AL474_00040	SM00382	ATPases associated with a variety of cellular activities
AL474_00055	SM00062	Bacterial periplasmic substrate-binding proteins
AL474_00125	SM00100	Cyclic nucleotide-monophosphate binding domain
AL474_00125	SM00419	helix_turn_helix, cAMP Regulatory protein
AL474_00130	SM00382	ATPases associated with a variety of cellular activities
AL474_00130	SM01086	C-terminal, D2-small domain, of ClpB protein
AL474_00145	SM00869	Autotransporter beta-domain
AL474_00210	SM00382	ATPases associated with a variety of cellular activities
AL474_00245	SM01005	Alanine racemase, C-terminal domain
AL474_00270	SM00327	von Willebrand factor (vWF) type A domain
AL474_00275	SM00382	ATPases associated with a variety of cellular activities
AL474_00350	SM00833	Cobalamin synthesis protein cobW C-terminal domain
AL474_00385	SM00316	Ribosomal protein S1-like RNA-binding domain
AL474_00425	SM00279	Helix-hairpin-helix class 2 (Pol1 family) motifs
AL474_00425	SM00474	3'-5' exonuclease
AL474_00425	SM00475	5'-3' exonuclease
AL474_00425	SM00482	DNA polymerase A domain
AL474_00465	SM00357	Cold shock protein domain
AL474_00465	SM00382	ATPases associated with a variety of cellular activities
AL474_00465	SM00959	Rho termination factor, N-terminal domain
AL474_00475	SM00387	Histidine kinase-like ATPases
AL474_00475	SM00433	TopoisomeraseII
AL474_00485	SM00434	DNA Topoisomerase IV
AL474_00520	SM00382	ATPases associated with a variety of cellular activities
AL474_00525	SM00382	ATPases associated with a variety of cellular activities
AL474_00575	SM00382	ATPases associated with a variety of cellular activities
AL474_00610	SM00953	AL474_00610
AL474_00745	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL474_00785	SM00642	Alpha-amylase domain
AL474_00790	SM00642	Alpha-amylase domain
AL474_00795	SM00642	Alpha-amylase domain
AL474_00845	SM00155	Phospholipase D. Active site motifs.
AL474_00865	SM00869	Autotransporter beta-domain
AL474_00890	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL474_00890	SM00895	AL474_00890
AL474_00895	SM00881	CoA binding domain
AL474_00920	SM00354	helix_turn _helix lactose operon repressor
AL474_00940	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AL474_00955	SM00382	ATPases associated with a variety of cellular activities
AL474_00965	SM00062	Bacterial periplasmic substrate-binding proteins
AL474_01000	SM00858	AL474_01000
AL474_01045	SM00047	Lysozyme subfamily 2
AL474_01060	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL474_01060	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL474_01065	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL474_01065	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL474_01070	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
AL474_01070	SM00091	PAS domain
AL474_01070	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL474_01070	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL474_01135	SM00382	ATPases associated with a variety of cellular activities
AL474_01235	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AL474_01280	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AL474_01290	SM00935	Outer membrane protein (OmpH-like)
AL474_01350	SM00244	prohibitin homologues
AL474_01355	SM00267	diguanylate cyclase
AL474_01420	SM01097	Carbamoyl-phosphate synthase small chain, CPSase domain
AL474_01425	SM00851	MGS-like domain
AL474_01425	SM01096	Carbamoyl-phosphate synthetase large chain, oligomerisation domain
AL474_01435	SM00855	Phosphoglycerate mutase family
AL474_01445	SM00382	ATPases associated with a variety of cellular activities
AL474_01465	SM00052	Putative diguanylate phosphodiesterase
AL474_01485	SM00852	Probable molybdopterin binding domain
AL474_01525	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AL474_01560	SM00382	ATPases associated with a variety of cellular activities
AL474_01580	SM01329	AL474_01580
AL474_01585	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AL474_01645	SM00644	AL474_01645
AL474_01680	SM00827	Acyl transferase domain in polyketide synthase (PKS) enzymes.
AL474_01685	SM00822	AL474_01685
AL474_01695	SM00825	Beta-ketoacyl synthase
AL474_01720	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AL474_01725	SM00838	Elongation factor G C-terminus
AL474_01735	SM00358	Double-stranded RNA binding motif
AL474_01735	SM00535	Ribonuclease III family
AL474_01895	SM00882	Coenzyme A transferase
AL474_01910	SM00382	ATPases associated with a variety of cellular activities
AL474_01965	SM01192	AL474_01965
AL474_01965	SM01193	AL474_01965
AL474_01975	SM00028	Tetratricopeptide repeats
AL474_01975	SM00862	Transcriptional regulatory protein, C terminal
AL474_02030	SM00981	AL474_02030
AL474_02070	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL474_02070	SM00866	AL474_02070
AL474_02155	SM00382	ATPases associated with a variety of cellular activities
AL474_02220	SM00382	ATPases associated with a variety of cellular activities
AL474_02220	SM00487	DEAD-like helicases superfamily
AL474_02220	SM00490	helicase superfamily c-terminal domain
AL474_02220	SM00847	Helicase associated domain (HA2)  Add an annotation
AL474_02230	SM00481	DNA polymerase alpha chain like domain
AL474_02285	SM00382	ATPases associated with a variety of cellular activities
AL474_02305	SM00316	Ribosomal protein S1-like RNA-binding domain
AL474_02345	SM00869	Autotransporter beta-domain
AL474_02375	SM01209	AL474_02375
AL474_02375	SM01210	AL474_02375
AL474_02440	SM00382	ATPases associated with a variety of cellular activities
AL474_02460	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL474_02465	SM01329	AL474_02465
AL474_02485	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL474_02500	SM00829	Enoylreductase
AL474_02515	SM00450	Rhodanese Homology Domain
AL474_02530	SM00382	ATPases associated with a variety of cellular activities
AL474_02575	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL474_02575	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL474_02690	SM00382	ATPases associated with a variety of cellular activities
AL474_02760	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL474_02760	SM00331	Sigma factor PP2C-like phosphatases
AL474_02760	SM01049	AL474_02760
AL474_02770	SM01005	Alanine racemase, C-terminal domain
AL474_02785	SM00155	Phospholipase D. Active site motifs.
AL474_02795	SM00869	Autotransporter beta-domain
AL474_02830	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL474_02875	SM01207	AL474_02875
AL474_02890	SM00257	Lysin motif
AL474_02915	SM00422	helix_turn_helix, mercury resistance
AL474_02955	SM00382	ATPases associated with a variety of cellular activities
AL474_02970	SM00749	bacterial OsmY and nodulation domain
AL474_03030	SM00344	helix_turn_helix ASNC type
AL474_03055	SM00904	Riboflavin kinase
AL474_03085	SM00965	Secretin and TonB N terminus short domain
AL474_03090	SM00382	ATPases associated with a variety of cellular activities
AL474_03125	SM00869	Autotransporter beta-domain
AL474_03140	SM00357	Cold shock protein domain
AL474_03150	SM00357	Cold shock protein domain
AL474_03170	SM00382	ATPases associated with a variety of cellular activities
AL474_03170	SM00994	ClpX C4-type zinc finger
AL474_03170	SM01086	C-terminal, D2-small domain, of ClpB protein
AL474_03175	SM00382	ATPases associated with a variety of cellular activities
AL474_03175	SM00464	Found in ATP-dependent protease La (LON)
AL474_03230	SM00882	Coenzyme A transferase
AL474_03235	SM00882	Coenzyme A transferase
AL474_03275	SM00487	DEAD-like helicases superfamily
AL474_03275	SM00490	helicase superfamily c-terminal domain
AL474_03280	SM00226	Low molecular weight phosphatase family
AL474_03305	SM00271	DnaJ molecular chaperone homology domain
AL474_03360	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL474_03360	SM00866	AL474_03360
AL474_03420	SM00382	ATPases associated with a variety of cellular activities
AL474_03470	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AL474_03520	SM00387	Histidine kinase-like ATPases
AL474_03520	SM00388	His Kinase A (phosphoacceptor) domain
AL474_03540	SM00562	AL474_03540
AL474_03570	SM00564	beta-propeller repeat
AL474_03575	SM00382	ATPases associated with a variety of cellular activities
AL474_03595	SM00244	prohibitin homologues
AL474_03600	SM00244	prohibitin homologues
AL474_03610	SM00788	Adenylosuccinate synthetase
AL474_03625	SM00400	zinc finger
AL474_03625	SM00493	AL474_03625
AL474_03625	SM00766	DNA primase DnaG DnaB-binding
AL474_03670	SM00382	ATPases associated with a variety of cellular activities
AL474_03770	SM00382	ATPases associated with a variety of cellular activities
AL474_03810	SM00342	helix_turn_helix, arabinose operon control protein
AL474_03830	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AL474_03845	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL474_03845	SM00895	AL474_03845
AL474_03865	SM00382	ATPases associated with a variety of cellular activities
AL474_03900	SM00464	Found in ATP-dependent protease La (LON)
AL474_03910	SM00342	helix_turn_helix, arabinose operon control protein
AL474_03920	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
AL474_04010	SM00822	AL474_04010
AL474_04175	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AL474_04175	SM00465	GIY-YIG type nucleases (URI domain)
AL474_04210	SM00862	Transcriptional regulatory protein, C terminal
AL474_04230	SM00382	ATPases associated with a variety of cellular activities
AL474_04270	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL474_04270	SM00895	AL474_04270
AL474_04290	SM00382	ATPases associated with a variety of cellular activities
AL474_04345	SM00411	bacterial (prokaryotic) histone like domain
AL474_04350	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL474_04490	SM00479	AL474_04490
AL474_04550	SM00841	Elongation factor P, C-terminal
AL474_04550	SM01185	AL474_04550
AL474_04580	SM00382	ATPases associated with a variety of cellular activities
AL474_04590	SM00028	Tetratricopeptide repeats
AL474_04620	SM00858	AL474_04620
AL474_04665	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL474_04670	SM00382	ATPases associated with a variety of cellular activities
AL474_04690	SM00318	Staphylococcal nuclease homologues
AL474_04755	SM00421	helix_turn_helix, Lux Regulon
AL474_04760	SM00421	helix_turn_helix, Lux Regulon
AL474_04765	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL474_04780	SM00028	Tetratricopeptide repeats
AL474_04805	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AL474_04835	SM00881	CoA binding domain
AL474_04840	SM00346	helix_turn_helix isocitrate lyase regulation
AL474_04855	SM00382	ATPases associated with a variety of cellular activities
AL474_04970	SM00478	endonuclease III
AL474_04975	SM00840	AL474_04975
AL474_04980	SM00028	Tetratricopeptide repeats
AL474_05000	SM01091	Transporter associated domain
AL474_05020	SM00346	helix_turn_helix isocitrate lyase regulation
AL474_05110	SM00912	haemagglutination activity domain
AL474_05115	SM00421	helix_turn_helix, Lux Regulon
AL474_05115	SM00448	cheY-homologous receiver domain
AL474_05120	SM00062	Bacterial periplasmic substrate-binding proteins
AL474_05120	SM00073	Histidine Phosphotransfer domain
AL474_05120	SM00091	PAS domain
AL474_05120	SM00387	Histidine kinase-like ATPases
AL474_05120	SM00388	His Kinase A (phosphoacceptor) domain
AL474_05120	SM00448	cheY-homologous receiver domain
AL474_05125	SM00052	Putative diguanylate phosphodiesterase
AL474_05160	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL474_05160	SM00895	AL474_05160
AL474_05200	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
AL474_05210	SM00382	ATPases associated with a variety of cellular activities
AL474_05220	SM00062	Bacterial periplasmic substrate-binding proteins
AL474_05220	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AL474_05225	SM00346	helix_turn_helix isocitrate lyase regulation
AL474_05230	SM00248	ankyrin repeats
AL474_05310	SM00382	ATPases associated with a variety of cellular activities
AL474_05315	SM00382	ATPases associated with a variety of cellular activities
AL474_05415	SM00822	AL474_05415
AL474_05430	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AL474_05535	SM00530	Helix-turn-helix XRE-family like proteins 
AL474_05545	SM00421	helix_turn_helix, Lux Regulon
AL474_05545	SM00448	cheY-homologous receiver domain
AL474_05585	SM00028	Tetratricopeptide repeats
AL474_05585	SM00327	von Willebrand factor (vWF) type A domain
AL474_05590	SM00327	von Willebrand factor (vWF) type A domain
AL474_05640	SM00382	ATPases associated with a variety of cellular activities
AL474_05645	SM00382	ATPases associated with a variety of cellular activities
AL474_05695	SM00984	UDP binding domain
AL474_05720	SM00382	ATPases associated with a variety of cellular activities
AL474_05765	SM00487	DEAD-like helicases superfamily
AL474_05765	SM00490	helicase superfamily c-terminal domain
AL474_05810	SM00382	ATPases associated with a variety of cellular activities
AL474_05835	SM00382	ATPases associated with a variety of cellular activities
AL474_05835	SM00448	cheY-homologous receiver domain
AL474_05840	SM00091	PAS domain
AL474_05840	SM00387	Histidine kinase-like ATPases
AL474_05840	SM00388	His Kinase A (phosphoacceptor) domain
AL474_05845	SM01230	AL474_05845
AL474_05850	SM00729	Elongator protein 3, MiaB family, Radical SAM
AL474_05865	SM00052	Putative diguanylate phosphodiesterase
AL474_05865	SM00267	diguanylate cyclase
AL474_05910	SM00530	Helix-turn-helix XRE-family like proteins 
AL474_05925	SM00822	AL474_05925
AL474_05940	SM00072	Guanylate kinase homologues.
AL474_05945	SM01409	AL474_05945
AL474_05950	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AL474_05950	SM00954	Region found in RelA / SpoT proteins
AL474_05955	SM00382	ATPases associated with a variety of cellular activities
AL474_05965	SM00062	Bacterial periplasmic substrate-binding proteins
AL474_05965	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AL474_05980	SM01130	AL474_05980
AL474_05995	SM00558	A domain family that is part of the cupin metalloenzyme superfamily.
AL474_06000	SM00533	DNA-binding domain of DNA mismatch repair MUTS family
AL474_06000	SM00534	ATPase domain of DNA mismatch repair MUTS family
AL474_06070	SM00493	AL474_06070
AL474_06165	SM00382	ATPases associated with a variety of cellular activities
AL474_06175	SM00062	Bacterial periplasmic substrate-binding proteins
AL474_06175	SM00079	Eukaryotic homologues of bacterial periplasmic substrate binding proteins.
AL474_06185	SM00346	helix_turn_helix isocitrate lyase regulation
AL474_06190	SM00062	Bacterial periplasmic substrate-binding proteins
AL474_06205	SM01001	AIR carboxylase
AL474_06220	SM00530	Helix-turn-helix XRE-family like proteins 
AL474_06250	SM00421	helix_turn_helix, Lux Regulon
AL474_06265	SM00834	Putative regulatory protein
AL474_06285	SM00382	ATPases associated with a variety of cellular activities
AL474_06300	SM00062	Bacterial periplasmic substrate-binding proteins
AL474_06350	SM00863	Threonyl and Alanyl tRNA synthetase second additional domain
AL474_06355	SM00421	helix_turn_helix, Lux Regulon
AL474_06355	SM00448	cheY-homologous receiver domain
AL474_06375	SM00065	Domain present in phytochromes and cGMP-specific phosphodiesterases.
AL474_06375	SM00267	diguanylate cyclase
AL474_06425	SM01006	Siderophore biosynthesis protein domain
AL474_06445	SM00342	helix_turn_helix, arabinose operon control protein
AL474_06470	SM00267	diguanylate cyclase
AL474_06500	SM00382	ATPases associated with a variety of cellular activities
AL474_06510	SM00843	AL474_06510
AL474_06565	SM00448	cheY-homologous receiver domain
AL474_06565	SM00862	Transcriptional regulatory protein, C terminal
AL474_06585	SM01329	AL474_06585
AL474_06610	SM00382	ATPases associated with a variety of cellular activities
AL474_06635	SM00271	DnaJ molecular chaperone homology domain
AL474_06790	SM00858	AL474_06790
AL474_06860	SM00881	CoA binding domain
AL474_06890	SM00382	ATPases associated with a variety of cellular activities
AL474_06895	SM00448	cheY-homologous receiver domain
AL474_06895	SM00862	Transcriptional regulatory protein, C terminal
AL474_06900	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL474_06900	SM00387	Histidine kinase-like ATPases
AL474_06900	SM00388	His Kinase A (phosphoacceptor) domain
AL474_06915	SM00382	ATPases associated with a variety of cellular activities
AL474_06930	SM00822	AL474_06930
AL474_07030	SM00422	helix_turn_helix, mercury resistance
AL474_07035	SM00411	bacterial (prokaryotic) histone like domain
AL474_07040	SM00873	B3/4 domain
AL474_07040	SM00874	tRNA synthetase B5 domain
AL474_07040	SM00896	Ferredoxin-fold anticodon binding domain
AL474_07075	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL474_07135	SM00354	helix_turn _helix lactose operon repressor
AL474_07140	SM00382	ATPases associated with a variety of cellular activities
AL474_07195	SM00829	Enoylreductase
AL474_07215	SM00342	helix_turn_helix, arabinose operon control protein
AL474_07235	SM00849	Metallo-beta-lactamase superfamily
AL474_07235	SM01027	Beta-Casp domain
AL474_07275	SM00382	ATPases associated with a variety of cellular activities
AL474_07290	SM00346	helix_turn_helix isocitrate lyase regulation
AL474_07315	SM00530	Helix-turn-helix XRE-family like proteins 
AL474_07325	SM00116	Domain in cystathionine beta-synthase and other proteins.
AL474_07325	SM01240	AL474_07325
AL474_07380	SM00344	helix_turn_helix ASNC type
AL474_07425	SM00420	helix_turn_helix, Deoxyribose operon repressor
AL474_07425	SM01134	AL474_07425
AL474_07435	SM00346	helix_turn_helix isocitrate lyase regulation
AL474_07485	SM01130	AL474_07485
AL474_07490	SM00346	helix_turn_helix isocitrate lyase regulation
AL474_07525	SM01007	Class II Aldolase and Adducin N-terminal domain
AL474_07530	SM00530	Helix-turn-helix XRE-family like proteins 
AL474_07535	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL474_07555	SM01211	AL474_07555
AL474_07650	SM00479	AL474_07650
AL474_07710	SM00938	Nitrogen regulatory protein P-II
AL474_07745	SM00729	Elongator protein 3, MiaB family, Radical SAM
AL474_07750	SM00852	Probable molybdopterin binding domain
AL474_07755	SM00852	Probable molybdopterin binding domain
AL474_07805	SM00729	Elongator protein 3, MiaB family, Radical SAM
AL474_07805	SM00876	Biotin and Thiamin Synthesis associated domain
AL474_07830	SM00422	helix_turn_helix, mercury resistance
AL474_07900	SM00938	Nitrogen regulatory protein P-II
AL474_07930	SM00382	ATPases associated with a variety of cellular activities
AL474_07935	SM00382	ATPases associated with a variety of cellular activities
AL474_07980	SM00382	ATPases associated with a variety of cellular activities
AL474_07980	SM01086	C-terminal, D2-small domain, of ClpB protein
AL474_07990	SM01359	AL474_07990
AL474_07990	SM01360	AL474_07990
AL474_08000	SM00357	Cold shock protein domain
AL474_08065	SM00822	AL474_08065
AL474_08165	SM00382	ATPases associated with a variety of cellular activities
AL474_08200	SM00861	Transketolase, pyrimidine binding domain
AL474_08215	SM00346	helix_turn_helix isocitrate lyase regulation
AL474_08245	SM00116	Domain in cystathionine beta-synthase and other proteins.
AL474_08245	SM00924	MgtE intracellular N domain
AL474_08295	SM00382	ATPases associated with a variety of cellular activities
AL474_08295	SM00930	AL474_08295
AL474_08345	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL474_08345	SM00895	AL474_08345
AL474_08380	SM00382	ATPases associated with a variety of cellular activities
AL474_08410	SM00422	helix_turn_helix, mercury resistance
AL474_08435	SM00822	AL474_08435
AL474_08500	SM00822	AL474_08500
AL474_08525	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AL474_08550	SM00829	Enoylreductase
AL474_08565	SM00382	ATPases associated with a variety of cellular activities
AL474_08590	SM00344	helix_turn_helix ASNC type
AL474_08635	SM00248	ankyrin repeats
AL474_08660	SM00382	ATPases associated with a variety of cellular activities
AL474_08695	SM00346	helix_turn_helix isocitrate lyase regulation
AL474_08710	SM00382	ATPases associated with a variety of cellular activities
AL474_08750	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL474_08750	SM00895	AL474_08750
AL474_08820	SM01002	Alanine dehydrogenase/PNT, C-terminal domain
AL474_08820	SM01003	Alanine dehydrogenase/PNT, N-terminal domain
AL474_08865	SM00912	haemagglutination activity domain
AL474_08885	SM00528	Domain in histone-like proteins of HNS family
AL474_08925	SM00257	Lysin motif
AL474_08975	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AL474_09000	SM00448	cheY-homologous receiver domain
AL474_09005	SM00387	Histidine kinase-like ATPases
AL474_09100	SM00363	S4 RNA-binding domain
AL474_09130	SM00859	Semialdehyde dehydrogenase, NAD binding domain
AL474_09170	SM00382	ATPases associated with a variety of cellular activities
AL474_09190	SM00487	DEAD-like helicases superfamily
AL474_09190	SM00490	helicase superfamily c-terminal domain
AL474_09200	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL474_09200	SM00895	AL474_09200
AL474_09230	SM00344	helix_turn_helix ASNC type
AL474_09310	SM00878	Biotin carboxylase C-terminal domain
AL474_09340	SM00955	AL474_09340
AL474_09370	SM00344	helix_turn_helix ASNC type
AL474_09400	SM00957	SecA DEAD-like domain
AL474_09400	SM00958	SecA preprotein cross-linking domain
AL474_09420	SM00864	Tubulin/FtsZ family, GTPase domain
AL474_09420	SM00865	Tubulin/FtsZ family, C-terminal domain
AL474_09425	SM00842	Cell division protein FtsA
AL474_09495	SM00382	ATPases associated with a variety of cellular activities
AL474_09510	SM00151	SWI complex, BAF60b domains
AL474_09545	SM00344	helix_turn_helix ASNC type
AL474_09650	SM00382	ATPases associated with a variety of cellular activities
AL474_09650	SM01086	C-terminal, D2-small domain, of ClpB protein
AL474_09665	SM00833	Cobalamin synthesis protein cobW C-terminal domain
AL474_09680	SM00382	ATPases associated with a variety of cellular activities
AL474_09750	SM00996	S-adenosyl-L-homocysteine hydrolase
AL474_09750	SM00997	S-adenosyl-L-homocysteine hydrolase, NAD binding domain
AL474_09805	SM00487	DEAD-like helicases superfamily
AL474_09805	SM00490	helicase superfamily c-terminal domain
AL474_09810	SM00986	Uracil DNA glycosylase superfamily
AL474_09810	SM00987	UreE urease accessory protein, C-terminal domain 
AL474_09820	SM00155	Phospholipase D. Active site motifs.
AL474_09825	SM00382	ATPases associated with a variety of cellular activities
AL474_09875	SM00344	helix_turn_helix ASNC type
AL474_09875	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL474_09915	SM00422	helix_turn_helix, mercury resistance
AL474_09915	SM00530	Helix-turn-helix XRE-family like proteins 
AL474_09950	SM00862	Transcriptional regulatory protein, C terminal
AL474_09960	SM00869	Autotransporter beta-domain
AL474_10040	SM01400	AL474_10040
AL474_10065	SM00898	Formamidopyrimidine-DNA glycosylase N-terminal domain
AL474_10065	SM01232	AL474_10065
AL474_10070	SM00849	Metallo-beta-lactamase superfamily
AL474_10105	SM00387	Histidine kinase-like ATPases
AL474_10105	SM00388	His Kinase A (phosphoacceptor) domain
AL474_10110	SM00448	cheY-homologous receiver domain
AL474_10110	SM00862	Transcriptional regulatory protein, C terminal
AL474_10170	SM00984	UDP binding domain
AL474_10200	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL474_10255	SM00988	UreE urease accessory protein, N-terminal domain
AL474_10285	SM00422	helix_turn_helix, mercury resistance
AL474_10305	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL474_10305	SM00866	AL474_10305
AL474_10385	SM00382	ATPases associated with a variety of cellular activities
AL474_10390	SM00382	ATPases associated with a variety of cellular activities
AL474_10475	SM00849	Metallo-beta-lactamase superfamily
AL474_10480	SM00257	Lysin motif
AL474_10520	SM00448	cheY-homologous receiver domain
AL474_10520	SM00862	Transcriptional regulatory protein, C terminal
AL474_10610	SM00382	ATPases associated with a variety of cellular activities
AL474_10645	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL474_10645	SM00866	AL474_10645
AL474_10670	SM00903	Flavin reductase like domain
AL474_10755	SM00925	MltA specific insert domain
AL474_10785	SM00905	Dihydroneopterin aldolase
AL474_10795	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AL474_10855	SM00382	ATPases associated with a variety of cellular activities
AL474_10875	SM00487	DEAD-like helicases superfamily
AL474_10875	SM00490	helicase superfamily c-terminal domain
AL474_11025	SM00346	helix_turn_helix isocitrate lyase regulation
AL474_11065	SM00155	Phospholipase D. Active site motifs.
AL474_11085	SM00834	Putative regulatory protein
AL474_11120	SM00116	Domain in cystathionine beta-synthase and other proteins.
AL474_11140	SM00382	ATPases associated with a variety of cellular activities
AL474_11195	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
AL474_11235	SM00937	AL474_11235
AL474_11265	SM00346	helix_turn_helix isocitrate lyase regulation
AL474_11275	SM00881	CoA binding domain
AL474_11300	SM00344	helix_turn_helix ASNC type
AL474_11330	SM00881	CoA binding domain
AL474_11340	SM00829	Enoylreductase
AL474_11410	SM01130	AL474_11410
AL474_11475	SM00346	helix_turn_helix isocitrate lyase regulation
AL474_11485	SM00861	Transketolase, pyrimidine binding domain
AL474_11525	SM00382	ATPases associated with a variety of cellular activities
AL474_11530	SM00382	ATPases associated with a variety of cellular activities
AL474_11560	SM00346	helix_turn_helix isocitrate lyase regulation
AL474_11580	SM00228	Domain present in PSD-95, Dlg, and ZO-1/2.
AL474_11580	SM00245	tail specific protease
AL474_11590	SM00855	Phosphoglycerate mutase family
AL474_11595	SM00450	Rhodanese Homology Domain
AL474_11655	SM00382	ATPases associated with a variety of cellular activities
AL474_11675	SM01008	Aldehyde oxidase and xanthine dehydrogenase, a/b hammerhead domain
AL474_11740	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL474_11755	SM00448	cheY-homologous receiver domain
AL474_11760	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL474_11760	SM00387	Histidine kinase-like ATPases
AL474_11760	SM00388	His Kinase A (phosphoacceptor) domain
AL474_11830	SM00062	Bacterial periplasmic substrate-binding proteins
AL474_11850	SM00344	helix_turn_helix ASNC type
AL474_11900	SM00729	Elongator protein 3, MiaB family, Radical SAM
AL474_11920	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL474_11920	SM00895	AL474_11920
AL474_11960	SM00346	helix_turn_helix isocitrate lyase regulation
AL474_12010	SM01119	AL474_12010
AL474_12020	SM00244	prohibitin homologues
AL474_12135	SM01234	AL474_12135
AL474_12150	SM00382	ATPases associated with a variety of cellular activities
AL474_12150	SM00760	Bacterial dnaA protein helix-turn-helix domain
AL474_12155	SM00480	DNA polymerase III beta subunit
AL474_12160	SM00387	Histidine kinase-like ATPases
AL474_12160	SM00433	TopoisomeraseII
AL474_12165	SM00346	helix_turn_helix isocitrate lyase regulation
AL474_12190	SM00342	helix_turn_helix, arabinose operon control protein
AL474_12190	SM00871	Bacterial transcription activator, effector binding domain
AL474_12210	SM00422	helix_turn_helix, mercury resistance
AL474_12215	SM00849	Metallo-beta-lactamase superfamily
AL474_12245	SM00878	Biotin carboxylase C-terminal domain
AL474_12245	SM01209	AL474_12245
AL474_12265	SM01119	AL474_12265
AL474_12300	SM00436	Bacterial DNA topoisomeraes I ATP-binding domain
AL474_12300	SM00437	Bacterial DNA topoisomerase I DNA-binding domain
AL474_12300	SM00493	AL474_12300
AL474_12310	SM00382	ATPases associated with a variety of cellular activities
AL474_12340	SM00344	helix_turn_helix ASNC type
AL474_12350	SM00317	SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain
AL474_12370	SM01018	B12 binding domain
AL474_12450	SM00838	Elongation factor G C-terminus
AL474_12450	SM00889	Elongation factor G, domain IV
AL474_12460	SM01403	AL474_12460
AL474_12480	SM01382	AL474_12480
AL474_12480	SM01383	AL474_12480
AL474_12495	SM00322	K homology RNA-binding domain
AL474_12530	SM01374	AL474_12530
AL474_12605	SM00363	S4 RNA-binding domain
AL474_12605	SM01390	AL474_12605
AL474_12610	SM00662	RNA polymerases D
AL474_12640	SM01004	Delta-aminolevulinic acid dehydratase
AL474_12670	SM01219	AL474_12670
AL474_12690	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AL474_12740	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL474_12740	SM00866	AL474_12740
AL474_12785	SM00382	ATPases associated with a variety of cellular activities
AL474_12840	SM01130	AL474_12840
AL474_12850	SM00257	Lysin motif
AL474_12900	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL474_12910	SM00062	Bacterial periplasmic substrate-binding proteins
AL474_12915	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL474_12930	SM00382	ATPases associated with a variety of cellular activities
AL474_12945	SM00829	Enoylreductase
AL474_12995	SM00382	ATPases associated with a variety of cellular activities
AL474_13045	SM00984	UDP binding domain
AL474_13135	SM00100	Cyclic nucleotide-monophosphate binding domain
AL474_13160	SM00829	Enoylreductase
AL474_13190	SM00382	ATPases associated with a variety of cellular activities
AL474_13300	SM00530	Helix-turn-helix XRE-family like proteins 
AL474_13505	SM00421	helix_turn_helix, Lux Regulon
AL474_13545	SM00382	ATPases associated with a variety of cellular activities
AL474_13560	SM00062	Bacterial periplasmic substrate-binding proteins
AL474_13565	SM00382	ATPases associated with a variety of cellular activities
AL474_13585	SM00478	endonuclease III
AL474_13590	SM00530	Helix-turn-helix XRE-family like proteins 
AL474_13665	SM01060	AL474_13665
AL474_13675	SM00382	ATPases associated with a variety of cellular activities
AL474_13695	SM00382	ATPases associated with a variety of cellular activities
AL474_13700	SM00382	ATPases associated with a variety of cellular activities
AL474_13730	SM00448	cheY-homologous receiver domain
AL474_13730	SM00862	Transcriptional regulatory protein, C terminal
AL474_13735	SM00387	Histidine kinase-like ATPases
AL474_13735	SM00388	His Kinase A (phosphoacceptor) domain
AL474_13760	SM00357	Cold shock protein domain
AL474_13765	SM01228	AL474_13765
AL474_13785	SM00470	ParB-like nuclease domain
AL474_13830	SM00738	In Spt5p, this domain may confer affinity for Spt4p. It possesses a RNP-like fold.
AL474_13830	SM00739	KOW (Kyprides, Ouzounis, Woese) motif.
AL474_13835	SM00649	Ribosomal protein L11/L12
AL474_13860	SM00663	RNA polymerase I subunit A N-terminus
AL474_13890	SM00448	cheY-homologous receiver domain
AL474_13890	SM00862	Transcriptional regulatory protein, C terminal
AL474_13960	SM00563	Phosphate acyltransferases
AL474_14000	SM00421	helix_turn_helix, Lux Regulon
AL474_14045	SM00382	ATPases associated with a variety of cellular activities
AL474_14060	SM00062	Bacterial periplasmic substrate-binding proteins
AL474_14150	SM00387	Histidine kinase-like ATPases
AL474_14160	SM00644	AL474_14160
AL474_14175	SM00382	ATPases associated with a variety of cellular activities
AL474_14175	SM00962	SRP54-type protein, GTPase domain
AL474_14175	SM00963	SRP54-type protein, helical bundle domain
AL474_14275	SM00382	ATPases associated with a variety of cellular activities
AL474_14300	SM00936	Penicillin-binding protein 5, C-terminal domain 
AL474_14320	SM00729	Elongator protein 3, MiaB family, Radical SAM
AL474_14365	SM00836	DALR anticodon binding domain
AL474_14365	SM01016	Arginyl tRNA synthetase N terminal dom
AL474_14400	SM00382	ATPases associated with a variety of cellular activities
AL474_14415	SM00382	ATPases associated with a variety of cellular activities
AL474_14445	SM00917	LeuA allosteric (dimerisation) domain
AL474_14500	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL474_14500	SM00895	AL474_14500
AL474_14535	SM00346	helix_turn_helix isocitrate lyase regulation
AL474_14550	SM00796	Allophanate hydrolase subunit 1
AL474_14575	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL474_14575	SM00387	Histidine kinase-like ATPases
AL474_14575	SM00388	His Kinase A (phosphoacceptor) domain
AL474_14580	SM00448	cheY-homologous receiver domain
AL474_14580	SM00862	Transcriptional regulatory protein, C terminal
AL474_14585	SM00091	PAS domain
AL474_14585	SM00387	Histidine kinase-like ATPases
AL474_14585	SM00388	His Kinase A (phosphoacceptor) domain
AL474_14590	SM00448	cheY-homologous receiver domain
AL474_14590	SM00862	Transcriptional regulatory protein, C terminal
AL474_14600	SM00978	AL474_14600
AL474_14645	SM00487	DEAD-like helicases superfamily
AL474_14645	SM00490	helicase superfamily c-terminal domain
AL474_14690	SM00450	Rhodanese Homology Domain
AL474_14785	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL474_14785	SM00895	AL474_14785
AL474_14835	SM00882	Coenzyme A transferase
AL474_14840	SM00882	Coenzyme A transferase
AL474_14845	SM00346	helix_turn_helix isocitrate lyase regulation
AL474_14900	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL474_14900	SM00895	AL474_14900
AL474_14965	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL474_14965	SM00895	AL474_14965
AL474_15005	SM00382	ATPases associated with a variety of cellular activities
AL474_15030	SM00646	AL474_15030
AL474_15110	SM00382	ATPases associated with a variety of cellular activities
AL474_15225	SM00342	helix_turn_helix, arabinose operon control protein
AL474_15285	SM00347	helix_turn_helix multiple antibiotic resistance protein
AL474_15310	SM00382	ATPases associated with a variety of cellular activities
AL474_15315	SM00382	ATPases associated with a variety of cellular activities
AL474_15385	SM00732	Likely ribonuclease with RNase H fold.
AL474_15400	SM00563	Phosphate acyltransferases
AL474_15450	SM00849	Metallo-beta-lactamase superfamily
AL474_15475	SM00267	diguanylate cyclase
AL474_15500	SM00382	ATPases associated with a variety of cellular activities
AL474_15520	SM00965	Secretin and TonB N terminus short domain
AL474_15565	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL474_15565	SM00895	AL474_15565
AL474_15580	SM01236	AL474_15580
AL474_15600	SM00062	Bacterial periplasmic substrate-binding proteins
AL474_15625	SM00839	Glutamate/Leucine/Phenylalanine/Valine dehydrogenase
AL474_15640	SM00845	GatB domain
AL474_15715	SM00749	bacterial OsmY and nodulation domain
AL474_15785	SM00346	helix_turn_helix isocitrate lyase regulation
AL474_15825	SM00450	Rhodanese Homology Domain
AL474_15920	SM00479	AL474_15920
AL474_15950	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL474_16025	SM00357	Cold shock protein domain
AL474_16035	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL474_16035	SM00895	AL474_16035
AL474_16050	SM00926	Molybdopterin oxidoreductase Fe4S4 domain
AL474_16120	SM00363	S4 RNA-binding domain
AL474_16125	SM00316	Ribosomal protein S1-like RNA-binding domain
AL474_16165	SM00954	Region found in RelA / SpoT proteins
AL474_16210	SM00478	endonuclease III
AL474_16210	SM00525	AL474_16210
AL474_16215	SM00382	ATPases associated with a variety of cellular activities
AL474_16220	SM00382	ATPases associated with a variety of cellular activities
AL474_16250	SM00382	ATPases associated with a variety of cellular activities
AL474_16275	SM00382	ATPases associated with a variety of cellular activities
AL474_16300	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AL474_16300	SM00292	breast cancer carboxy-terminal domain
AL474_16300	SM00532	Ligase N family
AL474_16305	SM00771	ZipA, C-terminal domain (FtsZ-binding)
AL474_16310	SM00968	SMC proteins Flexible Hinge Domain
AL474_16320	SM00986	Uracil DNA glycosylase superfamily
AL474_16320	SM00987	UreE urease accessory protein, C-terminal domain 
AL474_16330	SM00448	cheY-homologous receiver domain
AL474_16330	SM00862	Transcriptional regulatory protein, C terminal
AL474_16340	SM00387	Histidine kinase-like ATPases
AL474_16340	SM00388	His Kinase A (phosphoacceptor) domain
AL474_16355	SM00342	helix_turn_helix, arabinose operon control protein
AL474_16370	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL474_16370	SM00895	AL474_16370
AL474_16375	SM01130	AL474_16375
AL474_16430	SM00387	Histidine kinase-like ATPases
AL474_16430	SM00388	His Kinase A (phosphoacceptor) domain
AL474_16435	SM00448	cheY-homologous receiver domain
AL474_16435	SM00862	Transcriptional regulatory protein, C terminal
AL474_16460	SM00411	bacterial (prokaryotic) histone like domain
AL474_16465	SM00702	Prolyl 4-hydroxylase alpha subunit homologues.
AL474_16475	SM00967	RNA 2'-O ribose methyltransferase substrate binding
AL474_16480	SM00316	Ribosomal protein S1-like RNA-binding domain
AL474_16480	SM00357	Cold shock protein domain
AL474_16480	SM00955	AL474_16480
AL474_16490	SM01144	AL474_16490
AL474_16525	SM00155	Phospholipase D. Active site motifs.
AL474_16570	SM00471	Metal dependent phosphohydrolases with conserved 'HD' motif.
AL474_16575	SM00267	diguanylate cyclase
AL474_16635	SM00883	Chaperonin 10 Kd subunit
AL474_16665	SM00934	Orotidine 5'-phosphate decarboxylase / HUMPS family
AL474_16705	SM00346	helix_turn_helix isocitrate lyase regulation
AL474_16745	SM00880	AL474_16745
AL474_16750	SM00382	ATPases associated with a variety of cellular activities
AL474_16750	SM00962	SRP54-type protein, GTPase domain
AL474_16750	SM00963	SRP54-type protein, helical bundle domain
AL474_16785	SM00418	helix_turn_helix, Arsenical Resistance Operon Repressor
AL474_16815	SM00382	ATPases associated with a variety of cellular activities
AL474_16835	SM00919	Malic enzyme, NAD binding domain
AL474_16835	SM01274	AL474_16835
AL474_16855	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL474_16855	SM00895	AL474_16855
AL474_16935	SM00346	helix_turn_helix isocitrate lyase regulation
AL474_16940	SM00852	Probable molybdopterin binding domain
AL474_16960	SM00487	DEAD-like helicases superfamily
AL474_16960	SM00490	helicase superfamily c-terminal domain
AL474_17035	SM01011	Aminopeptidase P, N-terminal domain
AL474_17060	SM00798	AICARFT/IMPCHase bienzyme
AL474_17060	SM00851	MGS-like domain
AL474_17070	SM00278	Helix-hairpin-helix DNA-binding motif class 1
AL474_17085	SM00382	ATPases associated with a variety of cellular activities
AL474_17090	SM00341	Helicase and RNase D C-terminal
AL474_17090	SM00487	DEAD-like helicases superfamily
AL474_17090	SM00490	helicase superfamily c-terminal domain
AL474_17090	SM00956	AL474_17090
AL474_17105	SM00947	Carbonic anhydrase
AL474_17130	SM00382	ATPases associated with a variety of cellular activities
AL474_17135	SM00382	ATPases associated with a variety of cellular activities
AL474_17365	SM00448	cheY-homologous receiver domain
AL474_17365	SM00862	Transcriptional regulatory protein, C terminal
AL474_17420	SM00382	ATPases associated with a variety of cellular activities
AL474_17465	SM00650	Ribosomal RNA adenine dimethylases
AL474_17530	SM00382	ATPases associated with a variety of cellular activities
AL474_17550	SM00346	helix_turn_helix isocitrate lyase regulation
AL474_17585	SM00867	YceI-like domain 
AL474_17590	SM00965	Secretin and TonB N terminus short domain
AL474_17615	SM00530	Helix-turn-helix XRE-family like proteins 
AL474_17625	SM00530	Helix-turn-helix XRE-family like proteins 
AL474_17635	SM00359	Putative RNA-binding Domain in PseudoUridine synthase and Archaeosine transglycosylase
AL474_17715	SM00382	ATPases associated with a variety of cellular activities
AL474_17735	SM00062	Bacterial periplasmic substrate-binding proteins
AL474_17750	SM00382	ATPases associated with a variety of cellular activities
AL474_17780	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL474_17780	SM00895	AL474_17780
AL474_17785	SM00869	Autotransporter beta-domain
AL474_17790	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL474_17790	SM00895	AL474_17790
AL474_17795	SM00829	Enoylreductase
AL474_17815	SM00382	ATPases associated with a variety of cellular activities
AL474_17875	SM00487	DEAD-like helicases superfamily
AL474_17875	SM00490	helicase superfamily c-terminal domain
AL474_17875	SM00982	AL474_17875
AL474_17875	SM01058	CarD-like/TRCF domain
AL474_17960	SM00929	NADH-ubiquinone oxidoreductase-G iron-sulfur binding region
AL474_17965	SM00928	NADH-ubiquinone oxidoreductase-F iron-sulfur binding region
AL474_18020	SM00014	Acid phosphatase homologues
AL474_18080	SM00346	helix_turn_helix isocitrate lyase regulation
AL474_18105	SM00450	Rhodanese Homology Domain
AL474_18170	SM00346	helix_turn_helix isocitrate lyase regulation
AL474_18195	SM00829	Enoylreductase
AL474_18225	SM00316	Ribosomal protein S1-like RNA-binding domain
AL474_18225	SM00322	K homology RNA-binding domain
AL474_18230	SM01387	AL474_18230
AL474_18270	SM00382	ATPases associated with a variety of cellular activities
AL474_18345	SM00345	helix_turn_helix gluconate operon transcriptional repressor
AL474_18345	SM00866	AL474_18345
AL474_18350	SM00878	Biotin carboxylase C-terminal domain
AL474_18400	SM00382	ATPases associated with a variety of cellular activities
AL474_18505	SM00434	DNA Topoisomerase IV
AL474_18515	SM00830	Chorismate mutase type II
AL474_18535	SM00316	Ribosomal protein S1-like RNA-binding domain
AL474_18540	SM00411	bacterial (prokaryotic) histone like domain
AL474_18590	SM00893	Electron transfer flavoprotein domain
AL474_18595	SM00893	Electron transfer flavoprotein domain
AL474_18630	SM00382	ATPases associated with a variety of cellular activities
AL474_18650	SM00729	Elongator protein 3, MiaB family, Radical SAM
AL474_18700	SM00363	S4 RNA-binding domain
AL474_18745	SM00421	helix_turn_helix, Lux Regulon
AL474_18745	SM00448	cheY-homologous receiver domain
AL474_18750	SM00086	Motif C-terminal to PAS motifs (likely to contribute to PAS structural domain)
AL474_18750	SM00091	PAS domain
AL474_18750	SM00387	Histidine kinase-like ATPases
AL474_18750	SM00388	His Kinase A (phosphoacceptor) domain
AL474_18785	SM00861	Transketolase, pyrimidine binding domain
AL474_18790	SM00846	Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain
AL474_18865	SM00852	Probable molybdopterin binding domain
AL474_18885	SM00316	Ribosomal protein S1-like RNA-binding domain
AL474_18920	SM00448	cheY-homologous receiver domain
AL474_18925	SM00073	Histidine Phosphotransfer domain
AL474_18925	SM00260	Two component signalling adaptor domain
AL474_18925	SM00387	Histidine kinase-like ATPases
AL474_18925	SM01231	AL474_18925
AL474_18930	SM00260	Two component signalling adaptor domain
AL474_18935	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL474_18935	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL474_18945	SM00448	cheY-homologous receiver domain
AL474_18950	SM00448	cheY-homologous receiver domain
AL474_18990	SM01091	Transporter associated domain
AL474_19005	SM00729	Elongator protein 3, MiaB family, Radical SAM
AL474_19030	SM01323	AL474_19030
AL474_19060	SM00869	Autotransporter beta-domain
AL474_19110	SM00919	Malic enzyme, NAD binding domain
AL474_19110	SM01274	AL474_19110
AL474_19135	SM00382	ATPases associated with a variety of cellular activities
AL474_19185	SM00382	ATPases associated with a variety of cellular activities
AL474_19195	SM01103	AL474_19195
AL474_19230	SM00116	Domain in cystathionine beta-synthase and other proteins.
AL474_19250	SM00448	cheY-homologous receiver domain
AL474_19250	SM00862	Transcriptional regulatory protein, C terminal
AL474_19270	SM00382	ATPases associated with a variety of cellular activities
AL474_19290	SM00382	ATPases associated with a variety of cellular activities
AL474_19340	SM00382	ATPases associated with a variety of cellular activities
AL474_19380	SM00481	DNA polymerase alpha chain like domain
AL474_19400	SM00919	Malic enzyme, NAD binding domain
AL474_19400	SM01274	AL474_19400
AL474_19410	SM00344	helix_turn_helix ASNC type
AL474_19425	SM00861	Transketolase, pyrimidine binding domain
AL474_19485	SM00316	Ribosomal protein S1-like RNA-binding domain
AL474_19485	SM00732	Likely ribonuclease with RNase H fold.
AL474_19490	SM00491	AL474_19490
AL474_19500	SM00363	S4 RNA-binding domain
AL474_19515	SM00822	AL474_19515
AL474_19570	SM00922	Mandelate racemase / muconate lactonizing enzyme, C-terminal domain
AL474_19580	SM00822	AL474_19580
AL474_19605	SM01007	Class II Aldolase and Adducin N-terminal domain
AL474_19835	SM00283	Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer).
AL474_19835	SM00304	HAMP (Histidine kinases, Adenylyl cyclases, Methyl binding proteins, Phosphatases) domain
AL474_19865	SM00240	Forkhead associated domain
AL474_19865	SM00382	ATPases associated with a variety of cellular activities
AL474_19890	SM00382	ATPases associated with a variety of cellular activities
AL474_20075	SM00382	ATPases associated with a variety of cellular activities
AL474_20090	SM01092	CO dehydrogenase flavoprotein C-terminal domain
AL474_20425	SM00849	Metallo-beta-lactamase superfamily
