate transporter family receptor AL474_09055 PF02770 Acyl-CoA dehydrogenase, middle domain AL474_09055 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL474_09055 PF02770 Acyl-CoA dehydrogenase, middle domain AL474_09055 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL474_09055 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL474_09055 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL474_09070 PF00383 Cytidine and deoxycytidylate deaminase zinc-binding region AL474_09070 PF01872 RibD C-terminal domain AL474_09085 PF03477 ATP cone domain AL474_09090 PF00464 Serine hydroxymethyltransferase AL474_09100 PF00579 tRNA synthetases class I (W and Y) AL474_09100 PF01479 S4 domain AL474_09110 PF01551 Peptidase family M23 AL474_09110 PF08460 Bacterial SH3 domain AL474_09115 PF03702 Anhydro-N-acetylmuramic acid kinase AL474_09120 PF01521 Iron-sulphur cluster biosynthesis AL474_09130 PF02774 Semialdehyde dehydrogenase, dimerisation domain AL474_09130 PF01118 Semialdehyde dehydrogenase, NAD binding domain AL474_09135 PF00380 Ribosomal protein S9/S16 AL474_09140 PF00572 Ribosomal protein L13 AL474_09145 PF03480 Bacterial extracellular solute-binding protein, family 7 AL474_09150 PF01523 Putative modulator of DNA gyrase AL474_09155 PF04751 Protein of unknown function (DUF615) AL474_09160 PF02230 Phospholipase/Carboxylesterase AL474_09170 PF00005 ABC transporter AL474_09175 PF00528 Binding-protein-dependent transport system inner membrane component AL474_09180 PF00857 Isochorismatase family AL474_09185 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL474_09190 PF00271 Helicase conserved C-terminal domain AL474_09190 PF03880 DbpA RNA binding domain AL474_09190 PF00270 DEAD/DEAH box helicase AL474_09200 PF07729 FCD domain AL474_09200 PF00392 Bacterial regulatory proteins, gntR family AL474_09210 PF00583 Acetyltransferase (GNAT) family AL474_09210 PF13380 CoA binding domain AL474_09210 PF13607 Succinyl-CoA ligase like flavodoxin domain AL474_09215 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL474_09230 PF01037 Lrp/AsnC ligand binding domain AL474_09245 PF00317 Ribonucleotide reductase, all-alpha domain AL474_09245 PF02867 Ribonucleotide reductase, barrel domain AL474_09245 PF03477 ATP cone domain AL474_09250 PF00268 Ribonucleotide reductase, small chain AL474_09265 PF00501 AMP-binding enzyme AL474_09265 PF13193 AMP-binding enzyme C-terminal domain AL474_09270 PF03062 MBOAT, membrane-bound O-acyltransferase family AL474_09295 PF00294 pfkB family carbohydrate kinase AL474_09310 PF02785 Biotin carboxylase C-terminal domain AL474_09310 PF00289 Biotin carboxylase, N-terminal domain AL474_09310 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL474_09315 PF00364 Biotin-requiring enzyme AL474_09320 PF01220 Dehydroquinase class II AL474_09325 PF08534 Redoxin AL474_09330 PF02875 Mur ligase family, glutamate ligase domain AL474_09330 PF01225 Mur ligase family, catalytic domain AL474_09330 PF08245 Mur ligase middle domain AL474_09335 PF05728 Uncharacterised protein family (UPF0227) AL474_09340 PF00773 RNB domain AL474_09350 PF18317 Shikimate 5'-dehydrogenase C-terminal domain AL474_09350 PF01488 Shikimate / quinate 5-dehydrogenase AL474_09350 PF08501 Shikimate dehydrogenase substrate binding domain AL474_09360 PF07017 Antimicrobial peptide resistance and lipid A acylation protein PagP AL474_09370 PF01037 Lrp/AsnC ligand binding domain AL474_09375 PF01266 FAD dependent oxidoreductase AL474_09380 PF00106 short chain dehydrogenase AL474_09390 PF03401 Tripartite tricarboxylate transporter family receptor AL474_09400 PF01043 SecA preprotein cross-linking domain AL474_09400 PF07517 SecA DEAD-like domain AL474_09400 PF07516 SecA Wing and Scaffold domain AL474_09400 PF02810 SEC-C motif AL474_09405 PF01551 Peptidase family M23 AL474_09405 PF01476 LysM domain AL474_09405 PF08525 Opacity-associated protein A N-terminal motif AL474_09415 PF03331 UDP-3-O-acyl N-acetylglycosamine deacetylase AL474_09420 PF00091 Tubulin/FtsZ family, GTPase domain AL474_09420 PF12327 FtsZ family, C-terminal domain AL474_09425 PF02491 SHS2 domain inserted in FTSA AL474_09430 PF03799 Cell division protein FtsQ AL474_09430 PF08478 POTRA domain, FtsQ-type AL474_09435 PF07478 D-ala D-ala ligase C-terminus AL474_09435 PF01820 D-ala D-ala ligase N-terminus AL474_09440 PF08245 Mur ligase middle domain AL474_09440 PF02875 Mur ligase family, glutamate ligase domain AL474_09440 PF01225 Mur ligase family, catalytic domain AL474_09445 PF03033 Glycosyltransferase family 28 N-terminal domain AL474_09445 PF04101 Glycosyltransferase family 28 C-terminal domain AL474_09450 PF01098 Cell cycle protein AL474_09455 PF08245 Mur ligase middle domain AL474_09455 PF02875 Mur ligase family, glutamate ligase domain AL474_09460 PF00953 Glycosyl transferase family 4 AL474_09465 PF02875 Mur ligase family, glutamate ligase domain AL474_09465 PF08245 Mur ligase middle domain AL474_09470 PF00905 Penicillin binding protein transpeptidase domain AL474_09470 PF03717 Penicillin-binding Protein dimerisation domain AL474_09475 PF04999 Cell division protein FtsL AL474_09480 PF01795 MraW methylase family AL474_09485 PF02381 MraZ protein, putative antitoxin-like AL474_09500 PF01979 Amidohydrolase family AL474_09505 PF07687 Peptidase dimerisation domain AL474_09505 PF01546 Peptidase family M20/M25/M40 AL474_09545 PF01037 Lrp/AsnC ligand binding domain AL474_09550 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL474_09555 PF01625 Peptide methionine sulfoxide reductase AL474_09560 PF00034 Cytochrome c AL474_09565 PF00920 Dehydratase family AL474_09570 PF01790 Prolipoprotein diacylglyceryl transferase AL474_09610 PF01970 Tripartite tricarboxylate transporter TctA family AL474_09620 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL474_09620 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL474_09640 PF01923 Cobalamin adenosyltransferase AL474_09650 PF10431 C-terminal, D2-small domain, of ClpB protein AL474_09650 PF07724 AAA domain (Cdc48 subfamily) AL474_09650 PF00004 ATPase family associated with various cellular activities (AAA) AL474_09655 PF00227 Proteasome subunit AL474_09660 PF01258 Prokaryotic dksA/traR C4-type zinc finger AL474_09665 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL474_09665 PF07683 Cobalamin synthesis protein cobW C-terminal domain AL474_09670 PF01475 Ferric uptake regulator family AL474_09680 PF00005 ABC transporter AL474_09685 PF00950 ABC 3 transport family AL474_09690 PF01297 Zinc-uptake complex component A periplasmic AL474_09700 PF03824 High-affinity nickel-transport protein AL474_09705 PF00593 TonB dependent receptor AL474_09705 PF07715 TonB-dependent Receptor Plug Domain AL474_09720 PF01678 Diaminopimelate epimerase AL474_09725 PF03279 Bacterial lipid A biosynthesis acyltransferase AL474_09735 PF02773 S-adenosylmethionine synthetase, C-terminal domain AL474_09735 PF02772 S-adenosylmethionine synthetase, central domain AL474_09735 PF00438 S-adenosylmethionine synthetase, N-terminal domain AL474_09745 PF00534 Glycosyl transferases group 1 AL474_09745 PF13439 Glycosyltransferase Family 4 AL474_09750 PF00670 S-adenosyl-L-homocysteine hydrolase, NAD binding domain AL474_09750 PF05221 S-adenosyl-L-homocysteine hydrolase AL474_09755 PF04020 Mycobacterial 4 TMS phage holin, superfamily IV AL474_09760 PF02219 Methylenetetrahydrofolate reductase AL474_09770 PF03466 LysR substrate binding domain AL474_09770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_09775 PF00850 Histone deacetylase domain AL474_09780 PF07690 Major Facilitator Superfamily AL474_09780 PF00083 Sugar (and other) transporter AL474_09790 PF14718 Soluble lytic murein transglycosylase L domain AL474_09790 PF01464 Transglycosylase SLT domain AL474_09805 PF00270 DEAD/DEAH box helicase AL474_09805 PF00271 Helicase conserved C-terminal domain AL474_09810 PF03167 Uracil DNA glycosylase superfamily AL474_09820 PF13091 PLD-like domain AL474_09825 PF03459 TOBE domain AL474_09825 PF00005 ABC transporter AL474_09830 PF00528 Binding-protein-dependent transport system inner membrane component AL474_09840 PF00561 alpha/beta hydrolase fold AL474_09895 PF03401 Tripartite tricarboxylate transporter family receptor AL474_09910 PF01266 FAD dependent oxidoreductase AL474_09935 PF00440 Bacterial regulatory proteins, tetR family AL474_09935 PF17938 Tetracyclin repressor-like, C-terminal domain AL474_09950 PF00486 Transcriptional regulatory protein, C terminal AL474_09950 PF00072 Response regulator receiver domain AL474_09960 PF12951 Passenger-associated-transport-repeat AL474_09995 PF13175 AAA ATPase domain AL474_10000 PF01555 DNA methylase AL474_10015 PF13356 Arm DNA-binding domain AL474_10015 PF00589 Phage integrase family AL474_10020 PF01926 50S ribosome-binding GTPase AL474_10020 PF06071 Protein of unknown function (DUF933) AL474_10030 PF01195 Peptidyl-tRNA hydrolase AL474_10035 PF14693 Ribosomal protein TL5, C-terminal domain AL474_10035 PF01386 Ribosomal L25p family AL474_10040 PF14572 Phosphoribosyl synthetase-associated domain AL474_10040 PF13793 N-terminal domain of ribose phosphate pyrophosphokinase AL474_10050 PF00288 GHMP kinases N terminal domain AL474_10050 PF08544 GHMP kinases C terminal AL474_10055 PF03550 Outer membrane lipoprotein LolB AL474_10065 PF06827 Zinc finger found in FPG and IleRS AL474_10065 PF06831 Formamidopyrimidine-DNA glycosylase H2TH domain AL474_10065 PF01149 Formamidopyrimidine-DNA glycosylase N-terminal domain AL474_10075 PF01494 FAD binding domain AL474_10085 PF03466 LysR substrate binding domain AL474_10085 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_10090 PF04209 homogentisate 1,2-dioxygenase AL474_10100 PF00884 Sulfatase AL474_10105 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL474_10105 PF00512 His Kinase A (phospho-acceptor) domain AL474_10105 PF08521 Two-component sensor kinase N-terminal AL474_10110 PF00486 Transcriptional regulatory protein, C terminal AL474_10110 PF00072 Response regulator receiver domain AL474_10115 PF01565 FAD binding domain AL474_10115 PF02913 FAD linked oxidases, C-terminal domain AL474_10125 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL474_10125 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL474_10125 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL474_10125 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL474_10130 PF00342 Phosphoglucose isomerase AL474_10135 PF13477 Glycosyl transferase 4-like AL474_10135 PF00534 Glycosyl transferases group 1 AL474_10145 PF13439 Glycosyltransferase Family 4 AL474_10145 PF00534 Glycosyl transferases group 1 AL474_10150 PF00733 Asparagine synthase AL474_10150 PF13537 Glutamine amidotransferase domain AL474_10155 PF13439 Glycosyltransferase Family 4 AL474_10155 PF00534 Glycosyl transferases group 1 AL474_10165 PF01370 NAD dependent epimerase/dehydratase family AL474_10170 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AL474_10170 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AL474_10170 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AL474_10175 PF00953 Glycosyl transferase family 4 AL474_10180 PF03232 Ubiquinone biosynthesis protein COQ7 AL474_10190 PF00303 Thymidylate synthase AL474_10195 PF00186 Dihydrofolate reductase AL474_10200 PF00155 Aminotransferase class I and II AL474_10200 PF00392 Bacterial regulatory proteins, gntR family AL474_10205 PF00202 Aminotransferase class-III AL474_10215 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL474_10220 PF00528 Binding-protein-dependent transport system inner membrane component AL474_10225 PF00528 Binding-protein-dependent transport system inner membrane component AL474_10235 PF07171 MlrC C-terminus AL474_10235 PF07364 Metallopeptidase family M81 AL474_10245 PF02492 CobW/HypB/UreG, nucleotide-binding domain AL474_10250 PF01730 UreF AL474_10255 PF02814 UreE urease accessory protein, N-terminal domain AL474_10255 PF05194 UreE urease accessory protein, C-terminal domain AL474_10260 PF01979 Amidohydrolase family AL474_10260 PF00449 Urease alpha-subunit, N-terminal domain AL474_10265 PF00699 Urease beta subunit AL474_10270 PF04955 HupE / UreJ protein AL474_10275 PF00547 Urease, gamma subunit AL474_10280 PF01774 UreD urease accessory protein AL474_10285 PF09278 MerR, DNA binding AL474_10285 PF00376 MerR family regulatory protein AL474_10305 PF00392 Bacterial regulatory proteins, gntR family AL474_10305 PF07702 UTRA domain AL474_10310 PF05034 Methylaspartate ammonia-lyase N-terminus AL474_10310 PF07476 Methylaspartate ammonia-lyase C-terminus AL474_10315 PF03401 Tripartite tricarboxylate transporter family receptor AL474_10330 PF04293 SpoVR like protein AL474_10335 PF04285 Protein of unknown function (DUF444) AL474_10355 PF02515 CoA-transferase family III AL474_10360 PF14535 AMP-binding enzyme C-terminal domain AL474_10360 PF00501 AMP-binding enzyme AL474_10365 PF00440 Bacterial regulatory proteins, tetR family AL474_10365 PF08361 MAATS-type transcriptional repressor, C-terminal region AL474_10370 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL474_10370 PF02770 Acyl-CoA dehydrogenase, middle domain AL474_10370 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL474_10380 PF02653 Branched-chain amino acid transport system / permease component AL474_10385 PF00005 ABC transporter AL474_10390 PF00005 ABC transporter AL474_10390 PF12399 Branched-chain amino acid ATP-binding cassette transporter AL474_10400 PF00106 short chain dehydrogenase AL474_10405 PF00378 Enoyl-CoA hydratase/isomerase AL474_10465 PF00075 RNase H AL474_10470 PF08241 Methyltransferase domain AL474_10480 PF01476 LysM domain AL474_10480 PF01464 Transglycosylase SLT domain AL474_10500 PF04391 Protein of unknown function (DUF533) AL474_10505 PF03401 Tripartite tricarboxylate transporter family receptor AL474_10520 PF00072 Response regulator receiver domain AL474_10520 PF00486 Transcriptional regulatory protein, C terminal AL474_10535 PF01654 Cytochrome bd terminal oxidase subunit I AL474_10540 PF00749 tRNA synthetases class I (E and Q), catalytic domain AL474_10540 PF03950 tRNA synthetases class I (E and Q), anti-codon binding domain AL474_10545 PF03775 Septum formation inhibitor MinC, C-terminal domain AL474_10545 PF05209 Septum formation inhibitor MinC, N-terminal domain AL474_10550 PF01656 CobQ/CobB/MinD/ParA nucleotide binding domain AL474_10555 PF03776 Septum formation topological specificity factor MinE AL474_10585 PF00528 Binding-protein-dependent transport system inner membrane component AL474_10590 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL474_10595 PF00535 Glycosyl transferase family 2 AL474_10600 PF03466 LysR substrate binding domain AL474_10600 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_10610 PF17760 UvrA interaction domain AL474_10610 PF17755 UvrA DNA-binding domain AL474_10610 PF00005 ABC transporter AL474_10620 PF01063 Amino-transferase class IV AL474_10635 PF03401 Tripartite tricarboxylate transporter family receptor AL474_10640 PF00501 AMP-binding enzyme AL474_10640 PF13193 AMP-binding enzyme C-terminal domain AL474_10645 PF00392 Bacterial regulatory proteins, gntR family AL474_10645 PF07702 UTRA domain AL474_10650 PF00899 ThiF family AL474_10655 PF07690 Major Facilitator Superfamily AL474_10665 PF10590 Pyridoxine 5'-phosphate oxidase C-terminal dimerisation region AL474_10665 PF01243 Pyridoxamine 5'-phosphate oxidase AL474_10670 PF01613 Flavin reductase like domain AL474_10680 PF00551 Formyl transferase AL474_10685 PF03466 LysR substrate binding domain AL474_10685 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_10720 PF00218 Indole-3-glycerol phosphate synthase AL474_10725 PF02885 Glycosyl transferase family, helical bundle domain AL474_10725 PF00591 Glycosyl transferase family, a/b domain AL474_10730 PF00117 Glutamine amidotransferase class-I AL474_10735 PF00425 chorismate binding enzyme AL474_10735 PF04715 Anthranilate synthase component I, N terminal region AL474_10740 PF13419 Haloacid dehalogenase-like hydrolase AL474_10750 PF04379 ApaG domain AL474_10755 PF06725 3D domain AL474_10755 PF03562 MltA specific insert domain AL474_10760 PF01494 FAD binding domain AL474_10765 PF13098 Thioredoxin-like domain AL474_10765 PF10411 Disulfide bond isomerase protein N-terminus AL474_10770 PF01842 ACT domain AL474_10770 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL474_10770 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL474_10780 PF01171 PP-loop family AL474_10790 PF13192 Thioredoxin domain AL474_10790 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL474_10795 PF17820 PDZ domain AL474_10795 PF13180 PDZ domain AL474_10800 PF00378 Enoyl-CoA hydratase/isomerase AL474_10825 PF00119 ATP synthase A chain AL474_10830 PF00137 ATP synthase subunit C AL474_10835 PF00430 ATP synthase B/B' CF(0) AL474_10840 PF00213 ATP synthase delta (OSCP) subunit AL474_10845 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL474_10845 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL474_10845 PF00306 ATP synthase alpha/beta chain, C terminal domain AL474_10850 PF00231 ATP synthase AL474_10855 PF00006 ATP synthase alpha/beta family, nucleotide-binding domain AL474_10855 PF02874 ATP synthase alpha/beta family, beta-barrel domain AL474_10860 PF02823 ATP synthase, Delta/Epsilon chain, beta-sandwich domain AL474_10870 PF01208 Uroporphyrinogen decarboxylase (URO-D) AL474_10875 PF17764 3′ DNA-binding domain (3′BD) AL474_10875 PF18074 Primosomal protein N C-terminal domain AL474_10875 PF00270 DEAD/DEAH box helicase AL474_10875 PF18319 PriA DNA helicase Cys-rich region (CRR) domain AL474_10875 PF00271 Helicase conserved C-terminal domain AL474_10880 PF00580 UvrD/REP helicase N-terminal domain AL474_10880 PF13361 UvrD-like helicase C-terminal domain AL474_10890 PF01546 Peptidase family M20/M25/M40 AL474_10890 PF07687 Peptidase dimerisation domain AL474_10905 PF12911 N-terminal TM domain of oligopeptide transport permease C AL474_10905 PF00528 Binding-protein-dependent transport system inner membrane component AL474_10910 PF00528 Binding-protein-dependent transport system inner membrane component AL474_10930 PF01256 Carbohydrate kinase AL474_10935 PF00378 Enoyl-CoA hydratase/isomerase AL474_10940 PF00378 Enoyl-CoA hydratase/isomerase AL474_11000 PF07731 Multicopper oxidase AL474_11000 PF07732 Multicopper oxidase AL474_11000 PF00394 Multicopper oxidase AL474_11005 PF05275 Copper resistance protein B precursor (CopB) AL474_11010 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AL474_11010 PF00378 Enoyl-CoA hydratase/isomerase AL474_11010 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AL474_11025 PF01614 Bacterial transcriptional regulator AL474_11025 PF09339 IclR helix-turn-helix domain AL474_11030 PF05995 Cysteine dioxygenase type I AL474_11035 PF01425 Amidase AL474_11040 PF13458 Periplasmic binding protein AL474_11065 PF13091 PLD-like domain AL474_11070 PF03372 Endonuclease/Exonuclease/phosphatase family AL474_11075 PF02938 GAD domain AL474_11075 PF00152 tRNA synthetases class II (D, K and N) AL474_11075 PF01336 OB-fold nucleic acid binding domain AL474_11115 PF02222 ATP-grasp domain AL474_11115 PF01370 NAD dependent epimerase/dehydratase family AL474_11120 PF01380 SIS domain AL474_11120 PF00571 CBS domain AL474_11140 PF00005 ABC transporter AL474_11150 PF00359 Phosphoenolpyruvate-dependent sugar phosphotransferase system, EIIA 2 AL474_11155 PF02603 HPr Serine kinase N terminus AL474_11155 PF07475 HPr Serine kinase C-terminal domain AL474_11160 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AL474_11160 PF00034 Cytochrome c AL474_11160 PF13442 Cytochrome C oxidase, cbb3-type, subunit III AL474_11170 PF03668 P-loop ATPase protein family AL474_11175 PF05036 Sporulation related domain AL474_11175 PF03330 Lytic transglycolase AL474_11195 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AL474_11195 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AL474_11210 PF09084 NMT1/THI5 like AL474_11215 PF03401 Tripartite tricarboxylate transporter family receptor AL474_11220 PF02441 Flavoprotein AL474_11225 PF00462 Glutaredoxin AL474_11230 PF05175 Methyltransferase small domain AL474_11230 PF17827 PrmC N-terminal domain AL474_11235 PF03462 PCRF domain AL474_11235 PF00472 RF-1 domain AL474_11240 PF01488 Shikimate / quinate 5-dehydrogenase AL474_11240 PF05201 Glutamyl-tRNAGlu reductase, N-terminal domain AL474_11240 PF00745 Glutamyl-tRNAGlu reductase, dimerisation domain AL474_11260 PF01568 Molydopterin dinucleotide binding domain AL474_11260 PF00384 Molybdopterin oxidoreductase AL474_11275 PF13380 CoA binding domain AL474_11275 PF13607 Succinyl-CoA ligase like flavodoxin domain AL474_11275 PF00583 Acetyltransferase (GNAT) family AL474_11280 PF03401 Tripartite tricarboxylate transporter family receptor AL474_11285 PF12806 Acetyl-CoA dehydrogenase C-terminal like AL474_11285 PF02770 Acyl-CoA dehydrogenase, middle domain AL474_11285 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL474_11285 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL474_11290 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AL474_11290 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AL474_11290 PF00378 Enoyl-CoA hydratase/isomerase AL474_11295 PF00108 Thiolase, N-terminal domain AL474_11295 PF02803 Thiolase, C-terminal domain AL474_11300 PF01037 Lrp/AsnC ligand binding domain AL474_11305 PF01380 SIS domain AL474_11310 PF01073 3-beta hydroxysteroid dehydrogenase/isomerase family AL474_11315 PF03401 Tripartite tricarboxylate transporter family receptor AL474_11325 PF00378 Enoyl-CoA hydratase/isomerase AL474_11330 PF00583 Acetyltransferase (GNAT) family AL474_11330 PF13607 Succinyl-CoA ligase like flavodoxin domain AL474_11330 PF13380 CoA binding domain AL474_11335 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_11335 PF03466 LysR substrate binding domain AL474_11340 PF00107 Zinc-binding dehydrogenase AL474_11340 PF08240 Alcohol dehydrogenase GroES-like domain AL474_11350 PF01042 Endoribonuclease L-PSP AL474_11360 PF01546 Peptidase family M20/M25/M40 AL474_11360 PF07687 Peptidase dimerisation domain AL474_11365 PF03401 Tripartite tricarboxylate transporter family receptor AL474_11370 PF02770 Acyl-CoA dehydrogenase, middle domain AL474_11370 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL474_11370 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL474_11375 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL474_11375 PF02770 Acyl-CoA dehydrogenase, middle domain AL474_11375 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL474_11380 PF09330 D-lactate dehydrogenase, membrane binding AL474_11380 PF01565 FAD binding domain AL474_11385 PF03466 LysR substrate binding domain AL474_11385 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_11390 PF03401 Tripartite tricarboxylate transporter family receptor AL474_11410 PF00701 Dihydrodipicolinate synthetase family AL474_11415 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_11415 PF03466 LysR substrate binding domain AL474_11420 PF02515 CoA-transferase family III AL474_11425 PF03401 Tripartite tricarboxylate transporter family receptor AL474_11430 PF02770 Acyl-CoA dehydrogenase, middle domain AL474_11430 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL474_11430 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL474_11435 PF01575 MaoC like domain AL474_11450 PF08541 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III C terminal AL474_11450 PF08545 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III AL474_11455 PF00378 Enoyl-CoA hydratase/isomerase AL474_11460 PF02770 Acyl-CoA dehydrogenase, middle domain AL474_11460 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL474_11460 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL474_11465 PF03401 Tripartite tricarboxylate transporter family receptor AL474_11480 PF00676 Dehydrogenase E1 component AL474_11485 PF02780 Transketolase, C-terminal domain AL474_11485 PF02779 Transketolase, pyrimidine binding domain AL474_11490 PF00378 Enoyl-CoA hydratase/isomerase AL474_11495 PF00364 Biotin-requiring enzyme AL474_11495 PF02817 e3 binding domain AL474_11495 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL474_11500 PF02770 Acyl-CoA dehydrogenase, middle domain AL474_11500 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL474_11500 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL474_11505 PF13193 AMP-binding enzyme C-terminal domain AL474_11505 PF00501 AMP-binding enzyme AL474_11515 PF13458 Periplasmic binding protein AL474_11520 PF02653 Branched-chain amino acid transport system / permease component AL474_11525 PF12399 Branched-chain amino acid ATP-binding cassette transporter AL474_11525 PF00005 ABC transporter AL474_11530 PF00005 ABC transporter AL474_11535 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL474_11535 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL474_11550 PF03401 Tripartite tricarboxylate transporter family receptor AL474_11565 PF03401 Tripartite tricarboxylate transporter family receptor AL474_11575 PF00899 ThiF family AL474_11580 PF03572 Peptidase family S41 AL474_11580 PF13180 PDZ domain AL474_11585 PF01551 Peptidase family M23 AL474_11590 PF00300 Histidine phosphatase superfamily (branch 1) AL474_11600 PF00462 Glutaredoxin AL474_11605 PF02556 Preprotein translocase subunit SecB AL474_11610 PF07479 NAD-dependent glycerol-3-phosphate dehydrogenase C-terminus AL474_11610 PF01210 NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus AL474_11615 PF03401 Tripartite tricarboxylate transporter family receptor AL474_11620 PF00588 SpoU rRNA Methylase family AL474_11630 PF08241 Methyltransferase domain AL474_11635 PF04107 Glutamate-cysteine ligase family 2(GCS2) AL474_11650 PF00528 Binding-protein-dependent transport system inner membrane component AL474_11655 PF00005 ABC transporter AL474_11665 PF01799 [2Fe-2S] binding domain AL474_11665 PF00111 2Fe-2S iron-sulfur cluster binding domain AL474_11675 PF01315 Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain AL474_11675 PF02738 Molybdopterin-binding domain of aldehyde dehydrogenase AL474_11680 PF03480 Bacterial extracellular solute-binding protein, family 7 AL474_11685 PF00355 Rieske [2Fe-2S] domain AL474_11690 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL474_11690 PF14759 Reductase C-terminal AL474_11695 PF00848 Ring hydroxylating alpha subunit (catalytic domain) AL474_11695 PF00355 Rieske [2Fe-2S] domain AL474_11705 PF00857 Isochorismatase family AL474_11720 PF17645 Arylmalonate decarboxylase AL474_11740 PF01047 MarR family AL474_11745 PF02386 Cation transport protein AL474_11750 PF02254 TrkA-N domain AL474_11750 PF02080 TrkA-C domain AL474_11755 PF00072 Response regulator receiver domain AL474_11755 PF00158 Sigma-54 interaction domain AL474_11755 PF02954 Bacterial regulatory protein, Fis family AL474_11760 PF00989 PAS fold AL474_11760 PF00512 His Kinase A (phospho-acceptor) domain AL474_11760 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL474_11760 PF00672 HAMP domain AL474_11770 PF01029 NusB family AL474_11770 PF01189 16S rRNA methyltransferase RsmB/F AL474_11780 PF01958 Domain of unknown function DUF108 AL474_11780 PF03447 Homoserine dehydrogenase, NAD binding domain AL474_11805 PF03466 LysR substrate binding domain AL474_11805 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_11815 PF03401 Tripartite tricarboxylate transporter family receptor AL474_11825 PF00155 Aminotransferase class I and II AL474_11830 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL474_11840 PF00682 HMGL-like AL474_11850 PF01037 Lrp/AsnC ligand binding domain AL474_11855 PF00266 Aminotransferase class-V AL474_11860 PF01327 Polypeptide deformylase AL474_11870 PF02911 Formyl transferase, C-terminal domain AL474_11870 PF00551 Formyl transferase AL474_11880 PF13419 Haloacid dehalogenase-like hydrolase AL474_11890 PF03641 Possible lysine decarboxylase AL474_11900 PF00919 Uncharacterized protein family UPF0004 AL474_11900 PF18693 TRAM domain AL474_11900 PF04055 Radical SAM superfamily AL474_11905 PF01361 Tautomerase enzyme AL474_11910 PF01266 FAD dependent oxidoreductase AL474_11915 PF03401 Tripartite tricarboxylate transporter family receptor AL474_11920 PF00392 Bacterial regulatory proteins, gntR family AL474_11920 PF07729 FCD domain AL474_11930 PF00202 Aminotransferase class-III AL474_11935 PF00491 Arginase family AL474_11945 PF03401 Tripartite tricarboxylate transporter family receptor AL474_11950 PF02627 Carboxymuconolactone decarboxylase family AL474_11955 PF00378 Enoyl-CoA hydratase/isomerase AL474_11960 PF09339 IclR helix-turn-helix domain AL474_11960 PF01614 Bacterial transcriptional regulator AL474_11965 PF00501 AMP-binding enzyme AL474_11965 PF13193 AMP-binding enzyme C-terminal domain AL474_11970 PF03401 Tripartite tricarboxylate transporter family receptor AL474_12010 PF14031 Putative serine dehydratase domain AL474_12010 PF01168 Alanine racemase, N-terminal domain AL474_12015 PF07411 Domain of unknown function (DUF1508) AL474_12020 PF01145 SPFH domain / Band 7 family AL474_12030 PF01042 Endoribonuclease L-PSP AL474_12060 PF03837 RecT family AL474_12095 PF00589 Phage integrase family AL474_12115 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_12115 PF03466 LysR substrate binding domain AL474_12130 PF14849 YidC periplasmic domain AL474_12130 PF02096 60Kd inner membrane protein AL474_12135 PF01809 Putative membrane protein insertion efficiency factor AL474_12140 PF00825 Ribonuclease P AL474_12145 PF00468 Ribosomal protein L34 AL474_12150 PF11638 DnaA N-terminal domain AL474_12150 PF08299 Bacterial dnaA protein helix-turn-helix AL474_12150 PF00308 Bacterial dnaA protein AL474_12155 PF02768 DNA polymerase III beta subunit, C-terminal domain AL474_12155 PF00712 DNA polymerase III beta subunit, N-terminal domain AL474_12155 PF02767 DNA polymerase III beta subunit, central domain AL474_12160 PF00986 DNA gyrase B subunit, carboxyl terminus AL474_12160 PF18053 DNA gyrase B subunit insert domain AL474_12160 PF00204 DNA gyrase B AL474_12160 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL474_12160 PF01751 Toprim domain AL474_12165 PF09339 IclR helix-turn-helix domain AL474_12165 PF01614 Bacterial transcriptional regulator AL474_12170 PF01425 Amidase AL474_12175 PF03401 Tripartite tricarboxylate transporter family receptor AL474_12185 PF01070 FMN-dependent dehydrogenase AL474_12210 PF00376 MerR family regulatory protein AL474_12210 PF09278 MerR, DNA binding AL474_12235 PF02803 Thiolase, C-terminal domain AL474_12235 PF00108 Thiolase, N-terminal domain AL474_12240 PF01039 Carboxyl transferase domain AL474_12245 PF02785 Biotin carboxylase C-terminal domain AL474_12245 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL474_12245 PF00364 Biotin-requiring enzyme AL474_12245 PF00289 Biotin carboxylase, N-terminal domain AL474_12255 PF00202 Aminotransferase class-III AL474_12260 PF03401 Tripartite tricarboxylate transporter family receptor AL474_12265 PF14031 Putative serine dehydratase domain AL474_12265 PF01168 Alanine racemase, N-terminal domain AL474_12270 PF16868 NMT1-like family AL474_12280 PF07715 TonB-dependent Receptor Plug Domain AL474_12280 PF00593 TonB dependent receptor AL474_12285 PF04361 Protein of unknown function (DUF494) AL474_12300 PF01131 DNA topoisomerase AL474_12300 PF01751 Toprim domain AL474_12310 PF00005 ABC transporter AL474_12315 PF00528 Binding-protein-dependent transport system inner membrane component AL474_12325 PF00171 Aldehyde dehydrogenase family AL474_12335 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL474_12335 PF00205 Thiamine pyrophosphate enzyme, central domain AL474_12335 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL474_12340 PF01037 Lrp/AsnC ligand binding domain AL474_12345 PF01062 Bestrophin, RFP-TM, chloride channel AL474_12355 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AL474_12370 PF02310 B12 binding domain AL474_12370 PF02574 Homocysteine S-methyltransferase AL474_12370 PF02607 B12 binding domain AL474_12370 PF00809 Pterin binding enzyme AL474_12370 PF02965 Vitamin B12 dependent methionine synthase, activation domain AL474_12375 PF07715 TonB-dependent Receptor Plug Domain AL474_12375 PF00593 TonB dependent receptor AL474_12380 PF01497 Periplasmic binding protein AL474_12385 PF05690 Thiazole biosynthesis protein ThiG AL474_12390 PF08543 Phosphomethylpyrimidine kinase AL474_12405 PF02321 Outer membrane efflux protein AL474_12410 PF01467 Cytidylyltransferase-like AL474_12420 PF01594 AI-2E family transporter AL474_12430 PF02254 TrkA-N domain AL474_12430 PF07885 Ion channel AL474_12440 PF00164 Ribosomal protein S12/S23 AL474_12445 PF00177 Ribosomal protein S7p/S5e AL474_12450 PF00679 Elongation factor G C-terminus AL474_12450 PF14492 Elongation Factor G, domain II AL474_12450 PF03764 Elongation factor G, domain IV AL474_12450 PF00009 Elongation factor Tu GTP binding domain AL474_12450 PF03144 Elongation factor Tu domain 2 AL474_12455 PF03144 Elongation factor Tu domain 2 AL474_12455 PF03143 Elongation factor Tu C-terminal domain AL474_12455 PF00009 Elongation factor Tu GTP binding domain AL474_12460 PF00338 Ribosomal protein S10p/S20e AL474_12465 PF00297 Ribosomal protein L3 AL474_12470 PF00573 Ribosomal protein L4/L1 family AL474_12475 PF00276 Ribosomal protein L23 AL474_12480 PF00181 Ribosomal Proteins L2, RNA binding domain AL474_12480 PF03947 Ribosomal Proteins L2, C-terminal domain AL474_12485 PF00203 Ribosomal protein S19 AL474_12490 PF00237 Ribosomal protein L22p/L17e AL474_12495 PF07650 KH domain AL474_12495 PF00189 Ribosomal protein S3, C-terminal domain AL474_12500 PF00252 Ribosomal protein L16p/L10e AL474_12505 PF00831 Ribosomal L29 protein AL474_12510 PF00366 Ribosomal protein S17 AL474_12520 PF00171 Aldehyde dehydrogenase family AL474_12530 PF00238 Ribosomal protein L14p/L23e AL474_12535 PF17136 Ribosomal proteins 50S L24/mitochondrial 39S L24 AL474_12540 PF00281 Ribosomal protein L5 AL474_12540 PF00673 ribosomal L5P family C-terminus AL474_12545 PF00253 Ribosomal protein S14p/S29e AL474_12550 PF00410 Ribosomal protein S8 AL474_12555 PF00347 Ribosomal protein L6 AL474_12560 PF00861 Ribosomal L18 of archaea, bacteria, mitoch. and chloroplast AL474_12565 PF00333 Ribosomal protein S5, N-terminal domain AL474_12565 PF03719 Ribosomal protein S5, C-terminal domain AL474_12570 PF00327 Ribosomal protein L30p/L7e AL474_12575 PF00828 Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A AL474_12580 PF00344 SecY translocase AL474_12585 PF01176 Translation initiation factor 1A / IF-1 AL474_12590 PF00444 Ribosomal protein L36 AL474_12595 PF00416 Ribosomal protein S13/S18 AL474_12600 PF00411 Ribosomal protein S11 AL474_12605 PF01479 S4 domain AL474_12605 PF00163 Ribosomal protein S4/S9 N-terminal domain AL474_12610 PF01000 RNA polymerase Rpb3/RpoA insert domain AL474_12610 PF03118 Bacterial RNA polymerase, alpha chain C terminal domain AL474_12610 PF01193 RNA polymerase Rpb3/Rpb11 dimerisation domain AL474_12615 PF01196 Ribosomal protein L17 AL474_12625 PF03091 CutA1 divalent ion tolerance protein AL474_12635 PF00892 EamA-like transporter family AL474_12640 PF00490 Delta-aminolevulinic acid dehydratase AL474_12645 PF01926 50S ribosome-binding GTPase AL474_12650 PF00034 Cytochrome c AL474_12655 PF05140 ResB-like family AL474_12660 PF01578 Cytochrome C assembly protein AL474_12665 PF02784 Pyridoxal-dependent decarboxylase, pyridoxal binding domain AL474_12665 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AL474_12670 PF01491 Frataxin-like domain AL474_12675 PF17092 Penicillin-binding protein OB-like domain AL474_12675 PF00905 Penicillin binding protein transpeptidase domain AL474_12675 PF00912 Transglycosylase AL474_12680 PF01202 Shikimate kinase AL474_12685 PF01761 3-dehydroquinate synthase AL474_12690 PF01966 HD domain AL474_12690 PF13286 Phosphohydrolase-associated domain AL474_12695 PF13417 Glutathione S-transferase, N-terminal domain AL474_12695 PF00043 Glutathione S-transferase, C-terminal domain AL474_12700 PF17760 UvrA interaction domain AL474_12700 PF17755 UvrA DNA-binding domain AL474_12715 PF00593 TonB dependent receptor AL474_12715 PF07715 TonB-dependent Receptor Plug Domain AL474_12725 PF03328 HpcH/HpaI aldolase/citrate lyase family AL474_12745 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_12745 PF03466 LysR substrate binding domain AL474_12755 PF03401 Tripartite tricarboxylate transporter family receptor AL474_12760 PF00534 Glycosyl transferases group 1 AL474_12760 PF13439 Glycosyltransferase Family 4 AL474_12770 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_12770 PF03466 LysR substrate binding domain AL474_12780 PF00528 Binding-protein-dependent transport system inner membrane component AL474_12785 PF00005 ABC transporter AL474_12805 PF01274 Malate synthase AL474_12825 PF01040 UbiA prenyltransferase family AL474_12830 PF00155 Aminotransferase class I and II AL474_12835 PF13185 GAF domain AL474_12840 PF00701 Dihydrodipicolinate synthetase family AL474_12850 PF04972 BON domain AL474_12850 PF01476 LysM domain AL474_12855 PF05690 Thiazole biosynthesis protein ThiG AL474_12855 PF02597 ThiS family AL474_12860 PF00561 alpha/beta hydrolase fold AL474_12865 PF02390 Putative methyltransferase AL474_12880 PF00682 HMGL-like AL474_12885 PF03401 Tripartite tricarboxylate transporter family receptor AL474_12900 PF07702 UTRA domain AL474_12900 PF00392 Bacterial regulatory proteins, gntR family AL474_12905 PF03401 Tripartite tricarboxylate transporter family receptor AL474_12915 PF07702 UTRA domain AL474_12915 PF00392 Bacterial regulatory proteins, gntR family AL474_12920 PF00528 Binding-protein-dependent transport system inner membrane component AL474_12930 PF00005 ABC transporter AL474_12935 PF00378 Enoyl-CoA hydratase/isomerase AL474_12940 PF03401 Tripartite tricarboxylate transporter family receptor AL474_12945 PF00550 Phosphopantetheine attachment site AL474_12945 PF08240 Alcohol dehydrogenase GroES-like domain AL474_12945 PF08990 Erythronolide synthase docking AL474_12945 PF16197 Ketoacyl-synthetase C-terminal extension AL474_12945 PF00109 Beta-ketoacyl synthase, N-terminal domain AL474_12945 PF02801 Beta-ketoacyl synthase, C-terminal domain AL474_12945 PF14765 Polyketide synthase dehydratase AL474_12945 PF08659 KR domain AL474_12945 PF00698 Acyl transferase domain AL474_12950 PF02515 CoA-transferase family III AL474_12955 PF00440 Bacterial regulatory proteins, tetR family AL474_12960 PF00293 NUDIX domain AL474_12960 PF09297 NADH pyrophosphatase zinc ribbon domain AL474_12965 PF00970 Oxidoreductase FAD-binding domain AL474_12965 PF00111 2Fe-2S iron-sulfur cluster binding domain AL474_12965 PF00175 Oxidoreductase NAD-binding domain AL474_12970 PF01425 Amidase AL474_12980 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_12980 PF03466 LysR substrate binding domain AL474_12985 PF13458 Periplasmic binding protein AL474_12995 PF00005 ABC transporter AL474_13005 PF02653 Branched-chain amino acid transport system / permease component AL474_13030 PF02749 Quinolinate phosphoribosyl transferase, N-terminal domain AL474_13030 PF01729 Quinolinate phosphoribosyl transferase, C-terminal domain AL474_13045 PF03721 UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain AL474_13045 PF00984 UDP-glucose/GDP-mannose dehydrogenase family, central domain AL474_13045 PF03720 UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain AL474_13050 PF07690 Major Facilitator Superfamily AL474_13055 PF12804 MobA-like NTP transferase domain AL474_13055 PF14602 Hexapeptide repeat of succinyl-transferase AL474_13055 PF00132 Bacterial transferase hexapeptide (six repeats) AL474_13075 PF02630 SCO1/SenC AL474_13080 PF01040 UbiA prenyltransferase family AL474_13085 PF02628 Cytochrome oxidase assembly protein AL474_13105 PF00510 Cytochrome c oxidase subunit III AL474_13120 PF00115 Cytochrome C and Quinol oxidase polypeptide I AL474_13125 PF02790 Cytochrome C oxidase subunit II, transmembrane domain AL474_13125 PF00116 Cytochrome C oxidase subunit II, periplasmic domain AL474_13135 PF00999 Sodium/hydrogen exchanger family AL474_13140 PF00149 Calcineurin-like phosphoesterase AL474_13145 PF00140 Sigma-70 factor, region 1.2 AL474_13145 PF04545 Sigma-70, region 4 AL474_13145 PF04542 Sigma-70 region 2 AL474_13155 PF00756 Putative esterase AL474_13160 PF00107 Zinc-binding dehydrogenase AL474_13160 PF08240 Alcohol dehydrogenase GroES-like domain AL474_13170 PF01645 Conserved region in glutamate synthase AL474_13170 PF01493 GXGXG motif AL474_13170 PF00310 Glutamine amidotransferases class-II AL474_13170 PF04898 Glutamate synthase central domain AL474_13175 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL474_13175 PF14691 Dihydroprymidine dehydrogenase domain II, 4Fe-4S cluster AL474_13180 PF03922 OmpW family AL474_13185 PF03401 Tripartite tricarboxylate transporter family receptor AL474_13190 PF00005 ABC transporter AL474_13195 PF02405 Permease MlaE AL474_13200 PF02470 MlaD protein AL474_13205 PF04333 MlaA lipoprotein AL474_13220 PF01061 ABC-2 type transporter AL474_13230 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AL474_13235 PF01634 ATP phosphoribosyltransferase AL474_13240 PF00815 Histidinol dehydrogenase AL474_13245 PF00155 Aminotransferase class I and II AL474_13250 PF00475 Imidazoleglycerol-phosphate dehydratase AL474_13255 PF00117 Glutamine amidotransferase class-I AL474_13260 PF00977 Histidine biosynthesis protein AL474_13265 PF00977 Histidine biosynthesis protein AL474_13270 PF01502 Phosphoribosyl-AMP cyclohydrolase AL474_13275 PF01503 Phosphoribosyl-ATP pyrophosphohydrolase AL474_13280 PF01230 HIT domain AL474_13285 PF02416 mttA/Hcf106 family AL474_13290 PF02416 mttA/Hcf106 family AL474_13295 PF00902 Sec-independent protein translocase protein (TatC) AL474_13305 PF03401 Tripartite tricarboxylate transporter family receptor AL474_13310 PF02917 Pertussis toxin, subunit 1 AL474_13315 PF03440 Aerolysin/Pertussis toxin (APT) domain AL474_13315 PF02918 Pertussis toxin, subunit 2 and 3, C-terminal domain AL474_13320 PF09275 Pertussis toxin S4 subunit AL474_13325 PF09276 Pertussis toxin S5 subunit AL474_13330 PF03440 Aerolysin/Pertussis toxin (APT) domain AL474_13330 PF02918 Pertussis toxin, subunit 2 and 3, C-terminal domain AL474_13335 PF04956 TrbC/VIRB2 family AL474_13340 PF05101 Type IV secretory pathway, VirB3-like protein AL474_13345 PF03135 CagE, TrbE, VirB family, component of type IV transporter system AL474_13360 PF04335 VirB8 protein AL474_13365 PF03524 Conjugal transfer protein AL474_13370 PF03743 Bacterial conjugation TrbI-like protein AL474_13375 PF00437 Type II/IV secretion system protein AL474_13385 PF00892 EamA-like transporter family AL474_13405 PF01926 50S ribosome-binding GTPase AL474_13405 PF12631 MnmE helical domain AL474_13405 PF10396 GTP-binding protein TrmE N-terminus AL474_13410 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL474_13420 PF00528 Binding-protein-dependent transport system inner membrane component AL474_13420 PF12911 N-terminal TM domain of oligopeptide transport permease C AL474_13435 PF01960 ArgJ family AL474_13445 PF00293 NUDIX domain AL474_13465 PF02321 Outer membrane efflux protein AL474_13470 PF00873 AcrB/AcrD/AcrF family AL474_13475 PF00873 AcrB/AcrD/AcrF family AL474_13480 PF13533 Biotin-lipoyl like AL474_13485 PF07072 Cell division protein AL474_13490 PF01121 Dephospho-CoA kinase AL474_13495 PF06750 Bacterial Peptidase A24 N-terminal domain AL474_13495 PF01478 Type IV leader peptidase family AL474_13510 PF02569 Pantoate-beta-alanine ligase AL474_13515 PF02616 Segregation and condensation protein ScpA AL474_13525 PF07690 Major Facilitator Superfamily AL474_13530 PF02782 FGGY family of carbohydrate kinases, C-terminal domain AL474_13530 PF00370 FGGY family of carbohydrate kinases, N-terminal domain AL474_13540 PF03401 Tripartite tricarboxylate transporter family receptor AL474_13545 PF00005 ABC transporter AL474_13550 PF00528 Binding-protein-dependent transport system inner membrane component AL474_13555 PF00528 Binding-protein-dependent transport system inner membrane component AL474_13560 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL474_13565 PF00005 ABC transporter AL474_13570 PF18075 FtsX extracellular domain AL474_13575 PF03975 CheD chemotactic sensory transduction AL474_13585 PF00633 Helix-hairpin-helix motif AL474_13585 PF00730 HhH-GPD superfamily base excision DNA repair protein AL474_13585 PF14815 NUDIX domain AL474_13585 PF10576 Iron-sulfur binding domain of endonuclease III AL474_13595 PF08241 Methyltransferase domain AL474_13605 PF02515 CoA-transferase family III AL474_13610 PF02515 CoA-transferase family III AL474_13620 PF03401 Tripartite tricarboxylate transporter family receptor AL474_13625 PF00378 Enoyl-CoA hydratase/isomerase AL474_13640 PF00682 HMGL-like AL474_13645 PF00378 Enoyl-CoA hydratase/isomerase AL474_13650 PF02515 CoA-transferase family III AL474_13665 PF06628 Catalase-related immune-responsive AL474_13665 PF00199 Catalase AL474_13670 PF00528 Binding-protein-dependent transport system inner membrane component AL474_13675 PF00005 ABC transporter AL474_13685 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AL474_13690 PF01546 Peptidase family M20/M25/M40 AL474_13690 PF07687 Peptidase dimerisation domain AL474_13695 PF00005 ABC transporter AL474_13695 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL474_13700 PF00005 ABC transporter AL474_13700 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL474_13705 PF12911 N-terminal TM domain of oligopeptide transport permease C AL474_13705 PF00528 Binding-protein-dependent transport system inner membrane component AL474_13710 PF00528 Binding-protein-dependent transport system inner membrane component AL474_13715 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL474_13720 PF10396 GTP-binding protein TrmE N-terminus AL474_13720 PF12631 MnmE helical domain AL474_13720 PF01926 50S ribosome-binding GTPase AL474_13730 PF00486 Transcriptional regulatory protein, C terminal AL474_13730 PF00072 Response regulator receiver domain AL474_13735 PF00512 His Kinase A (phospho-acceptor) domain AL474_13735 PF00672 HAMP domain AL474_13735 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL474_13750 PF01970 Tripartite tricarboxylate transporter TctA family AL474_13755 PF00155 Aminotransferase class I and II AL474_13760 PF00313 'Cold-shock' DNA-binding domain AL474_13765 PF13932 GidA associated domain AL474_13765 PF01134 Glucose inhibited division protein A AL474_13770 PF02527 rRNA small subunit methyltransferase G AL474_13775 PF13614 AAA domain AL474_13785 PF02195 ParB-like nuclease domain AL474_13785 PF17762 HTH domain found in ParB protein AL474_13815 PF00009 Elongation factor Tu GTP binding domain AL474_13815 PF03144 Elongation factor Tu domain 2 AL474_13815 PF03143 Elongation factor Tu C-terminal domain AL474_13825 PF00584 SecE/Sec61-gamma subunits of protein translocation complex AL474_13830 PF00467 KOW motif AL474_13830 PF02357 Transcription termination factor nusG AL474_13835 PF00298 Ribosomal protein L11, RNA binding domain AL474_13835 PF03946 Ribosomal protein L11, N-terminal domain AL474_13840 PF00687 Ribosomal protein L1p/L10e family AL474_13845 PF00466 Ribosomal protein L10 AL474_13850 PF16320 Ribosomal protein L7/L12 dimerisation domain AL474_13850 PF00542 Ribosomal protein L7/L12 C-terminal domain AL474_13855 PF00562 RNA polymerase Rpb2, domain 6 AL474_13855 PF10385 RNA polymerase beta subunit external 1 domain AL474_13855 PF04561 RNA polymerase Rpb2, domain 2 AL474_13855 PF04563 RNA polymerase beta subunit AL474_13855 PF04565 RNA polymerase Rpb2, domain 3 AL474_13855 PF04560 RNA polymerase Rpb2, domain 7 AL474_13860 PF04998 RNA polymerase Rpb1, domain 5 AL474_13860 PF05000 RNA polymerase Rpb1, domain 4 AL474_13860 PF04983 RNA polymerase Rpb1, domain 3 AL474_13860 PF00623 RNA polymerase Rpb1, domain 2 AL474_13860 PF04997 RNA polymerase Rpb1, domain 1 AL474_13890 PF00486 Transcriptional regulatory protein, C terminal AL474_13890 PF00072 Response regulator receiver domain AL474_13900 PF02515 CoA-transferase family III AL474_13920 PF03466 LysR substrate binding domain AL474_13920 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_13925 PF00378 Enoyl-CoA hydratase/isomerase AL474_13945 PF02091 Glycyl-tRNA synthetase alpha subunit AL474_13950 PF05746 DALR anticodon binding domain AL474_13950 PF02092 Glycyl-tRNA synthetase beta subunit AL474_13960 PF01553 Acyltransferase AL474_13970 PF00903 Glyoxalase/Bleomycin resistance protein/Dioxygenase superfamily AL474_13975 PF01327 Polypeptide deformylase AL474_14015 PF00561 alpha/beta hydrolase fold AL474_14020 PF07021 Methionine biosynthesis protein MetW AL474_14020 PF00561 alpha/beta hydrolase fold AL474_14030 PF07690 Major Facilitator Superfamily AL474_14040 PF01177 Asp/Glu/Hydantoin racemase AL474_14045 PF00005 ABC transporter AL474_14050 PF00528 Binding-protein-dependent transport system inner membrane component AL474_14055 PF00528 Binding-protein-dependent transport system inner membrane component AL474_14060 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL474_14090 PF03401 Tripartite tricarboxylate transporter family receptor AL474_14105 PF00175 Oxidoreductase NAD-binding domain AL474_14105 PF00970 Oxidoreductase FAD-binding domain AL474_14105 PF00111 2Fe-2S iron-sulfur cluster binding domain AL474_14110 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL474_14120 PF03480 Bacterial extracellular solute-binding protein, family 7 AL474_14150 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL474_14150 PF00183 Hsp90 protein AL474_14155 PF00043 Glutathione S-transferase, C-terminal domain AL474_14155 PF13417 Glutathione S-transferase, N-terminal domain AL474_14160 PF01510 N-acetylmuramoyl-L-alanine amidase AL474_14170 PF01578 Cytochrome C assembly protein AL474_14175 PF02881 SRP54-type protein, helical bundle domain AL474_14175 PF02978 Signal peptide binding domain AL474_14175 PF00448 SRP54-type protein, GTPase domain AL474_14190 PF02719 Polysaccharide biosynthesis protein AL474_14200 PF10997 Alternate to MurJ AL474_14205 PF00862 Sucrose synthase AL474_14205 PF00534 Glycosyl transferases group 1 AL474_14210 PF02397 Bacterial sugar transferase AL474_14215 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AL474_14225 PF02350 UDP-N-acetylglucosamine 2-epimerase AL474_14230 PF01041 DegT/DnrJ/EryC1/StrS aminotransferase family AL474_14235 PF00132 Bacterial transferase hexapeptide (six repeats) AL474_14240 PF02894 Oxidoreductase family, C-terminal alpha/beta domain AL474_14240 PF01408 Oxidoreductase family, NAD-binding Rossmann fold AL474_14245 PF01075 Glycosyltransferase family 9 (heptosyltransferase) AL474_14250 PF04413 3-Deoxy-D-manno-octulosonic-acid transferase (kdotransferase) AL474_14250 PF00534 Glycosyl transferases group 1 AL474_14260 PF03309 Type III pantothenate kinase AL474_14270 PF02405 Permease MlaE AL474_14275 PF00005 ABC transporter AL474_14300 PF00768 D-alanyl-D-alanine carboxypeptidase AL474_14300 PF07943 Penicillin-binding protein 5, C-terminal domain AL474_14305 PF01063 Amino-transferase class IV AL474_14310 PF04359 Protein of unknown function (DUF493) AL474_14315 PF03099 Biotin/lipoate A/B protein ligase family AL474_14320 PF04055 Radical SAM superfamily AL474_14320 PF16881 N-terminal domain of lipoyl synthase of Radical_SAM family AL474_14325 PF00908 dTDP-4-dehydrorhamnose 3,5-epimerase AL474_14330 PF04321 RmlD substrate binding domain AL474_14335 PF16363 GDP-mannose 4,6 dehydratase AL474_14350 PF01053 Cys/Met metabolism PLP-dependent enzyme AL474_14355 PF01323 DSBA-like thioredoxin domain AL474_14355 PF00085 Thioredoxin AL474_14365 PF03485 Arginyl tRNA synthetase N terminal domain AL474_14365 PF00750 tRNA synthetases class I (R) AL474_14365 PF05746 DALR anticodon binding domain AL474_14385 PF00528 Binding-protein-dependent transport system inner membrane component AL474_14390 PF00528 Binding-protein-dependent transport system inner membrane component AL474_14395 PF13416 Bacterial extracellular solute-binding protein AL474_14400 PF00005 ABC transporter AL474_14400 PF17912 MalK OB fold domain AL474_14405 PF00149 Calcineurin-like phosphoesterase AL474_14415 PF12857 TOBE-like domain AL474_14415 PF00005 ABC transporter AL474_14420 PF00528 Binding-protein-dependent transport system inner membrane component AL474_14440 PF01425 Amidase AL474_14445 PF00682 HMGL-like AL474_14445 PF08502 LeuA allosteric (dimerisation) domain AL474_14455 PF04963 Sigma-54 factor, core binding domain AL474_14455 PF04552 Sigma-54, DNA binding domain AL474_14455 PF00309 Sigma-54 factor, Activator interacting domain (AID) AL474_14465 PF03466 LysR substrate binding domain AL474_14465 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_14485 PF00291 Pyridoxal-phosphate dependent enzyme AL474_14485 PF00585 C-terminal regulatory domain of Threonine dehydratase AL474_14500 PF07729 FCD domain AL474_14500 PF00392 Bacterial regulatory proteins, gntR family AL474_14505 PF02515 CoA-transferase family III AL474_14515 PF00378 Enoyl-CoA hydratase/isomerase AL474_14520 PF01494 FAD binding domain AL474_14525 PF01494 FAD binding domain AL474_14530 PF03401 Tripartite tricarboxylate transporter family receptor AL474_14550 PF02682 Carboxyltransferase domain, subdomain C and D AL474_14560 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_14560 PF03466 LysR substrate binding domain AL474_14565 PF01842 ACT domain AL474_14565 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL474_14565 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL474_14575 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL474_14575 PF00672 HAMP domain AL474_14575 PF00512 His Kinase A (phospho-acceptor) domain AL474_14580 PF00072 Response regulator receiver domain AL474_14580 PF00486 Transcriptional regulatory protein, C terminal AL474_14585 PF11808 Phosphate regulon sensor protein PhoR AL474_14585 PF00989 PAS fold AL474_14585 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL474_14585 PF00512 His Kinase A (phospho-acceptor) domain AL474_14590 PF00072 Response regulator receiver domain AL474_14590 PF00486 Transcriptional regulatory protein, C terminal AL474_14595 PF01209 ubiE/COQ5 methyltransferase family AL474_14610 PF03109 ABC1 family AL474_14645 PF00271 Helicase conserved C-terminal domain AL474_14645 PF00270 DEAD/DEAH box helicase AL474_14650 PF01810 LysE type translocator AL474_14655 PF00009 Elongation factor Tu GTP binding domain AL474_14655 PF03144 Elongation factor Tu domain 2 AL474_14655 PF16658 Class II release factor RF3, C-terminal domain AL474_14665 PF00210 Ferritin-like domain AL474_14695 PF01588 Putative tRNA binding domain AL474_14695 PF09334 tRNA synthetases class I (M) AL474_14705 PF10609 NUBPL iron-transfer P-loop NTPase AL474_14720 PF00692 dUTPase AL474_14745 PF03709 Orn/Lys/Arg decarboxylase, N-terminal domain AL474_14745 PF03711 Orn/Lys/Arg decarboxylase, C-terminal domain AL474_14745 PF01276 Orn/Lys/Arg decarboxylase, major domain AL474_14760 PF00081 Iron/manganese superoxide dismutases, alpha-hairpin domain AL474_14760 PF02777 Iron/manganese superoxide dismutases, C-terminal domain AL474_14765 PF02535 ZIP Zinc transporter AL474_14770 PF01571 Aminomethyltransferase folate-binding domain AL474_14770 PF08669 Glycine cleavage T-protein C-terminal barrel domain AL474_14775 PF01597 Glycine cleavage H-protein AL474_14780 PF02347 Glycine cleavage system P-protein AL474_14785 PF07729 FCD domain AL474_14785 PF00392 Bacterial regulatory proteins, gntR family AL474_14790 PF02515 CoA-transferase family III AL474_14820 PF12146 Serine aminopeptidase, S33 AL474_14830 PF02426 Muconolactone delta-isomerase AL474_14835 PF01144 Coenzyme A transferase AL474_14840 PF01144 Coenzyme A transferase AL474_14845 PF01614 Bacterial transcriptional regulator AL474_14845 PF09339 IclR helix-turn-helix domain AL474_14855 PF02667 Short chain fatty acid transporter AL474_14860 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AL474_14860 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AL474_14875 PF00311 Phosphoenolpyruvate carboxylase AL474_14880 PF06508 Queuosine biosynthesis protein QueC AL474_14905 PF01565 FAD binding domain AL474_14905 PF02913 FAD linked oxidases, C-terminal domain AL474_14910 PF00171 Aldehyde dehydrogenase family AL474_14915 PF01964 Radical SAM ThiC family AL474_14915 PF13667 ThiC-associated domain AL474_14925 PF09518 HindIII restriction endonuclease AL474_14955 PF02627 Carboxymuconolactone decarboxylase family AL474_14965 PF00392 Bacterial regulatory proteins, gntR family AL474_14965 PF07702 UTRA domain AL474_14970 PF03480 Bacterial extracellular solute-binding protein, family 7 AL474_14975 PF06808 Tripartite ATP-independent periplasmic transporter, DctM component AL474_14985 PF03401 Tripartite tricarboxylate transporter family receptor AL474_14990 PF01288 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase (HPPK) AL474_14995 PF01743 Poly A polymerase head domain AL474_14995 PF12627 Probable RNA and SrmB- binding site of polymerase A AL474_14995 PF12626 Polymerase A arginine-rich C-terminus AL474_15005 PF00308 Bacterial dnaA protein AL474_15010 PF00586 AIR synthase related protein, N-terminal domain AL474_15010 PF02769 AIR synthase related protein, C-terminal domain AL474_15025 PF09335 SNARE associated Golgi protein AL474_15030 PF11741 AMIN domain AL474_15030 PF01520 N-acetylmuramoyl-L-alanine amidase AL474_15035 PF02367 Threonylcarbamoyl adenosine biosynthesis protein TsaE AL474_15040 PF00206 Lyase AL474_15040 PF10415 Fumarase C C-terminus AL474_15050 PF03401 Tripartite tricarboxylate transporter family receptor AL474_15055 PF03466 LysR substrate binding domain AL474_15055 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_15065 PF02515 CoA-transferase family III AL474_15070 PF03401 Tripartite tricarboxylate transporter family receptor AL474_15095 PF01654 Cytochrome bd terminal oxidase subunit I AL474_15100 PF02322 Cytochrome bd terminal oxidase subunit II AL474_15105 PF08173 Membrane bound YbgT-like protein AL474_15110 PF00664 ABC transporter transmembrane region AL474_15110 PF00005 ABC transporter AL474_15120 PF00156 Phosphoribosyl transferase domain AL474_15160 PF04386 Stringent starvation protein B AL474_15165 PF02798 Glutathione S-transferase, N-terminal domain AL474_15165 PF00043 Glutathione S-transferase, C-terminal domain AL474_15170 PF02167 Cytochrome C1 family AL474_15175 PF00033 Cytochrome b/b6/petB AL474_15175 PF00032 Cytochrome b(C-terminal)/b6/petD AL474_15180 PF10399 Ubiquitinol-cytochrome C reductase Fe-S subunit TAT signal AL474_15180 PF00355 Rieske [2Fe-2S] domain AL474_15185 PF01741 Large-conductance mechanosensitive channel, MscL AL474_15190 PF01784 NIF3 (NGG1p interacting factor 3) AL474_15205 PF04299 Putative FMN-binding domain AL474_15210 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL474_15215 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL474_15220 PF07859 alpha/beta hydrolase fold AL474_15230 PF08502 LeuA allosteric (dimerisation) domain AL474_15230 PF00682 HMGL-like AL474_15240 PF00920 Dehydratase family AL474_15245 PF07690 Major Facilitator Superfamily AL474_15250 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_15250 PF03466 LysR substrate binding domain AL474_15260 PF06941 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C) AL474_15290 PF07859 alpha/beta hydrolase fold AL474_15300 PF02653 Branched-chain amino acid transport system / permease component AL474_15305 PF11862 Domain of unknown function (DUF3382) AL474_15305 PF02653 Branched-chain amino acid transport system / permease component AL474_15310 PF00005 ABC transporter AL474_15310 PF12399 Branched-chain amino acid ATP-binding cassette transporter AL474_15315 PF00005 ABC transporter AL474_15330 PF00378 Enoyl-CoA hydratase/isomerase AL474_15335 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL474_15335 PF02770 Acyl-CoA dehydrogenase, middle domain AL474_15335 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL474_15340 PF00501 AMP-binding enzyme AL474_15340 PF13193 AMP-binding enzyme C-terminal domain AL474_15360 PF00202 Aminotransferase class-III AL474_15365 PF02581 Thiamine monophosphate synthase AL474_15375 PF00301 Rubredoxin AL474_15380 PF02622 Uncharacterized ACR, COG1678 AL474_15385 PF03652 Holliday junction resolvase AL474_15390 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AL474_15390 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AL474_15395 PF01979 Amidohydrolase family AL474_15400 PF01553 Acyltransferase AL474_15405 PF00149 Calcineurin-like phosphoesterase AL474_15415 PF00912 Transglycosylase AL474_15430 PF00501 AMP-binding enzyme AL474_15430 PF13193 AMP-binding enzyme C-terminal domain AL474_15435 PF03401 Tripartite tricarboxylate transporter family receptor AL474_15450 PF12706 Beta-lactamase superfamily domain AL474_15455 PF03401 Tripartite tricarboxylate transporter family receptor AL474_15465 PF11737 Protein of unknown function (DUF3300) AL474_15475 PF03707 Bacterial signalling protein N terminal repeat AL474_15475 PF00990 Diguanylate cyclase, GGDEF domain AL474_15475 PF00563 EAL domain AL474_15480 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AL474_15480 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL474_15485 PF13532 2OG-Fe(II) oxygenase superfamily AL474_15490 PF09859 Oxygenase, catalysing oxidative methylation of damaged DNA AL474_15500 PF00005 ABC transporter AL474_15505 PF01032 FecCD transport family AL474_15510 PF01497 Periplasmic binding protein AL474_15515 PF05171 Haemin-degrading HemS.ChuX domain AL474_15520 PF07715 TonB-dependent Receptor Plug Domain AL474_15520 PF04886 PT repeat AL474_15520 PF00593 TonB dependent receptor AL474_15525 PF16220 Domain of unknown function (DUF4880) AL474_15525 PF04773 FecR protein AL474_15530 PF04542 Sigma-70 region 2 AL474_15530 PF08281 Sigma-70, region 4 AL474_15555 PF02423 Ornithine cyclodeaminase/mu-crystallin family AL474_15565 PF00392 Bacterial regulatory proteins, gntR family AL474_15565 PF07729 FCD domain AL474_15585 PF00171 Aldehyde dehydrogenase family AL474_15595 PF00175 Oxidoreductase NAD-binding domain AL474_15595 PF00111 2Fe-2S iron-sulfur cluster binding domain AL474_15595 PF00970 Oxidoreductase FAD-binding domain AL474_15620 PF03458 UPF0126 domain AL474_15625 PF02812 Glu/Leu/Phe/Val dehydrogenase, dimerisation domain AL474_15625 PF00208 Glutamate/Leucine/Phenylalanine/Valine dehydrogenase AL474_15630 PF03372 Endonuclease/Exonuclease/phosphatase family AL474_15635 PF00156 Phosphoribosyl transferase domain AL474_15640 PF02637 GatB domain AL474_15640 PF02934 GatB/GatE catalytic domain AL474_15645 PF01425 Amidase AL474_15650 PF02686 Glu-tRNAGln amidotransferase C subunit AL474_15660 PF04085 rod shape-determining protein MreC AL474_15675 PF01098 Cell cycle protein AL474_15680 PF02615 Malate/L-lactate dehydrogenase AL474_15685 PF00939 Sodium:sulfate symporter transmembrane region AL474_15690 PF00440 Bacterial regulatory proteins, tetR family AL474_15700 PF00696 Amino acid kinase family AL474_15705 PF03180 NLPA lipoprotein AL474_15710 PF00578 AhpC/TSA family AL474_15715 PF04972 BON domain AL474_15720 PF13580 SIS domain AL474_15730 PF00590 Tetrapyrrole (Corrin/Porphyrin) Methylases AL474_15735 PF01035 6-O-methylguanine DNA methyltransferase, DNA binding domain AL474_15735 PF02870 6-O-methylguanine DNA methyltransferase, ribonuclease-like domain AL474_15755 PF02515 CoA-transferase family III AL474_15760 PF03401 Tripartite tricarboxylate transporter family receptor AL474_15765 PF02515 CoA-transferase family III AL474_15785 PF09339 IclR helix-turn-helix domain AL474_15790 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL474_15800 PF03401 Tripartite tricarboxylate transporter family receptor AL474_15805 PF00725 3-hydroxyacyl-CoA dehydrogenase, C-terminal domain AL474_15805 PF00378 Enoyl-CoA hydratase/isomerase AL474_15805 PF02737 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain AL474_15810 PF02515 CoA-transferase family III AL474_15815 PF00205 Thiamine pyrophosphate enzyme, central domain AL474_15815 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL474_15815 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL474_15820 PF03466 LysR substrate binding domain AL474_15820 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_15830 PF03401 Tripartite tricarboxylate transporter family receptor AL474_15840 PF03401 Tripartite tricarboxylate transporter family receptor AL474_15850 PF00892 EamA-like transporter family AL474_15855 PF01810 LysE type translocator AL474_15860 PF12146 Serine aminopeptidase, S33 AL474_15875 PF13231 Dolichyl-phosphate-mannose-protein mannosyltransferase AL474_15880 PF00535 Glycosyl transferase family 2 AL474_15895 PF03616 Sodium/glutamate symporter AL474_15905 PF02667 Short chain fatty acid transporter AL474_15920 PF00929 Exonuclease AL474_15935 PF03764 Elongation factor G, domain IV AL474_15935 PF00009 Elongation factor Tu GTP binding domain AL474_15935 PF03144 Elongation factor Tu domain 2 AL474_15935 PF00679 Elongation factor G C-terminus AL474_15935 PF14492 Elongation Factor G, domain II AL474_15940 PF00582 Universal stress protein family AL474_15950 PF00392 Bacterial regulatory proteins, gntR family AL474_15950 PF00155 Aminotransferase class I and II AL474_15960 PF02308 MgtC family AL474_15965 PF03471 Transporter associated domain AL474_15965 PF03741 Integral membrane protein TerC family AL474_15970 PF02515 CoA-transferase family III AL474_15975 PF00378 Enoyl-CoA hydratase/isomerase AL474_15980 PF03401 Tripartite tricarboxylate transporter family receptor AL474_15985 PF03466 LysR substrate binding domain AL474_15985 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_15990 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL474_15990 PF02770 Acyl-CoA dehydrogenase, middle domain AL474_15990 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL474_16000 PF00108 Thiolase, N-terminal domain AL474_16000 PF02803 Thiolase, C-terminal domain AL474_16020 PF03466 LysR substrate binding domain AL474_16020 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_16025 PF00313 'Cold-shock' DNA-binding domain AL474_16035 PF00392 Bacterial regulatory proteins, gntR family AL474_16035 PF07729 FCD domain AL474_16040 PF00171 Aldehyde dehydrogenase family AL474_16045 PF02667 Short chain fatty acid transporter AL474_16050 PF00175 Oxidoreductase NAD-binding domain AL474_16050 PF00970 Oxidoreductase FAD-binding domain AL474_16050 PF00042 Globin AL474_16055 PF01042 Endoribonuclease L-PSP AL474_16060 PF03466 LysR substrate binding domain AL474_16060 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_16080 PF02515 CoA-transferase family III AL474_16090 PF03466 LysR substrate binding domain AL474_16090 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_16095 PF02515 CoA-transferase family III AL474_16105 PF01794 Ferric reductase like transmembrane component AL474_16110 PF00174 Oxidoreductase molybdopterin binding domain AL474_16115 PF13419 Haloacid dehalogenase-like hydrolase AL474_16120 PF00849 RNA pseudouridylate synthase AL474_16120 PF01479 S4 domain AL474_16125 PF10150 Ribonuclease E/G family AL474_16125 PF00575 S1 RNA binding domain AL474_16125 PF12111 Polyribonucleotide phosphorylase C terminal AL474_16145 PF17848 Acetyl-coA carboxylase zinc finger domain AL474_16145 PF01039 Carboxyl transferase domain AL474_16150 PF00290 Tryptophan synthase alpha chain AL474_16155 PF00291 Pyridoxal-phosphate dependent enzyme AL474_16160 PF01546 Peptidase family M20/M25/M40 AL474_16160 PF07687 Peptidase dimerisation domain AL474_16165 PF02824 TGS domain AL474_16165 PF13291 ACT domain AL474_16165 PF04607 Region found in RelA / SpoT proteins AL474_16170 PF06167 Glucose-regulated metallo-peptidase M90 AL474_16180 PF01042 Endoribonuclease L-PSP AL474_16185 PF17767 Nicotinate phosphoribosyltransferase (NAPRTase) N-terminal domain AL474_16185 PF04095 Nicotinate phosphoribosyltransferase (NAPRTase) family AL474_16190 PF00037 4Fe-4S binding domain AL474_16190 PF11953 Domain of unknown function (DUF3470) AL474_16195 PF00175 Oxidoreductase NAD-binding domain AL474_16195 PF00970 Oxidoreductase FAD-binding domain AL474_16205 PF04060 Putative Fe-S cluster AL474_16210 PF00633 Helix-hairpin-helix motif AL474_16210 PF10576 Iron-sulfur binding domain of endonuclease III AL474_16210 PF00730 HhH-GPD superfamily base excision DNA repair protein AL474_16215 PF00005 ABC transporter AL474_16215 PF12399 Branched-chain amino acid ATP-binding cassette transporter AL474_16220 PF00005 ABC transporter AL474_16230 PF02653 Branched-chain amino acid transport system / permease component AL474_16245 PF01063 Amino-transferase class IV AL474_16250 PF12399 Branched-chain amino acid ATP-binding cassette transporter AL474_16250 PF00005 ABC transporter AL474_16265 PF02632 BioY family AL474_16270 PF02361 Cobalt transport protein AL474_16275 PF00005 ABC transporter AL474_16280 PF01641 SelR domain AL474_16285 PF04279 Intracellular septation protein A AL474_16300 PF03119 NAD-dependent DNA ligase C4 zinc finger domain AL474_16300 PF00533 BRCA1 C Terminus (BRCT) domain AL474_16300 PF01653 NAD-dependent DNA ligase adenylation domain AL474_16300 PF03120 NAD-dependent DNA ligase OB-fold domain AL474_16300 PF12826 Helix-hairpin-helix motif AL474_16310 PF06470 SMC proteins Flexible Hinge Domain AL474_16310 PF02463 RecF/RecN/SMC N terminal domain AL474_16315 PF07690 Major Facilitator Superfamily AL474_16320 PF03167 Uracil DNA glycosylase superfamily AL474_16325 PF00814 Glycoprotease family AL474_16330 PF00486 Transcriptional regulatory protein, C terminal AL474_16330 PF00072 Response regulator receiver domain AL474_16340 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL474_16340 PF00672 HAMP domain AL474_16340 PF00512 His Kinase A (phospho-acceptor) domain AL474_16345 PF00578 AhpC/TSA family AL474_16350 PF02627 Carboxymuconolactone decarboxylase family AL474_16370 PF00392 Bacterial regulatory proteins, gntR family AL474_16370 PF07729 FCD domain AL474_16385 PF03401 Tripartite tricarboxylate transporter family receptor AL474_16390 PF00389 D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain AL474_16390 PF02826 D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain AL474_16400 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_16400 PF03466 LysR substrate binding domain AL474_16410 PF00202 Aminotransferase class-III AL474_16415 PF00185 Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain AL474_16415 PF02729 Aspartate/ornithine carbamoyltransferase, carbamoyl-P binding domain AL474_16420 PF00764 Arginosuccinate synthase AL474_16425 PF02705 K+ potassium transporter AL474_16430 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL474_16430 PF08521 Two-component sensor kinase N-terminal AL474_16430 PF00512 His Kinase A (phospho-acceptor) domain AL474_16435 PF00486 Transcriptional regulatory protein, C terminal AL474_16435 PF00072 Response regulator receiver domain AL474_16440 PF02472 Biopolymer transport protein ExbD/TolR AL474_16445 PF01618 MotA/TolQ/ExbB proton channel family AL474_16460 PF00216 Bacterial DNA-binding protein AL474_16465 PF13640 2OG-Fe(II) oxygenase superfamily AL474_16465 PF18331 PKHD-type hydroxylase C-terminal domain AL474_16470 PF01053 Cys/Met metabolism PLP-dependent enzyme AL474_16475 PF08032 RNA 2'-O ribose methyltransferase substrate binding AL474_16475 PF00588 SpoU rRNA Methylase family AL474_16480 PF00575 S1 RNA binding domain AL474_16480 PF00773 RNB domain AL474_16480 PF08206 Ribonuclease B OB domain AL474_16480 PF17876 Cold shock domain AL474_16480 PF08461 Ribonuclease R winged-helix domain AL474_16500 PF13673 Acetyltransferase (GNAT) domain AL474_16505 PF03547 Membrane transport protein AL474_16510 PF04143 Sulphur transport AL474_16515 PF01645 Conserved region in glutamate synthase AL474_16525 PF13396 Phospholipase_D-nuclease N-terminal AL474_16525 PF13091 PLD-like domain AL474_16535 PF10017 Histidine-specific methyltransferase, SAM-dependent AL474_16570 PF00072 Response regulator receiver domain AL474_16575 PF00990 Diguanylate cyclase, GGDEF domain AL474_16605 PF03466 LysR substrate binding domain AL474_16605 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_16615 PF00890 FAD binding domain AL474_16635 PF00166 Chaperonin 10 Kd subunit AL474_16640 PF00118 TCP-1/cpn60 chaperonin family AL474_16650 PF03631 Virulence factor BrkB AL474_16655 PF01219 Prokaryotic diacylglycerol kinase AL474_16660 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL474_16665 PF00215 Orotidine 5'-phosphate decarboxylase / HUMPS family AL474_16670 PF02464 Competence-damaged protein AL474_16670 PF00994 Probable molybdopterin binding domain AL474_16670 PF18146 Damage-inducible protein CinA KH domain AL474_16675 PF04608 Phosphatidylglycerophosphatase A AL474_16680 PF00586 AIR synthase related protein, N-terminal domain AL474_16680 PF02769 AIR synthase related protein, C-terminal domain AL474_16685 PF01029 NusB family AL474_16690 PF00885 6,7-dimethyl-8-ribityllumazine synthase AL474_16695 PF00925 GTP cyclohydrolase II AL474_16695 PF00926 3,4-dihydroxy-2-butanone 4-phosphate synthase AL474_16730 PF00528 Binding-protein-dependent transport system inner membrane component AL474_16735 PF00528 Binding-protein-dependent transport system inner membrane component AL474_16750 PF00448 SRP54-type protein, GTPase domain AL474_16750 PF02881 SRP54-type protein, helical bundle domain AL474_16760 PF01467 Cytidylyltransferase-like AL474_16765 PF00037 4Fe-4S binding domain AL474_16770 PF03594 Benzoate membrane transport protein AL474_16785 PF01022 Bacterial regulatory protein, arsR family AL474_16800 PF03466 LysR substrate binding domain AL474_16800 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_16815 PF00005 ABC transporter AL474_16815 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL474_16820 PF00528 Binding-protein-dependent transport system inner membrane component AL474_16825 PF00528 Binding-protein-dependent transport system inner membrane component AL474_16835 PF01515 Phosphate acetyl/butaryl transferase AL474_16835 PF03949 Malic enzyme, NAD binding domain AL474_16835 PF00390 Malic enzyme, N-terminal domain AL474_16840 PF02668 Taurine catabolism dioxygenase TauD, TfdA family AL474_16845 PF03401 Tripartite tricarboxylate transporter family receptor AL474_16850 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL474_16850 PF00205 Thiamine pyrophosphate enzyme, central domain AL474_16850 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL474_16855 PF07729 FCD domain AL474_16855 PF00392 Bacterial regulatory proteins, gntR family AL474_16895 PF03466 LysR substrate binding domain AL474_16895 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_16910 PF04377 Arginine-tRNA-protein transferase, C terminus AL474_16910 PF04376 Arginine-tRNA-protein transferase, N terminus AL474_16915 PF01180 Dihydroorotate dehydrogenase AL474_16925 PF03401 Tripartite tricarboxylate transporter family receptor AL474_16930 PF18807 Tripartite Tc toxins repeat AL474_16930 PF05785 Rho-activating domain of cytotoxic necrotizing factor AL474_16935 PF01614 Bacterial transcriptional regulator AL474_16935 PF09339 IclR helix-turn-helix domain AL474_16940 PF02464 Competence-damaged protein AL474_16940 PF18146 Damage-inducible protein CinA KH domain AL474_16940 PF00994 Probable molybdopterin binding domain AL474_16960 PF00271 Helicase conserved C-terminal domain AL474_16960 PF00270 DEAD/DEAH box helicase AL474_16975 PF01063 Amino-transferase class IV AL474_16990 PF00561 alpha/beta hydrolase fold AL474_16995 PF13181 Tetratricopeptide repeat AL474_16995 PF01435 Peptidase family M48 AL474_17000 PF00483 Nucleotidyl transferase AL474_17010 PF13609 Gram-negative porin AL474_17035 PF05195 Aminopeptidase P, N-terminal domain AL474_17035 PF00557 Metallopeptidase family M24 AL474_17050 PF01207 Dihydrouridine synthase (Dus) AL474_17055 PF02954 Bacterial regulatory protein, Fis family AL474_17060 PF01808 AICARFT/IMPCHase bienzyme AL474_17060 PF02142 MGS-like domain AL474_17065 PF02075 Crossover junction endodeoxyribonuclease RuvC AL474_17070 PF01330 RuvA N terminal domain AL474_17070 PF07499 RuvA, C-terminal domain AL474_17075 PF01370 NAD dependent epimerase/dehydratase family AL474_17080 PF00291 Pyridoxal-phosphate dependent enzyme AL474_17085 PF05496 Holliday junction DNA helicase RuvB P-loop domain AL474_17085 PF17864 RuvB AAA lid domain AL474_17085 PF05491 RuvB C-terminal winged helix domain AL474_17090 PF00270 DEAD/DEAH box helicase AL474_17090 PF16124 RecQ zinc-binding AL474_17090 PF09382 RQC domain AL474_17090 PF00570 HRDC domain AL474_17090 PF00271 Helicase conserved C-terminal domain AL474_17105 PF00484 Carbonic anhydrase AL474_17110 PF01425 Amidase AL474_17115 PF13458 Periplasmic binding protein AL474_17120 PF02653 Branched-chain amino acid transport system / permease component AL474_17125 PF02653 Branched-chain amino acid transport system / permease component AL474_17130 PF00005 ABC transporter AL474_17130 PF12399 Branched-chain amino acid ATP-binding cassette transporter AL474_17135 PF00005 ABC transporter AL474_17140 PF03460 Nitrite/Sulfite reductase ferredoxin-like half domain AL474_17140 PF01077 Nitrite and sulphite reductase 4Fe-4S domain AL474_17150 PF03180 NLPA lipoprotein AL474_17290 PF06791 Prophage tail length tape measure protein AL474_17355 PF02586 SOS response associated peptidase (SRAP) AL474_17365 PF00072 Response regulator receiver domain AL474_17365 PF00486 Transcriptional regulatory protein, C terminal AL474_17370 PF00293 NUDIX domain AL474_17375 PF04073 Aminoacyl-tRNA editing domain AL474_17375 PF00587 tRNA synthetase class II core domain (G, H, P, S and T) AL474_17375 PF03129 Anticodon binding domain AL474_17380 PF03061 Thioesterase superfamily AL474_17385 PF01618 MotA/TolQ/ExbB proton channel family AL474_17390 PF02472 Biopolymer transport protein ExbD/TolR AL474_17400 PF07676 WD40-like Beta Propeller Repeat AL474_17400 PF04052 TolB amino-terminal domain AL474_17405 PF00691 OmpA family AL474_17415 PF01032 FecCD transport family AL474_17420 PF00005 ABC transporter AL474_17430 PF03401 Tripartite tricarboxylate transporter family receptor AL474_17450 PF07670 Nucleoside recognition AL474_17455 PF00224 Pyruvate kinase, barrel domain AL474_17455 PF02887 Pyruvate kinase, alpha/beta domain AL474_17460 PF02595 Glycerate kinase family AL474_17465 PF00398 Ribosomal RNA adenine dimethylase AL474_17470 PF09312 SurA N-terminal domain AL474_17470 PF00639 PPIC-type PPIASE domain AL474_17475 PF04453 LPS transport system D AL474_17480 PF01636 Phosphotransferase enzyme family AL474_17485 PF00483 Nucleotidyl transferase AL474_17495 PF01329 Pterin 4 alpha carbinolamine dehydratase AL474_17520 PF00202 Aminotransferase class-III AL474_17525 PF01425 Amidase AL474_17530 PF00005 ABC transporter AL474_17530 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL474_17535 PF00528 Binding-protein-dependent transport system inner membrane component AL474_17540 PF00528 Binding-protein-dependent transport system inner membrane component AL474_17545 PF00496 Bacterial extracellular solute-binding proteins, family 5 Middle AL474_17565 PF00278 Pyridoxal-dependent decarboxylase, C-terminal sheet domain AL474_17570 PF16653 Saccharopine dehydrogenase C-terminal domain AL474_17570 PF03435 Saccharopine dehydrogenase NADP binding domain AL474_17585 PF04264 YceI-like domain AL474_17590 PF00593 TonB dependent receptor AL474_17590 PF07715 TonB-dependent Receptor Plug Domain AL474_17595 PF04773 FecR protein AL474_17595 PF16220 Domain of unknown function (DUF4880) AL474_17635 PF00696 Amino acid kinase family AL474_17635 PF01472 PUA domain AL474_17640 PF01926 50S ribosome-binding GTPase AL474_17640 PF01018 GTP1/OBG AL474_17645 PF01016 Ribosomal L27 protein AL474_17650 PF00829 Ribosomal prokaryotic L21 protein AL474_17660 PF00348 Polyprenyl synthetase AL474_17670 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_17670 PF03466 LysR substrate binding domain AL474_17675 PF05378 Hydantoinase/oxoprolinase N-terminal region AL474_17675 PF01968 Hydantoinase/oxoprolinase AL474_17680 PF02538 Hydantoinase B/oxoprolinase AL474_17685 PF01266 FAD dependent oxidoreductase AL474_17695 PF00171 Aldehyde dehydrogenase family AL474_17700 PF02794 RTX toxin acyltransferase family AL474_17715 PF00005 ABC transporter AL474_17715 PF00664 ABC transporter transmembrane region AL474_17715 PF03412 Peptidase C39 family AL474_17720 PF13533 Biotin-lipoyl like AL474_17725 PF02321 Outer membrane efflux protein AL474_17735 PF00497 Bacterial extracellular solute-binding proteins, family 3 AL474_17745 PF00528 Binding-protein-dependent transport system inner membrane component AL474_17750 PF00005 ABC transporter AL474_17755 PF01063 Amino-transferase class IV AL474_17775 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL474_17775 PF00205 Thiamine pyrophosphate enzyme, central domain AL474_17775 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL474_17780 PF07729 FCD domain AL474_17780 PF00392 Bacterial regulatory proteins, gntR family AL474_17790 PF07729 FCD domain AL474_17790 PF00392 Bacterial regulatory proteins, gntR family AL474_17795 PF00107 Zinc-binding dehydrogenase AL474_17795 PF08240 Alcohol dehydrogenase GroES-like domain AL474_17800 PF13193 AMP-binding enzyme C-terminal domain AL474_17800 PF00501 AMP-binding enzyme AL474_17810 PF00528 Binding-protein-dependent transport system inner membrane component AL474_17815 PF00005 ABC transporter AL474_17820 PF09084 NMT1/THI5 like AL474_17830 PF00205 Thiamine pyrophosphate enzyme, central domain AL474_17830 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL474_17830 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL474_17850 PF01433 Peptidase family M1 domain AL474_17850 PF17432 Domain of unknown function (DUF3458_C) ARM repeats AL474_17850 PF11940 Domain of unknown function (DUF3458) Ig-like fold AL474_17855 PF00316 Fructose-1-6-bisphosphatase, N-terminal domain AL474_17865 PF02542 YgbB family AL474_17870 PF01128 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase AL474_17875 PF00271 Helicase conserved C-terminal domain AL474_17875 PF00270 DEAD/DEAH box helicase AL474_17875 PF02559 CarD-like/TRCF domain AL474_17875 PF17757 UvrB interaction domain AL474_17875 PF03461 TRCF domain AL474_17885 PF03466 LysR substrate binding domain AL474_17885 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_17890 PF03401 Tripartite tricarboxylate transporter family receptor AL474_17895 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL474_17895 PF00205 Thiamine pyrophosphate enzyme, central domain AL474_17895 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL474_17910 PF00593 TonB dependent receptor AL474_17910 PF07715 TonB-dependent Receptor Plug Domain AL474_17915 PF07715 TonB-dependent Receptor Plug Domain AL474_17915 PF00593 TonB dependent receptor AL474_17925 PF00361 Proton-conducting membrane transporter AL474_17930 PF01059 NADH-ubiquinone oxidoreductase chain 4, amino terminus AL474_17930 PF00361 Proton-conducting membrane transporter AL474_17935 PF00361 Proton-conducting membrane transporter AL474_17935 PF00662 NADH-Ubiquinone oxidoreductase (complex I), chain 5 N-terminus AL474_17940 PF00420 NADH-ubiquinone/plastoquinone oxidoreductase chain 4L AL474_17945 PF00499 NADH-ubiquinone/plastoquinone oxidoreductase chain 6 AL474_17950 PF12838 4Fe-4S dicluster domain AL474_17955 PF00146 NADH dehydrogenase AL474_17960 PF09326 NADH-ubiquinone oxidoreductase subunit G, C-terminal AL474_17960 PF00384 Molybdopterin oxidoreductase AL474_17960 PF10588 NADH-ubiquinone oxidoreductase-G iron-sulfur binding region AL474_17965 PF10531 SLBB domain AL474_17965 PF10589 NADH-ubiquinone oxidoreductase-F iron-sulfur binding region AL474_17965 PF01512 Respiratory-chain NADH dehydrogenase 51 Kd subunit AL474_17975 PF00346 Respiratory-chain NADH dehydrogenase, 49 Kd subunit AL474_17980 PF00329 Respiratory-chain NADH dehydrogenase, 30 Kd subunit AL474_17985 PF01058 NADH ubiquinone oxidoreductase, 20 Kd subunit AL474_17990 PF00507 NADH-ubiquinone/plastoquinone oxidoreductase, chain 3 AL474_17995 PF13609 Gram-negative porin AL474_18020 PF01569 PAP2 superfamily AL474_18030 PF00781 Diacylglycerol kinase catalytic domain AL474_18035 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_18035 PF03466 LysR substrate binding domain AL474_18040 PF02028 BCCT, betaine/carnitine/choline family transporter AL474_18050 PF01638 HxlR-like helix-turn-helix AL474_18055 PF16576 Barrel-sandwich domain of CusB or HlyD membrane-fusion AL474_18060 PF00873 AcrB/AcrD/AcrF family AL474_18065 PF02321 Outer membrane efflux protein AL474_18075 PF00127 Copper binding proteins, plastocyanin/azurin family AL474_18085 PF05378 Hydantoinase/oxoprolinase N-terminal region AL474_18085 PF01968 Hydantoinase/oxoprolinase AL474_18095 PF01266 FAD dependent oxidoreductase AL474_18100 PF03401 Tripartite tricarboxylate transporter family receptor AL474_18115 PF04952 Succinylglutamate desuccinylase / Aspartoacylase family AL474_18120 PF01053 Cys/Met metabolism PLP-dependent enzyme AL474_18125 PF03466 LysR substrate binding domain AL474_18125 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_18140 PF03401 Tripartite tricarboxylate transporter family receptor AL474_18160 PF03401 Tripartite tricarboxylate transporter family receptor AL474_18165 PF07476 Methylaspartate ammonia-lyase C-terminus AL474_18165 PF05034 Methylaspartate ammonia-lyase N-terminus AL474_18175 PF02028 BCCT, betaine/carnitine/choline family transporter AL474_18185 PF03840 Preprotein translocase SecG subunit AL474_18190 PF00121 Triosephosphate isomerase AL474_18195 PF08659 KR domain AL474_18195 PF02801 Beta-ketoacyl synthase, C-terminal domain AL474_18195 PF14765 Polyketide synthase dehydratase AL474_18195 PF00109 Beta-ketoacyl synthase, N-terminal domain AL474_18195 PF16197 Ketoacyl-synthetase C-terminal extension AL474_18195 PF08240 Alcohol dehydrogenase GroES-like domain AL474_18195 PF08990 Erythronolide synthase docking AL474_18195 PF00698 Acyl transferase domain AL474_18195 PF00550 Phosphopantetheine attachment site AL474_18210 PF00291 Pyridoxal-phosphate dependent enzyme AL474_18210 PF13291 ACT domain AL474_18225 PF01138 3' exoribonuclease family, domain 1 AL474_18225 PF00013 KH domain AL474_18225 PF03725 3' exoribonuclease family, domain 2 AL474_18225 PF00575 S1 RNA binding domain AL474_18225 PF03726 Polyribonucleotide nucleotidyltransferase, RNA binding domain AL474_18230 PF00312 Ribosomal protein S15 AL474_18240 PF01066 CDP-alcohol phosphatidyltransferase AL474_18245 PF01450 Acetohydroxy acid isomeroreductase, catalytic domain AL474_18245 PF07991 Acetohydroxy acid isomeroreductase, NADPH-binding domain AL474_18250 PF10369 Small subunit of acetolactate synthase AL474_18255 PF02775 Thiamine pyrophosphate enzyme, C-terminal TPP binding domain AL474_18255 PF02776 Thiamine pyrophosphate enzyme, N-terminal TPP binding domain AL474_18255 PF00205 Thiamine pyrophosphate enzyme, central domain AL474_18270 PF00005 ABC transporter AL474_18270 PF00664 ABC transporter transmembrane region AL474_18275 PF05724 Thiopurine S-methyltransferase (TPMT) AL474_18310 PF01966 HD domain AL474_18325 PF02436 Conserved carboxylase domain AL474_18325 PF00682 HMGL-like AL474_18325 PF00364 Biotin-requiring enzyme AL474_18345 PF00392 Bacterial regulatory proteins, gntR family AL474_18345 PF07702 UTRA domain AL474_18350 PF02786 Carbamoyl-phosphate synthase L chain, ATP binding domain AL474_18350 PF00289 Biotin carboxylase, N-terminal domain AL474_18350 PF02785 Biotin carboxylase C-terminal domain AL474_18400 PF00664 ABC transporter transmembrane region AL474_18400 PF00005 ABC transporter AL474_18405 PF00248 Aldo/keto reductase family AL474_18410 PF00248 Aldo/keto reductase family AL474_18425 PF00149 Calcineurin-like phosphoesterase AL474_18430 PF00912 Transglycosylase AL474_18430 PF00905 Penicillin binding protein transpeptidase domain AL474_18430 PF17092 Penicillin-binding protein OB-like domain AL474_18435 PF00326 Prolyl oligopeptidase family AL474_18445 PF11798 IMS family HHH motif AL474_18445 PF11799 impB/mucB/samB family C-terminal domain AL474_18445 PF00817 impB/mucB/samB family AL474_18455 PF03401 Tripartite tricarboxylate transporter family receptor AL474_18460 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_18460 PF03466 LysR substrate binding domain AL474_18485 PF07690 Major Facilitator Superfamily AL474_18490 PF13419 Haloacid dehalogenase-like hydrolase AL474_18500 PF00691 OmpA family AL474_18505 PF03989 DNA gyrase C-terminal domain, beta-propeller AL474_18505 PF00521 DNA gyrase/topoisomerase IV, subunit A AL474_18510 PF00266 Aminotransferase class-V AL474_18515 PF01842 ACT domain AL474_18515 PF00800 Prephenate dehydratase AL474_18515 PF01817 Chorismate mutase type II AL474_18520 PF02153 Prephenate dehydrogenase AL474_18525 PF00275 EPSP synthase (3-phosphoshikimate 1-carboxyvinyltransferase) AL474_18530 PF02224 Cytidylate kinase AL474_18535 PF00575 S1 RNA binding domain AL474_18540 PF00216 Bacterial DNA-binding protein AL474_18550 PF18073 Rubredoxin metal binding domain AL474_18555 PF00294 pfkB family carbohydrate kinase AL474_18560 PF01370 NAD dependent epimerase/dehydratase family AL474_18575 PF00291 Pyridoxal-phosphate dependent enzyme AL474_18580 PF13406 Transglycosylase SLT domain AL474_18585 PF00850 Histone deacetylase domain AL474_18590 PF01012 Electron transfer flavoprotein domain AL474_18595 PF01012 Electron transfer flavoprotein domain AL474_18595 PF00766 Electron transfer flavoprotein FAD-binding domain AL474_18600 PF12806 Acetyl-CoA dehydrogenase C-terminal like AL474_18600 PF00441 Acyl-CoA dehydrogenase, C-terminal domain AL474_18600 PF02771 Acyl-CoA dehydrogenase, N-terminal domain AL474_18600 PF02770 Acyl-CoA dehydrogenase, middle domain AL474_18605 PF00578 AhpC/TSA family AL474_18605 PF10417 C-terminal domain of 1-Cys peroxiredoxin AL474_18630 PF12857 TOBE-like domain AL474_18630 PF17850 CysA C-terminal regulatory domain AL474_18630 PF00005 ABC transporter AL474_18640 PF01507 Phosphoadenosine phosphosulfate reductase family AL474_18650 PF04055 Radical SAM superfamily AL474_18665 PF01245 Ribosomal protein L19 AL474_18670 PF00293 NUDIX domain AL474_18680 PF00248 Aldo/keto reductase family AL474_18695 PF04345 Chorismate lyase AL474_18700 PF01479 S4 domain AL474_18700 PF00849 RNA pseudouridylate synthase AL474_18705 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_18705 PF03466 LysR substrate binding domain AL474_18715 PF00873 AcrB/AcrD/AcrF family AL474_18730 PF02630 SCO1/SenC AL474_18735 PF01432 Peptidase family M3 AL474_18740 PF02882 Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain AL474_18740 PF00763 Tetrahydrofolate dehydrogenase/cyclohydrolase, catalytic domain AL474_18745 PF00196 Bacterial regulatory proteins, luxR family AL474_18745 PF00072 Response regulator receiver domain AL474_18750 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL474_18750 PF00989 PAS fold AL474_18750 PF00512 His Kinase A (phospho-acceptor) domain AL474_18755 PF17831 Pyruvate dehydrogenase E1 component middle domain AL474_18755 PF00456 Transketolase, thiamine diphosphate binding domain AL474_18765 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL474_18765 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL474_18770 PF00700 Bacterial flagellin C-terminal helical region AL474_18770 PF00669 Bacterial flagellin N-terminal helical region AL474_18780 PF04452 RNA methyltransferase AL474_18785 PF00456 Transketolase, thiamine diphosphate binding domain AL474_18785 PF02780 Transketolase, C-terminal domain AL474_18785 PF02779 Transketolase, pyrimidine binding domain AL474_18790 PF00044 Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain AL474_18790 PF02800 Glyceraldehyde 3-phosphate dehydrogenase, C-terminal domain AL474_18795 PF00162 Phosphoglycerate kinase AL474_18805 PF00871 Acetokinase family AL474_18810 PF01515 Phosphate acetyl/butaryl transferase AL474_18815 PF11339 Protein of unknown function (DUF3141) AL474_18820 PF14834 Glutathione S-transferase, C-terminal domain AL474_18820 PF02798 Glutathione S-transferase, N-terminal domain AL474_18865 PF00994 Probable molybdopterin binding domain AL474_18875 PF08525 Opacity-associated protein A N-terminal motif AL474_18875 PF01551 Peptidase family M23 AL474_18875 PF01476 LysM domain AL474_18885 PF01176 Translation initiation factor 1A / IF-1 AL474_18895 PF04545 Sigma-70, region 4 AL474_18895 PF04542 Sigma-70 region 2 AL474_18895 PF04539 Sigma-70 region 3 AL474_18900 PF05247 Flagellar transcriptional activator (FlhD) AL474_18910 PF01618 MotA/TolQ/ExbB proton channel family AL474_18915 PF13677 Membrane MotB of proton-channel complex MotA/MotB AL474_18915 PF00691 OmpA family AL474_18920 PF00072 Response regulator receiver domain AL474_18925 PF02518 Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase AL474_18925 PF01627 Hpt domain AL474_18925 PF02895 Signal transducing histidine kinase, homodimeric domain AL474_18925 PF09078 CheY binding AL474_18925 PF01584 CheW-like domain AL474_18930 PF01584 CheW-like domain AL474_18935 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL474_18935 PF00672 HAMP domain AL474_18935 PF02203 Tar ligand binding domain homologue AL474_18945 PF01339 CheB methylesterase AL474_18945 PF00072 Response regulator receiver domain AL474_18950 PF00072 Response regulator receiver domain AL474_18955 PF04344 Chemotaxis phosphatase, CheZ AL474_18980 PF00248 Aldo/keto reductase family AL474_18985 PF00795 Carbon-nitrogen hydrolase AL474_18990 PF00571 CBS domain AL474_18990 PF03471 Transporter associated domain AL474_18995 PF02130 Uncharacterized protein family UPF0054 AL474_19000 PF02562 PhoH-like protein AL474_19005 PF01938 TRAM domain AL474_19005 PF00919 Uncharacterized protein family UPF0004 AL474_19005 PF04055 Radical SAM superfamily AL474_19020 PF07549 SecD/SecF GG Motif AL474_19020 PF02355 Protein export membrane protein AL474_19025 PF02355 Protein export membrane protein AL474_19025 PF13721 SecD export protein N-terminal TM region AL474_19025 PF07549 SecD/SecF GG Motif AL474_19030 PF02699 Preprotein translocase subunit AL474_19035 PF01702 Queuine tRNA-ribosyltransferase AL474_19040 PF02547 Queuosine biosynthesis protein AL474_19045 PF02113 D-Ala-D-Ala carboxypeptidase 3 (S13) family AL474_19060 PF03797 Autotransporter beta-domain AL474_19060 PF03212 Pertactin AL474_19090 PF01977 3-octaprenyl-4-hydroxybenzoate carboxy-lyase AL474_19095 PF01464 Transglycosylase SLT domain AL474_19095 PF11873 Membrane-bound lytic murein transglycosylase C, N-terminal domain AL474_19100 PF00155 Aminotransferase class I and II AL474_19110 PF00390 Malic enzyme, N-terminal domain AL474_19110 PF01515 Phosphate acetyl/butaryl transferase AL474_19110 PF03949 Malic enzyme, NAD binding domain AL474_19120 PF01337 Barstar (barnase inhibitor) AL474_19135 PF00005 ABC transporter AL474_19140 PF00528 Binding-protein-dependent transport system inner membrane component AL474_19150 PF00528 Binding-protein-dependent transport system inner membrane component AL474_19155 PF12849 PBP superfamily domain AL474_19160 PF02503 Polyphosphate kinase middle domain AL474_19160 PF13090 Polyphosphate kinase C-terminal domain 2 AL474_19160 PF17941 Polyphosphate kinase C-terminal domain 1 AL474_19160 PF13089 Polyphosphate kinase N-terminal domain AL474_19165 PF02541 Ppx/GppA phosphatase family AL474_19175 PF00408 Phosphoglucomutase/phosphomannomutase, C-terminal domain AL474_19175 PF02878 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain I AL474_19175 PF02880 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain III AL474_19175 PF02879 Phosphoglucomutase/phosphomannomutase, alpha/beta/alpha domain II AL474_19180 PF00809 Pterin binding enzyme AL474_19185 PF01434 Peptidase family M41 AL474_19185 PF06480 FtsH Extracellular AL474_19185 PF17862 AAA+ lid domain AL474_19185 PF00004 ATPase family associated with various cellular activities (AAA) AL474_19190 PF01728 FtsJ-like methyltransferase AL474_19195 PF01985 CRS1 / YhbY (CRM) domain AL474_19215 PF01636 Phosphotransferase enzyme family AL474_19220 PF01207 Dihydrouridine synthase (Dus) AL474_19235 PF03631 Virulence factor BrkB AL474_19245 PF02696 Uncharacterized ACR, YdiU/UPF0061 family AL474_19250 PF00072 Response regulator receiver domain AL474_19250 PF00486 Transcriptional regulatory protein, C terminal AL474_19270 PF12399 Branched-chain amino acid ATP-binding cassette transporter AL474_19270 PF00005 ABC transporter AL474_19290 PF00005 ABC transporter AL474_19295 PF00501 AMP-binding enzyme AL474_19300 PF17932 Tetracyclin repressor-like, C-terminal domain AL474_19300 PF00440 Bacterial regulatory proteins, tetR family AL474_19310 PF01336 OB-fold nucleic acid binding domain AL474_19310 PF00152 tRNA synthetases class II (D, K and N) AL474_19325 PF01368 DHH family AL474_19325 PF02272 DHHA1 domain AL474_19325 PF17768 RecJ OB domain AL474_19335 PF02687 FtsX-like permease family AL474_19335 PF12704 MacB-like periplasmic core domain AL474_19340 PF00005 ABC transporter AL474_19345 PF01026 TatD related DNase AL474_19380 PF02811 PHP domain AL474_19385 PF01272 Transcription elongation factor, GreA/GreB, C-term AL474_19385 PF03449 Transcription elongation factor, N-terminal AL474_19395 PF16970 Type-1 fimbrial protein, A AL474_19400 PF00390 Malic enzyme, N-terminal domain AL474_19400 PF03949 Malic enzyme, NAD binding domain AL474_19400 PF01515 Phosphate acetyl/butaryl transferase AL474_19405 PF17831 Pyruvate dehydrogenase E1 component middle domain AL474_19405 PF00456 Transketolase, thiamine diphosphate binding domain AL474_19410 PF01037 Lrp/AsnC ligand binding domain AL474_19425 PF16078 2-oxoglutarate dehydrogenase N-terminus AL474_19425 PF00676 Dehydrogenase E1 component AL474_19425 PF16870 2-oxoglutarate dehydrogenase C-terminal AL474_19425 PF02779 Transketolase, pyrimidine binding domain AL474_19430 PF00198 2-oxoacid dehydrogenases acyltransferase (catalytic domain) AL474_19430 PF00364 Biotin-requiring enzyme AL474_19430 PF02817 e3 binding domain AL474_19435 PF02852 Pyridine nucleotide-disulphide oxidoreductase, dimerisation domain AL474_19435 PF07992 Pyridine nucleotide-disulphide oxidoreductase AL474_19440 PF03969 AFG1-like ATPase AL474_19450 PF03466 LysR substrate binding domain AL474_19450 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_19460 PF03401 Tripartite tricarboxylate transporter family receptor AL474_19480 PF00579 tRNA synthetases class I (W and Y) AL474_19485 PF17674 HHH domain AL474_19485 PF00575 S1 RNA binding domain AL474_19485 PF16921 Tex protein YqgF-like domain AL474_19485 PF09371 Tex-like protein N-terminal domain AL474_19490 PF13307 Helicase C-terminal domain AL474_19490 PF04851 Type III restriction enzyme, res subunit AL474_19495 PF13525 Outer membrane lipoprotein AL474_19500 PF01479 S4 domain AL474_19500 PF00849 RNA pseudouridylate synthase AL474_19510 PF07167 Poly-beta-hydroxybutyrate polymerase (PhaC) N-terminus AL474_19515 PF00106 short chain dehydrogenase AL474_19520 PF07879 PHB/PHA accumulation regulator DNA-binding domain AL474_19520 PF05233 PHB accumulation regulatory domain AL474_19525 PF10634 Fe2+ transport protein AL474_19535 PF03239 Iron permease FTR1 family AL474_19545 PF02567 Phenazine biosynthesis-like protein AL474_19565 PF03401 Tripartite tricarboxylate transporter family receptor AL474_19570 PF02746 Mandelate racemase / muconate lactonizing enzyme, N-terminal domain AL474_19570 PF13378 Enolase C-terminal domain-like AL474_19575 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_19575 PF03466 LysR substrate binding domain AL474_19585 PF07690 Major Facilitator Superfamily AL474_19600 PF02016 LD-carboxypeptidase N-terminal domain AL474_19600 PF17676 LD-carboxypeptidase C-terminal domain AL474_19610 PF03466 LysR substrate binding domain AL474_19610 PF00126 Bacterial regulatory helix-turn-helix protein, lysR family AL474_19615 PF14833 NAD-binding of NADP-dependent 3-hydroxyisobutyrate dehydrogenase AL474_19615 PF03446 NAD binding domain of 6-phosphogluconate dehydrogenase AL474_19620 PF03401 Tripartite tricarboxylate transporter family receptor AL474_19680 PF00291 Pyridoxal-phosphate dependent enzyme AL474_19790 PF16970 Type-1 fimbrial protein, A AL474_19825 PF00535 Glycosyl transferase family 2 AL474_19835 PF02203 Tar ligand binding domain homologue AL474_19835 PF00015 Methyl-accepting chemotaxis protein (MCP) signalling domain AL474_19835 PF00672 HAMP domain AL474_19865 PF00437 Type II/IV secretion system protein AL474_19890 PF00005 ABC transporter AL474_19890 PF17912 MalK OB fold domain AL474_20075 PF00005 ABC transporter AL474_20075 PF08352 Oligopeptide/dipeptide transporter, C-terminal region AL474_20090 PF00941 FAD binding domain in molybdopterin dehydrogenase AL474_20090 PF03450 CO dehydrogenase flavoprotein C-terminal domain AL474_20155 PF01230 HIT domain AL474_20160 PF13627 Prokaryotic lipoprotein-attachment site AL474_20220 PF00356 Bacterial regulatory proteins, lacI family AL474_20260 PF02021 Uncharacterised protein family UPF0102 AL474_20345 PF03401 Tripartite tricarboxylate transporter family receptor AL474_20395 PF10531 SLBB domain AL474_20400 PF03591 AzlC protein AL474_20425 PF03772 Competence protein AL474_20425 PF13567 Domain of unknown function (DUF4131) AL474_20425 PF00753 Metallo-beta-lactamase superfamily